>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.80 E-value=0.022 Score=37.66 Aligned_cols=171 Identities=22% Similarity=0.305 Sum_probs=82.5 Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHHHH Q ss_conf 7765564167726776213100276999999999985101112333332124797589995852---1799987899998 Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIISEQ 285 (504) Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is~~ 285 (504) T Consensus 18 L~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~i~g~~i~~~~~~~~r-~~i~~v 81 (234) T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDV--------------DSGRILIDGHDVRDYTLASLR-RQIGLV 81 (234) T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCCHHHHH-HCEEEE T ss_conf 53608998799999999899982999999996-67667--------------886899999996608999997-317999 Q ss_pred HHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHHH--HHHHHHHCCCCCCCE Q ss_conf 7410-------1100012--13768899899999---99862780----78258-99889999--998864022444746 Q gi|254780332|r 286 TEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQL--ATRARRLKRQRGLDL 346 (504) Q Consensus 286 s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~ 346 (504) T Consensus 82 ~Q~~~lf~~Ti~eNI~~g~~~~~~~~i~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGQ~QRi~lARal~--~~~~i 159 (234) T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL--KDPPI 159 (234) T ss_pred CCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCE T ss_conf 3689471645999961479899999999999986345542027788755638878958999999999999996--49998 Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897 Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504) Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504) T Consensus 160 liLD-----Epts~L-D~~~--e~~i~~~l~~~~~--~~TvI~itH-----------~l--~------~l-~~~D~Iivl 209 (234) T cd03251 160 LILD-----EATSAL-DTES--ERLVQAALERLMK--NRTTFVIAH-----------RL--S------TI-ENADRIVVL 209 (234) T ss_pred EEEE-----CCCCCC-CHHH--HHHHHHHHHHHHC--CCEEEEEEC-----------CH--H------HH-HHCCEEEEE T ss_conf 9996-----876689-9899--9999999999819--998999927-----------88--8------99-859999999 Q ss_pred E Q ss_conf 2 Q gi|254780332|r 427 I 427 (504) Q Consensus 427 ~ 427 (504) T Consensus 210 ~ 210 (234) T cd03251 210 E 210 (234) T ss_pred E T ss_conf 8

HHsearch alignment for GI: 254780332 and conserved domain: cd03251