HHsearch alignment for GI: 254780332 and conserved domain: cd03235
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.33 E-value=0.0038 Score=43.42 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC--------CCHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585--------2179998
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE--------MSSEQLA 278 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE--------Ms~~el~ 278 (504)
T Consensus 13 ~~L~~is~~i~~Ge~~~liGpNGaGKSTllk~i~G-l~~p~~G~i~i~g~~~~~~~~~igyv~Q~~~~~~~~~ltv~e~v 91 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEEHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 98850278985998999999999869999999976-87889758999999850421828997356333555897399999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH--HHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 789999874101100012137688998999999986278078258998899--999988640224447467767135325
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS--QLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~--~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
T Consensus 92 ~--~~~~~---~~~-~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkQRv~iAraL~--~~P~lLlLD-----E 158 (213)
T cd03235 92 L--MGLYG---HKG-LFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV--QDPDLLLLD-----E 158 (213)
T ss_pred H--HHHHH---HHH-HCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----C
T ss_conf 8--57765---432-226882999999999999879999981984657989999999999996--699999981-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 66443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 159 Ptsg-LD~--~~~~~~~~~i~~l~~~-g~tii~vtH----------------d---l~~~~~~~drii~l~ 206 (213)
T cd03235 159 PFAG-VDP--KTQEDIYELLRELRRE-GMTILVVTH----------------D---LGLVLEYFDRVLLLN 206 (213)
T ss_pred CCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------------C---HHHHHHHCCEEEEEC
T ss_conf 8667-899--9999999999999968-999999907----------------9---899999799999999