HHsearch alignment for GI: 254780332 and conserved domain: cd03237

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.76  E-value=0.0094  Score=40.42  Aligned_cols=163  Identities=18%  Similarity=0.243  Sum_probs=77.7

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE------CCCCHHHHHHHHHHHHHH
Q ss_conf             64167726776213100276999999999985101112333332124797589995------852179998789999874
Q gi|254780332|r  214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS------LEMSSEQLATRIISEQTE  287 (504)
Q Consensus       214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS------lEMs~~el~~R~is~~s~  287 (504)
T Consensus        20 Gti~~GEiv~liGpNGaGKSTLlk~l~-Gll~p~~G~I-------~~~g~~i~~~pq~~~~~~~~tv~~~l~~~------   85 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTFIKMLA-GVLKPDEGDI-------EIELDTVSYKPQYIKADYEGTVRDLLSSI------   85 (246)
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEE-------EECCCCCCCCCHHHCCCCCCCHHHHHHHH------
T ss_conf             846579899999799976999999997-7878886079-------98982057687433257772799999988------


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf             1011000121376889989999999862780782589988999--99988640224447467767135325664432113
Q gi|254780332|r  288 VPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR  365 (504)
Q Consensus       288 I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r  365 (504)
T Consensus        86 ------~~~~~~~~~~~--~e~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~--~~p~ilLLD-----EPts~-LD~~  149 (246)
T cd03237          86 ------TKDFYTHPYFK--TEIAKPLQIEQILDREVPELSGGELQRVAIAACLS--KDADIYLLD-----EPSAY-LDVE  149 (246)
T ss_pred             ------HHHCCCCHHHH--HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCC-CCHH
T ss_conf             ------64312127999--99998849956764870028985999999999984--199999984-----89876-8999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf             78899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r  366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI  427 (504)
Q Consensus       366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~  427 (504)
T Consensus       150 ~--~~~i~~~i~~l~~~~~~Tvi~VtH----------------Dl---~~a~~~aDrIivl~  190 (246)
T cd03237         150 Q--RLMASKVIRRFAENNEKTAFVVEH----------------DI---IMIDYLADRLIVFE  190 (246)
T ss_pred             H--HHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEEC
T ss_conf             9--999999999999867989999837----------------89---99998699999981