HHsearch alignment for GI: 254780332 and conserved domain: cd03256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.0032 Score=44.03 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----------CCCCEEEEEE----
Q ss_conf 21013776556416772677621310027699999999998510111233333212----------4797589995----
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT----------INGGIVGFYS---- 269 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~----------~~g~~Vl~fS---- 269 (504)
T Consensus 12 ~g~~~L~~isl~i~~Ge~~~iiGpsGsGKSTLl~~i~-gl~~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ~~~l~ 90 (241)
T cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLN-GLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEECCCCCCC
T ss_conf 7988997838899999899999999833999999997-499998559999999989899899999864918980799789
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCC--HHHHHHHHHHHCCCCCCCE
Q ss_conf 852179998789999874101100012137688998999999986278078258-9988--9999998864022444746
Q gi|254780332|r 270 LEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGIS--MSQLATRARRLKRQRGLDL 346 (504)
Q Consensus 270 lEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~t--i~~I~~~~r~~~~~~gi~~ 346 (504)
T Consensus 91 ~~ltV~enV~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~-~~~~~~~~LSGGq~QRVaIARAL~--~~P~i 165 (241)
T cd03256 91 ERLSVLENVL--SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIARALM--QQPKL 165 (241)
T ss_pred CCCCHHHHHH--HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-HHHCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 9889999986--365413305577617995999999999999769977-876784414802899999999985--59998
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
T Consensus 166 ll~D-----EPts~-LD~~~--~~~i~~ll~~l~~~~g~Tii~vtH----------------dl---~~a~~~adri~~l 218 (241)
T cd03256 166 ILAD-----EPVAS-LDPAS--SRQVMDLLKRINREEGITVIVSLH----------------QV---DLAREYADRIVGL 218 (241)
T ss_pred EEEC-----CCCCC-CCHHH--HHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEE
T ss_conf 9962-----87665-89999--999999999999851989999957----------------98---9999969989999
Q ss_pred EC
Q ss_conf 25
Q gi|254780332|r 427 IR 428 (504)
Q Consensus 427 ~R 428 (504)
T Consensus 219 ~~ 220 (241)
T cd03256 219 KD 220 (241)
T ss_pred EC
T ss_conf 69