HHsearch alignment for GI: 254780332 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.25 E-value=0.065 Score=34.03 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---1799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~i 282 (504)
T Consensus 13 ~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~-Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~~~gi 77 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS-GFLRP--------------TSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCC
T ss_conf 99872338998899899999899973999999996-79878--------------8318999999668899999997597
Q ss_pred HHH---H----------HHCC---------CCCCCCCCCHH-HHHHHHHHHHHHHHCCEE--EECC-CCCCHHH--HHHH
Q ss_conf 998---7----------4101---------10001213768-899899999998627807--8258-9988999--9998
Q gi|254780332|r 283 SEQ---T----------EVPS---------SKIRRGELTRP-DYEKIVACSQVMQKLPLY--IDQT-GGISMSQ--LATR 334 (504)
Q Consensus 283 s~~---s----------~I~~---------~~i~~g~l~~~-e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~--I~~~ 334 (504)
T Consensus 78 ~~v~Q~~~l~~~ltv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSGG~~Qrv~i 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV---GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHC---CCCCHHCCCHHHCCHHHHHHHHH
T ss_conf 676014102655438998988887604543001102358999999999999974---99804388626699999999999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86402244474677671353256644321137889999999999998827919997713822016899998401014324
Q gi|254780332|r 335 ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG 414 (504)
Q Consensus 335 ~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg 414 (504)
T Consensus 155 Aral~--~~P~lliLD-----EPT~g-LD--~~~~~~i~~~l~~l~~-~G~tii~vsH----------------dl---~ 204 (236)
T cd03219 155 ARALA--TDPKLLLLD-----EPAAG-LN--PEETEELAELIRELRE-RGITVLLVEH----------------DM---D 204 (236)
T ss_pred HHHHH--CCCCEEEEE-----CCCCC-CC--HHHHHHHHHHHHHHHH-CCCEEEEECC----------------CH---H
T ss_conf 99996--599999994-----87658-99--9999999999999996-5999999917----------------48---9
Q ss_pred HHHHHCCEEEEEEC
Q ss_conf 22331387889725
Q gi|254780332|r 415 SIEQDADVVLFVIR 428 (504)
Q Consensus 415 ~IEqdAD~v~~l~R 428 (504)
T Consensus 205 ~~~~~~Drv~vm~~ 218 (236)
T cd03219 205 VVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHCCEEEEEEC
T ss_conf 99996999999989