HHsearch alignment for GI: 254780332 and conserved domain: cd03217
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.98 E-value=0.043 Score=35.37 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~i 282 (504)
T Consensus 13 ~~vL~~vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~-------------~~~~~G~I~~~g~~i~~~~~~~~~~~-- 77 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-------------YEVTEGEILFKGEDITDLPPEERARL-- 77 (200)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC-------------CCCCCCEEEECCEECCCCCHHHHHHC--
T ss_conf 998855056887998999996899999999999707777-------------78520079999999886999999976--
Q ss_pred HHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf 99874101100012-137688998999999986278078258998899999--988640224447467767135325664
Q gi|254780332|r 283 SEQTEVPSSKIRRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 283 s~~s~I~~~~i~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
T Consensus 78 ----gi~~~-~q~~~~~~~~---~~~~~l~~~---~------~~LSGGekqrv~iaral~--~~P~lllLD-----EPts 133 (200)
T cd03217 78 ----GIFLA-FQYPPEIPGV---KNADFLRYV---N------EGFSGGEKKRNEILQLLL--LEPDLAILD-----EPDS 133 (200)
T ss_pred ----CEEEE-CCCHHHCCCC---CHHHHHHHH---C------CCCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCCC
T ss_conf ----94896-3676870798---499999764---6------367999999999999996--099999996-----9622
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH-CCEEEEEEC
Q ss_conf 432113788999999999999882791999771382201689999840101432422331-387889725
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD-ADVVLFVIR 428 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd-AD~v~~l~R 428 (504)
T Consensus 134 g-LD--~~~~~~i~~~i~~l~~~-g~tiiiitH~~~-------------------~~~~~~~Drv~vl~~ 180 (200)
T cd03217 134 G-LD--IDALRLVAEVINKLREE-GKSVLIITHYQR-------------------LLDYIKPDRVHVLYD 180 (200)
T ss_pred C-CC--HHHHHHHHHHHHHHHHC-CCEEEEEEECHH-------------------HHHHHCCCEEEEEEC
T ss_conf 6-99--99999999999999857-999999996368-------------------776646999999879