HHsearch alignment for GI: 254780332 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.022 Score=37.66 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
T Consensus 16 l~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G-~~~~~------~G~i~~~~~~~i~y~-------------------- 68 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPD------EGIVTWGSTVKIGYF-------------------- 68 (144)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC------CEEEEECCCCEEEEE--------------------
T ss_conf 963489987999999998999849999999848-98898------509999996089987--------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 0110001213768899899999998627807825899
Q gi|254780332|r 289 PSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 289 ~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~ 325 (504)
T Consensus 69 -------~QLSgGqkqr~~la~al~~~p~iliLDEPt 98 (144)
T cd03221 69 -------EQLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred -------HHCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf -------007999999999999972599899995775