HHsearch alignment for GI: 254780332 and conserved domain: cd03244
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.1 Score=32.45 Aligned_cols=172 Identities=21% Similarity=0.331 Sum_probs=80.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
T Consensus 19 vL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g-l~~p--------------~~G~I~i~g~~i~~~~~~~~r~-~i~~ 82 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR-LVEL--------------SSGSILIDGVDISKIGLHDLRS-RISI 82 (221)
T ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHH-HEEE
T ss_conf 1754489986998999999999989999999967-9718--------------9848999999966199999974-0799
Q ss_pred HHHHC---C----CCCC-CCCCCHHHHHHHHHH---HHHHHHCC----EEEECC-CCCCHHH--HHHHHHHHCCCCCCCE
Q ss_conf 87410---1----1000-121376889989999---99986278----078258-9988999--9998864022444746
Q gi|254780332|r 285 QTEVP---S----SKIR-RGELTRPDYEKIVAC---SQVMQKLP----LYIDQT-GGISMSQ--LATRARRLKRQRGLDL 346 (504)
Q Consensus 285 ~s~I~---~----~~i~-~g~l~~~e~~~i~~a---~~~l~~~~----l~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~ 346 (504)
T Consensus 83 v~Q~~~lf~~Tv~eNi~~~~~~~~~~i~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LSgGqkQrv~lARal~--~~p~i 160 (221)
T cd03244 83 IPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL--RKSKI 160 (221)
T ss_pred EECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 9303523560088750710237999999988751608999741044454703666779999999999999996--59999
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
T Consensus 161 lilD-----Epts~L-D~~--~~~~i~~~l~~~~~--~~Tvi~itH-------~---------l---~~~~~-~Dri~vl 210 (221)
T cd03244 161 LVLD-----EATASV-DPE--TDALIQKTIREAFK--DCTVLTIAH-------R---------L---DTIID-SDRILVL 210 (221)
T ss_pred EEEE-----CCCCCC-CHH--HHHHHHHHHHHHCC--CCEEEEEEC-------C---------H---HHHHH-CCEEEEE
T ss_conf 9997-----975679-999--99999999998779--989999915-------8---------8---99983-9989999
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
T Consensus 211 ~ 211 (221)
T cd03244 211 D 211 (221)
T ss_pred E
T ss_conf 8