HHsearch alignment for GI: 254780332 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.0077 Score=41.10 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
T Consensus 13 ~~~l~~~~-~v~~GEiv~ilGpNGaGKSTllk~i~G-~l~p~~G-------~i~~~g~~~~~~p---------------- 67 (177)
T cd03222 13 FFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAG-QLIPNGD-------NDEWDGITPVYKP---------------- 67 (177)
T ss_pred EEEECCCC-CCCCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCC-------CEEECCCCEECCC----------------
T ss_conf 89865899-558998999989999999999999968-8678899-------4666686122155----------------
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf 74101100012137688998999999986278078258998899999988640224447467767135325664432113
Q gi|254780332|r 286 TEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504)
Q Consensus 286 s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504)
T Consensus 68 --------q~~~LSGGqrQRv~iAral~~~----------------------------p~lllLD-----EPts~-LD-- 103 (177)
T cd03222 68 --------QYIDLSGGELQRVAIAAALLRN----------------------------ATFYLFD-----EPSAY-LD-- 103 (177)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHCC----------------------------CCEEEEC-----CCCCC-CC--
T ss_conf --------5150798999999999998239----------------------------9999974-----88653-89--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 78899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 104 ~~~r~~i~~~ik~l~~~~~~Tvl~vsH----------------dl---~~a~~~aDrI~vl~ 146 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEH----------------DL---AVLDYLSDRIHVFE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEEE
T ss_conf 999999999999999965977999858----------------89---99998699999993