HHsearch alignment for GI: 254780332 and conserved domain: cd03262
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.99 E-value=0.0064 Score=41.69 Aligned_cols=173 Identities=17% Similarity=0.318 Sum_probs=84.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--HHHHHH--HHH-
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521--799987--899-
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS--SEQLAT--RII- 282 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs--~~el~~--R~i- 282 (504)
T Consensus 15 vL~~vsl~i~~Ge~~~ivGpSGsGKSTLL~~i~g-L~~p--------------~~G~i~i~g~~i~~~~~~~~~~rr~iG 79 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL-LEEP--------------DSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EECCEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCHHHHHHHHCCCE
T ss_conf 8867075988998999999998449999999981-9999--------------864999999999998156999867827
Q ss_pred ------------HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCE--EEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf ------------998741011000121376889989999999862780--782589-988--999999886402244474
Q gi|254780332|r 283 ------------SEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPL--YIDQTG-GIS--MSQLATRARRLKRQRGLD 345 (504)
Q Consensus 283 ------------s~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l--~I~d~~-~~t--i~~I~~~~r~~~~~~gi~ 345 (504)
T Consensus 80 ~VFQ~~~L~p~ltv~eNV~~~l~~~~~~~~~e~~--~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARALa--~~P~ 155 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE--ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA--MNPK 155 (213)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHC--CCCC
T ss_conf 9967987589991999999999997699999999--99999998689978874994446929999999999963--7999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
T Consensus 156 ilL~D-----EPts~L-D~--~~~~~i~~ll~~l~~~-g~T~i~VTH----------------D---~~~a~~~aDri~~ 207 (213)
T cd03262 156 VMLFD-----EPTSAL-DP--ELVGEVLDVMKDLAEE-GMTMVVVTH----------------E---MGFAREVADRVIF 207 (213)
T ss_pred EEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC-CCEEEEECC----------------C---HHHHHHHCCEEEE
T ss_conf 99970-----888877-98--9999999999999862-999999998----------------9---9999996898999
Q ss_pred EE
Q ss_conf 72
Q gi|254780332|r 426 VI 427 (504)
Q Consensus 426 l~ 427 (504)
T Consensus 208 l~ 209 (213)
T cd03262 208 MD 209 (213)
T ss_pred EE
T ss_conf 97