HHsearch alignment for GI: 254780332 and conserved domain: cd03267

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.61  E-value=0.022  Score=37.67  Aligned_cols=181  Identities=16%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCEEEEE-------ECCCCH
Q ss_conf             01377655641677267762131002769999999999851011123333321247----9758999-------585217
Q gi|254780332|r  206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTIN----GGIVGFY-------SLEMSS  274 (504)
Q Consensus       206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~----g~~Vl~f-------SlEMs~  274 (504)
T Consensus        34 ~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l-~Gl~~p~~G~I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv  112 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL-SGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCEEEEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCH
T ss_conf             8986680578848959999999983099999999-649488715999999985104098884379995775424679939


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEEC-CCCCCHHHHH--HHHHHHCCCCCCCEEEEC
Q ss_conf             9998789999874101100012137688-99899999998627807825-8998899999--988640224447467767
Q gi|254780332|r  275 EQLATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQ-TGGISMSQLA--TRARRLKRQRGLDLLIVD  350 (504)
Q Consensus       275 ~el~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d-~~~~ti~~I~--~~~r~~~~~~gi~~vvID  350 (504)
T Consensus       113 ~e~l-~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~rqrv~ia~aL~--~~P~lllLD  178 (236)
T cd03267         113 IDSF-YLLAAIYDLP----------PARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALL--HEPEILFLD  178 (236)
T ss_pred             HHHH-HHHHHHHCCC----------HHHHHHHHHHHHHHCCCHH-HHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf             9999-9999985738----------9999999999999748687-754934569999999999999996--799999997


Q ss_pred             CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf             135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r  351 YIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR  428 (504)
Q Consensus       351 YLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R  428 (504)
T Consensus       179 -----EPt~-gLD--~~~~~~i~~~l~~l~~~~g~till~tH----------------~---l~ev~~~~Drv~vl~~  229 (236)
T cd03267         179 -----EPTI-GLD--VVAQENIRNFLKEYNRERGTTVLLTSH----------------Y---MKDIEALARRVLVIDK  229 (236)
T ss_pred             -----CCCC-CCC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf             -----9876-889--999999999999999738989999888----------------7---8999997999999989