HHsearch alignment for GI: 254780332 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.26 E-value=0.07 Score=33.78 Aligned_cols=172 Identities=20% Similarity=0.303 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
T Consensus 18 vL~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~idg~~i~~~~~~~~-r~~i~~ 81 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDP--------------TSGEILLDGVDIRDLNLRWL-RSQIGL 81 (238)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-HCCCC--------------CCCEEEECCEECCCCCHHHH-HHCEEE
T ss_conf 222558997699999999999998999999982-38618--------------85189999999231899999-740699
Q ss_pred HHHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCC----EEEEC-CCCCCHHHH--HHHHHHHCCCCCCC
Q ss_conf 87410-------1100012--13768899899999---9986278----07825-899889999--99886402244474
Q gi|254780332|r 285 QTEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLP----LYIDQ-TGGISMSQL--ATRARRLKRQRGLD 345 (504)
Q Consensus 285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~----l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~ 345 (504)
T Consensus 82 v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~a~~~~~l~~~i~~lp~gl~t~ige~G~~LSgGQ~QRialARAl~~--~~~ 159 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPK 159 (238)
T ss_pred ECCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 915896727529999633687899999999999978524355186877225078678589999999999999965--999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
T Consensus 160 ililD-----E~tsaL-D~~te--~~i~~~l~~~~~--~~TvI~ItH-------r----l-------~-~l-~~~D~Iiv 209 (238)
T cd03249 160 ILLLD-----EATSAL-DAESE--KLVQEALDRAMK--GRTTIVIAH-------R----L-------S-TI-RNADLIAV 209 (238)
T ss_pred EEEEE-----CCCCCC-CHHHH--HHHHHHHHHHHC--CCEEEEECC-------C----H-------H-HH-HHCCEEEE
T ss_conf 99997-----876678-99999--999999999809--998999848-------8----8-------8-99-85999999
Q ss_pred EE
Q ss_conf 72
Q gi|254780332|r 426 VI 427 (504)
Q Consensus 426 l~ 427 (504)
T Consensus 210 l~ 211 (238)
T cd03249 210 LQ 211 (238)
T ss_pred EE
T ss_conf 98