HHsearch alignment for GI: 254780332 and conserved domain: cd03268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.95 E-value=0.17 Score=30.77 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
T Consensus 14 ~al~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~-Gl~~p--------------~~G~i~i~G~~~~~~~~~~~---~ig 75 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL-GLIKP--------------DSGEITFDGKSYQKNIEALR---RIG 75 (208)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCHHHHH---HEE
T ss_conf 9871516688698199999999999999999995-78378--------------98999999999997968571---089
Q ss_pred HHCCCCCCCCCCCHHH------------HHHHHHHHHHHHHCCEEEECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECC
Q ss_conf 4101100012137688------------998999999986278078258-998899999--9886402244474677671
Q gi|254780332|r 287 EVPSSKIRRGELTRPD------------YEKIVACSQVMQKLPLYIDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 287 ~I~~~~i~~g~l~~~e------------~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDY 351 (504)
T Consensus 76 ~~~~~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~kqrl~la~al--~~~p~lliLD- 151 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG-LKDSAKKKVKGFSLGMKQRLGIALAL--LGNPDLLILD- 151 (208)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCHHHCCCHHHCCHHHHHHHHHHHHH--HCCCCEEEEE-
T ss_conf 9947776789889999999999874998899999999809-95033690356999999999999998--5699999993-
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 35325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 352 IQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 352 Lqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 152 ----EPt~-GLD--~~~~~~i~~~l~~l~~~-g~til~~sH-------------------~l~e~~~~~dri~vl~~ 201 (208)
T cd03268 152 ----EPTN-GLD--PDGIKELRELILSLRDQ-GITVLISSH-------------------LLSEIQKVADRIGIINK 201 (208)
T ss_pred ----CCCC-CCC--HHHHHHHHHHHHHHHHC-CCEEEEECC-------------------CHHHHHHHCCEEEEEEC
T ss_conf ----8876-899--99999999999999958-999999898-------------------68999996999999989