HHsearch alignment for GI: 254780332 and conserved domain: cd03288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.89 E-value=0.063 Score=34.12 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958---521799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~~ 285 (504)
T Consensus 37 L~~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~g-l~~p--------------~~G~I~idg~di~~~~~~~lr~~-i~~v 100 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR-MVDI--------------FDGKIVIDGIDISKLPLHTLRSR-LSII 100 (257)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHHH-CCCC--------------CCCEEEECCEEHHHCCHHHHHHH-EEEE
T ss_conf 105389987999999999999819999999960-5667--------------88889999899687999999750-5799
Q ss_pred HHHC---C----CCCCC-CCCCHHHHHHHH---HHHHHHHHCC----EEEECC-CCCCHHHH--HHHHHHHCCCCCCCEE
Q ss_conf 7410---1----10001-213768899899---9999986278----078258-99889999--9988640224447467
Q gi|254780332|r 286 TEVP---S----SKIRR-GELTRPDYEKIV---ACSQVMQKLP----LYIDQT-GGISMSQL--ATRARRLKRQRGLDLL 347 (504)
Q Consensus 286 s~I~---~----~~i~~-g~l~~~e~~~i~---~a~~~l~~~~----l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~v 347 (504)
T Consensus 101 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~l~~~g~~LSgGQrQri~lARAll~--~~~il 178 (257)
T cd03288 101 LQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR--KSSIL 178 (257)
T ss_pred ECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEE
T ss_conf 4567343613554137566768999999999962379997375898517468768369999999999999955--99999
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 179 iLD-----Epts~L-D~~t-e-~~i~~~l~~~~--~~~TvI~ItH-------r------l------~~~~~-~D~Iivl~ 228 (257)
T cd03288 179 IMD-----EATASI-DMAT-E-NILQKVVMTAF--ADRTVVTIAH-------R------V------STILD-ADLVLVLS 228 (257)
T ss_pred EEE-----CCCCCC-CHHH-H-HHHHHHHHHHC--CCCEEEEEEC-------C------H------HHHHH-CCEEEEEE
T ss_conf 995-----876678-9999-9-99999999974--9999999923-------8------9------89985-99999998