HHsearch alignment for GI: 254780332 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.24 E-value=0.055 Score=34.58 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH-HHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995852179998-78999
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA-TRIIS 283 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~-~R~is 283 (504)
T Consensus 17 ~~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~-Gl~~--------------p~~G~i~i~G~d~~~~~~~~r~~ig 81 (218)
T cd03266 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA-GLLE--------------PDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCC--------------CCCCEEEECCEECCCCHHHHHCCEE
T ss_conf 689872627898598299999999984999999997-7977--------------8974899999998869798962879
Q ss_pred HHHHHCCCCCCCCCCCHH----------------HHHHHHHHHHHHHHCCEEEECC-CCCCHHHH--HHHHHHHCCCCCC
Q ss_conf 987410110001213768----------------8998999999986278078258-99889999--9988640224447
Q gi|254780332|r 284 EQTEVPSSKIRRGELTRP----------------DYEKIVACSQVMQKLPLYIDQT-GGISMSQL--ATRARRLKRQRGL 344 (504)
Q Consensus 284 ~~s~I~~~~i~~g~l~~~----------------e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I--~~~~r~~~~~~gi 344 (504)
T Consensus 82 ---~~~q~~~l~~~ltv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~kqrv~la~al~--~~P 155 (218)
T cd03266 82 ---FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-MEELLDRRVGGFSTGMRQKVAIARALV--HDP 155 (218)
T ss_pred ---EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHCCCHHHCCCHHHHHHHHHHHHH--CCC
T ss_conf ---98077667999989999999999849998999999999999749-955751443227826889999999986--699
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
T Consensus 156 ~lliLD-----EPt~g-LD~--~~~~~i~~~l~~l~-~~g~til~~sH~-------------------l~e~~~l~dri~ 207 (218)
T cd03266 156 PVLLLD-----EPTTG-LDV--MATRALREFIRQLR-ALGKCILFSTHI-------------------MQEVERLCDRVV 207 (218)
T ss_pred CEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHH-HCCCEEEEECCC-------------------HHHHHHHCCEEE
T ss_conf 899997-----98767-699--99999999999998-579999998987-------------------899999699999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
T Consensus 208 vl~~ 211 (218)
T cd03266 208 VLHR 211 (218)
T ss_pred EEEC
T ss_conf 9989