HHsearch alignment for GI: 254780332 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.18 E-value=0.05 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAY 241 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~ 241 (504)
T Consensus 17 ~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G 50 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 3325589986999999999998759999999986