HHsearch alignment for GI: 254780332 and conserved domain: cd03265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.074 Score=33.62 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH-HHHHHHH
Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585217999-8789999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL-ATRIISE 284 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el-~~R~is~ 284 (504)
T Consensus 13 ~~al~~is~~v~~Gei~gllGpNGAGKSTll~~i~-Gl~~p--------------~~G~i~i~G~~~~~~~~~~r~~ig~ 77 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT-TLLKP--------------TSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCHHHHHHCCEE
T ss_conf 99985826798898399999999871999999997-69788--------------9628999999988398999828389
Q ss_pred HHHHCCCCCCCCCCCHH---------------H-HHHHHHHHHHHHHCCEE-EECC--CCCCHHHHH--HHHHHHCCCCC
Q ss_conf 87410110001213768---------------8-99899999998627807-8258--998899999--98864022444
Q gi|254780332|r 285 QTEVPSSKIRRGELTRP---------------D-YEKIVACSQVMQKLPLY-IDQT--GGISMSQLA--TRARRLKRQRG 343 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~---------------e-~~~i~~a~~~l~~~~l~-I~d~--~~~ti~~I~--~~~r~~~~~~g 343 (504)
T Consensus 78 ---~pq~~~l~~~lTv~e~l~~~~~l~g~~~~~~~~~~~~ll~~~---~L~~~~~~~~~~LS~G~kqrv~ia~Al--~~~ 149 (220)
T cd03265 78 ---VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV---GLLEAADRLVKTYSGGMRRRLEIARSL--VHR 149 (220)
T ss_pred ---EECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHCCHHHHCCHHHHHHHHHHHHH--HCC
T ss_conf ---907876798899999999999981999999999999999977---996797370434799999999999998--569
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
T Consensus 150 P~lliLD-----EPt~g-LD--p~~~~~i~~~i~~l~~~~g~tiilssH~l-------------------~eve~l~dri 202 (220)
T cd03265 150 PEVLFLD-----EPTIG-LD--PQTRAHVWEYIEKLKEEFGMTILLTTHYM-------------------EEAEQLCDRV 202 (220)
T ss_pred CCEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHHHHCCCEEEEECCCH-------------------HHHHHHCCEE
T ss_conf 9989980-----88668-89--99999999999999983897999988888-------------------9999869999
Q ss_pred EEEEC
Q ss_conf 89725
Q gi|254780332|r 424 LFVIR 428 (504)
Q Consensus 424 ~~l~R 428 (504)
T Consensus 203 ~il~~ 207 (220)
T cd03265 203 AIIDH 207 (220)
T ss_pred EEEEC
T ss_conf 99979