HHsearch alignment for GI: 254780332 and conserved domain: cd03253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.067 Score=33.91 Aligned_cols=173 Identities=17% Similarity=0.266 Sum_probs=83.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
T Consensus 16 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~idg~di~~~~~~~~r~-~i~~ 79 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDV--------------SSGSILIDGQDIREVTLDSLRR-AIGV 79 (236)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHC-CCCCC--------------CCCEEEECCEECCCCCHHHHHH-CEEE
T ss_conf 330568998699999999999998999999974-38548--------------8748999999923189999972-3789
Q ss_pred HHHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHHHH--HHHHHHCCCCCCC
Q ss_conf 87410-------1100012--13768899899999---99862780----78258-998899999--9886402244474
Q gi|254780332|r 285 QTEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQLA--TRARRLKRQRGLD 345 (504)
Q Consensus 285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~I~--~~~r~~~~~~gi~ 345 (504)
T Consensus 80 v~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~~~~~~~l~~~i~~lp~gl~t~ig~~g~~LSgGQ~QrialARal~~--~~~ 157 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPP 157 (236)
T ss_pred EECCCEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 950780116758998865677799999999999850024554487666766278888269999999999999964--999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
T Consensus 158 ililD-----Epts~L-D~~t--e~~i~~~l~~~~~--~~Tvi~itH-------r------------~~~~-~~~D~Iiv 207 (236)
T cd03253 158 ILLLD-----EATSAL-DTHT--EREIQAALRDVSK--GRTTIVIAH-------R------------LSTI-VNADKIIV 207 (236)
T ss_pred EEEEE-----CCCCCC-CHHH--HHHHHHHHHHHHC--CCEEEEECC-------C------------HHHH-HHCCEEEE
T ss_conf 99996-----875679-9899--9999999999809--998999826-------8------------7889-85999999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
T Consensus 208 l~~ 210 (236)
T cd03253 208 LKD 210 (236)
T ss_pred EEC
T ss_conf 989