HHsearch alignment for GI: 254780332 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.61 E-value=0.022 Score=37.67 Aligned_cols=181 Identities=16% Similarity=0.187 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCEEEEE-------ECCCCH
Q ss_conf 01377655641677267762131002769999999999851011123333321247----9758999-------585217
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTIN----GGIVGFY-------SLEMSS 274 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~----g~~Vl~f-------SlEMs~ 274 (504)
T Consensus 34 ~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l-~Gl~~p~~G~I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL-SGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCEEEEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCH
T ss_conf 8986680578848959999999983099999999-649488715999999985104098884379995775424679939
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEEC-CCCCCHHHHH--HHHHHHCCCCCCCEEEEC
Q ss_conf 9998789999874101100012137688-99899999998627807825-8998899999--988640224447467767
Q gi|254780332|r 275 EQLATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQ-TGGISMSQLA--TRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 275 ~el~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d-~~~~ti~~I~--~~~r~~~~~~gi~~vvID 350 (504)
T Consensus 113 ~e~l-~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~rqrv~ia~aL~--~~P~lllLD 178 (236)
T cd03267 113 IDSF-YLLAAIYDLP----------PARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALL--HEPEILFLD 178 (236)
T ss_pred HHHH-HHHHHHHCCC----------HHHHHHHHHHHHHHCCCHH-HHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 9999-9999985738----------9999999999999748687-754934569999999999999996--799999997
Q ss_pred CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 351 YIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 351 YLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 179 -----EPt~-gLD--~~~~~~i~~~l~~l~~~~g~till~tH----------------~---l~ev~~~~Drv~vl~~ 229 (236)
T cd03267 179 -----EPTI-GLD--VVAQENIRNFLKEYNRERGTTVLLTSH----------------Y---MKDIEALARRVLVIDK 229 (236)
T ss_pred -----CCCC-CCC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf -----9876-889--999999999999999738989999888----------------7---8999997999999989