HHsearch alignment for GI: 254780332 and conserved domain: cd03298

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90  E-value=0.022  Score=37.66  Aligned_cols=167  Identities=18%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-----------
Q ss_conf             167726776213100276999999999985101112333332124797589995852179998789999-----------
Q gi|254780332|r  216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE-----------  284 (504)
Q Consensus       216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~-----------  284 (504)
T Consensus        21 i~~Ge~~~ilGpSGsGKSTLl~-li~Gl~~p~--------------sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~l   85 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLN-LIAGFETPQ--------------SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL   85 (211)
T ss_pred             ECCCCEEEEECCCCCHHHHHHH-HHHCCCCCC--------------CEEEEECCEECCCCCHHHCCEEEEECCCCCCCCC
T ss_conf             8899899999999955999999-997699988--------------5299999999999998898679995388668999


Q ss_pred             --HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf             --8741011000121376889989999999862780782589-988--99999988640224447467767135325664
Q gi|254780332|r  285 --QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIVDYIQLMTTSK  359 (504)
Q Consensus       285 --~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~  359 (504)
T Consensus        86 tV~eNi~~~l~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~p~~LSGGqkQRvaiARAL~--~~P~ilLlD-----EPts  157 (211)
T cd03298          86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVG-LAGLEKRLPGELSGGERQRVALARVLV--RDKPVLLLD-----EPFA  157 (211)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCC
T ss_conf             49999875886468882999999999998769-987872894558989999999999986--599999971-----8876


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf             43211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r  360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI  427 (504)
Q Consensus       360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~  427 (504)
T Consensus       158 ~-LD~--~~~~~l~~~l~~l~~~~~~Tvi~vTH----------------d~---~ea~~~adriivl~  203 (211)
T cd03298         158 A-LDP--ALRAEMLDLVLDLHAETKMTVLMVTH----------------QP---EDAKRLAQRVVFLD  203 (211)
T ss_pred             C-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEEEE
T ss_conf             5-598--99999999999999974998999988----------------99---99999699999998