HHsearch alignment for GI: 254780332 and conserved domain: cd03258
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.0065 Score=41.64 Aligned_cols=176 Identities=19% Similarity=0.286 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHH--H
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987--8
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLAT--R 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~--R 280 (504)
T Consensus 18 ~~al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~g-L~~--------------p~sG~I~~~g~~i~~~~~~~~~~~Rr 82 (233)
T cd03258 18 VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LER--------------PTSGSVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--------------CCCCEEEECCEECCCCCHHHHHHHHC
T ss_conf 999848288999999999988980589999999967-999--------------99808999999989799999999862
Q ss_pred HHHHHHH----HCCCC--------CCCCCCCHHHH-HHHHHHHHHHHHCCEE--EECCC-CCCHHH--HHHHHHHHCCCC
Q ss_conf 9999874----10110--------00121376889-9899999998627807--82589-988999--999886402244
Q gi|254780332|r 281 IISEQTE----VPSSK--------IRRGELTRPDY-EKIVACSQVMQKLPLY--IDQTG-GISMSQ--LATRARRLKRQR 342 (504)
Q Consensus 281 ~is~~s~----I~~~~--------i~~g~l~~~e~-~~i~~a~~~l~~~~l~--I~d~~-~~ti~~--I~~~~r~~~~~~ 342 (504)
T Consensus 83 ~ig~VFQ~~~L~~~~tv~~nv~~~l~~~~~~~~~~~~r~~~l---L~~vgL~~~~~~yP~eLSGGq~QRVaIARAL~--~ 157 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLEL---LELVGLEDKADAYPAQLSGGQKQRVGIARALA--N 157 (233)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf 587794377889988399999999997499999999999999---98679916762696526778889999999983--3
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
T Consensus 158 ~P~lllaD-----EPTs~L-D~~~--~~~il~ll~~l~~e~g~t~i~vTH----------------D---l~~~~~~adr 210 (233)
T cd03258 158 NPKVLLCD-----EATSAL-DPET--TQSILALLRDINRELGLTIVLITH----------------E---MEVVKRICDR 210 (233)
T ss_pred CCCEEEEC-----CCCCCC-CHHH--HHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCE
T ss_conf 99899965-----976646-9889--999999999999972989999898----------------9---9999986997
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
T Consensus 211 v~vm~~ 216 (233)
T cd03258 211 VAVMEK 216 (233)
T ss_pred EEEEEC
T ss_conf 999979