HHsearch alignment for GI: 254780332 and conserved domain: cd03291
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.55 E-value=0.026 Score=37.10 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=79.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
T Consensus 51 pVLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~-gl~~p~~G~I-------~~~g-~i~~v~Q~~---~lf~~--Tire 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL-GELEPSEGKI-------KHSG-RISFSSQFS---WIMPG--TIKE 116 (282)
T ss_pred CEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEE-------EECC-EEEEECCCC---CCCCC--CHHH
T ss_conf 6141648998499999999999981999999995-7872786589-------9999-999865744---22671--0999
Q ss_pred HHCCCCCCCC-CCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 4101100012-13768899899999---99862780----78258-9988999--9998864022444746776713532
Q gi|254780332|r 287 EVPSSKIRRG-ELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQ--LATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 287 ~I~~~~i~~g-~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
T Consensus 117 NI-----~~g~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vge~G~~LSGGQkQRlaiARALl~--~p~IliLD----- 184 (282)
T cd03291 117 NI-----IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLD----- 184 (282)
T ss_pred HH-----HCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE-----
T ss_conf 97-----5168868899999999851499998463425523003677589999999999999842--89989986-----
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 56644321137889999999-9999988279199977138220168999984010143242233138788972
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMA-LKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~-lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 185 EpTS~L-D~~tE--~~I~~~~l~~~~~--~kTvI~ItH-------r---------L---~~i-~~aDrIiVL~ 232 (282)
T cd03291 185 SPFGYL-DVFTE--KEIFESCVCKLMA--NKTRILVTS-------K---------M---EHL-KKADKILILH 232 (282)
T ss_pred CCCCCC-CHHHH--HHHHHHHHHHHHC--CCEEEEEEC-------C---------H---HHH-HHCCEEEEEE
T ss_conf 877668-98789--9999999999868--998999937-------8---------8---889-8699999998