Query gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 504
No_of_seqs 193 out of 2522
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 15:17:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780332.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09165 replicative DNA helic 100.0 0 0 992.4 47.8 480 17-498 3-483 (484)
2 PRK08760 replicative DNA helic 100.0 0 0 947.5 46.1 458 5-496 15-473 (476)
3 PRK05636 replicative DNA helic 100.0 0 0 948.2 45.5 443 16-493 65-507 (507)
4 PRK08840 replicative DNA helic 100.0 0 0 929.4 46.2 453 10-497 7-463 (464)
5 PRK07004 replicative DNA helic 100.0 0 0 929.8 45.2 447 14-495 6-456 (460)
6 PRK08082 consensus 100.0 0 0 929.0 44.8 446 16-497 3-448 (453)
7 PRK05595 replicative DNA helic 100.0 0 0 925.8 45.0 441 17-494 2-442 (444)
8 PRK06321 replicative DNA helic 100.0 0 0 923.0 45.8 447 14-497 7-472 (472)
9 PRK07263 consensus 100.0 0 0 923.1 45.5 447 15-493 2-450 (453)
10 PRK08506 replicative DNA helic 100.0 0 0 921.0 45.6 453 21-497 2-459 (473)
11 PRK05748 replicative DNA helic 100.0 0 0 920.7 45.2 442 17-494 4-446 (448)
12 PRK08694 consensus 100.0 0 0 920.4 45.2 451 9-494 4-461 (468)
13 PRK08006 replicative DNA helic 100.0 0 0 919.1 45.9 449 14-497 18-470 (471)
14 PRK06904 replicative DNA helic 100.0 0 0 916.5 45.5 453 11-497 11-469 (472)
15 PRK07773 replicative DNA helic 100.0 0 0 898.8 43.9 382 17-414 2-383 (868)
16 COG0305 DnaB Replicative DNA h 100.0 0 0 879.6 40.9 434 21-491 1-434 (435)
17 TIGR03600 phage_DnaB phage rep 100.0 0 0 870.2 42.8 419 26-480 1-421 (421)
18 PRK06749 replicative DNA helic 100.0 0 0 863.6 41.9 423 23-491 2-428 (428)
19 TIGR00665 DnaB replicative DNA 100.0 0 0 623.5 32.2 446 19-487 2-465 (465)
20 cd00984 DnaB_C DnaB helicase C 100.0 0 0 490.8 24.7 242 207-482 1-242 (242)
21 cd01122 GP4d_helicase GP4d_hel 100.0 0 0 462.4 25.9 258 195-489 6-270 (271)
22 pfam03796 DnaB_C DnaB-like hel 100.0 0 0 368.9 18.8 185 201-399 1-186 (186)
23 PRK05973 replicative DNA helic 100.0 5.3E-41 1.4E-45 331.7 13.4 174 209-428 54-228 (237)
24 cd01121 Sms Sms (bacterial rad 99.8 3.4E-19 8.6E-24 165.6 18.8 207 200-492 62-270 (372)
25 pfam00772 DnaB DnaB-like helic 99.8 3.4E-20 8.7E-25 173.2 11.4 103 22-124 1-103 (103)
26 PRK11823 DNA repair protein Ra 99.8 9.9E-19 2.5E-23 162.1 17.8 206 200-492 70-277 (454)
27 cd01394 radB RadB. The archaea 99.8 3.9E-18 9.9E-23 157.6 20.9 204 202-481 1-211 (218)
28 PRK09361 radB DNA repair and r 99.8 2.1E-18 5.3E-23 159.6 19.1 204 202-483 5-216 (224)
29 cd01123 Rad51_DMC1_radA Rad51_ 99.8 2E-16 5.1E-21 144.5 20.1 213 202-478 1-227 (235)
30 KOG2373 consensus 99.8 7E-18 1.8E-22 155.6 11.7 260 172-489 229-495 (514)
31 COG1066 Sms Predicted ATP-depe 99.8 1.2E-16 3.1E-21 146.2 18.0 208 200-494 73-282 (456)
32 pfam06745 KaiC KaiC. This fami 99.7 2.3E-15 5.9E-20 136.5 18.4 214 202-480 1-217 (231)
33 TIGR00416 sms DNA repair prote 99.7 8.3E-16 2.1E-20 139.8 13.5 209 201-478 84-295 (481)
34 PRK04328 hypothetical protein; 99.7 7.9E-15 2E-19 132.4 17.5 216 202-480 6-225 (250)
35 PRK09302 circadian clock prote 99.7 7.5E-15 1.9E-19 132.5 16.3 199 202-474 248-449 (501)
36 PRK09302 circadian clock prote 99.7 4.3E-14 1.1E-18 126.8 19.0 201 201-474 5-216 (501)
37 PRK06067 flagellar accessory p 99.6 1.4E-13 3.7E-18 122.8 13.4 207 202-482 14-227 (241)
38 cd01393 recA_like RecA is a b 99.6 1.3E-12 3.3E-17 115.5 18.1 215 202-477 1-225 (226)
39 pfam08423 Rad51 Rad51. Rad51 i 99.5 1.2E-11 3E-16 108.2 18.9 216 199-478 22-250 (261)
40 cd01120 RecA-like_NTPases RecA 99.4 7.4E-12 1.9E-16 109.7 13.8 162 221-428 1-165 (165)
41 COG0467 RAD55 RecA-superfamily 99.4 9.9E-12 2.5E-16 108.8 12.2 189 200-428 3-193 (260)
42 cd01124 KaiC KaiC is a circadi 99.4 5.3E-11 1.3E-15 103.3 15.6 176 222-473 2-185 (187)
43 PRK04301 radA DNA repair and r 99.4 4.9E-10 1.2E-14 95.9 19.8 217 199-479 82-309 (318)
44 cd00983 recA RecA is a bacter 99.4 2.8E-10 7E-15 97.8 18.5 225 199-490 33-270 (325)
45 PRK08533 flagellar accessory p 99.4 1.8E-10 4.6E-15 99.2 17.3 208 201-485 5-221 (230)
46 pfam00154 RecA recA bacterial 99.4 6.7E-10 1.7E-14 94.8 19.7 224 199-489 30-266 (322)
47 cd01125 repA Hexameric Replica 99.3 8.4E-11 2.1E-15 101.7 14.0 221 219-473 1-222 (239)
48 PRK09354 recA recombinase A; P 99.3 4E-09 1E-13 88.9 19.2 226 198-490 37-275 (350)
49 TIGR02237 recomb_radB DNA repa 99.2 2.6E-09 6.7E-14 90.3 16.9 200 209-478 1-215 (223)
50 PTZ00035 Rad51; Provisional 99.2 3.1E-09 7.9E-14 89.8 15.4 194 199-427 109-313 (350)
51 COG0468 RecA RecA/RadA recombi 99.1 7.4E-08 1.9E-12 79.3 20.2 214 199-483 39-264 (279)
52 KOG1564 consensus 98.8 2E-07 5.2E-12 76.0 13.1 174 202-396 84-265 (351)
53 PRK09519 recA recombinase A; R 98.8 1.6E-06 4.1E-11 69.1 17.2 179 199-423 38-239 (790)
54 COG3598 RepA RecA-family ATPas 98.7 1.2E-06 3.1E-11 70.1 14.2 159 215-399 85-247 (402)
55 COG2874 FlaH Predicted ATPases 98.7 6.3E-07 1.6E-11 72.2 12.6 208 202-485 10-226 (235)
56 TIGR02236 recomb_radA DNA repa 98.4 4.3E-06 1.1E-10 65.9 10.1 183 199-394 75-270 (333)
57 KOG1433 consensus 98.2 0.00012 3E-09 54.9 13.6 167 198-399 89-260 (326)
58 KOG1434 consensus 98.0 3.9E-06 9.9E-11 66.2 3.1 192 184-409 83-286 (335)
59 TIGR02012 tigrfam_recA protein 97.8 0.0019 5E-08 45.6 13.8 214 198-490 32-271 (322)
60 PRK05703 flhF flagellar biosyn 97.7 0.00048 1.2E-08 50.2 9.6 90 217-327 208-300 (412)
61 cd03115 SRP The signal recogni 97.7 0.002 5.2E-08 45.5 12.6 90 221-352 2-91 (173)
62 COG0541 Ffh Signal recognition 97.7 0.0062 1.6E-07 41.8 14.8 145 217-394 98-250 (451)
63 smart00382 AAA ATPases associa 97.6 0.00043 1.1E-08 50.6 8.5 125 218-393 1-125 (148)
64 PRK13635 cbiO cobalt transport 97.6 0.0013 3.3E-08 47.0 10.7 174 208-428 22-215 (279)
65 PRK06526 transposase; Provisio 97.6 0.0015 3.9E-08 46.4 10.6 41 216-271 95-135 (254)
66 COG1084 Predicted GTPase [Gene 97.6 0.011 2.9E-07 39.8 14.9 107 221-349 170-286 (346)
67 TIGR03499 FlhF flagellar biosy 97.6 0.00093 2.4E-08 48.1 9.3 87 218-350 193-279 (282)
68 TIGR02982 heterocyst_DevA ABC 97.5 0.0012 3.1E-08 47.2 9.5 153 216-395 28-203 (220)
69 TIGR01054 rgy reverse gyrase; 97.5 0.0011 2.8E-08 47.5 9.2 154 173-358 61-225 (1843)
70 pfam00448 SRP54 SRP54-type pro 97.5 0.0057 1.5E-07 42.1 12.8 36 221-271 3-38 (196)
71 PRK09401 reverse gyrase; Revie 97.5 0.0026 6.7E-08 44.6 10.9 116 216-353 90-209 (1176)
72 TIGR02315 ABC_phnC phosphonate 97.5 0.0037 9.3E-08 43.5 11.5 165 203-394 12-217 (253)
73 COG3839 MalK ABC-type sugar tr 97.5 0.0014 3.5E-08 46.8 9.4 137 216-353 26-194 (338)
74 PRK02362 ski2-like helicase; P 97.5 0.004 1E-07 43.3 11.7 13 306-318 467-479 (736)
75 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.0029 7.3E-08 44.4 10.9 180 206-427 17-206 (220)
76 TIGR02238 recomb_DMC1 meiotic 97.5 0.003 7.5E-08 44.2 10.7 219 197-483 73-307 (314)
77 PRK13637 cbiO cobalt transport 97.4 0.0022 5.6E-08 45.2 9.9 176 205-428 19-220 (287)
78 COG1110 Reverse gyrase [DNA re 97.4 0.0032 8.3E-08 43.9 10.7 123 214-358 92-219 (1187)
79 PRK13640 cbiO cobalt transport 97.4 0.00058 1.5E-08 49.6 6.8 177 208-428 23-219 (283)
80 PRK12723 flagellar biosynthesi 97.4 0.006 1.5E-07 41.9 12.0 42 219-271 174-215 (388)
81 PRK12724 flagellar biosynthesi 97.4 0.0073 1.9E-07 41.3 12.4 117 218-393 222-343 (432)
82 PRK06995 flhF flagellar biosyn 97.4 0.0019 4.8E-08 45.7 9.3 92 217-330 174-269 (404)
83 cd03256 ABC_PhnC_transporter A 97.4 0.0032 8.1E-08 44.0 10.5 192 204-428 12-220 (241)
84 PRK11432 fbpC ferric transport 97.4 0.0038 9.7E-08 43.4 10.7 145 208-353 21-197 (351)
85 PRK10584 putative ABC transpor 97.4 0.0017 4.3E-08 46.1 8.8 159 206-392 23-205 (228)
86 cd03261 ABC_Org_Solvent_Resist 97.4 0.0025 6.3E-08 44.8 9.6 176 206-428 13-212 (235)
87 pfam07088 GvpD GvpD gas vesicl 97.4 0.0028 7.1E-08 44.4 9.8 72 198-281 236-309 (484)
88 TIGR00959 ffh signal recogniti 97.4 0.012 3.1E-07 39.6 13.1 148 219-394 102-258 (439)
89 PRK13648 cbiO cobalt transport 97.4 0.00097 2.5E-08 47.9 7.4 173 208-428 24-217 (269)
90 PRK11629 lolD lipoprotein tran 97.4 0.0039 9.9E-08 43.3 10.4 156 208-392 24-204 (233)
91 cd03214 ABC_Iron-Siderophores_ 97.4 0.0016 4.1E-08 46.2 8.4 154 208-427 14-172 (180)
92 cd03296 ABC_CysA_sulfate_impor 97.4 0.0012 2.9E-08 47.4 7.7 178 206-428 15-212 (239)
93 PRK11889 flhF flagellar biosyn 97.3 0.0071 1.8E-07 41.4 11.6 86 220-350 242-327 (436)
94 PRK10253 iron-enterobactin tra 97.3 0.011 2.9E-07 39.8 12.5 178 206-428 20-219 (265)
95 cd03235 ABC_Metallic_Cations A 97.3 0.0038 9.7E-08 43.4 10.1 184 207-427 13-206 (213)
96 cd03292 ABC_FtsE_transporter F 97.3 0.0034 8.6E-08 43.8 9.8 177 203-427 11-210 (214)
97 cd03301 ABC_MalK_N The N-termi 97.3 0.0061 1.6E-07 41.8 11.0 185 208-428 15-206 (213)
98 PRK09452 potA putrescine/sperm 97.3 0.0025 6.4E-08 44.8 9.0 147 206-353 30-208 (378)
99 cd03299 ABC_ModC_like Archeal 97.3 0.0056 1.4E-07 42.2 10.7 178 209-428 15-205 (235)
100 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.0057 1.5E-07 42.1 10.6 173 208-427 19-214 (218)
101 PRK08181 transposase; Validate 97.3 0.0017 4.4E-08 46.1 7.8 40 216-270 103-142 (269)
102 cd03300 ABC_PotA_N PotA is an 97.3 0.0034 8.7E-08 43.8 9.3 175 207-427 14-205 (232)
103 PRK11248 tauB taurine transpor 97.3 0.0034 8.8E-08 43.7 9.2 177 207-427 15-203 (255)
104 PRK10575 iron-hydroxamate tran 97.2 0.0052 1.3E-07 42.4 9.9 177 207-428 25-223 (265)
105 PRK13642 cbiO cobalt transport 97.2 0.00064 1.6E-08 49.3 5.2 176 206-427 20-214 (277)
106 PRK12726 flagellar biosynthesi 97.2 0.027 6.8E-07 37.0 14.0 93 216-353 203-295 (407)
107 COG1245 Predicted ATPase, RNas 97.2 0.0023 5.8E-08 45.1 7.9 201 203-418 342-582 (591)
108 PRK11650 ugpC glycerol-3-phosp 97.2 0.0052 1.3E-07 42.4 9.7 145 206-351 17-193 (358)
109 cd03294 ABC_Pro_Gly_Bertaine T 97.2 0.0069 1.7E-07 41.5 10.3 174 207-428 38-236 (269)
110 PRK13650 cbiO cobalt transport 97.2 0.00085 2.2E-08 48.4 5.6 174 208-428 19-212 (276)
111 PRK11000 maltose/maltodextrin 97.2 0.0034 8.6E-08 43.8 8.6 147 206-353 16-194 (369)
112 PRK12727 flagellar biosynthesi 97.2 0.008 2E-07 40.9 10.6 93 216-330 345-441 (557)
113 PRK13633 cobalt transporter AT 97.2 0.0082 2.1E-07 40.9 10.6 175 208-428 26-220 (281)
114 PRK13632 cbiO cobalt transport 97.2 0.0015 3.9E-08 46.4 6.9 173 208-428 25-218 (273)
115 TIGR03265 PhnT2 putative 2-ami 97.2 0.0048 1.2E-07 42.6 9.2 147 206-353 17-195 (353)
116 cd00550 ArsA_ATPase Oxyanion-t 97.2 0.0097 2.5E-07 40.3 10.7 38 221-273 2-39 (254)
117 pfam06068 TIP49 TIP49 C-termin 97.2 0.001 2.6E-08 47.7 5.7 69 214-292 45-113 (395)
118 PRK13634 cbiO cobalt transport 97.2 0.0033 8.3E-08 43.9 8.3 188 203-428 4-208 (276)
119 PRK00254 ski2-like helicase; P 97.2 0.014 3.6E-07 39.1 11.5 20 262-282 378-397 (717)
120 PRK10851 sulfate/thiosulfate t 97.2 0.0059 1.5E-07 41.9 9.6 145 207-352 16-196 (352)
121 PRK13409 putative ATPase RIL; 97.2 0.011 2.8E-07 39.9 10.9 177 216-410 362-572 (590)
122 pfam01695 IstB IstB-like ATP b 97.1 0.014 3.5E-07 39.2 11.2 41 216-271 44-84 (178)
123 cd02035 ArsA ArsA ATPase funct 97.1 0.00075 1.9E-08 48.8 4.6 37 221-272 1-37 (217)
124 cd03295 ABC_OpuCA_Osmoprotecti 97.1 0.0066 1.7E-07 41.6 9.5 178 206-428 14-211 (242)
125 TIGR03608 L_ocin_972_ABC putat 97.1 0.013 3.4E-07 39.3 11.0 155 208-392 13-192 (206)
126 cd03238 ABC_UvrA The excision 97.1 0.0042 1.1E-07 43.1 8.3 36 206-241 8-43 (176)
127 cd03233 ABC_PDR_domain1 The pl 97.1 0.026 6.6E-07 37.1 12.3 172 206-427 20-194 (202)
128 smart00487 DEXDc DEAD-like hel 97.1 0.02 5E-07 38.0 11.7 137 220-391 25-167 (201)
129 PRK13647 cbiO cobalt transport 97.1 0.0067 1.7E-07 41.5 9.3 175 205-428 17-213 (273)
130 cd03257 ABC_NikE_OppD_transpor 97.1 0.004 1E-07 43.2 8.1 178 206-428 18-221 (228)
131 PRK10070 glycine betaine trans 97.1 0.014 3.5E-07 39.2 10.8 142 208-350 43-222 (400)
132 cd02037 MRP-like MRP (Multiple 97.1 0.0075 1.9E-07 41.2 9.5 151 221-420 2-154 (169)
133 PRK00771 signal recognition pa 97.1 0.036 9.2E-07 36.0 14.1 144 219-395 97-246 (433)
134 PRK11153 metN DL-methionine tr 97.1 0.0079 2E-07 41.0 9.4 178 205-428 17-216 (343)
135 PRK13646 cbiO cobalt transport 97.1 0.0089 2.3E-07 40.6 9.6 175 207-428 21-221 (286)
136 pfam05621 TniB Bacterial TniB 97.1 0.0094 2.4E-07 40.4 9.7 124 220-391 63-187 (302)
137 TIGR03258 PhnT 2-aminoethylpho 97.0 0.0087 2.2E-07 40.7 9.5 147 206-353 18-199 (362)
138 cd03258 ABC_MetN_methionine_tr 97.0 0.0065 1.7E-07 41.6 8.8 176 206-428 18-216 (233)
139 TIGR02239 recomb_RAD51 DNA rep 97.0 0.018 4.6E-07 38.3 11.0 172 198-399 74-251 (317)
140 PRK11607 potG putrescine trans 97.0 0.006 1.5E-07 41.9 8.6 147 206-353 32-210 (377)
141 PRK09984 phosphonate/organopho 97.0 0.04 1E-06 35.6 12.9 192 206-428 17-228 (262)
142 PRK13652 cbiO cobalt transport 97.0 0.00088 2.2E-08 48.2 4.3 174 206-428 17-213 (277)
143 PRK13636 cbiO cobalt transport 97.0 0.00084 2.1E-08 48.4 4.1 179 204-428 17-217 (285)
144 PRK11124 artP arginine transpo 97.0 0.021 5.3E-07 37.8 11.2 179 208-428 17-216 (242)
145 PRK04841 transcriptional regul 97.0 0.043 1.1E-06 35.4 12.8 12 373-384 714-725 (903)
146 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0077 2E-07 41.1 8.9 134 206-427 13-146 (177)
147 cd03259 ABC_Carb_Solutes_like 97.0 0.015 3.8E-07 38.9 10.4 181 206-428 13-206 (213)
148 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.02 5.1E-07 37.9 11.0 192 208-436 19-222 (254)
149 PRK13644 cbiO cobalt transport 97.0 0.0075 1.9E-07 41.2 8.8 177 205-428 14-210 (274)
150 cd03271 ABC_UvrA_II The excisi 97.0 0.021 5.3E-07 37.8 11.1 73 325-426 169-244 (261)
151 PRK08116 hypothetical protein; 97.0 0.017 4.2E-07 38.6 10.5 42 222-282 111-152 (262)
152 cd03262 ABC_HisP_GlnQ_permease 97.0 0.0064 1.6E-07 41.7 8.4 173 208-427 15-209 (213)
153 cd03250 ABCC_MRP_domain1 Domai 97.0 0.0069 1.7E-07 41.5 8.5 171 208-427 20-201 (204)
154 COG4604 CeuD ABC-type enteroch 97.0 0.017 4.3E-07 38.5 10.5 159 209-395 17-198 (252)
155 PRK11831 putative ABC transpor 97.0 0.0053 1.4E-07 42.3 7.9 175 207-428 22-220 (269)
156 PRK13638 cbiO cobalt transport 97.0 0.016 4.1E-07 38.7 10.3 187 207-428 15-211 (271)
157 PRK13849 putative crown gall t 97.0 0.044 1.1E-06 35.3 12.5 133 223-388 6-144 (231)
158 TIGR02655 circ_KaiC circadian 97.0 0.014 3.6E-07 39.1 9.9 76 202-294 245-321 (484)
159 COG1136 SalX ABC-type antimicr 97.0 0.031 8E-07 36.5 11.7 158 206-392 18-201 (226)
160 cd03225 ABC_cobalt_CbiO_domain 97.0 0.021 5.2E-07 37.8 10.8 182 208-427 16-208 (211)
161 PRK13549 xylose transporter AT 96.9 0.013 3.2E-07 39.4 9.6 74 325-428 405-480 (513)
162 PRK09473 oppD oligopeptide tra 96.9 0.014 3.6E-07 39.1 9.8 180 206-428 29-237 (330)
163 COG1224 TIP49 DNA helicase TIP 96.9 0.0023 5.9E-08 45.0 5.8 66 214-289 60-125 (450)
164 PRK13645 cbiO cobalt transport 96.9 0.0011 2.8E-08 47.5 4.0 192 203-428 21-226 (289)
165 TIGR03410 urea_trans_UrtE urea 96.9 0.018 4.5E-07 38.3 10.2 176 206-428 13-207 (230)
166 PRK09536 btuD corrinoid ABC tr 96.9 0.01 2.6E-07 40.1 8.9 33 208-240 17-49 (409)
167 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.9 0.0062 1.6E-07 41.8 7.8 181 205-428 34-217 (224)
168 PRK10419 nikE nickel transport 96.9 0.0083 2.1E-07 40.8 8.4 178 206-428 25-227 (266)
169 PRK11308 dppF dipeptide transp 96.9 0.015 3.7E-07 38.9 9.6 179 206-428 28-230 (327)
170 cd03298 ABC_ThiQ_thiamine_tran 96.9 0.022 5.5E-07 37.7 10.5 167 216-427 21-203 (211)
171 PRK09841 cryptic autophosphory 96.9 0.0044 1.1E-07 42.9 6.9 47 220-281 533-579 (726)
172 COG1198 PriA Primosomal protei 96.9 0.024 6.2E-07 37.3 10.7 140 214-392 215-357 (730)
173 PRK13643 cbiO cobalt transport 96.9 0.016 4E-07 38.7 9.7 188 202-428 15-219 (288)
174 PRK10867 signal recognition pa 96.9 0.053 1.4E-06 34.7 15.4 145 218-394 99-251 (453)
175 PRK09183 transposase/IS protei 96.9 0.0015 3.9E-08 46.4 4.4 40 216-270 98-137 (258)
176 COG1131 CcmA ABC-type multidru 96.9 0.026 6.7E-07 37.0 10.7 183 206-429 18-213 (293)
177 PRK13547 hmuV hemin importer A 96.8 0.045 1.2E-06 35.2 11.8 185 208-428 16-231 (273)
178 PRK11614 livF leucine/isoleuci 96.8 0.028 7.2E-07 36.8 10.7 178 206-428 18-212 (237)
179 PRK10762 D-ribose transporter 96.8 0.022 5.6E-07 37.6 10.1 172 216-428 275-470 (501)
180 PRK09493 glnQ glutamine ABC tr 96.8 0.032 8.3E-07 36.3 10.9 173 208-428 16-211 (240)
181 PRK11247 ssuB aliphatic sulfon 96.8 0.01 2.6E-07 40.1 8.3 175 208-428 27-209 (257)
182 cd03290 ABCC_SUR1_N The SUR do 96.8 0.0096 2.4E-07 40.4 8.2 178 205-427 13-215 (218)
183 TIGR03415 ABC_choXWV_ATP choli 96.8 0.03 7.6E-07 36.6 10.7 32 209-240 40-71 (382)
184 PRK06731 flhF flagellar biosyn 96.8 0.059 1.5E-06 34.3 13.4 58 220-293 76-136 (270)
185 cd03228 ABCC_MRP_Like The MRP 96.8 0.0074 1.9E-07 41.2 7.5 33 208-240 17-49 (171)
186 COG3842 PotA ABC-type spermidi 96.8 0.0075 1.9E-07 41.2 7.5 149 205-353 17-197 (352)
187 cd03251 ABCC_MsbA MsbA is an e 96.8 0.022 5.5E-07 37.7 9.8 171 209-427 18-210 (234)
188 PRK11819 putative ABC transpor 96.8 0.021 5.2E-07 37.8 9.7 32 209-240 340-371 (556)
189 pfam07015 VirC1 VirC1 protein. 96.8 0.057 1.5E-06 34.5 11.9 136 224-394 7-151 (231)
190 TIGR02639 ClpA ATP-dependent C 96.8 0.0046 1.2E-07 42.8 6.4 87 176-274 185-275 (774)
191 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0089 2.3E-07 40.6 7.8 92 208-325 14-108 (157)
192 TIGR01011 rpsB_bact ribosomal 96.8 0.045 1.1E-06 35.3 11.4 151 214-397 19-193 (227)
193 PRK01172 ski2-like helicase; P 96.8 0.032 8.3E-07 36.3 10.7 12 261-272 235-246 (674)
194 PRK10908 cell division protein 96.8 0.013 3.4E-07 39.2 8.7 175 206-428 15-212 (222)
195 PRK10261 glutathione transport 96.8 0.016 4E-07 38.7 9.0 256 208-502 339-617 (623)
196 cd03297 ABC_ModC_molybdenum_tr 96.8 0.012 3E-07 39.7 8.3 167 218-427 22-206 (214)
197 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.022 5.5E-07 37.7 9.7 83 209-325 16-98 (144)
198 cd03218 ABC_YhbG The ABC trans 96.8 0.038 9.7E-07 35.8 10.8 175 206-428 13-208 (232)
199 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.0094 2.4E-07 40.4 7.7 163 214-427 20-190 (246)
200 PRK09694 hypothetical protein; 96.8 0.062 1.6E-06 34.2 11.9 151 217-392 302-480 (878)
201 PRK11519 tyrosine kinase; Prov 96.8 0.012 3E-07 39.7 8.2 46 221-281 529-574 (720)
202 TIGR03269 met_CoM_red_A2 methy 96.8 0.012 3.1E-07 39.5 8.3 75 325-428 427-503 (520)
203 PRK11231 fecE iron-dicitrate t 96.8 0.04 1E-06 35.6 10.9 175 207-428 16-213 (255)
204 PRK09700 D-allose transporter 96.8 0.02 5E-07 38.0 9.3 191 206-428 276-484 (510)
205 PRK10771 thiQ thiamine transpo 96.8 0.017 4.3E-07 38.5 9.0 172 216-428 22-205 (233)
206 cd03232 ABC_PDR_domain2 The pl 96.7 0.021 5.2E-07 37.8 9.3 162 206-428 20-184 (192)
207 cd03236 ABC_RNaseL_inhibitor_d 96.7 0.016 4.1E-07 38.6 8.8 74 325-428 139-214 (255)
208 PRK07952 DNA replication prote 96.7 0.039 9.9E-07 35.7 10.7 43 222-283 99-141 (242)
209 PRK13538 cytochrome c biogenes 96.7 0.028 7.1E-07 36.8 9.9 171 208-427 16-201 (204)
210 PRK13631 cbiO cobalt transport 96.7 0.033 8.5E-07 36.2 10.3 174 206-428 39-251 (320)
211 PRK13548 hmuV hemin importer A 96.7 0.069 1.8E-06 33.8 13.6 175 207-428 16-215 (257)
212 cd00009 AAA The AAA+ (ATPases 96.7 0.023 5.8E-07 37.5 9.4 39 218-271 18-56 (151)
213 COG4608 AppF ABC-type oligopep 96.7 0.036 9.1E-07 36.0 10.4 130 206-350 26-167 (268)
214 COG1419 FlhF Flagellar GTP-bin 96.7 0.05 1.3E-06 34.9 11.1 89 218-327 202-293 (407)
215 PRK03839 putative kinase; Prov 96.7 0.037 9.5E-07 35.9 10.4 22 221-242 2-23 (180)
216 cd03270 ABC_UvrA_I The excisio 96.7 0.038 9.7E-07 35.8 10.5 184 208-426 10-211 (226)
217 COG1116 TauB ABC-type nitrate/ 96.7 0.025 6.4E-07 37.2 9.5 167 206-392 16-189 (248)
218 PRK13651 cobalt transporter AT 96.7 0.0019 4.9E-08 45.7 3.8 177 203-428 17-236 (304)
219 cd03224 ABC_TM1139_LivF_branch 96.7 0.025 6.4E-07 37.2 9.4 178 206-428 13-207 (222)
220 PRK10619 histidine/lysine/argi 96.7 0.04 1E-06 35.6 10.4 74 325-428 152-227 (257)
221 PRK10982 galactose/methyl gala 96.7 0.02 5.2E-07 37.9 8.9 74 325-428 391-466 (491)
222 PRK10535 macrolide transporter 96.7 0.045 1.2E-06 35.2 10.7 20 216-235 31-50 (648)
223 COG4988 CydD ABC-type transpor 96.7 0.049 1.3E-06 34.9 10.8 168 216-427 344-528 (559)
224 cd03254 ABCC_Glucan_exporter_l 96.7 0.0091 2.3E-07 40.5 7.1 172 208-427 18-211 (229)
225 PRK13541 cytochrome c biogenes 96.7 0.035 8.9E-07 36.1 10.0 29 212-240 19-47 (195)
226 COG1122 CbiO ABC-type cobalt t 96.7 0.011 2.7E-07 40.0 7.4 176 207-427 18-213 (235)
227 PRK08939 primosomal protein Dn 96.7 0.038 9.7E-07 35.8 10.2 131 214-383 154-296 (306)
228 pfam01656 CbiA CobQ/CobB/MinD/ 96.6 0.019 4.9E-07 38.0 8.5 37 222-273 2-38 (212)
229 cd03267 ABC_NatA_like Similar 96.6 0.022 5.5E-07 37.7 8.7 181 206-428 34-229 (236)
230 PRK09544 znuC high-affinity zi 96.6 0.014 3.5E-07 39.2 7.7 171 208-428 19-196 (251)
231 PRK04195 replication factor C 96.6 0.031 8E-07 36.4 9.5 22 221-242 42-63 (403)
232 PRK11022 dppD dipeptide transp 96.6 0.023 5.8E-07 37.5 8.7 179 206-428 20-229 (327)
233 PRK12377 putative replication 96.6 0.0045 1.1E-07 42.9 5.1 37 219-270 101-137 (248)
234 PRK11288 araG L-arabinose tran 96.6 0.022 5.6E-07 37.6 8.6 74 325-428 396-471 (501)
235 pfam01580 FtsK_SpoIIIE FtsK/Sp 96.6 0.044 1.1E-06 35.4 10.1 169 202-392 20-198 (202)
236 cd03246 ABCC_Protease_Secretio 96.6 0.0074 1.9E-07 41.2 6.1 33 208-240 17-49 (173)
237 pfam02374 ArsA_ATPase Anion-tr 96.6 0.011 2.9E-07 39.8 7.0 77 318-397 209-289 (304)
238 cd03213 ABCG_EPDR ABCG transpo 96.6 0.012 3.2E-07 39.5 7.2 165 204-428 20-187 (194)
239 cd03234 ABCG_White The White s 96.6 0.041 1.1E-06 35.5 9.9 177 206-428 20-219 (226)
240 cd03291 ABCC_CFTR1 The CFTR su 96.6 0.026 6.6E-07 37.1 8.8 170 207-427 51-232 (282)
241 PRK11300 livG leucine/isoleuci 96.5 0.03 7.6E-07 36.6 9.1 180 205-428 17-229 (255)
242 PRK13649 cbiO cobalt transport 96.5 0.0052 1.3E-07 42.4 5.1 173 207-428 21-220 (280)
243 COG1205 Distinct helicase fami 96.5 0.061 1.5E-06 34.3 10.6 148 214-391 80-239 (851)
244 PRK10895 putative ABC transpor 96.5 0.022 5.6E-07 37.6 8.3 173 207-428 17-212 (241)
245 PRK13641 cbiO cobalt transport 96.5 0.047 1.2E-06 35.1 9.9 176 206-428 20-220 (286)
246 pfam02492 cobW CobW/HypB/UreG, 96.5 0.035 9E-07 36.1 9.2 61 221-298 2-62 (174)
247 pfam09140 MipZ ATPase MipZ. Mi 96.5 0.061 1.6E-06 34.2 10.4 154 221-390 2-178 (261)
248 PRK13540 cytochrome c biogenes 96.5 0.046 1.2E-06 35.2 9.7 33 208-240 16-48 (200)
249 PRK11819 putative ABC transpor 96.5 0.097 2.5E-06 32.7 11.4 42 297-338 445-488 (556)
250 cd03231 ABC_CcmA_heme_exporter 96.5 0.02 5.1E-07 37.9 7.8 32 209-240 16-47 (201)
251 PRK05667 dnaG DNA primase; Val 96.5 0.097 2.5E-06 32.7 14.9 32 218-249 210-259 (600)
252 PRK13543 cytochrome c biogenes 96.5 0.067 1.7E-06 33.9 10.5 32 209-240 27-58 (214)
253 PRK10247 putative ABC transpor 96.5 0.008 2E-07 40.9 5.7 172 209-426 23-210 (225)
254 PRK13889 conjugal transfer rel 96.5 0.099 2.5E-06 32.6 16.2 141 217-397 360-501 (992)
255 PRK10261 glutathione transport 96.5 0.072 1.8E-06 33.7 10.6 78 273-350 435-521 (623)
256 cd03223 ABCD_peroxisomal_ALDP 96.5 0.033 8.4E-07 36.3 8.8 32 208-239 16-47 (166)
257 COG1120 FepC ABC-type cobalami 96.4 0.025 6.4E-07 37.2 8.2 178 208-429 17-215 (258)
258 cd03226 ABC_cobalt_CbiO_domain 96.4 0.036 9.1E-07 36.0 8.9 179 208-428 15-201 (205)
259 PRK00090 bioD dithiobiotin syn 96.4 0.1 2.6E-06 32.5 11.9 127 221-396 2-145 (223)
260 cd03253 ABCC_ATM1_transporter 96.4 0.067 1.7E-06 33.9 10.3 173 208-428 16-210 (236)
261 COG1123 ATPase components of v 96.4 0.03 7.6E-07 36.6 8.5 178 206-428 304-505 (539)
262 PRK11701 phnK phosphonates tra 96.4 0.033 8.5E-07 36.2 8.7 176 207-428 20-227 (258)
263 pfam09848 DUF2075 Uncharacteri 96.4 0.023 5.9E-07 37.4 7.8 142 220-393 2-158 (348)
264 PRK13546 teichoic acids export 96.4 0.035 9E-07 36.0 8.6 173 205-428 36-218 (264)
265 cd03245 ABCC_bacteriocin_expor 96.4 0.063 1.6E-06 34.1 9.9 173 207-427 18-212 (220)
266 PRK13639 cbiO cobalt transport 96.4 0.0042 1.1E-07 43.1 3.8 175 205-428 14-212 (275)
267 PRK06921 hypothetical protein; 96.4 0.11 2.8E-06 32.3 11.7 41 222-280 119-159 (265)
268 TIGR03411 urea_trans_UrtD urea 96.4 0.11 2.8E-06 32.2 11.8 177 205-428 14-217 (242)
269 COG2909 MalT ATP-dependent tra 96.3 0.11 2.7E-06 32.4 10.9 32 44-75 121-157 (894)
270 PRK13826 Dtr system oriT relax 96.3 0.02 5.2E-07 37.9 7.2 114 218-356 396-510 (1102)
271 PRK13544 consensus 96.3 0.046 1.2E-06 35.2 9.0 32 209-240 17-48 (208)
272 PRK09580 sufC cysteine desulfu 96.3 0.12 3E-06 32.1 11.4 33 208-240 16-48 (248)
273 KOG0061 consensus 96.3 0.037 9.4E-07 35.9 8.4 163 208-392 45-229 (613)
274 PRK13539 cytochrome c biogenes 96.3 0.048 1.2E-06 35.0 9.0 33 208-240 17-49 (206)
275 cd03229 ABC_Class3 This class 96.3 0.02 5E-07 38.0 7.0 160 207-427 14-175 (178)
276 cd03252 ABCC_Hemolysin The ABC 96.3 0.029 7.4E-07 36.7 7.8 172 208-427 17-210 (237)
277 COG1111 MPH1 ERCC4-like helica 96.3 0.12 3.1E-06 31.9 13.1 15 50-64 126-144 (542)
278 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.07 1.8E-06 33.8 9.6 172 208-427 18-211 (238)
279 cd03219 ABC_Mj1267_LivG_branch 96.3 0.065 1.7E-06 34.0 9.4 175 206-428 13-218 (236)
280 cd03266 ABC_NatA_sodium_export 96.2 0.055 1.4E-06 34.6 9.0 175 205-428 17-211 (218)
281 PRK13657 cyclic beta-1,2-gluca 96.2 0.076 1.9E-06 33.5 9.7 174 209-427 351-543 (585)
282 COG0003 ArsA Predicted ATPase 96.2 0.092 2.3E-06 32.9 10.1 34 317-350 209-244 (322)
283 TIGR00956 3a01205 Pleiotropic 96.2 0.0059 1.5E-07 42.0 3.9 151 209-390 843-1023(1466)
284 cd03265 ABC_DrrA DrrA is the A 96.2 0.074 1.9E-06 33.6 9.5 173 206-428 13-207 (220)
285 TIGR03018 pepcterm_TyrKin exop 96.2 0.011 2.9E-07 39.8 5.3 45 221-279 38-82 (207)
286 TIGR00955 3a01204 Pigment prec 96.2 0.084 2.1E-06 33.2 9.7 184 202-426 40-249 (671)
287 KOG2680 consensus 96.2 0.0033 8.4E-08 43.9 2.5 60 214-283 61-120 (454)
288 cd03247 ABCC_cytochrome_bd The 96.2 0.05 1.3E-06 34.9 8.5 34 208-241 17-50 (178)
289 PRK10418 nikD nickel transport 96.2 0.071 1.8E-06 33.7 9.3 187 208-428 18-216 (254)
290 PRK11174 cysteine/glutathione 96.2 0.052 1.3E-06 34.8 8.5 173 209-427 366-557 (588)
291 PRK10789 putative multidrug tr 96.2 0.094 2.4E-06 32.8 9.8 167 216-427 338-523 (569)
292 pfam06414 Zeta_toxin Zeta toxi 96.2 0.089 2.3E-06 33.0 9.7 109 219-350 12-125 (191)
293 cd03289 ABCC_CFTR2 The CFTR su 96.2 0.066 1.7E-06 34.0 9.1 159 208-392 19-195 (275)
294 PRK10636 putative ABC transpor 96.2 0.12 3E-06 32.1 10.3 124 209-339 328-474 (638)
295 PRK10636 putative ABC transpor 96.1 0.084 2.1E-06 33.2 9.4 26 258-283 334-359 (638)
296 TIGR03269 met_CoM_red_A2 methy 96.1 0.1 2.7E-06 32.4 9.9 143 207-350 298-485 (520)
297 PRK10522 multidrug transporter 96.1 0.019 5E-07 38.0 6.1 168 216-427 346-523 (547)
298 pfam03029 ATP_bind_1 Conserved 96.1 0.099 2.5E-06 32.6 9.7 141 224-390 1-160 (234)
299 cd03244 ABCC_MRP_domain2 Domai 96.1 0.1 2.7E-06 32.4 9.8 172 208-427 19-211 (221)
300 cd03110 Fer4_NifH_child This p 96.1 0.051 1.3E-06 34.8 8.2 22 221-242 2-23 (179)
301 TIGR02211 LolD_lipo_ex lipopro 96.1 0.088 2.2E-06 33.0 9.3 140 216-392 28-200 (221)
302 KOG0065 consensus 96.1 0.038 9.7E-07 35.8 7.4 35 206-240 804-838 (1391)
303 pfam06564 YhjQ YhjQ protein. T 96.1 0.041 1E-06 35.6 7.6 34 221-254 4-37 (244)
304 PRK13542 consensus 96.0 0.12 3.1E-06 31.9 9.9 165 209-396 34-210 (224)
305 COG0466 Lon ATP-dependent Lon 96.0 0.16 4.2E-06 31.0 16.9 28 218-245 349-376 (782)
306 PRK13768 GTPase; Provisional 96.0 0.094 2.4E-06 32.8 9.3 144 221-390 4-168 (253)
307 PRK11784 tRNA 2-selenouridine 96.0 0.045 1.1E-06 35.3 7.6 95 200-325 118-214 (333)
308 PRK05580 primosome assembly pr 96.0 0.16 4.2E-06 31.0 12.3 139 219-392 186-326 (699)
309 PRK13766 Hef nuclease; Provisi 96.0 0.14 3.5E-06 31.5 10.1 20 372-391 612-631 (764)
310 TIGR02768 TraA_Ti Ti-type conj 96.0 0.032 8.1E-07 36.4 6.8 149 179-354 384-541 (888)
311 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.043 1.1E-06 35.4 7.4 161 206-428 13-180 (200)
312 pfam00270 DEAD DEAD/DEAH box h 96.0 0.17 4.3E-06 30.9 13.3 140 218-391 13-157 (167)
313 PRK10938 putative molybdenum t 96.0 0.17 4.4E-06 30.8 11.1 167 209-392 276-460 (490)
314 COG2894 MinD Septum formation 96.0 0.11 2.7E-06 32.4 9.3 105 219-350 2-120 (272)
315 TIGR01448 recD_rel helicase, R 96.0 0.033 8.4E-07 36.3 6.7 169 216-407 362-544 (769)
316 cd03268 ABC_BcrA_bacitracin_re 96.0 0.17 4.4E-06 30.8 10.7 173 207-428 14-201 (208)
317 PRK06696 uridine kinase; Valid 95.9 0.021 5.5E-07 37.7 5.7 50 207-271 12-63 (227)
318 TIGR00960 3a0501s02 Type II (G 95.9 0.032 8.2E-07 36.4 6.6 173 202-392 11-196 (216)
319 PHA02518 ParA-like protein; Pr 95.9 0.18 4.5E-06 30.7 12.6 43 223-282 5-47 (211)
320 COG1435 Tdk Thymidine kinase [ 95.9 0.08 2E-06 33.3 8.6 120 217-396 2-121 (201)
321 cd03112 CobW_like The function 95.9 0.076 1.9E-06 33.5 8.4 117 221-355 2-132 (158)
322 cd03240 ABC_Rad50 The catalyti 95.9 0.095 2.4E-06 32.8 8.9 67 334-430 132-199 (204)
323 PRK11144 modC molybdate transp 95.9 0.032 8E-07 36.4 6.5 26 216-241 21-46 (352)
324 PRK11147 ABC transporter ATPas 95.9 0.18 4.6E-06 30.6 10.8 133 209-349 335-493 (632)
325 pfam08433 KTI12 Chromatin asso 95.9 0.11 2.8E-06 32.3 9.2 36 221-271 1-36 (266)
326 cd03260 ABC_PstB_phosphate_tra 95.9 0.046 1.2E-06 35.2 7.3 180 206-428 13-215 (227)
327 cd03278 ABC_SMC_barmotin Barmo 95.9 0.11 2.9E-06 32.2 9.2 36 204-240 7-43 (197)
328 TIGR01587 cas3_core CRISPR-ass 95.9 0.038 9.6E-07 35.8 6.8 158 221-396 1-191 (424)
329 cd03288 ABCC_SUR2 The SUR doma 95.9 0.063 1.6E-06 34.1 7.9 171 209-427 37-228 (257)
330 cd03216 ABC_Carb_Monos_I This 95.9 0.022 5.6E-07 37.6 5.5 35 206-240 13-47 (163)
331 TIGR03574 selen_PSTK L-seryl-t 95.9 0.074 1.9E-06 33.6 8.2 36 221-271 1-36 (249)
332 cd03269 ABC_putative_ATPase Th 95.9 0.15 3.9E-06 31.2 9.8 179 206-428 13-203 (210)
333 TIGR00956 3a01205 Pleiotropic 95.9 0.014 3.6E-07 39.1 4.5 65 175-243 48-112 (1466)
334 COG1124 DppF ABC-type dipeptid 95.9 0.092 2.3E-06 32.9 8.6 170 207-428 21-217 (252)
335 cd03369 ABCC_NFT1 Domain 2 of 95.8 0.1 2.6E-06 32.5 8.8 166 208-428 23-198 (207)
336 PRK10938 putative molybdenum t 95.8 0.19 5E-06 30.4 11.2 144 204-351 297-460 (490)
337 PRK05800 cobU adenosylcobinami 95.8 0.2 5E-06 30.4 11.3 152 219-426 1-161 (170)
338 PRK00149 dnaA chromosomal repl 95.8 0.15 3.8E-06 31.3 9.6 46 222-284 148-193 (447)
339 TIGR02655 circ_KaiC circadian 95.8 0.015 3.7E-07 39.0 4.3 173 202-426 3-189 (484)
340 CHL00131 ycf16 sulfate ABC tra 95.8 0.095 2.4E-06 32.8 8.4 34 208-241 21-54 (252)
341 cd03248 ABCC_TAP TAP, the Tran 95.8 0.11 2.9E-06 32.2 8.8 168 209-427 30-222 (226)
342 COG1203 CRISPR-associated heli 95.8 0.2 5.2E-06 30.3 10.1 165 203-392 198-378 (733)
343 PRK13235 nifH nitrogenase redu 95.8 0.17 4.2E-06 30.9 9.6 147 222-390 4-181 (274)
344 pfam02702 KdpD Osmosensitive K 95.7 0.062 1.6E-06 34.2 7.4 152 217-427 2-162 (211)
345 PRK10744 phosphate transporter 95.7 0.17 4.4E-06 30.8 9.7 177 207-428 24-227 (257)
346 KOG0989 consensus 95.7 0.081 2.1E-06 33.3 7.8 34 209-243 48-81 (346)
347 PRK07667 uridine kinase; Provi 95.7 0.026 6.6E-07 37.1 5.2 111 219-355 13-128 (190)
348 pfam02283 CobU Cobinamide kina 95.7 0.22 5.7E-06 29.9 10.6 146 223-426 2-158 (166)
349 PRK10790 putative multidrug tr 95.7 0.09 2.3E-06 33.0 7.9 175 208-427 356-548 (593)
350 TIGR02673 FtsE cell division A 95.7 0.089 2.3E-06 33.0 7.9 166 202-392 11-195 (215)
351 TIGR00630 uvra excinuclease AB 95.7 0.19 4.8E-06 30.5 9.6 31 216-246 662-692 (956)
352 KOG0739 consensus 95.6 0.043 1.1E-06 35.4 6.3 127 202-401 151-294 (439)
353 TIGR02928 TIGR02928 orc1/cdc6 95.6 0.16 4E-06 31.1 9.1 98 208-315 32-136 (383)
354 COG0489 Mrp ATPases involved i 95.6 0.24 6E-06 29.8 11.4 42 221-277 60-101 (265)
355 COG0488 Uup ATPase components 95.6 0.2 5.2E-06 30.2 9.6 124 209-339 338-483 (530)
356 TIGR02773 addB_Gpos ATP-depend 95.6 0.24 6E-06 29.7 10.5 18 42-59 388-405 (1192)
357 PRK11160 cysteine/glutathione 95.6 0.13 3.2E-06 31.8 8.5 167 216-427 364-548 (575)
358 COG3638 ABC-type phosphate/pho 95.6 0.072 1.8E-06 33.7 7.2 167 203-394 14-209 (258)
359 COG1160 Predicted GTPases [Gen 95.6 0.064 1.6E-06 34.1 6.9 18 222-239 181-198 (444)
360 TIGR02545 ATP_syn_fliI flagell 95.6 0.007 1.8E-07 41.4 2.0 40 202-243 142-182 (439)
361 cd03215 ABC_Carb_Monos_II This 95.6 0.02 5E-07 38.0 4.3 162 208-427 15-178 (182)
362 PRK11176 lipid transporter ATP 95.5 0.23 5.8E-06 29.9 9.7 174 209-427 358-551 (581)
363 PRK09700 D-allose transporter 95.5 0.25 6.3E-06 29.6 10.3 53 297-350 409-466 (510)
364 PRK10037 cell division protein 95.5 0.17 4.2E-06 30.9 8.9 36 221-271 4-39 (250)
365 TIGR02203 MsbA_lipidA lipid A 95.5 0.034 8.7E-07 36.2 5.3 149 204-357 373-580 (603)
366 COG0464 SpoVK ATPases of the A 95.5 0.26 6.6E-06 29.5 11.5 28 215-242 272-299 (494)
367 TIGR03029 EpsG chain length de 95.5 0.035 8.8E-07 36.1 5.3 49 218-281 103-151 (274)
368 PRK10787 DNA-binding ATP-depen 95.5 0.26 6.6E-06 29.5 13.7 29 217-245 347-375 (784)
369 PRK11147 ABC transporter ATPas 95.5 0.26 6.6E-06 29.5 11.9 26 259-284 342-367 (632)
370 TIGR02546 III_secr_ATP type II 95.4 0.0081 2.1E-07 40.9 2.0 39 202-243 137-177 (430)
371 cd02025 PanK Pantothenate kina 95.4 0.074 1.9E-06 33.6 6.9 109 221-358 1-118 (220)
372 cd00046 DEXDc DEAD-like helica 95.4 0.27 6.8E-06 29.4 11.4 136 222-391 3-141 (144)
373 COG1135 AbcC ABC-type metal io 95.4 0.12 3.1E-06 32.0 7.9 35 204-238 17-51 (339)
374 cd02038 FleN-like FleN is a me 95.4 0.03 7.6E-07 36.6 4.8 38 221-273 2-39 (139)
375 PRK03695 vitamin B12-transport 95.4 0.19 4.9E-06 30.4 8.9 178 209-428 13-205 (245)
376 cd03230 ABC_DR_subfamily_A Thi 95.4 0.049 1.2E-06 35.0 5.8 155 207-428 14-170 (173)
377 cd01133 F1-ATPase_beta F1 ATP 95.4 0.031 7.9E-07 36.5 4.8 44 202-246 53-96 (274)
378 TIGR03015 pepcterm_ATPase puta 95.4 0.24 6.1E-06 29.7 9.3 68 208-291 31-100 (269)
379 pfam02562 PhoH PhoH-like prote 95.4 0.1 2.6E-06 32.5 7.4 129 216-353 16-157 (205)
380 PRK12422 chromosomal replicati 95.4 0.24 6E-06 29.8 9.2 46 221-286 144-189 (455)
381 COG1484 DnaC DNA replication p 95.3 0.051 1.3E-06 34.8 5.6 47 218-283 104-150 (254)
382 PRK09270 frcK putative fructos 95.3 0.091 2.3E-06 32.9 6.9 110 220-356 35-151 (230)
383 CHL00060 atpB ATP synthase CF1 95.3 0.025 6.4E-07 37.2 4.0 45 202-247 139-183 (480)
384 PRK10982 galactose/methyl gala 95.3 0.3 7.6E-06 29.0 9.9 32 209-240 264-295 (491)
385 PRK12402 replication factor C 95.3 0.12 3E-06 32.1 7.4 22 222-243 39-60 (337)
386 TIGR01842 type_I_sec_PrtD type 95.2 0.13 3.3E-06 31.7 7.6 150 216-392 353-524 (556)
387 COG2884 FtsE Predicted ATPase 95.2 0.12 3E-06 32.1 7.3 44 202-246 11-54 (223)
388 PTZ00243 ABC transporter; Prov 95.2 0.31 7.8E-06 28.9 9.6 110 215-325 682-810 (1560)
389 PRK11264 putative amino-acid A 95.2 0.31 7.9E-06 28.9 13.3 174 208-428 16-217 (248)
390 COG4525 TauB ABC-type taurine 95.2 0.26 6.6E-06 29.5 9.0 162 209-391 21-190 (259)
391 KOG0780 consensus 95.2 0.31 7.9E-06 28.8 17.0 94 213-325 95-193 (483)
392 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.31 8E-06 28.8 10.6 39 220-273 39-77 (226)
393 PRK00411 cdc6 cell division co 95.2 0.31 8E-06 28.8 11.5 31 457-487 351-382 (394)
394 PRK09112 DNA polymerase III su 95.2 0.062 1.6E-06 34.2 5.8 26 220-245 46-71 (352)
395 COG0444 DppD ABC-type dipeptid 95.2 0.32 8.1E-06 28.8 10.8 184 206-427 18-228 (316)
396 PRK13764 ATPase; Provisional 95.2 0.019 4.7E-07 38.2 3.1 32 218-249 258-289 (605)
397 PRK13549 xylose transporter AT 95.2 0.32 8.1E-06 28.8 11.6 33 208-240 277-309 (513)
398 COG1855 ATPase (PilT family) [ 95.2 0.024 6.1E-07 37.3 3.6 41 208-248 250-292 (604)
399 KOG0733 consensus 95.1 0.042 1.1E-06 35.5 4.8 30 214-243 218-247 (802)
400 PRK04213 GTP-binding protein; 95.1 0.051 1.3E-06 34.8 5.3 19 221-239 3-21 (195)
401 COG4987 CydC ABC-type transpor 95.1 0.33 8.3E-06 28.7 9.8 125 209-350 354-499 (573)
402 COG4963 CpaE Flp pilus assembl 95.1 0.33 8.4E-06 28.7 10.1 181 214-417 100-299 (366)
403 PRK05632 phosphate acetyltrans 95.1 0.33 8.5E-06 28.6 11.0 131 200-348 243-396 (702)
404 TIGR03375 type_I_sec_LssB type 95.1 0.31 8E-06 28.8 9.2 171 209-427 481-673 (694)
405 PRK06851 hypothetical protein; 95.1 0.33 8.5E-06 28.6 9.4 42 203-246 200-242 (368)
406 PRK06835 DNA replication prote 95.1 0.039 1E-06 35.7 4.6 43 220-281 184-226 (330)
407 cd03263 ABC_subfamily_A The AB 95.1 0.34 8.6E-06 28.6 10.4 176 207-428 16-207 (220)
408 TIGR02173 cyt_kin_arch cytidyl 95.1 0.017 4.3E-07 38.5 2.6 73 221-321 2-78 (173)
409 COG1123 ATPase components of v 95.1 0.32 8.2E-06 28.7 9.2 32 209-240 25-56 (539)
410 COG1474 CDC6 Cdc6-related prot 95.0 0.25 6.3E-06 29.6 8.5 34 209-243 33-66 (366)
411 TIGR00345 arsA arsenite-activa 95.0 0.029 7.3E-07 36.7 3.7 29 325-356 238-268 (330)
412 PRK13767 ATP-dependent helicas 95.0 0.35 9E-06 28.4 12.3 14 297-310 459-472 (878)
413 COG1118 CysA ABC-type sulfate/ 95.0 0.35 9E-06 28.4 9.7 36 205-240 14-49 (345)
414 COG4172 ABC-type uncharacteriz 95.0 0.2 5.2E-06 30.2 8.0 167 206-392 300-485 (534)
415 pfam05729 NACHT NACHT domain. 95.0 0.049 1.2E-06 35.0 4.8 26 221-246 2-27 (165)
416 cd02040 NifH NifH gene encodes 95.0 0.048 1.2E-06 35.1 4.7 40 221-275 3-42 (270)
417 PRK08769 DNA polymerase III su 94.9 0.1 2.6E-06 32.5 6.2 134 219-353 26-182 (319)
418 pfam00142 Fer4_NifH 4Fe-4S iro 94.9 0.052 1.3E-06 34.8 4.6 40 221-275 2-41 (269)
419 COG0378 HypB Ni2+-binding GTPa 94.8 0.14 3.5E-06 31.5 6.8 80 220-316 14-93 (202)
420 PRK01077 cobyrinic acid a,c-di 94.8 0.37 9.3E-06 28.3 9.0 30 372-402 312-345 (451)
421 PRK10490 sensor protein KdpD; 94.8 0.21 5.3E-06 30.2 7.7 17 271-287 657-673 (895)
422 PRK09280 F0F1 ATP synthase sub 94.8 0.041 1E-06 35.6 4.0 44 202-247 129-173 (466)
423 TIGR03345 VI_ClpV1 type VI sec 94.8 0.097 2.5E-06 32.7 5.9 96 179-287 167-274 (852)
424 TIGR03522 GldA_ABC_ATP gliding 94.8 0.36 9.2E-06 28.4 8.8 35 206-240 15-49 (301)
425 COG1618 Predicted nucleotide k 94.8 0.043 1.1E-06 35.4 4.1 147 222-426 8-159 (179)
426 PRK10762 D-ribose transporter 94.8 0.4 1E-05 28.0 10.8 53 297-350 395-452 (501)
427 COG1129 MglA ABC-type sugar tr 94.8 0.4 1E-05 28.0 9.9 168 216-427 282-475 (500)
428 PRK13545 tagH teichoic acids e 94.7 0.41 1E-05 28.0 10.9 30 206-235 37-66 (549)
429 cd02028 UMPK_like Uridine mono 94.7 0.05 1.3E-06 34.9 4.3 105 221-356 1-111 (179)
430 TIGR01968 minD_bact septum sit 94.6 0.088 2.3E-06 33.0 5.3 139 220-414 2-154 (272)
431 COG1125 OpuBA ABC-type proline 94.6 0.25 6.4E-06 29.6 7.7 162 205-392 13-194 (309)
432 TIGR00763 lon ATP-dependent pr 94.6 0.051 1.3E-06 34.9 4.1 29 217-245 447-476 (941)
433 COG1126 GlnQ ABC-type polar am 94.6 0.35 9E-06 28.4 8.4 175 206-428 15-211 (240)
434 PRK08233 hypothetical protein; 94.6 0.14 3.6E-06 31.5 6.3 25 219-243 3-27 (182)
435 COG0052 RpsB Ribosomal protein 94.6 0.44 1.1E-05 27.7 13.0 142 222-399 30-194 (252)
436 PRK09518 bifunctional cytidyla 94.6 0.11 2.8E-06 32.3 5.7 66 172-239 208-299 (714)
437 PRK07471 DNA polymerase III su 94.6 0.12 3.2E-06 31.9 6.0 27 219-245 39-65 (363)
438 cd02036 MinD Bacterial cell di 94.5 0.063 1.6E-06 34.2 4.4 36 222-272 3-38 (179)
439 COG0455 flhG Antiactivator of 94.5 0.066 1.7E-06 34.0 4.5 43 221-277 5-47 (262)
440 KOG0744 consensus 94.5 0.46 1.2E-05 27.6 8.9 71 219-312 177-247 (423)
441 TIGR02770 nickel_nikD nickel i 94.5 0.25 6.5E-06 29.5 7.5 132 215-350 8-190 (239)
442 PRK08084 DNA replication initi 94.5 0.32 8.1E-06 28.8 8.0 101 219-335 45-156 (235)
443 PRK11034 clpA ATP-dependent Cl 94.5 0.18 4.6E-06 30.7 6.7 95 180-285 167-271 (758)
444 pfam03266 DUF265 Protein of un 94.4 0.067 1.7E-06 33.9 4.4 126 222-392 2-133 (168)
445 CHL00175 minD septum-site dete 94.4 0.078 2E-06 33.4 4.7 38 214-252 10-47 (279)
446 cd03111 CpaE_like This protein 94.4 0.08 2E-06 33.3 4.7 40 221-274 2-41 (106)
447 pfam02421 FeoB_N Ferrous iron 94.4 0.047 1.2E-06 35.1 3.5 18 222-239 2-19 (188)
448 PRK03992 proteasome-activating 94.4 0.49 1.2E-05 27.4 9.8 54 182-243 137-190 (390)
449 TIGR02324 CP_lyasePhnL phospho 94.4 0.24 6.1E-06 29.7 7.1 149 206-355 21-211 (224)
450 PRK05642 DNA replication initi 94.4 0.49 1.2E-05 27.4 8.7 38 220-272 46-83 (234)
451 cd02042 ParA ParA and ParB of 94.4 0.33 8.3E-06 28.7 7.8 35 224-273 5-39 (104)
452 COG1132 MdlB ABC-type multidru 94.4 0.18 4.6E-06 30.7 6.5 178 202-427 334-537 (567)
453 TIGR03305 alt_F1F0_F1_bet alte 94.3 0.045 1.1E-06 35.3 3.3 44 202-247 122-166 (449)
454 cd00544 CobU Adenosylcobinamid 94.3 0.49 1.3E-05 27.3 10.5 148 221-426 1-161 (169)
455 PRK05564 DNA polymerase III su 94.3 0.37 9.5E-06 28.3 8.0 28 218-245 25-52 (313)
456 PRK11288 araG L-arabinose tran 94.3 0.5 1.3E-05 27.3 10.1 25 216-240 276-300 (501)
457 pfam00006 ATP-synt_ab ATP synt 94.3 0.11 2.7E-06 32.4 5.2 41 204-245 1-41 (213)
458 TIGR03167 tRNA_sel_U_synt tRNA 94.3 0.26 6.7E-06 29.4 7.2 97 200-325 103-206 (311)
459 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.34 8.7E-06 28.5 7.7 130 218-389 2-133 (159)
460 PRK00349 uvrA excinuclease ABC 94.2 0.51 1.3E-05 27.2 11.0 56 296-352 488-550 (944)
461 COG0563 Adk Adenylate kinase a 94.2 0.2 5.1E-06 30.3 6.5 145 222-392 3-157 (178)
462 PRK12597 F0F1 ATP synthase sub 94.2 0.042 1.1E-06 35.4 3.0 44 202-246 125-168 (459)
463 PRK06871 DNA polymerase III su 94.2 0.38 9.7E-06 28.2 7.9 142 208-353 9-175 (324)
464 cd02023 UMPK Uridine monophosp 94.2 0.07 1.8E-06 33.8 4.1 105 221-356 1-111 (198)
465 PRK10818 cell division inhibit 94.2 0.092 2.3E-06 32.9 4.7 33 221-253 5-37 (270)
466 TIGR02640 gas_vesic_GvpN gas v 94.2 0.082 2.1E-06 33.3 4.4 57 216-293 18-75 (265)
467 COG1223 Predicted ATPase (AAA+ 94.2 0.54 1.4E-05 27.1 9.0 29 211-240 144-172 (368)
468 KOG0057 consensus 94.1 0.54 1.4E-05 27.0 9.2 27 212-238 367-397 (591)
469 PRK10078 ribose 1,5-bisphospho 94.1 0.44 1.1E-05 27.7 8.0 21 219-239 2-22 (184)
470 COG0514 RecQ Superfamily II DN 94.1 0.55 1.4E-05 27.0 11.4 17 50-69 112-128 (590)
471 TIGR00614 recQ_fam ATP-depende 94.1 0.55 1.4E-05 27.0 10.8 153 205-391 16-175 (497)
472 COG1674 FtsK DNA segregation A 94.0 0.56 1.4E-05 26.9 9.6 145 219-393 531-683 (858)
473 pfam00406 ADK Adenylate kinase 94.0 0.53 1.4E-05 27.1 8.3 101 225-350 2-109 (186)
474 PRK08903 hypothetical protein; 94.0 0.56 1.4E-05 26.9 11.9 53 208-275 31-83 (227)
475 TIGR02769 nickel_nikE nickel i 94.0 0.47 1.2E-05 27.5 8.1 31 208-238 27-57 (267)
476 PRK08927 fliI flagellum-specif 94.0 0.078 2E-06 33.4 4.0 42 202-244 142-183 (441)
477 TIGR01187 potA polyamine ABC t 94.0 0.41 1E-05 27.9 7.7 165 268-433 65-254 (331)
478 PRK13695 putative NTPase; Prov 94.0 0.081 2.1E-06 33.3 4.0 136 222-412 6-146 (174)
479 cd01135 V_A-ATPase_B V/A-type 94.0 0.071 1.8E-06 33.7 3.7 44 202-246 53-96 (276)
480 PRK05986 cob(I)yrinic acid a,c 93.9 0.27 7E-06 29.3 6.7 130 216-389 20-152 (190)
481 COG2205 KdpD Osmosensitive K+ 93.9 0.35 8.9E-06 28.5 7.2 149 197-360 579-774 (890)
482 PTZ00088 adenylate kinase 1; P 93.9 0.28 7.2E-06 29.2 6.7 98 222-348 3-110 (225)
483 CHL00195 ycf46 Ycf46; Provisio 93.9 0.6 1.5E-05 26.7 14.7 30 214-243 254-283 (491)
484 pfam03215 Rad17 Rad17 cell cyc 93.8 0.53 1.4E-05 27.1 8.0 35 209-243 35-69 (490)
485 PRK13230 nitrogenase reductase 93.8 0.11 2.9E-06 32.2 4.5 37 221-272 3-39 (292)
486 TIGR03371 cellulose_yhjQ cellu 93.8 0.068 1.7E-06 33.9 3.4 52 221-275 4-55 (246)
487 PRK13341 recombination factor 93.8 0.27 6.8E-06 29.4 6.4 61 77-137 234-304 (726)
488 COG1157 FliI Flagellar biosynt 93.8 0.23 5.8E-06 29.9 6.0 42 200-243 145-187 (441)
489 PRK11664 ATP-dependent RNA hel 93.7 0.63 1.6E-05 26.5 8.4 10 305-314 385-394 (812)
490 TIGR01166 cbiO cobalt ABC tran 93.7 0.64 1.6E-05 26.5 10.0 124 216-348 15-182 (190)
491 COG4133 CcmA ABC-type transpor 93.7 0.45 1.1E-05 27.6 7.4 118 204-327 16-160 (209)
492 cd01983 Fer4_NifH The Fer4_Nif 93.7 0.11 2.9E-06 32.2 4.4 33 222-269 2-34 (99)
493 CHL00095 clpC Clp protease ATP 93.6 0.65 1.7E-05 26.4 18.7 97 180-287 160-266 (823)
494 KOG0054 consensus 93.6 0.65 1.7E-05 26.4 11.4 109 216-325 544-671 (1381)
495 TIGR03498 FliI_clade3 flagella 93.6 0.086 2.2E-06 33.1 3.7 42 202-244 124-165 (418)
496 PRK03846 adenylylsulfate kinas 93.6 0.66 1.7E-05 26.4 8.6 105 214-350 20-129 (198)
497 pfam00580 UvrD-helicase UvrD/R 93.6 0.43 1.1E-05 27.8 7.2 89 217-317 12-101 (494)
498 cd02021 GntK Gluconate kinase 93.6 0.36 9.3E-06 28.3 6.8 105 221-350 1-105 (150)
499 TIGR01618 phage_P_loop phage n 93.6 0.43 1.1E-05 27.7 7.2 150 221-413 15-171 (229)
500 pfam00004 AAA ATPase family as 93.6 0.33 8.5E-06 28.6 6.6 105 222-391 1-108 (131)
No 1
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=992.43 Aligned_cols=480 Identities=65% Similarity=1.018 Sum_probs=450.3
Q ss_pred CHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHC
Q ss_conf 01026789978999999999832978999999442966637988899999999999839986864388897317983235
Q gi|254780332|r 17 SSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGEL 96 (504)
Q Consensus 17 ~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~i 96 (504)
....|+||||+|||++||||||++|+++++|.++|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++.+.++++
T Consensus 3 ~~~~r~~P~~~eAE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~itv~~~L~~~~~l~~v 82 (484)
T PRK09165 3 EPLYREAPHNIEAEQALLGAILINNRALYRVSDFLKPEHFFEPLHQRIYEAIAKIIRKGKLATPVTLKTFLENDEALGEL 82 (484)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHC
T ss_conf 87668999988999999999984910799998527987779899999999999999769998798999998645872322
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 94899999996221122236778787899999999987655677512344453156668765544443201134466543
Q gi|254780332|r 97 TVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFH 176 (504)
Q Consensus 97 gg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~ 176 (504)
||..||.+|+..+|+++|+.+||++|+++|++|+++..+.++.+.+++...+..+...++.+++.++++++......++.
T Consensus 83 GG~~yL~~L~~~~~s~an~~~Ya~iV~e~a~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~ae~~l~~l~~~~~~~~~~~ 162 (484)
T PRK09165 83 GGVQYLAKLATEAVTIINARDYGRIIYDLALRRELIGIGEDIVNNAYDAPVDVAPKEQIEDAEQKLYELAETGRYEGGFQ 162 (484)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 77999999997088777899999999888899999999999999973577676789999999999999985476788841
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01343367789999987411236644321013776556416772677621310027699999999998510111233333
Q gi|254780332|r 177 TFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS 256 (504)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~ 256 (504)
++.+.+.++++.++++.++++.++|+||||+.||++|+||+||+|+|||||||||||+||+|||.|+|+..+........
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~Gi~TGf~~LD~~t~G~~~GdLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~ 242 (484)
T PRK09165 163 SFGTAITEAVDMANAAFKRDGHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGS 242 (484)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 59999999999999998379997733158445998715888773799960799977899999999999874102222332
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf 21247975899958521799987899998741011000121376889989999999862780782589988999999886
Q gi|254780332|r 257 YKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR 336 (504)
Q Consensus 257 ~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r 336 (504)
....+|++|+||||||+.+|++.|++|+.++|+.++|++|++++++|.++..++.++.++||||+|+|++|+.+|+++||
T Consensus 243 ~~~~~g~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~R 322 (484)
T PRK09165 243 KKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISALRARAR 322 (484)
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 11368984899947799999999999997268613554489999999999999999971984897799987999999999
Q ss_pred HHCCCCCCCEEEECCHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 402244474677671353256644-3211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 337 RLKRQRGLDLLIVDYIQLMTTSKK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 337 ~~~~~~gi~~vvIDYLqli~~~~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
+++++||+++|||||||||+++++ ..+||++||++|||+||.||||++||||+||||||++|+|+||||+||||||||+
T Consensus 323 r~k~~~gl~livIDYLqLi~~~~~~~~~~R~~ev~~Isr~LK~lAkel~ipVi~LsQLnR~~E~R~dkrP~lsDLReSGs 402 (484)
T PRK09165 323 RLKRQHGLDLLVIDYLQLIRGSSKRSQDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGS 402 (484)
T ss_pred HHHHHHCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99986099889995176357888886121999999999999999999699699974578442347999976001035552
Q ss_pred HHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCCC
Q ss_conf 23313878897255661644233332221110000001123388389999740899725999997468540200774466
Q gi|254780332|r 416 IEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSSY 495 (504)
Q Consensus 416 IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~~ 495 (504)
||||||+|+|||||+||..+++|...+ .....|+...+..+|++||||||||||++|+|.|.|+++++||.|++++.|
T Consensus 403 IEQDADvV~flyR~~yY~~~~~~~~~~--~~~~~~~~~~~~~~~~~elivaKnRnG~~G~v~l~f~~~~~rF~dla~~~~ 480 (484)
T PRK09165 403 IEQDADVVMFVYREEYYLKRKEPREGT--PKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLHFESEFTRFGDLADDSY 480 (484)
T ss_pred HHHCCCEEEEECCHHHHCCCCCCCCCC--CCHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 022077899964476613445877675--201223210124588079999637889860699998778776227888668
Q ss_pred CCC
Q ss_conf 777
Q gi|254780332|r 496 QTG 498 (504)
Q Consensus 496 ~~~ 498 (504)
.|.
T Consensus 481 ~~~ 483 (484)
T PRK09165 481 LPE 483 (484)
T ss_pred CCC
T ss_conf 999
No 2
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=947.54 Aligned_cols=458 Identities=38% Similarity=0.624 Sum_probs=430.1
Q ss_pred CCHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 11235527854301026789978999999999832978999999442966637988899999999999839986864388
Q gi|254780332|r 5 AQDIILSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVK 84 (504)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~ 84 (504)
-|+...--|+|.....|+||||+|||++||||||++|++++.|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.
T Consensus 15 ~~~~~~~~~~~~~~~~r~pPhniEAEqaVLGalLl~~~~~~~v~~~L~pedFY~~~H~~IF~ai~~L~~~g~piD~vTv~ 94 (476)
T PRK08760 15 RDDDDYDRPEPRVDQLRVPPHSVEAEQAVLGGLMLAPDALDKVNDQLTENDFYRRDHRLIYRAIRELSEKDRPFDAVTLG 94 (476)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 77312589996411058999988999999999990830899999754987679888999999999999779988799999
Q ss_pred HHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89731798323594899999996221122236778787899999999987655677512344453156668765544443
Q gi|254780332|r 85 TFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFH 164 (504)
Q Consensus 85 ~~L~~~~~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~ 164 (504)
++|++.+.++++||..||.+|+..+||++|+.+||++|+++|++|+++.++.++++.+++... .+...+++.+++.++.
T Consensus 95 ~~L~~~~~le~iGG~~YL~~L~~~~ps~an~~~Ya~iVkeks~~R~li~~~~~i~~~a~~~~~-~d~~eil~~ae~~i~~ 173 (476)
T PRK08760 95 EWFESQGKLEQVGDGAYLIELASTTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEG-RESIELLASAEKAVFK 173 (476)
T ss_pred HHHHHCCCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHH
T ss_conf 999647982324889999999971898889999999999999999999999999998637567-8789999999999999
Q ss_pred HHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 20113-44665430134336778999998741123664432101377655641677267762131002769999999999
Q gi|254780332|r 165 LAENG-RYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 165 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
+.+.. +...++.++.+.+.++++.++++.++++.++|+||||+.||++|+||+||+|+|||||||||||+||+|+|.|+
T Consensus 174 i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTalalnia~~~ 253 (476)
T PRK08760 174 IAEAGARGRTDFVAMPGALKDAFEELRNRFENGGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYA 253 (476)
T ss_pred HHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98605767777300999999999999999857999533677968899744699877779998778874789999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC
Q ss_conf 85101112333332124797589995852179998789999874101100012137688998999999986278078258
Q gi|254780332|r 244 ADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT 323 (504)
Q Consensus 244 A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~ 323 (504)
|.. +|++|+||||||+.+|++.|++|+.++|++++|++|.+++++|.++..++.++.++||||+|+
T Consensus 254 A~~--------------~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idD~ 319 (476)
T PRK08760 254 AIK--------------SKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDT 319 (476)
T ss_pred HHH--------------CCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 983--------------799789970369999999999998338976777648999999999999999986088168579
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 99889999998864022444746776713532566443211378899999999999988279199977138220168999
Q gi|254780332|r 324 GGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNK 403 (504)
Q Consensus 324 ~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~k 403 (504)
|++|+.+|+++||++++++|+++|||||||||..+++. .+|.++|++|||+||.|||||+||||+||||||++|+|.||
T Consensus 320 ~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~~-~~r~~~v~~isr~lK~lAkel~vpVi~LsQLnR~~e~R~dk 398 (476)
T PRK08760 320 PGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNS-ENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDK 398 (476)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
T ss_conf 99999999999999987279987999707641588887-44889999999999999999799789963157663447999
Q ss_pred CCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 98401014324223313878897255661644233332221110000001123388389999740899725999997468
Q gi|254780332|r 404 RPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAE 483 (504)
Q Consensus 404 rP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~ 483 (504)
||+||||||||+||||||+|+|||||+||+++..+ .+|.+||||||||||++|+|.|.|+++
T Consensus 399 rP~lsDLReSG~IEqdADvV~~l~R~~~y~~~~~~------------------~~~~~e~ivaKnR~G~~G~v~l~f~~~ 460 (476)
T PRK08760 399 RPVMADLRESGAIEQDADMIVFIYRDDYYNKENSP------------------DKGLAEIIIGKHRGGPTGSCKLKFFGE 460 (476)
T ss_pred CCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCCCC------------------CCCEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 98600112544203208689996245323876798------------------888079999746789862699998568
Q ss_pred CCCEEECCCCCCC
Q ss_conf 5402007744667
Q gi|254780332|r 484 FTRFSALSDSSYQ 496 (504)
Q Consensus 484 ~~~f~~~~~~~~~ 496 (504)
++||.|++.+...
T Consensus 461 ~~rF~~~~~d~~~ 473 (476)
T PRK08760 461 YTRFDNLAHDSVG 473 (476)
T ss_pred CCCCCCCCCCCCC
T ss_conf 7770367765255
No 3
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=948.23 Aligned_cols=443 Identities=33% Similarity=0.564 Sum_probs=419.3
Q ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 30102678997899999999983297899999944296663798889999999999983998686438889731798323
Q gi|254780332|r 16 DSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGE 95 (504)
Q Consensus 16 ~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~ 95 (504)
+....|+||||+|||++||||||++|+++.+|.+.|+|+|||.+.||.||++|.+|+.+|+|+|++||.++|.+.+.+++
T Consensus 65 ~~~~~r~PP~niEAEqaVLGaiLld~~~~~~V~~~L~peDFY~~~H~~IF~AI~~L~~~g~piD~vTV~~~L~~~g~Le~ 144 (507)
T PRK05636 65 EYRDFRQPPYDNDAEQGVLGAMLLSPDTVIDIVEVLVPEDFYRPAHQLIFQAIIDLFSDNKEIDPVIVSGRLDRTNDLER 144 (507)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 46777899998999999999998186489999965598768988899999999999977998779999999864698353
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 59489999999622112223677878789999999998765567751234445315666876554444320113446654
Q gi|254780332|r 96 LTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGF 175 (504)
Q Consensus 96 igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~ 175 (504)
+||..||.+|+..+||++|+.+||++||+++.+|++++++.++++.+++.+...+...+++.+++.++++++... ..++
T Consensus 145 iGG~~YL~~L~~~~pS~ani~~YA~iVkeks~~R~LI~~a~~i~~la~~~~~~~di~~~ld~ae~~l~~i~~~~~-~~~~ 223 (507)
T PRK05636 145 VGGAAYLHSLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEVDAVIDRAQQEVFAVSQKNQ-SEDY 223 (507)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCC
T ss_conf 183999999997189788899999999999999999999999999874378777899999999999999860377-8885
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30134336778999998741123664432101377655641677267762131002769999999999851011123333
Q gi|254780332|r 176 HTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDG 255 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~ 255 (504)
..+.+++..+++.++++.++++..+|+||||..||++|+||+||+|+|||||||||||+||+|+|.|+|..
T Consensus 224 ~~~~d~l~~~~~~ie~~~~~~g~~~Gi~TGf~~LD~~t~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~--------- 294 (507)
T PRK05636 224 AVLADILDETMAEIEMLESDGGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTIALDFMRSASIK--------- 294 (507)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH---------
T ss_conf 56999999999999999857999525658808899755088835679997378786689999999999987---------
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
Q ss_conf 32124797589995852179998789999874101100012137688998999999986278078258998899999988
Q gi|254780332|r 256 SYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRA 335 (504)
Q Consensus 256 ~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~ 335 (504)
+|++|+||||||+.+|++.|++|+.++|++++|++|++++++|.++..++.++.++||||+|+|++|+.+|+++|
T Consensus 295 -----~g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~~~lti~~Ira~a 369 (507)
T PRK05636 295 -----NNKASVIFSLEMSKSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKA 369 (507)
T ss_pred -----CCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
T ss_conf -----699379971569989999999998479887888558878899999999999986198899849997699999999
Q ss_pred HHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 64022444746776713532566443211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 336 RRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 336 r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
|++|+++++++|||||||||.++.+ ..+|+++|++|||+||.|||||+||||+||||||++|+|.||||+||||||||+
T Consensus 370 Rrlk~~~~l~livVDYLQLm~~~~~-~~~R~~ev~~ISr~LK~lAkel~vpVi~LsQLnR~~E~R~dkrP~lsDLReSG~ 448 (507)
T PRK05636 370 RRLKQKHDLKMIVVDYLQLMSSGKR-VESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGS 448 (507)
T ss_pred HHHHHHCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 9998617999899845884568888-766899999999999999999799889971268442347999977202126451
Q ss_pred HHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCC
Q ss_conf 233138788972556616442333322211100000011233883899997408997259999974685402007744
Q gi|254780332|r 416 IEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDS 493 (504)
Q Consensus 416 IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~ 493 (504)
||||||+|+|||||+||+++.+ .+|.+||||||||||++|+|.|.|+++++||.||+.+
T Consensus 449 IEQDADvV~~l~R~~~~~~~~~-------------------~~~~~elivaKnRnG~~G~v~l~f~~~~~rF~dla~g 507 (507)
T PRK05636 449 LEQDADMVMLLYRPDSQDKDDE-------------------RAGEADIILAKHRGGPIDTVQVAHQLHYSRFVDMARG 507 (507)
T ss_pred HHHHCCEEEEECCCCCCCCCCC-------------------CCCCEEEEEECCCCCCCEEEEEEEECCCCCHHCCCCC
T ss_conf 1542779999645343588887-------------------7780699997268898516999984586742204798
No 4
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=929.45 Aligned_cols=453 Identities=38% Similarity=0.629 Sum_probs=420.1
Q ss_pred HHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 52785430102678997899999999983297899999944296663798889999999999983998686438889731
Q gi|254780332|r 10 LSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSD 89 (504)
Q Consensus 10 ~~~~~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~ 89 (504)
-++|+.+.+..|+||||+|||++||||||++|+++++|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++
T Consensus 7 ~~~~~~~~~~lr~pP~~~EAEqaVLGaiL~d~d~~~~v~~~L~pedFY~~~H~~IF~ai~~L~~~g~piD~vTv~~~L~~ 86 (464)
T PRK08840 7 RKIPDAQVDAIKVPPHSLEAEQSVLGGLLLDNERWDTVAEKVVAKDFYSRPHRLIFEAVKSILEDGKPLDLITLSEHLER 86 (464)
T ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 57980115543799998899999999998181079999964598757988999999999999977998889999999964
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 79832359489999999622112223677878789999999998765567751234445315666876554444320113
Q gi|254780332|r 90 QDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENG 169 (504)
Q Consensus 90 ~~~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~ 169 (504)
.+.++++||..||.+|+..+||++|+.+|+++|+++|.+|+++.++.++++.+++.... ....+++.++..++.+++..
T Consensus 87 ~~~L~~iGG~~yL~~L~~~~ps~ani~~Ya~iVkeka~~R~li~~a~~i~~~~~d~~~~-~~~~il~~ae~~l~~i~~~~ 165 (464)
T PRK08840 87 REQLEDVGGFAYLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGR-TSEDLLDMAESKVFAIAEER 165 (464)
T ss_pred CCCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf 69824327299999999719978889999999999999999999999999972256688-89999999999999997335
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4-4665430134336778999998741-1236644321013776556416772677621310027699999999998510
Q gi|254780332|r 170 R-YDGGFHTFSDAMTVAIDMAGQAFNR-DGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247 (504)
Q Consensus 170 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~ 247 (504)
. ...++.++.+++..+++.++..++. .+.++|+||||+.||++++||+||+|+|||||||||||+||+|+|.|+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~ie~~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~- 244 (464)
T PRK08840 166 TSENEGPQNVDSILEKTLERIELLYKSPQDGVTGVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD- 244 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-
T ss_conf 6677640019999999999999998577999736888989998753698757679998379873689999999999996-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCEEEECCCCC
Q ss_conf 11123333321247975899958521799987899998741011000121376889989999999862-78078258998
Q gi|254780332|r 248 KAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQK-LPLYIDQTGGI 326 (504)
Q Consensus 248 ~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~-~~l~I~d~~~~ 326 (504)
+|++|+||||||+.+|++.|++|+.++|+..+|++|.+++++|.++..++..+.+ .||||+|+|++
T Consensus 245 -------------~~~~v~~fSlEMs~~ql~~Rlls~~s~i~~~~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd~~~~ 311 (464)
T PRK08840 245 -------------QDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGL 311 (464)
T ss_pred -------------CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf -------------5996799767799899999999985389820111488899999999999999984799588569987
Q ss_pred CHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 8999999886402244-474677671353256644321137889999999999998827919997713822016899998
Q gi|254780332|r 327 SMSQLATRARRLKRQR-GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRP 405 (504)
Q Consensus 327 ti~~I~~~~r~~~~~~-gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP 405 (504)
|+.+|+++||++++++ |+++|||||||||..+++ .+||+++|++|||+||.||||++||||+||||||++|+|.||||
T Consensus 312 t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~-~~~r~~~i~~isr~lK~lAkel~vpVv~lsQLnR~~e~r~dkrP 390 (464)
T PRK08840 312 TPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPAL-QDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRP 390 (464)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 57999999999998648987899618866067886-40367899999999999999969989996316853111699998
Q ss_pred CCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 40101432422331387889725566164423333222111000000112338838999974089972599999746854
Q gi|254780332|r 406 QLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFT 485 (504)
Q Consensus 406 ~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~ 485 (504)
+||||||||+||||||+|+|||||+||+++. ..+|++||||||||||++|+|.+.|+++++
T Consensus 391 ~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~-------------------~~~~~~elivaKnR~G~~G~v~l~f~~~~~ 451 (464)
T PRK08840 391 VNSDLRESGSIEQDADLIMFIYRDEVYNPDS-------------------PLKGTAEIIIGKQRNGPIGSVRLTFQGQYS 451 (464)
T ss_pred CCCCCCCCCCHHHHCCEEEEECCHHHCCCCC-------------------CCCCEEEEEEECCCCCCCEEEEEEEECCCC
T ss_conf 7350125441054386899964431048988-------------------878806999972688986069999856877
Q ss_pred CEEECCCCCCCC
Q ss_conf 020077446677
Q gi|254780332|r 486 RFSALSDSSYQT 497 (504)
Q Consensus 486 ~f~~~~~~~~~~ 497 (504)
||.|++...|++
T Consensus 452 rF~~~~~~~~~~ 463 (464)
T PRK08840 452 RFDNYAGPAFDD 463 (464)
T ss_pred CCCCCCCCCCCC
T ss_conf 530368998788
No 5
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=929.83 Aligned_cols=447 Identities=40% Similarity=0.646 Sum_probs=416.5
Q ss_pred CCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
Q ss_conf 54301026789978999999999832978999999442966637988899999999999839986864388897317983
Q gi|254780332|r 14 KEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDML 93 (504)
Q Consensus 14 ~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l 93 (504)
.|+-...|+||||+|||++|||+||++|+++++|.+.|+|+|||.+.||.||++|++|+.+|+|+|++||.++|++.+.+
T Consensus 6 ~~~~~~~r~pP~~leaE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~vtv~~~L~~~~~l 85 (460)
T PRK07004 6 DPQIESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRLIAATRPADVITVYEALTTSGKA 85 (460)
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
T ss_conf 75743358999989999999999983941799998527987789889999999999999779998898999998425964
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 23594899999996221122236778787899999999987655677512344453156668765544443201134-46
Q gi|254780332|r 94 GELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGR-YD 172 (504)
Q Consensus 94 ~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~-~~ 172 (504)
+++||..||.+|+..+|+++|+.+||++|++++.+|+++.++.++...+++.. +.++..+++++++.++++.+... ..
T Consensus 86 ~~iGg~~yL~~L~~~~~s~ani~~ya~iVke~~~~R~li~~~~~i~~~a~~~~-~~d~~~il~~ae~~l~~i~~~~~~~~ 164 (460)
T PRK07004 86 EEVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQ-GKEVRQLLDEAESKVFSIAEEGARGT 164 (460)
T ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 54288999999997398489999999999889999999999999998732887-77899999999999999986156678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6543013433677899999874--11236644321013776556416772677621310027699999999998510111
Q gi|254780332|r 173 GGFHTFSDAMTVAIDMAGQAFN--RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAE 250 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~ 250 (504)
.++..+.+.+..+++.+++..+ +++.++||||||+.||++|+||+||+|+|||||||||||+||+|+|.|+|..
T Consensus 165 ~~~~~i~~~l~~~~e~ie~~~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~---- 240 (460)
T PRK07004 165 QGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE---- 240 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----
T ss_conf 7603099999999999999996159999853867938898652389877579997368764269999999999872----
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 23333321247975899958521799987899998741011000121376889989999999862780782589988999
Q gi|254780332|r 251 LQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ 330 (504)
Q Consensus 251 ~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~ 330 (504)
+|++|+||||||+.+|++.|++|+.++|+..+|++|+++++||.++..|+.++.++||||+|+|++|+.+
T Consensus 241 ----------~g~~V~~FSLEMs~eql~~Rlls~~s~I~~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~lt~~~ 310 (460)
T PRK07004 241 ----------YGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPME 310 (460)
T ss_pred ----------CCCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf ----------5886699847799999999999860698821100788999999999999999855974896898730789
Q ss_pred HHHHHHHHCCCCC-CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9998864022444-746776713532566443211378899999999999988279199977138220168999984010
Q gi|254780332|r 331 LATRARRLKRQRG-LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSD 409 (504)
Q Consensus 331 I~~~~r~~~~~~g-i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsD 409 (504)
|++++|++++++| +++|||||||||.++.+ +.||.++|++|||+||.||||++||||+||||||++|+|.||||+|||
T Consensus 311 ira~~Rr~~~~~g~l~lvviDYlqli~~~~~-~~~r~~ei~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsD 389 (460)
T PRK07004 311 LRSRARRLARQCGKLGLIIIDYLQLMSGSSQ-GENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSD 389 (460)
T ss_pred HHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 9999999997435888998507754478888-888999999999999999999699789970468431227899875423
Q ss_pred CCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEE
Q ss_conf 14324223313878897255661644233332221110000001123388389999740899725999997468540200
Q gi|254780332|r 410 LRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSA 489 (504)
Q Consensus 410 Lr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~ 489 (504)
|||||+||||||+|+|||||+||+++.. .+|++||||||||||++|+|.|.|+++++||.|
T Consensus 390 LReSGsIEQDADvV~fL~r~~~y~~~~~-------------------~~~~~e~ivaK~R~G~~g~v~l~f~~~~~rF~n 450 (460)
T PRK07004 390 LRESGAIEQDADVILFIYRDEVYNPDSP-------------------DKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDN 450 (460)
T ss_pred HCCCCCHHHCCCEEEEECCCCCCCCCCC-------------------CCCEEEEEEECCCCCCCEEEEEEEECCCCCHHC
T ss_conf 2023320320778999754101589988-------------------888169999736889960699998568773512
Q ss_pred CCCCCC
Q ss_conf 774466
Q gi|254780332|r 490 LSDSSY 495 (504)
Q Consensus 490 ~~~~~~ 495 (504)
++...-
T Consensus 451 ~~~~~~ 456 (460)
T PRK07004 451 FAGAQN 456 (460)
T ss_pred CCCCCC
T ss_conf 567767
No 6
>PRK08082 consensus
Probab=100.00 E-value=0 Score=929.01 Aligned_cols=446 Identities=42% Similarity=0.665 Sum_probs=420.4
Q ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 30102678997899999999983297899999944296663798889999999999983998686438889731798323
Q gi|254780332|r 16 DSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGE 95 (504)
Q Consensus 16 ~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~ 95 (504)
+.-..|+||||+|||++||||||++|+++.+|...|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++.+.+++
T Consensus 3 ~~~~~r~pP~niEAEqaVLGalL~d~~~~~~i~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~iTV~~~L~~~~~l~~ 82 (453)
T PRK08082 3 DLFADRTPPQNIEAEQAVLGAIFLEPDALTTASELLIPDDFYRTSHQKIFEVMLGLSDKGEPVDLVTVTSALADQGLLEE 82 (453)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 52126899998999999999998394279999851498878988999999999999977999889999999852698143
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 59489999999622112223677878789999999998765567751234445315666876554444320113446654
Q gi|254780332|r 96 LTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGF 175 (504)
Q Consensus 96 igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~ 175 (504)
+||..||.+|++.+|+++|+.+|+++|++++.+|+++..+.++.+.+++... +...++++++..++++.+... ...+
T Consensus 83 iGG~~yL~~L~~~~~s~an~~~Ya~iVke~a~~R~li~~~~~i~~~a~~~~~--~~~~ll~~ae~~l~~i~~~~~-~~~~ 159 (453)
T PRK08082 83 VGGVSYLTELAESVPTAANVEYYARIVEEKSLLRRLIRTATHIAQDGYERED--EVDGLLDEAEKKILEVSQRKN-SGAF 159 (453)
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 1789999999970776678999999999999999999999999986305766--789999999999999973357-8885
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30134336778999998741123664432101377655641677267762131002769999999999851011123333
Q gi|254780332|r 176 HTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDG 255 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~ 255 (504)
.++.+.+.++++.++++.++++.++|+||||+.||+++|||+||+|+|||||||||||+|++|+|.|+|..
T Consensus 160 ~~~~d~l~~~~~~ie~~~~~~g~~~Gi~TGf~~LD~lt~G~~~g~LiviaaRPsmGKTa~alnia~~~a~~--------- 230 (453)
T PRK08082 160 QNIKDVLVDTYDNIELLHNRKGDITGIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATK--------- 230 (453)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH---------
T ss_conf 53999999999999999837899775548848888641477758579998678875789999999999985---------
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
Q ss_conf 32124797589995852179998789999874101100012137688998999999986278078258998899999988
Q gi|254780332|r 256 SYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRA 335 (504)
Q Consensus 256 ~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~ 335 (504)
+|++|+||||||+.+|++.|++|+.++|+..+|++|.++++||.++..+..++.++||||+|+|++|+.+|+++|
T Consensus 231 -----~~~~V~~fSlEM~~~~l~~R~la~~s~i~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~idd~~~~~i~~i~~~~ 305 (453)
T PRK08082 231 -----TDENVAIFSLEMGADQLVMRMLCAEGNIDAQRLRTGSLTSDDWGKLTMAMGSLSNAGIYIDDTPGIRVNEIRAKC 305 (453)
T ss_pred -----CCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf -----599489973138989999999971558886677518999999999999999850697389789999899999999
Q ss_pred HHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 64022444746776713532566443211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 336 RRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 336 r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
|++++++|+++|||||||||+++++.++||+++|++|||+||.||||++||||+||||||++|+|.||||+||||||||+
T Consensus 306 r~~~~~~~~~livIDYlqLi~~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLreSG~ 385 (453)
T PRK08082 306 RRLKQEQGLGMILIDYLQLIQGSGRSGENRQQEVSEISRTLKALARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGS 385 (453)
T ss_pred HHHHHHCCCCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 99998669988999507733778988878999999999999999999699799964478431237999977101026552
Q ss_pred HHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCCC
Q ss_conf 23313878897255661644233332221110000001123388389999740899725999997468540200774466
Q gi|254780332|r 416 IEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSSY 495 (504)
Q Consensus 416 IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~~ 495 (504)
||||||+|+|||||+||+++++ .+|++||||||||||++|+|.|.|+++++||.|++..+.
T Consensus 386 IEqdAD~v~~l~R~~~y~~~~~-------------------~~~~~e~ivaK~RnG~~g~v~l~f~~~~~rf~~l~~~~~ 446 (453)
T PRK08082 386 IEQDADIVAFLYRDDYYDRETE-------------------NKNIIEIIIAKQRNGPVGTVELAFVKEYNKFVNLERRFD 446 (453)
T ss_pred HHHHCCEEEEECCHHHCCCCCC-------------------CCCEEEEEEECCCCCCCCEEEEEEECCCCCHHCCCCCCC
T ss_conf 0533668989655654388888-------------------788069999736899861599998568674307110237
Q ss_pred CC
Q ss_conf 77
Q gi|254780332|r 496 QT 497 (504)
Q Consensus 496 ~~ 497 (504)
+.
T Consensus 447 ~~ 448 (453)
T PRK08082 447 DA 448 (453)
T ss_pred CC
T ss_conf 67
No 7
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=925.78 Aligned_cols=441 Identities=38% Similarity=0.625 Sum_probs=416.8
Q ss_pred CHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHC
Q ss_conf 01026789978999999999832978999999442966637988899999999999839986864388897317983235
Q gi|254780332|r 17 SSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGEL 96 (504)
Q Consensus 17 ~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~i 96 (504)
.++.|.||||+|||++||||||.+|+++.+|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++.+.++.+
T Consensus 2 ~~p~r~~P~~~eaE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~IF~ai~~L~~~g~~iD~vtv~~~L~~~~~l~~i 81 (444)
T PRK05595 2 DAPMKSMPQSIEAEQSVLGAMIIDKTSIAQAAEVLNSEDFYRDSHKIIFSAIIELYQKDIAVDMLTLTENLKSTDKLEAV 81 (444)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHC
T ss_conf 98768999989999999999991956899999515988779889999999999999779998899999999756981211
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 94899999996221122236778787899999999987655677512344453156668765544443201134466543
Q gi|254780332|r 97 TVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFH 176 (504)
Q Consensus 97 gg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~ 176 (504)
||..||.+|+..+|+++|+.+|+++|+++|.+|+++.++.++.+.+++... +...+++.+++.++++++.. ...++.
T Consensus 82 Gg~~yL~~L~~~~~s~an~~~ya~iV~e~~~~R~li~~~~~i~~~a~~~~~--~~~~~l~~ae~~l~~i~~~~-~~~~~~ 158 (444)
T PRK05595 82 GGVTYITELSNSVVSTANIQSYIKIVKDKSTLRKLIKSSTEIIENCYNNQD--NVEKVIDSAEKKIFDISEKR-TSSDFE 158 (444)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCC-CCCCCE
T ss_conf 649999999862886799999999999999999999999999987326766--79999999999999987425-667855
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01343367789999987411236644321013776556416772677621310027699999999998510111233333
Q gi|254780332|r 177 TFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS 256 (504)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~ 256 (504)
++.+++..+++.++++.++++..+|+||||+.||+++|||+||+|+|||||||||||+|++|+|.|+|..
T Consensus 159 ~~~d~l~~~~~~ie~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~---------- 228 (444)
T PRK05595 159 PLSNVLERGFEQIENLFNNKGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALR---------- 228 (444)
T ss_pred EHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH----------
T ss_conf 5999999999999999708999677658847699874599857779998579898079999999999986----------
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf 21247975899958521799987899998741011000121376889989999999862780782589988999999886
Q gi|254780332|r 257 YKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR 336 (504)
Q Consensus 257 ~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r 336 (504)
+|++|+||||||+.+|++.|++|+.++|++.+|++|++++++|+++..+..++.++||||+|+|++|+.+|+++||
T Consensus 229 ----~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r 304 (444)
T PRK05595 229 ----EGKSVVIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIYIDDTAGVSVMEMRSKCR 304 (444)
T ss_pred ----CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf ----6993799958899999999999964698844232689799999999999999854897054899964899999999
Q ss_pred HHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 40224447467767135325664432113788999999999999882791999771382201689999840101432422
Q gi|254780332|r 337 RLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSI 416 (504)
Q Consensus 337 ~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~I 416 (504)
++++++|+++|||||||||+++.+ +++|+++|++|||+||.|||||+||||+||||||++|+|.||||+||||||||+|
T Consensus 305 ~~~~~~~~~liiiDYlqLi~~~~~-~~~r~~ev~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsDLReSG~I 383 (444)
T PRK05595 305 RLKIEHGIDLILIDYLQLMSGGKS-SESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSI 383 (444)
T ss_pred HHHHHCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 999873999899823763578988-8889999999999999999996997999702685411279999761010122303
Q ss_pred HHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCC
Q ss_conf 331387889725566164423333222111000000112338838999974089972599999746854020077446
Q gi|254780332|r 417 EQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSS 494 (504)
Q Consensus 417 EqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~ 494 (504)
|||||+|+|||||+||.++.+ .+|.+||||||||||++|+|.|.|+++++||.||+..+
T Consensus 384 EqdAD~v~~l~R~~~y~~~~~-------------------~~~~~elivaKnR~G~~G~v~~~f~~~~~rF~~~~~~~ 442 (444)
T PRK05595 384 EQDADLVMFLYRDEYYNKETE-------------------DKNVAECIIAKQRNGPTGTVKLAWLGQYSKFGNLDVIH 442 (444)
T ss_pred HHHCCEEEEECCHHHCCCCCC-------------------CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 543768989654421488877-------------------78825899980688996159999865868631654211
No 8
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=922.98 Aligned_cols=447 Identities=37% Similarity=0.556 Sum_probs=405.5
Q ss_pred CCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
Q ss_conf 54301026789978999999999832978999999442966637988899999999999839986864388897317983
Q gi|254780332|r 14 KEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDML 93 (504)
Q Consensus 14 ~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l 93 (504)
+|.....|+||||+|||++||||||++|+++++|...|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++.+.+
T Consensus 7 ~~~~~~l~~PP~s~EAE~aVLGaiL~~~~~~~~v~~~L~~edFy~~~H~~IF~ai~~L~~~g~piD~iTv~~~L~~~~~l 86 (472)
T PRK06321 7 KPQPVQLPSPPNSKESEMIVLGCMLTGVNYLNLAANQLQEDDFYFLEHKIIFRVLQDAFKSDKPIDVHLAGEELKRRNQL 86 (472)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
T ss_conf 99811169999989999999999983922799999645987689889999999999999779998899999999746981
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 23594899999996221122236778787899999999987655677512344453156668765544443201134466
Q gi|254780332|r 94 GELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDG 173 (504)
Q Consensus 94 ~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~ 173 (504)
+++||..||.+|++.++|++|+.+||++|+++|.+|+++.++.++.+.+++.+. +....++++++.++++++......
T Consensus 87 ~~iGG~~yL~~L~~~~~s~an~~~Ya~iV~eks~~R~li~~~~~i~~~a~~~~~--d~~~~ld~ae~~l~~i~~~~~~~~ 164 (472)
T PRK06321 87 TVIGGPSYLITLAEFAGTSAYIEEYVEIIRSKSILRKMIQAAKEIEKKALEEPK--DVAVALDEAQNLLFKISQTTNLAQ 164 (472)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 321769999999872887889999999999989999999999999998635898--999999999999999970357665
Q ss_pred CCCCHHH---------------HHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 5430134---------------33677899999874--112366443210137765564167726776213100276999
Q gi|254780332|r 174 GFHTFSD---------------AMTVAIDMAGQAFN--RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLA 236 (504)
Q Consensus 174 ~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTala 236 (504)
. ..+.+ .+.+..+.+++... +.+.++|+||||..||++|+||+||+|+|||||||||||+||
T Consensus 165 ~-~~~~d~~~~~~~~~~~~~~~~l~e~~e~~~~~~~~~~~~~itGipTGf~~LD~lt~Gl~~GdliviaaRPsmGKTala 243 (472)
T PRK06321 165 Y-VLVADKLKGLTSTKDKPFLLQLQERQEAFQQSAQDDSSPMISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALA 243 (472)
T ss_pred C-CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 4-104656502210001578999999999999752125788764225684889998559886757998538999779999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99999998510111233333212479758999585217999878999987410110001213768899899999998627
Q gi|254780332|r 237 TNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKL 316 (504)
Q Consensus 237 lniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~ 316 (504)
+|+|.|+|.. ++++|+||||||+.+|++.|++|+.++|+.++|++|++++++|.++..++.++.++
T Consensus 244 lnia~~~a~~--------------~~~~v~~fSLEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~ 309 (472)
T PRK06321 244 LNIAENFCFQ--------------NRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEH 309 (472)
T ss_pred HHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999985--------------69946997577999999999987403767552104799999999999999998548
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 8078258998899999988640224447467767135325664--43211378899999999999988279199977138
Q gi|254780332|r 317 PLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSK--KIEENRVLEITGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 317 ~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~--~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
||||+|+|++|+.+|+++||++++++|+++|||||||||.+++ +..+||+++|++|||+||.|||||+||||+|||||
T Consensus 310 ~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vvIDYlqL~~~~~~~~~~~~r~~~i~~isr~lK~lAkel~vpvi~LsQLn 389 (472)
T PRK06321 310 TLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGTLRNSESRQTEISEISRMLKNLARELNIPILCLSQLS 389 (472)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 75786799998999999999998738998799972774167777777888999999999999999999799799972268
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf 22016899998401014324223313878897255661644233332221110000001123388389999740899725
Q gi|254780332|r 395 RQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG 474 (504)
Q Consensus 395 R~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g 474 (504)
|++|+|.||||+||||||||+||||||+|+||||++||.++. .+|.+||||||||||+||
T Consensus 390 R~~e~r~~krP~lsDLreSG~IEqdAD~V~~l~R~~~~~~~~--------------------~~~~~e~ivaK~R~G~~g 449 (472)
T PRK06321 390 RKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPND--------------------KPGTAELIVAKNRHGSIG 449 (472)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCC--------------------CCCCEEEEEECCCCCCCC
T ss_conf 431227999976230126441043086899974453249878--------------------898269999726789872
Q ss_pred EEEEEEECCCCCEEECCCCCCCC
Q ss_conf 99999746854020077446677
Q gi|254780332|r 475 TVTLAFQAEFTRFSALSDSSYQT 497 (504)
Q Consensus 475 ~~~~~f~~~~~~f~~~~~~~~~~ 497 (504)
+|.|.|+++++||.|++...|+.
T Consensus 450 ~v~~~f~~~~~rF~n~~~~~~~~ 472 (472)
T PRK06321 450 SVPLVFEKEFARFRNYAAFEFPG 472 (472)
T ss_pred EEEEEEECCCCCCCCCCCCCCCC
T ss_conf 59999856867622576775888
No 9
>PRK07263 consensus
Probab=100.00 E-value=0 Score=923.08 Aligned_cols=447 Identities=37% Similarity=0.623 Sum_probs=418.8
Q ss_pred CCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH
Q ss_conf 43010267899789999999998329789999994429666379888999999999998399868643888973179832
Q gi|254780332|r 15 EDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLG 94 (504)
Q Consensus 15 ~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~ 94 (504)
|+.-..|+||||+|||++||||||++|+++++|.+.|+|+|||.+.|+.||++|++|+.+|+|+|++||.++|++.+.++
T Consensus 2 ~~~~~~r~~P~~leAE~aVLGaiL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~vtv~~~L~~~~~l~ 81 (453)
T PRK07263 2 AEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITLSDRNDAIDATTVRTILDDQDDLQ 81 (453)
T ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH
T ss_conf 65565278999899999999999919207999996469876898899999999999997799988999999996479724
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 35948999999962211222367787878999999999876556775123444531566687655444432011344665
Q gi|254780332|r 95 ELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGG 174 (504)
Q Consensus 95 ~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~ 174 (504)
++||..||.+|++.+|+++|+.+||++|+++|.+|+++..+.++++.+++.+. +...+++.+++.++++.+.. ...+
T Consensus 82 ~iGg~~yL~~L~~~~~s~~n~~~Ya~iV~e~a~~R~li~~~~~~~~~a~~~~~--~~~~il~~ae~~l~~i~~~~-~~~~ 158 (453)
T PRK07263 82 NIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLRDIIARLTESVNQAYEGIL--KSEEIIAGAEKALIDVNEHS-NRSG 158 (453)
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf 33779999999861885544999999999999999999999899986203688--99999999999999998336-7667
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 43013433677899999874112366443210137765564167726776213100276999999999985101112333
Q gi|254780332|r 175 FHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD 254 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~ 254 (504)
+.++.+.+..+++.++.+..+.+.++|+||||+.||++|+||+||+|+|||||||||||+||+|+|.|+|..
T Consensus 159 ~~~~~d~l~~~~~~ie~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~GdLiviaaRPsmGKTa~alnia~~iA~~-------- 230 (453)
T PRK07263 159 FRKISDVLKVNYENLEARSQQTSDVTGLPTGFRDLDKITTGLHPDQLIILAARPAVGKTAFVLNIAQNVGTK-------- 230 (453)
T ss_pred CEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------
T ss_conf 555999999999999998618899776758858799773289978689997278884789999999999985--------
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
Q ss_conf 33212479758999585217999878999987410110001213768899899999998627807825899889999998
Q gi|254780332|r 255 GSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATR 334 (504)
Q Consensus 255 ~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~ 334 (504)
+|++|+||||||+.+|++.|++|+.++|+.++|++|.+++++|.++..+..++.++||||+|+|++|+.+|+++
T Consensus 231 ------~~~~V~~fSlEMs~~ql~~R~la~~~~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~~~i~~i~~~ 304 (453)
T PRK07263 231 ------QKKTVAIFSLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKITEIRAR 304 (453)
T ss_pred ------CCCEEEEEECCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf ------59828999246998999999999861733103313652479999999999874068589978999998999999
Q ss_pred HHHHCCC--CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8640224--44746776713532566443211378899999999999988279199977138220168999984010143
Q gi|254780332|r 335 ARRLKRQ--RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRE 412 (504)
Q Consensus 335 ~r~~~~~--~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~ 412 (504)
||+++++ +|+++|||||||||+++++ .||+++|++|||+||.||||++||||+||||||++|+|.||||+||||||
T Consensus 305 ~r~~~~~~~~~l~livIDYlqLi~~~~~--~~r~~ev~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLre 382 (453)
T PRK07263 305 SRKLSQEVDGGLGLIVIDYLQLITGTKP--ENRQQEVSDISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRE 382 (453)
T ss_pred HHHHHHHHCCCCCEEEEEHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCC
T ss_conf 9999986058986899736764468885--35999999999999999998799799974368431236899977433225
Q ss_pred CCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCC
Q ss_conf 24223313878897255661644233332221110000001123388389999740899725999997468540200774
Q gi|254780332|r 413 SGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSD 492 (504)
Q Consensus 413 Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~ 492 (504)
||+||||||+|+|||||+||+.++++... ...+|.+||||||||||++|+|.+.|+++++||.|++.
T Consensus 383 SG~IEqdAD~v~~l~R~~~y~~~~~~~~~-------------~~~~~~~e~ivaKnR~G~~G~v~~~f~~~~~rF~~l~~ 449 (453)
T PRK07263 383 SGSIEQDADIVAFLYRDDYYRKEGDEAEE-------------AVEDNTIEVILEKNRAGARGTVKLMFQKEYNKFSSIAQ 449 (453)
T ss_pred CCCCHHCCCEEEEECCHHHCCCCCCCCCC-------------CCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 45420027578886445334776553212-------------67787179999767899860699998788787215000
Q ss_pred C
Q ss_conf 4
Q gi|254780332|r 493 S 493 (504)
Q Consensus 493 ~ 493 (504)
.
T Consensus 450 ~ 450 (453)
T PRK07263 450 F 450 (453)
T ss_pred C
T ss_conf 2
No 10
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=921.00 Aligned_cols=453 Identities=35% Similarity=0.573 Sum_probs=408.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 67899789999999998329789999994429666379888999999999998399868643888973179832359489
Q gi|254780332|r 21 RESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQ 100 (504)
Q Consensus 21 ~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~ 100 (504)
....||+|||++||||||++|+++++|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|.+.+.++. .
T Consensus 2 ~~~l~nieAEqaVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~~~piD~vtl~~~L~~~~~l~~----~ 77 (473)
T PRK08506 2 QQNLYDLDIERSVLSSIVFSPEAFEEIAGVLEPKDFYLPAHQDIFEAMIKLHNEDEPIDEEFIRKKLPKDKKIDE----E 77 (473)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH----H
T ss_conf 987668999999999998597389999831798778988999999999999967998889999999874687437----6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999962211222367787878999999999876556775123444531566687655444432011344665430134
Q gi|254780332|r 101 YLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD 180 (504)
Q Consensus 101 yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~~~~~ 180 (504)
|+..+.. +++.+|+.+||++|+++|++|+++.++.++.+.+++.+ .+..++++.+++.++++.+.. ...++.++.+
T Consensus 78 ~l~~~~~-~~s~ani~~Ya~iV~e~s~~R~li~~~~~i~~~a~~~~--~~~~~~l~~ae~~l~~i~~~~-~~~~~~~~~~ 153 (473)
T PRK08506 78 ILLEILA-ANPIINIEAYVEEIKEKSIKRKLLSLANTIPEQAVEED--QASSDILDEVERELYSITNGS-NSEDFKDSKE 153 (473)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 6877632-78688899999999999999999999999999854479--989999999999999998257-8788512999
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 336778999998741-1236644321013776556416772677621310027699999999998510111233333212
Q gi|254780332|r 181 AMTVAIDMAGQAFNR-DGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT 259 (504)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~ 259 (504)
++.++++.++++... ...++|+||||..||++|+||+||+|+|||||||||||+||+|+|.|+|.
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~-------------- 219 (473)
T PRK08506 154 VIKSTMEHIKKQKRLGNKDIIGLDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLNMVLKALN-------------- 219 (473)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--------------
T ss_conf 999999999999855899853477880878887269985627999507998678999999999996--------------
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 47975899958521799987899998741011000121376889989999999862780782589988999999886402
Q gi|254780332|r 260 INGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK 339 (504)
Q Consensus 260 ~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~ 339 (504)
+|++|+||||||+.+|++.|++|+.|+|+.++|++|++++++|.++..|+.++.++||||+|+|++|+.+|+++||++|
T Consensus 220 -~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~lr~g~l~~~e~~~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k 298 (473)
T PRK08506 220 -QGKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWENLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLK 298 (473)
T ss_pred -CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf -5996589822479999999999972887831000689999999999999999865988998899999999999999999
Q ss_pred CCCC-CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2444-746776713532566443211378899999999999988279199977138220168999984010143242233
Q gi|254780332|r 340 RQRG-LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ 418 (504)
Q Consensus 340 ~~~g-i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq 418 (504)
+++| +++|||||||||+++++ ..||++||++|||+||.|||||+||||+||||||++|+|.||||+||||||||+|||
T Consensus 299 ~~~~~l~livIDYLQLm~~~~~-~~~R~~ev~~ISr~LK~lAkEl~vPViaLSQLnR~vE~R~dkrP~lSDLReSGsIEQ 377 (473)
T PRK08506 299 SQHPEIGLAVIDYLQLMSGSKN-FKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQ 377 (473)
T ss_pred HHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9769987899636755468887-530889999999999999999699799970368765557899876001134331354
Q ss_pred HCCEEEEEECHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCCC
Q ss_conf 13878897255661644233332221110---000001123388389999740899725999997468540200774466
Q gi|254780332|r 419 DADVVLFVIRDEYYIRNKEPTNKDDILAY---TKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSSY 495 (504)
Q Consensus 419 dAD~v~~l~R~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~~ 495 (504)
|||+|+|||||+||++++++...+..... ..+.+......+.+|||||||||||||+|.|.|.++++||.|++.+++
T Consensus 378 DADvV~flyR~~yY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~iiaK~RnG~tG~v~l~f~~~~trF~dl~~g~~ 457 (473)
T PRK08506 378 DADIILFVYRDDVYKEREEKEKEDKAKKEGKEERRIHKQNKSIEEAEIIIGKNRNGPTGTVKLIFQKEFTRFVDKPIGSE 457 (473)
T ss_pred HCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 37689996527753665333333321111321112222356777248999657789872599998658777023899987
Q ss_pred CC
Q ss_conf 77
Q gi|254780332|r 496 QT 497 (504)
Q Consensus 496 ~~ 497 (504)
.+
T Consensus 458 ~~ 459 (473)
T PRK08506 458 LE 459 (473)
T ss_pred CC
T ss_conf 30
No 11
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=920.66 Aligned_cols=442 Identities=44% Similarity=0.699 Sum_probs=418.2
Q ss_pred CHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHC
Q ss_conf 01026789978999999999832978999999442966637988899999999999839986864388897317983235
Q gi|254780332|r 17 SSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGEL 96 (504)
Q Consensus 17 ~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~i 96 (504)
.-..|+||||+|||++||||||.+|+++++|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++.+.++.+
T Consensus 4 ~~~~r~pP~n~EAE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~aI~~L~~~g~~iD~vtv~~~L~~~g~l~~i 83 (448)
T PRK05748 4 VAALRVPPHSIEAEQAVLGAIFLDNDALIRVSEFLSPDDFYRHAHRLIFRAMLKLSDRGEPIDVVTVREILDDQGDLEEV 83 (448)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHC
T ss_conf 54467999989999999999985901799998516987789889999999999999769998899999999766973431
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 94899999996221122236778787899999999987655677512344453156668765544443201134466543
Q gi|254780332|r 97 TVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFH 176 (504)
Q Consensus 97 gg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~ 176 (504)
||..||.+|+..+|+++|+.+||++|+++|++|+++..+.++.+.+++... +...+++++++.++++.+.. ...++.
T Consensus 84 Gg~~yL~~L~~~~~s~~n~~~ya~iVke~~~~R~li~~~~~i~~~a~~~~~--~~~~il~~ae~~l~~i~~~~-~~~~~~ 160 (448)
T PRK05748 84 GGLSYLVELANSVPTAANIEYYAKIVREKATLRRLIRTATEIANSAYEPER--DADEILDEAEKKIFEVAEAR-NKSGFK 160 (448)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCC-CCCCCE
T ss_conf 769999999963887556999999999999999999999999997427888--88999999999999998436-877754
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01343367789999987411236644321013776556416772677621310027699999999998510111233333
Q gi|254780332|r 177 TFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS 256 (504)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~ 256 (504)
++.+.+.++++.++++.++++.+.|+||||..||+++|||+||+|+|||||||||||+|++|+|.|+|..
T Consensus 161 ~~~d~l~~~~~~ie~~~~~~~~~~Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~---------- 230 (448)
T PRK05748 161 NIKDVLVKAYDRIEMLFNQTGDITGIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK---------- 230 (448)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----------
T ss_conf 4999999999999999718999761057827899982798867379998479987689999999999985----------
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf 21247975899958521799987899998741011000121376889989999999862780782589988999999886
Q gi|254780332|r 257 YKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR 336 (504)
Q Consensus 257 ~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r 336 (504)
+|++|+||||||+.+|++.|++|+.|+|+..+|++|++++++|.++..+..++.++||||+|+|++|+.+|+++||
T Consensus 231 ----~~~~v~~fSlEM~~~~l~~R~la~~s~v~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r 306 (448)
T PRK05748 231 ----TDKNVAIFSLEMGAESLVMRMLCAEGRIDQQKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPGIKVTEIRARCR 306 (448)
T ss_pred ----CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf ----6980899817788889999999997467777776289999999999999999865983785589886899999999
Q ss_pred HHCCCCC-CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 4022444-746776713532566443211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 337 RLKRQRG-LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 337 ~~~~~~g-i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
++++++| +++|||||||||+.+++..+||+++|++|||+||.||||++||||+||||||++|+|+||||+||||||||+
T Consensus 307 ~~~~~~~~~~~vviDYlqli~~~~~~~~~r~~ev~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLr~SG~ 386 (448)
T PRK05748 307 RLAQEHGGLGLIVIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGS 386 (448)
T ss_pred HHHHHCCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 99997599889997168644777877643999999999999999999699889970268432225899987545224453
Q ss_pred HHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCC
Q ss_conf 2331387889725566164423333222111000000112338838999974089972599999746854020077446
Q gi|254780332|r 416 IEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSS 494 (504)
Q Consensus 416 IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~ 494 (504)
||||||+|+|||||+||+++.+ .+|++||||||||||++|++.|.|+++++||.|++...
T Consensus 387 IEqdAD~v~~l~R~~~y~~~~~-------------------~~~~~e~ivaKnR~G~~g~v~~~f~~~~~rf~~~~~~~ 446 (448)
T PRK05748 387 IEQDADIVAFLYRDDYYDEETE-------------------NKNTIEIIIGKQRNGPVGTVRLAFQKEYNKFVNLARRE 446 (448)
T ss_pred CHHHCCEEEEECCHHHCCCCCC-------------------CCCEEEEEEECCCCCCCCEEEEEEECCCCCHHCCCCCC
T ss_conf 0320768989653432388888-------------------89827999972689986059999867878720400065
No 12
>PRK08694 consensus
Probab=100.00 E-value=0 Score=920.39 Aligned_cols=451 Identities=37% Similarity=0.626 Sum_probs=415.7
Q ss_pred HHHCCCCC--CHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 55278543--0102678997899999999983297899999944296663798889999999999983998686438889
Q gi|254780332|r 9 ILSIPKED--SSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTF 86 (504)
Q Consensus 9 ~~~~~~~~--~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~ 86 (504)
.-.+|-++ .-..|+||||+|||++||||||++|+++++|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++
T Consensus 4 ~~~~~~~~~~~~~l~~pP~nlEAEqaVLGaiLld~~~~~~v~~~L~pedFy~~~H~~IF~ai~~L~~~g~piD~vTv~~~ 83 (468)
T PRK08694 4 YAAMPSEDREVGALSLPPHSMEAEQSVLGGLMLENPAWDRIADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQED 83 (468)
T ss_pred CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 55689986224534899988999999999998093289999964598768988899999999999977998889999999
Q ss_pred HHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 73179832359489999999622112223677878789999999998765567751234445315666876554444320
Q gi|254780332|r 87 LSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLA 166 (504)
Q Consensus 87 L~~~~~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~ 166 (504)
|++.+.++.+||..||.+|+..+||++|+.+||++|++++.+|+++.++.++.+.+++.. +.+...+++.+++.++.+.
T Consensus 84 L~~~~~l~~iGG~~yL~~L~~~~ps~an~~~YA~iVke~s~~R~li~~a~~i~~~a~~~~-~~d~~~il~~ae~~l~~i~ 162 (468)
T PRK08694 84 LQRNEELEAAGGFEYLITLAQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQ-GRDAGQLLDEAENKVFQIA 162 (468)
T ss_pred HHHCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 865598032383999999986188689999999999999999999999999999730456-8999999999999999999
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 113-4466543013433677899999874--1123664432101377655641677267762131002769999999999
Q gi|254780332|r 167 ENG-RYDGGFHTFSDAMTVAIDMAGQAFN--RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
+.. ....++.++.+++.++++.++..++ +++.++|+||||+.||++|+||+||+|+|||||||||||+||+|+|.|+
T Consensus 163 ~~~~~~~~~~~~~~d~l~~~~e~ie~~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTalalnia~~~ 242 (468)
T PRK08694 163 ESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHV 242 (468)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 72476667742099999999999999996059998751557968898764488878479996178653789999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC
Q ss_conf 85101112333332124797589995852179998789999874101100012137688998999999986278078258
Q gi|254780332|r 244 ADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT 323 (504)
Q Consensus 244 A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~ 323 (504)
|.. .+++|+||||||+.+|++.|++|+.++|+.++|++|++++++|.++..+..++.++||||+|+
T Consensus 243 a~~--------------~~~~V~~fSLEMs~~~l~~Rlla~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~pl~idd~ 308 (468)
T PRK08694 243 AVE--------------GKLPVAVFSMEMGGAQLVMRMLGSVGRLDQSVLKTGRLEDEHWGRLNEAVVKLSDAPVYIDET 308 (468)
T ss_pred HHH--------------CCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 984--------------798479977889999999999997259863211048999999999999999986299689769
Q ss_pred CCCCHHHHHHHHHHHCCCCC--CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 99889999998864022444--7467767135325664432113788999999999999882791999771382201689
Q gi|254780332|r 324 GGISMSQLATRARRLKRQRG--LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRD 401 (504)
Q Consensus 324 ~~~ti~~I~~~~r~~~~~~g--i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~ 401 (504)
|++|+.+|++++|++++++| +++|||||||||+.+++ +.||+++|++|||+||.||||++||||+||||||++|+|.
T Consensus 309 ~~~t~~~i~a~~r~~~~~~~~kl~~vvIDYLqLi~~~~~-~~~r~~~i~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~ 387 (468)
T PRK08694 309 PGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGSGR-SDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRT 387 (468)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 999887999999999998389873899736754168887-6559999999999999999997998999632685423379
Q ss_pred CCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEE
Q ss_conf 99984010143242233138788972556616442333322211100000011233883899997408997259999974
Q gi|254780332|r 402 NKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQ 481 (504)
Q Consensus 402 ~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~ 481 (504)
||||+||||||||+||||||+|+|||||+||+++.+ .+|++|+||||||||+||+|.|.|+
T Consensus 388 dkrP~lsDLReSG~IEqDAD~v~~l~R~~~y~~~~~-------------------~~~~~e~ivaK~R~G~~G~v~l~f~ 448 (468)
T PRK08694 388 DKRPMMSDLRESGAIEQDADLIMFMYRDEYYNQDSP-------------------MKGLAECIIGKHRNGPVGKIFLTWT 448 (468)
T ss_pred CCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCC-------------------CCCEEEEEEECCCCCCCCEEEEEEE
T ss_conf 999871301255510533768999634310388988-------------------7880799997057898615999985
Q ss_pred CCCCCEEECCCCC
Q ss_conf 6854020077446
Q gi|254780332|r 482 AEFTRFSALSDSS 494 (504)
Q Consensus 482 ~~~~~f~~~~~~~ 494 (504)
++++||.|++-.+
T Consensus 449 ~~~~rF~~~~~~~ 461 (468)
T PRK08694 449 GQFTKFDNAAYIP 461 (468)
T ss_pred CCCCCCCCCCCCC
T ss_conf 5867450566686
No 13
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=919.09 Aligned_cols=449 Identities=38% Similarity=0.636 Sum_probs=415.7
Q ss_pred CCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
Q ss_conf 54301026789978999999999832978999999442966637988899999999999839986864388897317983
Q gi|254780332|r 14 KEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDML 93 (504)
Q Consensus 14 ~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l 93 (504)
+|+.-..|+||||+|||++||||||++|+++++|.+.|+|+|||.+.|+.||++|++|+.+|+|+|++||.++|++.+.+
T Consensus 18 ~~~~~~~~~pP~s~EAEqaVLGaiLld~d~~~~v~~~L~~edFY~~~H~~IF~ai~~L~~~g~piD~vtv~~~L~~~g~l 97 (471)
T PRK08006 18 DPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQL 97 (471)
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
T ss_conf 80255278999988999999999992864899999636987679988999999999999779987899999999756971
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 23594899999996221122236778787899999999987655677512344453156668765544443201134-46
Q gi|254780332|r 94 GELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGR-YD 172 (504)
Q Consensus 94 ~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~-~~ 172 (504)
+++||..||.+|+..+||++|+.+||++|+++|++|+++.+++++.+.++++.. .....+++.++..++++++... .+
T Consensus 98 ~~iGG~~yL~~L~~~~ps~an~~~Ya~iVkeks~~R~li~~a~~i~~~~~d~~~-~~~~~~ld~ae~~i~~i~~~~~~~~ 176 (471)
T PRK08006 98 DSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQG-RTSEDLLDLAESRVFQIAESRANKD 176 (471)
T ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 422779999999971998889999999999867899999998899986218778-8899999999999999984246666
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 654301343367789999987411-2366443210137765564167726776213100276999999999985101112
Q gi|254780332|r 173 GGFHTFSDAMTVAIDMAGQAFNRD-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAEL 251 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~ 251 (504)
.+..++.+++.++++.++++.+++ +.++||||||..||++|+||+||+|+|||||||||||+||+|+|.|+|..
T Consensus 177 ~g~~~~~~i~~~~~~~ie~~~~~~~~gi~Gi~TGf~~LD~~t~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~----- 251 (471)
T PRK08006 177 EGPKSIDDILDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML----- 251 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-----
T ss_conf 430109999999999999997267899743668838898641688217389999469987699999999999986-----
Q ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCEEEECCCCCCHHH
Q ss_conf 3333321247975899958521799987899998741011000121376889989999999-862780782589988999
Q gi|254780332|r 252 QTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQV-MQKLPLYIDQTGGISMSQ 330 (504)
Q Consensus 252 ~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~-l~~~~l~I~d~~~~ti~~ 330 (504)
+|++|+||||||+.+|++.|++|+.++|+..+|++|+++++||.++..+... +...||||+|+|++|+.+
T Consensus 252 ---------~~~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~l~~~e~~~l~~~~~~~~~~~~l~idd~~~~t~~~ 322 (471)
T PRK08006 252 ---------QDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTE 322 (471)
T ss_pred ---------CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
T ss_conf ---------69957998167999999999999744777554536887999999999999999751885773689998999
Q ss_pred HHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999886402244-4746776713532566443211378899999999999988279199977138220168999984010
Q gi|254780332|r 331 LATRARRLKRQR-GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSD 409 (504)
Q Consensus 331 I~~~~r~~~~~~-gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsD 409 (504)
|+++||++++++ |+++|||||||||+.++. .+||+++|++|||+||.||||++||||+||||||++|+|.||||+|||
T Consensus 323 i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~-~~~r~~ei~~isr~lK~lAkel~ipVi~LsQLnR~~e~R~dkrP~lsD 401 (471)
T PRK08006 323 VRSRARRIFREHGGLSLIMIDYLQLMRVPSL-SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSD 401 (471)
T ss_pred HHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999999998648986899638866167874-410668999999999999999699689970168310016999987340
Q ss_pred CCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEE
Q ss_conf 14324223313878897255661644233332221110000001123388389999740899725999997468540200
Q gi|254780332|r 410 LRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSA 489 (504)
Q Consensus 410 Lr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~ 489 (504)
|||||+||||||+|+|||||+||.++.+ .+|++||||||||||++|+|.+.|+++++||.|
T Consensus 402 LReSG~IEqdAD~V~~l~R~~~y~~~~~-------------------~~~~~elivaKnR~G~~G~v~l~f~~~~~rF~~ 462 (471)
T PRK08006 402 LRESGSIEQDADLIMFIYRDEVYHENSD-------------------LKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDN 462 (471)
T ss_pred CCCCCCHHHHCCEEEEECCCCCCCCCCC-------------------CCCCEEEEEECCCCCCCEEEEEEEECCCCCCCC
T ss_conf 2243401542868999755033578888-------------------788169999736889860699998468775403
Q ss_pred CCCCCCCC
Q ss_conf 77446677
Q gi|254780332|r 490 LSDSSYQT 497 (504)
Q Consensus 490 ~~~~~~~~ 497 (504)
++..++++
T Consensus 463 ~~~~~~~~ 470 (471)
T PRK08006 463 YAGPQYDD 470 (471)
T ss_pred CCCCCCCC
T ss_conf 68998889
No 14
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=0 Score=916.51 Aligned_cols=453 Identities=40% Similarity=0.619 Sum_probs=413.5
Q ss_pred HCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 27854301026789978999999999832978999999442966637988899999999999839986864388897317
Q gi|254780332|r 11 SIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQ 90 (504)
Q Consensus 11 ~~~~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~ 90 (504)
++-+-.....|+||||+|||++||||||++|+++++|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|++.
T Consensus 11 ~~~~~~~~~~~~PP~nlEAEqaVLGalL~d~~~~~~v~~~L~~edFY~~~H~~If~ai~~L~~~g~piD~vTv~~~L~~~ 90 (472)
T PRK06904 11 RIKDKKTAQVLIPPHSIEAEQAVLGGIMLDNRHWDSVAERVIADDFYTFEHRIIFQEMELLFRQNTPIDLLTLDQALKTK 90 (472)
T ss_pred CCCCHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 99961134258899988999999999990831899999645998689888999999999999779998899999999636
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98323594899999996221122236778787899999999987655677512344453156668765544443201134
Q gi|254780332|r 91 DMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGR 170 (504)
Q Consensus 91 ~~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~ 170 (504)
+.++++||..||.+|+..+||++|+.+||++|++++++|+++.++.++++.+++.. ..+..++++.+++.++.+.+...
T Consensus 91 g~l~~iGG~~YL~~L~~~~ps~an~~~Ya~iVkeks~~R~li~~~~~i~~~a~~~~-~~~~~~ild~ae~~l~~i~~~~~ 169 (472)
T PRK06904 91 GKSDEVGGFAYLAELSNNTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPK-GQDIKDILDEAERDVFSIAEKRT 169 (472)
T ss_pred CCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 98032285999999997199788999999999999999999999889999863777-88989999999999999985257
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4-66543013433677899999874--11236644321013776556416772677621310027699999999998510
Q gi|254780332|r 171 Y-DGGFHTFSDAMTVAIDMAGQAFN--RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247 (504)
Q Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~ 247 (504)
. ..+..++.+.+..+++.++.... +.+.++|+||||+.||++|+||+||+|+|||||||||||+||+|+|.|+|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~- 248 (472)
T PRK06904 170 TANEGPQNVINLLENTIDKIENLAATPTNNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA- 248 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-
T ss_conf 6776505499999999999999997428999623228979997441588757579997379875689999999999995-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCC-EEEECCCC
Q ss_conf 11123333321247975899958521799987899998741011000121-37688998999999986278-07825899
Q gi|254780332|r 248 KAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE-LTRPDYEKIVACSQVMQKLP-LYIDQTGG 325 (504)
Q Consensus 248 ~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~-l~~~e~~~i~~a~~~l~~~~-l~I~d~~~ 325 (504)
.+++|+||||||+.+|++.|++|+.++|+.++|++|. +++.+|.++..++..+.+.| |||+|+|+
T Consensus 249 -------------~~~~V~~fSLEM~~~~l~~R~ls~~s~v~~~~i~~g~~l~~~e~~~~~~~~~~l~~~~~l~idd~~~ 315 (472)
T PRK06904 249 -------------SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSG 315 (472)
T ss_pred -------------CCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf -------------5995799778799999999999986499988864688560999999999999984689816846999
Q ss_pred CCHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf 88999999886402244-47467767135325664432113788999999999999882791999771382201689999
Q gi|254780332|r 326 ISMSQLATRARRLKRQR-GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKR 404 (504)
Q Consensus 326 ~ti~~I~~~~r~~~~~~-gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~kr 404 (504)
+|+.+|+++||++++++ |+++|||||||||.+++. ..+|+++|++|||+||.|||||+||||+||||||++|+|.|||
T Consensus 316 ~t~~~i~~~~r~~~~~~~~l~~vvIDYLqL~~~~~~-~~~r~~ei~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~dkr 394 (472)
T PRK06904 316 LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF-EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKR 394 (472)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 999999999999998738997899638866048887-7778899999999999999997998899732684311279998
Q ss_pred CCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 84010143242233138788972556616442333322211100000011233883899997408997259999974685
Q gi|254780332|r 405 PQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEF 484 (504)
Q Consensus 405 P~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~ 484 (504)
|+||||||||+||||||+|+|||||+||.++.+ ..+|++||||||||||++|++.+.|++++
T Consensus 395 P~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~------------------~~~~~~elivaKnR~G~~G~v~~~f~~~~ 456 (472)
T PRK06904 395 PVNSDLRESGSIEQDADLIMFIYRDEVYNETTE------------------DNKGVAEIIIGKQRNGPIGRVRLAFQGQY 456 (472)
T ss_pred CCCCCCCCCCCHHHHCCEEEEECCHHCCCCCCC------------------CCCCCEEEEEECCCCCCCCEEEEEEECCC
T ss_conf 860202252301542868999644200488876------------------77883799997477898616999985787
Q ss_pred CCEEECCCCCCCC
Q ss_conf 4020077446677
Q gi|254780332|r 485 TRFSALSDSSYQT 497 (504)
Q Consensus 485 ~~f~~~~~~~~~~ 497 (504)
+||.|+++.+-..
T Consensus 457 ~rF~~~~~~~~~~ 469 (472)
T PRK06904 457 SRFDNLANIPQYY 469 (472)
T ss_pred CCCCCCCCCCCCC
T ss_conf 7430457898777
No 15
>PRK07773 replicative DNA helicase; Validated
Probab=100.00 E-value=0 Score=898.78 Aligned_cols=382 Identities=33% Similarity=0.547 Sum_probs=368.2
Q ss_pred CHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHC
Q ss_conf 01026789978999999999832978999999442966637988899999999999839986864388897317983235
Q gi|254780332|r 17 SSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGEL 96 (504)
Q Consensus 17 ~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~i 96 (504)
.+..|.||||+||||+|||+||++++++++|.+.|+|+|||.+.|+.||++|.+|+.+|+|+|++||.++|.+++.++++
T Consensus 2 ~~~~r~PP~niEAEqaVLGaiLld~~ai~~v~~~L~~edFY~~~Hq~If~Ai~~L~~~g~piD~vTV~~~L~~~g~L~~v 81 (868)
T PRK07773 2 EDYGRQPPQDIAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNIYDAILDLYGRGEPADLVTVAAELDRRGLLTRI 81 (868)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHC
T ss_conf 86778999868999999999980873799999645987679767999999999999779977760299998546984544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 94899999996221122236778787899999999987655677512344453156668765544443201134466543
Q gi|254780332|r 97 TVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFH 176 (504)
Q Consensus 97 gg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~ 176 (504)
||..||.+|++.+||++|+++||++|+|+|++|+|+.++.+|++.+++.+.+.+..++++++|+.|+++++. ....++.
T Consensus 82 GG~~YL~~L~~~vpSaan~~~YA~IV~ekai~R~LI~~a~eI~~~ay~~~~~~dv~e~ld~AE~~If~Ise~-~~~~~~~ 160 (868)
T PRK07773 82 GGAPYLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRIVQYGYAGAEGADVAEVVDRAQAEIYDVTQR-RPQEDFV 160 (868)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCC
T ss_conf 889999999871997999999999999999999999999999998741776689999999999999999725-7767763
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01343367789999987411236644321013776556416772677621310027699999999998510111233333
Q gi|254780332|r 177 TFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS 256 (504)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~ 256 (504)
++++++.++++.++++.++++.++||||||.+||++++||+||+|+|||||||||||+|++|||.|+|..
T Consensus 161 ~i~~~l~~a~~~ie~~~~~~~~l~GvpTG~~~ld~~~~g~~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~---------- 230 (868)
T PRK07773 161 ALEDLLQPTMDEIDAIASSGGLAPGVPTGFYDLDEMTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSIR---------- 230 (868)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----------
T ss_conf 3899999999999999846999878688979998763188877679998289777778999999999986----------
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf 21247975899958521799987899998741011000121376889989999999862780782589988999999886
Q gi|254780332|r 257 YKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR 336 (504)
Q Consensus 257 ~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r 336 (504)
++.+|+||||||+++|++.|++|+.++|+..+|++|+|+++||.++..+.+.++++||||+|+|++|+.+|+++||
T Consensus 231 ----~~~~v~~FSLEMs~~ql~~Rlls~~~~i~~~~lr~G~l~~~~~~~~~~a~~~l~~~pl~IdDtp~isi~eirakaR 306 (868)
T PRK07773 231 ----HRLASVIFSLEMSKEEIVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMMEIRSKAR 306 (868)
T ss_pred ----CCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
T ss_conf ----5996589730567889999999876078776641688898999999999999861988884799999999999999
Q ss_pred HHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 402244474677671353256644321137889999999999998827919997713822016899998401014324
Q gi|254780332|r 337 RLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG 414 (504)
Q Consensus 337 ~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg 414 (504)
++|+++++++|||||||||+++.+ .+||.+||++|||.||.|||||+||||+||||||++|+|.||||+||||||||
T Consensus 307 rlk~~~~l~lIvvDYLQLm~~~~~-~~~R~qevs~isr~LK~lAkeL~vPVialsQl~R~vE~R~~krP~lsdLresg 383 (868)
T PRK07773 307 RLQQKANLKLIVVDYLQLMTSGKK-YESRQQEVSEFSRHLKLLAKELEVPVIALSQLNRGPEQRTDKRPMLSDLRESG 383 (868)
T ss_pred HHHHCCCCCEEEEECHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 986526998899961552478988-76298999999899999998758978987103655422467773010033327
No 16
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=879.63 Aligned_cols=434 Identities=44% Similarity=0.717 Sum_probs=417.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHH
Q ss_conf 67899789999999998329789999994429666379888999999999998399868643888973179832359489
Q gi|254780332|r 21 RESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQ 100 (504)
Q Consensus 21 ~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~ 100 (504)
++||||+|||++|||+||++|+.+..|.+.|.|+|||.+.||.||++|.+|+++++|+|++||.++|++++.++++||..
T Consensus 1 ~~~p~~~eAE~~vLG~il~~~~~~~~i~~~l~~~dFy~~~H~~IF~a~~~l~~~~~~id~vtv~~~l~~~~~~~~igg~~ 80 (435)
T COG0305 1 RLPPQDIEAEQAVLGGILLDPDAIERVSERLRPEDFYRPAHRLIYQAILDLYGQGEPIDLVTVSEELSDRGLLTRIGGAN 80 (435)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCHH
T ss_conf 98997779999986654048888999997268532076789999999999986689876728999986414476607589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999962211222367787878999999999876556775123444531566687655444432011344665430134
Q gi|254780332|r 101 YLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD 180 (504)
Q Consensus 101 yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~~~~~ 180 (504)
||.+|...+|+.+|+.+|+++|++++++|+|+..+.++.+.+++...+.. ..++++++..++++++. +...++.++++
T Consensus 81 yl~~L~~~~ps~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~-~~~l~~ae~~i~~i~~~-~~~~~~~~~~~ 158 (435)
T COG0305 81 YLATLIDRTPSAANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLD-EEVLDAAEKKIFDVAER-KNSEDFVHIGD 158 (435)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHH-HCCCCHHHHHH
T ss_conf 99999862887645999999999999999999999999996534544438-99999999999999975-21332244889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33677899999874112366443210137765564167726776213100276999999999985101112333332124
Q gi|254780332|r 181 AMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI 260 (504)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~ 260 (504)
++.++++.++++.++.+ ++||||||..||++|+||+||+|+|+|||||||||+||+|+|.|+|..
T Consensus 159 ~l~~~~~~i~~~~~~~~-~~Gi~tgf~~LD~~t~G~~~~dLiilAaRP~mGKTafalnia~n~a~~-------------- 223 (435)
T COG0305 159 LLKETMDEIEARFENGG-LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAAD-------------- 223 (435)
T ss_pred HHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH--------------
T ss_conf 99999999998735578-851446834567773377467779971689997589999999999985--------------
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79758999585217999878999987410110001213768899899999998627807825899889999998864022
Q gi|254780332|r 261 NGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKR 340 (504)
Q Consensus 261 ~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~ 340 (504)
++++|++|||||+++|++.|++|+.|+|+..++++|.+++++|+++..|+..+++.||||+|+|++|+.+|++++||+++
T Consensus 224 ~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~ 303 (435)
T COG0305 224 GRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKL 303 (435)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 58975999826799999997534011545100212542689999999999987617854337888878889999998887
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 44474677671353256644321137889999999999998827919997713822016899998401014324223313
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
++|+++|+|||||||.++.+. +||++||++|||+||.||||++||||+||||||.+|+|.||||+||||||||+|||||
T Consensus 304 ~~~l~liviDYLQLm~~~~~~-~~R~qevseISr~LK~LAkEL~vPvIAlSQLsR~~E~R~dkrP~lSDLRESGsIEQDA 382 (435)
T COG0305 304 KHNLGLIVIDYLQLMTGGKKS-ENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDA 382 (435)
T ss_pred HCCCCEEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf 459738998865411367764-1268899999999999998748808864452441121145687555675578436657
Q ss_pred CEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECC
Q ss_conf 87889725566164423333222111000000112338838999974089972599999746854020077
Q gi|254780332|r 421 DVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALS 491 (504)
Q Consensus 421 D~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~ 491 (504)
|+|+|+||++||.++.++ +|++|+||+||||||+|+|.+.|++++++|.+++
T Consensus 383 DiVmflyRde~y~~~~~~-------------------~g~aeiIi~K~RnGp~GtV~l~f~~~~~~F~~~~ 434 (435)
T COG0305 383 DIVIFLHRDEAYLKDTPD-------------------RGEAEVIVAKNRNGPTGTVKLAFDPQFTKFKNLA 434 (435)
T ss_pred CEEEEEECHHHCCCCCCC-------------------CCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 789998142322677788-------------------8628999874368987459999834654301067
No 17
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=0 Score=870.16 Aligned_cols=419 Identities=41% Similarity=0.674 Sum_probs=393.2
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 78999999999832978999999442966637988899999999999839986864388897317983235948999999
Q gi|254780332|r 26 NIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQYLARL 105 (504)
Q Consensus 26 n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~yL~~L 105 (504)
|+|||++||||||.+|+++++|.++|+|+|||++.|+.||++|.+|+.+|+|+|++||.++|++.+.++.+||..||.+|
T Consensus 1 sieaE~~vLgalL~~~~~~~~v~~~L~~e~F~~~~h~~If~ai~~l~~~~~~iD~vtl~~~l~~~~~~~~~gg~~yl~~L 80 (421)
T TIGR03600 1 SIEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLDMFAENRPVDPLTLADKLEAEGEAEKVGGLAYLAEI 80 (421)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCHHHHHHH
T ss_conf 90899999999981987899998444998679967999999999999759999999999998625745541759999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHH
Q ss_conf 96221122236778787899999999987655677512344453156668765544443201134-46654301343367
Q gi|254780332|r 106 ASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGR-YDGGFHTFSDAMTV 184 (504)
Q Consensus 106 ~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~-~~~~~~~~~~~~~~ 184 (504)
++.+++++|+.+|+++|+++|.+|+++.++.++.+.+++.. +.+..+.++.+++.+..+..... ....+.++.+.+.+
T Consensus 81 ~~~~~s~~n~~~ya~~v~e~~~~R~li~~~~~i~~~~~~~~-~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~ 159 (421)
T TIGR03600 81 SNNTPSAANISSYARIVREKAKERKLIAACQRIIDLACSDG-GQTAEQKVEEAQAALLALTGMSDGQERGFVTFGEVLED 159 (421)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHH
T ss_conf 85489656699999999999999999999999999873668-99999999999999999871345676774569999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 78999998741123664432101377655641677267762131002769999999999851011123333321247975
Q gi|254780332|r 185 AIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGI 264 (504)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~ 264 (504)
+++.++++.++.+..+||||||+.||++||||+||+|+|||||||||||+||+|+|.|+|.. +|++
T Consensus 160 ~~~~ie~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~--------------~g~~ 225 (421)
T TIGR03600 160 VVRDLDKRFNPKGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--------------EGKP 225 (421)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH--------------CCCE
T ss_conf 99999999736898677878807899983699988689998546787459999999999986--------------6983
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCC-C
Q ss_conf 899958521799987899998741011000121376889989999999862780782589988999999886402244-4
Q gi|254780332|r 265 VGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQR-G 343 (504)
Q Consensus 265 Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~-g 343 (504)
|+||||||+.+|++.|++|+.++|+.++|++|++++++|+++..+..++.++||||+|+|++|+.+|++++|++++++ |
T Consensus 226 Vl~fSLEMs~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~ 305 (421)
T TIGR03600 226 VLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGG 305 (421)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 89992579999999999998548977666528999899999999999861687899669988767899999999986289
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
+++|||||||||+++. +.||+++|++|||+||.||||++||||+||||||++|+|.||||.||||||||+||||||+|
T Consensus 306 l~livIDYLqLi~~~~--~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV 383 (421)
T TIGR03600 306 LDLIVVDYIQLMAPTR--GRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVI 383 (421)
T ss_pred CCEEEECHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEE
T ss_conf 8699975786537888--88889999999999999999979978997057865233688886543444335742047489
Q ss_pred EEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 897255661644233332221110000001123388389999740899725999997
Q gi|254780332|r 424 LFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 424 ~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
+|||||+||+.+.+ .+|++||||||||||++|+|+|.|
T Consensus 384 ~fl~R~~~y~~~~~-------------------~~~~~e~ivaKnRnG~~G~v~l~f 421 (421)
T TIGR03600 384 GLIHREGYYDAREP-------------------PAGVAELILAKNRHGPTGTVELLF 421 (421)
T ss_pred EEECCCCCCCCCCC-------------------CCCEEEEEEEECCCCCCCEEEEEC
T ss_conf 99613333478888-------------------888389999814789984387539
No 18
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=863.62 Aligned_cols=423 Identities=34% Similarity=0.525 Sum_probs=382.3
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 89978999999999832978999999442966637988899999999999839986864388897317983235948999
Q gi|254780332|r 23 SPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQYL 102 (504)
Q Consensus 23 ~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~yL 102 (504)
-.||+|||++||||||++|++++++ .|+|+|||.|.||.||++|.+|+.+|+|+|++||.++|.+ +.++++||..||
T Consensus 2 ~~hniEAEqaVLGalLld~~~i~~v--~L~~e~Fy~~~H~~If~ai~~L~~~g~piD~vTv~~~L~~-~~L~~iGG~~yL 78 (428)
T PRK06749 2 SIQNVEAEKTVLGSLLLDGELIKEC--RLTEQYFSMPVHKSIFQLMRKMEDEGQPIDLVTFISRVDP-NFLKGIGGMEYF 78 (428)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEE--EECHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCHHHCCCHHHH
T ss_conf 8547999999999998280400015--4087887978899999999999977999889999998754-335443879999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99996221122236778787899999999987655677512344453156668765544443201134466543013433
Q gi|254780332|r 103 ARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSDAM 182 (504)
Q Consensus 103 ~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~~~~~~~~~~~~~ 182 (504)
.+|++.+|+++|+.+|+++|+++|.+|+++..+.++.+.+... .....+..++..+.++.+.... ...++.+.+
T Consensus 79 ~~L~~~~ps~an~~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~----~~~~~i~~~~~~l~~~~~~~~~--~~~~~~~~l 152 (428)
T PRK06749 79 IGLMDGVPTTSNFSYYEGLVRGAWKMYQAGVLGHKMGERLIAE----KDEKIIGETITALCELEEKDCV--CEFDLKDAL 152 (428)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHH
T ss_conf 9999718877889999999999999999999999999876346----1578999999999998624876--754289999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 67789999987411236644321013776556416772677621310027699999999998510111233333212479
Q gi|254780332|r 183 TVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING 262 (504)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g 262 (504)
.+.+ ++...+.+..+|+||||+.||++|+||+||+|+|||||||||||+||+|+|.|+|+ +|
T Consensus 153 ~~~~---e~~~~~~~~~~Gi~TGf~~LD~lt~Gl~~g~LiviaaRPsmGKTa~alnia~~~a~---------------~g 214 (428)
T PRK06749 153 VDLY---EELHQDVKEITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAK---------------SG 214 (428)
T ss_pred HHHH---HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CC
T ss_conf 9999---99984649987687783889875249998868999627989768999999999996---------------49
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 75899958521799987899998741011000121--3768899899999998627807825899889999998864022
Q gi|254780332|r 263 GIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE--LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKR 340 (504)
Q Consensus 263 ~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~--l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~ 340 (504)
++|+||||||+.+|++.|++|+.++|+..+|++|+ +++++|+++.+++.++.++||||+|+|++|+.+|+++||++++
T Consensus 215 ~~v~~fSlEMs~~~l~~R~ls~~s~v~~~~i~~~~~~~~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~ 294 (428)
T PRK06749 215 AAVGLFSLEMSSKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKR 294 (428)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 92799837899999999999975499888862776779999999999999998559659975899767999999999999
Q ss_pred CCCCC--EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 44474--6776713532566443211378899999999999988279199977138220168999984010143242233
Q gi|254780332|r 341 QRGLD--LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ 418 (504)
Q Consensus 341 ~~gi~--~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq 418 (504)
+||++ +|||||||||.++.+...||+++|++|||+||.||||++||||+||||||++|+|.||||+||||||||+|||
T Consensus 295 ~~g~~~~livIDYlqLi~~~~~~~~~r~~ev~~isr~lK~lAkel~vpvi~lsQLnR~~e~r~dkrP~lsDLreSG~IEq 374 (428)
T PRK06749 295 KHGDKKVLIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQ 374 (428)
T ss_pred HCCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCHHHH
T ss_conf 74998769997677650578777778999999999999999999699899971378552337899976012103330244
Q ss_pred HCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECC
Q ss_conf 1387889725566164423333222111000000112338838999974089972599999746854020077
Q gi|254780332|r 419 DADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALS 491 (504)
Q Consensus 419 dAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~ 491 (504)
|||+|+|||||+||+++.+ .++++||||||||||++|+|.|.|+++++||.|+.
T Consensus 375 dAD~v~~l~R~~~y~~~~~-------------------~~~~~eiivaKnR~G~~G~v~~~f~~~~~~F~~~e 428 (428)
T PRK06749 375 DADVIMLMYREDYYDKETM-------------------QKEMTEIHVAKHRNGPVGSFKLRFLKEFGRFVEGE 428 (428)
T ss_pred HCCEEEEECCHHHCCCCCC-------------------CCCCEEEEEECCCCCCCCEEEEEEECCCCEEECCC
T ss_conf 2778999724310487767-------------------88825999972589997069999976867131789
No 19
>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692 This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity. Helicase DnaB is a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of more than 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. Replication protein, GP12 from Bacteriophage P22 also belongs to this family .; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=623.46 Aligned_cols=446 Identities=43% Similarity=0.655 Sum_probs=415.6
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHCCC-
Q ss_conf 02678997899999999983297899999944296663798889999999999983998------68643888973179-
Q gi|254780332|r 19 QYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKT------ANPVTVKTFLSDQD- 91 (504)
Q Consensus 19 ~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~------iD~itl~~~L~~~~- 91 (504)
..+.||++.++|++|||+++++++.++.+...+.|+|||.+.|+.||+++..++.++.| +|.+++..++.+++
T Consensus 2 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dfy~~~~~~~~~~~~~l~~~~~p~~g~~l~d~~~~~~~~~~~~~ 81 (465)
T TIGR00665 2 NLALPPQNIEAERAVLGGIFLDNEGIDLIAEKLEPDDFYTFPHRLIFEAMLSLYEEGEPLFGSGLIDLVTVKEELPDHGK 81 (465)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 64443113467899898775131345667776532333010268999999996204786311012445665555303564
Q ss_pred -----CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----832359489999999622112223677878789999999998765567751234445315666876554444320
Q gi|254780332|r 92 -----MLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLA 166 (504)
Q Consensus 92 -----~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~ 166 (504)
..+.++|..|+..|...+|+..++..|+++|++.+++|+++..+.++.+..++... ......++.++..++.+.
T Consensus 82 ~~~~~~~~~~~g~~~l~~l~~~~p~~~~i~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (465)
T TIGR00665 82 TQLLITLDEIGGLFYLVLLSNLTPTAANIEAYADIVKEKSILRRLISVAKEIAEEGYESKG-DEIEDILDEAERKIFKIA 160 (465)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 0003322233116788887514752457899999997689999999866678762023233-046788988888999987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 113446654301343367789999987411--236644321013776556416772677621310027699999999998
Q gi|254780332|r 167 ENGRYDGGFHTFSDAMTVAIDMAGQAFNRD--GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA 244 (504)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A 244 (504)
.......++.++.+++....+.+.+...+. ..++|+||||..||.+++||++|+|+|+||||++|||+|++|++.++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gf~~ld~~~~G~~~~~l~~~~arP~~Gkt~~~~n~~~~~~ 240 (465)
T TIGR00665 161 ESRTSSEGLQNIKEVLESTEDLIDKLYRKENHLGVTGIPTGFYDLDKLTGGFQPGDLIIVAARPSMGKTAFALNIAANAA 240 (465)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 52000124420889999999888887402332225666532013445432677565588833787525889999998776
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCEEEECC
Q ss_conf 51011123333321247975899958521799987899998741011000121376889989999999862-78078258
Q gi|254780332|r 245 DAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQK-LPLYIDQT 323 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~-~~l~I~d~ 323 (504)
... ....+..+|++|||||+.++++.|+++..+.|+..++++|.+++.+|+.+..+...+.+ .++||+|+
T Consensus 241 ~~~---------~~~~~~~~~~~fsle~~~~~~~~r~~~~~~~~~~~~~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~d~ 311 (465)
T TIGR00665 241 NRE---------KFDKEDKPVLFFSLEMSAEQLALRLLASESRIDSTKLRTGRLDDEEWEKLTKAMGELSDKLPLYIDDT 311 (465)
T ss_pred HHH---------HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 432---------02423350378851467799999998765310134432003237788889999887530156224205
Q ss_pred CCCCHHHHHHHHHHHCCCC-C-CCEEEECCHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 9988999999886402244-4-746776713532566443-211378899999999999988279199977138220168
Q gi|254780332|r 324 GGISMSQLATRARRLKRQR-G-LDLLIVDYIQLMTTSKKI-EENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR 400 (504)
Q Consensus 324 ~~~ti~~I~~~~r~~~~~~-g-i~~vvIDYLqli~~~~~~-~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r 400 (504)
+++++.++++++|++++++ | +++++|||||||...... +.+|+++++.|++.||.+|+|+++|||+++||||.+|+|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~gp~~~~~~dyl~l~~~~~~~~~~~r~~~~~~i~~~lk~~a~e~~~P~~al~~l~r~~e~r 391 (465)
T TIGR00665 312 SGITLTEIRSQARRLKRESGGPLGLILIDYLQLISGSKNSYGDNRHQEVAEISRSLKALARELNVPVIALSQLSRSLEER 391 (465)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 77529999999999886417850101234577741000235640468899998999988877414166566653223201
Q ss_pred CCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 99998401014324223313878897255661644233332221110000001123388389999740899725999997
Q gi|254780332|r 401 DNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 401 ~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
.||||.+||||+||+||||||+|+|+||+++|..+.+....+. .--.+|++++||||||+|++.+.|
T Consensus 392 ~d~rP~~~dlresG~~e~dad~~~~~~r~~~~~~~~~~~~~~~-------------~~~~~e~~~~k~rnGp~G~~~~~f 458 (465)
T TIGR00665 392 KDKRPILSDLRESGSIEQDADLVLFLYRDEDYDKESEDKGGPK-------------NLFEAELIIAKNRNGPTGTVKLLF 458 (465)
T ss_pred CCCCCCHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCC-------------HHEEEEEEEEECCCCCCCEEEEEE
T ss_conf 3456312333321675322101211000100365431124552-------------000000000003678741488754
Q ss_pred ECCCCCE
Q ss_conf 4685402
Q gi|254780332|r 481 QAEFTRF 487 (504)
Q Consensus 481 ~~~~~~f 487 (504)
.+++++|
T Consensus 459 ~~~~~~f 465 (465)
T TIGR00665 459 NPEFTRF 465 (465)
T ss_pred CCCCCCC
T ss_conf 4752369
No 20
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=0 Score=490.77 Aligned_cols=242 Identities=55% Similarity=0.875 Sum_probs=228.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
++||+++|||+||+|+||||+||+|||+|++|+|.|+|.. +|.+|+||||||+.++++.|++|+.+
T Consensus 1 ~eLD~~~gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~--------------~g~~V~~~SlEm~~~~~~~R~~s~~~ 66 (242)
T cd00984 1 TDLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKK--------------QGKPVLFFSLEMSKEQLLQRLLASES 66 (242)
T ss_pred CCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9523431699998189999689999999999999999997--------------79959999333538899999999982
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHH
Q ss_conf 41011000121376889989999999862780782589988999999886402244474677671353256644321137
Q gi|254780332|r 287 EVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRV 366 (504)
Q Consensus 287 ~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~ 366 (504)
+||+.+++.+.++.++|.++.++...+.+.||||+|.++.|+++|+++||++++++++++|||||||||.++.. ..+++
T Consensus 67 ~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~~~-~~~~~ 145 (242)
T cd00984 67 GISLSKLRTGSLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKK-KGNRQ 145 (242)
T ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC-CCCHH
T ss_conf 97745530265227999999999998616988996699999999999999998836998999826985467776-65799
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCC
Q ss_conf 88999999999999882791999771382201689999840101432422331387889725566164423333222111
Q gi|254780332|r 367 LEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILA 446 (504)
Q Consensus 367 ~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~ 446 (504)
+++++|++.||.||+|++||||++|||||+.++|.+++|.++|||+||+|||+||+|++||||++|.++.+
T Consensus 146 ~~i~~i~~~Lk~lA~e~~v~Vi~~sQlnR~~~~~~~~~p~l~dl~~S~~ieq~AD~vl~l~R~~~~~~~~~--------- 216 (242)
T cd00984 146 QEVAEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESE--------- 216 (242)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC---------
T ss_conf 99999999999999997993999846786612278988660122332000201749999851434576577---------
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 000000112338838999974089972599999746
Q gi|254780332|r 447 YTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQA 482 (504)
Q Consensus 447 ~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~ 482 (504)
.+|.++|+|+|||+|++|+|+|.|++
T Consensus 217 ----------~~~~~~l~v~KnR~G~~G~v~l~fdg 242 (242)
T cd00984 217 ----------SKGIAEIIVAKNRNGPTGTVELRFDG 242 (242)
T ss_pred ----------CCCEEEEEEEECCCCCCCEEEEEECC
T ss_conf ----------89848999981689998549999579
No 21
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=100.00 E-value=0 Score=462.42 Aligned_cols=258 Identities=24% Similarity=0.317 Sum_probs=224.6
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 11236644321013776556416772677621310027699999999998510111233333212479758999585217
Q gi|254780332|r 195 RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 195 ~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
++-...|+-+||+.||++|+||+||+|+|||||||+|||+|++++|.|++.+ +|.+|+|||+||+.
T Consensus 6 ~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~--------------~g~~vl~~SlEm~~ 71 (271)
T cd01122 6 EALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------------HGVRVGTISLEEPV 71 (271)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCEEEEEECCCCH
T ss_conf 7887556658816688873799998089999689986999999999999997--------------69908999704999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-EEEECC-CCCCHHHHHHHHHHHCCCCCCCEEEECCH
Q ss_conf 9998789999874101100012137688998999999986278-078258-99889999998864022444746776713
Q gi|254780332|r 275 EQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLP-LYIDQT-GGISMSQLATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 275 ~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~-l~I~d~-~~~ti~~I~~~~r~~~~~~gi~~vvIDYL 352 (504)
++++.|++|+.++++......+... ..+++..+..++.+.+ +||.|. +..++++|++.+|++++++|+++||||||
T Consensus 72 ~~~~~Rlls~~~g~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDyl 149 (271)
T cd01122 72 VRTARRLLGQYAGKRLHLPDTVFIY--TLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNL 149 (271)
T ss_pred HHHHHHHHHHHHCCCHHHCCCCCCC--HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 9999999999829971103446778--09999999999707998088789999889999999999998289988998317
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 5325664432113788999999999999882791999771382201689---9998401014324223313878897255
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRD---NKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~---~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
|+|........++++++++|+++||.||+|++||||++|||||..+.|. .++|.+|||||||+|||+||+||||||+
T Consensus 150 qll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~ 229 (271)
T cd01122 150 SIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERN 229 (271)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEEC
T ss_conf 85036786773189999999999999999979977999526765355565668775666612430125328799999755
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEE-EEEEECCCCCEEE
Q ss_conf 6616442333322211100000011233883899997408-9972599-9997468540200
Q gi|254780332|r 430 EYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQR-HGPTGTV-TLAFQAEFTRFSA 489 (504)
Q Consensus 430 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR-~G~~g~~-~~~f~~~~~~f~~ 489 (504)
.+|..+ .+|.++|+|+||| +|.+|++ +|.|+.+|+||++
T Consensus 230 ~~~~~~---------------------~~~~~~l~v~KnR~~G~tG~~~~l~y~~~tgr~s~ 270 (271)
T cd01122 230 QQAELD---------------------ERNTTYLRILKNRFTGGTGVAGPLEYDKETGRLSP 270 (271)
T ss_pred CCCCCC---------------------CCCEEEEEEEECCCCCCCCCEEEEEEECCCCEECC
T ss_conf 766667---------------------89828999993689899988898899689726697
No 22
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=0 Score=368.87 Aligned_cols=185 Identities=55% Similarity=0.821 Sum_probs=176.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 44321013776556416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 201 GVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 201 Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
||||||+.||+++|||+||+|+||||+||+|||+|++|+|.|+|.. +|++|+||||||+.++++.|
T Consensus 1 GIpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~--------------~g~~Vl~~slEm~~~~~~~R 66 (186)
T pfam03796 1 GLPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALK--------------QDKPVLFFSLEMSAEQLAER 66 (186)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHH
T ss_conf 9388807788642698888179999679998799999999999997--------------09966875475529999999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC
Q ss_conf 99998741011000121376889989999999862780782589988999999886402244474677671353256644
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK 360 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~ 360 (504)
++|+.++||.+++++|.+++++|.++.++..++.+.|+||+|.+++|+++|++++|+++.++++|+|||||||||.++..
T Consensus 67 ~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~ 146 (186)
T pfam03796 67 LLSSESRISSSKLRSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKA 146 (186)
T ss_pred HHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC
T ss_conf 99986267655541251216799999999999853986884799998999999999999855998899748986367788
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf -321137889999999999998827919997713822016
Q gi|254780332|r 361 -IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 361 -~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
...+|++++++|+++||.||+|++||||++|||||++|+
T Consensus 147 ~~~~~r~~~v~~i~~~Lk~lA~e~~i~ii~~sQlNR~~E~ 186 (186)
T pfam03796 147 SKSENRQQEISEISRSLKALAKELNIPVIALSQLSRAVEQ 186 (186)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 8775599999999999999999979918997225753359
No 23
>PRK05973 replicative DNA helicase; Provisional
Probab=100.00 E-value=5.3e-41 Score=331.67 Aligned_cols=174 Identities=22% Similarity=0.393 Sum_probs=143.5
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
=-++++||+||+|+|||||||||||+|++|+|.++++ +|++|+||||||+.+|++.|+.+...+
T Consensus 54 a~~l~~gLqPGDLIIlAARPsMGKTafaLnla~~A~k---------------~g~~v~fFSLEM~~~ql~~RL~~~~~~- 117 (237)
T PRK05973 54 AEELFGQLRPGDLVLLGARPGQGKTLLGLELAVEAMK---------------SGRTGVFFTLEYTEKDVLDRLRALGVD- 117 (237)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------HCCCEEEEEECCCHHHHHHHHHHCCCC-
T ss_conf 8998568998677999428988789999999999999---------------599669996159999999999972778-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHH
Q ss_conf 01100012137688998999999986278078258998899999988640224447467767135325664432113788
Q gi|254780332|r 289 PSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLE 368 (504)
Q Consensus 289 ~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~ 368 (504)
. .. ...++.|++.+.++..+| +|++++.++.++|||||||||.. +++.++
T Consensus 118 ---~--------~~-----------~~~~~~iD~sd~i~~~~i---~rrl~~~~~~~LIVIDYLQLM~~-----~r~~~e 167 (237)
T PRK05973 118 ---R--------AQ-----------FADLFEFDTSDAICADYI---IARLASAPRGTLVVIDYLQLLDQ-----RREKPD 167 (237)
T ss_pred ---H--------HH-----------CCCCCEECCCHHHHHHHH---HHHHHHCCCCCEEEEECHHHHCC-----CCCCCC
T ss_conf ---3--------34-----------067510038303339999---99985278996899976775266-----778866
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-HHCCEEEEEEC
Q ss_conf 9999999999998827919997713822016899998401014324223-31387889725
Q gi|254780332|r 369 ITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIE-QDADVVLFVIR 428 (504)
Q Consensus 369 i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE-qdAD~v~~l~R 428 (504)
+++|+|.||.||||++||||+||||||++|+|.||||+|||||=..-+. .-.|--+|||.
T Consensus 168 iseisRsLK~lAkEl~vPVvaLSQLnRs~E~R~dKrP~lSDLRlpnp~dl~lf~k~~fl~~ 228 (237)
T PRK05973 168 LSVQVRALKSFARKRGVILVFISQIDRSFDPASKPLPDIRDVRLPNPLDLSLFDKACFLNN 228 (237)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHEEECC
T ss_conf 8999999999999869939994003643223567899740136998210423032103127
No 24
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.85 E-value=3.4e-19 Score=165.62 Aligned_cols=207 Identities=28% Similarity=0.418 Sum_probs=156.2
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
.-++||+..||+.+ ||+-||.++.|||-||+|||+|+||+|.+.+. +|++|+|+|-|-|.+|+.
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~---------------~~~~vLYvSGEES~~QIk 126 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK---------------RGGKVLYVSGEESPEQIK 126 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECHHHHHHHH
T ss_conf 54447836665400577306717998259988688999999999986---------------399389982456789999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 78999987410110001213768899899999998627807825899889999998864022444746776713532566
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
.|.- |+. +.+.++|+... .+++.|.+.+.. .+++++|||-+|-|..+
T Consensus 127 ~RA~----------------------RLg-----~~~~~l~l~se--t~le~Il~~i~~----~kP~~lIIDSIQT~~~~ 173 (372)
T cd01121 127 LRAD----------------------RLG-----ISTENLYLLAE--TNLEDILASIEE----LKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHHH----------------------HHC-----CCCCCCEEEEC--CCHHHHHHHHHH----HCCCEEEEECHHHCCCC
T ss_conf 8999----------------------858-----78877278843--569999999997----19988999562202037
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 44-32113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 359 KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 359 ~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
.- ..-..-.||-+.+..|-.+||+.++|+++.-+.+.+. ++.+.--+|.--|+|+++.-+.
T Consensus 174 ~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVGHVTK~G-----------~iAGPkvLEHmVDtVl~fEgd~------- 235 (372)
T cd01121 174 ELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEG-----------SIAGPKVLEHMVDTVLYFEGDR------- 235 (372)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCCHHHEEEEEEEEEECCCC-------
T ss_conf 7677998789999999999999986197399998762688-----------6377403100213688751577-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCC
Q ss_conf 3332221110000001123388389999740899725999997468540200774
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSD 492 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~ 492 (504)
....=-|...|||+|++.++-+ |...-.-+.++.+
T Consensus 236 -------------------~~~~R~LR~~KNRFG~t~EiGv-FeM~~~GL~~V~n 270 (372)
T cd01121 236 -------------------HSEYRILRSVKNRFGSTNELGV-FEMRENGLREVSN 270 (372)
T ss_pred -------------------CCCEEEEEEECCCCCCCCEEEE-EEECCCCCEECCC
T ss_conf -------------------6550356741156777540588-8731687056368
No 25
>pfam00772 DnaB DnaB-like helicase N terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Probab=99.84 E-value=3.4e-20 Score=173.21 Aligned_cols=103 Identities=43% Similarity=0.600 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 78997899999999983297899999944296663798889999999999983998686438889731798323594899
Q gi|254780332|r 22 ESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQY 101 (504)
Q Consensus 22 ~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~y 101 (504)
.+|||+|||++||||+|.+|+.+.++.+.|+|+|||.+.||.||++|++++.+|.++|++||.++|++.+.++.+||.+|
T Consensus 1 ~~p~~~eaE~~lLg~lL~~~~~~~~i~~~l~~edF~~~~h~~If~~i~~l~~~~~~iD~~tl~~~l~~~~~~~~~gg~~y 80 (103)
T pfam00772 1 VPPHSIEAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILELYDKGKPIDPVTVAEELERKGKLEEVGGIAY 80 (103)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCHHHH
T ss_conf 93897999999999999697489999972799984959999999999999845699689999999976798142375999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999622112223677878789
Q gi|254780332|r 102 LARLASEAVSIINTEDYGRIIYG 124 (504)
Q Consensus 102 L~~L~~~~~s~~n~~~ya~~Ike 124 (504)
|.+|++.+++++|+.+|+++|+|
T Consensus 81 L~~L~~~~~~~~~~~~Ya~~v~e 103 (103)
T pfam00772 81 LAELADNVPSAANIEYYARIVKE 103 (103)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 99999829979999999998709
No 26
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.83 E-value=9.9e-19 Score=162.07 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=156.3
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
.-++||+..||+.+ ||+-||.++.+||.||+|||+|+||+|.++| +|.+|+|+|-|-|.+|+.
T Consensus 70 ~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la----------------~~~~vLYvSGEES~~Qik 133 (454)
T PRK11823 70 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA----------------AGGKVLYVSGEESLQQIK 133 (454)
T ss_pred CCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----------------CCCCEEEECCCHHHHHHH
T ss_conf 5323785566522158720664899507998889999999999985----------------599579981501578999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 78999987410110001213768899899999998627807825899889999998864022444746776713532566
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
.|.-- -+ +.+.+||+... .+++.|...+... +++++|||-+|-|..+
T Consensus 134 ~RA~R--Lg-------------------------~~~~~l~l~~e--t~l~~Il~~i~~~----~P~~lIIDSIQT~~~~ 180 (454)
T PRK11823 134 LRAER--LG-------------------------LPSDNLYLLAE--TNLEDILATIEEE----KPDLVVIDSIQTMYSP 180 (454)
T ss_pred HHHHH--HC-------------------------CCCCCCEEEEC--CCHHHHHHHHHHH----CCCEEEEECHHEEEEC
T ss_conf 99997--58-------------------------88887378853--6899999999860----9988999431115415
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 44-32113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 359 KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 359 ~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
.- ..-..-.||-+.+..|-.+||+.++|+++.-|.+.+. .+.+.-.+|.--|+|+++.-+.
T Consensus 181 ~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG-----------~iAGPkvLEHmVDtVl~fEGd~------- 242 (454)
T PRK11823 181 ELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEG-----------AIAGPRVLEHMVDTVLYFEGDR------- 242 (454)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----------CCCCCHHHHHHHCEEEEECCCC-------
T ss_conf 6677899789999999999999974498289999772677-----------6466145222010468751576-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCC
Q ss_conf 3332221110000001123388389999740899725999997468540200774
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSD 492 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~ 492 (504)
....=-|...|||+|+|.++-+ |...-.-+.++.+
T Consensus 243 -------------------~~~~RiLR~~KNRFG~t~EiGv-FeM~~~GL~~v~n 277 (454)
T PRK11823 243 -------------------HSRFRILRAVKNRFGATNEIGV-FEMTEKGLREVSN 277 (454)
T ss_pred -------------------CCCCEEEEEECCCCCCCCEEEE-EEECCCCCEECCC
T ss_conf -------------------6550245631246776660589-9861688456688
No 27
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.83 E-value=3.9e-18 Score=157.57 Aligned_cols=204 Identities=21% Similarity=0.324 Sum_probs=133.5
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
||||+..||+++ ||+.+|.++.|+|.||.|||+|++++|.+++. +|.+|+|++.|-.. ..|
T Consensus 1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~---------------~g~~v~YidtE~~~---~er 62 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG---------------QGKKVAYIDTEGLS---SER 62 (218)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCC---CHH
T ss_conf 998807899985699878879999899998499999999999863---------------69869999665567---699
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC--CCCCCCEEEECCHHHCCCC
Q ss_conf 99998741011000121376889989999999862780782589988999999886402--2444746776713532566
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK--RQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~gi~~vvIDYLqli~~~ 358 (504)
+.... +. + .+.+ ..++++.... ++.++...+..+. .+.++++||||-+|-+-..
T Consensus 63 ~~qi~-~~----------------~----~~~~-~~~i~v~~~~--~~~~~~~~i~~~~~~~~~~~~lvViDSi~tl~~~ 118 (218)
T cd01394 63 FRQIA-GD----------------R----PERA-ASSIIVFEPM--DFNEQGRAIQETETFADEKVDLVVVDSATALYRL 118 (218)
T ss_pred HHHHH-HH----------------H----HHHH-HCCCEEECCC--CHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 99998-75----------------3----6665-3051462678--7688999999999764147729999140455455
Q ss_pred ---CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCC
Q ss_conf ---44-32113788999999999999882791999771382201689999840101432422331387889725566164
Q gi|254780332|r 359 ---KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIR 434 (504)
Q Consensus 359 ---~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~ 434 (504)
+. ....+..+++...+.|..+|++.+||||+..|+...... ...+|. +.-.+|.-+|+|+++.+..
T Consensus 119 e~~~~~~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~nqVt~~~~~-~~~~p~-----GG~~LeH~vd~vl~~e~~~---- 188 (218)
T cd01394 119 ELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGS-GSVRPL-----GGHTLEHWSKVILRLEKLR---- 188 (218)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC-CCCCCC-----CCHHHHHHCCEEEEEECCC----
T ss_conf 406896479999999999999999987669889999215884577-756556-----7204141102899998488----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEE
Q ss_conf 42333322211100000011233883899997408997259999974
Q gi|254780332|r 435 NKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQ 481 (504)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~ 481 (504)
.+.--+.+-|||+||+|.+-+ |.
T Consensus 189 -----------------------~~~R~~~~~Knr~gp~~e~~~-F~ 211 (218)
T cd01394 189 -----------------------VGTRRAVLEKHRFRPEGSSVY-FR 211 (218)
T ss_pred -----------------------CCEEEEEEEECCCCCCCCEEE-EE
T ss_conf -----------------------967999997589999886899-99
No 28
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.83 E-value=2.1e-18 Score=159.61 Aligned_cols=204 Identities=22% Similarity=0.349 Sum_probs=137.7
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585-21799987
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE-MSSEQLAT 279 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE-Ms~~el~~ 279 (504)
||||+..||+++ ||+.+|.++.|+|.||.|||+|++++|.+++. +|++|+|++.| .+.+
T Consensus 5 isTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~---------------~g~~vlYidtE~~~~e---- 65 (224)
T PRK09361 5 LPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAAR---------------QGKKVIYIDTEGLSPE---- 65 (224)
T ss_pred ECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEECCCCCCHH----
T ss_conf 037978999862699888879999899998599999999999997---------------4990999678767889----
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH---HHHHCCCCCCCEEEECCHHHCC
Q ss_conf 8999987410110001213768899899999998627807825899889999998---8640224447467767135325
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATR---ARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~---~r~~~~~~gi~~vvIDYLqli~ 356 (504)
|+... ++... +++. .++++.+.. ++.+.... +..+. +.++++||||-++-+-
T Consensus 66 r~~qi-~~~~~--------------------~~~~-~~i~~~~~~--~~~~~~~~i~~~~~~~-~~~~~lvVIDSi~~~~ 120 (224)
T PRK09361 66 RFKQI-AGEDF--------------------EELL-SNIIIFEPS--SFEEQREAIQKAEKIA-KENVGLIVLDSATSLY 120 (224)
T ss_pred HHHHH-HCCCH--------------------HHHH-HCCEEECCC--CHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHE
T ss_conf 99998-56573--------------------4542-061472479--8899999999999875-0587389996230100
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCC
Q ss_conf ---66443211378899999999999988279199977138220168999984010143242233138788972556616
Q gi|254780332|r 357 ---TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYI 433 (504)
Q Consensus 357 ---~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~ 433 (504)
........+..++....+.|+.+|++++|+||+..|+.-.... ...+| .+.-.++.-+|+|+++-+..
T Consensus 121 ~~e~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vvl~nqV~~~~~~-~~~~p-----aGg~~l~h~~d~~l~le~~~--- 191 (224)
T PRK09361 121 RLELDDNDNSKLNRELGKQISHLLSLARKHNIAVVITNQVYSDIDS-DGLRP-----LGGHTLEHWSKAILRLEKLR--- 191 (224)
T ss_pred EHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC-CCCCC-----CCCCCEEEEEEEEEEEEECC---
T ss_conf 0001457658999999999999999999719869999668852676-54444-----65412221057999996258---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 44233332221110000001123388389999740899725999997468
Q gi|254780332|r 434 RNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAE 483 (504)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~ 483 (504)
.+.--+.+.|||.||+|.+.. |...
T Consensus 192 ------------------------~~~R~l~v~Knr~~p~~~~~~-f~it 216 (224)
T PRK09361 192 ------------------------NGKRRATLEKHRSRPEGESAE-FRIT 216 (224)
T ss_pred ------------------------CCEEEEEEEECCCCCCCCEEE-EEEC
T ss_conf ------------------------977999997589899996799-9986
No 29
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.77 E-value=2e-16 Score=144.55 Aligned_cols=213 Identities=19% Similarity=0.271 Sum_probs=141.3
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
||||.+.||+++ ||+.+|.++-|.|.||.|||+|++++|.+++.... ....+..|+|++.|-+-. .+|
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~---------~~g~~~~vvyIdtE~~f~--~~R 69 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIE---------LGGLEGKAVYIDTEGTFR--PER 69 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH---------HCCCCCEEEEEECCCCCC--HHH
T ss_conf 988857899650799647879999999998499999999999842475---------367896299995367758--899
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH----HHHCCCCCCCEEEECCHHHC-
Q ss_conf 9999874101100012137688998999999986278078258998899999988----64022444746776713532-
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRA----RRLKRQRGLDLLIVDYIQLM- 355 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~----r~~~~~~gi~~vvIDYLqli- 355 (504)
+..+.... + ... +.+- .++++.+.. ++.++...+ ..+...+++++||||-++-+
T Consensus 70 l~qia~~~-------~-~~~----------~~~l-~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia~l~ 128 (235)
T cd01123 70 LVQIAERF-------G-LDP----------EEVL-DNIYVARAY--NSDHQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred HHHHHHHH-------C-CCH----------HHHH-CCEEEECCC--CHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHH
T ss_conf 99999971-------3-472----------4542-254796379--9999999999999987303772399996104555
Q ss_pred CC---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCC---CCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 56---644321137889999999999998827919997713822016--899---9984010143242233138788972
Q gi|254780332|r 356 TT---SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN--RDN---KRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~---~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~--r~~---krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+. .......|...+..+++.||.+|+++++|||+.-|+.-..+. ..+ -+|.+ .-..+.-+++.++|.
T Consensus 129 r~e~~~~~~~~~r~~~l~~~~~~L~~lA~~~~~aVvvtNqvt~~~~~~~~~~~~~~~pal-----G~~w~h~v~~rl~l~ 203 (235)
T cd01123 129 RAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARPDGAAMFGGDPKKPAG-----GNIWAHASTTRLYLR 203 (235)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCCCCCCCCCCCCCC-----HHHHHHHCCEEEEEE
T ss_conf 666448864478999999999999999998097999968065506764245788643450-----266785385999999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 556616442333322211100000011233883899997408997259999
Q gi|254780332|r 428 RDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTL 478 (504)
Q Consensus 428 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~ 478 (504)
|.. . +.--+.|.|||++|.+.+.+
T Consensus 204 ~~~-----~----------------------~~R~l~v~ks~~~p~~~~~f 227 (235)
T cd01123 204 KGR-----G----------------------EERIAKIVDSPHLPEGEAVF 227 (235)
T ss_pred ECC-----C----------------------CEEEEEEEECCCCCCEEEEE
T ss_conf 479-----9----------------------71899998689999817999
No 30
>KOG2373 consensus
Probab=99.77 E-value=7e-18 Score=155.62 Aligned_cols=260 Identities=19% Similarity=0.274 Sum_probs=193.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 665430134336778999998741123664432-1013776556416772677621310027699999999998510111
Q gi|254780332|r 172 DGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVST-GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAE 250 (504)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~T-G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~ 250 (504)
..++.++.+.-++.+.++.. -+.+.|+.+ -|+.||++++|.+||+|+|+.|.+|.|||+|....++..+.
T Consensus 229 hk~i~sf~~mRe~ilseL~N----~e~v~G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~----- 299 (514)
T KOG2373 229 HKGIRSFTDMREGILSELLN----TERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT----- 299 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHCEEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHH-----
T ss_conf 53020499888889998750----566524000020688998536787726998568889823675676589986-----
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-----C
Q ss_conf 23333321247975899958521799987899998741011000121376889989999999862780782589-----9
Q gi|254780332|r 251 LQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-----G 325 (504)
Q Consensus 251 ~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-----~ 325 (504)
||.+.++-|+||+...++.-++-.-+|-++. +....+.....++..+|+|+---. .
T Consensus 300 ----------QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~---------drl~~y~HWadrFErlplyfmtfhgqq~~~ 360 (514)
T KOG2373 300 ----------QGVNTLWGSFEIPNKRLAHWMLVQYAGYRLL---------DRLNSYKHWADRFERLPLYFMTFHGQQFME 360 (514)
T ss_pred ----------HHHHHEEEEEECCHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHHHHCCCHHHHHHCCCCHHH
T ss_conf ----------3224406500436089999999997167237---------555456678998752636761024610688
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 88999999886402244474677671353256644321137889999999999998827919997713822016899998
Q gi|254780332|r 326 ISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRP 405 (504)
Q Consensus 326 ~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP 405 (504)
..+++|.-.+ .-+++--||||-||.|-.-+....+|..+-..|-...+.+|...||.|-++-.=- . .+.|+.-
T Consensus 361 ~vi~~i~ha~----yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT~nn~HvTlVvHPR-K--ed~d~El 433 (514)
T KOG2373 361 KVINEIAHAI----YVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFATQNNIHVTLVVHPR-K--EDGDTEL 433 (514)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-C--CCCCCEE
T ss_conf 8999998999----8875464445557887464301000456677899999987542660699996566-5--6787443
Q ss_pred CCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCC
Q ss_conf 4010143242233138788972556616442333322211100000011233883899997408-997259999974685
Q gi|254780332|r 406 QLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQR-HGPTGTVTLAFQAEF 484 (504)
Q Consensus 406 ~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR-~G~~g~~~~~f~~~~ 484 (504)
..+...+|--.-|.||.|+.+-+. +.+..+|.--|-|+||| .|..|..+|.|+..-
T Consensus 434 ~t~s~fGsAkatQEADNVliiQdk-----------------------rl~~~rgkkyLqi~KNRy~Gdvg~~pLEf~kn~ 490 (514)
T KOG2373 434 DTQSFFGSAKATQEADNVLIIQDK-----------------------RLDRDRGKKYLQILKNRYYGDVGSDPLEFVKNP 490 (514)
T ss_pred EEHHHCCCCCCCCCCCCEEEEEEC-----------------------CCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 310103411101013627998502-----------------------345665534655432124575465520551587
Q ss_pred CCEEE
Q ss_conf 40200
Q gi|254780332|r 485 TRFSA 489 (504)
Q Consensus 485 ~~f~~ 489 (504)
..|+-
T Consensus 491 ltyS~ 495 (514)
T KOG2373 491 LTYSH 495 (514)
T ss_pred CCCCC
T ss_conf 63202
No 31
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-16 Score=146.18 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=152.8
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
.-++||+..||+.+ ||+-||.++.|||-||.|||++.||++.+.|.. + +|||.|-|-|..|+.
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~---------------~-~vLYVsGEES~~Qik 136 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---------------G-KVLYVSGEESLQQIK 136 (456)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC---------------C-CEEEEECCCCHHHHH
T ss_conf 423578188876536772366179973689877989999999998705---------------9-579996776789999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 78999987410110001213768899899999998627807825899889999998864022444746776713532566
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
.|.. .-+++. .++|+ .+..++++|.+.+.. ..++++|||-+|-|-.+
T Consensus 137 lRA~--RL~~~~-------------------------~~l~l--~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 137 LRAD--RLGLPT-------------------------NNLYL--LAETNLEDIIAELEQ----EKPDLVVIDSIQTLYSE 183 (456)
T ss_pred HHHH--HHCCCC-------------------------CCEEE--EHHCCHHHHHHHHHH----CCCCEEEEECCCEECCC
T ss_conf 9999--828996-------------------------45577--411289999999985----49978999654123026
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 44-32113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 359 KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 359 ~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
.- ..-..-.||-+.+..|-.+||+.|++++...+...+.+ +.+.--+|.=-|+|++...+.
T Consensus 184 ~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~-----------IAGPrvLEHmVDtVlyFEGd~------- 245 (456)
T COG1066 184 EITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGA-----------IAGPRVLEHMVDTVLYFEGDR------- 245 (456)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCCHHEEEEEEEEEEEECCC-------
T ss_conf 33579985899999999999999875973999988824663-----------268400436536899983057-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCC
Q ss_conf 333222111000000112338838999974089972599999746854020077446
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSS 494 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~ 494 (504)
....=-|.-.|||+|++.++-+ |...-.-+.++.+..
T Consensus 246 -------------------~~~~RiLR~vKNRFG~t~EiGv-FeM~~~GL~eV~npS 282 (456)
T COG1066 246 -------------------HSRYRILRSVKNRFGATNELGV-FEMTENGLREVSNPS 282 (456)
T ss_pred -------------------CCCEEEEEHHCCCCCCCCCEEE-EEEECCCEEEECCCH
T ss_conf -------------------7755650032136776553268-898438846803827
No 32
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.72 E-value=2.3e-15 Score=136.45 Aligned_cols=214 Identities=25% Similarity=0.263 Sum_probs=139.2
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
||||++.||+++ ||+.+|.+++|.|.||.|||.|+++++.+.|.. +|.+|+|+|+|.+.+++..+
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~--------------~ge~~lYis~ee~~~~l~~~ 66 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALE--------------YGEPGVYVTLEEPPEDLREN 66 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEEECCCHHHHHHH
T ss_conf 9889556886316998299699998589725999999999999986--------------58968999813799999999
Q ss_pred HHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf 99998741011000-12137688998999999986278078258998899999988640224447467767135325664
Q gi|254780332|r 281 IISEQTEVPSSKIR-RGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 281 ~is~~s~I~~~~i~-~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
+-+. |++..++. .|++.-- .+..... . ...+....++.++...+.....+++++.||||-+.-+....
T Consensus 67 ~~~~--g~~~~~~~~~g~l~i~------d~~~~~~--~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~ 135 (231)
T pfam06745 67 AKSF--GWDLEKLEEEGKLAII------DASTSGI--G-IAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLL 135 (231)
T ss_pred HHHC--CCCHHHHHHCCCEEEE------ECCCCCC--C-CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC
T ss_conf 9982--9985898646967898------6254422--2-10011227999999999999997199889997641640058
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-HCCEEEEEECHHHCCCCCCC
Q ss_conf 43211378899999999999988279199977138220168999984010143242233-13878897255661644233
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ-DADVVLFVIRDEYYIRNKEP 438 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq-dAD~v~~l~R~~~y~~~~~~ 438 (504)
. ..++-.....|....++.+|.++..++..-.. + --...++|. -||.||.|...+..+
T Consensus 136 ~-----~~~~r~~l~~l~~~lk~~g~t~l~t~e~~~~~-------~----~~~~~~~~~~l~D~vI~L~~~~~~~----- 194 (231)
T pfam06745 136 K-----PAMAREILRRLKRVLKKLGVTAIFTSEKPSGE-------G----GIGGYGVEEFVVDGVIRLDLKEIEG----- 194 (231)
T ss_pred C-----HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-------C----CCCCCCHHHHEEEEEEEEEEECCCC-----
T ss_conf 8-----99999999999999997699199998212577-------7----6567630111003699999882499-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 332221110000001123388389999740899725999997
Q gi|254780332|r 439 TNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
+-.=.|.|.|.|..+...-...|
T Consensus 195 -------------------~~~R~l~I~K~Rg~~~~~~~~~f 217 (231)
T pfam06745 195 -------------------ELVRTIEIVKMRGTPHSMKRYPF 217 (231)
T ss_pred -------------------EEEEEEEEEECCCCCCCCCEEEE
T ss_conf -------------------89999999986699878947999
No 33
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.69 E-value=8.3e-16 Score=139.83 Aligned_cols=209 Identities=23% Similarity=0.368 Sum_probs=152.1
Q ss_pred CCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 4432101377655-641677267762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 201 GVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 201 Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
-+.|||..||+.+ ||.-||-|+.|||.||+|||||.|+++...|.. -..|||+|-|-|-.|+..
T Consensus 84 rf~s~~~ElDrVLGGGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~---------------~~~~LYVsGEES~~Q~kl 148 (481)
T TIGR00416 84 RFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN---------------SMKVLYVSGEESLQQIKL 148 (481)
T ss_pred EEECCCCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC---------------CCCEEEEEECCHHHHHHH
T ss_conf 05306641001106722244169846889963567899999998404---------------881689972301677888
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 89999874101100012137688998999999986-27807825899889999998864022444746776713532566
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQ-KLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
|..=. ||. ++.+. .+..+.+..+. ..+||+ -+-.++++|.+.+..++ +.++|||-+|-|..+
T Consensus 149 RA~RL--Git-------~~~~~--sqaqdGinnlahdG~L~~--L~Et~~e~I~~~~e~~~----P~~~ViDSIQ~ly~~ 211 (481)
T TIGR00416 149 RATRL--GIT-------DLVEP--SQAQDGINNLAHDGNLYV--LSETNLEQICAEIEELN----PQVVVIDSIQTLYLP 211 (481)
T ss_pred HHHHC--CCC-------CCCCH--HHHHHHHHHHHCCCCCCC--CCCCCHHHHHHHHHHHC----CCEEEEECCCCCCCH
T ss_conf 87545--532-------47870--234432454302675321--57579899999998529----948999142100000
Q ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 4-432113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 359 K-KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 359 ~-~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
. ...-..--||=|+|-.|-.+||.-+|||+.+=.+..+. . |.+.--+|.--|+|+++-=| .
T Consensus 212 di~SaPGSVsQVRE~t~~Lmr~AKt~~iaifiVGHVTKeG------s-----iAGPkvLEH~vD~vLyfeGd------~- 273 (481)
T TIGR00416 212 DISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEG------S-----IAGPKVLEHMVDTVLYFEGD------R- 273 (481)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC------C-----CCCCHHHHHHHHHHEECCCC------C-
T ss_conf 0025888423888999999876521686579970043567------5-----43404666343311011588------7-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 33322211100000011233883899997408997259999
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTL 478 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~ 478 (504)
. .. .=-|.=-|||+|+|-++=+
T Consensus 274 -~-~~-----------------~R~LRS~KNRFGat~E~G~ 295 (481)
T TIGR00416 274 -D-SR-----------------FRILRSVKNRFGATNEIGI 295 (481)
T ss_pred -C-CC-----------------CCHHHCCCCCCCCCCCCCC
T ss_conf -5-34-----------------4401000156787342101
No 34
>PRK04328 hypothetical protein; Provisional
Probab=99.68 E-value=7.9e-15 Score=132.39 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=138.2
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
++||++.||+++ |||.+|..++|+|.||.|||+|++|++.+.|+ +|.+|+|+|+|.+.+++..+
T Consensus 6 v~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~---------------~GE~~lyis~eE~~~~l~~~ 70 (250)
T PRK04328 6 VKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------------MGEPGIYVALEEHPVQVRRN 70 (250)
T ss_pred ECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEEECCHHHHHHH
T ss_conf 035856678751599879969999828999989999999999987---------------69977999972799999999
Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHH--HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 9999874101100-0121376889--989999999862780782589988999999886402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKI-RRGELTRPDY--EKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i-~~g~l~~~e~--~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
+-+. |.+..+. ..|.+.--+. ..+..+. ...+..+.+ + .++.++...++...++++.+.||||-+.-+..
T Consensus 71 ~~~~--G~d~~~~~~~g~l~iid~~~~~~~~~~---~~~~~~~~~-~-~~~~~~~~~l~~~i~~~~~~rvVIDSit~l~~ 143 (250)
T PRK04328 71 MAQF--GWDVRKYEEEGKFAIVDAFTGGIGEAA---EREKYVVKD-P-DDVRELIDVLRQAIRDIGAKRVVIDSVSTLYL 143 (250)
T ss_pred HHHC--CCCHHHHHHCCCEEEEECCCCCCCCCC---HHHHHCCCC-C-CCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 9980--998689865697799851233334200---000101368-5-35999999999999851898899937078774
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
.... ... ..-..|...-+.++|..+..++..-..+ + ....++|.-+|.||.|+..+..+..
T Consensus 144 ~~~~--~~r----~~l~~l~~~l~~~g~Ttll~~e~~~~~~------~-----~~~~~ve~~~DgvI~L~~~~~~~~~-- 204 (250)
T PRK04328 144 TKPA--VAR----SIVMQLKRVLAGLGCTSIFVSQVSVGER------G-----FGGPGVEHAVDGIIRLDLDEIDGEL-- 204 (250)
T ss_pred CCHH--HHH----HHHHHHHHHHHHCCCEEEEEECCCCCCC------C-----CCCCCEEEEEEEEEEEEEECCCCEE--
T ss_conf 5858--899----9999999999868986999971003656------6-----6778658999899998887139979--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 3332221110000001123388389999740899725999997
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
.=-|.|.|.|..+..+-...|
T Consensus 205 ----------------------~R~l~I~KmRgs~h~~~~~~f 225 (250)
T PRK04328 205 ----------------------KRSLIVWKMRGTKHSMRRHPF 225 (250)
T ss_pred ----------------------EEEEEEEECCCCCCCCCEEEE
T ss_conf ----------------------999999988699658956999
No 35
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.67 E-value=7.5e-15 Score=132.55 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=139.7
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
++||.+.||+++ |||.+|..++|.|.||.|||+|+++++.++|+ .|.+++||++|-+.+++..|
T Consensus 248 v~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~---------------~GE~~l~~~FeE~~~~l~~~ 312 (501)
T PRK09302 248 ISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACR---------------RGERCLLFAFEESRAQLVRN 312 (501)
T ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEEECCHHHHHHH
T ss_conf 047973278872599758946999889998889999999999986---------------59908999996799999999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEE--CCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 99998741011000121376889989999999862780782--5899889999998864022444746776713532566
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID--QTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
+-+. |+++.... .+..|.|. +...+++++....+++...+++++.||||-|.-+...
T Consensus 313 a~~~--G~dl~~~~-------------------~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~ 371 (501)
T PRK09302 313 ATSW--GIDLEEME-------------------RKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG 371 (501)
T ss_pred HHHC--CCCHHHHH-------------------HCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 9973--99848887-------------------48947999837000598999999999999729989999580687652
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCC
Q ss_conf 44321137889999999999998827919997713822016899998401014324223313878897255661644233
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEP 438 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~ 438 (504)
.. . .++-..-.+|...-+..+|.++..+... ..- .-...++. .|..-||.|++|..-+.-+.-
T Consensus 372 ~~--~---~~~r~~l~~L~~~Lk~~gvT~l~t~~~~-~~~----g~~~~t~~----~iS~l~D~ii~Lry~E~~g~l--- 434 (501)
T PRK09302 372 GS--L---NEFRQFVIRLTDYLKQEEITGLFTNLTP-DFM----GSHSITES----HISSLTDTWILLQYVEINGEM--- 434 (501)
T ss_pred CC--H---HHHHHHHHHHHHHHHHCCCEEEEEEECC-CCC----CCCCCCCC----CHHHHCCEEEEEEEEEECCEE---
T ss_conf 68--5---9999999999999976897899976123-556----76644766----600111247899987138999---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf 332221110000001123388389999740899725
Q gi|254780332|r 439 TNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG 474 (504)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g 474 (504)
.=-|.|.|-|.++.-
T Consensus 435 ---------------------~R~i~VlK~R~s~h~ 449 (501)
T PRK09302 435 ---------------------NRALNVLKMRGSWHS 449 (501)
T ss_pred ---------------------EEEEEEEEECCCCCC
T ss_conf ---------------------898999993689657
No 36
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.66 E-value=4.3e-14 Score=126.75 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=131.7
Q ss_pred CCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 4432101377655-641677267762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 201 GVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 201 Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
-+|||++.||+++ |||.+|.+++|.|.||.|||+|++|++.+-|+. .|.+++|+|||.+++++..
T Consensus 5 Ri~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~--------------~GE~~lyitl~E~~~~l~~ 70 (501)
T PRK09302 5 KLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKS--------------FGEPGVFVTFEESPEDIIR 70 (501)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEECCCCHHHHHH
T ss_conf 21448711577854898899779998389999999999999999885--------------5997899985799999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC----------CCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8999987410110001213768899899999998627807825----------899889999998864022444746776
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQ----------TGGISMSQLATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d----------~~~~ti~~I~~~~r~~~~~~gi~~vvI 349 (504)
-+-+ -|.+...+. .+..++|.| .....++.+...++...++++++.|||
T Consensus 71 ~~~~--~g~~~~~~~-------------------~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvVi 129 (501)
T PRK09302 71 NVAS--FGWDLQKLI-------------------DEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVI 129 (501)
T ss_pred HHHH--CCCCHHHHH-------------------HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9998--499868973-------------------2683899961567431113344768999999999999719999999
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 71353256644321137889999999999998827919997713822016899998401014324223313878897255
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
|-|.-+........ ..-..-..|+...++.+|.+++++...-. . .++-..|--|--||.||.|+..
T Consensus 130 DSlt~l~~~~~~~~----~~R~~l~~L~~~l~~~g~T~llt~E~~~~--~--------~~~~~~g~Ee~vaDGVI~L~~~ 195 (501)
T PRK09302 130 DSIEALFQQYDNPA----VVRRELFRLFAWLKQKGVTAVMTGERGDE--Y--------GPIARYGVEEFVSDCVVILRNV 195 (501)
T ss_pred CCHHHHHHHCCCHH----HHHHHHHHHHHHHHHCCCEEEEEECCCCC--C--------CCCCCCCHHHHHCCEEEEEEEE
T ss_conf 99789987635878----99999999999998779779998756666--7--------8754345244201307887654
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf 661644233332221110000001123388389999740899725
Q gi|254780332|r 430 EYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG 474 (504)
Q Consensus 430 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g 474 (504)
.... ...=.|-|.|-|..+..
T Consensus 196 ~~~~------------------------~~~R~L~V~KmRGs~~~ 216 (501)
T PRK09302 196 LEGE------------------------KRTRTLEILKYRGTTHG 216 (501)
T ss_pred CCCC------------------------CCEEEEEEEECCCCCCC
T ss_conf 1488------------------------52589999983588666
No 37
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.56 E-value=1.4e-13 Score=122.75 Aligned_cols=207 Identities=19% Similarity=0.246 Sum_probs=130.6
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
||||++.||+++ |||.+|.+++|.|.||.|||+|+++++.+++. +|.+|+|||+|.+.+++..+
T Consensus 14 i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~---------------~g~~~~~~~~ee~~~~~~~~ 78 (241)
T PRK06067 14 ISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALN---------------QGKRGLAITTENTSKSYLKQ 78 (241)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCCHHHHHHH
T ss_conf 566875578650699779908999807998879999999999986---------------79829999942899999999
Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCEEEE--CCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 9999874101100-0121376889989999999862780782--589988999999886402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKI-RRGELTRPDYEKIVACSQVMQKLPLYID--QTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i-~~g~l~~~e~~~i~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
+-+. +.+.... ..|.+ .-.++... +........+...+.+...+++.++||||-|..+..
T Consensus 79 ~~~~--g~dl~~~~~~G~L---------------~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~ 141 (241)
T PRK06067 79 MESL--KLDISDFFIWGYL---------------RIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFAT 141 (241)
T ss_pred HHHC--CCCHHHHHHCCCC---------------EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHC
T ss_conf 9983--9985999866970---------------5783241113421556899999999999971998999928017541
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
... ..++-+.-+.|+.++. .++.+++.. ..... .... -..|+.-||.|+.|...++-+..
T Consensus 142 ~~~-----~~~~~~~l~~l~~l~~-~g~tvllt~--~~~~~----~~~~------~~~i~~vaD~vI~Lr~~~~~g~~-- 201 (241)
T PRK06067 142 YAS-----EDDVLNFFTECKNLCD-NGKTILITL--HPYAF----SEDT------LVRIRSICDVHLKLRKEQVGDRY-- 201 (241)
T ss_pred CCC-----HHHHHHHHHHHHHHHH-CCCEEEEEE--CCCCC----CCCC------CCCEEEEEEEEEEEEEEEECCEE--
T ss_conf 388-----8999999999999996-898899990--56764----7664------31248998999995878439999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CEE-EEEEEEC
Q ss_conf 33322211100000011233883899997408997--259-9999746
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGP--TGT-VTLAFQA 482 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~--~g~-~~~~f~~ 482 (504)
.=.|.|.|-|..+ +|. +++.=++
T Consensus 202 ----------------------~R~L~V~K~RGs~h~~g~~i~F~I~~ 227 (241)
T PRK06067 202 ----------------------VKVLEVVKLRGARKTTGNIISFDVDP 227 (241)
T ss_pred ----------------------EEEEEEEEECCCCCCCCCEEEEEECC
T ss_conf ----------------------99999999159989988888899838
No 38
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.56 E-value=1.3e-12 Score=115.49 Aligned_cols=215 Identities=19% Similarity=0.236 Sum_probs=137.9
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
||||...||.++ ||+..|.++-|.|.||.|||+|++++|.++...... ...+..|+|+..|-+-. ..|
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~---------~~~~g~vvyIDtE~~f~--~~r 69 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGEL---------GGLEGKVVYIDTEGAFR--PER 69 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC---------CCCCCEEEEEECCCCCC--HHH
T ss_conf 9887478998857998888399999999998999999999998542211---------69996199995577531--999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH---HHCCCCCCCEEEECCHHHCCC
Q ss_conf 99998741011000121376889989999999862780782589988999999886---402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR---RLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r---~~~~~~gi~~vvIDYLqli~~ 357 (504)
+-.+..... .+. ..-+ .++++.... ++.++...+. ....+.++++||||-+.-+-.
T Consensus 70 l~~i~~~~~--------~~~---------~~~l--~~i~~~~~~--~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r 128 (226)
T cd01393 70 LVQLAVRFG--------LDP---------EEVL--DNIYVARPY--NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR 128 (226)
T ss_pred HHHHHHHHC--------CCH---------HHHH--HHEEEECCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECC
T ss_conf 999987603--------266---------7764--333684379--9999999999999875247842899932200111
Q ss_pred CC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEECHHH
Q ss_conf 64----43211378899999999999988279199977138220168--9999840101432422331387889725566
Q gi|254780332|r 358 SK----KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVIRDEY 431 (504)
Q Consensus 358 ~~----~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~ 431 (504)
.. .....|...++...+.|+.+|.+++++||+..|+--....- ....|. +..+.+.-+.+.+.|.|..-
T Consensus 129 ~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avv~tNQv~~~i~~~~~~~~~p~-----gG~~w~~~~~~Ri~l~k~~~ 203 (226)
T cd01393 129 KEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGDPETPA-----GGNALAHASTTRLDLRKGRG 203 (226)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEECCCCCCCCCCCCC-----CHHHHHHHCEEEEEEEECCC
T ss_conf 4442762078999999999999999999849799996811781578789988787-----63664600269999996688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 1644233332221110000001123388389999740899725999
Q gi|254780332|r 432 YIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVT 477 (504)
Q Consensus 432 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~ 477 (504)
. .....-+.|.||.+.|-+.+.
T Consensus 204 ----~--------------------~~~~r~~~~~k~p~~p~~~~~ 225 (226)
T cd01393 204 ----I--------------------IGERRIAKVVKSPALPEAEAE 225 (226)
T ss_pred ----C--------------------CCCEEEEEEEECCCCCCCCCC
T ss_conf ----8--------------------788799999989899876687
No 39
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=99.50 E-value=1.2e-11 Score=108.18 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=138.5
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
+.-|+||-+.||.++ ||+..|.++=|.|.||.|||.|++++|.++..... ....+..|+|+..|-+=.
T Consensus 22 ~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~---------~gg~~g~vvyIDTEg~f~-- 90 (261)
T pfam08423 22 VIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLE---------MGGGEGKALYIDTEGTFR-- 90 (261)
T ss_pred CCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHH---------HCCCCCEEEEEECCCCCC--
T ss_conf 735778987899873798667729999899888789999999999407096---------569997289993688869--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH---HHHHHCCCCCCCEEEECCHHH
Q ss_conf 87899998741011000121376889989999999862780782589988999999---886402244474677671353
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLAT---RARRLKRQRGLDLLIVDYIQL 354 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~---~~r~~~~~~gi~~vvIDYLql 354 (504)
.+|+..+.-.. .++.++ -+. ++++.... +.++... .+..+..++++++||||-+--
T Consensus 91 ~eRl~qia~~~--------~~~~~~---------~L~--~I~v~r~~--~~~~~~~~l~~~~~~~~~~~v~LvVvDSiaa 149 (261)
T pfam08423 91 PERIVAIAERF--------GLDPEE---------VLD--NIAYARAY--NTEHQMQLLLQAAAMMSESRFALLIVDSATA 149 (261)
T ss_pred HHHHHHHHHHH--------CCCHHH---------HHH--HCEECCCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCE
T ss_conf 89999999982--------999789---------875--33141689--9899999999999987317834999832400
Q ss_pred -CCCCC--C-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf -25664--4-3211378899999999999988279199977138220168-----9999840101432422331387889
Q gi|254780332|r 355 -MTTSK--K-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR-----DNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 355 -i~~~~--~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r-----~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
.+..- + ....|.+.+..+++.|+.||.++|++||+.-|+-...... ...+|.+ .-.....+-+.++
T Consensus 150 lfR~e~~g~~~l~~R~~~L~~~l~~L~~lA~~~~~aVvvTNQV~~~~~~~~~f~~~~~~Pag-----G~~~~h~~~~Rl~ 224 (261)
T pfam08423 150 LYRTDFSGRGELAERQQHLAKFLRSLQRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG-----GHIMAHASTTRLY 224 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCCCCCCCC-----HHHHHHHCEEEEE
T ss_conf 23330036752899999999999999999998095899960479852886301378775750-----5777734208999
Q ss_pred EECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 72556616442333322211100000011233883899997408997259999
Q gi|254780332|r 426 VIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTL 478 (504)
Q Consensus 426 l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~ 478 (504)
|.|-. . +.=.+.+.|+++=|-|++.+
T Consensus 225 L~k~~-------g--------------------~~R~~~l~ksp~~pe~~~~F 250 (261)
T pfam08423 225 LRKGR-------G--------------------EQRVCKIYDSPCLPESEAVF 250 (261)
T ss_pred EEECC-------C--------------------CEEEEEEEECCCCCCCEEEE
T ss_conf 99669-------9--------------------84799998789999864899
No 40
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.43 E-value=7.4e-12 Score=109.74 Aligned_cols=162 Identities=29% Similarity=0.386 Sum_probs=116.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121376
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
++.|.|.||.|||+|++++|.+++. +|.+|+|++.|.+.+|+..|+.....+..
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~---------------~~~~~~~~~~ee~~~q~~~~~~~~~~~~~----------- 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---------------KGGKVVYVDIEEEIEELTERLIGESLKGA----------- 54 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCHHHHHHHHHHHHCCCC-----------
T ss_conf 9899989999899999999999876---------------39979999866644899999998622467-----------
Q ss_pred HHHHHHHHHHHHHHHCCEEE-ECCCCCC-HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf 88998999999986278078-2589988-99999988640224447467767135325664-432113788999999999
Q gi|254780332|r 301 PDYEKIVACSQVMQKLPLYI-DQTGGIS-MSQLATRARRLKRQRGLDLLIVDYIQLMTTSK-KIEENRVLEITGITMALK 377 (504)
Q Consensus 301 ~e~~~i~~a~~~l~~~~l~I-~d~~~~t-i~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~-~~~~~r~~~i~~is~~lK 377 (504)
+ .++++ ....... ...+.+.++++..+.+.++||||.+|-+..+. ........++.+....|-
T Consensus 55 ------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiiDSit~~~~a~~e~~~g~~~~v~~~~~~L~ 120 (165)
T cd01120 55 ------------L--DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELL 120 (165)
T ss_pred ------------C--CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf ------------1--30799935999769999999999999869977999928899887740015886789999999999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 999882791999771382201689999840101432422331387889725
Q gi|254780332|r 378 ALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 378 ~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
..|++.+|+++...|+..+.... |. ..+++..++.-+|.+++|.|
T Consensus 121 ~~Ak~~~itvi~i~~v~~d~~~~----~~--~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 121 ERARKGGVTVIFTLQVPSGDKGD----PR--LTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred HHHHCCCCEEEEEEEEECCCCCC----CC--CCCHHHHHHHHCCEEEEEEC
T ss_conf 99977982899999843377899----77--25388888364266999839
No 41
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.39 E-value=9.9e-12 Score=108.80 Aligned_cols=189 Identities=27% Similarity=0.335 Sum_probs=127.2
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
..+|||++.||+++ |||.+|.+++|.|.||.|||+|++|++.+.|. .|.+|+|+|+|.+.+++.
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------------~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR---------------EGEPVLYVSTEESPEELL 67 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEEECCHHHHH
T ss_conf 65689974188883689889978999938998689999999997762---------------698589999206989999
Q ss_pred HHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 7899998741011-000121376889989999999862780782589988999999886402244474677671353256
Q gi|254780332|r 279 TRIISEQTEVPSS-KIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 279 ~R~is~~s~I~~~-~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
.-+.+ -|.+.. .+..|.+.-. .+..........+... ......+...++....+.+.+.+|+|-+..+.-
T Consensus 68 ~~~~~--~g~d~~~~~~~g~l~i~------d~~~~~~~~~~~~~~~-~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~ 138 (260)
T COG0467 68 ENARS--FGWDLEVYIEKGKLAIL------DAFLSEKGLVSIVVGD-PLDLEELLDRIREIVEKEGADRVVIDSITELTL 138 (260)
T ss_pred HHHHH--CCCCHHHHHHCCEEEEE------ECCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 99988--09977897544406876------3121112542010466-522899999999999862898899966307766
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
..... ...-.+...++.+.+++++..+..+|..- +.+.. +|-.|--+|.|+-|..
T Consensus 139 ~~~~~----~~~r~~~~~l~~~~~~~~~t~~~~~~~~~--~~~~~----------~~~~~~~vdgvI~l~~ 193 (260)
T COG0467 139 YLNDP----ALVRRILLLLKRFLKKLGVTSLLTTEAPV--EERGE----------SGVEEYIVDGVIRLDL 193 (260)
T ss_pred HCCCH----HHHHHHHHHHHHHHHHCCEEEEEEECCCC--CCCCC----------CCCEEEEEEEEEEEEE
T ss_conf 52782----57899999999876506848999974433--46665----------6614216899999977
No 42
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.38 E-value=5.3e-11 Score=103.26 Aligned_cols=176 Identities=20% Similarity=0.173 Sum_probs=110.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 77621310027699999999998510111233333212479758999585217999878999987410110001213768
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRP 301 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~ 301 (504)
++|.|.||.|||+|+++++.+.|+ +|.+|+|+|+|.+.+++..++-+. |.+..++.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~---------------~ge~~lyis~eE~~~~l~~~~~~~--g~d~~~~~------- 57 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------------RGEPGLYVTLEESPEELIENAESL--GWDLERLE------- 57 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEECCCHHHHHHHHHHC--CCCHHHHH-------
T ss_conf 158768999999999999999987---------------699789999507999999999983--99858986-------
Q ss_pred HHHHHHHHHHHHHHCCEEEECCC--------CCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 89989999999862780782589--------9889999998864022444746776713532566443211378899999
Q gi|254780332|r 302 DYEKIVACSQVMQKLPLYIDQTG--------GISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGIT 373 (504)
Q Consensus 302 e~~~i~~a~~~l~~~~l~I~d~~--------~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is 373 (504)
.+..+.|.|.. ......+...+.....+++++.||||-++-+..... . .....+.
T Consensus 58 ------------~~g~l~i~~~~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~~-~----~~~~~~~ 120 (187)
T cd01124 58 ------------DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQ-S----TARLEIR 120 (187)
T ss_pred ------------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCH-H----HHHHHHH
T ss_conf ------------4585689962620022033323678999999999984998999948688752566-6----6899999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998827919997713822016899998401014324223313878897255661644233332221110000001
Q gi|254780332|r 374 MALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQED 453 (504)
Q Consensus 374 ~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~ 453 (504)
+-++ ..++.+|.++..++..-.. .+....+.++.-||.||.|+..++.+..
T Consensus 121 ~l~~-~l~~~~~t~ll~~e~~~~~----------~~~~~~~~~~~l~DgiI~L~~~~~~~~~------------------ 171 (187)
T cd01124 121 RLLF-ALKRFGVTTLLTSEQSGLE----------GTGFGGGDVEYLVDGVIRLRLDEEGGRL------------------ 171 (187)
T ss_pred HHHH-HHHHCCCCEEEEEEECCCC----------CCCCCCCCEEEEEEEEEEEEEEECCCEE------------------
T ss_conf 9999-9997699689999742566----------7667888477997899999788049979------------------
Q ss_pred CCCCCCEEEEEEEECCCCCC
Q ss_conf 12338838999974089972
Q gi|254780332|r 454 LKRVKGIADIIIAKQRHGPT 473 (504)
Q Consensus 454 ~~~~~~~~elivaKnR~G~~ 473 (504)
.=.|.|.|.|.++-
T Consensus 172 ------~R~l~I~KmRgs~H 185 (187)
T cd01124 172 ------RRSLSVVKMRGGPH 185 (187)
T ss_pred ------EEEEEEEECCCCCC
T ss_conf ------99999998589989
No 43
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.37 E-value=4.9e-10 Score=95.91 Aligned_cols=217 Identities=19% Similarity=0.254 Sum_probs=134.7
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
+.-|+||-+.||+++ ||+..|.++=|.|.||.|||.|++++|.++.... ....-+..|+|+..|-+=.
T Consensus 82 ~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~---------~~GGl~g~vvYIDTEgtF~-- 150 (318)
T PRK04301 82 IGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPE---------EEGGLEGKAVYIDTENTFR-- 150 (318)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCH---------HHCCCCCCEEEEECCCCCC--
T ss_conf 78247888788805479833670788866887870356677676533767---------7789886379995689869--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHHCC-CCCCCEEEECCHH
Q ss_conf 87899998741011000121376889989999999862780782589988999---9998864022-4447467767135
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ---LATRARRLKR-QRGLDLLIVDYIQ 353 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~---I~~~~r~~~~-~~gi~~vvIDYLq 353 (504)
.+|+..+..+. .++.++ .+ .++++.... +.++ +...+..+.. .+++++||||-+-
T Consensus 151 peRi~qia~~~--------g~d~~~---------~L--~nI~v~r~~--~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~ 209 (318)
T PRK04301 151 PERIEQMAEGL--------GLDPDE---------VL--DNIHVARAY--NSDHQMLLAEKAEELIKEGNNIKLVIVDSLT 209 (318)
T ss_pred HHHHHHHHHHH--------CCCHHH---------HH--HCEEEEECC--CHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 79999999984--------999789---------86--402686139--9899999999999999627880499994342
Q ss_pred H-CCCC--CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 3-2566--44-3211378899999999999988279199977138220168--999984010143242233138788972
Q gi|254780332|r 354 L-MTTS--KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 354 l-i~~~--~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
- .+.. ++ .-..|.+.++.+.+.|+.||.++|++||+.-|+--....- +..+|.+. -.+...+-+-++|.
T Consensus 210 alfR~e~~grg~l~~Rq~~L~~~l~~L~~lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG-----~~~ah~~t~Rl~Lr 284 (318)
T PRK04301 210 AHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGG-----HILGHTATFRIYLR 284 (318)
T ss_pred HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCC-----HHHHCCCCEEEEEE
T ss_conf 3212104685309999999999999999999985957999613675476556887635662-----14030151899999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf 5566164423333222111000000112338838999974089972599999
Q gi|254780332|r 428 RDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLA 479 (504)
Q Consensus 428 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~ 479 (504)
|- . .+.=...+.|.++=|.|++.+.
T Consensus 285 k~------~---------------------g~~R~~~l~~SP~lPe~~~~F~ 309 (318)
T PRK04301 285 KS------K---------------------GDKRIARLVDSPHLPEGEAVFR 309 (318)
T ss_pred EC------C---------------------CCEEEEEEEECCCCCCEEEEEE
T ss_conf 76------8---------------------9879999977889997278999
No 44
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.37 E-value=2.8e-10 Score=97.78 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=140.5
Q ss_pred CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
+.-||||-..||..+ ||+..|.++.|+|.++.|||+||++++.++-+ .|..|+||-.|-+-..
T Consensus 33 ~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk---------------~gg~~~~iDaE~a~d~ 97 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK---------------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEHHHCCCH
T ss_conf 5346268199999975899668808999889877799999999999873---------------5983999962542598
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
.++. .-||+..++. +. .|. +.++....+..+.+...+|+||||-+.-+.
T Consensus 98 ---~~a~-~lGVD~~~l~-------------------------~~-qp~-~~Eq~l~i~~~li~s~~~dliViDSvaal~ 146 (325)
T cd00983 98 ---VYAK-KLGVDLDNLL-------------------------IS-QPD-TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ---HHHH-HCCCCHHHEE-------------------------EE-CCC-HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf ---9999-8099846758-------------------------96-663-899999999997515887679981511236
Q ss_pred CCCCC----CC----HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 66443----21----13788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 357 TSKKI----EE----NRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 357 ~~~~~----~~----~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
+.... ++ -...-++.-.|.|..+....+|++|...|+--..-.- -..|..+ -+..++...|.+.|-+-|
T Consensus 147 p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~k~~~~lIfiNQ~R~kiG~m-fg~pe~t--~GG~Alkf~aSvrl~l~k 223 (325)
T cd00983 147 PKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVM-FGNPETT--TGGNALKFYSSVRLDIRR 223 (325)
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCC-CCCCCCC--CCCCCHHCCCEEEEEEEE
T ss_conf 5788760113211438999999999999987533780799955432215775-6898537--997505512113899976
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE---EEEEEEECCCCCEEEC
Q ss_conf 5661644233332221110000001123388389999740899725---9999974685402007
Q gi|254780332|r 429 DEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG---TVTLAFQAEFTRFSAL 490 (504)
Q Consensus 429 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g---~~~~~f~~~~~~f~~~ 490 (504)
.+. ... ..+...+.+.+-|.|||.++.+ .+.+.|..-..+..++
T Consensus 224 ~~~-------ik~-----------~~~~iG~~ikvkv~KnK~a~P~r~a~~~i~yg~GId~~~el 270 (325)
T cd00983 224 IET-------IKD-----------GDEVIGNRTKVKVVKNKVAPPFKTAEFDILFGEGISREGEI 270 (325)
T ss_pred CCC-------CCC-----------CCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 131-------257-----------88507769999999788689986799994678763425329
No 45
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.36 E-value=1.8e-10 Score=99.21 Aligned_cols=208 Identities=17% Similarity=0.265 Sum_probs=134.7
Q ss_pred CCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 4432101377655-641677267762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 201 GVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 201 Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
-|..+=..||+.+ ||+.+|.+++|.|.||.|||.|++++++..++ +|.+|+|+|.|.+..++..
T Consensus 5 ~~~~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~---------------~g~~~~yis~e~t~~~~i~ 69 (230)
T PRK08533 5 KIELDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQ---------------NGYSVSYVSSQLTTTEFIK 69 (230)
T ss_pred CEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCCHHHHHH
T ss_conf 0105713578871789889848999868998789999999999987---------------8986999994389999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCC----CHHHHHHHHHHHCCCCCCCEEEECCHH-H
Q ss_conf 89999874101100012137688998999999986278078258998----899999988640224447467767135-3
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGI----SMSQLATRARRLKRQRGLDLLIVDYIQ-L 354 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~----ti~~I~~~~r~~~~~~gi~~vvIDYLq-l 354 (504)
.+-|.--+|.- .+..|++ +|+.-.|.. .-.+.-.++-.-.+.++-|+||||-+. |
T Consensus 70 qm~s~g~di~~-~~~~G~l-------------------~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l 129 (230)
T PRK08533 70 QMMSLGYDINK-KLISGKL-------------------LYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSL 129 (230)
T ss_pred HHHHCCCCCHH-HHHCCCE-------------------EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 99986998179-9757967-------------------999613433540457899999973266437989999053188
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCC
Q ss_conf 25664432113788999999999999882791999771382201689999840101432422331387889725566164
Q gi|254780332|r 355 MTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIR 434 (504)
Q Consensus 355 i~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~ 434 (504)
+.... ....+-++...||.++..-.+-++++.|-.-.- .. -+.++.-||+++.|...++.+.
T Consensus 130 ~~~~~-----~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e-------~~------l~~lrs~aDv~i~L~~~~vGg~ 191 (230)
T PRK08533 130 VSRDA-----SEVQIRDLMAFFKRISSLNKVIILTANPKELPE-------SV------LLILRTASTILIRLEVKVFGGD 191 (230)
T ss_pred HHCCC-----CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HH------HHHHHEEEEEEEEEEEEECCCE
T ss_conf 51677-----789999999999999858988999956331362-------45------4420410489999873610988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CCCE-EEEEEEECCCC
Q ss_conf 423333222111000000112338838999974089--9725-99999746854
Q gi|254780332|r 435 NKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRH--GPTG-TVTLAFQAEFT 485 (504)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~--G~~g-~~~~~f~~~~~ 485 (504)
-. --+.|.|-|. |+++ .+.+.=++.++
T Consensus 192 ~~------------------------r~i~V~K~~ga~~~~~~~I~F~V~pg~G 221 (230)
T PRK08533 192 LK------------------------NSAKIVKYNMAKGSFQKIIPFRVEPGLG 221 (230)
T ss_pred EE------------------------EEEEEEEECCCCCCCCCEEEEEECCCCC
T ss_conf 99------------------------9999998448987778647899806876
No 46
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=99.35 E-value=6.7e-10 Score=94.83 Aligned_cols=224 Identities=19% Similarity=0.246 Sum_probs=140.4
Q ss_pred CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
+.-||||-..||..+ ||+..|.++.|+|.++.|||+||++++.++-+ +|..|+||-.|-+-..
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk---------------~gg~~~~iD~E~a~d~ 94 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQK---------------AGGTAAFIDAEHALDP 94 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEHHHHCCH
T ss_conf 5446158089999875899778708999889877789999999999973---------------4993899853660598
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
-.. ..-||+.+++. +. .|. +.++....+..+.+...+++||||-+.-+.
T Consensus 95 ~~a----~~lGVD~~~l~-------------------------~~-qpd-~~Eqal~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 95 VYA----KKLGVDIDNLL-------------------------VS-QPD-TGEQALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred HHH----HHCCCCHHHEE-------------------------EE-CCC-HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 899----98098802538-------------------------97-788-399999999998537997659982534567
Q ss_pred CCCCCC--------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 664432--------113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 357 TSKKIE--------ENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 357 ~~~~~~--------~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
+..... ..+..-++...|.|..+....++|+|...|+--..-.- -..|... -+.-++...|.+.|-+-|
T Consensus 144 p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k~~~~~IfiNQ~R~kiG~m-fg~pe~t--~GG~Alkf~aSvri~l~k 220 (322)
T pfam00154 144 PKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIRMKIGVM-FGNPETT--TGGNALKFYASVRLDIRR 220 (322)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCC-CCCCCCC--CCCCHHHCCEEEEEEEEE
T ss_conf 6888752432232135799999999999999730585499976551114664-6998547--786425411003787765
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE---EEEEEEECCCCCEEE
Q ss_conf 5661644233332221110000001123388389999740899725---999997468540200
Q gi|254780332|r 429 DEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG---TVTLAFQAEFTRFSA 489 (504)
Q Consensus 429 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g---~~~~~f~~~~~~f~~ 489 (504)
.+. .+ ...+...+.+.+-|.|||.++.. .+.+.|..-..+..+
T Consensus 221 ~~~-------iK-----------~g~~~vG~~i~~kvvKnK~a~P~~~ae~~i~y~~GId~~~~ 266 (322)
T pfam00154 221 IGA-------IK-----------KGEEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISKEGE 266 (322)
T ss_pred ECC-------CC-----------CCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHH
T ss_conf 010-------14-----------67863369999999836748998679999615887664325
No 47
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.33 E-value=8.4e-11 Score=101.71 Aligned_cols=221 Identities=16% Similarity=0.167 Sum_probs=139.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217999878999987410110001213
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGEL 298 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l 298 (504)
|.+-+++|.||.|||.|++++|..+|.-..+.- .........+|+||++|-+.+++..|+-+.............-+
T Consensus 1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g---~~~~~~~~G~Vly~~~Ed~~~~l~rRl~a~~~~~~~~~~~~rl~ 77 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFG---GGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLF 77 (239)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 938999808998889999999999975996568---98546877619999788998999999999998638665554166
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7688998999999986278078258-998899999988640224447467767135325664432113788999999999
Q gi|254780332|r 299 TRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK 377 (504)
Q Consensus 299 ~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK 377 (504)
. ..+...|+.+... .......+...+..+ ...++++||||=|+-... ..+|...+++.+...|.
T Consensus 78 ~-----------~~~~~~~l~~~~~~~~~~~~~~~~i~~~~-~~~~~~LVViDpL~~~~~---~dENd~~~m~~~i~~l~ 142 (239)
T cd01125 78 I-----------DSGRIQPISIAREGRIIVVPEFERIIEQL-LIRRIDLVVIDPLVSFHG---VSENDNGAMDAVIKALR 142 (239)
T ss_pred E-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCEEEECCCHHHCC---CCCCCHHHHHHHHHHHH
T ss_conf 4-----------15566644133577210148999999997-458998999838177489---99788999999999999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99988279199977138220168999984010143242233138788972556616442333322211100000011233
Q gi|254780332|r 378 ALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRV 457 (504)
Q Consensus 378 ~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (504)
.||.+++|.|+++...+....... ......|+|.+|=-.|-.+..|.+-.- ++... ..-.....
T Consensus 143 ~ia~~tg~aVl~vHHt~K~~~~~~---~~~~a~RGaSaLvd~aR~~~~l~~m~~----~ea~~---------~gi~~~~~ 206 (239)
T cd01125 143 RIAAQTGAAILLVHHVRKGSAKDG---DTQEAARGASALVDGARWVRALTRMTS----EEAEK---------MGVGKAQP 206 (239)
T ss_pred HHHHHCCCEEEEEECCCCCCCCCC---HHHHCCCCHHHHHHHHHHHHHHHCCCH----HHHHH---------CCCCHHCC
T ss_conf 999971999999706887678871---044346648774323547667737999----99998---------29980106
Q ss_pred CCEEEEEEEECCCCCC
Q ss_conf 8838999974089972
Q gi|254780332|r 458 KGIADIIIAKQRHGPT 473 (504)
Q Consensus 458 ~~~~elivaKnR~G~~ 473 (504)
.....+.+.|.-+++.
T Consensus 207 ~~~~r~~~~k~n~~~~ 222 (239)
T cd01125 207 GLFFRFGVSKKNNAAA 222 (239)
T ss_pred CCEEEECCCCCCCCCC
T ss_conf 8769963431026999
No 48
>PRK09354 recA recombinase A; Provisional
Probab=99.25 E-value=4e-09 Score=88.93 Aligned_cols=226 Identities=19% Similarity=0.266 Sum_probs=136.3
Q ss_pred CCCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 3664432101377655--64167726776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 198 RLAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 198 ~~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
.+.-||||--.||-.+ ||+.+|.++-|.|.++.|||+||++++.++-+ .|..++|+-.|..-.
T Consensus 37 ~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk---------------~Gg~~a~iDaE~ald 101 (350)
T PRK09354 37 DVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQK---------------AGGTAAFIDAEHALD 101 (350)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEECCCCC
T ss_conf 76654477178999875899678708999889877799999999999997---------------599479996000279
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 99878999987410110001213768899899999998627807825899889999998864022444746776713532
Q gi|254780332|r 276 QLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 276 el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
-- +.. .-||+..+ |++. .|+ +.++....+..+.+...+|+||||-+--+
T Consensus 102 ~~---~a~-~lGVd~d~-------------------------llv~-qpd-~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL 150 (350)
T PRK09354 102 PV---YAK-KLGVDIDN-------------------------LLVS-QPD-TGEQALEIADALVRSGAVDLIVVDSVAAL 150 (350)
T ss_pred HH---HHH-HCCCCHHH-------------------------EEEE-CCC-HHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 88---999-84977157-------------------------1785-686-79999999999985488418998253345
Q ss_pred CCCCC----CCCH----HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 56644----3211----378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 356 TTSKK----IEEN----RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~~~~----~~~~----r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+... .++. ...-.+.-.|.|..+....+|++|.+.|+--.+-.- -..|... -+.-++--.|.+-|=+-
T Consensus 151 ~pk~Eieg~mgd~~vG~qARlmSqalRKlt~~i~ks~t~~IfINQlR~kiGvm-fG~petT--~GG~ALkFyaSvRl~ir 227 (350)
T PRK09354 151 VPKAEIEGEMGDSHVGLQARLMSQALRKLTGNINKSNTTVIFINQIRMKIGVM-FGNPETT--TGGNALKFYASVRLDIR 227 (350)
T ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCC-CCCCCCC--CCCCCCCCCEEEEEEEC
T ss_conf 76888731335422638999999999999999855782899974323214660-6898777--76330012122888412
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE---EEEEEEECCCCCEEEC
Q ss_conf 55661644233332221110000001123388389999740899725---9999974685402007
Q gi|254780332|r 428 RDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG---TVTLAFQAEFTRFSAL 490 (504)
Q Consensus 428 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g---~~~~~f~~~~~~f~~~ 490 (504)
|-+. .. .......+.+.+-|.|||-+|.. .+.+.|..-..+..++
T Consensus 228 r~~~-------iK-----------~g~~~iG~~ikvkvvKNK~apPfk~ae~dI~yg~GI~~~~el 275 (350)
T PRK09354 228 RIGT-------IK-----------DGDEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGEL 275 (350)
T ss_pred CCCC-------CC-----------CCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHH
T ss_conf 3563-------13-----------588358889999998568689975699998717766725479
No 49
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.22 E-value=2.6e-09 Score=90.32 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=131.6
Q ss_pred HHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 77655-64167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 209 LDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 209 LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
||+++ ||..+|-.+=|-|.||.|||.+|+..|.+++. +|+.|+|+-.|
T Consensus 1 iD~LLgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~---------------~Gk~v~YiDTE---------------- 49 (223)
T TIGR02237 1 IDELLGGGVERGIITQIYGPPGSGKTNICLILAVNAAR---------------QGKKVVYIDTE---------------- 49 (223)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECC----------------
T ss_conf 95220585120358898758998678999999999986---------------18958999628----------------
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHH---HHHHHCCEEEECCCCCCHH-HHHHHHHHHCCCC--CCCEEEECCHH-HCCCCCC
Q ss_conf 10110001213768899899999---9986278078258998899-9999886402244--47467767135-3256644
Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACS---QVMQKLPLYIDQTGGISMS-QLATRARRLKRQR--GLDLLIVDYIQ-LMTTSKK 360 (504)
Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~---~~l~~~~l~I~d~~~~ti~-~I~~~~r~~~~~~--gi~~vvIDYLq-li~~~~~ 360 (504)
|-||.+-..++..+. -+....++.|++..+++=. .+..+...+..++ ..+|||||-+. +-+....
T Consensus 50 --------GGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~ 121 (223)
T TIGR02237 50 --------GGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVAIQKTSKLIDRDGDKADLVVVDSFTALYRLERS 121 (223)
T ss_pred --------CCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCC
T ss_conf --------983289999986305889888841535523535678999999999998606883314888153345420257
Q ss_pred CCCHHHH-HHHHHHHH---HHHHHHHHCCCEEEEEECCCCCCC--CCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCC
Q ss_conf 3211378-89999999---999998827919997713822016--89999840101432422331387889725566164
Q gi|254780332|r 361 IEENRVL-EITGITMA---LKALAKELNIPIIALSQLSRQVEN--RDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIR 434 (504)
Q Consensus 361 ~~~~r~~-~i~~is~~---lK~lA~e~~ipvi~lsQLnR~~e~--r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~ 434 (504)
...|..+ ...+..++ |-.||+..|+|||..-|+--.+.+ ++.-+|. +.-.++.-.=+|+=|.|- +
T Consensus 122 ~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVviTNQvy~d~~~gG~~~~~P~-----GG~~L~h~~K~i~rLE~~---~- 192 (223)
T TIGR02237 122 DDRNKQISLNRELARQLTLLLSLARKKDLAVVITNQVYTDVNNGGSETLRPL-----GGHLLEHWSKVILRLEKL---N- 192 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEC-----CCHHHHHHHCEEEEEECC---C-
T ss_conf 8602567999999999999999987649978997115886377973201003-----311343110213356447---8-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE-EEEE
Q ss_conf 4233332221110000001123388389999740899725-9999
Q gi|254780332|r 435 NKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG-TVTL 478 (504)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g-~~~~ 478 (504)
. .|.=-.++.|||+-+-| .|.+
T Consensus 193 --r--------------------~G~R~a~L~kHR~~~EG~~v~F 215 (223)
T TIGR02237 193 --R--------------------VGRRKATLEKHRSRKEGESVKF 215 (223)
T ss_pred --C--------------------CCCEEEEEEECCCCCCCCEEEE
T ss_conf --9--------------------8742456654055789975789
No 50
>PTZ00035 Rad51; Provisional
Probab=99.17 E-value=3.1e-09 Score=89.76 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=118.7
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
+.-|+||=+.||+++ ||+..|.++=|.|-+|.|||.|++++|.++-.. ....... ..|+|+-.|-+=.
T Consensus 109 ~~~itTGs~~LD~LLGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP--------~~~GG~~-GkvvYIDTEgtFr-- 177 (350)
T PTZ00035 109 LIKFTTGSKQLDRLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLP--------IEQSGGE-GKCLWIDTEGTFR-- 177 (350)
T ss_pred CEEECCCCHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCC--------HHHCCCC-CCEEEEECCCCCC--
T ss_conf 6035758578887627894138587897279897899999999990485--------7777988-6279996889987--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCC-CCHHHHHHHHHHHCCCCCCCEEEECCHHH-C
Q ss_conf 878999987410110001213768899899999998627807825899-88999999886402244474677671353-2
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGG-ISMSQLATRARRLKRQRGLDLLIVDYIQL-M 355 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~-~ti~~I~~~~r~~~~~~gi~~vvIDYLql-i 355 (504)
.+|+..+.... .++.++ .+. ++++...-+ -...++...+..+..+.++.+||||-+-- -
T Consensus 178 peRi~qIA~~~--------gld~~~---------vL~--nI~~ara~n~ehq~~ll~~~~~~~~e~~vrLlIVDSitalF 238 (350)
T PTZ00035 178 PERIVAIAKRY--------GLHPTD---------CLN--NIAYAKAYNCDHQTELLIDASAMMADARFALLIVDSATALY 238 (350)
T ss_pred HHHHHHHHHHC--------CCCHHH---------HHH--HEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 89999999870--------999799---------853--32232206878899999999998511675899854456676
Q ss_pred CCCC--C-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 5664--4-321137889999999999998827919997713822016-----8999984010143242233138788972
Q gi|254780332|r 356 TTSK--K-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN-----RDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~~~--~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~-----r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+..- + .-..|++.++...+.|+.||.++|++||+.-|+--.++. -+.++|...+ .+...+-.-++|.
T Consensus 239 R~ef~GRgeLa~RQq~L~~~l~~L~~lA~~~nvAVvvTNQV~a~pd~~~~f~g~~~kPiGG~-----i~aHasttRl~Lr 313 (350)
T PTZ00035 239 RSEYIGRGELATRQSHLCRFLRGLQRIADIYGVAVIITNQVVAKVDAMSMFGGHEKIPIGGN-----IIAHASQTRLYLR 313 (350)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCCCCCCCCCCCE-----EEEEHHEEEEEEE
T ss_conf 65405701489999999999999999999809569992761666775433578877676441-----0422003889998
No 51
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.12 E-value=7.4e-08 Score=79.28 Aligned_cols=214 Identities=23% Similarity=0.281 Sum_probs=129.9
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
+..|+||-..||+++ ||+..|..+=|.|.+|+|||+++++++.++.. .|..|+|+..|=+
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~---------------~g~~a~fIDtE~~---- 99 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK---------------PGGKAAFIDTEHA---- 99 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEECCCC----
T ss_conf 660165505578774688655358998468876546689999888653---------------7980899958999----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCC--CCCEEEECCHHHC
Q ss_conf 87899998741011000121376889989999999862780782589988999999886402244--4746776713532
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQR--GLDLLIVDYIQLM 355 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~--gi~~vvIDYLqli 355 (504)
|.++....+.... -.++++.... +..+-...+..+.+.. .+++||||-+-=.
T Consensus 100 --------------------l~p~r~~~l~~~~----~d~l~v~~~~--~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 100 --------------------LDPERAKQLGVDL----LDNLLVSQPD--TGEQQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred --------------------CCHHHHHHHHHHH----HCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf --------------------8999999988754----2153686689--7799999999998754688788998257434
Q ss_pred CCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 5664----43211378899999999999988279199977138220168--99998401014324223313878897255
Q gi|254780332|r 356 TTSK----KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 356 ~~~~----~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
-... .....+.+.++.-.+.|..+|.++|++||..-|+--....- +-.+|. +.-....-|-+.+.+-|-
T Consensus 154 ~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~-----GG~~L~~~as~rl~l~k~ 228 (279)
T COG0468 154 VRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTT-----GGNALKFYASVRLDLRRI 228 (279)
T ss_pred CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCC-----CCHHHHHHHHEEEEEEEC
T ss_conf 636554853489999999999999999999749589997840340676668866587-----723887553247776522
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE-EEE--EEEECC
Q ss_conf 661644233332221110000001123388389999740899725-999--997468
Q gi|254780332|r 430 EYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG-TVT--LAFQAE 483 (504)
Q Consensus 430 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g-~~~--~~f~~~ 483 (504)
+ ... .. ..+..-+.|.||++-|.+ .+. ..|.+-
T Consensus 229 ~-------~~~-------------~~-~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~ 264 (279)
T COG0468 229 E-------SLK-------------ED-VGNKRRVKVVKNKVAPPFKEAEFDITYGGG 264 (279)
T ss_pred C-------CCC-------------CC-CCCEEEEEEEECCCCCCCCEEEEEEECCCC
T ss_conf 4-------432-------------35-687389999747989987656899650764
No 52
>KOG1564 consensus
Probab=98.82 E-value=2e-07 Score=75.96 Aligned_cols=174 Identities=18% Similarity=0.306 Sum_probs=110.5
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
+.||=..||+.+ ||+--+.++=|.|+.|.|||.|++|+++-+-. +.....-|+.++|++.|-+-. ..|
T Consensus 84 lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQL---------p~~~GGL~~~~vYI~TE~~fP--~rR 152 (351)
T KOG1564 84 LTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQL---------PRSHGGLGGGAVYICTESPFP--TRR 152 (351)
T ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHC---------CHHHCCCCCCEEEEECCCCCC--HHH
T ss_conf 104558888874499334548888602577588999999988608---------551089777439997688874--778
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCC-CHHHHHHH-HHHHCCCCCCCEEEECCHHHC-CC
Q ss_conf 9999874101100012137688998999999986278078258998-89999998-864022444746776713532-56
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGI-SMSQLATR-ARRLKRQRGLDLLIVDYIQLM-TT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~-ti~~I~~~-~r~~~~~~gi~~vvIDYLqli-~~ 357 (504)
+.-...-.|-. + ..+.+-+.. .. -...+|+..++++ +..+|... +-.+-.++++++||||-+--. +.
T Consensus 153 L~qL~~~~~~r----p---~~~~~~~~~--~N-pgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~ 222 (351)
T KOG1564 153 LHQLSHTLPQR----P---NPEKELNYN--DN-PGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRS 222 (351)
T ss_pred HHHHHHHCCCC----C---CCCHHHHHC--CC-CCCEEEEEECCCHHHHHHHHHHHCCCEECCCCCEEEEEEHHHHHHHH
T ss_conf 99999855047----9---943443421--69-77647987335335689988664231011573008997120577787
Q ss_pred C----CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6----44321137889999999999998827919997713822
Q gi|254780332|r 358 S----KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQ 396 (504)
Q Consensus 358 ~----~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~ 396 (504)
. ......|......++.+|+.||-.++++||+.-|..-.
T Consensus 223 E~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~ 265 (351)
T KOG1564 223 EFDYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDR 265 (351)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7325722325678899999999999887528628984111445
No 53
>PRK09519 recA recombinase A; Reviewed
Probab=98.80 E-value=1.6e-06 Score=69.11 Aligned_cols=179 Identities=20% Similarity=0.317 Sum_probs=113.1
Q ss_pred CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
+.-||||--.||-.+ ||+.+|.++=|.|..+.|||++|++++.++-+ .|..++|+-.|..-.-
T Consensus 38 v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK---------------~GG~aAfIDAEhAlDp 102 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDP 102 (790)
T ss_pred CCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCH
T ss_conf 5445046167888761688466049998789776589999999999985---------------3997999952002599
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
.. +..-||+..++. +. .|+ +-++....+..+.+...+|+||||-+-=+.
T Consensus 103 ~y----A~~LGVdld~LL-------------------------is-QPd-tGEqALeIae~LIrSgavDlIVVDSVAALv 151 (790)
T PRK09519 103 DY----AKKLGVDTDSLL-------------------------VS-QPD-TGEQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred HH----HHHHCCCHHHCE-------------------------EE-CCC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99----998395767806-------------------------85-798-088999999999854895489980534568
Q ss_pred CCC----CCCCH----HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------CCCCCCCC--CC----CCCCCCCH
Q ss_conf 664----43211----378899999999999988279199977138220-------16899998--40----10143242
Q gi|254780332|r 357 TSK----KIEEN----RVLEITGITMALKALAKELNIPIIALSQLSRQV-------ENRDNKRP--QL----SDLRESGS 415 (504)
Q Consensus 357 ~~~----~~~~~----r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~-------e~r~~krP--~l----sDLr~Sg~ 415 (504)
+.. ..+++ ...-++.-.|+|..+....++++|.+.||--.. |...++|- -. =|+|-.++
T Consensus 152 PKaEieGemgD~~vGlQARLMSqALRKLT~~I~ks~t~vIFINQlReKIGVMFGnPETT~GGrALKFYASVRldiRr~~~ 231 (790)
T PRK09519 152 PRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVET 231 (790)
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 78886164566428899999999999998776307749999421045405703799878886421222125775554120
Q ss_pred HHHHCCEE
Q ss_conf 23313878
Q gi|254780332|r 416 IEQDADVV 423 (504)
Q Consensus 416 IEqdAD~v 423 (504)
|.+-.|+|
T Consensus 232 IK~G~~~i 239 (790)
T PRK09519 232 LKDGTNAV 239 (790)
T ss_pred CCCCCCCC
T ss_conf 02677220
No 54
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.2e-06 Score=70.08 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41677267762131002769999999999851011123333321247975899958521799987899998741011000
Q gi|254780332|r 215 GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIR 294 (504)
Q Consensus 215 Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~ 294 (504)
-|+.|-.++|+|..|.|||++++.+..++|.-..+-- .+...-..|+|.|||..++++..|+-....+.
T Consensus 85 ~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG-----~~v~epGkvlyvslEl~re~~L~Rl~~v~a~m------ 153 (402)
T COG3598 85 FFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFG-----NKVKEPGKVLYVSLELYREDILERLEPVRARM------ 153 (402)
T ss_pred HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHC------
T ss_conf 7651705898448862376899999999986477745-----33558880799982268688999999999870------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHHHHHHHHHH---CCCCCCCEEEECCHHHCCCCCCCCCHHHHHHH
Q ss_conf 121376889989999999862780782589-98899999988640---22444746776713532566443211378899
Q gi|254780332|r 295 RGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQLATRARRL---KRQRGLDLLIVDYIQLMTTSKKIEENRVLEIT 370 (504)
Q Consensus 295 ~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~~~~r~~---~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~ 370 (504)
.|++.+..++.. ..++.. .+.. .+.+ ...||+ ..+..+++||||-.--.- .++ ++...++.
T Consensus 154 --gLsPadvrn~dl--td~~Ga----a~~~d~l~p----kl~rRfek~~~Q~rp~~vViDp~v~f~-~G~--s~s~vqv~ 218 (402)
T COG3598 154 --GLSPADVRNMDL--TDVSGA----ADESDVLSP----KLYRRFEKILEQKRPDFVVIDPFVAFY-EGK--SISDVQVK 218 (402)
T ss_pred --CCCHHHHHHEEC--CCCCCC----CCCCCCCCH----HHHHHHHHHHHHHCCCEEEECCHHHHC-CCC--CCHHHHHH
T ss_conf --998576322000--024567----872001058----999999999987478749973445422-774--11168999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 99999999998827919997713822016
Q gi|254780332|r 371 GITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 371 ~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
+..++++.+|.+++|.||.++.-+.+...
T Consensus 219 ~fi~~~rkla~~l~caIiy~hHtskss~~ 247 (402)
T COG3598 219 EFIKKTRKLARNLECAIIYIHHTSKSSGK 247 (402)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 99999999998627739999445656677
No 55
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.70 E-value=6.3e-07 Score=72.22 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=133.7
Q ss_pred CCCCCHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 4321013776556-416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQMG-GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~g-Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
+++|=..||+.+| |..-|.|++|-|.-|-|||.|++++++.... +|++|.|+|.||+..+....
T Consensus 10 i~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~---------------~g~~v~yvsTe~T~refi~q 74 (235)
T COG2874 10 IKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLM---------------NGYRVTYVSTELTVREFIKQ 74 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECHHHHHHHHH
T ss_conf 067847778651699746769999888985488999999998870---------------89548999840359999998
Q ss_pred HHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHCCEEEECCCCC-CHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 9999874101100012137--688998999999986278078258998-8999999886402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELT--RPDYEKIVACSQVMQKLPLYIDQTGGI-SMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~--~~e~~~i~~a~~~l~~~~l~I~d~~~~-ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
+-|.--.|.-. +.+|.+- +-.. .|+.....+.- .++.+...+ +.+.-++++||-|..+..
T Consensus 75 m~sl~ydv~~~-~l~G~l~~~~~~~------------~~~~~~~~~~~~~L~~l~~~~----k~~~~dViIIDSls~~~~ 137 (235)
T COG2874 75 MESLSYDVSDF-LLSGRLLFFPVNL------------EPVNWGRRSARKLLDLLLEFI----KRWEKDVIIIDSLSAFAT 137 (235)
T ss_pred HHHCCCCCHHH-HHCCEEEEEEECC------------CCCCCCHHHHHHHHHHHHHHH----HHHCCCEEEEECCCHHHH
T ss_conf 88638871687-7506268999324------------542257377899999997557----752377899953437765
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCC
Q ss_conf 64432113788999999999999882791999771--3822016899998401014324223313878897255661644
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQ--LSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRN 435 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ--LnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~ 435 (504)
.. ..++|-++...+|.|+-+-.+-|+.+.| |++.+ -.-|.+.||+.+.|+-.+.=+.
T Consensus 138 ~~-----~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~---------------~~rirs~~d~~l~L~~~~~Gg~- 196 (235)
T COG2874 138 YD-----SEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDV---------------LTRIRSACDVYLRLRLEELGGD- 196 (235)
T ss_pred CC-----CHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHH---------------HHHHHHHHHEEEEEEHHHHCCE-
T ss_conf 26-----49999999999999872897899994734337899---------------9999875202589870231784-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CE-EEEEEEECCCC
Q ss_conf 2333322211100000011233883899997408997--25-99999746854
Q gi|254780332|r 436 KEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGP--TG-TVTLAFQAEFT 485 (504)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~--~g-~~~~~f~~~~~ 485 (504)
.++. +-|.|=|.+. .| .+.+.-+|.++
T Consensus 197 ---------------------~~~~--~~i~K~~ga~~s~~~~I~F~V~P~~G 226 (235)
T COG2874 197 ---------------------LIKV--LEIVKYRGARKSFQNIISFRVEPGFG 226 (235)
T ss_pred ---------------------EEEE--EEEEEECCCHHHCCCCEEEEECCCCC
T ss_conf ---------------------5587--78766547133217740588559875
No 56
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.40 E-value=4.3e-06 Score=65.88 Aligned_cols=183 Identities=19% Similarity=0.265 Sum_probs=110.7
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510-11123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY-KAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~-~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
+.-|+||.+.||+++ ||+.---.+=|.|-=|+|||.++-++|.|+=... -.............|-.|+|+-.|=+=.
T Consensus 75 v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEnTFR- 153 (333)
T TIGR02236 75 VGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFR- 153 (333)
T ss_pred CCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCC-
T ss_conf 7504448636765607960000588877100786578766765532287112101100014776787689985597986-
Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCEEEEC--CCC---CCHHHHHHHHHHHCC-CCCCCEEEE
Q ss_conf 98789999874101100012-13768899899999998627807825--899---889999998864022-444746776
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRG-ELTRPDYEKIVACSQVMQKLPLYIDQ--TGG---ISMSQLATRARRLKR-QRGLDLLIV 349 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d--~~~---~ti~~I~~~~r~~~~-~~gi~~vvI 349 (504)
-+|+.-+.-|.....+..+ .|+.+|. | .++|+=- .++ +=++.+...+...+. .++|.||||
T Consensus 154 -PERI~qmA~GL~~g~l~~~melD~~ev---------L--~nI~vARAyNS~HQmllve~~~~li~e~~~~~~pv~L~~V 221 (333)
T TIGR02236 154 -PERIEQMAKGLARGTLQAAMELDPDEV---------L--KNIYVARAYNSNHQMLLVEKAKELIKELKNEDKPVRLLIV 221 (333)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCHHHH---------H--CCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf -257999998631113666532787777---------2--0304778526314799999999999730157994689998
Q ss_pred CCHHH-CCC--CCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 71353-256--644-3211378899999999999988279199977138
Q gi|254780332|r 350 DYIQL-MTT--SKK-IEENRVLEITGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 350 DYLql-i~~--~~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
|-|-= -+. .++ .--.|+|.+..=...|..||--|||+||+.-|..
T Consensus 222 DSLtsHFRaEY~GRg~LA~RQQKLnkHlh~L~~ladlyn~aV~VTNQV~ 270 (333)
T TIGR02236 222 DSLTSHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVM 270 (333)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 1210022367645024788986987889988654140217899855612
No 57
>KOG1433 consensus
Probab=98.19 E-value=0.00012 Score=54.86 Aligned_cols=167 Identities=24% Similarity=0.319 Sum_probs=88.0
Q ss_pred CCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 3664432101377655-641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 198 RLAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 198 ~~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
...-+.||...||+++ ||+.-|.++.|-|+|++|||+|.++++..+- .-+..|+|+-.|=. .+
T Consensus 89 ~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~---------------gge~~~l~IDs~s~-~~ 152 (326)
T KOG1433 89 ELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCG---------------GGEGKVLYIDTEST-FR 152 (326)
T ss_pred CCEEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---------------CCCCEEEEEECCHH-CC
T ss_conf 762541550556677426755583568855898447788889988706---------------87511899952111-03
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH-HC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135-32
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ-LM 355 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq-li 355 (504)
..|..+.....-....+ -..++.-+... + .+. +...+.... -+..+....++++|.-. +.
T Consensus 153 -~~~~~~ia~~~~~~~~~-------~~~~l~~~~~~----~---~~~---~l~~~~~a~-~~~~~~~~~l~~vds~ta~~ 213 (326)
T KOG1433 153 -LERLTEIAGRSGLRGRD-------TLSNLMLARAY----N---LDH---QLQLIQEAE-IMINQSRVKLLIVDSATALY 213 (326)
T ss_pred -CCHHHHHHHHHHHHHHH-------HHHHHHHHHHH----H---HHH---HHHHHHHHH-HHHHCCCEEEEEECCCCCCC
T ss_conf -32113566663030677-------88888999998----5---666---777799999-98620311699941345411
Q ss_pred CCCCCCCCH---HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 566443211---37889999999999998827919997713822016
Q gi|254780332|r 356 TTSKKIEEN---RVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 356 ~~~~~~~~~---r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
....+...+ |..-.+.-.+.||.+|.+++++||.-.|+.+...+
T Consensus 214 ~~~~~g~~~~~a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~~d~ 260 (326)
T KOG1433 214 RTTFKGRGELSARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQVDG 260 (326)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 33106652157889999999999988888618617986220234566
No 58
>KOG1434 consensus
Probab=98.01 E-value=3.9e-06 Score=66.18 Aligned_cols=192 Identities=20% Similarity=0.264 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 77899999874112366443210137765564-16772677621310027699999999998510111233333212479
Q gi|254780332|r 184 VAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGG-LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING 262 (504)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG-l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g 262 (504)
.+++..+++. .+.-|.||-..||.++|| ..--..+=|.|-|++|||.+..+++.++-. | .....-|
T Consensus 83 tA~e~le~r~----~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~Ql----P-----r~~Gg~~ 149 (335)
T KOG1434 83 TALELLEQRK----TVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQL----P-----REMGGVG 149 (335)
T ss_pred HHHHHHHHHH----CCCEEECCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEC----C-----HHHCCCC
T ss_conf 1999986650----2454632567776562488531026877078776701023589997656----4-----3218877
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 7589995852179998789999874101100012137-688998999999986278078258998899999988640224
Q gi|254780332|r 263 GIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT-RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQ 341 (504)
Q Consensus 263 ~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~-~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~ 341 (504)
..+.|+-.|=+=. ..|+....-++ ++. +.-++++. |.--..+--..++...+-.+-.+
T Consensus 150 Gk~ifIDTEgtFr--pdRi~~IAe~~--------~~d~d~~LdNI~-----------y~Ra~~se~qmelv~~L~~~~se 208 (335)
T KOG1434 150 GKAIFIDTEGTFR--PDRIKDIAERF--------KVDPDFTLDNIL-----------YFRAYNSEEQMELVYLLGDFLSE 208 (335)
T ss_pred CEEEEEECCCCCC--HHHHHHHHHHH--------CCCHHHHHHHHH-----------HHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 4289992588614--58999999874--------889889887778-----------87772869999999998888744
Q ss_pred CC-CCEEEECCHHHC-C--CCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCCCCCCCC
Q ss_conf 44-746776713532-5--6644-321137889999999999998827919997713822016-----8999984010
Q gi|254780332|r 342 RG-LDLLIVDYIQLM-T--TSKK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN-----RDNKRPQLSD 409 (504)
Q Consensus 342 ~g-i~~vvIDYLqli-~--~~~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~-----r~~krP~lsD 409 (504)
+| ..+||||-+--. + .+++ .-..|++.+.....+|-.||+|+++.|+++-|+.-.... -.++.|.+.|
T Consensus 209 ~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh 286 (335)
T KOG1434 209 HGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGH 286 (335)
T ss_pred CCCEEEEEEECEEHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 485799998000003021456643088999999999999999987522799984111148763322233444754441
No 59
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=97.80 E-value=0.0019 Score=45.63 Aligned_cols=214 Identities=22% Similarity=0.370 Sum_probs=125.6
Q ss_pred CCCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 3664432101377655--64167726776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 198 RLAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 198 ~~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
.+.-|+||--.||-.+ ||+.+|.++=|-|.-|.|||||++++..++=+ .|..+.|+--|-.-+
T Consensus 32 ~v~~i~tGsl~LD~AlG~GG~P~GRi~EiYGpESsGKTTLal~~iA~~Qk---------------~Gg~~afiDAEHAlD 96 (322)
T TIGR02012 32 DVEVISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHVIAEAQK---------------AGGVAAFIDAEHALD 96 (322)
T ss_pred CEEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECHHHCC
T ss_conf 10021253013435516798987507998548988478999999999974---------------398389984513037
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 99878999987410110001213768899899999998627807825899889999998864022444746776713532
Q gi|254780332|r 276 QLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 276 el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
.. -|..-||+... |+|.. |+ +=++--..+..+.+...+|+||||-+-=+
T Consensus 97 ~~----YA~~LGv~~~~-------------------------L~~sQ-Pd-~GE~ALeI~~~L~rSgAvD~iVvDSVAAL 145 (322)
T TIGR02012 97 PV----YAKKLGVDIDN-------------------------LLVSQ-PD-TGEQALEIAETLVRSGAVDIIVVDSVAAL 145 (322)
T ss_pred HH----HHHHHCCCHHH-------------------------HEEEC-CC-CCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 78----89983645247-------------------------11208-88-71469999999872376117997340013
Q ss_pred CCCCCCCCH-HHHHHH----HHHHHHHHH---HHHHCCCEEEEEECCCCC-------CCCCCCCCC------CCCCCCCC
Q ss_conf 566443211-378899----999999999---988279199977138220-------168999984------01014324
Q gi|254780332|r 356 TTSKKIEEN-RVLEIT----GITMALKAL---AKELNIPIIALSQLSRQV-------ENRDNKRPQ------LSDLRESG 414 (504)
Q Consensus 356 ~~~~~~~~~-r~~~i~----~is~~lK~l---A~e~~ipvi~lsQLnR~~-------e~r~~krP~------lsDLr~Sg 414 (504)
.|...-... -...++ -+|+.|+.| -...++.+|-+-|+-... |..++++-. -=|+|-.+
T Consensus 146 ~P~aEieGemgd~~~Gl~ARLMS~ALRKl~g~~~k~~t~~iFiNQ~R~KiGv~fG~peTTtGG~ALKFYas~Rldirr~~ 225 (322)
T TIGR02012 146 VPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTLIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIG 225 (322)
T ss_pred CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87123175435442325788899999988876532052376400222232211178888776414233443344431146
Q ss_pred HHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC---EEEEEEEECCCCCEEEC
Q ss_conf 22331387889725566164423333222111000000112338838999974089972---59999974685402007
Q gi|254780332|r 415 SIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPT---GTVTLAFQAEFTRFSAL 490 (504)
Q Consensus 415 ~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~---g~~~~~f~~~~~~f~~~ 490 (504)
.|.+.- .....+.+.+-|.||.=.|. ..+.+.|..-..+..++
T Consensus 226 ~~K~g~---------------------------------~~~~G~~~~vkv~KNKvApPF~~aefdi~yg~Gi~~~g~~ 271 (322)
T TIGR02012 226 SVKEGE---------------------------------NEAVGNRVKVKVVKNKVAPPFREAEFDILYGEGISKLGEI 271 (322)
T ss_pred HHHCCC---------------------------------HHHCCCEEEEEEEEECCCCCHHHHHEEEEECCCHHHHHHH
T ss_conf 541540---------------------------------0101433578987506798521300102211140233456
No 60
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00048 Score=50.23 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-EEEEEECCCCH--HHHHHHHHHHHHHHCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797-58999585217--9998789999874101100
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGG-IVGFYSLEMSS--EQLATRIISEQTEVPSSKI 293 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~-~Vl~fSlEMs~--~el~~R~is~~s~I~~~~i 293 (504)
..+.++.+.|.||+|||+..--+|.+.+.. .|+ +|.++|+.=-+ -.-..|..+.+.|||+..+
T Consensus 208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~--------------~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~ 273 (412)
T PRK05703 208 EQGGVVALVGPTGVGKTTTLAKLAARYALE--------------EGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVA 273 (412)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 567369998888875676999999999997--------------299817999837677779999999999719737984
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 0121376889989999999862780782589988
Q gi|254780332|r 294 RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGIS 327 (504)
Q Consensus 294 ~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~t 327 (504)
.++ + .+..+..++.+..+.+-|+++.+
T Consensus 274 ~~~----~---~l~~al~~~~~~dlILIDTaG~s 300 (412)
T PRK05703 274 YDP----K---ELAKALEQLANCDLILIDTAGRS 300 (412)
T ss_pred CCH----H---HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 799----9---99999987158997999689889
No 61
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.69 E-value=0.002 Score=45.51 Aligned_cols=90 Identities=24% Similarity=0.399 Sum_probs=57.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121376
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
++.+.|.||+|||+..--+|..... +|++|.+++..= .|.-+
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~---------------~~~kV~lit~Dt------~R~gA----------------- 43 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK---------------KGKKVLLVAADT------YRPAA----------------- 43 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCC------CCHHH-----------------
T ss_conf 9999899999889999999999997---------------699289997488------75779-----------------
Q ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCH
Q ss_conf 8899899999998627807825899889999998864022444746776713
Q gi|254780332|r 301 PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 301 ~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYL 352 (504)
.+++....+. -+.|++..+.+. .+.++........+..+.|+|+||--
T Consensus 44 --~eQL~~~a~~-l~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~IlIDTa 91 (173)
T cd03115 44 --IEQLRVLGEQ-VGVPVFEEGEGK-DPVSIAKRAIEHAREENFDVVIVDTA 91 (173)
T ss_pred --HHHHHHHHHH-CCCEEEECCCCC-CHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf --9999999997-498599227755-87999999999987568998999788
No 62
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.0062 Score=41.78 Aligned_cols=145 Identities=23% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797589995852--1799987899998741011000
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM--SSEQLATRIISEQTEVPSSKIR 294 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM--s~~el~~R~is~~s~I~~~~i~ 294 (504)
+|-..+.++|=-|.||||.+--+|...-+ +|+.|+..++.- ++-.=..|.++...+||.....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk---------------~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK---------------KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 99858999815679748689999999997---------------499458985056786899999999986098531677
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC--CEEEECCCC-CCHH-HHHHHHHHHCCCCCCC--EEEECCHHHCCCCCCCCCHHHHH
Q ss_conf 1213768899899999998627--807825899-8899-9999886402244474--67767135325664432113788
Q gi|254780332|r 295 RGELTRPDYEKIVACSQVMQKL--PLYIDQTGG-ISMS-QLATRARRLKRQRGLD--LLIVDYIQLMTTSKKIEENRVLE 368 (504)
Q Consensus 295 ~g~l~~~e~~~i~~a~~~l~~~--~l~I~d~~~-~ti~-~I~~~~r~~~~~~gi~--~vvIDYLqli~~~~~~~~~r~~~ 368 (504)
. .-++-+ -..++.+..++. .+.|.||++ +.++ ++...++.++..-.++ +.|||-. .+ |.
T Consensus 163 ~-~~~Pv~--Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam--------~G----Qd 227 (451)
T COG0541 163 T-EKDPVE--IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM--------IG----QD 227 (451)
T ss_pred C-CCCHHH--HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC--------CC----HH
T ss_conf 8-899799--999999999974998899968873303099999999998553987489987644--------45----67
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999999988279199977138
Q gi|254780332|r 369 ITGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 369 i~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
.... -|.+-..+++.-|.|+-+-
T Consensus 228 A~~~---A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 228 AVNT---AKAFNEALGITGVILTKLD 250 (451)
T ss_pred HHHH---HHHHHHHCCCCEEEEECCC
T ss_conf 8999---9998662698649997146
No 63
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.64 E-value=0.00043 Score=50.61 Aligned_cols=125 Identities=26% Similarity=0.303 Sum_probs=69.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
++..++|.|.||.|||+++..+|.+... .+..|.+++.+...........
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~---------------~~~~v~~~~~~~~~~~~~~~~~--------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP---------------PGGGVIYIDGEDILEEVLDQLL--------------- 50 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCC---------------CCCCEEEEEHHHHHHHHHHHHH---------------
T ss_conf 9978999999970299999999987266---------------8996899875998988898765---------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 37688998999999986278078258998899999988640224447467767135325664432113788999999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK 377 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK 377 (504)
................+. .+..+.++...++++||-++.+....... ............
T Consensus 51 -----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~viiiDei~~~~~~~~~~---~~~~~~~~~~~~ 109 (148)
T smart00382 51 -----------------LIIVGGKKASGSGELRLR-LALALARKLKPDVLILDEITSLLDAEQEA---LLLLLEELRLLL 109 (148)
T ss_pred -----------------HHHHCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEEECCHHHCCCCCHH---HHHHHHHHHHHC
T ss_conf -----------------300011221051999999-99999984499899982750214762079---999999999851
Q ss_pred HHHHHHCCCEEEEEEC
Q ss_conf 9998827919997713
Q gi|254780332|r 378 ALAKELNIPIIALSQL 393 (504)
Q Consensus 378 ~lA~e~~ipvi~lsQL 393 (504)
......++.||+.++.
T Consensus 110 ~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 110 LLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCCCEEEEEEECC
T ss_conf 7657899899995699
No 64
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.0013 Score=46.98 Aligned_cols=174 Identities=17% Similarity=0.261 Sum_probs=89.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH---HHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585217---9998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS---EQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~---~el~~R~is~ 284 (504)
.|+++.--+.+|+.+.|-|+.|+||||++--++- ... .+...|.+.-.+++. .++..+ ++.
T Consensus 22 aL~~isl~i~~GE~vaivG~nGsGKSTL~k~l~G-l~~--------------p~~G~I~i~G~~i~~~~~~~lr~~-ig~ 85 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-LLL--------------PEAGTITVGGMVLSEETVWDVRKQ-IGM 85 (279)
T ss_pred EEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--------------CCCCEEEECCEECCCCCHHHHHHH-EEE
T ss_conf 5763076887998999999999659999999972-888--------------889649999999985787999743-668
Q ss_pred HHHHC-----C----CCC----CCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCEE
Q ss_conf 87410-----1----100----012137688-9989999999862780782589-988999--99988640224447467
Q gi|254780332|r 285 QTEVP-----S----SKI----RRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDLL 347 (504)
Q Consensus 285 ~s~I~-----~----~~i----~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~v 347 (504)
..+=| . ..+ ++..++..+ .+++.++...+. +.=+.+..| .+|=.+ -.+.+|.+. ..++++
T Consensus 86 VfQ~P~~~l~~~tV~e~iafgl~~~g~~~~e~~~rv~~~l~~~g-l~~~~~~~p~~LSGGQrQRvaIAraL~--~~P~iL 162 (279)
T PRK13635 86 VFQNPDNQFVGTTVQDDVAFGLENIGVPREEMVERVDQALRQVG-MEDFLNREPHRLSGGQKQRVAIAGVLA--LQPDIL 162 (279)
T ss_pred EECCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEE
T ss_conf 82185652576268999988998779999999999999998779-978861793439999999999999997--099989
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.| .+.. .-+.. .-.+|...|+.|.++.++.||..++ ||- .+.+ ||-|+.|+
T Consensus 163 ilD-----EPTs-~LD~~--~~~~i~~~l~~L~~~~g~TvI~itH----------------dl~---~~~~-aDRiivm~ 214 (279)
T PRK13635 163 ILD-----EATS-MLDPQ--GRREVLETVRQLKEQKGITVLSITH----------------DLD---EAAQ-ADRVIVMN 214 (279)
T ss_pred EEC-----CCCC-CCCHH--HHHHHHHHHHHHHHCCCCEEEEEEE----------------CHH---HHHC-CCEEEEEE
T ss_conf 973-----8745-48989--9999999999999837989999976----------------789---9963-99899998
Q ss_pred C
Q ss_conf 5
Q gi|254780332|r 428 R 428 (504)
Q Consensus 428 R 428 (504)
.
T Consensus 215 ~ 215 (279)
T PRK13635 215 K 215 (279)
T ss_pred C
T ss_conf 9
No 65
>PRK06526 transposase; Provisional
Probab=97.58 E-value=0.0015 Score=46.44 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=34.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 16772677621310027699999999998510111233333212479758999585
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
+..++=+|+-|.||.|||.+|..++..++. +|++|.|+++.
T Consensus 95 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~---------------~G~~v~f~~~~ 135 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQ---------------AGHRVLFATAA 135 (254)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEHH
T ss_conf 765887899899998689999999999998---------------69967998779
No 66
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.56 E-value=0.011 Score=39.76 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=59.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC--
Q ss_conf 677621310027699999999998510111233333212479758999585217999878999987410110001213--
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGEL-- 298 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l-- 298 (504)
=+||||.|++|||+|.-.+-.. ...........+|..|++|-.- +...+-|-++-+
T Consensus 170 TivVaG~PNVGKSSlv~~lT~A-------kpEvA~YPFTTK~i~vGhfe~~---------------~~R~QvIDTPGlLD 227 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTA-------KPEVAPYPFTTKGIHVGHFERG---------------YLRIQVIDTPGLLD 227 (346)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-------CCCCCCCCCCCCCEEEEEEECC---------------CCEEEEECCCCCCC
T ss_conf 3898569987589999887548-------9766788853365467655048---------------70589842886457
Q ss_pred -CHHHHHHHH----HHHHHHHHCCEEEECC---CCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf -768899899----9999986278078258---99889999998864022444746776
Q gi|254780332|r 299 -TRPDYEKIV----ACSQVMQKLPLYIDQT---GGISMSQLATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 299 -~~~e~~~i~----~a~~~l~~~~l~I~d~---~~~ti~~I~~~~r~~~~~~gi~~vvI 349 (504)
.-+|+..+. -|...+.+.=||+.|. ++.++++-....+..+..++..+|+|
T Consensus 228 RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V 286 (346)
T COG1084 228 RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVV 286 (346)
T ss_pred CCHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88577368999999999974285899976850028999999999999998538876999
No 67
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.56 E-value=0.00093 Score=48.07 Aligned_cols=87 Identities=22% Similarity=0.366 Sum_probs=52.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
.+.++.+.|.||+|||+...-+|.+.+.. ..+++|.++|+.= .|+-|
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~-------------~~~~~V~lIT~Dt------yRigA-------------- 239 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE-------------HGKKKVALITTDT------YRIGA-------------- 239 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH-------------CCCCCEEEEEECC------CCHHH--------------
T ss_conf 67279997788875788999999999997-------------3899679998077------76789--------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 37688998999999986278078258998899999988640224447467767
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvID 350 (504)
++++.... ++-+.|+++.. +..++...+.++. +.|+|+||
T Consensus 240 -----~eQLk~ya-~il~vp~~vv~----~~~~l~~~l~~~~---~~d~IlID 279 (282)
T TIGR03499 240 -----VEQLKTYA-KILGVPVKVAR----DPKELAKALERLR---DKDLILID 279 (282)
T ss_pred -----HHHHHHHH-HHHCCEEEEEC----CHHHHHHHHHHCC---CCCEEEEE
T ss_conf -----99999999-99597489939----9999999998657---98999981
No 68
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.53 E-value=0.0012 Score=47.23 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=86.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH-----HHHHHHH------
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999-----8789999------
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL-----ATRIISE------ 284 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el-----~~R~is~------ 284 (504)
+.|||++|+.|++|+||||+..=|.. -+ .. |-..+-+|--|...-.- ..|-+..
T Consensus 28 i~~GEiViltGPSGSGKTTLLtLiG~--LR------------~~-Q~G~L~vlg~~L~ga~~~~l~~~RR~iGyIFQ~HN 92 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGG--LR------------SV-QEGSLKVLGQELKGASKKELVQVRRNIGYIFQAHN 92 (220)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHH--HC------------CC-CCCEEEEECCHHCCCCHHHHHHHHHHCCCEECCCH
T ss_conf 71764798437889846889998876--25------------65-55604782201026788899999876391441200
Q ss_pred -------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--EEEECCC-CCCHH--HHHHHHHHHCCCCCCCEEEECCH
Q ss_conf -------874101100012137688998999999986278--0782589-98899--99998864022444746776713
Q gi|254780332|r 285 -------QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLP--LYIDQTG-GISMS--QLATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 285 -------~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~--l~I~d~~-~~ti~--~I~~~~r~~~~~~gi~~vvIDYL 352 (504)
.-+|-+.-=...+++.. +....|...|...- =+++..| ++|=. |=.|.+|.++ +.|++|.=|
T Consensus 93 Ll~~LTA~QNVqM~~eL~~~~~~~--~~~~~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARALv--~~P~LvLAD-- 166 (220)
T TIGR02982 93 LLGFLTARQNVQMALELQPNLSAQ--EAREKARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARALV--ARPKLVLAD-- 166 (220)
T ss_pred HCHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHH--CCCCEEECC--
T ss_conf 010001778886489887611688--99999999998606012554052436786168999999973--389767625--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 5325664432113788999999999999882791999771382
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSR 395 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR 395 (504)
.|...=..+.-. +|..=++.+|+|=+|.|+.+..=||
T Consensus 167 ---EPTAALD~~SGr---~VV~Lm~~lA~eqGc~iL~VTHD~R 203 (220)
T TIGR02982 167 ---EPTAALDSKSGR---DVVELMQKLAREQGCTILLVTHDNR 203 (220)
T ss_pred ---CCCHHHHHCCCH---HHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf ---772332211338---9999999988771988999836731
No 69
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=97.52 E-value=0.0011 Score=47.54 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 65430134336778999998741123664-432101377655-6416772677621310027699999999998510111
Q gi|254780332|r 173 GGFHTFSDAMTVAIDMAGQAFNRDGRLAG-VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAE 250 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~ 250 (504)
..+.++...+.++.+.+++. .| =|++ +.+.= .=+-+|+-.-|-|+||+|||+|.+-+++-.|.+
T Consensus 61 K~~~~~~~~~k~f~~FF~~~-------~G~~pws---~Qk~WAKRv~~~~SFai~APTGVGKttFG~~mslflA~k---- 126 (1843)
T TIGR01054 61 KEYCSLDEELKEFEEFFKKA-------VGSEPWS---IQKSWAKRVLKGDSFAIVAPTGVGKTTFGLVMSLFLAKK---- 126 (1843)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HCCCCHH---HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH----
T ss_conf 55433789999999999997-------1888435---679999996417964898058876779999999998654----
Q ss_pred CCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHHH--HHCCCC---CCCCCCCHHHHHHHHHHHHHHHHC--CEEEEC
Q ss_conf 233333212479758-999585217999878999987--410110---001213768899899999998627--807825
Q gi|254780332|r 251 LQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQT--EVPSSK---IRRGELTRPDYEKIVACSQVMQKL--PLYIDQ 322 (504)
Q Consensus 251 ~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~s--~I~~~~---i~~g~l~~~e~~~i~~a~~~l~~~--~l~I~d 322 (504)
+|++| .+|-.+.=..|.+.|+-+..- |+...+ ...++|...+.+.+ .+++.+. .+-|
T Consensus 127 ----------KGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS~L~~~~kke~---~Eri~~GDfdili-- 191 (1843)
T TIGR01054 127 ----------KGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHSKLSTKEKKEV---KERIENGDFDILI-- 191 (1843)
T ss_pred ----------CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHH---HHHHHCCCEEEEH--
T ss_conf ----------2987899947078899999998752002575000022210112654567889---9987318917861--
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCEEEECCHH-HCCCC
Q ss_conf 8998899999988640224447467767135-32566
Q gi|254780332|r 323 TGGISMSQLATRARRLKRQRGLDLLIVDYIQ-LMTTS 358 (504)
Q Consensus 323 ~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq-li~~~ 358 (504)
+ |-.=+.-..+.+.-++.-++||||=+. +++.+
T Consensus 192 t---T~~FL~K~~~~L~~~y~F~liFVDDVDa~Lk~s 225 (1843)
T TIGR01054 192 T---TSMFLSKNFDKLKNQYKFDLIFVDDVDALLKAS 225 (1843)
T ss_pred H---HHHHHHHHHHHCCCCCEEEEEEEECHHHHHHCC
T ss_conf 2---246888766517898514489971536763165
No 70
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.51 E-value=0.0057 Score=42.07 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 677621310027699999999998510111233333212479758999585
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
++.+.|.+|+|||+....+|..... +|++|+++|..
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~---------------~~~~V~lit~D 38 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKK---------------QGKKVLLVAAD 38 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECC
T ss_conf 9999899999889999999999997---------------79928999758
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=97.49 E-value=0.0026 Score=44.64 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=63.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHH--HHHCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758-99958521799987899998--7410110
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQ--TEVPSSK 292 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~--s~I~~~~ 292 (504)
+-.|+-..+-|+||||||+|.+-++.-.|+. |+++ ++|-..-=..|...|+.... ++++..-
T Consensus 90 ~~~g~SFaiiAPTG~GKTtfgl~~sly~a~k---------------gkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~ 154 (1176)
T PRK09401 90 LLLGESFAIIAPTGVGKTTFGLVMALYLAKK---------------GKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKVRL 154 (1176)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 8668974898889988889999999999865---------------9839999688899999999999999970998408
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH
Q ss_conf 0-012137688998999999986278078258998899999988640224447467767135
Q gi|254780332|r 293 I-RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 293 i-~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq 353 (504)
+ ..+.++..+.+.+.+.+.. .+..+.|. |-.-+ .+=...-.+.+.|+||||-+.
T Consensus 155 ~~y~~~~~~~~kee~~~~~~~-gdfdIlit-----T~~fl-~kn~~~l~~~~f~fifvDDVD 209 (1176)
T PRK09401 155 LYYHSSLKKKEKEEFLERLEE-GDFDILVT-----TSQFL-SKNFDELPKDRFDFVFVDDVD 209 (1176)
T ss_pred EEEECCCCHHHHHHHHHHHHC-CCCCEEEE-----EHHHH-HHHHHHCCCCCCCEEEEECHH
T ss_conf 998567766678999988655-99868998-----56767-654876035688889993418
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=97.49 E-value=0.0037 Score=43.54 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------EEEEEECCCCHHH
Q ss_conf 3210137765564167726776213100276999999999985101112333332124797------5899958521799
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGG------IVGFYSLEMSSEQ 276 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~------~Vl~fSlEMs~~e 276 (504)
|+|=..|.++===++||||++|=|++|-|||||.-.+=. +.. -....+. .|.+---|-+...
T Consensus 12 ~~g~~~LK~inl~i~~GE~~~~IG~SGAGKSTLLR~iNr----------L~~--Gdk~~~Geilidf~i~~~g~~i~~~~ 79 (253)
T TIGR02315 12 PNGKQALKNINLEINPGEFVAVIGPSGAGKSTLLRCINR----------LVE--GDKPSSGEILIDFSILLEGTDITKLR 79 (253)
T ss_pred CCCCEEEEEECCEEECCEEEEEECCCCCCHHHHHHHHHH----------HCC--CCCCCCCEEEEEEEEEECCCHHHHHH
T ss_conf 798378853114341651799973788726799987753----------026--88887650898888887273187675
Q ss_pred HHHHHHHHHHH----------HC-----------------CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH
Q ss_conf 98789999874----------10-----------------1100012137688998999999986278078258998899
Q gi|254780332|r 277 LATRIISEQTE----------VP-----------------SSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS 329 (504)
Q Consensus 277 l~~R~is~~s~----------I~-----------------~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~ 329 (504)
=...+-....+ |+ .++-.-|.++++|.++-..+.++ ..| .|....-.+
T Consensus 80 ~~k~LR~~R~~igMIFQ~yNLi~R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~r---VGl--~~~A~~RaD 154 (253)
T TIGR02315 80 RGKKLRKLRRKIGMIFQHYNLIERLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLER---VGL--ADKAYQRAD 154 (253)
T ss_pred HHHHHHHHHHHHCCEEHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHH---CCH--HHHHHHHHH
T ss_conf 488999997643501101023783036676421432145034556325899899999987652---387--889865213
Q ss_pred -------HHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE-EEECC
Q ss_conf -------999988640224447467767135325664432113788999999999999882791999-77138
Q gi|254780332|r 330 -------QLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIA-LSQLS 394 (504)
Q Consensus 330 -------~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~-lsQLn 394 (504)
|=.+.||.+.++ +++|..| .|- .+-+.... ..|+.-||.+.+|.++.||+ |.|+.
T Consensus 155 ~LSGGQQQRVaIARAL~Q~--P~lILAD-----EPi-ASLDP~~s--~~VMd~lk~In~e~GIT~i~NLH~Vd 217 (253)
T TIGR02315 155 QLSGGQQQRVAIARALAQQ--PKLILAD-----EPI-ASLDPKTS--KQVMDYLKRINKEDGITVIVNLHQVD 217 (253)
T ss_pred HHCCCCHHHHHHHHHHCCC--CCEEEEC-----CCC-CCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 2158511689999863689--9589704-----884-33675678--99999999988776977999746178
No 73
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.0014 Score=46.78 Aligned_cols=137 Identities=15% Similarity=0.292 Sum_probs=85.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------CCCCCCCEE---EEEECCC--
Q ss_conf 16772677621310027699999999998510111233333------------------212479758---9995852--
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS------------------YKTINGGIV---GFYSLEM-- 272 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~------------------~~~~~g~~V---l~fSlEM-- 272 (504)
+..|+++|+-|.+|+|||+|.--|| ..-........+... .++..--+| +-|.|.|
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IA-GLe~p~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhMtV~~Niaf~Lk~~~ 104 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIA-GLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7479799998999888899999996-887788715999999999899557888999378301578769997341664479
Q ss_pred -CHHHHHHHHHHHHHHHCCCCCC--CC-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHHHHHHHHCCCCC
Q ss_conf -1799987899998741011000--12-137688998999999986278078258998899-----99998864022444
Q gi|254780332|r 273 -SSEQLATRIISEQTEVPSSKIR--RG-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLATRARRLKRQRG 343 (504)
Q Consensus 273 -s~~el~~R~is~~s~I~~~~i~--~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~~~~r~~~~~~g 343 (504)
++.++..|.--..--.....+. .+ .|+-.+..++.-+..-..+-.++.-|.|--+++ ++|..+++++++.|
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDaklR~~mr~eik~l~~~l~ 184 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG 184 (338)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 95688899999999873986677359011772567899998777547887884476467659999999999999998609
Q ss_pred CCEEEECCHH
Q ss_conf 7467767135
Q gi|254780332|r 344 LDLLIVDYIQ 353 (504)
Q Consensus 344 i~~vvIDYLq 353 (504)
..+|.|=|=|
T Consensus 185 ~T~IYVTHDq 194 (338)
T COG3839 185 TTTIYVTHDQ 194 (338)
T ss_pred CCEEEECCCH
T ss_conf 8489980899
No 74
>PRK02362 ski2-like helicase; Provisional
Probab=97.48 E-value=0.004 Score=43.27 Aligned_cols=13 Identities=0% Similarity=0.125 Sum_probs=4.8
Q ss_pred HHHHHHHHHHCCE
Q ss_conf 9999999862780
Q gi|254780332|r 306 IVACSQVMQKLPL 318 (504)
Q Consensus 306 i~~a~~~l~~~~l 318 (504)
+..+.+.|.+..|
T Consensus 467 i~~~l~~L~~~~~ 479 (736)
T PRK02362 467 VDDVLEFLRRNGM 479 (736)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999997869
No 75
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0029 Score=44.37 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC------CCHHHHHH
Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585------21799987
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE------MSSEQLAT 279 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE------Ms~~el~~ 279 (504)
+..||++---+++|+.+.|-|+.|+|||++.--++ ...........+...........+.|.--+ |+..|...
T Consensus 17 ~~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~-Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~ 95 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA-GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf 99996718898799899999999957999999997-59998873899999967888988799924885377887999998
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 89999874101100012137688-9989999999862780782589-988999--9998864022444746776713532
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
+. ++...++..+ .+++.++.+.+. +.=+.+..| .+|=.+ =.+.+|.+. +.+++++.|
T Consensus 96 ----------~~-l~~~~~~~~~~~~~v~~~l~~~g-L~~~~~~~p~~LSGGqkQRvaiARaL~--~~P~llllD----- 156 (220)
T cd03293 96 ----------LG-LELQGVPKAEARERAEELLELVG-LSGFENAYPHQLSGGMRQRVALARALA--VDPDVLLLD----- 156 (220)
T ss_pred ----------HH-HHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----
T ss_conf ----------89-98659998999999999999878-954761893129999999999999986--699999980-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+... -+. ..-..|...|+.+.++.+..||..+. | -..+..-||-|++|+
T Consensus 157 EPts~-LD~--~~~~~i~~~l~~l~~~~g~tii~vTH----------------d---l~~a~~laDri~vm~ 206 (220)
T cd03293 157 EPFSA-LDA--LTREQLQEELLDIWRETGKTVLLVTH----------------D---IDEAVFLADRVVVLS 206 (220)
T ss_pred CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEE
T ss_conf 88765-699--99999999999999851999999888----------------8---999999699999985
No 76
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=97.46 E-value=0.003 Score=44.24 Aligned_cols=219 Identities=20% Similarity=0.271 Sum_probs=128.0
Q ss_pred CCCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 23664432101377655-64167726776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 197 GRLAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 197 ~~~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
..+.-|.||-..||.++ ||...--.+=+-|-=-+|||.++-.++.-+= .| .........|.|+-.|=+=.
T Consensus 73 ~~V~~i~TGs~~~d~~LGGGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQ----LP-----~~~~g~~GKv~yIDTEgTFR 143 (314)
T TIGR02238 73 KKVLKISTGSKALDKILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQ----LP-----REMGGGEGKVAYIDTEGTFR 143 (314)
T ss_pred CEEEEEECCHHHHHHHCCCCEEEEEHEECCCCCCCCHHHHHHHHHHHHH----CC-----CCCCCCCCEEEEEECCCCCC
T ss_conf 2467762315887434078700000000004556771465556655320----63-----12579984289981788858
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-----CC-CHHHHHHHHHHHHHHHHC---CEEEECCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 998789999874101100012-----13-768899899999998627---807825899889999998864022444746
Q gi|254780332|r 276 QLATRIISEQTEVPSSKIRRG-----EL-TRPDYEKIVACSQVMQKL---PLYIDQTGGISMSQLATRARRLKRQRGLDL 346 (504)
Q Consensus 276 el~~R~is~~s~I~~~~i~~g-----~l-~~~e~~~i~~a~~~l~~~---~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~ 346 (504)
==--+-+|-.-+++....... -+ ++++++-+.....++.+- .|.|.| .|. -+
T Consensus 144 Pdri~~IAerf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivD-------SI~------------al 204 (314)
T TIGR02238 144 PDRIKAIAERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVD-------SIM------------AL 204 (314)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEH-------HHH------------HH
T ss_conf 17899887540789889998889887504278999999998875226871688642-------025------------54
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 77671353256644321137889999999999998827919997713822016-----8999984010143242233138
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN-----RDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~-----r~~krP~lsDLr~Sg~IEqdAD 421 (504)
.=|||-+ -+ .-..|+|.+......|..||.|+||.|++.-|+.-..-. -..++|. .|-|=-.|-
T Consensus 205 FRVDfsG----RG-ELseRQQKL~~~l~~L~~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~------GGHvlaHAs 273 (314)
T TIGR02238 205 FRVDFSG----RG-ELSERQQKLAQMLSRLNKLSEEFNVAVFVTNQVQADPGATMTFIADPKKPI------GGHVLAHAS 273 (314)
T ss_pred HCCCCCC----CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCC------CCHHHHHHH
T ss_conf 1312125----76-402788999999999876546640232001122008873000000788871------502577789
Q ss_pred EEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE-EEEEEEECC
Q ss_conf 78897255661644233332221110000001123388389999740899725-999997468
Q gi|254780332|r 422 VVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG-TVTLAFQAE 483 (504)
Q Consensus 422 ~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g-~~~~~f~~~ 483 (504)
.+=++. .+|..|-.|||=...|-- +..+.|.-.
T Consensus 274 ~~R~~l-----------------------------RKGrg~~RvaK~~DsP~~pE~E~~f~i~ 307 (314)
T TIGR02238 274 ATRLLL-----------------------------RKGRGDERVAKLYDSPDLPEAEASFQIT 307 (314)
T ss_pred HHHHHH-----------------------------HCCCCCCCEEEECCCCCCCCCCCEEEEC
T ss_conf 988864-----------------------------1588655167301688772214146764
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0022 Score=45.21 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH----------
Q ss_conf 1013776556416772677621310027699999999998510111233333212479758999585217----------
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS---------- 274 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~---------- 274 (504)
..+.|+++.--+.+|+.+.|-|+.|.||||++-.++- .... +...|.+.-.+++.
T Consensus 19 ~~~aL~~isl~i~~GE~v~iiG~nGsGKSTLl~~l~G-Ll~p--------------~~G~V~i~G~~i~~~~~~~~~~r~ 83 (287)
T PRK13637 19 EKKALDNVNIEIEDGEFVALIGHTGSGKSTLIQHLNG-LLKP--------------TSGKIIIDGVDITDKKVKLSDIRK 83 (287)
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCCCHHHHHH
T ss_conf 3817532076987998999999999399999999973-9988--------------872699999998788867788874
Q ss_pred ----------HHHHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCE--EEECCC-CCCHHHH--HHHHHHH
Q ss_conf ----------99987899998741011000121376889-989999999862780--782589-9889999--9988640
Q gi|254780332|r 275 ----------EQLATRIISEQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPL--YIDQTG-GISMSQL--ATRARRL 338 (504)
Q Consensus 275 ----------~el~~R~is~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l--~I~d~~-~~ti~~I--~~~~r~~ 338 (504)
.++....+ ...|.+. .++-.++.++. +++.++.+.+ ++.. +-+-.| .+|=.+- .+.+|.+
T Consensus 84 ~iG~VfQ~P~~~l~~~tV--~e~i~fg-~~~~g~~~~e~~~rv~~~l~~v-gL~~~~~~~~~p~~LSGGqkQRvaiA~aL 159 (287)
T PRK13637 84 KVGLVFQYPEYQLFEETI--EKDIAFG-PINLGLSEEEIENRVKEAMNIV-GLDYEVYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred CEEEEEECCCCCCCCCCH--HHHHHHH-HHHCCCCHHHHHHHHHHHHHHC-CCCHHHHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 178996175202370309--9999868-9886999999999999999766-99848870689112998899999999999
Q ss_pred CCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 22444746776713532566443211378899999999999988279199977138220168999984010143242233
Q gi|254780332|r 339 KRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ 418 (504)
Q Consensus 339 ~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq 418 (504)
. ..+++++.| .+... -+ .....+|...||.|.++.++.||..+. +-..+.+
T Consensus 160 ~--~~P~iLllD-----EPTs~-LD--p~~~~~i~~~l~~L~~e~g~Tvi~vTH-------------------dl~~v~~ 210 (287)
T PRK13637 160 A--MEPKVLILD-----EPTAG-LD--PKGRDDILEKIKALHKEYNMTIILVSH-------------------SMEDVAK 210 (287)
T ss_pred H--CCCCEEEEE-----CCCCC-CC--HHHHHHHHHHHHHHHHHCCCEEEEECC-------------------CHHHHHH
T ss_conf 8--399999983-----88664-89--999999999999999850989999957-------------------9999999
Q ss_pred HCCEEEEEEC
Q ss_conf 1387889725
Q gi|254780332|r 419 DADVVLFVIR 428 (504)
Q Consensus 419 dAD~v~~l~R 428 (504)
-||-|++|+.
T Consensus 211 ~aDRvivl~~ 220 (287)
T PRK13637 211 IADRIIVMNK 220 (287)
T ss_pred HCCEEEEEEC
T ss_conf 6999999989
No 78
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0032 Score=43.94 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=75.1
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6416772677621310027699999999998510111233333212479758-999585217999878999987410110
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQTEVPSSK 292 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~s~I~~~~ 292 (504)
.-+-+|+-.-|-|+||+|||+|.+-++.-.|.+ |++| .+|-..-=..|...|+-...-.....+
T Consensus 92 kR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k---------------gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 92 KRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK---------------GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 998737844898278876547999999998755---------------87499996678999999999999886537852
Q ss_pred C---CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH-HCCCC
Q ss_conf 0---012137688998999999986278078258998899999988640224447467767135-32566
Q gi|254780332|r 293 I---RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ-LMTTS 358 (504)
Q Consensus 293 i---~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq-li~~~ 358 (504)
+ ..+.|+..+.+ ++.+.+.+..+-|-=+ |..-+......+.+ ++.|+||||-.. +++++
T Consensus 157 ~~~~yh~~l~~~eke---e~le~i~~gdfdIlit---Ts~FL~k~~e~L~~-~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 157 VLVVYHSALPTKEKE---EALERIESGDFDILIT---TSQFLSKRFEELSK-LKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred EEEEECCCCCHHHHH---HHHHHHHCCCCCEEEE---EHHHHHHHHHHHCC-CCCCEEEECCHHHHHHCC
T ss_conf 466531236657799---9999986599639997---47878866998404-577789980478898634
No 79
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00058 Score=49.64 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=87.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH--HHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998--7899998
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA--TRIISEQ 285 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~--~R~is~~ 285 (504)
.|+.+.--+.+|+.+.|-|..|+|||||+..++--. .... .....|.+...+.....+. .+-++..
T Consensus 23 aL~~vsl~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll-~P~~-----------~~~G~i~~~g~~i~~~~~~~lr~~vg~V 90 (283)
T PRK13640 23 ALKDVSFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDD-----------NPKSKITVDGITLTAKTVWDIREKVGIV 90 (283)
T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCC-----------CCEEEEEECCEECCCCCHHHHHHCEEEE
T ss_conf 787718699899999999999987999999996403-7888-----------8617999999999967988996261899
Q ss_pred --------------HHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCEE
Q ss_conf --------------741011000121376889-989999999862780782589-988999--99988640224447467
Q gi|254780332|r 286 --------------TEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDLL 347 (504)
Q Consensus 286 --------------s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~v 347 (504)
-.|.+. +++-.++.++. +++.++.+.+.=.. +.+..| .+|=.+ -.+.+|.+. ..++++
T Consensus 91 fQ~P~~q~~~~tV~e~iafg-l~n~~~~~~e~~~~v~~~l~~vgl~~-~~~~~p~~LSGGqkQRvaiA~aLa--~~P~iL 166 (283)
T PRK13640 91 FQNPDNQFVGATVGDDVAFG-LENRGVPRPEMIKIVADVLSDVGMLD-YIDSEPANLSGGQKQRVAIAGILA--VEPQII 166 (283)
T ss_pred EECCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCHH-HHHCCHHHCCHHHHHHHHHHHHHH--CCCCEE
T ss_conf 86887618878299999845-75379999999999999998779977-764792229999999999999997--199999
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.| .+.. .-+. ....+|..-++.+.++.++.||..++ |+. .++ .||-|+.++
T Consensus 167 llD-----EPTs-~LD~--~~~~~i~~~l~~l~~e~g~TvI~itH----------------d~~---~a~-~aDrv~vm~ 218 (283)
T PRK13640 167 ILD-----ESTS-MLDP--AGKEQILKLIRKLMKDNNLTIISITH----------------DID---EAA-GADQVLVLD 218 (283)
T ss_pred EEC-----CCCC-CCCH--HHHHHHHHHHHHHHHCCCCEEEEEEE----------------CHH---HHH-HCCEEEEEE
T ss_conf 976-----8745-4898--99999999999999706989999978----------------878---997-099899999
Q ss_pred C
Q ss_conf 5
Q gi|254780332|r 428 R 428 (504)
Q Consensus 428 R 428 (504)
.
T Consensus 219 ~ 219 (283)
T PRK13640 219 D 219 (283)
T ss_pred C
T ss_conf 9
No 80
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.006 Score=41.93 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 72677621310027699999999998510111233333212479758999585
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
+.++.+.|.||+|||+-.--+|...+..++ ..|.+|.+++..
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~-----------~k~~~V~lit~D 215 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSD-----------DKSLNIKIITID 215 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCC-----------CCCCCEEEEEEC
T ss_conf 628999899887578799999999998626-----------767737999807
No 81
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0073 Score=41.28 Aligned_cols=117 Identities=19% Similarity=0.323 Sum_probs=68.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
.+.++.+.|+||+|||+-.--+|.+.+. ..|+.|++++.. .-|+-|
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l--------------~~~kkVaLIT~D------TYRIgA-------------- 267 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFL--------------HMGKSVSLYTTD------NYRIAA-------------- 267 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--------------HCCCEEEEEECC------CCCHHH--------------
T ss_conf 7629999899998889999999999999--------------749927999526------653779--------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 37688998999999986278078258998899999988640224447467767135325664432113788999999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK 377 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK 377 (504)
.+++.... ++-+.|+++.. ++.+++..+ .+ ++.|+|+|| +.++...|. ..+ .+||
T Consensus 268 -----vEQLktYa-~Il~iPv~vv~----~~~el~~al---~~-~~~DlILID------TAGrS~rd~-~~~----~eL~ 322 (432)
T PRK12724 268 -----IEQLKRYA-DTMGMPFYPVK----DIKKFKETL---AR-DGSELILID------TAGYSHRNL-EQL----ERMQ 322 (432)
T ss_pred -----HHHHHHHH-HHHCCCEEEEE----CHHHHHHHH---HH-CCCCEEEEE------CCCCCCCCH-HHH----HHHH
T ss_conf -----99999999-98599459951----899999999---85-699999992------999897899-999----9999
Q ss_pred HHHHH----HCC-CEEEEEEC
Q ss_conf 99988----279-19997713
Q gi|254780332|r 378 ALAKE----LNI-PIIALSQL 393 (504)
Q Consensus 378 ~lA~e----~~i-pvi~lsQL 393 (504)
.+-.. ..+ ..++||=-
T Consensus 323 ~ll~~~~~~~~ie~~LVLSaT 343 (432)
T PRK12724 323 SFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred HHHHHHCCCCCCEEEEEEECC
T ss_conf 999863667885179999788
No 82
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0019 Score=45.74 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEEEEECCC---CHHHHHHHHHHHHHHHCCCC
Q ss_conf 6772677621310027699999999998510111233333212479-7589995852---17999878999987410110
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING-GIVGFYSLEM---SSEQLATRIISEQTEVPSSK 292 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g-~~Vl~fSlEM---s~~el~~R~is~~s~I~~~~ 292 (504)
..|-++.+.|.||+|||+..--+|.+++.. +| ++|.++|+.= .+.| ..|.-+.+.|||...
T Consensus 174 ~~ggV~alVGPTGVGKTTTiAKLAAr~~l~--------------~g~~kVaLIT~DTYRIgAvE-QLktYa~IlgvPv~v 238 (404)
T PRK06995 174 ERGGVFALVGPTGVGKTTTTAKLAARCVMR--------------HGASKVALLTTDSYRIGGHE-QLRIYGKILGVPVHA 238 (404)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHH--------------HCCCCEEEEECCCCCHHHHH-HHHHHHHHCCCEEEE
T ss_conf 147558986688876375899999999998--------------38983799976875478999-999999875955999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 00121376889989999999862780782589988999
Q gi|254780332|r 293 IRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ 330 (504)
Q Consensus 293 i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~ 330 (504)
..++ +.+..+..+++++.+.+-|+++.+..+
T Consensus 239 v~~~-------~eL~~aL~~l~~~dlILIDTaGrs~rD 269 (404)
T PRK06995 239 VKDA-------ADLRLALAELRNKHIVLIDTVGMSQRD 269 (404)
T ss_pred ECCH-------HHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 5999-------999999997089999998099989768
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.0032 Score=44.03 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----------CCCCEEEEEE----
Q ss_conf 21013776556416772677621310027699999999998510111233333212----------4797589995----
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT----------INGGIVGFYS---- 269 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~----------~~g~~Vl~fS---- 269 (504)
.|...|+.+---+.+|+++.|-|+.|+|||||.-.++ ..-............... ...-..+|-.
T Consensus 12 ~g~~~L~~isl~i~~Ge~~~iiGpsGsGKSTLl~~i~-gl~~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ~~~l~ 90 (241)
T cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLN-GLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEECCCCCCC
T ss_conf 7988997838899999899999999833999999997-499998559999999989899899999864918980799789
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCC--HHHHHHHHHHHCCCCCCCE
Q ss_conf 852179998789999874101100012137688998999999986278078258-9988--9999998864022444746
Q gi|254780332|r 270 LEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGIS--MSQLATRARRLKRQRGLDL 346 (504)
Q Consensus 270 lEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~t--i~~I~~~~r~~~~~~gi~~ 346 (504)
..|+..|... +......+..+-..+..+.++.+++.++.+.+.=.. +.+-. ..+| -.+=.+.+|.+. ..+++
T Consensus 91 ~~ltV~enV~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~-~~~~~~~~LSGGq~QRVaIARAL~--~~P~i 165 (241)
T cd03256 91 ERLSVLENVL--SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIARALM--QQPKL 165 (241)
T ss_pred CCCCHHHHHH--HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-HHHCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 9889999986--365413305577617995999999999999769977-876784414802899999999985--59998
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .|.+. -+... -.+|..-|+.+++|.++.||..+. |+ ..+.+-||-|++|
T Consensus 166 ll~D-----EPts~-LD~~~--~~~i~~ll~~l~~~~g~Tii~vtH----------------dl---~~a~~~adri~~l 218 (241)
T cd03256 166 ILAD-----EPVAS-LDPAS--SRQVMDLLKRINREEGITVIVSLH----------------QV---DLAREYADRIVGL 218 (241)
T ss_pred EEEC-----CCCCC-CCHHH--HHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEE
T ss_conf 9962-----87665-89999--999999999999851989999957----------------98---9999969989999
Q ss_pred EC
Q ss_conf 25
Q gi|254780332|r 427 IR 428 (504)
Q Consensus 427 ~R 428 (504)
+.
T Consensus 219 ~~ 220 (241)
T cd03256 219 KD 220 (241)
T ss_pred EC
T ss_conf 69
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0038 Score=43.42 Aligned_cols=145 Identities=16% Similarity=0.254 Sum_probs=85.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCEE--EE---------------
Q ss_conf 37765564167726776213100276999999999985101112333332---12479758--99---------------
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY---KTINGGIV--GF--------------- 267 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~---~~~~g~~V--l~--------------- 267 (504)
.||.+---+.+|+++.+-|.+|+|||++..-+| ..-............. ...+...+ +|
T Consensus 21 al~~vsl~i~~Ge~~~llGpSG~GKTTlLr~ia-Gl~~p~~G~I~~~g~~v~~~~~~~R~i~~VfQ~~aLfPh~tV~eNi 99 (351)
T PRK11432 21 VIDNLDLTIKQGTMVTLLGPSGCGKTTVLRLVA-GLEKPTSGQIFIDGEDVTKRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHH
T ss_conf 984457498899899999999649999999997-6999883699999999999995458869994488767668099999
Q ss_pred -EEC---CCCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHHHHH
Q ss_conf -958---5217999878999987410110001---2137688998999999986278078258998899-----999988
Q gi|254780332|r 268 -YSL---EMSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLATRA 335 (504)
Q Consensus 268 -fSl---EMs~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~~~~ 335 (504)
|.| -+++.++..|......-+.+..+.+ .+|+..+..++.-|..-..+-.+.+-|.|--.++ +++..+
T Consensus 100 ~~~l~~~~~~~~e~~~rv~e~l~~v~L~~~~~r~P~~LSGGq~QRValARAL~~~P~vlLlDEP~s~LD~~lR~~~~~~l 179 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALVLKPKVLLFDEPLSNLDANLRRSMREKI 179 (351)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 77998759999999999999997649966145895578998999999999984499899986875436999999999999
Q ss_pred HHHCCCCCCCEEEECCHH
Q ss_conf 640224447467767135
Q gi|254780332|r 336 RRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 336 r~~~~~~gi~~vvIDYLq 353 (504)
+++.++.|+-+|+|-|=|
T Consensus 180 ~~l~~~~~~T~i~VTHD~ 197 (351)
T PRK11432 180 RELQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHHHHHCCEEEEECCCH
T ss_conf 999998699999999998
No 85
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.39 E-value=0.0017 Score=46.13 Aligned_cols=159 Identities=21% Similarity=0.273 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH-H-
Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585---21799987-8-
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT-R- 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~-R- 280 (504)
++-|+++.--+++|+.+.|.|..|.|||+|. ++....... ....|.|+.-+ ++..+... |
T Consensus 23 ~~vL~~isl~i~~GE~v~ivG~sGsGKSTLl-~~i~Gl~~p--------------~~G~I~~~G~~~~~~~~~~~~~~r~ 87 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDG--------------SSGEVSLVGQPLHNMDEEARAKLRA 87 (228)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHH-HHHHCCCCC--------------CCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 9998473889999989999999985899999-999669999--------------9679999999999799889987630
Q ss_pred -HHHH-------------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCE--EEECCC-CCCHHH--HHHHHHHHCCC
Q ss_conf -9999-------------8741011000121376889989999999862780--782589-988999--99988640224
Q gi|254780332|r 281 -IISE-------------QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPL--YIDQTG-GISMSQ--LATRARRLKRQ 341 (504)
Q Consensus 281 -~is~-------------~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l--~I~d~~-~~ti~~--I~~~~r~~~~~ 341 (504)
-++. .-++.+....+|.-..+..++ +.+.+....| +.+..| .+|=.+ -.+.+|.+.
T Consensus 88 ~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~---~~~~l~~~gl~~~~~~~p~~LSGGq~QRv~iAraL~-- 162 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSAQSRNG---AKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN-- 162 (228)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 647798140224798702123346898808998999999---864554217344540887889979999999999987--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 447467767135325664432113788999999999999882791999771
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
..+++++.| .+... -+. ..-.+|..-|+.++++.++.||..++
T Consensus 163 ~~P~llllD-----EPT~~-LD~--~~~~~i~~~l~~l~~~~g~tii~vtH 205 (228)
T PRK10584 163 GRPDVLFAD-----EPTGN-LDR--QTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 599999984-----99767-899--99999999999999972989999886
No 86
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.0025 Score=44.84 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHH--HH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---179998--78
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLA--TR 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~--~R 280 (504)
...||.+---+.+|+.+.|-|.+|+|||+++..++- .-.. +...|.+.--++ +..++. .|
T Consensus 13 ~~~L~~isl~i~~Ge~~~iiG~SGsGKSTll~~i~g-L~~p--------------~~G~I~~~g~~i~~~~~~~~~~~r~ 77 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG-LLRP--------------DSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHHHHC
T ss_conf 988826064887998999999999729999999975-9998--------------9858999999999899889999757
Q ss_pred HHHH-------------HHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEE--EECCC-CCC--HHHHHHHHHHHCCC
Q ss_conf 9999-------------87410110001213768899-899999998627807--82589-988--99999988640224
Q gi|254780332|r 281 IISE-------------QTEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLY--IDQTG-GIS--MSQLATRARRLKRQ 341 (504)
Q Consensus 281 ~is~-------------~s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~--I~d~~-~~t--i~~I~~~~r~~~~~ 341 (504)
-++. .-+|...-...+.++.++.+ ++.+.. ....|. .+..| .+| ..+=.+.||.+.
T Consensus 78 ~ig~vfQ~~~Lf~~lTv~eNv~~~l~~~~~~~~~~~~~r~~~~L---~~vgL~~~~~~~p~~LSGGq~QRvaIARALv-- 152 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKL---EAVGLRGAEDLYPAELSGGMKKRVALARALA-- 152 (235)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHCCCCHHHHCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 82997049865899969999999999957999999999999999---8679925764784106999999999999985--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
+.+++++.| .|.+. -+. .--.+|..-++.|.+++++.+|..+. | -..+.+-||
T Consensus 153 ~~P~illlD-----EPts~-LDp--~~~~~i~~li~~l~~~~g~T~i~vTH----------------d---~~~a~~~~D 205 (235)
T cd03261 153 LDPELLLYD-----EPTAG-LDP--IASGVIDDLIRSLKKELGLTSIMVTH----------------D---LDTAFAIAD 205 (235)
T ss_pred CCCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCC
T ss_conf 489989980-----88664-798--99999999999999972999999898----------------9---899999699
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
-|++++.
T Consensus 206 ri~vm~~ 212 (235)
T cd03261 206 RIAVLYD 212 (235)
T ss_pred EEEEEEC
T ss_conf 8999989
No 87
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=97.38 E-value=0.0028 Score=44.44 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE-ECCCCHH
Q ss_conf 3664432101377655-6416772677621310027699999999998510111233333212479758999-5852179
Q gi|254780332|r 198 RLAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFY-SLEMSSE 275 (504)
Q Consensus 198 ~~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~f-SlEMs~~ 275 (504)
...+..||..+||+++ ||+..|..+++-=.+..||-++.+-++..++. .+.+|-.|++. +-||+..
T Consensus 236 ~ka~fstgi~dlD~IlsgG~~~GS~v~Ldlg~d~~~~~~~vl~l~ai~N------------fl~n~~~v~ivpp~~~sp~ 303 (484)
T pfam07088 236 DKAEFSTGIGDLDKILSGGTNRGSVVHLDLGKDLSRDAWSVLTLPAIRN------------FLSNEMGVAVVPPREGSPG 303 (484)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEHHHHHHH------------HHHCCCCEEEECCCCCCCH
T ss_conf 7540256888667761065466637999725787742023211287999------------9855783698565558821
Q ss_pred HHHHHH
Q ss_conf 998789
Q gi|254780332|r 276 QLATRI 281 (504)
Q Consensus 276 el~~R~ 281 (504)
.+-.-+
T Consensus 304 l~~ndl 309 (484)
T pfam07088 304 LLHNDL 309 (484)
T ss_pred HHCCCH
T ss_conf 202641
No 88
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.37 E-value=0.012 Score=39.57 Aligned_cols=148 Identities=20% Similarity=0.295 Sum_probs=103.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--CHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 726776213100276999999999985101112333332124797589995852--17999878999987410110-001
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM--SSEQLATRIISEQTEVPSSK-IRR 295 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM--s~~el~~R~is~~s~I~~~~-i~~ 295 (504)
-..|.+.|==|.||||++--+|...-+ .++|++||..++.. ++-.-....++...|||... ...
T Consensus 102 P~vilmvGLQGsGKTTt~gKLA~~ll~-------------kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~ 168 (439)
T TIGR00959 102 PTVILMVGLQGSGKTTTAGKLALYLLK-------------KKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGK 168 (439)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-------------HHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 838997313788578899999999999-------------8638970340321034789999999767528871100478
Q ss_pred CCCCHHHHHHHHHHHHHHHHC--CEEEECCC-CCCHHH-HHHHHHHHCCCCCCC--EEEECCHHHCCCCCCCCCHHHHHH
Q ss_conf 213768899899999998627--80782589-988999-999886402244474--677671353256644321137889
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKL--PLYIDQTG-GISMSQ-LATRARRLKRQRGLD--LLIVDYIQLMTTSKKIEENRVLEI 369 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~--~l~I~d~~-~~ti~~-I~~~~r~~~~~~gi~--~vvIDYLqli~~~~~~~~~r~~~i 369 (504)
+.-.++=.+-..+|....+.. -+.|.||. .+.|++ +...+..+|+.-.++ +.|||=+. + |++
T Consensus 169 ~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLlVvDaM~--------G----QdA 236 (439)
T TIGR00959 169 GQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILLVVDAMT--------G----QDA 236 (439)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCC--------H----HHH
T ss_conf 8898877899999999999748978997267512555999999999988868870541220102--------1----699
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999999988279199977138
Q gi|254780332|r 370 TGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 370 ~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
-. .-|.+=..+++--+.||-|=
T Consensus 237 vn---~A~~F~e~lgltG~vltK~D 258 (439)
T TIGR00959 237 VN---TAKTFNERLGLTGVVLTKLD 258 (439)
T ss_pred HH---HHHHHCCCCCCCEEEEECCC
T ss_conf 99---99863660013547885475
No 89
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00097 Score=47.92 Aligned_cols=173 Identities=18% Similarity=0.238 Sum_probs=90.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521---79998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS---SEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs---~~el~~R~is~ 284 (504)
.|+.+.--+.+|+.+.|-|+.|+|||||+.-++- .-. .....|.|.....+ ..++..+ ++.
T Consensus 24 ~L~~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~G-l~~--------------p~~G~I~~~g~~i~~~~~~~~~~~-ig~ 87 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-IEK--------------VKSGEIFYNNQAITDDNFEKLRKD-IGI 87 (269)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--------------CCCEEEEECCEECCCCCHHHHHHH-CEE
T ss_conf 5664589985998999999999979999999964-979--------------985099999999998898999750-269
Q ss_pred HH--------------HHCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCE
Q ss_conf 87--------------41011000121376-889989999999862780782589-988999--9998864022444746
Q gi|254780332|r 285 QT--------------EVPSSKIRRGELTR-PDYEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDL 346 (504)
Q Consensus 285 ~s--------------~I~~~~i~~g~l~~-~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~ 346 (504)
.. .+.+ .+.+..++. +.++++.++...+.=..+ .+..| .+|=.+ -.+.+|.+. ..+++
T Consensus 88 vfQ~p~~~~~~~tv~~~i~~-gl~~~~~~~~e~~~~v~~~L~~~~l~~~-~~~~p~~LSGGqkQRvaiAraL~--~~P~i 163 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAF-GLENHAVPYDEMHRRVSEALKQVDMLER-ADYEPNALSGGQKQRVAIASVLA--LNPSV 163 (269)
T ss_pred EEECHHHHCCCCHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHCCCHHH-HHCCCCCCCHHHHHHHHHHHHHH--HCCCE
T ss_conf 98871320472179999973-3644699999999999999987699134-41896438999999999999997--59899
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+.. .-+.. .-.+|..-|+.|..+.++.||..++ ||- .+.. ||.|++|
T Consensus 164 LilD-----EPTs-~LD~~--~~~~i~~ll~~L~~~~~~TvI~itH----------------dl~---~a~~-aDrvivl 215 (269)
T PRK13648 164 IILD-----EATS-MLDPD--ARQNLLDLVRKVKSEHNITIISITH----------------DLS---EAME-ADHVIVM 215 (269)
T ss_pred EEEC-----CCCC-CCCHH--HHHHHHHHHHHHHHCCCCEEEEEEE----------------CHH---HHHH-CCEEEEE
T ss_conf 9981-----8755-48999--9999999999999737989999976----------------789---9971-9989999
Q ss_pred EC
Q ss_conf 25
Q gi|254780332|r 427 IR 428 (504)
Q Consensus 427 ~R 428 (504)
+.
T Consensus 216 ~~ 217 (269)
T PRK13648 216 NK 217 (269)
T ss_pred EC
T ss_conf 89
No 90
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.0039 Score=43.34 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=78.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH---HH
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585---21799987---89
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT---RI 281 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~---R~ 281 (504)
.|+++---+++|+++.|.|..|.|||+|+--++ ..... ....|.|..-+ ++..+... |-
T Consensus 24 ~l~~vs~~i~~GE~v~iiG~sGsGKSTLl~~i~-Gl~~p--------------~~G~I~~~g~~i~~~~~~~~~~~r~~~ 88 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG-GLDTP--------------TSGDVIFNGQPMSKLSSAAKAELRNQK 88 (233)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHHHCCC
T ss_conf 984628998899899999999940999999996-69999--------------863999999998869988999873797
Q ss_pred HHHH-------------HHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEE--EECCC-CCCHHH--HHHHHHHHCCCC
Q ss_conf 9998-------------74101100012137688-99899999998627807--82589-988999--999886402244
Q gi|254780332|r 282 ISEQ-------------TEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLY--IDQTG-GISMSQ--LATRARRLKRQR 342 (504)
Q Consensus 282 is~~-------------s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~--I~d~~-~~ti~~--I~~~~r~~~~~~ 342 (504)
++.. -+|.+..+ .+.....+ .+++.+....+ .|. .+..| .+|=.+ -.+.+|.+. .
T Consensus 89 ig~v~Q~~~l~~~~tv~eni~~~l~-~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LSGGqkQRvaiAraL~--~ 162 (233)
T PRK11629 89 LGFIYQFHHLLPDFTALENVAMPLL-IGKKKPAEINSRALEMLKAV---GLEHRANHRPSELSGGERQRVAIARALV--N 162 (233)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCEECHHHHHHHHHHHHHH--C
T ss_conf 8999167523778669999988999-84999999999899999872---7366774984663899999999999996--5
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 47467767135325664432113788999999999999882791999771
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
++++++.| .|... -+. ..-..|..-|+.+.++.++.||..++
T Consensus 163 ~P~illlD-----EPTs~-LD~--~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (233)
T PRK11629 163 NPRLVLAD-----EPTGN-LDA--RNADSIFQLLGELNRLQGTAFLVVTH 204 (233)
T ss_pred CCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999992-----88887-999--99999999999999970989999868
No 91
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.36 E-value=0.0016 Score=46.24 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=76.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
-|+++---+.+|+.+.|-|+.|.|||+|+-.++- ... .....|.|..- .|+..++..++ +.
T Consensus 14 il~~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G-~~~--------------~~~G~I~~~g~~i~~~~~~~~~~~i-~~ 77 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG-LLK--------------PSSGEILLDGKDLASLSPKELARKI-AY 77 (180)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--------------CCCCEEEECCEECCCCCHHHHHCCC-CH
T ss_conf 8804377886997999998999889999999957-989--------------9872899999998969999995546-49
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCC
Q ss_conf 8741011000121376889989999999862780782589988999--99988640224447467767135325664432
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIE 362 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~ 362 (504)
.. ++.+.+.=..+-=.....+|=.+ -.+.+|.+. .++++++.| .|... -
T Consensus 78 v~---------------------Q~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~aL~--~~P~ililD-----EPts~-L 128 (180)
T cd03214 78 VP---------------------QALELLGLAHLADRPFNELSGGERQRVLLARALA--QEPPILLLD-----EPTSH-L 128 (180)
T ss_pred HH---------------------HHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH--HCCCEEEEC-----CCCCC-C
T ss_conf 99---------------------9999859977864991037999999999999998--689647885-----87544-7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 11378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 363 ENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 363 ~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+ ...-.+|.+-++.+.++.++.||..++ | -..+++-||-|+.++
T Consensus 129 D--~~~~~~i~~~i~~l~~~~~~tii~itH----------------d---l~~~~~~~d~i~vm~ 172 (180)
T cd03214 129 D--IAHQIELLELLRRLARERGKTVVMVLH----------------D---LNLAARYADRVILLK 172 (180)
T ss_pred C--HHHHHHHHHHHHHHHHHCCCEEEEEEC----------------C---HHHHHHHCCEEEEEE
T ss_conf 9--999999999999999846989999907----------------9---899999799999997
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0012 Score=47.36 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852179998789999-
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE- 284 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~- 284 (504)
...||.+---+.+|+++.|-|.+|+|||+|.--++ ..-.. ....|.|.--+++......|-+++
T Consensus 15 ~~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~-Gl~~p--------------~~G~I~~~g~~i~~~~~~~r~ig~v 79 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA-GLERP--------------DSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHCCEEEE
T ss_conf 89986638698899899999999977999999997-69999--------------8639999999999999656776798
Q ss_pred ------------HHHHCCC-CCCC--CCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf ------------8741011-0001--21376889-989999999862780782589-988--999999886402244474
Q gi|254780332|r 285 ------------QTEVPSS-KIRR--GELTRPDY-EKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLD 345 (504)
Q Consensus 285 ------------~s~I~~~-~i~~--g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~ 345 (504)
.-+|.+. +++. .+++..+. +++.+..+.+. +.=+-+-.| .+| -.+-.+.+|.+. ..++
T Consensus 80 fQ~~~Lfp~ltV~eNi~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~-l~~~~~~~p~eLSGGq~QRVaiARAl~--~~P~ 156 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLADRYPAQLSGGQRQRVALARALA--VEPK 156 (239)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 1782106799699999879973354569989999999999986549-976774896669998989999999876--4999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .+.+.- +. ..-.+|-..||.|.+|+++.+|..+. |+ ...-.-||-|++
T Consensus 157 vlllD-----EP~s~L-D~--~~~~~i~~~l~~l~~e~~~T~i~vTH----------------d~---~~a~~laDri~v 209 (239)
T cd03296 157 VLLLD-----EPFGAL-DA--KVRKELRRWLRRLHDELHVTTVFVTH----------------DQ---EEALEVADRVVV 209 (239)
T ss_pred EEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEE
T ss_conf 89973-----886646-99--99999999999999985998999988----------------99---999996999999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
|+.
T Consensus 210 m~~ 212 (239)
T cd03296 210 MNK 212 (239)
T ss_pred EEC
T ss_conf 989
No 93
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0071 Score=41.36 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=56.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789999874101100012137
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT 299 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~ 299 (504)
+-+.+.|++|+|||+-.--+|.+.. .+++.|.++++. .-|+-|
T Consensus 242 q~IALVGPTGVGKTTTIAKLAArf~---------------~~~KkVALITtD------TYRIGA---------------- 284 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH---------------GKKKTVGFITTD------HSRIGT---------------- 284 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---------------CCCCEEEEEECC------CCHHHH----------------
T ss_conf 1799989999888999999999986---------------169808999806------634769----------------
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 688998999999986278078258998899999988640224447467767
Q gi|254780332|r 300 RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvID 350 (504)
.+++.... ++-+.|+.+.. +..++...+.+++.+.+.|+|+||
T Consensus 285 ---VEQLKTYA-eIMgVPV~VV~----dp~eL~~AL~~lkdka~~DLILID 327 (436)
T PRK11889 285 ---VQQLQDYV-KTIGFEVIAVR----DEAAMTRALTYFKEEARVDYILID 327 (436)
T ss_pred ---HHHHHHHH-HHHCCCEEEEC----CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf ---99999999-98499439968----889999999987633688889992
No 94
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.011 Score=39.82 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~i 282 (504)
..-||.+---+.+|+++.|-|+-|.|||+|.-.++-- ... ....|.+.. .+++..+++.+ +
T Consensus 20 ~~~l~~isl~I~~Ge~~~iiGpNGaGKSTLlk~i~Gl-l~p--------------~~G~I~l~g~~i~~~~~~~~~~~-i 83 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-MTP--------------AHGHVWLDGEHIQHYASKEVARR-I 83 (265)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCC--------------CCEEEEECCEECCCCCHHHHHHH-E
T ss_conf 9998402889859979999999883999999999749-888--------------85299999999574897898765-5
Q ss_pred HHHHH---HCC-----CCCCCC---------CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCC
Q ss_conf 99874---101-----100012---------1376889989999999862780782589988999--9998864022444
Q gi|254780332|r 283 SEQTE---VPS-----SKIRRG---------ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRG 343 (504)
Q Consensus 283 s~~s~---I~~-----~~i~~g---------~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~g 343 (504)
+.... ++. ..+..| ....++.+++.++.+.+.=..+.-.....+|=.+ -.+.+|.+. .+
T Consensus 84 g~v~Q~~~~~~~~tv~e~v~~g~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~--~~ 161 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA--QE 161 (265)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH--CC
T ss_conf 5760135688776789988622340353001353889999999998839987864881019988999999999985--69
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
+++++.| .+... -+- ..-.++..-|+.+.++.++.|++.+. | -..+.+-||-|
T Consensus 162 P~illLD-----EPts~-LD~--~~~~~i~~~i~~l~~~~g~tvi~vtH----------------d---l~~a~~~adrv 214 (265)
T PRK10253 162 TAIMLLD-----EPTTW-LDI--SHQIDLLELLSELNREKGYTLAAVLH----------------D---LNQACRYASHL 214 (265)
T ss_pred CCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEEEC----------------C---HHHHHHHCCEE
T ss_conf 9989981-----88766-899--99999999999999850989999935----------------9---99999869999
Q ss_pred EEEEC
Q ss_conf 89725
Q gi|254780332|r 424 LFVIR 428 (504)
Q Consensus 424 ~~l~R 428 (504)
++|+.
T Consensus 215 ivl~~ 219 (265)
T PRK10253 215 IALRE 219 (265)
T ss_pred EEEEC
T ss_conf 99989
No 95
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.33 E-value=0.0038 Score=43.42 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC--------CCHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585--------2179998
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE--------MSSEQLA 278 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE--------Ms~~el~ 278 (504)
.-|+.+.--+.+|+++.|-|+.|.||||+.--++- ....................+.+.|..-. ++..+..
T Consensus 13 ~~L~~is~~i~~Ge~~~liGpNGaGKSTllk~i~G-l~~p~~G~i~i~g~~~~~~~~~igyv~Q~~~~~~~~~ltv~e~v 91 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEEHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 98850278985998999999999869999999976-87889758999999850421828997356333555897399999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH--HHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 789999874101100012137688998999999986278078258998899--999988640224447467767135325
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS--QLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~--~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
. .+... ... ..+..+.++++++.++.+.+.=..+--.....+|=. +-.+.+|.+. +++++++.| .
T Consensus 92 ~--~~~~~---~~~-~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkQRv~iAraL~--~~P~lLlLD-----E 158 (213)
T cd03235 92 L--MGLYG---HKG-LFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV--QDPDLLLLD-----E 158 (213)
T ss_pred H--HHHHH---HHH-HCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----C
T ss_conf 8--57765---432-226882999999999999879999981984657989999999999996--699999981-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 66443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
|... -+- ....++..-||.++++ ++.|+..++ | -..+++-||-|+++.
T Consensus 159 Ptsg-LD~--~~~~~~~~~i~~l~~~-g~tii~vtH----------------d---l~~~~~~~drii~l~ 206 (213)
T cd03235 159 PFAG-VDP--KTQEDIYELLRELRRE-GMTILVVTH----------------D---LGLVLEYFDRVLLLN 206 (213)
T ss_pred CCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------------C---HHHHHHHCCEEEEEC
T ss_conf 8667-899--9999999999999968-999999907----------------9---899999799999999
No 96
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.33 E-value=0.0034 Score=43.82 Aligned_cols=177 Identities=15% Similarity=0.216 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH
Q ss_conf 321013776556416772677621310027699999999998510111233333212479758999585---21799987
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT 279 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~ 279 (504)
+.|...||.+---+.+|+++.|-|+.|.||||+.--++ ..-. .....|.+...+ ++..++..
T Consensus 11 ~~~~~aL~~vsl~i~~Ge~v~i~GpSGsGKSTLl~~i~-gl~~--------------p~sG~i~i~g~~~~~~~~~~~~~ 75 (214)
T cd03292 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIY-KEEL--------------PTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCC--------------CCCEEEEECCEECCCCCHHHHHH
T ss_conf 98989982217798599899999799953999999996-2989--------------88649999999989899778999
Q ss_pred --HHHHHHHH----HCC----CCCCCC----CCCHHH-HHHHHHHHHHHHHCCEE--EECCC-CCCHHH--HHHHHHHHC
Q ss_conf --89999874----101----100012----137688-99899999998627807--82589-988999--999886402
Q gi|254780332|r 280 --RIISEQTE----VPS----SKIRRG----ELTRPD-YEKIVACSQVMQKLPLY--IDQTG-GISMSQ--LATRARRLK 339 (504)
Q Consensus 280 --R~is~~s~----I~~----~~i~~g----~l~~~e-~~~i~~a~~~l~~~~l~--I~d~~-~~ti~~--I~~~~r~~~ 339 (504)
|-++..-+ +|. ..+.-| ..+..+ .+++.++.+. ..|. .+..| .+|=.+ =.+.+|.+.
T Consensus 76 ~Rr~iG~VfQ~~~L~~~ltV~eNv~~~l~~~~~~~~~~~~rv~~~L~~---vgL~~~~~~~p~~LSGGqkQRvaIARALv 152 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL---VGLSHKHRALPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred HHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 866749990187647999799999999998499999999999999987---79965754994248889999999999997
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 24447467767135325664432113788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
+.+++++.| .|.+.- +. ..-.+|..-||.+.++ ++.||..++= -..++.-
T Consensus 153 --~~P~ill~D-----EPT~~L-D~--~~~~~i~~ll~~l~~~-g~Tii~vTHd-------------------~~~~~~~ 202 (214)
T cd03292 153 --NSPTILIAD-----EPTGNL-DP--DTTWEIMNLLKKINKA-GTTVVVATHA-------------------KELVDTT 202 (214)
T ss_pred --CCCCEEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC-CCEEEEECCC-------------------HHHHHHH
T ss_conf --299999983-----987877-98--9999999999999850-9999998989-------------------8999986
Q ss_pred CCEEEEEE
Q ss_conf 38788972
Q gi|254780332|r 420 ADVVLFVI 427 (504)
Q Consensus 420 AD~v~~l~ 427 (504)
||-|++|.
T Consensus 203 ~drv~~l~ 210 (214)
T cd03292 203 RHRVIALE 210 (214)
T ss_pred CCEEEEEE
T ss_conf 89799995
No 97
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.32 E-value=0.0061 Score=41.85 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=86.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321---24797589995852179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK---TINGGIVGFYSLEMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~---~~~g~~Vl~fSlEMs~~el~~R~is~ 284 (504)
.|+.+---+.+|+.++|-|.+|+|||+|.--+| ..-.............. .....+|.|.=-+-. +.. ++..
T Consensus 15 ~l~~isl~v~~Ge~~~i~GpSG~GKSTlLr~ia-Gl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~---LfP-~ltV 89 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA-GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA---LYP-HMTV 89 (213)
T ss_pred EECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCC---CCC-CCCH
T ss_conf 987617798699899999999880999999997-69999863999999999999976788789945876---465-4709
Q ss_pred HHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC
Q ss_conf 874101100012137688-9989999999862780782589-988--999999886402244474677671353256644
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK 360 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~ 360 (504)
.-+|.+. ++....+..+ .+++.++.+.+.=.. +.+-.| .+| -.+=.+.+|.+. ..+++++.| .+-+.
T Consensus 90 ~eNI~~~-l~~~~~~~~e~~~~v~~~l~~~gl~~-~~~~~P~~LSGGqkQRVaiARAl~--~~P~lLLlD-----EP~sa 160 (213)
T cd03301 90 YDNIAFG-LKLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIV--REPKVFLMD-----EPLSN 160 (213)
T ss_pred HHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCHH-HHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCC
T ss_conf 9999989-99859998999999999998759924-650995569999999999999987--599989983-----88764
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 32113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 361 IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 361 ~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
- +. .--.+|-..++.+.+|+++++|..+. |+ .....-||-|+.++.
T Consensus 161 L-D~--~~r~~i~~~l~~~~~~~~~T~i~vTH----------------d~---~ea~~l~dri~vm~~ 206 (213)
T cd03301 161 L-DA--KLRVQMRAELKRLQQRLGTTTIYVTH----------------DQ---VEAMTMADRIAVMND 206 (213)
T ss_pred C-CH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEEEEC
T ss_conf 2-98--99999999999999974998999999----------------98---999996998999989
No 98
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.31 E-value=0.0025 Score=44.78 Aligned_cols=147 Identities=15% Similarity=0.241 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCEEEE-------------
Q ss_conf 01377655641677267762131002769999999999851011123333321-----247975899-------------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK-----TINGGIVGF------------- 267 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~-----~~~g~~Vl~------------- 267 (504)
...||.+---+.+|+++.|-|..|+|||++.--++ ..-.............. .......+|
T Consensus 30 ~~aL~~vsl~I~~GE~~~llGpSGsGKSTLlr~ia-Gl~~p~sG~I~~~G~~v~~~~~~~R~ig~VfQ~~aLfp~lTV~e 108 (378)
T PRK09452 30 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA-GFETPDSGRIMLDGQDITHVPAENRYVNTVFQSYALFPHMTVFE 108 (378)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99993627799999899999899976999999997-69999846999999998989978988589922764378986999
Q ss_pred ---EECC---CCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCH-----HHHHH
Q ss_conf ---9585---217999878999987410110001---213768899899999998627807825899889-----99999
Q gi|254780332|r 268 ---YSLE---MSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISM-----SQLAT 333 (504)
Q Consensus 268 ---fSlE---Ms~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti-----~~I~~ 333 (504)
|.++ ++..++..|......-+.+..+.+ ..|+-.+..++.-|..-+.+-.+.+-|.|.-.+ .+++.
T Consensus 109 Nv~~~l~~~~~~~~e~~~rv~e~L~~v~L~~~~~r~p~~LSGGqqQRVaiARAL~~~P~vLLLDEPts~LD~~~r~~~~~ 188 (378)
T PRK09452 109 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 188 (378)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 99989976599879999999999875073435436835499889999999998623998999578644479999999999
Q ss_pred HHHHHCCCCCCCEEEECCHH
Q ss_conf 88640224447467767135
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDYLq 353 (504)
.+++++++.|+-+|+|-|=+
T Consensus 189 ~l~~l~~~~g~T~i~VTHD~ 208 (378)
T PRK09452 189 ELKALQRKLGITFVFVTHDQ 208 (378)
T ss_pred HHHHHHHHHCCEEEEECCCH
T ss_conf 99999998499899998899
No 99
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.0056 Score=42.15 Aligned_cols=178 Identities=16% Similarity=0.261 Sum_probs=86.6
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCEEEEEEC------CCCHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321---247975899958------521799987
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK---TINGGIVGFYSL------EMSSEQLAT 279 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~---~~~g~~Vl~fSl------EMs~~el~~ 279 (504)
|+++---+.+|+++.|-|++|+|||++.--++ ................. .....++.|.-- .|+..+-
T Consensus 15 L~~vs~~v~~Ge~~~iiGpSGsGKSTLlr~i~-Gl~~p~~G~I~~~G~di~~~~~~~r~ig~vfQ~~~Lfp~~tV~eN-- 91 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIA-GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN-- 91 (235)
T ss_pred ECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHH--
T ss_conf 90148798899899999999635999999997-499999659999999999999767897894579866899909999--
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCCHH--HHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 899998741011000121376889-989999999862780782589-98899--99998864022444746776713532
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GISMS--QLATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~ti~--~I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
|.+. ++....+..+. +++.+..+.+. +.=+.+-.| .+|=. +=.+.+|.+. ..+++++.|
T Consensus 92 --------i~~~-l~~~~~~~~e~~~rv~e~l~~~g-l~~~~~~~p~~LSGGq~QRVaiARAl~--~~P~llllD----- 154 (235)
T cd03299 92 --------IAYG-LKKRKVDKKEIERKVLEIAEMLG-IDHLLNRKPETLSGGEQQRVAIARALV--VNPKILLLD----- 154 (235)
T ss_pred --------HHHH-HHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----
T ss_conf --------9999-98769999999999999998779-977874894458999999999999997--389989992-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 5664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.+.+. -+. .--.+|-..|+.+.+++++++|..++ |+ ..+..-||-|++|+.
T Consensus 155 EP~s~-LD~--~~~~~i~~~l~~l~~~~~~T~i~vTH----------------d~---~~a~~~aDri~vl~~ 205 (235)
T cd03299 155 EPFSA-LDV--RTKEKLREELKKIRKEFGVTVLHVTH----------------DF---EEAWALADKVAIMLN 205 (235)
T ss_pred CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEEEEC
T ss_conf 88764-699--99999999999999982999999878----------------99---999996999999989
No 100
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.29 E-value=0.0057 Score=42.05 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=87.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH---HH
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585---21799987---89
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT---RI 281 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~---R~ 281 (504)
.|+++.--+.+|+.+.|.|..|+|||+|+--++- .... +...+.++--+ ++..+... +.
T Consensus 19 al~~isl~i~~Ge~~~iiG~sGsGKTTll~~i~G-l~~p--------------~~G~I~~~g~~i~~~~~~~~~~~rr~~ 83 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRP--------------TSGEVRVDGTDISKLSEKELAAFRRRH 83 (218)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCCHHHHHHHHHCC
T ss_conf 9856289986998999999999869999999966-9999--------------964999999998879989999986504
Q ss_pred HH-------------HHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCC
Q ss_conf 99-------------98741011000121376-889989999999862780782589-988999--99988640224447
Q gi|254780332|r 282 IS-------------EQTEVPSSKIRRGELTR-PDYEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGL 344 (504)
Q Consensus 282 is-------------~~s~I~~~~i~~g~l~~-~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi 344 (504)
++ ..-+|-+. ++...+.. +..+++.+..+.+. ++=+.+-.| .+|-.+ -.+.+|.+. +.+
T Consensus 84 Ig~v~Q~~~L~~~ltV~eni~~~-~~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~LSGG~kQRv~iAraL~--~~P 159 (218)
T cd03255 84 IGFVFQSFNLLPDLTALENVELP-LLLAGVPKKERRERAEELLERVG-LGDRLNHYPSELSGGQQQRVAIARALA--NDP 159 (218)
T ss_pred EEEECCCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCCCCCCHHHHHHHHHHHHHH--CCC
T ss_conf 78986675215564399999999-99849998999999998767679-378873887638999999999999985--599
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .|... -+. ..-..|.+-|+.++++.++.||..+. |+ .+.+-||-|+
T Consensus 160 ~llllD-----EPTs~-LD~--~~~~~i~~~l~~l~~~~~~tii~itH----------------d~----~~~~~aDrv~ 211 (218)
T cd03255 160 KIILAD-----EPTGN-LDS--ETGKEVMELLRELNKEAGTTIVVVTH----------------DP----ELAEYADRII 211 (218)
T ss_pred CEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------CH----HHHHHCCEEE
T ss_conf 999981-----88876-899--99999999999999962989999896----------------88----9998699899
Q ss_pred EEE
Q ss_conf 972
Q gi|254780332|r 425 FVI 427 (504)
Q Consensus 425 ~l~ 427 (504)
+++
T Consensus 212 ~m~ 214 (218)
T cd03255 212 ELR 214 (218)
T ss_pred EEE
T ss_conf 998
No 101
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.0017 Score=46.05 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=34.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 1677267762131002769999999999851011123333321247975899958
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL 270 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl 270 (504)
+..++=+|+-|.||.|||.+|..++..++. +|++|.|++.
T Consensus 103 i~~~~Nvil~Gp~GtGKThLA~Alg~~A~~---------------~G~~V~f~~~ 142 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIE---------------NGWRVLFTRT 142 (269)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH
T ss_conf 864870899899998788999999999998---------------7993999789
No 102
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0034 Score=43.78 Aligned_cols=175 Identities=19% Similarity=0.308 Sum_probs=85.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH---
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999---
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS--- 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is--- 283 (504)
..||.+---+.+|+.+.|-|.+|+|||++.-.++ .......... ...|+.+. .++.. .|-++
T Consensus 14 ~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~-Gl~~p~~G~I-------~~~g~~v~----~~~~~---~r~ig~Vf 78 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA-GFETPTSGEI-------LLDGKDIT----NLPPH---KRPVNTVF 78 (232)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEE-------EECCEECC----CCCHH---HCCEEEEE
T ss_conf 8987617488799899999999983999999997-7999985399-------99999999----99954---57756991
Q ss_pred ----------HHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEE
Q ss_conf ----------98741011000121376889-989999999862780782589-988--9999998864022444746776
Q gi|254780332|r 284 ----------EQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 284 ----------~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvI 349 (504)
..-+|.+. ++...++.++. +++.+..+.+ ++.=+-+..| .+| -.+=.+.+|.+. ..+++++.
T Consensus 79 Q~~~Lfp~ltV~~Nva~~-l~~~~~~~~e~~~rv~e~l~~v-~l~~~~~~~p~~LSGGqkQRVaiARAl~--~~P~llll 154 (232)
T cd03300 79 QNYALFPHLTVFENIAFG-LRLKKLPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALV--NEPKVLLL 154 (232)
T ss_pred CCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC-CCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 488547789199998779-9876999999999999998758-9778761996669989999999999986--59999998
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
| .+-+.- + ...-.+|-..|+.+.+++++++|..+. | -.....-||-|++|+
T Consensus 155 D-----EP~s~L-D--~~~~~~i~~~l~~l~~~~~~T~i~VTH----------------d---~~ea~~ladri~vm~ 205 (232)
T cd03300 155 D-----EPLGAL-D--LKLRKDMQLELKRLQKELGITFVFVTH----------------D---QEEALTMSDRIAVMN 205 (232)
T ss_pred C-----CCCCCC-C--HHHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEE
T ss_conf 0-----887646-9--999999999999999985999999999----------------9---999999699999998
No 103
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0034 Score=43.74 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CEEEEEE----CCCCHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479--7589995----85217999878
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING--GIVGFYS----LEMSSEQLATR 280 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g--~~Vl~fS----lEMs~~el~~R 280 (504)
+.|+++---+.+|+++.|.|+.|+|||||.--+ ...-.................+ ..++|-. ..|+..
T Consensus 15 ~~L~dvsl~i~~Ge~~~lvGpnGaGKSTLl~~i-~Gl~~p~~G~I~~~G~~i~~~~~~~g~vfQ~~~l~p~~tv~----- 88 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLI-AGFVPPQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQ----- 88 (255)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCCEEEECCCCCCCCCHHCEEEECCCCCCCCCCHH-----
T ss_conf 888131779869989999999984699999999-75998899718579964788621106994557547568799-----
Q ss_pred HHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEE--EECCC-CCCHH--HHHHHHHHHCCCCCCCEEEECCHHH
Q ss_conf 9999874101100012137688-99899999998627807--82589-98899--9999886402244474677671353
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLY--IDQTG-GISMS--QLATRARRLKRQRGLDLLIVDYIQL 354 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~--I~d~~-~~ti~--~I~~~~r~~~~~~gi~~vvIDYLql 354 (504)
.+|.+.--..| ++..+ .+++.+....+ .|. -+..| .+|=. +=.+.+|.+. .++++++.|
T Consensus 89 -----env~~~l~~~g-~~~~~~~~~~~~~L~~v---gL~~~~~~~p~~LSGGqkQRVaiArAL~--~~P~iLllD---- 153 (255)
T PRK11248 89 -----DNVAFGLQLAG-VEKMQRLEIAHQMLKKV---GLEGAEKRYIWQLSGGQRQRVGIARALA--ANPQLLLLD---- 153 (255)
T ss_pred -----HHHHHHHHHCC-CCHHHHHHHHHHHHHHC---CCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE----
T ss_conf -----99998998748-98789999999999976---9902441893349999999999999997--299999980----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 2566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 355 MTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 355 i~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+... -+ ...-..+..-|+.+.++.++.||..++ |+ .....-||-|+.|.
T Consensus 154 -EPt~~-LD--~~~r~~l~~ll~~l~~~~g~Til~vTH----------------dl---~ea~~ladrv~vm~ 203 (255)
T PRK11248 154 -EPFGA-LD--AFTREQMQELLLKLWQETGKQVLLITH----------------DI---EEAVFMATELVLLS 203 (255)
T ss_pred -CCCCC-CC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEEE
T ss_conf -88777-99--899999999999999961999999886----------------89---99999699999982
No 104
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0052 Score=42.36 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=92.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHH
Q ss_conf 137765564167726776213100276999999999985101112333332124797589995852---17999878999
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIIS 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is 283 (504)
.-|+.+---+.+|+.+.|-|..|.|||+|+--++ ..... ....|.+.-.++ +..++..+ ++
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~NGaGKSTLl~~l~-gl~~p--------------~~G~I~~~g~~i~~~~~~~~~~~-i~ 88 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG-RHQPP--------------SEGEILLDAQPLASWSSKAFARK-VA 88 (265)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCCHHHHHHH-EE
T ss_conf 9881508898799899999999980999999995-68899--------------87389999765675898998744-66
Q ss_pred HHHH-------------HCCCCC----CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCCC
Q ss_conf 9874-------------101100----01213768899899999998627807825899889999--9988640224447
Q gi|254780332|r 284 EQTE-------------VPSSKI----RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRGL 344 (504)
Q Consensus 284 ~~s~-------------I~~~~i----~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~gi 344 (504)
.... +...+. .-+.+...+.+++.++.+.+.=.++.-.....+|=.+- .+.+|.+. .++
T Consensus 89 ~v~Q~~~~~~~~tv~e~i~~g~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGGq~QRv~iAraL~--~~P 166 (265)
T PRK10575 89 YLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA--QDS 166 (265)
T ss_pred EECCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHH--CCC
T ss_conf 631124546688098888716530112332477779999999999859913651683338999999999999875--699
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .+... -+.. .-.+|..-++.++++.++.||+.+. |+ ..+..-||-|+
T Consensus 167 ~lLlLD-----EPts~-LD~~--~~~~i~~~l~~l~~~~g~tvi~vtH----------------dl---~~~~~~aDrv~ 219 (265)
T PRK10575 167 RCLLLD-----EPTSA-LDIA--HQVDVLALVHRLSQERGLTVIAVLH----------------DI---NMAARYCDYLV 219 (265)
T ss_pred CEEEEE-----CCCCC-CCHH--HHHHHHHHHHHHHHCCCCEEEEEEC----------------CH---HHHHHHCCEEE
T ss_conf 989981-----77655-8999--9999999999998628989999938----------------88---99999699999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
+|+.
T Consensus 220 vl~~ 223 (265)
T PRK10575 220 ALRG 223 (265)
T ss_pred EEEC
T ss_conf 9989
No 105
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00064 Score=49.31 Aligned_cols=176 Identities=15% Similarity=0.258 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH--HHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987--8999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT--RIIS 283 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~--R~is 283 (504)
+..|+.+---+.+|+.+.|-|..|+|||||+..++- .... ....|.|.--.++...+.. |-++
T Consensus 20 v~aL~~is~~i~~Ge~~aiiG~sGsGKSTL~~~l~G-l~~~--------------~~G~I~~~G~~i~~~~~~~~r~~ig 84 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG-LFEE--------------FEGIVKIDGERLTAENVWNLRRKIG 84 (277)
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHCCCE
T ss_conf 866443079988998999999999689999999963-8998--------------8848999999998578888851768
Q ss_pred HHH--------------HHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCCCCE
Q ss_conf 987--------------41011000121376889-9899999998627807825899889999--998864022444746
Q gi|254780332|r 284 EQT--------------EVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRGLDL 346 (504)
Q Consensus 284 ~~s--------------~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~gi~~ 346 (504)
..- .|.+. +++-.+..++. +++.++...+.=.++.-.....+|=.+- .+.+|.+. .++++
T Consensus 85 ~VfQ~p~~~l~~~tV~e~i~~g-~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~P~~LSGGqrQRvaIA~aLa--~~P~i 161 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFG-MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA--LRPEI 161 (277)
T ss_pred EEEECCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 9998976325755088889877-76669999999999999998779965655791228999999999999996--69999
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+.. .-+. ..-.+|.+-|+.|.++.++.||..+. |+ ..+.. ||-|+.|
T Consensus 162 lilD-----EPTs-~LD~--~~~~~i~~ll~~L~~~~~~Tii~iTH----------------dl---~~~~~-aDrv~vm 213 (277)
T PRK13642 162 IILD-----ESTS-MLDP--TGRSEIMRVIHEIKDKYHLTVLSITH----------------DL---DEAAS-SDRILVM 213 (277)
T ss_pred EEEE-----CCCC-CCCH--HHHHHHHHHHHHHHHHCCCEEEEEEE----------------CH---HHHHH-CCEEEEE
T ss_conf 9995-----8876-5898--99999999999999816989999945----------------88---99971-9989999
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
+
T Consensus 214 ~ 214 (277)
T PRK13642 214 R 214 (277)
T ss_pred E
T ss_conf 8
No 106
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.027 Score=36.96 Aligned_cols=93 Identities=18% Similarity=0.365 Sum_probs=56.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
+..|.++.+-|..|+|||+..--+|..... +|+.|++.+.. .-|.-|
T Consensus 203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~---------------~gkkV~LVAaD------TFRaAA------------ 249 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLK---------------QNRTVGFITTD------TFRSGA------------ 249 (407)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECC------CCCHHH------------
T ss_conf 036908999899989789999999999997---------------79917999706------677889------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH
Q ss_conf 2137688998999999986278078258998899999988640224447467767135
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq 353 (504)
.+++....+.+ +.|++..+ +..++...+..+...+++|+|+||--+
T Consensus 250 -------iEQLk~~g~rl-gVpV~~~~----dpa~l~~av~~~a~~~~~DvVIIDTAG 295 (407)
T PRK12726 250 -------VEQFQGYADKL-DVELIVAT----SPAELEEAVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred -------HHHHHHHHHHH-CCEEEEEC----CHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf -------99999999997-96499818----889999999999862899989996999
No 107
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.22 E-value=0.0023 Score=45.11 Aligned_cols=201 Identities=17% Similarity=0.259 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHH---------CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE--CC
Q ss_conf 32101377655641---------67726776213100276999999999985101112333332124797589995--85
Q gi|254780332|r 203 STGIQTLDKQMGGL---------QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS--LE 271 (504)
Q Consensus 203 ~TG~~~LD~~~gGl---------~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS--lE 271 (504)
-..|+.|....|+| ..|+++.+.|+-|+|||+|+.-+|=-+ +.... . ...+.-.+...|++ ..
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg----~-~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEG----S-EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred EEECCHHEEECCCEEEEECCCEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCCC----C-CCCCEEECCCEEECCCCC
T ss_conf 66210020103765899538746335489998888754677999985662-57878----8-765147505534037899
Q ss_pred CCHHHHHHHHHHHHHH-----------HCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCHHH--HH-
Q ss_conf 2179998789999874-----------10110001---213768899899999998627807825899--88999--99-
Q gi|254780332|r 272 MSSEQLATRIISEQTE-----------VPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISMSQ--LA- 332 (504)
Q Consensus 272 Ms~~el~~R~is~~s~-----------I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti~~--I~- 332 (504)
++.+++..+......+ ..+..|.. ..|+-.|..++.-|+.-..+..+|+-|.|+ +.+++ +.
T Consensus 416 gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 416 GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred CCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHHHHHH
T ss_conf 82999998743000145056776407446477874603457732588999999865656778865843430689999999
Q ss_pred HHHHHHCCCCC-------CCEEEECCHH--HCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 98864022444-------7467767135--32566443211-37889999999999998827919997713822016899
Q gi|254780332|r 333 TRARRLKRQRG-------LDLLIVDYIQ--LMTTSKKIEEN-RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 333 ~~~r~~~~~~g-------i~~vvIDYLq--li~~~~~~~~~-r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
..+||+....+ -|++++||+- +|-..+..+.. +...=..+-.++-.+-++++|.+ -|..+ .
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTF------RRD~~---t 566 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTF------RRDPE---T 566 (591)
T ss_pred HHHHHHHHCCCCEEEEEECCEEHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEE------ECCCC---C
T ss_conf 99999986067538999530004335411278970688756768997128899999999759579------40755---6
Q ss_pred CCCCCCCCCCCCHHHH
Q ss_conf 9984010143242233
Q gi|254780332|r 403 KRPQLSDLRESGSIEQ 418 (504)
Q Consensus 403 krP~lsDLr~Sg~IEq 418 (504)
+||++.-.-..=.-||
T Consensus 567 ~RPRvNK~gS~lDreQ 582 (591)
T COG1245 567 GRPRVNKPGSQLDREQ 582 (591)
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 8987688740455888
No 108
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0052 Score=42.41 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCEEEE---------------
Q ss_conf 013776556416772677621310027699999999998510111233333212---47975899---------------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT---INGGIVGF--------------- 267 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~---~~g~~Vl~--------------- 267 (504)
...||.+---+.+|+++.|-|..|+|||++.--++ ..-............... .....+.+
T Consensus 17 ~~al~~vsl~i~~Ge~~~llGpsG~GKTTllr~ia-Gl~~p~~G~I~~~g~~v~~~~~~~R~i~~vfQ~~~L~p~ltV~e 95 (358)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA-GLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRE 95 (358)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHH
T ss_conf 97982527798899899999998636999999997-69998862999999999999977875767725554487874878
Q ss_pred ---EEC---CCCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHHH
Q ss_conf ---958---5217999878999987410110001---2137688998999999986278078258998899-----9999
Q gi|254780332|r 268 ---YSL---EMSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLAT 333 (504)
Q Consensus 268 ---fSl---EMs~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~~ 333 (504)
|.| -++++++..|......-+.+..+.+ .+|+-.+..++.-|..-..+-.+.+-|.|.-.++ +++.
T Consensus 96 ni~~~l~~~~~~~~~~~~rv~~~l~~l~l~~~~~r~p~~LSGGq~QRvalARAL~~~P~vlllDEP~s~LD~~~r~~~~~ 175 (358)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL 175 (358)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 66557876288646788999999875226242248974789567899998357504998688738877679989999999
Q ss_pred HHHHHCCCCCCCEEEECC
Q ss_conf 886402244474677671
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDY 351 (504)
.+++++++.|+-+|+|-|
T Consensus 176 ~l~~l~~~~g~T~i~vTH 193 (358)
T PRK11650 176 EIQRLHRRLGTTSLYVTH 193 (358)
T ss_pred HHHHHHHHHCCEEEEEEC
T ss_conf 999999975977999989
No 109
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.0069 Score=41.46 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=86.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHH---H
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958---521799987---8
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLAT---R 280 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~---R 280 (504)
..||++---+.+|+.++|-|.+|+|||++.--++- .... +...|.|--- .++..++.. |
T Consensus 38 ~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~G-L~~p--------------~~G~I~~~G~~i~~~~~~~l~~~r~~ 102 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR-LIEP--------------TSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCCHHHHHHHHCC
T ss_conf 79777475888999999998998489999999975-9999--------------97599999999999998999885256
Q ss_pred HHHH-------------HHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCE--EEECCC-CCC--HHHHHHHHHHHCCC
Q ss_conf 9999-------------874101100012137688-9989999999862780--782589-988--99999988640224
Q gi|254780332|r 281 IISE-------------QTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPL--YIDQTG-GIS--MSQLATRARRLKRQ 341 (504)
Q Consensus 281 ~is~-------------~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l--~I~d~~-~~t--i~~I~~~~r~~~~~ 341 (504)
-+++ .-+|.+. ++...++..+ .+++.+..+. ..| +.+..| .+| -.|=.+.+|.+.
T Consensus 103 ~igmVFQ~~aL~P~ltV~eNV~~~-L~~~~~~~~e~~~rv~e~L~~---vgL~~~~~~~P~qLSGGq~QRVaIARALa-- 176 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFG-LEVQGVPRAEREERAAEALEL---VGLEGWEHKYPDELSGGMQQRVGLARALA-- 176 (269)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCHHHHCHHHHHHHHHHHHHH--
T ss_conf 469996157547678799998688-885289978999999999986---79867775696784948888999999986--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
..+++++.| .+-+. -+.. --.+|...|+.|.+++++.+|..+. |+ ...-+-||
T Consensus 177 ~~P~iLLlD-----EPtsa-LD~~--~~~~i~~~l~~l~~~~~~T~i~VTH----------------D~---~eA~~laD 229 (269)
T cd03294 177 VDPDILLMD-----EAFSA-LDPL--IRREMQDELLRLQAELQKTIVFITH----------------DL---DEALRLGD 229 (269)
T ss_pred CCCCEEEEC-----CCCCC-CCHH--HHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCC
T ss_conf 399899975-----87542-5999--9999999999999974999999999----------------89---99999799
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
-|++++.
T Consensus 230 rI~vm~~ 236 (269)
T cd03294 230 RIAIMKD 236 (269)
T ss_pred EEEEEEC
T ss_conf 8999989
No 110
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00085 Score=48.36 Aligned_cols=174 Identities=14% Similarity=0.208 Sum_probs=89.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH---HHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585217---9998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS---EQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~---~el~~R~is~ 284 (504)
.|+++.--+.+|+.+.|-|+.|+||||++.-++-- .. .+...|.+.--+++. .++. |-++.
T Consensus 19 aL~~vsl~i~~GE~vaivG~nGsGKSTL~~~l~Gl-l~--------------p~~G~I~i~G~~i~~~~~~~lr-~~ig~ 82 (276)
T PRK13650 19 TLDDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-LE--------------AESGSIIIDGDLLTEENVWEIR-HKIGM 82 (276)
T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CC--------------CCCEEEEECCEECCCCCHHHHH-HCEEE
T ss_conf 87875879989989999999998799999999738-89--------------8860899999999867768876-41469
Q ss_pred HHHHCC---------CCC----CCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCCHHHH--HHHHHHHCCCCCCCEE
Q ss_conf 874101---------100----012137688-9989999999862780782589-9889999--9988640224447467
Q gi|254780332|r 285 QTEVPS---------SKI----RRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GISMSQL--ATRARRLKRQRGLDLL 347 (504)
Q Consensus 285 ~s~I~~---------~~i----~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I--~~~~r~~~~~~gi~~v 347 (504)
.-+=|. ..+ ++..++.++ .+++.++.+.+.=.. +.+..| .+|=.+- .+.+|.+. .+++++
T Consensus 83 VfQ~p~~~~~~~tV~e~i~fgl~~~g~~~~e~~~rv~~~l~~~gl~~-~~~r~p~~LSGGQrQRvaIA~aLa--~~P~lL 159 (276)
T PRK13650 83 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQRVAIAGAVA--MRPKII 159 (276)
T ss_pred EEECCCHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-HHHCCHHHCCHHHHHHHHHHHHHH--CCCCEE
T ss_conf 97672010563639999987998779999999999999998779924-553890338999999999999997--399999
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.| .+... -+. ..-.+|.+.|+.|.++.++.||..++ ||- .+. -||-|+.|+
T Consensus 160 ilD-----EPTs~-LD~--~~~~~i~~~l~~l~~~~g~Tvi~iTH----------------dl~---~v~-~aDrvivm~ 211 (276)
T PRK13650 160 ILD-----EATSM-LDP--EGRLELIKTIKNIRDDYQLTVISITH----------------DLD---EVA-LSDRVLVMK 211 (276)
T ss_pred EEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEEEE----------------CHH---HHH-CCCEEEEEE
T ss_conf 983-----88665-899--99999999999999842989999957----------------789---996-099999998
Q ss_pred C
Q ss_conf 5
Q gi|254780332|r 428 R 428 (504)
Q Consensus 428 R 428 (504)
.
T Consensus 212 ~ 212 (276)
T PRK13650 212 D 212 (276)
T ss_pred C
T ss_conf 9
No 111
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0034 Score=43.83 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCEEEEE------------
Q ss_conf 0137765564167726776213100276999999999985101112333332-----12479758999------------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY-----KTINGGIVGFY------------ 268 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~-----~~~~g~~Vl~f------------ 268 (504)
...|+++---+.+|+++.|-|..|+|||++.--++ ..-............. ....+...+|-
T Consensus 16 ~~al~~vsl~i~~Ge~~~llGpsG~GKSTllr~i~-Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~ltV~e 94 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-GLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99986438898799899999999736999999997-79999954999999999879977878699940785478989999
Q ss_pred ----EC---CCCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCH---HHHHH
Q ss_conf ----58---5217999878999987410110001---213768899899999998627807825899--889---99999
Q gi|254780332|r 269 ----SL---EMSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISM---SQLAT 333 (504)
Q Consensus 269 ----Sl---EMs~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti---~~I~~ 333 (504)
.+ -++++++..|......-+.+..+.+ ..|+..+..++.-|..-+.+-++.+-|.|. +.. .+++.
T Consensus 95 Ni~~~l~~~~~~~~e~~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~LD~~~r~~~~~ 174 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEHHHH
T ss_conf 99778876389889999999999986374535558874669427799999988625998588436667888666524789
Q ss_pred HHHHHCCCCCCCEEEECCHH
Q ss_conf 88640224447467767135
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDYLq 353 (504)
.+++++++.|+-+|+|-|=+
T Consensus 175 ~l~~l~~~~g~T~i~vTHD~ 194 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHHHHHHHCCEEEEEECCH
T ss_conf 99999998698599990899
No 112
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.008 Score=40.94 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=67.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEEEEECCC---CHHHHHHHHHHHHHHHCCC
Q ss_conf 16772677621310027699999999998510111233333212479-7589995852---1799987899998741011
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING-GIVGFYSLEM---SSEQLATRIISEQTEVPSS 291 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g-~~Vl~fSlEM---s~~el~~R~is~~s~I~~~ 291 (504)
+..|-++.+-|.||+|||+-.-.+|.+++.. .| ..|.+++..= ...|. .|..+.+-|||..
T Consensus 345 ~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~--------------~g~~~valit~DtyRiga~eQ-L~~y~~ilgvpv~ 409 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ--------------HAPRDVALVTTDTQRVGGREQ-LHSYGRQLGIAVH 409 (557)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHH--------------CCCCEEEEEECCCCCHHHHHH-HHHHHHHHCCEEE
T ss_conf 5407647874377767311799999999997--------------399818999726640879999-9999998397579
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 000121376889989999999862780782589988999
Q gi|254780332|r 292 KIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ 330 (504)
Q Consensus 292 ~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~ 330 (504)
...+. ..+..+...+.+..|.+.|+.+++--+
T Consensus 410 ~~~~~-------~~l~~~l~~l~~~~lvliDTaG~~~rd 441 (557)
T PRK12727 410 EADSA-------ESLLDLLERLRDYKLVLIDTAGMGQRD 441 (557)
T ss_pred EECCH-------HHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 82899-------999999998369998999499988469
No 113
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0082 Score=40.89 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=90.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH-H--HHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521799-9--8789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ-L--ATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e-l--~~R~is~ 284 (504)
.|+.+---+.+|+.+.|-|+.|+|||||+..++-- . ......|.+.-.+..... + ..|-+..
T Consensus 26 al~~Isl~i~~GE~v~iiG~nGsGKSTL~r~l~gl-~--------------~P~~G~I~i~G~~~~~~~~~~~~r~~ig~ 90 (281)
T PRK13633 26 ALDDVNLEVKKGEFLVILGHNGSGKSTIAKHMNAL-L--------------LPSEGKVYVDGLDTSDEENLWDIRNKAGM 90 (281)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-C--------------CCCCCEEEECCEECCCHHHHHHHHHCEEE
T ss_conf 67340768879989999999998499999999758-8--------------78885699999987885669998736089
Q ss_pred HHHHCC---------CCC----CCCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCCHHHH--HHHHHHHCCCCCCCEE
Q ss_conf 874101---------100----0121376889-989999999862780782589-9889999--9988640224447467
Q gi|254780332|r 285 QTEVPS---------SKI----RRGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GISMSQL--ATRARRLKRQRGLDLL 347 (504)
Q Consensus 285 ~s~I~~---------~~i----~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~ti~~I--~~~~r~~~~~~gi~~v 347 (504)
.-+-|. ..+ ++-.++.++. +++.++.+.+.=.. +.+..| .+|=.+- .+.+|.+. .+++++
T Consensus 91 vfQ~P~~~l~~~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~~~gL~~-~~~~~p~~LSGGqkQRvaiA~aLa--~~P~iL 167 (281)
T PRK13633 91 VFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQRVAIAGILA--MRPECI 167 (281)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-HHHCCCHHCCHHHHHHHHHHHHHH--CCCCEE
T ss_conf 86688642028899999998898869999999999999998679487-663891008985999999999998--599999
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.| .+.. .-+. ..-.+|..-||.|.++.++.||..++ |+- .+.+ ||-|++++
T Consensus 168 ilD-----EPTs-~LDp--~~~~~i~~~l~~l~~e~g~Tii~vTH----------------dl~---~~~~-aDrv~vm~ 219 (281)
T PRK13633 168 IFD-----EPTA-MLDP--SGRREVVNTIKELNKKYGITIILITH----------------YME---EAVE-ADRIIVMD 219 (281)
T ss_pred EEE-----CCCC-CCCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------CHH---HHHC-CCEEEEEE
T ss_conf 981-----8734-3898--99999999999999840989999867----------------889---9973-99899998
Q ss_pred C
Q ss_conf 5
Q gi|254780332|r 428 R 428 (504)
Q Consensus 428 R 428 (504)
.
T Consensus 220 ~ 220 (281)
T PRK13633 220 K 220 (281)
T ss_pred C
T ss_conf 9
No 114
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0015 Score=46.44 Aligned_cols=173 Identities=16% Similarity=0.248 Sum_probs=90.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH---HHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179---998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE---QLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~---el~~R~is~ 284 (504)
.|+.+.--+.+|+.+.|-|+.|+|||||+..++--. ..++..|.+.--++... ++..+ ++.
T Consensus 25 ~L~~isl~i~~Ge~vaivG~nGsGKSTLlk~l~Gll---------------~p~~G~I~v~G~~i~~~~~~~~~~~-ig~ 88 (273)
T PRK13632 25 ALKNVSFTINEGEYVAILGHNGSGKSTISKILTGLL---------------KPQSGEIKIFGITISKENLKYLRKK-IGI 88 (273)
T ss_pred EEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC---------------CCCCCEEEECCEECCCCCHHHHHHH-EEE
T ss_conf 066428898499899999999986999999997387---------------7888759999999996898998743-569
Q ss_pred H--------------HHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCE
Q ss_conf 8--------------7410110001213768899-89999999862780782589-988999--9998864022444746
Q gi|254780332|r 285 Q--------------TEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDL 346 (504)
Q Consensus 285 ~--------------s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~ 346 (504)
. -.|.+. +++-.++.++.. ++..+...+ ++.=+.+..| .+|-.+ -.+.+|.+. .++++
T Consensus 89 VfQ~Pd~q~~~~tV~e~iafg-l~~~~~~~~~~~~~v~~~l~~~-gl~~~~~~~p~~LSGGqkQRvaiA~aLa--~~P~i 164 (273)
T PRK13632 89 IFQNPDNQFIGITVEDDIAFG-LENKKIPPKKMKDIIDDLAKKV-GMEDYLKKEPQNLSGGQKQRVAIASVLA--LNPEI 164 (273)
T ss_pred EEECCCHHCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC-CCHHHHHCCCHHCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 987710202775178888867-8667999999999999999986-9888774782009999999999999997--19999
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+.. .-+. ..-..+.+.|+.|.++.+..||..++ |+- .+.+ ||-|++|
T Consensus 165 liLD-----EPTs-~LD~--~~~~~l~~~l~~l~~~~g~TvI~iTH----------------d~~---~~~~-aDrv~vm 216 (273)
T PRK13632 165 IIFD-----ESTS-MLDP--KGKREIKKIMVDLRKDRKKTLISITH----------------DMD---EAIL-ADKVIVF 216 (273)
T ss_pred EEEE-----CCCC-CCCH--HHHHHHHHHHHHHHHHCCCEEEEEEE----------------CHH---HHHC-CCEEEEE
T ss_conf 9980-----7755-6998--99999999999999846989999942----------------888---9971-9999999
Q ss_pred EC
Q ss_conf 25
Q gi|254780332|r 427 IR 428 (504)
Q Consensus 427 ~R 428 (504)
+.
T Consensus 217 ~~ 218 (273)
T PRK13632 217 SN 218 (273)
T ss_pred EC
T ss_conf 89
No 115
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.17 E-value=0.0048 Score=42.61 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCEE--EE-------------
Q ss_conf 013776556416772677621310027699999999998510111233333---212479758--99-------------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS---YKTINGGIV--GF------------- 267 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~---~~~~~g~~V--l~------------- 267 (504)
+..||++---+.+|++++|-|.+|+|||++.--+|- .-............ ....+..++ +|
T Consensus 17 ~~al~~v~l~v~~Ge~~~llGpSG~GKtTlLr~iaG-l~~p~~G~I~~~g~~v~~~~p~~R~ig~VfQ~~aLfPh~tV~e 95 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 988866486998999999999995359999999976-9999873999999999999952588599978885467892999
Q ss_pred ---EECC---CCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHHH
Q ss_conf ---9585---217999878999987410110001---2137688998999999986278078258998899-----9999
Q gi|254780332|r 268 ---YSLE---MSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLAT 333 (504)
Q Consensus 268 ---fSlE---Ms~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~~ 333 (504)
|-|+ +++.++..|......-+.+..+.+ .+|+..+..++.-|..-..+-.+.+-|.|--.++ +++.
T Consensus 96 Niafgl~~~~~~~~e~~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRVAlARAL~~~P~vlLlDEPlsaLD~~lr~~l~~ 175 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRT 175 (353)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99889987699999999999999987699557656964689888799999999854998999908765359999999999
Q ss_pred HHHHHCCCCCCCEEEECCHH
Q ss_conf 88640224447467767135
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDYLq 353 (504)
.++++.++.|+-+|+|-|=|
T Consensus 176 ~l~~l~~~~~~T~i~VTHD~ 195 (353)
T TIGR03265 176 EIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred HHHHHHHHHCCEEEEECCCH
T ss_conf 99999998699899999898
No 116
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.17 E-value=0.0097 Score=40.31 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=33.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 67762131002769999999999851011123333321247975899958521
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS 273 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs 273 (504)
++++.|.-|+|||+.|.++|...|. .|++|+.+|..-.
T Consensus 2 ~i~~~GKGGVGKTT~AaalA~~lA~---------------~G~kVLlvstDPa 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAE---------------QGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCC
T ss_conf 8999689855489999999999996---------------8994999958986
No 117
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=97.17 E-value=0.001 Score=47.73 Aligned_cols=69 Identities=30% Similarity=0.416 Sum_probs=47.9
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6416772677621310027699999999998510111233333212479758999585217999878999987410110
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSK 292 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~ 292 (504)
.|=..|.-++++|.||.||||+|+-+|...-...+... ..| .=+||+||++.|+....+-..=||-.+.
T Consensus 45 ~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~--------i~g--SEvyS~E~kKTE~L~qafRrsIGvrIkE 113 (395)
T pfam06068 45 EGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCP--------ISG--SEVYSLEMKKTEALTQAFRKAIGVRIKE 113 (395)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--------EEH--HEEECCCCCHHHHHHHHHHHHHCEEEEE
T ss_conf 27757738998779998889999999997487997345--------001--1121256548899999998875568678
No 118
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0033 Score=43.91 Aligned_cols=188 Identities=14% Similarity=0.173 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCC-------CCEEE-EEECCC
Q ss_conf 32101377655641677267762131002769999999999851011123333321--247-------97589-995852
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK--TIN-------GGIVG-FYSLEM 272 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~--~~~-------g~~Vl-~fSlEM 272 (504)
|.+-+.|+++---+.+|+.+.|-|..|+|||||+..++- ................ ... ...|. .|. -
T Consensus 4 P~e~~AL~~Vsl~i~~Ge~vaiiG~sGsGKSTLl~~l~G-Ll~P~~G~i~~~g~~i~~~~~~~~~~~lr~~vG~VfQ--~ 80 (276)
T PRK13634 4 PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG-LLKPTKGTVTIGERVITAGKKNKKLKPLRKKVGIVFQ--F 80 (276)
T ss_pred CCCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCCCHHHHHHHHHCEEEEEE--C
T ss_conf 997666514477998998999999999699999999974-9998874999999988688866668998732689998--7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEE---EECCC-CCCHHHHH--HHHHHHCCCCCCC
Q ss_conf 1799987899998741011000121376889-9899999998627807---82589-98899999--9886402244474
Q gi|254780332|r 273 SSEQLATRIISEQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLY---IDQTG-GISMSQLA--TRARRLKRQRGLD 345 (504)
Q Consensus 273 s~~el~~R~is~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~---I~d~~-~~ti~~I~--~~~r~~~~~~gi~ 345 (504)
+..++....+ .-.|.+.-... .++.++. +++.++.+. ..|. .+..| .+|=.+-+ +.++.+. ..++
T Consensus 81 P~~ql~~~tV--~e~iafg~~~~-g~~~~e~~~rv~~~L~~---vgL~~~~~~r~p~~LSGGqkQRVaIA~aLa--~~P~ 152 (276)
T PRK13634 81 PEHQLFEETV--EKDICFGPMNF-GVSEEEAKQKAKEMIEL---VGLPEELLARSPFELSGGQMRRVAIAGVLA--MEPE 152 (276)
T ss_pred CCHHCCHHHH--HHHHHHHHHHC-CCCHHHHHHHHHHHHHH---CCCCHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 6200155159--99999999986-99999999999999997---699877861890018999999999999997--2999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .+.. .-+. ..-.+|..-++.|.++.++.||..++ | -..+..-||-|+.
T Consensus 153 iLllD-----EPTs-~LD~--~~~~~i~~ll~~L~~e~g~Tii~vTH----------------d---l~~~~~~aDrviv 205 (276)
T PRK13634 153 VLVLD-----EPTA-GLDP--KGRKEIMEMFYKLHKEKGLTTVLVTH----------------S---MEDAARYADQIVV 205 (276)
T ss_pred EEEEC-----CCCC-CCCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEE
T ss_conf 89976-----9854-2799--99999999999999961999999867----------------9---9999997999999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
|+.
T Consensus 206 m~~ 208 (276)
T PRK13634 206 MHK 208 (276)
T ss_pred EEC
T ss_conf 989
No 119
>PRK00254 ski2-like helicase; Provisional
Probab=97.17 E-value=0.014 Score=39.12 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=7.1
Q ss_pred CCEEEEEECCCCHHHHHHHHH
Q ss_conf 975899958521799987899
Q gi|254780332|r 262 GGIVGFYSLEMSSEQLATRII 282 (504)
Q Consensus 262 g~~Vl~fSlEMs~~el~~R~i 282 (504)
|..+++-.-+ ...++..|++
T Consensus 378 G~~iii~~~~-~~~~~~~~~~ 397 (717)
T PRK00254 378 GEAIIVSTTE-DPSKVMDRYI 397 (717)
T ss_pred CEEEEEECCC-CHHHHHHHHH
T ss_conf 5089995485-7899999986
No 120
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.17 E-value=0.0059 Score=41.94 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=74.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCEEEEEEC------CCCHHH-
Q ss_conf 137765564167726776213100276999999999985101112333332---1247975899958------521799-
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY---KTINGGIVGFYSL------EMSSEQ- 276 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~---~~~~g~~Vl~fSl------EMs~~e- 276 (504)
..||++---+.+|+++.|-|..|+|||++.--++ ................ .......+.|.-- -|+..+
T Consensus 16 ~al~~vsl~i~~GE~~~llGpSGsGKSTLlr~ia-GL~~p~sG~I~~~G~dv~~~~~~~r~Ig~vfQ~~~L~p~ltV~eN 94 (352)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA-GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (352)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCCCCCCEEEEECCCHHCCCCCHHHH
T ss_conf 9990637699999899999999846999999997-699999569999999999899300848999407121458809999
Q ss_pred ------------------HHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCC-----HHH
Q ss_conf ------------------9878999987410110001---21376889989999999862780782589988-----999
Q gi|254780332|r 277 ------------------LATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGIS-----MSQ 330 (504)
Q Consensus 277 ------------------l~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~t-----i~~ 330 (504)
+..|.......+.+..+.+ ..|+-.+..++.-|..-..+-.+.+-|.|.-. -.+
T Consensus 95 i~~gl~~~~~~~~~~~~~~~~rv~~~l~~vgL~~~~~r~p~~LSGGqrQRVaiARAL~~~P~vLLLDEPts~LD~~~r~~ 174 (352)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174 (352)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 98777542211376899999999999987599447609931499999999999999865999999908876689899999
Q ss_pred HHHHHHHHCCCCCCCEEEECCH
Q ss_conf 9998864022444746776713
Q gi|254780332|r 331 LATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 331 I~~~~r~~~~~~gi~~vvIDYL 352 (504)
|+..+++++++.|+-+|+|-|=
T Consensus 175 i~~~l~~L~~e~g~T~i~VTHD 196 (352)
T PRK10851 175 LRRWLRQLHEELKFTSVFVTHD 196 (352)
T ss_pred HHHHHHHHHHHHCCEEEEECCC
T ss_conf 9999999999739989999889
No 121
>PRK13409 putative ATPase RIL; Provisional
Probab=97.16 E-value=0.011 Score=39.90 Aligned_cols=177 Identities=17% Similarity=0.254 Sum_probs=96.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE------CCCCHHHHHHHHHHH-----
Q ss_conf 167726776213100276999999999985101112333332124797589995------852179998789999-----
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS------LEMSSEQLATRIISE----- 284 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS------lEMs~~el~~R~is~----- 284 (504)
+.+|+.+.|-|.-|.|||||+--+|=-. +... -....+.+|.|+. .+++..++..+....
T Consensus 362 i~~GEiigIvG~NGaGKTTLlKiLaG~l-kPd~--------G~V~~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~ 432 (590)
T PRK13409 362 IRKGEVIGIVGPNGIGKTTFVKLLAGVL-KPDE--------GEVDTDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC-CCCC--------CEEEECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 6047489998888887899999982887-7887--------447547748733600146868819999986244225389
Q ss_pred -----HHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCHHH---HHHHHHHHCCCCCCCEEEECC
Q ss_conf -----87410110001---21376889989999999862780782589--988999---999886402244474677671
Q gi|254780332|r 285 -----QTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTG--GISMSQ---LATRARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 285 -----~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti~~---I~~~~r~~~~~~gi~~vvIDY 351 (504)
........+.. ..||-.|..|+.-|.--+.+.+++|-|.| .+.+++ +...+|++....+.-++||||
T Consensus 433 ~~~ell~~L~l~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~~~~~~~~t~~vV~H 512 (590)
T PRK13409 433 YKSEIIKPLNLEKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRRIAEEKEKAALVVDH 512 (590)
T ss_pred HHHHHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999988788867649624409899999999998667999999948988778899999999999999866975999947
Q ss_pred HHHC---------CCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 3532---------566443211-3788999999999999882791999771382201689999840101
Q gi|254780332|r 352 IQLM---------TTSKKIEEN-RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDL 410 (504)
Q Consensus 352 Lqli---------~~~~~~~~~-r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDL 410 (504)
=..+ -..+..+.. ....--.+..++-.+=++++|.+= |.. .++||++.-.
T Consensus 513 D~~~~d~lsdrv~vf~G~p~~~~~a~~p~~~~~gmn~fl~~~~itfr------rd~---~~~rprink~ 572 (590)
T PRK13409 513 DIYMIDYISDRLMVFEGEPGKHGHASGPLDMREGMNRFLKELGITFR------RDE---ETGRPRVNKP 572 (590)
T ss_pred CHHHHHHHCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHCCCEEE------ECC---CCCCCCCCCC
T ss_conf 09999876166999817887651405984478999999987793783------178---8899875887
No 122
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.13 E-value=0.014 Score=39.19 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=34.7
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 16772677621310027699999999998510111233333212479758999585
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
+..|+=+++.|.||.|||-+|..++..++. +|++|.|++..
T Consensus 44 i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~---------------~g~~v~f~~~~ 84 (178)
T pfam01695 44 IEQAENLLLLGPPGVGKTHLACALGHQACR---------------AGYSVLFTRTP 84 (178)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECH
T ss_conf 215876899899998789999999999998---------------69859999616
No 123
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.12 E-value=0.00075 Score=48.80 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=32.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 6776213100276999999999985101112333332124797589995852
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM 272 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM 272 (504)
++++.|.-|+|||+++.|+|...|+ .|++|+++|+..
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~---------------~G~rvLlvs~DP 37 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE---------------EGKKVLLVSTDP 37 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCC
T ss_conf 9899789966199999999999996---------------899499995898
No 124
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0066 Score=41.58 Aligned_cols=178 Identities=19% Similarity=0.242 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
...||++.-=+.+|+++.|-|.+|+|||++.--++ ..-.......+ ..|..+- +++..++ .|-+++.
T Consensus 14 ~~al~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~-gl~~p~~G~I~-------i~g~~i~----~~~~~~l-rr~ig~v 80 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPTSGEIF-------IDGEDIR----EQDPVEL-RRKIGYV 80 (242)
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEE-------ECCEECC----CCCHHHH-HCCCEEE
T ss_conf 88983027688699899999999956999999997-59999815999-------9999999----9997897-3886799
Q ss_pred -------------HHHCCC-CCCCCCCCHHHH-HHHHHHHHHHHHCC-EEE-ECCC-CCCHH--HHHHHHHHHCCCCCCC
Q ss_conf -------------741011-000121376889-98999999986278-078-2589-98899--9999886402244474
Q gi|254780332|r 286 -------------TEVPSS-KIRRGELTRPDY-EKIVACSQVMQKLP-LYI-DQTG-GISMS--QLATRARRLKRQRGLD 345 (504)
Q Consensus 286 -------------s~I~~~-~i~~g~l~~~e~-~~i~~a~~~l~~~~-l~I-~d~~-~~ti~--~I~~~~r~~~~~~gi~ 345 (504)
-+|.+- ++ . .++..+. +++.+..+.+ +++ -.+ +-.| .+|=. +=.+.+|.+. ..++
T Consensus 81 fQ~~~Lfp~ltV~eNi~~~~~~-~-~~~~~~~~~rv~ell~~v-~L~~~~~~~~~p~~LSGGqkQRvaiARAl~--~~P~ 155 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKL-L-KWPKEKIRERADELLALV-GLDPAEFADRYPHELSGGQQQRVGVARALA--ADPP 155 (242)
T ss_pred ECCCCCCCCCCHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHHC-CCCCHHHCCCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 1799758888299999999997-5-999999999999999874-999301100795668999999999999996--2999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .+-+. -+. .--.+|-..|+.+.+|++..+|..+. |+ .....-||-|++
T Consensus 156 ilLlD-----EP~sa-LD~--~~~~~i~~~l~~l~~~~~~T~i~vTH----------------d~---~ea~~~aDri~v 208 (242)
T cd03295 156 LLLMD-----EPFGA-LDP--ITRDQLQEEFKRLQQELGKTIVFVTH----------------DI---DEAFRLADRIAI 208 (242)
T ss_pred EEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEE
T ss_conf 99981-----87654-698--99999999999999975999999998----------------99---999996998999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
++.
T Consensus 209 m~~ 211 (242)
T cd03295 209 MKN 211 (242)
T ss_pred EEC
T ss_conf 989
No 125
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.12 E-value=0.013 Score=39.29 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=77.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH--H-H
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585---21799987--8-9
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT--R-I 281 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~--R-~ 281 (504)
-|+.+---+.+|+++.|-|++|+||||| +++....-. .+...|.++.-+ ++..+... | -
T Consensus 13 vL~~vsl~i~~Ge~~~i~GpSGsGKSTL-L~~i~gl~~--------------p~sG~i~~~g~~~~~~~~~~~~~~rr~~ 77 (206)
T TIGR03608 13 ILDDLNLTIEKGKMVAIVGESGSGKSTL-LNIIGLLEK--------------PDSGQVYLNGQETPPINSKKASKFRREK 77 (206)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHH-HHHHHCCCC--------------CCCEEEEECCEECCCCCHHHHHHHHHCC
T ss_conf 9758077986998999987999709999-999975999--------------8975999999999989988999998658
Q ss_pred H-------------HHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCEEE--ECCC-CCCHH--HHHHHHHHHCCCC
Q ss_conf 9-------------9987410110001213768-8998999999986278078--2589-98899--9999886402244
Q gi|254780332|r 282 I-------------SEQTEVPSSKIRRGELTRP-DYEKIVACSQVMQKLPLYI--DQTG-GISMS--QLATRARRLKRQR 342 (504)
Q Consensus 282 i-------------s~~s~I~~~~i~~g~l~~~-e~~~i~~a~~~l~~~~l~I--~d~~-~~ti~--~I~~~~r~~~~~~ 342 (504)
+ +..-+|.+.-...+ .+.. ..+++.++.+. ..|.- +..| .+|=. +=.+.||.+. .
T Consensus 78 iG~VfQ~~~L~~~ltV~eNi~l~l~~~~-~~~~~~~~~~~~~L~~---vgl~~~~~~~p~~LSGGe~QRVAIARAL~--~ 151 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLALKYSK-LSKKEKREKKKEALEK---VGLNLKLKQKIYELSGGEQQRVALARAIL--K 151 (206)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH---CCCCHHHHCCCHHCCHHHHHHHHHHHHHH--C
T ss_conf 8998579876798919999999998659-9999999999999998---69905652992444869999999999982--4
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 47467767135325664432113788999999999999882791999771
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
++++++.| .|.+.- +. ..-..|..-|+.++++ +..||..+.
T Consensus 152 ~P~illaD-----EPT~~L-D~--~~~~~i~~ll~~l~~~-g~tii~vTH 192 (206)
T TIGR03608 152 PSELILAD-----EPTGSL-DP--KNRDEVLDLLLELNDE-GKTIIIVTH 192 (206)
T ss_pred CCCEEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC-CCEEEEECC
T ss_conf 99999963-----998778-99--9999999999999867-999999898
No 126
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.10 E-value=0.0042 Score=43.11 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 013776556416772677621310027699999999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAY 241 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~ 241 (504)
.+.|+++.--+.+|+++.|.|+.|.|||||...+..
T Consensus 8 ~~aL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EECCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 354675487888998999999999989999998887
No 127
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.026 Score=37.08 Aligned_cols=172 Identities=19% Similarity=0.242 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
.+-|+++-.-++||+++.|-|+.|.|||+|.-.++-.. ... ..-...|.|-..+. .+...+.-...
T Consensus 20 ~~vL~~is~~i~~Gei~~llG~nGsGKSTLl~~l~G~~-~~~-----------~~~~G~i~~~g~~~--~~~~~~~~~~~ 85 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT-EGN-----------VSVEGDIHYNGIPY--KEFAEKYPGEI 85 (202)
T ss_pred EEEEECEEEEECCCEEEEEECCCCCCHHHHHHHHHCCC-CCC-----------CCEEEEEEECCEEC--CHHHHHHHCCE
T ss_conf 89997708898098499999899998899999983787-898-----------75137999999994--05148642019
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCC
Q ss_conf 7410110001213768899899999998627807825899889999--99886402244474677671353256644321
Q gi|254780332|r 286 TEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEE 363 (504)
Q Consensus 286 s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~ 363 (504)
+-++......+.++-.|. +. +...+.. +-++ ..+|-.+= .+.+|.+. .++++++.| .+... -+
T Consensus 86 ~~v~q~~~~~~~ltv~e~--l~-~~~~~~~-~~~~---~~LSgGqkqRv~iA~aL~--~~P~illlD-----EPt~g-LD 150 (202)
T cd03233 86 IYVSEEDVHFPTLTVRET--LD-FALRCKG-NEFV---RGISGGERKRVSIAEALV--SRASVLCWD-----NSTRG-LD 150 (202)
T ss_pred EEECCCCCCCCCCCHHHH--HH-HHHHHCC-CCCC---CCCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCCCC-CC
T ss_conf 998673223768809999--99-9998465-8744---458999999999999995--299889983-----87656-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 1378899999999999988279199977-138220168999984010143242233138788972
Q gi|254780332|r 364 NRVLEITGITMALKALAKELNIPIIALS-QLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 364 ~r~~~i~~is~~lK~lA~e~~ipvi~ls-QLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
. ....+|.+.||.+|++.+..+|+.+ |. +-.+++-||-|++|+
T Consensus 151 ~--~~~~~i~~~l~~l~~~~~~t~ii~~~~~-------------------~~~~~~~~Dri~vl~ 194 (202)
T cd03233 151 S--STALEILKCIRTMADVLKTTTFVSLYQA-------------------SDEIYDLFDKVLVLY 194 (202)
T ss_pred H--HHHHHHHHHHHHHHHHCCCEEEEEEECC-------------------HHHHHHHCCEEEEEE
T ss_conf 9--9999999999999987799899999069-------------------899999699999995
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.10 E-value=0.02 Score=37.98 Aligned_cols=137 Identities=18% Similarity=0.117 Sum_probs=74.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf 267762131002769999999999851011123333321247975899958-5217999878999987410--1100012
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL-EMSSEQLATRIISEQTEVP--SSKIRRG 296 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl-EMs~~el~~R~is~~s~I~--~~~i~~g 296 (504)
.-.+|.|.||.|||..++.++....... .+.+|++++. -.-..|+..++........ ...+..+
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~-------------~~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 91 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRG-------------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGG 91 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9889989999609999999999986338-------------997599990859999999988601021020445565247
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 13768899899999998627--80782589988999999886402-2444746776713532566443211378899999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKL--PLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGIT 373 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is 373 (504)
.-. ....+++.+. ++.+ .|+..+.....+.. ...++++||||..|.+... .+...+..
T Consensus 92 ~~~-------~~~~~~~~~~~~~i~i-----~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~-----~~~~~~~~-- 152 (201)
T smart00487 92 DSK-------REQLRKLESGKTDILV-----TTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-----GFGDQLEK-- 152 (201)
T ss_pred CCH-------HHHHHHHHCCCCCEEE-----ECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCC-----CCHHHHHH--
T ss_conf 737-------9999999759998999-----5589999999727545254319999896775125-----70999999--
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999988279199977
Q gi|254780332|r 374 MALKALAKELNIPIIALS 391 (504)
Q Consensus 374 ~~lK~lA~e~~ipvi~ls 391 (504)
+...+ .-+..++++|
T Consensus 153 --~~~~~-~~~~~~i~lS 167 (201)
T smart00487 153 --LLKLL-PKNVQLLLLS 167 (201)
T ss_pred --HHHHC-CCCCCEEEEC
T ss_conf --99967-9999789992
No 129
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0067 Score=41.53 Aligned_cols=175 Identities=16% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995852---179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~ 281 (504)
|-+.||.+.--+.+|+.+.|-|..|.|||||+..++-- -. .+...|.++--++ +..++..+
T Consensus 17 g~~aL~~vs~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl-~~--------------p~~G~I~i~G~~i~~~~~~~lr~~- 80 (273)
T PRK13647 17 GTKALDGVSLVIPEGSKTAILGPNGAGKSTLLLHLNGI-YT--------------AQRGRVKVMGKVVNEENIRWIRKK- 80 (273)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CC--------------CCCEEEEECCEECCCCCHHHHHHH-
T ss_conf 88898811789889989999999997599999999669-88--------------886199999999996898999875-
Q ss_pred HHHHHHHCCC---------CCC----CCCCCHHHH-HHHHHHHHHHHHCCEE-EECC--CCCCHHHHH--HHHHHHCCCC
Q ss_conf 9998741011---------000----121376889-9899999998627807-8258--998899999--9886402244
Q gi|254780332|r 282 ISEQTEVPSS---------KIR----RGELTRPDY-EKIVACSQVMQKLPLY-IDQT--GGISMSQLA--TRARRLKRQR 342 (504)
Q Consensus 282 is~~s~I~~~---------~i~----~g~l~~~e~-~~i~~a~~~l~~~~l~-I~d~--~~~ti~~I~--~~~r~~~~~~ 342 (504)
++...+-|.. .+. +-.++.++. +++.++.+.+ .+. ..|. ..+|-.+-+ +.++.+. .
T Consensus 81 iG~vfQ~p~~ql~~~tV~e~v~fg~~~~g~~~~e~~~rv~~~L~~~---~l~~~~~~~p~~LSGGqkqRvaiA~aL~--~ 155 (273)
T PRK13647 81 VGLVFQDPDDQLFSSTVWDDVAFGPQNLELDKKEILRRVEEALKAV---DMWDLREKAPYHLSYGQKKRVAIAGVLA--M 155 (273)
T ss_pred CEEEECCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHH--H
T ss_conf 2488107024305241999999999885999999999999999877---9587664793339998999999999998--1
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
++++++.| .+... -+- ....++.+-|+.|+++ +..||..++ +-..+.+-||-
T Consensus 156 ~P~lliLD-----EPtag-LDp--~~~~~l~~~l~~L~~~-G~Tvi~vtH-------------------dl~~~~~~aDr 207 (273)
T PRK13647 156 EPDIIVLD-----EPMAY-LDP--RGKEELTAILNRLNNE-GKTVIVATH-------------------DVDLALEWADQ 207 (273)
T ss_pred CCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC-------------------CHHHHHHHCCE
T ss_conf 99999997-----97657-999--9999999999999848-999999941-------------------78999996999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|++|+.
T Consensus 208 vivl~~ 213 (273)
T PRK13647 208 VVVLNA 213 (273)
T ss_pred EEEEEC
T ss_conf 999989
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.09 E-value=0.004 Score=43.24 Aligned_cols=178 Identities=21% Similarity=0.268 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHH--H
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958---521799987--8
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLAT--R 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~--R 280 (504)
++.|+++---+.+|+.+.|-|+.|+|||+++--++- .-.. ....|.|..- +++..+... |
T Consensus 18 ~~~L~dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G-l~~p--------------~~G~I~~~g~~i~~~~~~~~~~~~~ 82 (228)
T cd03257 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLKP--------------TSGSIIFDGKDLLKLSRRLRKIRRK 82 (228)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHHHCC
T ss_conf 899856078986998999999999869999999972-8987--------------8866998996467799999997246
Q ss_pred HHHHHHHHC------CCC----C-----CCCCCCHHHHHHHHHHHHHHHHCCE---EEECCC-CCCHHHH--HHHHHHHC
Q ss_conf 999987410------110----0-----0121376889989999999862780---782589-9889999--99886402
Q gi|254780332|r 281 IISEQTEVP------SSK----I-----RRGELTRPDYEKIVACSQVMQKLPL---YIDQTG-GISMSQL--ATRARRLK 339 (504)
Q Consensus 281 ~is~~s~I~------~~~----i-----~~g~l~~~e~~~i~~a~~~l~~~~l---~I~d~~-~~ti~~I--~~~~r~~~ 339 (504)
-++...+=| ... + ..+...+ +...-..+...+....+ +.+-.| .+|=.+- .+.+|.+.
T Consensus 83 ~ig~v~Q~~~~~l~p~~tv~e~v~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~p~~LSGGq~QRv~iAraL~ 161 (228)
T cd03257 83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK-KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred CEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf 37999328134128647499999999998278752-89999999999713898599874486327988999999821104
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 24447467767135325664432113788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
.++++++.| .+.+. -+. ..-.+|..-|+.+.++.++.||..++ +-..+++-
T Consensus 162 --~~P~iLllD-----EPTs~-LD~--~~~~~i~~~l~~l~~~~~~tii~vtH-------------------d~~~~~~~ 212 (228)
T cd03257 162 --LNPKLLIAD-----EPTSA-LDV--SVQAQILDLLKKLQEELGLTLLFITH-------------------DLGVVAKI 212 (228)
T ss_pred --CCCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC-------------------CHHHHHHH
T ss_conf --799999994-----88764-799--99999999999999850989999868-------------------99999996
Q ss_pred CCEEEEEEC
Q ss_conf 387889725
Q gi|254780332|r 420 ADVVLFVIR 428 (504)
Q Consensus 420 AD~v~~l~R 428 (504)
||-|++|+.
T Consensus 213 aDrv~vm~~ 221 (228)
T cd03257 213 ADRVAVMYA 221 (228)
T ss_pred CCEEEEEEC
T ss_conf 999999979
No 131
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.014 Score=39.20 Aligned_cols=142 Identities=9% Similarity=0.202 Sum_probs=69.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---------CCCEE--E----------
Q ss_conf 37765564167726776213100276999999999985101112333332124---------79758--9----------
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI---------NGGIV--G---------- 266 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~---------~g~~V--l---------- 266 (504)
.+|++---+.+|++++|-|.+|+|||++.--++. .-................ .+..+ +
T Consensus 43 Av~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~g-L~~Pt~G~I~i~G~di~~~~~~~l~~~rrr~igmVFQ~~aL~P~~ 121 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 8974076887999999999998469999999975-999898189999999998997898765146559995797414388
Q ss_pred ------EEECC---CCHHHHHHHHHHHHHHHCCCCCCC--C-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCH-----H
Q ss_conf ------99585---217999878999987410110001--2-13768899899999998627807825899889-----9
Q gi|254780332|r 267 ------FYSLE---MSSEQLATRIISEQTEVPSSKIRR--G-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISM-----S 329 (504)
Q Consensus 267 ------~fSlE---Ms~~el~~R~is~~s~I~~~~i~~--g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti-----~ 329 (504)
-|.++ ++..+...|.......|.+....+ + .|+-.+..++.-|..-..+-++.+-|.|.-.+ .
T Consensus 122 TV~eNi~~~l~~~~~~~~e~~~ra~e~L~~VgL~~~~~~yP~eLSGGqqQRVaiARALa~~P~iLL~DEP~SALDp~~r~ 201 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 88887878999849998999999999999749902421893448999999999999986299999970876545989999
Q ss_pred HHHHHHHHHCCCCCCCEEEEC
Q ss_conf 999988640224447467767
Q gi|254780332|r 330 QLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 330 ~I~~~~r~~~~~~gi~~vvID 350 (504)
+|...++++.++.+.-+|||=
T Consensus 202 ~i~~~l~~L~~~~~~TiifVT 222 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred HHHHHHHHHHHHHCCEEEEEC
T ss_conf 999999999998599999989
No 132
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.09 E-value=0.0075 Score=41.16 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=77.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121376
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
+.|..|..|+|||+++.|+|...++ .|++|+++-+....- +..++.+|.+..
T Consensus 2 i~v~s~kggvgkst~~~~la~~l~~---------------~g~~v~~~d~di~gp-------------sip~~~rGp~~~ 53 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAK---------------LGYKVGLLDADIYGP-------------SIPKMWRGPMKM 53 (169)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEEECCCC-------------CCCEEEECHHHH
T ss_conf 8997499988199999999999998---------------799789997137999-------------755012047389
Q ss_pred HHHHHHHHHHHHH--HHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8899899999998--62780782589988999999886402244474677671353256644321137889999999999
Q gi|254780332|r 301 PDYEKIVACSQVM--QKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKA 378 (504)
Q Consensus 301 ~e~~~i~~a~~~l--~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~ 378 (504)
.- +.+..... .++.+.|-|+|.=|=++..+.+..+.. -.+|+| +.++. ..+. -.++...
T Consensus 54 ~~---i~q~l~~~~w~~lDyLIID~PPGtgD~~lt~~~~~~~---d~~IvV------TTP~~------~s~~-Da~r~i~ 114 (169)
T cd02037 54 GA---IKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPI---DGAVIV------TTPQE------VALD-DVRKAID 114 (169)
T ss_pred HH---HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC---CCEEEE------ECCCH------HHHH-HHHHHHH
T ss_conf 99---9999985254667889996899987077879875056---747999------46958------8999-9999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 998827919997713822016899998401014324223313
Q gi|254780332|r 379 LAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 379 lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
+++++++||+.+- .||..-.-++ .-....+.++|..|.-|
T Consensus 115 ~~~~~~i~i~GvV-eNMs~~~c~~-c~~~~~ifg~~~~~~la 154 (169)
T cd02037 115 MFKKVNIPILGVV-ENMSYFVCPH-CGKKIYIFGKGGGEKLA 154 (169)
T ss_pred HHHHCCCCEEEEE-ECCCCCCCCC-CCCEEECCCCCHHHHHH
T ss_conf 9997599707999-8796660799-99735278884499999
No 133
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.09 E-value=0.036 Score=35.98 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=88.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217--9998789999874101100012
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS--EQLATRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~--~el~~R~is~~s~I~~~~i~~g 296 (504)
..++.+.|--|.||||.+--+|...-+ +|++|++.+..--+ .-=..+.++...+||...-..+
T Consensus 97 P~Vim~vGlqGsGKTTT~aKLA~~~kk---------------~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~ 161 (433)
T PRK00771 97 PQTILLVGLQGSGKTTTAAKLARYFQK---------------KGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKE 161 (433)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 858999737889789999999999997---------------79946785067883689999999998638873178899
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCCCC-CHH-HHHHHHHHHCCCCCCC--EEEECCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 137688998999999986278078258998-899-9999886402244474--677671353256644321137889999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTGGI-SMS-QLATRARRLKRQRGLD--LLIVDYIQLMTTSKKIEENRVLEITGI 372 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~-ti~-~I~~~~r~~~~~~gi~--~vvIDYLqli~~~~~~~~~r~~~i~~i 372 (504)
. ++ ..-+.++....+++.+.|.||++- .++ ++...+.++++.-.++ +.|+|-. .+ |..-
T Consensus 162 ~-dp--~~i~~~a~~~~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~--------~G----Q~a~-- 224 (433)
T PRK00771 162 K-DA--VKIVKEGLEKLKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDAT--------IG----QQAS-- 224 (433)
T ss_pred C-CH--HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC--------CC----HHHH--
T ss_conf 9-99--999999999845698899977652104099999999998775797689986544--------22----6789--
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99999999882791999771382
Q gi|254780332|r 373 TMALKALAKELNIPIIALSQLSR 395 (504)
Q Consensus 373 s~~lK~lA~e~~ipvi~lsQLnR 395 (504)
...+.+.+.+++--|.|+-|-.
T Consensus 225 -~~a~~F~~~~~i~gvIlTKlDg 246 (433)
T PRK00771 225 -EQAKAFKEAVGIGGIIITKLDG 246 (433)
T ss_pred -HHHHHHHHHCCCCEEEEECCCC
T ss_conf -9999998753887379972567
No 134
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0079 Score=41.01 Aligned_cols=178 Identities=18% Similarity=0.238 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH--
Q ss_conf 1013776556416772677621310027699999999998510111233333212479758999585---21799987--
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT-- 279 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~-- 279 (504)
.+..||.+.--+.+|+.+-|-|..|.|||+++-.+.. ... .....|.|..-+ ++..++..
T Consensus 17 ~v~AL~~Vsl~I~~Gei~giIG~SGaGKSTLlr~i~g-L~~--------------ptsG~I~~~G~dl~~l~~~~l~~~R 81 (343)
T PRK11153 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LER--------------PTSGSVIVDGQDLTTLSESELTKAR 81 (343)
T ss_pred EEEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--------------CCCEEEEECCEECCCCCHHHHHHHH
T ss_conf 8999966188998998999999999869999999965-999--------------9963999999999879988999986
Q ss_pred HHHHHHHH-------------HCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEEEECCC-CCCHHHH--HHHHHHHCCCC
Q ss_conf 89999874-------------10110001213768899-89999999862780782589-9889999--99886402244
Q gi|254780332|r 280 RIISEQTE-------------VPSSKIRRGELTRPDYE-KIVACSQVMQKLPLYIDQTG-GISMSQL--ATRARRLKRQR 342 (504)
Q Consensus 280 R~is~~s~-------------I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~I~d~~-~~ti~~I--~~~~r~~~~~~ 342 (504)
|-+++.-+ |.+. ++-...+..++. ++.+..+.+ ++.=..+..| .+|=.+= .+.+|.+. .
T Consensus 82 r~Ig~ifQ~~~l~~~~tV~env~~~-l~~~~~~k~~~~~rv~elL~~v-gL~~~~~~~p~~LSGGqkQRV~IArALa--~ 157 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFGNVALP-LELDNTPKDEIKRRVTELLDLV-GLGDKHDSYPANLSGGQKQRVAIARALA--S 157 (343)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC-CCCHHHCCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf 3869995066337887289999999-9976999999999999999877-9944761975118999999999999986--6
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++.| .+.+. -+. ..-.+|..-||.|.+|+++.||..+. +-+.+++-||-
T Consensus 158 ~P~iLl~D-----EPTsa-LDp--~t~~~Il~lL~~l~~e~g~TivlITH-------------------dm~~v~~icdr 210 (343)
T PRK11153 158 NPKVLLCD-----EATSA-LDP--ATTRSILELLKDINRRLGLTILLITH-------------------EMDVVKRICDC 210 (343)
T ss_pred CCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC-------------------CHHHHHHHCCE
T ss_conf 99999992-----88765-899--99999999999999961989999888-------------------99999986999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|+.++.
T Consensus 211 VaVm~~ 216 (343)
T PRK11153 211 VAVISN 216 (343)
T ss_pred EEEEEC
T ss_conf 999989
No 135
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0089 Score=40.62 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=90.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--------------
Q ss_conf 137765564167726776213100276999999999985101112333332124797589995852--------------
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM-------------- 272 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM-------------- 272 (504)
+.|+++---+.+|+++.|-|..|.|||+|+..++- .-.. +...|.+.....
T Consensus 21 ~aL~~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~G-Ll~p--------------~~G~I~~~g~~i~~~~~~~~~~~~r~ 85 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLKP--------------TTGTVTVDDITITHKTKDKYIRPVRK 85 (286)
T ss_pred CEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHHHHHH
T ss_conf 06624177986998999999999819999999970-7888--------------88759999898755574678999874
Q ss_pred --------CHHHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCCHHHHHH--HHHHHCC
Q ss_conf --------179998789999874101100012137688-9989999999862780782589-988999999--8864022
Q gi|254780332|r 273 --------SSEQLATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GISMSQLAT--RARRLKR 340 (504)
Q Consensus 273 --------s~~el~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~~--~~r~~~~ 340 (504)
+..++....+. -.|-+. .++-.++.++ ++++.++...+.-..=+.+..| .+|=.+-+. .++.+.
T Consensus 86 ~ig~VfQ~P~~ql~~~tV~--~~i~fg-~~~~g~~~~e~~~r~~~~l~~~gl~~~~~~~~p~~LSGGqkqRVaiA~aLa- 161 (286)
T PRK13646 86 RIGMVFQFPESQLFEDTVE--REMIFG-PKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA- 161 (286)
T ss_pred CEEEEEECCHHHHHHHHHH--HHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH-
T ss_conf 0899998840222077899--999867-977799999999999999998499475775694329999999999999985-
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 44474677671353256644321137889999999999998827919997713822016899998401014324223313
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
.++++++.| .+.. .-+. ..-.+|..-|+.|-++.++.||..+. | -..+.+-|
T Consensus 162 -~~P~iLilD-----EPTa-gLDp--~~~~~i~~ll~~l~~~~g~TiI~iTH----------------d---m~~v~~~a 213 (286)
T PRK13646 162 -MNPDIIVVD-----EPTA-GLDP--QSKRQVMRLLKSLQTDENKAIILISH----------------D---MNEVARYA 213 (286)
T ss_pred -CCCCEEEEE-----CCCC-CCCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHC
T ss_conf -198999983-----8744-3898--99999999999999953989999913----------------8---99999969
Q ss_pred CEEEEEEC
Q ss_conf 87889725
Q gi|254780332|r 421 DVVLFVIR 428 (504)
Q Consensus 421 D~v~~l~R 428 (504)
|-|+.++.
T Consensus 214 drv~vm~~ 221 (286)
T PRK13646 214 DEVIVMKE 221 (286)
T ss_pred CEEEEEEC
T ss_conf 99999989
No 136
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=97.05 E-value=0.0094 Score=40.43 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=75.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789999874101100012137
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT 299 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~ 299 (504)
.|. |.|.+++|||++.-.++.. +. ..... .....||++ .+|+..
T Consensus 63 ~lL-lvGdsnnGKT~Iv~rF~~~----hp--~~~d~---~~~~~PVl~--vq~P~~------------------------ 106 (302)
T pfam05621 63 NLL-LVGPTNNGKSMIVEKFRRA----HP--AGSDA---DQEHIPVLV--VQMPSE------------------------ 106 (302)
T ss_pred CEE-EEECCCCCHHHHHHHHHHH----CC--CCCCC---CCCCCEEEE--EECCCC------------------------
T ss_conf 558-8707988789999999996----79--98786---667021899--976999------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHC-CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 68899899999998627807825899889999998864022444746776713532-56644321137889999999999
Q gi|254780332|r 300 RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLM-TTSKKIEENRVLEITGITMALKA 378 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli-~~~~~~~~~r~~~i~~is~~lK~ 378 (504)
+.+ .++..++=.--..| ..++-++...+..+.++-++.|+.++|||=++-+ .++. +.| -++...||.
T Consensus 107 p~~-~~lY~~IL~~l~aP----~~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~-----~~q--r~~ln~LK~ 174 (302)
T pfam05621 107 PSV-IRFYVALLAAMGAP----LRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNS-----VNR--REFLNLLRF 174 (302)
T ss_pred CCH-HHHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCH-----HHH--HHHHHHHHH
T ss_conf 886-89999999983787----788877899999999999974987899854365604868-----899--999999999
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 9988279199977
Q gi|254780332|r 379 LAKELNIPIIALS 391 (504)
Q Consensus 379 lA~e~~ipvi~ls 391 (504)
|..|+.||+|++-
T Consensus 175 L~Nel~IpiV~vG 187 (302)
T pfam05621 175 LGNELRIPLVGVG 187 (302)
T ss_pred HHHCCCCCEEEEC
T ss_conf 8636587869953
No 137
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.05 E-value=0.0087 Score=40.70 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCC---CCCCCCEE--EE-----------
Q ss_conf 013776556416772677621310027699999999998510--1112333332---12479758--99-----------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY--KAELQTDGSY---KTINGGIV--GF----------- 267 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~--~~~~~~~~~~---~~~~g~~V--l~----------- 267 (504)
...|+++---+.+|+++.|-|.+|+|||++.--+|- .-... .......... ......++ +|
T Consensus 18 ~~al~dvsl~i~~GE~~~llGpSG~GKTTlLr~iaG-L~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhltV 96 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCH
T ss_conf 889937671999998999999997459999999977-7677788179999999999899888994897179853689809
Q ss_pred -----EE---CCCCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HH
Q ss_conf -----95---85217999878999987410110001---2137688998999999986278078258998899-----99
Q gi|254780332|r 268 -----YS---LEMSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QL 331 (504)
Q Consensus 268 -----fS---lEMs~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I 331 (504)
|. ..|++.++..|+.....-+.+..+.+ .+|+-.+..++.-|..-..+-.+.+-|.|--.++ ++
T Consensus 97 ~eNia~~L~~~~~~~~e~~~rv~e~l~~vgL~~~~~r~P~~LSGGq~QRVAlARAL~~~P~ilLlDEP~saLD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 99998999865999999999999998778996786269667899899999999997559998998188765599999999
Q ss_pred HHHHHHHCCCC-CCCEEEECCHH
Q ss_conf 99886402244-47467767135
Q gi|254780332|r 332 ATRARRLKRQR-GLDLLIVDYIQ 353 (504)
Q Consensus 332 ~~~~r~~~~~~-gi~~vvIDYLq 353 (504)
+..++++.++. ++-+|+|-|=+
T Consensus 177 ~~~l~~l~~~l~~~T~i~VTHD~ 199 (362)
T TIGR03258 177 REEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred HHHHHHHHHHCCCCEEEEECCCH
T ss_conf 99999999976798899989998
No 138
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.0065 Score=41.64 Aligned_cols=176 Identities=19% Similarity=0.286 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHH--H
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987--8
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLAT--R 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~--R 280 (504)
+..||.+---+.+|+.+.|-|++|+|||+++--++. ... .....|.|-. ..|+..++.. |
T Consensus 18 ~~al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~g-L~~--------------p~sG~I~~~g~~i~~~~~~~~~~~Rr 82 (233)
T cd03258 18 VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LER--------------PTSGSVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--------------CCCCEEEECCEECCCCCHHHHHHHHC
T ss_conf 999848288999999999988980589999999967-999--------------99808999999989799999999862
Q ss_pred HHHHHHH----HCCCC--------CCCCCCCHHHH-HHHHHHHHHHHHCCEE--EECCC-CCCHHH--HHHHHHHHCCCC
Q ss_conf 9999874----10110--------00121376889-9899999998627807--82589-988999--999886402244
Q gi|254780332|r 281 IISEQTE----VPSSK--------IRRGELTRPDY-EKIVACSQVMQKLPLY--IDQTG-GISMSQ--LATRARRLKRQR 342 (504)
Q Consensus 281 ~is~~s~----I~~~~--------i~~g~l~~~e~-~~i~~a~~~l~~~~l~--I~d~~-~~ti~~--I~~~~r~~~~~~ 342 (504)
-+++.-+ +|... ++...++..+. +++.+. +....|. .+..| .+|=.+ =.+.+|.+. .
T Consensus 83 ~ig~VFQ~~~L~~~~tv~~nv~~~l~~~~~~~~~~~~r~~~l---L~~vgL~~~~~~yP~eLSGGq~QRVaIARAL~--~ 157 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLEL---LELVGLEDKADAYPAQLSGGQKQRVGIARALA--N 157 (233)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf 587794377889988399999999997499999999999999---98679916762696526778889999999983--3
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++-| .+.+.- +... -.+|..-||.|.+|+++.+|..+. | -+.+.+-||-
T Consensus 158 ~P~lllaD-----EPTs~L-D~~~--~~~il~ll~~l~~e~g~t~i~vTH----------------D---l~~~~~~adr 210 (233)
T cd03258 158 NPKVLLCD-----EATSAL-DPET--TQSILALLRDINRELGLTIVLITH----------------E---MEVVKRICDR 210 (233)
T ss_pred CCCEEEEC-----CCCCCC-CHHH--HHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCE
T ss_conf 99899965-----976646-9889--999999999999972989999898----------------9---9999986997
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|+++|.
T Consensus 211 v~vm~~ 216 (233)
T cd03258 211 VAVMEK 216 (233)
T ss_pred EEEEEC
T ss_conf 999979
No 139
>TIGR02239 recomb_RAD51 DNA repair protein RAD51; InterPro: IPR011941 Homologous recombination is an evolutionarily conserved mechanism for the repair of double-strand breaks in DNA and the generation of genetic diversity. The primary function of homologous recombination in mitotic cells is to repair double-strand breaks or single-strand gaps that form as a result of replication fork collapse, from processing of spontaneous damage, and from exposure to DNA-damaging agents. During meiosis, homologous recombination is essential to establish a physical connection between homologous chromosomes to ensure their correct disjunction at the first meiotic division. In addition, the high frequency of meiotic recombination contributes to diversity by creating new linkage arrangements between genes, or parts of genes . The central step of homologous recombination is synapsis, the process of bringing together the two homologous strands. Rad51, a eukaryotic homologue of the prokaryotic recombinase RecA, mediates this process in eukaryotes . Firstly a single-stranded DNA tail is coated by ATP-bound Rad51 to yield a nucleoprotein filament. This filament then searches for a homologous sequence within double-stranded DNA, and catalyses the exchange of strands between the single-stranded and double-stranded DNA substrates. The original broken end of the resulting branched DNA is now aligned with an appropriate matching sequence in an intact duplex, and is further processed by other enzymes . Rad51 contains an N-terminal alpha-helical DNA binding domain not found in RecA, and a RecA-like C-terminal ATPase domain , . The active form of this protein is a long helical filament where the catalytically active unit is a homodimer . ; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair.
Probab=97.04 E-value=0.018 Score=38.25 Aligned_cols=172 Identities=20% Similarity=0.270 Sum_probs=104.1
Q ss_pred CCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 3664432101377655-641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 198 RLAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 198 ~~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
.+.-+.||-..||.++ ||+..|.++=|-|.=-.|||.++-.++..|-.. ....... ...+|+..|-+-.
T Consensus 74 ~~~~~~~Gs~~ld~~l~GG~e~Gsite~fGefr~Gk~q~Cht~~vtCql~--------~~~~G~~-G~~lyid~e~tfr- 143 (317)
T TIGR02239 74 EVIQLTTGSKELDKLLEGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLP--------VDQGGGE-GKALYIDTEGTFR- 143 (317)
T ss_pred HHEECCCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHEEEEEEEC--------CCCCCCC-CCEEEEECCCCCC-
T ss_conf 54121035068999860875545032211000166202210011345301--------2367876-3168872565310-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 98789999874101100012137688-99899999998627807825899889999998864022444746776713532
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
..|+.+...+..+. ..+ ++.+.-+.. ++ .| .-.++...+-.+..+..-.++|||-..-+
T Consensus 144 -~~rl~~~a~r~~l~--------~~~~l~nv~~ara----~n---~d----~q~~ll~~a~~~~~~~~~~l~~vds~~al 203 (317)
T TIGR02239 144 -PERLLAIAERYGLN--------GEDVLDNVAYARA----YN---TD----HQLKLLLQAAALMAESRYALLIVDSATAL 203 (317)
T ss_pred -HHHHHHHHHHHCCC--------HHHHHHHHHHHHH----HC---HH----HHHHHHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf -68999999862688--------7788888788765----04---16----89999999999886277214511335677
Q ss_pred -CCC--CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf -566--44-321137889999999999998827919997713822016
Q gi|254780332|r 356 -TTS--KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 356 -~~~--~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
+.+ ++ .-..|+..++...|.|..||.+++|.||...|+--+++.
T Consensus 204 yr~d~~Grgel~~rq~~l~~flr~l~~la~~f~vav~~tnqv~~~~dG 251 (317)
T TIGR02239 204 YRTDYSGRGELSARQMHLAKFLRSLQRLADEFGVAVVITNQVVAQVDG 251 (317)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHCCCC
T ss_conf 630355504588999999999999998886345468974200100354
No 140
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.006 Score=41.92 Aligned_cols=147 Identities=12% Similarity=0.186 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCEEE--------------
Q ss_conf 0137765564167726776213100276999999999985101112333332-----124797589--------------
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY-----KTINGGIVG-------------- 266 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~-----~~~~g~~Vl-------------- 266 (504)
...||.+---+.+|+++.|-|..|+|||++.--++ ................ ........+
T Consensus 32 ~~al~~vsl~I~~GE~~~llGpsGsGKSTllr~i~-Gl~~p~~G~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~e 110 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA-GFEQPSAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99990518799999899999999848999999997-69999865999999998879866665046701265587757545
Q ss_pred --EEEC---CCCHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHHH
Q ss_conf --9958---5217999878999987410110001---2137688998999999986278078258998899-----9999
Q gi|254780332|r 267 --FYSL---EMSSEQLATRIISEQTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLAT 333 (504)
Q Consensus 267 --~fSl---EMs~~el~~R~is~~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~~ 333 (504)
-|.+ -|++.++..|......-+.+..+.+ .+|+-.+..++.-|..-+.+-.+.+-|.|.-.++ +++.
T Consensus 111 Ni~~~l~~~~~~~~e~~~rv~e~l~~v~L~~~~~~~p~~LSGGqrQRVaiArAL~~~P~lLllDEPts~LD~~~r~~l~~ 190 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQL 190 (377)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 24547866599989999999999854462766658965789868789999998744997899648754479999999999
Q ss_pred HHHHHCCCCCCCEEEECCHH
Q ss_conf 88640224447467767135
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDYLq 353 (504)
.++++.++.|+-+|+|-|=+
T Consensus 191 ~l~~l~~~~g~Tii~VTHD~ 210 (377)
T PRK11607 191 EVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred HHHHHHHHHCCEEEEECCCH
T ss_conf 99999997399999999899
No 141
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.03 E-value=0.04 Score=35.61 Aligned_cols=192 Identities=13% Similarity=0.150 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH--H--HCCCCCC-----CCCC---CCCCCCCEEEEEEC---
Q ss_conf 013776556416772677621310027699999999998--5--1011123-----3333---21247975899958---
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA--D--AYKAELQ-----TDGS---YKTINGGIVGFYSL--- 270 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A--~--~~~~~~~-----~~~~---~~~~~g~~Vl~fSl--- 270 (504)
.+.|+.+--=+.+|+++.|-|+.|.|||||.-.++--.- . .+..... .... ........+.|..-
T Consensus 17 ~~aL~~isl~i~~GE~~~iiGpNGaGKSTLlk~i~Gll~~d~~~~g~i~~~g~~i~~~~~~~~~~~~~r~~ig~v~Q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCEEEECCCCC
T ss_conf 86774527898799899999899960999999997567779898417998899866576335578986457699747876
Q ss_pred ---CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCC
Q ss_conf ---521799987899998741011000121376889989999999862780782589988999--999886402244474
Q gi|254780332|r 271 ---EMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLD 345 (504)
Q Consensus 271 ---EMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~ 345 (504)
.|+..|-. +++.....|..+-..+.++.++.+++.++...+.=..+.-...+.+|=.+ -.+.+|.+. .+++
T Consensus 97 l~~~~tV~env--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~~~~LSGGqkQRv~IArAL~--~~P~ 172 (262)
T PRK09984 97 LVNRLSVLENV--LIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM--QQAK 172 (262)
T ss_pred CCCCCCHHHHH--HHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 79988799998--5465126730333304375999999999998779965650985348999999999999997--1999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .|... -+. ....+|..-|+.|+++.++.||..++ |+ ..+.+-||-|++
T Consensus 173 iLllD-----EPta~-LDp--~~~~~i~~~l~~l~~~~g~Til~vtH----------------dl---~~a~~~~Dri~v 225 (262)
T PRK09984 173 VILAD-----EPIAS-LDP--ESARIVMDTLRDINQNDGITVVVTLH----------------QV---DYALRYCERIVA 225 (262)
T ss_pred EEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEE
T ss_conf 99983-----88677-999--99999999999999854979999888----------------98---999996999999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
|+.
T Consensus 226 l~~ 228 (262)
T PRK09984 226 LRQ 228 (262)
T ss_pred EEC
T ss_conf 969
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00088 Score=48.25 Aligned_cols=174 Identities=14% Similarity=0.176 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521---799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS---SEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs---~~el~~R~i 282 (504)
.+.||.+---+.+|+.+.|-|+.|.||||++-.++- .... +...|.|..-+++ ..++. |.+
T Consensus 17 ~~aL~~is~~i~~Ge~~aliG~NGaGKSTLl~~i~G-ll~p--------------~~G~I~i~G~~i~~~~~~~~r-~~i 80 (277)
T PRK13652 17 KEALNNINFIAGRKQRIAVIGPNGAGKSTLFKHFNG-ILKP--------------TSGSVLIRGEPITKENIREVR-KFV 80 (277)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCCHHHHH-HCC
T ss_conf 879867287998998999999999479999999966-9999--------------846999999999989999997-132
Q ss_pred HHHH--------------HHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEE-EECC--CCCCHHHHH--HHHHHHCCCC
Q ss_conf 9987--------------4101100012137688-99899999998627807-8258--998899999--9886402244
Q gi|254780332|r 283 SEQT--------------EVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLY-IDQT--GGISMSQLA--TRARRLKRQR 342 (504)
Q Consensus 283 s~~s--------------~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~-I~d~--~~~ti~~I~--~~~r~~~~~~ 342 (504)
+..- .+-+.....| ++.++ ..++.++.+.+ .|. +.+. ..+|-.+-+ +.+|.+. .
T Consensus 81 g~vfQ~p~~~l~~~tv~~~i~~~~~~~g-~~~~~~~~~v~~~l~~~---gL~~~~~~~~~~LSGGqkqRvaiA~aL~--~ 154 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLG-LDEETVAHRVDEALHML---GLEELRDRVPHHLSGGEKKRVAIAGILA--M 154 (277)
T ss_pred EEEEECCCHHHCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHH--H
T ss_conf 8998776222132559999998898869-89999999999999867---9978871895448999999999999998--2
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++.| .+.. .-+ .....+|.+-|+.+.++.++.||..++ |+ ..+.+-||-
T Consensus 155 ~P~lLlLD-----EPta-gLD--p~~~~~i~~~l~~l~~~~g~Tii~vtH----------------dl---~~v~~~aDr 207 (277)
T PRK13652 155 EPQVLVLD-----EPTA-GLD--PQGVKELFDFLNALPETYGMTVIFSTH----------------QV---ELVAEMADY 207 (277)
T ss_pred CCCEEEEC-----CCCC-CCC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCE
T ss_conf 99999983-----9745-489--999999999999999850989999914----------------89---999997999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|+.|+.
T Consensus 208 i~vl~~ 213 (277)
T PRK13652 208 IYVMEK 213 (277)
T ss_pred EEEEEC
T ss_conf 999989
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.00084 Score=48.43 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--CHHHHH--H
Q ss_conf 210137765564167726776213100276999999999985101112333332124797589995852--179998--7
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM--SSEQLA--T 279 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM--s~~el~--~ 279 (504)
.|-..|+.+.--+.+|+++.|-|..|.|||+|+..++- .-. .....|.|...+. +...+. .
T Consensus 17 ~g~~aL~~isl~I~~Ge~~aiiG~NGaGKSTLl~~i~G-ll~--------------p~~G~I~~~G~~i~~~~~~~~~~r 81 (285)
T PRK13636 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILK--------------PSSGRILFDGKPIDYSRKGLMKLR 81 (285)
T ss_pred CCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--------------CCCCEEEECCEECCCCHHHHHHHH
T ss_conf 99888761378987998999999999809999999965-988--------------886089999999874434499998
Q ss_pred HHHHHHHHHCCCC---------CC----CCCCCHHH-HHHHHHHHHHHHHCCEEEECCC--CCCHHHHH--HHHHHHCCC
Q ss_conf 8999987410110---------00----12137688-9989999999862780782589--98899999--988640224
Q gi|254780332|r 280 RIISEQTEVPSSK---------IR----RGELTRPD-YEKIVACSQVMQKLPLYIDQTG--GISMSQLA--TRARRLKRQ 341 (504)
Q Consensus 280 R~is~~s~I~~~~---------i~----~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~--~~ti~~I~--~~~r~~~~~ 341 (504)
|-++....-|... +. +-.++.++ .+++.++...+.=.+ +-+.+ .+|-.+=+ +.+|.+.
T Consensus 82 ~~ig~vfQ~p~~~l~~~tV~e~v~~g~~~~g~~~~e~~~rv~~~L~~~gl~~--~~~~~~~~LSGGqkqRvaIA~aLa-- 157 (285)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLV-- 157 (285)
T ss_pred HHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 7406997076424475749999999999859999999999999998759886--652880019999999999999997--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
.++++++.| .+.. .-+ .....+|.+-|+.|+++.++.||+.++ | -..+.+-||
T Consensus 158 ~~P~iLlLD-----EPTa-gLD--p~~~~~i~~ll~~l~~e~g~TiilvtH----------------d---~~~v~~~aD 210 (285)
T PRK13636 158 MEPKVLVLD-----EPTA-GLD--PMGVSEIMKLLVEMQKELGLTIIIATH----------------D---IDIVPLYCD 210 (285)
T ss_pred CCCCEEEEE-----CCCC-CCC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCC
T ss_conf 499899997-----8755-599--999999999999999844989999948----------------8---999999699
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
-|+.|+.
T Consensus 211 rvivl~~ 217 (285)
T PRK13636 211 NVFVMKE 217 (285)
T ss_pred EEEEEEC
T ss_conf 9999989
No 144
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.021 Score=37.80 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=85.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------------CCCCCCEEEEEE----C
Q ss_conf 37765564167726776213100276999999999985101112333332-------------124797589995----8
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY-------------KTINGGIVGFYS----L 270 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~-------------~~~~g~~Vl~fS----l 270 (504)
.|+++---+.+|+.+.|.|+.|.|||+++--+ ................. .+..+..++|-. .
T Consensus 17 aL~dvsl~i~~Ge~~~iiG~nGaGKSTLl~~l-~gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~lr~~ig~VfQ~~~l~~ 95 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRQNVGMVFQQYNLWP 95 (242)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCC
T ss_conf 89420778879989999999997199999999-65888886089999999634678887799997558089930786687
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCE
Q ss_conf 52179998789999874101100012137688-9989999999862780782589-988999--9998864022444746
Q gi|254780332|r 271 EMSSEQLATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDL 346 (504)
Q Consensus 271 EMs~~el~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~ 346 (504)
.|+..+-..... .+...++..+ .+++.++.+.+. +.=+.+-.| .+|-.+ -.+.+|.+. ..+++
T Consensus 96 ~~tv~en~~~~~----------~~~~g~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSGGq~QRvaiAraL~--~~P~i 162 (242)
T PRK11124 96 HLTVQQNLIEAP----------CRVLGLSKDQALARAEKLLERLR-LKPYADRFPLHLSGGQQQRVAIARALM--MEPQV 162 (242)
T ss_pred CCCHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCCHHCCHHHHHHHHHHHHHC--CCCCE
T ss_conf 866878888899----------99849987899999999998769-777763873227999989999876433--79979
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .|... -+. ....+|..-|+.|+ +.++.||..++ | -..+..-||-|++|
T Consensus 163 LllD-----EPTs~-LD~--~~~~~i~~ll~~l~-~~g~tii~vtH----------------d---l~~~~~~adri~vl 214 (242)
T PRK11124 163 LLFD-----EPTAA-LDP--EITAQIVSIIRELA-ETGITQVIVTH----------------E---VEVARKTASRVVYM 214 (242)
T ss_pred EEEC-----CCCCC-CCH--HHHHHHHHHHHHHH-HCCCEEEEECC----------------C---HHHHHHHCCEEEEE
T ss_conf 9976-----88654-899--99999999999998-42998999888----------------9---99999969999999
Q ss_pred EC
Q ss_conf 25
Q gi|254780332|r 427 IR 428 (504)
Q Consensus 427 ~R 428 (504)
+.
T Consensus 215 ~~ 216 (242)
T PRK11124 215 EN 216 (242)
T ss_pred EC
T ss_conf 79
No 145
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.01 E-value=0.043 Score=35.43 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999998827
Q gi|254780332|r 373 TMALKALAKELN 384 (504)
Q Consensus 373 s~~lK~lA~e~~ 384 (504)
.+.+...|+..+
T Consensus 714 l~~l~~~a~~~~ 725 (903)
T PRK04841 714 LEELNENARSLR 725 (903)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998727
No 146
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.0077 Score=41.10 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
+.-++++. =+++|+.+.|-|+.|.|||+|.--++- ....... .....|..+.|-.
T Consensus 13 ~~~l~~~~-~v~~GEiv~ilGpNGaGKSTllk~i~G-~l~p~~G-------~i~~~g~~~~~~p---------------- 67 (177)
T cd03222 13 FFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAG-QLIPNGD-------NDEWDGITPVYKP---------------- 67 (177)
T ss_pred EEEECCCC-CCCCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCC-------CEEECCCCEECCC----------------
T ss_conf 89865899-558998999989999999999999968-8678899-------4666686122155----------------
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf 74101100012137688998999999986278078258998899999988640224447467767135325664432113
Q gi|254780332|r 286 TEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504)
Q Consensus 286 s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504)
+.-+|+..|..++.-|..-+.+ +++++.| .+... -+
T Consensus 68 --------q~~~LSGGqrQRv~iAral~~~----------------------------p~lllLD-----EPts~-LD-- 103 (177)
T cd03222 68 --------QYIDLSGGELQRVAIAAALLRN----------------------------ATFYLFD-----EPSAY-LD-- 103 (177)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHCC----------------------------CCEEEEC-----CCCCC-CC--
T ss_conf --------5150798999999999998239----------------------------9999974-----88653-89--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 78899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
...-.++.+.+|.++++.+..|+..+. |+ ..++.-||-|+.++
T Consensus 104 ~~~r~~i~~~ik~l~~~~~~Tvl~vsH----------------dl---~~a~~~aDrI~vl~ 146 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEH----------------DL---AVLDYLSDRIHVFE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEEE
T ss_conf 999999999999999965977999858----------------89---99998699999993
No 147
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.015 Score=38.86 Aligned_cols=181 Identities=19% Similarity=0.235 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCEEEEEE------CCCCHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332---124797589995------8521799
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY---KTINGGIVGFYS------LEMSSEQ 276 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~---~~~~g~~Vl~fS------lEMs~~e 276 (504)
...|+++---+++|+.+.|.|..|.|||+|.--++ ..-............. .......+.|.- ..|+..|
T Consensus 13 ~~al~~vs~~i~~Gei~~iiGpnGaGKSTl~~~i~-Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA-GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99984617798899899999999973999999997-59998970899999998889977878699906986588981999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECC-CCCCHHH--HHHHHHHHCCCCCCCEEEECCH
Q ss_conf 987899998741011000121376889-98999999986278078258-9988999--9998864022444746776713
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQT-GGISMSQ--LATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvIDYL 352 (504)
.. .+. ++...++..++ +++.++.+.+. +.=+.+.. ..+|=.+ -.+.+|.+. +++++++.|
T Consensus 92 nl----------~~~-~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSGG~kQrv~iAraL~--~~P~illlD-- 155 (213)
T cd03259 92 NI----------AFG-LKLRGVPKAEIRARVRELLELVG-LEGLLNRYPHELSGGQQQRVALARALA--REPSLLLLD-- 155 (213)
T ss_pred HH----------HHH-HHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEC--
T ss_conf 99----------889-98759998999999999999869-964763770338989999999987622--799999983--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 5325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|... -+ .....+|.+-++.++++.++.|++.+. | -..+++-||-|+.++.
T Consensus 156 ---EPt~g-LD--~~~~~~i~~li~~l~~~~g~tii~vtH----------------d---l~~~~~~~dri~vm~~ 206 (213)
T cd03259 156 ---EPLSA-LD--AKLREELREELKELQRELGITTIYVTH----------------D---QEEALALADRIAVMNE 206 (213)
T ss_pred ---CCCCC-CC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf ---98643-79--999999999999999962999999968----------------9---9999996999999989
No 148
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.02 Score=37.92 Aligned_cols=192 Identities=19% Similarity=0.211 Sum_probs=107.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCEEEEEEC--------CCCHHHH
Q ss_conf 3776556416772677621310027699999999998510111233333--21247975899958--------5217999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGS--YKTINGGIVGFYSL--------EMSSEQL 277 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~--~~~~~g~~Vl~fSl--------EMs~~el 277 (504)
-|+++.--+.+|+++.|-|.=|.|||||.--+ +...+........... .....+..+.|..- =++..+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~i-LGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d- 96 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAI-LGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD- 96 (254)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH-
T ss_conf 04153899748968999999888889999999-6787677426998366633346677699757610267679967999-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 8789999874101100012137688998999999986278078258998899999--98864022444746776713532
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli 355 (504)
++++- ..+...+ -+.++..+++++.+|.+...=..+.-..-..+|=.|.. -.+|.+. ..+++++.|
T Consensus 97 ---~V~~g-~~~~~g~-~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~--~~p~lllLD----- 164 (254)
T COG1121 97 ---VVLLG-RYGKKGW-FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA--QNPDLLLLD----- 164 (254)
T ss_pred ---HHHCC-CCCCCCC-CCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEC-----
T ss_conf ---98606-7544660-13666777999999999839266647955546727999999999853--699989966-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCC
Q ss_conf 56644321137889999999999998827919997713822016899998401014324223313878897255661644
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRN 435 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~ 435 (504)
.+-... +.. -...|.+-|+.|..| ++.|++.+. |-+...+.+|-|++|.|.-.+...
T Consensus 165 EP~~gv-D~~--~~~~i~~lL~~l~~e-g~tIl~vtH-------------------DL~~v~~~~D~vi~Ln~~~~~~G~ 221 (254)
T COG1121 165 EPFTGV-DVA--GQKEIYDLLKELRQE-GKTVLMVTH-------------------DLGLVMAYFDRVICLNRHLIASGP 221 (254)
T ss_pred CCCCCC-CHH--HHHHHHHHHHHHHHC-CCEEEEEEC-------------------CCHHHHHHCCEEEEECCEEEECCC
T ss_conf 875457-987--899999999999878-988999958-------------------817768538879998576366168
Q ss_pred C
Q ss_conf 2
Q gi|254780332|r 436 K 436 (504)
Q Consensus 436 ~ 436 (504)
.
T Consensus 222 ~ 222 (254)
T COG1121 222 P 222 (254)
T ss_pred H
T ss_conf 1
No 149
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.0075 Score=41.15 Aligned_cols=177 Identities=19% Similarity=0.217 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH---HHHHHHH
Q ss_conf 1013776556416772677621310027699999999998510111233333212479758999585217---9998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS---EQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~---~el~~R~ 281 (504)
|-+.|+++---+.+|+.+.|.|+.|.|||+|+..++--. . .+...|.+.-.+... -.-..|.
T Consensus 14 ~~~aL~~vsl~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll-~--------------P~~G~I~v~G~d~~~~~~~~~~r~~ 78 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-R--------------PQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-C--------------CCCCEEEECCEECCCCHHHHHHHHH
T ss_conf 984663117798489999999999980999999997068-5--------------8887299999987870567999873
Q ss_pred HHHHHHHCCC---------CCC----CCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCC
Q ss_conf 9998741011---------000----121376889-989999999862780782589-988999--99988640224447
Q gi|254780332|r 282 ISEQTEVPSS---------KIR----RGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGL 344 (504)
Q Consensus 282 is~~s~I~~~---------~i~----~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi 344 (504)
++..-+-|.. .+. +-.+...+. +++.++...+. +.-+.+..| .+|=.+ -.+.+|.+. .++
T Consensus 79 ig~vfQ~p~~q~~~~tV~e~iafg~~~~~l~~~e~~~~v~~aL~~~g-l~~~~~~~p~~LSGGqkQRvaiA~aLa--~~P 155 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG-LEKYRHRSPKTLSGGQGQCVALAGILT--MEP 155 (274)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCCCCCCHHHHHHHHHHHHHH--HCC
T ss_conf 17996582110361519999962197669999999999999999859-687762891109976999999999998--299
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .+... -+. ....+|.+.++.|. +-+..||..++ |+. .+ +.||-|+
T Consensus 156 ~iLiLD-----EPTs~-LD~--~~~~~i~~~l~~L~-~~g~TvI~itH----------------dl~---~~-~~aDrvi 206 (274)
T PRK13644 156 ECLIFD-----EVTSM-LDP--DSGIAVLERIKKLH-EKGKTIVYITH----------------NLE---EL-HDADRII 206 (274)
T ss_pred CEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHH-HCCCEEEEEEE----------------CHH---HH-HCCCEEE
T ss_conf 999997-----98667-899--99999999999998-68999999833----------------789---99-7199899
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
.|+.
T Consensus 207 vl~~ 210 (274)
T PRK13644 207 VMDR 210 (274)
T ss_pred EEEC
T ss_conf 9989
No 150
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.00 E-value=0.021 Score=37.78 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred CCCHHHH--HHHHHHHCCC-CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 9889999--9988640224-447467767135325664432113788999999999999882791999771382201689
Q gi|254780332|r 325 GISMSQL--ATRARRLKRQ-RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRD 401 (504)
Q Consensus 325 ~~ti~~I--~~~~r~~~~~-~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~ 401 (504)
.+|-.|- .+.+|.+.++ .++++++.| .+...- + ......+..-|+.|+. -+..||+.++
T Consensus 169 ~LSGGqkQRvaiAraL~~~~~~P~lllLD-----EPTs~L-D--~~~~~~l~~~l~~l~~-~G~Tvi~itH--------- 230 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILD-----EPTTGL-H--FHDVKKLLEVLQRLVD-KGNTVVVIEH--------- 230 (261)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEC-----CCCCCC-C--HHHHHHHHHHHHHHHH-CCCEEEEEEE---------
T ss_conf 66889999999999997258889679954-----863459-9--8999999999999997-8999999847---------
Q ss_pred CCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 9998401014324223313878897
Q gi|254780332|r 402 NKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 402 ~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
|| + .++ .||-|++|
T Consensus 231 -------~l--~-~~~-~aD~IivL 244 (261)
T cd03271 231 -------NL--D-VIK-CADWIIDL 244 (261)
T ss_pred -------CH--H-HHH-HCCEEEEC
T ss_conf -------78--8-997-38999993
No 151
>PRK08116 hypothetical protein; Validated
Probab=96.99 E-value=0.017 Score=38.55 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=31.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 7762131002769999999999851011123333321247975899958521799987899
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRII 282 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~i 282 (504)
.++-|.||.|||-||..||..++. +|++|+|++. .++..++-
T Consensus 111 Lll~G~~GtGKThLa~aIa~~l~~---------------~g~~V~~~~~----~~ll~~lk 152 (262)
T PRK08116 111 LLLWGSPGNGKTYLAAAIANELIE---------------KGVPVVFVNV----PELLNRIK 152 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH----HHHHHHHH
T ss_conf 899898999899999999999998---------------7993999889----99999999
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.99 E-value=0.0064 Score=41.69 Aligned_cols=173 Identities=17% Similarity=0.318 Sum_probs=84.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--HHHHHH--HHH-
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521--799987--899-
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS--SEQLAT--RII- 282 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs--~~el~~--R~i- 282 (504)
-|+.+---+.+|+++.|-|++|+|||+|.-.++- .-.. ....|.+---+++ ..++.. |-+
T Consensus 15 vL~~vsl~i~~Ge~~~ivGpSGsGKSTLL~~i~g-L~~p--------------~~G~i~i~g~~i~~~~~~~~~~rr~iG 79 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL-LEEP--------------DSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EECCEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCHHHHHHHHCCCE
T ss_conf 8867075988998999999998449999999981-9999--------------864999999999998156999867827
Q ss_pred ------------HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCE--EEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf ------------998741011000121376889989999999862780--782589-988--999999886402244474
Q gi|254780332|r 283 ------------SEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPL--YIDQTG-GIS--MSQLATRARRLKRQRGLD 345 (504)
Q Consensus 283 ------------s~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l--~I~d~~-~~t--i~~I~~~~r~~~~~~gi~ 345 (504)
+..-+|.+.-+....++..+.. ..+...|....| +.+..| .+| -.+=.+.+|.+. ..++
T Consensus 80 ~VFQ~~~L~p~ltv~eNV~~~l~~~~~~~~~e~~--~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARALa--~~P~ 155 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE--ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA--MNPK 155 (213)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHC--CCCC
T ss_conf 9967987589991999999999997699999999--99999998689978874994446929999999999963--7999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .|.+.- +. .--.+|..-|+.|+++ ++.+|..+. | -.....-||-|++
T Consensus 156 ilL~D-----EPts~L-D~--~~~~~i~~ll~~l~~~-g~T~i~VTH----------------D---~~~a~~~aDri~~ 207 (213)
T cd03262 156 VMLFD-----EPTSAL-DP--ELVGEVLDVMKDLAEE-GMTMVVVTH----------------E---MGFAREVADRVIF 207 (213)
T ss_pred EEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC-CCEEEEECC----------------C---HHHHHHHCCEEEE
T ss_conf 99970-----888877-98--9999999999999862-999999998----------------9---9999996898999
Q ss_pred EE
Q ss_conf 72
Q gi|254780332|r 426 VI 427 (504)
Q Consensus 426 l~ 427 (504)
|+
T Consensus 208 l~ 209 (213)
T cd03262 208 MD 209 (213)
T ss_pred EE
T ss_conf 97
No 153
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.98 E-value=0.0069 Score=41.47 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=81.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
.|+.+.--+.+|+.+.|-|+.|.|||+|+--++- ......... ... ..+.|.+-+- .+... +...+
T Consensus 20 vL~~isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G-~~~~~~G~I-------~~~-g~i~~v~Q~~---~l~~~--Tv~eN 85 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG-ELEKLSGSV-------SVP-GSIAYVSQEP---WIQNG--TIREN 85 (204)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHCC-CCCCCCCCC-------CCC-CCEEEEECCC---CCCCC--CHHHH
T ss_conf 2521489976998999999999858999999818-952568952-------258-9889995877---56775--09999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 10110001213768899899999---99862780----78258-99889999--99886402244474677671353256
Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
|.+. ..++++.+.++.++. ..+..+|. .|.+. ..+|-.|- .+.+|.+.+ ++++++.| .+
T Consensus 86 i~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~LSgGQkQRvalARal~~--~~~illlD-----EP 154 (204)
T cd03250 86 ILFG----KPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLD-----DP 154 (204)
T ss_pred HHCC----CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE-----CC
T ss_conf 7446----8668899999999976198898513535245237887579999999999999953--99999996-----98
Q ss_pred CCCCCCHHHHHHHHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 644321137889999999-9999988279199977138220168999984010143242233138788972
Q gi|254780332|r 358 SKKIEENRVLEITGITMA-LKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~-lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+.- +.... ..|... ++...+ -+..||..++ |+ ..+ +.||-|++|.
T Consensus 155 ts~L-D~~~~--~~i~~~l~~~~~~-~~~Tvi~itH----------------~~---~~~-~~~D~ii~l~ 201 (204)
T cd03250 155 LSAV-DAHVG--RHIFENCILGLLL-NNKTRILVTH----------------QL---QLL-PHADQIVVLD 201 (204)
T ss_pred CCCC-CHHHH--HHHHHHHHHHHHH-CCCEEEEECC----------------CH---HHH-HHCCEEEEEC
T ss_conf 7666-99999--9999999999860-8989999807----------------99---999-7099999972
No 154
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.017 Score=38.49 Aligned_cols=159 Identities=22% Similarity=0.340 Sum_probs=91.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHHHH
Q ss_conf 7765564167726776213100276999999999985101112333332124797589995852---1799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is~~ 285 (504)
||++.--+.+|-++-+-|+-|-|||++..-++ .... .....|.+=.+|+ +..+++.++ |..
T Consensus 17 l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~--------------~d~G~i~i~g~~~~~~~s~~LAk~l-SIL 80 (252)
T COG4604 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK--------------KDSGEITIDGLELTSTPSKELAKKL-SIL 80 (252)
T ss_pred ECCCEEEECCCCEEEEECCCCCCHHHHHHHHH-HHCC--------------CCCCEEEEEEEECCCCCHHHHHHHH-HHH
T ss_conf 53614541588636888899864888999999-8526--------------6786389811662568769999998-898
Q ss_pred H-------HHCCCCC--------CCCCCCHHHHHHHHHHHHHHHHCCE---EEECCCCCCHHHH-HHHHHHHCCCCCCCE
Q ss_conf 7-------4101100--------0121376889989999999862780---7825899889999-998864022444746
Q gi|254780332|r 286 T-------EVPSSKI--------RRGELTRPDYEKIVACSQVMQKLPL---YIDQTGGISMSQL-ATRARRLKRQRGLDL 346 (504)
Q Consensus 286 s-------~I~~~~i--------~~g~l~~~e~~~i~~a~~~l~~~~l---~I~d~~~~ti~~I-~~~~r~~~~~~gi~~ 346 (504)
- ++..+.+ .+|+++.++|..+.+|.+.+.=.+| |++.-++ .+- |+.+ .|+--..-|.
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSG---GQrQRAfI-AMVlaQdTdy 156 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSG---GQRQRAFI-AMVLAQDTDY 156 (252)
T ss_pred HHHCHHHEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC---CHHHHHHH-HEEEECCCCE
T ss_conf 7632021036799864237876557887757799999998774343267776775166---04553443-1044115767
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE-EEECCC
Q ss_conf 7767135325664432113788999999999999882791999-771382
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIA-LSQLSR 395 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~-lsQLnR 395 (504)
|+.| .|-.+ -+..+.+ .|++-||.+|.|++=.||+ |.-.|=
T Consensus 157 vlLD-----EPLNN--LDmkHsv-~iMk~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 157 VLLD-----EPLNN--LDMKHSV-QIMKILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred EEEC-----CCCCC--CCHHHHH-HHHHHHHHHHHHHCCEEEEEEECCCH
T ss_conf 9865-----86543--1468899-99999999999858949999931427
No 155
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.98 E-value=0.0053 Score=42.31 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=89.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHH--HHH
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958---52179998--789
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLA--TRI 281 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~--~R~ 281 (504)
..|+++.--+.+|+++.|-|..|.||||++--++- .... ....|.|.-- .++..++. .|-
T Consensus 22 ~vL~~is~~i~~Gei~~iiGpnGsGKSTLlk~i~G-l~~p--------------~~G~I~~~G~~i~~~~~~~~~~~r~~ 86 (269)
T PRK11831 22 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG-QIAP--------------DHGEILFDGENIPAMSRSRLYTVRKR 86 (269)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHHHHHC
T ss_conf 99947166887998999993999759999999967-9888--------------98669999988876588789987614
Q ss_pred HHHHH-------------HHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEE--EEC-CCCCCHHH--HHHHHHHHCCCC
Q ss_conf 99987-------------41011000121376889-9899999998627807--825-89988999--999886402244
Q gi|254780332|r 282 ISEQT-------------EVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLY--IDQ-TGGISMSQ--LATRARRLKRQR 342 (504)
Q Consensus 282 is~~s-------------~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~--I~d-~~~~ti~~--I~~~~r~~~~~~ 342 (504)
++... +|.+.--..+.+.++.. .++..+.+. ..|. .+. ...+|=.+ =.+.+|.+. .
T Consensus 87 i~~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~~v~~~Le~---~gL~~~~~~~~~~LSGGq~QRv~iAraL~--~ 161 (269)
T PRK11831 87 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEA---VGLRGAAKLMPSELSGGMARRAALARAIA--L 161 (269)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf 689853763267885999998999995589999999999999986---17654563882318999999999999997--5
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++.| .+... -+ .....+|.+-++.|.++.++.||..++ || ..+++-||-
T Consensus 162 ~P~iLlLD-----EPtsg-LD--~~~~~~i~~li~~l~~~~g~TiiivtH----------------dl---~~v~~iaDr 214 (269)
T PRK11831 162 EPDLIMFD-----EPFVG-QD--PITMGVLVKLISELNSALGVTCVVVSH----------------DV---PEVLSIADH 214 (269)
T ss_pred CCCEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCE
T ss_conf 99999982-----87567-99--999999999999999852989999864----------------98---999986999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|++|+.
T Consensus 215 v~vl~~ 220 (269)
T PRK11831 215 AWIVAD 220 (269)
T ss_pred EEEEEC
T ss_conf 999989
No 156
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.016 Score=38.67 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCC-----CCEEEEEECCCCHHHHHH
Q ss_conf 137765564167726776213100276999999999985101112333332--1247-----975899958521799987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY--KTIN-----GGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~--~~~~-----g~~Vl~fSlEMs~~el~~ 279 (504)
+-|+.+---+.+|+++.|-|+-|.|||||.-.++- ............... .... ...+.+.... +..++..
T Consensus 15 ~vL~~vsl~i~~Gei~~liGpNGaGKSTLlk~l~G-l~~p~~G~I~~~G~~~~~~~~~~~~~r~~i~~vfq~-p~~~~~~ 92 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQD-PEQQIFY 92 (271)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEECCEECCCCCCCHHHHHHCEEEEEEC-CHHHHHH
T ss_conf 88964187983897999999999809999999966-888886079999999985532379987253899307-2243347
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 89999874101100012137688-99899999998627807825899889999--9988640224447467767135325
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
. .....+.+. ++.-.+...+ .+++.++...+.-..+--.....+|-.+- .+.+|.+. .++++++.| .
T Consensus 93 ~--~v~~~~~~~-l~~~g~~~~~~~~rv~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~--~~P~lLlLD-----E 162 (271)
T PRK13638 93 T--DIDSDIAFS-LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV--LQARYLLLD-----E 162 (271)
T ss_pred H--HHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----C
T ss_conf 5--799999889-98869998999999999997539422230893559999999999999996--599989983-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
+... -+ .....+|..-|+.++.+ +..||..++ | -..+++-||-|++|+.
T Consensus 163 Ptag-LD--~~~~~~i~~ll~~l~~~-G~tiiivsH----------------d---l~~v~~~aDrv~vl~~ 211 (271)
T PRK13638 163 PTAG-LD--PAGRTQMIAIIRRIVAQ-GNHVIISSH----------------D---IDLIYEISDAVYVLRQ 211 (271)
T ss_pred CCCC-CC--HHHHHHHHHHHHHHHHC-CCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf 7545-89--99999999999999978-999999848----------------8---8999996999999989
No 157
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.97 E-value=0.044 Score=35.31 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=71.3
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH--HHHHCCCCCCCCCCCH
Q ss_conf 76213100276999999999985101112333332124797589995852179998789999--8741011000121376
Q gi|254780332|r 223 IIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE--QTEVPSSKIRRGELTR 300 (504)
Q Consensus 223 Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~--~s~I~~~~i~~g~l~~ 300 (504)
+....-|+|||++++++|...+. .|++|+++-.+- .+-..+|... ..+....... -...
T Consensus 6 ~~~~KGG~GKtT~a~~la~~~~~---------------~g~~v~~iD~Dp--q~s~~~W~e~a~~~~~~~~~~~--v~~~ 66 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALAS---------------DGKRVALFEADE--NRPLTRWKENALRSNTWDPACE--VYAA 66 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCC--CCCHHHHHHHHHHCCCCCCCCC--EEEC
T ss_conf 96189987699999999999997---------------899599996899--8688999987652589887752--3405
Q ss_pred HHHHHHHHHHHHH--HHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8899899999998--62780782589988999999886402244474677671353256644321137889999999999
Q gi|254780332|r 301 PDYEKIVACSQVM--QKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKA 378 (504)
Q Consensus 301 ~e~~~i~~a~~~l--~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~ 378 (504)
.+...+..+.+.. .+..+.|.|+|+ +.+.+.+.+-.. -|+|+|= +.++.-. -.+...+-+.++.
T Consensus 67 ~~~~~l~~~~e~~~~~~~D~VIIDtpg-~~s~~~~~Ai~~-----ADLVLIP----~qPSp~D----~~~a~~tv~~i~~ 132 (231)
T PRK13849 67 DELPLLEAAYEDAELQGFDYALADTHG-GSSELNNTIIAS-----SNLLLIP----TMLTPLD----IDEALSTYRYVIE 132 (231)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHH-----CCEEEEC----CCCCHHH----HHHHHHHHHHHHH
T ss_conf 652578999988753699889981899-775899999997-----8989977----9998667----9999999999999
Q ss_pred HHHHH--CCCEE
Q ss_conf 99882--79199
Q gi|254780332|r 379 LAKEL--NIPII 388 (504)
Q Consensus 379 lA~e~--~ipvi 388 (504)
+.+-. .||..
T Consensus 133 ~~~~~~~~ip~~ 144 (231)
T PRK13849 133 LLLSENLAIPTA 144 (231)
T ss_pred HHHHHCCCCCEE
T ss_conf 999728788656
No 158
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC. A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=96.96 E-value=0.014 Score=39.08 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
+.+|...||++. |||-.-.+++..|.+|.|||.+.-.+..++|.+ ..+..+|..|-+..|+..-
T Consensus 245 vssGv~~ld~mCGGGff~dsiil~tGatGtGktllvs~f~~~~C~n---------------~~railfayeesraql~rn 309 (484)
T TIGR02655 245 VSSGVKRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEDACKN---------------KERAILFAYEESRAQLLRN 309 (484)
T ss_pred EHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCC---------------CCCEEEEEEHHHHHHHHHC
T ss_conf 1000466643217851210356762577766055666788864146---------------7735888511346777523
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99998741011000
Q gi|254780332|r 281 IISEQTEVPSSKIR 294 (504)
Q Consensus 281 ~is~~s~I~~~~i~ 294 (504)
..| -|++...+.
T Consensus 310 ~~s--WG~dfe~~e 321 (484)
T TIGR02655 310 AYS--WGIDFEELE 321 (484)
T ss_pred CCC--CCCCHHHHC
T ss_conf 320--144378850
No 159
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.96 E-value=0.031 Score=36.46 Aligned_cols=158 Identities=19% Similarity=0.259 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHH---H
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958---52179998---7
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLA---T 279 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~---~ 279 (504)
...|+...--+.+|+++.|-|.+|+|||+| ||+.-...+. .+..|.|.-. .|+..+++ .
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTL-Lniig~ld~p--------------t~G~v~i~g~~~~~l~~~~~~~~R~ 82 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKP--------------TSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EEECCCCEEEECCCCEEEEECCCCCCHHHH-HHHHHCCCCC--------------CCCEEEECCEECCCCCHHHHHHHHH
T ss_conf 675246258874998999989999989999-9999646678--------------8846999988867589889999977
Q ss_pred HHHHHHH-------------HHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCEE--EE-CCC-CCCHHH--HHHHHHHHC
Q ss_conf 8999987-------------41011000121376889989999999862-7807--82-589-988999--999886402
Q gi|254780332|r 280 RIISEQT-------------EVPSSKIRRGELTRPDYEKIVACSQVMQK-LPLY--ID-QTG-GISMSQ--LATRARRLK 339 (504)
Q Consensus 280 R~is~~s-------------~I~~~~i~~g~l~~~e~~~i~~a~~~l~~-~~l~--I~-d~~-~~ti~~--I~~~~r~~~ 339 (504)
+-+..+. +|.+--+..+.... ...++...+-+ ..|. .. ..| .+|=.| =.+.+|.+.
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~----~~~~~~~~l~~~lgl~~~~~~~~p~~LSGGqqQRVAIARAL~ 158 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG----RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCCHHHHCCCCCHHCCHHHHHHHHHHHHHH
T ss_conf 7489987567778988899999869987478736----799999999986698123235881226979999999999982
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 24447467767135325664432113788999999999999882791999771
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
+.+++|+-| .|.++-.... -..|..-|+.++++.+..||+.+.
T Consensus 159 --~~P~iilAD-----EPTgnLD~~t---~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 159 --NNPKIILAD-----EPTGNLDSKT---AKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred --CCCCEEEEE-----CCCCCCCHHH---HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf --499869960-----7666588678---999999999998746989999908
No 160
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.96 E-value=0.021 Score=37.83 Aligned_cols=182 Identities=21% Similarity=0.213 Sum_probs=86.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124-----7975899958521799987899
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI-----NGGIVGFYSLEMSSEQLATRII 282 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~-----~g~~Vl~fSlEMs~~el~~R~i 282 (504)
.|+++---+.+|+.+.|.|..|.|||+|.-.++- .-........+....... -.+.+.|..-+ +..++...
T Consensus 16 ~L~~vsl~i~~Gei~~iiG~nGaGKSTLlk~i~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~-p~~~~~~~-- 91 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG-LLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN-PDDQFFGP-- 91 (211)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCCEEECCEECCCCCHHHHHCCEEEEEEC-CHHHCCCC--
T ss_conf 7753178884997999988999989999999964-6779888778999999979989984038999778-32530558--
Q ss_pred HHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCEE--EECC-CCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 9987410110001213768-899899999998627807--8258-9988999--99988640224447467767135325
Q gi|254780332|r 283 SEQTEVPSSKIRRGELTRP-DYEKIVACSQVMQKLPLY--IDQT-GGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 283 s~~s~I~~~~i~~g~l~~~-e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
+..-.|.+. ++....+.. ..+++.++.+.+ .+. -+.. ..+|-.+ -.+.+|.+. +++++++.| .
T Consensus 92 tv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSGGqkQrv~iAral~--~~P~ililD-----E 160 (211)
T cd03225 92 TVEEEVAFG-LENLGLPEEEIEERVEEALELV---GLEGLRDRSPFTLSGGQKQRVAIAGVLA--MDPDILLLD-----E 160 (211)
T ss_pred CHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----C
T ss_conf 699999999-9986999999999999999986---9946663895459998999999999997--599999997-----9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 66443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
|... -+- ..-..|..-|+.++++ +++||..++ | -..+++-||-|++++
T Consensus 161 PTsg-LD~--~~~~~i~~~l~~l~~~-g~tii~itH----------------d---l~~~~~~~dri~~m~ 208 (211)
T cd03225 161 PTAG-LDP--AGRRELLELLKKLKAE-GKTIIIVTH----------------D---LDLLLELADRVIVLE 208 (211)
T ss_pred CCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------------C---HHHHHHHCCEEEEEE
T ss_conf 8555-899--9999999999999978-999999925----------------9---999999799999982
No 161
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.013 Score=39.45 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 98899999--9886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
.+|-.+-+ +.+|.+. .+++++|.| .|.. .-+- ..-.+|.+-|+.|+++ ++.||..|.
T Consensus 405 ~LSGGq~QRv~iAraL~--~~P~iLilD-----EPT~-GLD~--~~~~~i~~ll~~l~~~-G~tvl~iSH---------- 463 (513)
T PRK13549 405 RLSGGNQQKAILAKCLL--LNPRILILD-----EPTR-GIDV--GAKYEIYKLINQLVQQ-GVAIIVISS---------- 463 (513)
T ss_pred CCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC-CCCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------
T ss_conf 39999999999999997--199899997-----9866-8999--9999999999999957-999999918----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
| -..+.+-||-|+.++.
T Consensus 464 ------D---l~~v~~~aDRV~Vm~~ 480 (513)
T PRK13549 464 ------E---LPEVLGLSDRVLVMHE 480 (513)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------6---8999986999999989
No 162
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.94 E-value=0.014 Score=39.10 Aligned_cols=180 Identities=20% Similarity=0.245 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHH--
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---85217999878--
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATR-- 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R-- 280 (504)
...+|.+---+++|+.+-|.|..|+|||+++..+.--..... .. ...|.|.- +.|+..++...
T Consensus 29 v~av~~Vsf~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~-----------~~-sG~I~~~G~~i~~~~~~~~~~~r~ 96 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG-----------RI-GGSATFNGREILNLPEKELNKLRA 96 (330)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-----------CE-EEEEEECCEECCCCCHHHHHHHHC
T ss_conf 898667476888998999986898779999999976888888-----------33-589999999866589999998630
Q ss_pred -HHHHHHHHC------CCCCC---------CCCCCHHHHHHHHHHHHHHHHCCE-----EEECCC-CCCHHHH--HHHHH
Q ss_conf -999987410------11000---------121376889989999999862780-----782589-9889999--99886
Q gi|254780332|r 281 -IISEQTEVP------SSKIR---------RGELTRPDYEKIVACSQVMQKLPL-----YIDQTG-GISMSQL--ATRAR 336 (504)
Q Consensus 281 -~is~~s~I~------~~~i~---------~g~l~~~e~~~i~~a~~~l~~~~l-----~I~d~~-~~ti~~I--~~~~r 336 (504)
-+++.-+=| ...+. ...++..+ ...++...+....+ .++..| .+|=.+- .+.+|
T Consensus 97 ~~I~~vfQdp~~sLnP~~~i~~~l~e~l~~~~~~~~~~--~~~~~~~lL~~v~l~~~~~~l~~yP~eLSGGq~QRV~IAr 174 (330)
T PRK09473 97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE--AFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM 174 (330)
T ss_pred CCEEEEEECCCHHCCCCCCHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 66799960750113841045665557898853899899--9999998888760721788873481533988999999999
Q ss_pred HHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 40224447467767135325664432113788999999999999882791999771382201689999840101432422
Q gi|254780332|r 337 RLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSI 416 (504)
Q Consensus 337 ~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~I 416 (504)
.+. .+++++|.| .+... -+- ..-.+|.+-|+.|.+|+++.++..|. | =+.+
T Consensus 175 AL~--~~P~lLI~D-----EPTsa-LDv--~~q~~Il~ll~~l~~e~g~til~ITH----------------D---l~~v 225 (330)
T PRK09473 175 ALL--CRPKLLIAD-----EPTTA-LDV--TVQAQIMTLLNELKREFNTAIIMITH----------------D---LGVV 225 (330)
T ss_pred HHH--CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCCEEEECC----------------C---HHHH
T ss_conf 997--099999973-----87554-799--99999999999999974994799828----------------8---9999
Q ss_pred HHHCCEEEEEEC
Q ss_conf 331387889725
Q gi|254780332|r 417 EQDADVVLFVIR 428 (504)
Q Consensus 417 EqdAD~v~~l~R 428 (504)
.+-||-|+.+|.
T Consensus 226 ~~~~DrI~VMy~ 237 (330)
T PRK09473 226 AGICDKVLVMYA 237 (330)
T ss_pred HHHCCEEEEEEC
T ss_conf 986998999989
No 163
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.94 E-value=0.0023 Score=45.04 Aligned_cols=66 Identities=29% Similarity=0.339 Sum_probs=46.3
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 6416772677621310027699999999998510111233333212479758999585217999878999987410
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVP 289 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~ 289 (504)
.|=..|.-+.++|.||.||||+|+-+|...-...+... =..-=+||+||++.|.....+-..-||-
T Consensus 60 ~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~----------isgsEiYS~E~kKTE~L~qa~RraIGvr 125 (450)
T COG1224 60 QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA----------ISGSEIYSLEVKKTEALTQALRRAIGVR 125 (450)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE----------ECCCEEEEECCCHHHHHHHHHHHHHCEE
T ss_conf 17666617999789997688999999998589998215----------0133223310008899999999864548
No 164
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0011 Score=47.49 Aligned_cols=192 Identities=14% Similarity=0.154 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------CC-CCCCEEEEEECCC
Q ss_conf 3210137765564167726776213100276999999999985101112333332---------12-4797589995852
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY---------KT-INGGIVGFYSLEM 272 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~---------~~-~~g~~Vl~fSlEM 272 (504)
|..++.||++---+.+|+.+.|-|..|+||||++..++- ............... .. .-.+.|.+.-- -
T Consensus 21 ~~~~~AL~~vsl~i~~Ge~~aIiG~nGsGKSTL~~~l~G-ll~p~~G~v~~~~~~i~~~~~~~~~~~~~r~~vG~vfQ-~ 98 (289)
T PRK13645 21 PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG-LIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQ-F 98 (289)
T ss_pred CCCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEECCEECCCCCCCHHHHHHHHCCEEEEEE-C
T ss_conf 883658653288988998999999999579999999965-98899985999999834765315578997636799966-7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCEEEECCC-CCCHHHHH--HHHHHHCCCCCCCEEE
Q ss_conf 1799987899998741011000121376-889989999999862780782589-98899999--9886402244474677
Q gi|254780332|r 273 SSEQLATRIISEQTEVPSSKIRRGELTR-PDYEKIVACSQVMQKLPLYIDQTG-GISMSQLA--TRARRLKRQRGLDLLI 348 (504)
Q Consensus 273 s~~el~~R~is~~s~I~~~~i~~g~l~~-~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~--~~~r~~~~~~gi~~vv 348 (504)
+..++...-+ .-.|.+.-...| .+. +..+++.++.+.+.=..-|.+..| .+|=.+-+ +.++.+. ..+++++
T Consensus 99 P~~qlf~~tV--~~~iafg~~n~g-~~~~e~~~rv~~~l~~v~L~~~~~~~~p~~LSGGqkqRVaiA~aLa--~~P~iLi 173 (289)
T PRK13645 99 PEYQLFQETI--EKDIAFGPVNLG-ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA--MDGNTLV 173 (289)
T ss_pred CCCCCCHHHH--HHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCEEE
T ss_conf 7646266379--999986798769-9999999999999987699866741890109999999999999996--3999999
Q ss_pred ECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 67135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 349 VDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 349 IDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.| .+.. .-+. ..-.+|.+-++.|.++.++.||..++ | -..+.+-||-|+.|+.
T Consensus 174 lD-----EPTa-gLDp--~~~~~i~~ll~~L~~~~g~Tvi~vtH----------------d---m~~v~~~aDrviVm~~ 226 (289)
T PRK13645 174 LD-----EPTG-GLDP--KGEEDFINLFERLNKEYKKRIIMVTH----------------N---MDQVLRIADEVIVMHE 226 (289)
T ss_pred EE-----CCCC-CCCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf 95-----8876-4898--99999999999999956999999915----------------9---9999997999999989
No 165
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.93 E-value=0.018 Score=38.31 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHH
Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585---21799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~i 282 (504)
.+.|+++---+.+|+++.|.|+-|.|||++.--++ ..... +...|.+.--. ++..+...+-+
T Consensus 13 ~~~L~~vs~~v~~Gei~~liGpNGaGKSTL~~~i~-Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~r~gi 77 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM-GLLPV--------------KSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCE
T ss_conf 66888717799999799999999940999999997-79999--------------9549999999999999899998295
Q ss_pred HHHHH-------------HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC-CCCCCHHHH--HHHHHHHCCCCCCCE
Q ss_conf 99874-------------10110001213768899899999998627807825-899889999--998864022444746
Q gi|254780332|r 283 SEQTE-------------VPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQ-TGGISMSQL--ATRARRLKRQRGLDL 346 (504)
Q Consensus 283 s~~s~-------------I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~~ 346 (504)
+...+ +-+..-..+.....-++++.+....+.+. .+- ...+|-.+- .+.+|.+. ..+++
T Consensus 78 g~v~Q~~~lf~~lTV~Enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~r~~~~LSGGq~Qrv~iAraL~--~~P~l 152 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM---LGRRGGDLSGGQQQQLAIARALV--TRPKL 152 (230)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HHCCHHHCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 99377742576788999999999874966788999999999999999---83851119999999999999996--29988
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .|... -+ .....+|.+-|+.|+++.++.|+..++ | -..+.+-||-|++|
T Consensus 153 LlLD-----EPt~g-LD--~~~~~~i~~~i~~l~~~~g~tvl~vtH----------------~---l~~~~~~adrv~vl 205 (230)
T TIGR03410 153 LLLD-----EPTEG-IQ--PSIIKDIGRVIRRLRAEGGMAILLVEQ----------------Y---LDFARELADRYYVM 205 (230)
T ss_pred EEEE-----CCCCC-CC--HHHHHHHHHHHHHHHHCCCCEEEEEEC----------------C---HHHHHHHCCEEEEE
T ss_conf 9993-----85226-99--999999999999999717989999908----------------8---89999969999999
Q ss_pred EC
Q ss_conf 25
Q gi|254780332|r 427 IR 428 (504)
Q Consensus 427 ~R 428 (504)
++
T Consensus 206 ~~ 207 (230)
T TIGR03410 206 ER 207 (230)
T ss_pred EC
T ss_conf 59
No 166
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.92 E-value=0.01 Score=40.11 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
-|+.+---+++|+++.|-|.-|.|||+|.-.++
T Consensus 17 ~L~~Vsl~I~~GEi~gLIGPNGAGKSTLLk~I~ 49 (409)
T PRK09536 17 ILDGVDLSVREGHLVGVVGPNGAGKTTLLRAMN 49 (409)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 892508898899899999998727999999996
No 167
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.92 E-value=0.0062 Score=41.82 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995852179998789999
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE 284 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~ 284 (504)
.+..||++.--+.+|+.+-|.|+.|.|||++.--+ ....................-+..+ .|-.+|+..|.. ++.+.
T Consensus 34 ~~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i-~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~p~ltv~enl-~~~~~ 110 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL-AGIYPPDSGTVTVRGRVSSLLGLGG-GFNPELTGRENI-YLNGR 110 (224)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCCEEEECCEECCCCCCCE-ECCCCCCHHHHH-HHHHH
T ss_conf 96987670789838989999979998199999999-7587778776999989843015742-039988299999-99999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCC
Q ss_conf 874101100012137688998999999986278078258-998899999--98864022444746776713532566443
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKI 361 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~ 361 (504)
..+++.... ..++.+..+ +.++.=+.+.. ..+|-.+-+ +.++.+. +.+++++.| .+.. .
T Consensus 111 ~~g~~~~~~---------~~~~~~~l~-~~~L~~~~~~~~~~LSgG~kqRl~iA~al~--~~P~illLD-----EPt~-g 172 (224)
T cd03220 111 LLGLSRKEI---------DEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATA--LEPDILLID-----EVLA-V 172 (224)
T ss_pred HCCCCHHHH---------HHHHHHHHH-HHCCHHHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC-C
T ss_conf 829658999---------999999998-636755653866546999999999999996--699999991-----8866-5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 2113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 362 EENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
-+. .....+.+.++.++++ +..||..|+- -..+|+-||-|++|+.
T Consensus 173 LD~--~~~~~i~~~i~~l~~~-g~tiii~sH~-------------------l~~v~~lcdriivl~~ 217 (224)
T cd03220 173 GDA--AFQEKCQRRLRELLKQ-GKTVILVSHD-------------------PSSIKRLCDRALVLEK 217 (224)
T ss_pred CCH--HHHHHHHHHHHHHHHC-CCEEEEECCC-------------------HHHHHHHCCEEEEEEC
T ss_conf 699--9999999999999858-9999998898-------------------8999996999999989
No 168
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0083 Score=40.83 Aligned_cols=178 Identities=21% Similarity=0.277 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHH--HH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958---52179998--78
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLA--TR 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~--~R 280 (504)
...||++---+.+|+.+.|.|.+|+|||+++.-++- .-.. ....|.|.-- .++..+.- .|
T Consensus 25 ~~~l~~vs~~i~~GE~l~ivGeSGsGKSTL~r~i~g-l~~p--------------~sG~I~~~g~~l~~~~~~~~~~~rr 89 (266)
T PRK10419 25 QAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVG-LESP--------------SQGNISWRGEPLAKLNRAQRKAFRR 89 (266)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 688858175888998999999999779999999966-9999--------------9629988999567589999999754
Q ss_pred HHHHHHH-----H-CCCC--------CC-CCCCCHHHH-HHHHHHHHHHHHCCE-EEECCC-CCCHHHH--HHHHHHHCC
Q ss_conf 9999874-----1-0110--------00-121376889-989999999862780-782589-9889999--998864022
Q gi|254780332|r 281 IISEQTE-----V-PSSK--------IR-RGELTRPDY-EKIVACSQVMQKLPL-YIDQTG-GISMSQL--ATRARRLKR 340 (504)
Q Consensus 281 ~is~~s~-----I-~~~~--------i~-~g~l~~~e~-~~i~~a~~~l~~~~l-~I~d~~-~~ti~~I--~~~~r~~~~ 340 (504)
-+++.-+ . |... ++ ...++..+. +++.+..+.+ +++- +.+..| .+|=.+- .+.+|.+.
T Consensus 90 ~i~~VfQ~~~~slnP~~tv~~~i~epl~~~~~~~~~~~~~~~~~~L~~v-gL~~~~~~~yP~eLSGGq~QRVaIArAL~- 167 (266)
T PRK10419 90 DIQMVFQDSISAVNPRKTVREILREPLRHLLSLDKAERLARASEMLKAV-DLDDSVLDKRPPQLSGGQLQRVCLARALA- 167 (266)
T ss_pred CCEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCCHHHHHCCHHHCCHHHHHHHHHHHHHC-
T ss_conf 7389973913636816489999999999814999999999999999874-99889871784337927877789866640-
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 44474677671353256644321137889999999999998827919997713822016899998401014324223313
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
..+++++.| .+.+. -+-..+ .+|..-||.+.+++++.+|..+. || +.+.+-|
T Consensus 168 -~~P~lLi~D-----EPtsa-LD~~~q--~~il~ll~~l~~~~g~t~i~ITH----------------Dl---~~a~~~a 219 (266)
T PRK10419 168 -VEPKLLILD-----EAVSN-LDLVLQ--AGVIRLLKKLQQQFGTACLFITH----------------DL---RLVERFC 219 (266)
T ss_pred -CCCCEEEEE-----CCCCC-CCHHHH--HHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHC
T ss_conf -698789996-----88653-699999--99999999999975989999889----------------99---9999968
Q ss_pred CEEEEEEC
Q ss_conf 87889725
Q gi|254780332|r 421 DVVLFVIR 428 (504)
Q Consensus 421 D~v~~l~R 428 (504)
|-|+.+|.
T Consensus 220 dri~Vm~~ 227 (266)
T PRK10419 220 QRVMVMDN 227 (266)
T ss_pred CEEEEEEC
T ss_conf 98999989
No 169
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.015 Score=38.95 Aligned_cols=179 Identities=22% Similarity=0.250 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHH--
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---85217999878--
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATR-- 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R-- 280 (504)
.+.+|.+---+.+|+.+-|.|.+|+|||+++.-++.- . ...+..|.|.. +.++..+...+
T Consensus 28 v~Av~~Vsl~i~~GE~lgiVGeSGsGKSTL~~~l~gl-~--------------~p~~G~I~~~G~dl~~~~~~~~~~~r~ 92 (327)
T PRK11308 28 VKALDGVSFNLERGKTLAVVGESGCGKSTLARLLTMI-E--------------TPTGGELYYQGQDLLKADPEAQKLLRR 92 (327)
T ss_pred EEEECCEEEEECCCCEEEEECCCCHHHHHHHHHHHCC-C--------------CCCCCEEEECCEECCCCCHHHHHHHHC
T ss_conf 8885060679889999999999831999999999569-9--------------988637998999557799999999755
Q ss_pred HHHHHHHHCC------CCC--------C-CCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCCHHHHH--HHHHHHCCC
Q ss_conf 9999874101------100--------0-121376889-989999999862780782589-98899999--988640224
Q gi|254780332|r 281 IISEQTEVPS------SKI--------R-RGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GISMSQLA--TRARRLKRQ 341 (504)
Q Consensus 281 ~is~~s~I~~------~~i--------~-~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~--~~~r~~~~~ 341 (504)
-+++.-+=|+ ..+ + ...++..+. +++.+....+.=.+-+.+-.| .+|=.+-+ +.+|.+.
T Consensus 93 ~i~~VfQ~p~~sLnP~~~v~~~l~e~l~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~ryP~eLSGGq~QRv~IArAL~-- 170 (327)
T PRK11308 93 KVQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM-- 170 (327)
T ss_pred CEEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 779998686343380342434335778861489999999999999987045665664576447999999999999984--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
.+++++|.| .+... -+-.. -.+|-.-|+.|.+++++.+|..+. | =+.+.+-||
T Consensus 171 ~~P~lLi~D-----EPTsa-LD~~~--q~~Il~ll~~l~~~~~~t~l~ITH----------------D---l~~v~~iaD 223 (327)
T PRK11308 171 LDPDVVVAD-----EPVSA-LDVSV--QAQVLNLMMDLQQELGLSYVFISH----------------D---LSVVEHIAD 223 (327)
T ss_pred CCCCEEEEE-----CCCCC-CCHHH--HHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCC
T ss_conf 289899984-----78654-69999--999999999999700976999869----------------8---999998699
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
-|+.||.
T Consensus 224 ri~VMy~ 230 (327)
T PRK11308 224 DVMVMYL 230 (327)
T ss_pred EEEEEEC
T ss_conf 8999989
No 170
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.022 Score=37.66 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=85.8
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-----------
Q ss_conf 167726776213100276999999999985101112333332124797589995852179998789999-----------
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE----------- 284 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~----------- 284 (504)
+.+|+.+.|-|.+|+||||+.- +........ ...|.+..-+.+......|-++.
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~-li~Gl~~p~--------------sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~l 85 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLN-LIAGFETPQ--------------SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHH-HHHCCCCCC--------------CEEEEECCEECCCCCHHHCCEEEEECCCCCCCCC
T ss_conf 8899899999999955999999-997699988--------------5299999999999998898679995388668999
Q ss_pred --HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf --8741011000121376889989999999862780782589-988--99999988640224447467767135325664
Q gi|254780332|r 285 --QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 285 --~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
.-+|.+..-......+++.+++.++.+.+. +.-+.+-.| .+| -.+=.+.+|.+. ..+++++.| .|..
T Consensus 86 tV~eNi~~~l~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~p~~LSGGqkQRvaiARAL~--~~P~ilLlD-----EPts 157 (211)
T cd03298 86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVG-LAGLEKRLPGELSGGERQRVALARVLV--RDKPVLLLD-----EPFA 157 (211)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCC
T ss_conf 49999875886468882999999999998769-987872894558989999999999986--599999971-----8876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 43211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
. -+. .--.++...++.+.++.+++||..+. |+ ..+..-||-|++|+
T Consensus 158 ~-LD~--~~~~~l~~~l~~l~~~~~~Tvi~vTH----------------d~---~ea~~~adriivl~ 203 (211)
T cd03298 158 A-LDP--ALRAEMLDLVLDLHAETKMTVLMVTH----------------QP---EDAKRLAQRVVFLD 203 (211)
T ss_pred C-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEEEE
T ss_conf 5-598--99999999999999974998999988----------------99---99999699999998
No 171
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=96.89 E-value=0.0044 Score=42.92 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=39.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRI 281 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~ 281 (504)
-+.|-.+.||-|||+.+.|+|..+|. .|++|+++-..|-+-.+..++
T Consensus 533 vi~vTS~~pgEGKSt~a~nLA~~~A~---------------~G~rvLLID~DlRrp~l~~~~ 579 (726)
T PRK09841 533 ILMITGATPDSGKTFVSSTLAAVIAQ---------------SDQKVLFIDADLRRGYSHNLF 579 (726)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH---------------CCCEEEEECCCCCCCCHHHHC
T ss_conf 89997799999779999999999984---------------799599982887771077615
No 172
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.024 Score=37.28 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=86.3
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCC
Q ss_conf 6416772677621310027699999999998510111233333212479758999585217-999878999987410110
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPSSK 292 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~~~ 292 (504)
+||.+ +++.|-||.|||-+-++.+..+. .+|+.|++.=.|-+- .|+..|+-+... .+...
T Consensus 215 ~~~~~---~Ll~GvTGSGKTEvYl~~i~~~L---------------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~v 275 (730)
T COG1198 215 GGFAP---FLLDGVTGSGKTEVYLEAIAKVL---------------AQGKQVLVLVPEIALTPQLLARFKARFG-AKVAV 275 (730)
T ss_pred CCCCC---EEEECCCCCCHHHHHHHHHHHHH---------------HCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHH
T ss_conf 56665---36767778858999999999999---------------7598799995653456999999999867-87453
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCH--HHHHHH
Q ss_conf 001213768899899999998627807825899889999998864022444746776713532566443211--378899
Q gi|254780332|r 293 IRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEEN--RVLEIT 370 (504)
Q Consensus 293 i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~--r~~~i~ 370 (504)
+.+ .|++.+....+..+.. .+..+.|--.+.+ +.--.++++||||==+ .++.+..+ ||.+-
T Consensus 276 lHS-~Ls~~er~~~W~~~~~-G~~~vVIGtRSAl-----------F~Pf~~LGLIIvDEEH---D~sYKq~~~prYhAR- 338 (730)
T COG1198 276 LHS-GLSPGERYRVWRRARR-GEARVVIGTRSAL-----------FLPFKNLGLIIVDEEH---DSSYKQEDGPRYHAR- 338 (730)
T ss_pred HCC-CCCHHHHHHHHHHHHC-CCCEEEEEECHHH-----------CCCHHHCCEEEEECCC---CCCCCCCCCCCCCHH-
T ss_conf 146-5792789999999855-9715999712233-----------0723125769970245---643247777776789-
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999999882791999771
Q gi|254780332|r 371 GITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 371 ~is~~lK~lA~e~~ipvi~lsQ 392 (504)
+++ -..|+..+||||+-|=
T Consensus 339 dvA---~~Ra~~~~~pvvLgSA 357 (730)
T COG1198 339 DVA---VLRAKKENAPVVLGSA 357 (730)
T ss_pred HHH---HHHHHHCCCCEEEECC
T ss_conf 999---9998860998898268
No 173
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.016 Score=38.74 Aligned_cols=188 Identities=12% Similarity=0.136 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---------CCCCEEE-EEECC
Q ss_conf 4321013776556416772677621310027699999999998510111233333212---------4797589-99585
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT---------INGGIVG-FYSLE 271 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~---------~~g~~Vl-~fSlE 271 (504)
-|.+.+.|+++.--+.+|+++.|-|..|.|||||+..++-- ................ .-...|. .|.
T Consensus 15 ~p~~~~aL~dIsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gl-l~p~~G~V~~~~~~i~~~~~~~~~~~~~~~vG~VfQ-- 91 (288)
T PRK13643 15 SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ-- 91 (288)
T ss_pred CCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCCEEEECCEECCCCCHHHHHHHHHHCEEEEEE--
T ss_conf 98727336633679859989999999994799999999748-888885699999985687735447987751799997--
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHCCEE--EEC-CC-CCCHHHHH--HHHHHHCCCCCC
Q ss_conf 2179998789999874101100012137688998-99999998627807--825-89-98899999--988640224447
Q gi|254780332|r 272 MSSEQLATRIISEQTEVPSSKIRRGELTRPDYEK-IVACSQVMQKLPLY--IDQ-TG-GISMSQLA--TRARRLKRQRGL 344 (504)
Q Consensus 272 Ms~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~-i~~a~~~l~~~~l~--I~d-~~-~~ti~~I~--~~~r~~~~~~gi 344 (504)
.+..|+....+ .-.|.+. .++-.++.++.++ +.++.+. ..|. +.| .| .+|=.+-+ +.++.+. ..+
T Consensus 92 ~p~~ql~~~tV--~e~vafg-~~n~g~~~~e~~~~v~~~l~~---vgl~d~~~~r~p~~LSGGqkqRvaiA~aLa--~~P 163 (288)
T PRK13643 92 FPESQLFEETV--LKDVAFG-PQNFGIPKEKAEKIAAEKLEM---VGLADEFWEKSPFELSGGQMRRVAIAGILA--MEP 163 (288)
T ss_pred CCCCCCCHHHH--HHHHHHH-HHHCCCCHHHHHHHHHHHHHH---CCCHHHHHHCCCCCCCHHHHHHHHHHHHHH--CCC
T ss_conf 77320243369--9999989-998699989999999999997---599366752797639999999999999997--499
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .+... -+. ..-.++..-+|.|.+ -+..||..++ | -..+.+-||-|+
T Consensus 164 ~vLlLD-----EPTs~-LDp--~~~~~i~~ll~~l~~-~G~TiI~vtH----------------d---~~~v~~~adrvi 215 (288)
T PRK13643 164 EVLVLD-----EPTAG-LDP--KARIEMMQLFESIHQ-SGQTVVLVTH----------------L---MDDVADYADYVY 215 (288)
T ss_pred CEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHH-CCCEEEEECC----------------C---HHHHHHHCCEEE
T ss_conf 999995-----88555-899--999999999999995-3999999860----------------8---999999799999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
.|+.
T Consensus 216 vl~~ 219 (288)
T PRK13643 216 LLEK 219 (288)
T ss_pred EEEC
T ss_conf 9989
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=96.88 E-value=0.053 Score=34.70 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 772677621310027699999999998510111233333212479758999585217--999878999987410110001
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS--EQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~--~el~~R~is~~s~I~~~~i~~ 295 (504)
+-.++.+.|--|.||||.+--+|...-. .+|++|++.++.--+ .-=..+.++...+||...-..
T Consensus 99 ~p~VIm~vGLqGsGKTTT~aKLA~~lk~--------------k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~ 164 (453)
T PRK10867 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE--------------KHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164 (453)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 9969999746888518589999999997--------------38983798558877058999999999851980436788
Q ss_pred CCCCHHHHHHHHHHHHHH--HHCCEEEECCCCC-CHH-HHHHHHHHHCCCCCCC--EEEECCHHHCCCCCCCCCHHHHHH
Q ss_conf 213768899899999998--6278078258998-899-9999886402244474--677671353256644321137889
Q gi|254780332|r 296 GELTRPDYEKIVACSQVM--QKLPLYIDQTGGI-SMS-QLATRARRLKRQRGLD--LLIVDYIQLMTTSKKIEENRVLEI 369 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l--~~~~l~I~d~~~~-ti~-~I~~~~r~~~~~~gi~--~vvIDYLqli~~~~~~~~~r~~~i 369 (504)
+. ++. .-..+++... .++.+.|.||++- .++ ++...+.++++.-.++ +.|+|-. .+ |+.
T Consensus 165 ~~-dp~--~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~--------~G----Q~a 229 (453)
T PRK10867 165 GQ-KPV--DIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAM--------TG----QDA 229 (453)
T ss_pred CC-CHH--HHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECC--------CC----HHH
T ss_conf 99-889--9999999999977999999978760121088899999998763787137974322--------35----668
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999999988279199977138
Q gi|254780332|r 370 TGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 370 ~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
- ...+.+-..+++--|.|+-|-
T Consensus 230 ~---~~a~~F~~~~~~~gvIlTKlD 251 (453)
T PRK10867 230 A---NTAKAFNEALPLTGVVLTKVD 251 (453)
T ss_pred H---HHHHHHHHHCCCCEEEEECCC
T ss_conf 9---999999985598707875046
No 175
>PRK09183 transposase/IS protein; Provisional
Probab=96.88 E-value=0.0015 Score=46.44 Aligned_cols=40 Identities=33% Similarity=0.582 Sum_probs=34.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 1677267762131002769999999999851011123333321247975899958
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL 270 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl 270 (504)
+..++=+|+.|.||+|||.+|..++..++. +|++|.||+.
T Consensus 98 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~---------------~G~~v~f~~~ 137 (258)
T PRK09183 98 IERNENIVLLGPSGVGKTHLAIALGYEAVR---------------AGIKVRFTTA 137 (258)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH
T ss_conf 655886799899998689999999999998---------------7993999789
No 176
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.87 E-value=0.026 Score=37.04 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCEEEEEECC------CCHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124----79758999585------2179
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI----NGGIVGFYSLE------MSSE 275 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~----~g~~Vl~fSlE------Ms~~ 275 (504)
...|+.+-.-+++|+++.+-|+.|.|||++.--+ .................... -...|.|..-+ |+..
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l-~Gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lTv~ 96 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKIL-AGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHH-HCCCCCCCEEEEECCCCCCCCHHHHHCEEEEEECCCCCCCCCCHH
T ss_conf 7888604999828959999899999899999999-679778864999958627512676505299994787777147599
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEE-C--CCCCCHHHHHHHHHHHCCCCCCCEEEECCH
Q ss_conf 9987899998741011000121376889989999999862780782-5--899889999998864022444746776713
Q gi|254780332|r 276 QLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID-Q--TGGISMSQLATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 276 el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~-d--~~~~ti~~I~~~~r~~~~~~gi~~vvIDYL 352 (504)
|... +.+...+.+. ....+++.+..+.+ .|.-. + ...+|-.+-+...-...--+.++++|.|
T Consensus 97 e~l~-~~~~l~~~~~---------~~~~~~~~~~l~~~---~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD-- 161 (293)
T COG1131 97 ENLE-FFARLYGLSK---------EEAEERIEELLELF---GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD-- 161 (293)
T ss_pred HHHH-HHHHHHCCCH---------HHHHHHHHHHHHHC---CCCCHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf 9999-9999849971---------66799999999986---9960328810237988999999999996699999996--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 53256644321137889999999999998827919997713822016899998401014324223313878897255
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
.|.. .-+ .....++.+-|+.++++-++.|+.-|+.- ..+|+-+|.|+++++-
T Consensus 162 ---EPt~-GLD--p~~~~~~~~~l~~l~~~g~~tvlissH~l-------------------~e~~~~~d~v~il~~G 213 (293)
T COG1131 162 ---EPTS-GLD--PESRREIWELLRELAKEGGVTILLSTHIL-------------------EEAEELCDRVIILNDG 213 (293)
T ss_pred ---CCCC-CCC--HHHHHHHHHHHHHHHHCCCCEEEEECCCH-------------------HHHHHHCCEEEEEECC
T ss_conf ---9977-879--99999999999999967995999983886-------------------9999868999999899
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.85 E-value=0.045 Score=35.23 Aligned_cols=185 Identities=20% Similarity=0.217 Sum_probs=88.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585---2179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~is~ 284 (504)
-|+++---+.+|+++.|-|+.|.|||+|.--++-.. ...-.+ .....+| .|.+...+ ++..++.. ..+.
T Consensus 16 vL~~vsl~i~~Ge~~aliG~nGaGKSTLl~~i~G~l-~~~~~~-----~g~~~~G-~i~~~g~~i~~~~~~~~~~-~~~~ 87 (273)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKVLAGEL-TGGGAP-----RGVRVTG-DVALNGEPLAAIDAPRLAR-LRAV 87 (273)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCC-----CCCEEEE-EEEECCEECCCCCHHHHHH-HHEE
T ss_conf 997608899899899999999976999999995678-876566-----7752477-9999999855399999977-4258
Q ss_pred ------------------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCC---
Q ss_conf ------------------874101100012137688998999999986278078258998899999--988640224---
Q gi|254780332|r 285 ------------------QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQ--- 341 (504)
Q Consensus 285 ------------------~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~--- 341 (504)
.+..+.. -+.+.....+.+...++...+.-..+.-.+...+|-.+-+ +.+|.+.+.
T Consensus 88 ~~q~~~~~~~~~v~~~v~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~LSGGq~qRv~iAraL~~l~~~ 166 (273)
T PRK13547 88 LPQAAQPAFPFSVDEIVLLGRYPHA-RRAGALTHRDREIAWQALARAGATALVGRDVTTLSGGELARVQFARVLAQLWPP 166 (273)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6432455567759999985122332-202411489999999999864975452787112699999999999999851011
Q ss_pred -----CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf -----447467767135325664432113788999999999999882791999771382201689999840101432422
Q gi|254780332|r 342 -----RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSI 416 (504)
Q Consensus 342 -----~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~I 416 (504)
.++++++.| .+... -+. ....+|..-++.|++|.++.|+..++ | -..+
T Consensus 167 ~~al~~~P~lLlLD-----EPts~-LD~--~~~~~i~~~l~~l~~e~g~tvl~vtH----------------d---l~~~ 219 (273)
T PRK13547 167 DPGAAQPPRYLLLD-----EPTAA-LDL--AHQHRLLDTVRRLAREWNLGVLAIVH----------------D---PNLA 219 (273)
T ss_pred CCCCCCCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEEEC----------------C---HHHH
T ss_conf 10136898689972-----87444-899--99999999999999837989999988----------------9---9999
Q ss_pred HHHCCEEEEEEC
Q ss_conf 331387889725
Q gi|254780332|r 417 EQDADVVLFVIR 428 (504)
Q Consensus 417 EqdAD~v~~l~R 428 (504)
.+-||-|++|+.
T Consensus 220 ~~~aDri~vL~~ 231 (273)
T PRK13547 220 ARHADRIAMLAD 231 (273)
T ss_pred HHHCCEEEEEEC
T ss_conf 997999999989
No 178
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.028 Score=36.77 Aligned_cols=178 Identities=19% Similarity=0.257 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521---799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS---SEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs---~~el~~R~i 282 (504)
...|+++.--+++|+.+.|.|+.|.|||||.-.++- ... .....|.|.--++. ..++..+.+
T Consensus 18 ~~~L~~isl~i~~Gei~~liG~NGaGKSTLl~~i~G-~~~--------------~~~G~I~~~G~~i~~~~~~~~~r~~i 82 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG-DPR--------------ATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--------------CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 888811278986997999987999759999999967-998--------------89628999999888799899987064
Q ss_pred HHHHH---H-C---C-CCCCCC-CC-CHHHH-HHHHHHHHHHHHCCEEEEC-CCCCCHHHH--HHHHHHHCCCCCCCEEE
Q ss_conf 99874---1-0---1-100012-13-76889-9899999998627807825-899889999--99886402244474677
Q gi|254780332|r 283 SEQTE---V-P---S-SKIRRG-EL-TRPDY-EKIVACSQVMQKLPLYIDQ-TGGISMSQL--ATRARRLKRQRGLDLLI 348 (504)
Q Consensus 283 s~~s~---I-~---~-~~i~~g-~l-~~~e~-~~i~~a~~~l~~~~l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~~vv 348 (504)
+.... + + . ..+.-+ .+ ...++ +++.+..+.+..+.-+-.. ...+|-.+- .+.+|.+. .++++++
T Consensus 83 ~~vpq~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~--~~P~lLl 160 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM--SQPRLLL 160 (237)
T ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEE
T ss_conf 78355664577788999987510137867899999999986555567654422348998859999999985--6999999
Q ss_pred ECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 67135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 349 VDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 349 IDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.| .|...- + .....+|..-++.++++ ++.||..++ +-..+++-||-|++|+.
T Consensus 161 LD-----EPt~gL-D--~~~~~~i~~~l~~l~~~-g~tii~vsH-------------------~l~~~~~~aDrv~vl~~ 212 (237)
T PRK11614 161 LD-----EPSLGL-A--PIIIQQIFDTIEQLREQ-GMTIFLVEQ-------------------NANQALKLADRGYVLEN 212 (237)
T ss_pred EE-----CCCCCC-C--HHHHHHHHHHHHHHHHC-CCEEEEEEC-------------------CHHHHHHHCCEEEEEEC
T ss_conf 95-----975579-9--99999999999999967-999999947-------------------58999996999999979
No 179
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.84 E-value=0.022 Score=37.61 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=81.0
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCEEEEEEC---------CCCHHHHHHH
Q ss_conf 167726776213100276999999999985101112333332124------7975899958---------5217999878
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI------NGGIVGFYSL---------EMSSEQLATR 280 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~------~g~~Vl~fSl---------EMs~~el~~R 280 (504)
+++|+.+.|.|..|.|||+|+--++--. ................ -...+.|++- .|+..+....
T Consensus 275 v~~GEi~gi~G~nGsGKsTL~~~l~Gl~-~~~~G~v~~~G~~i~~~~~~~~~~~~i~~v~~dr~~~~l~~~~sv~en~~~ 353 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEECCCCCHHHHHHCCCCEECHHHHHCCCCCCCCHHHHHHH
T ss_conf 6688189966788876889999981876-777776999999888779899986178445123331476678809998878
Q ss_pred HHHHHHHHCCCCCCC--CCCCHH-HHHHHHHHHHHHHHCCE---EEECCC-CCCHHHHH--HHHHHHCCCCCCCEEEECC
Q ss_conf 999987410110001--213768-89989999999862780---782589-98899999--9886402244474677671
Q gi|254780332|r 281 IISEQTEVPSSKIRR--GELTRP-DYEKIVACSQVMQKLPL---YIDQTG-GISMSQLA--TRARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 281 ~is~~s~I~~~~i~~--g~l~~~-e~~~i~~a~~~l~~~~l---~I~d~~-~~ti~~I~--~~~r~~~~~~gi~~vvIDY 351 (504)
.. ...+.+ +.+... +...+.+. +....+ ..+..+ .+|-.+-+ +.+|.+. .++++++.|
T Consensus 354 --~~-----~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~~LSGGq~Qrv~iAraL~--~~p~lLilD- 420 (501)
T PRK10762 354 --TA-----LDYFSRAGGSLKHADEQQAVSDF---IRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM--TRPKVLILD- 420 (501)
T ss_pred --HH-----HHHHHHHCCCCCHHHHHHHHHHH---HHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-
T ss_conf --87-----88653301325789999999999---975288630011770209999999999999997--299889997-
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 35325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 352 IQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 352 Lqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|.. .-+ ...-.+|..-|+.++.+ ++.||+.|. | -..+.+-||-|+.++.
T Consensus 421 ----EPT~-GLD--~~~~~~i~~ll~~l~~~-G~til~isH----------------D---l~~v~~~aDRv~vm~~ 470 (501)
T PRK10762 421 ----EPTR-GVD--VGAKKEIYQLINQFKAD-GLSIILVSS----------------E---MPEVLGMSDRIIVMHE 470 (501)
T ss_pred ----CCCC-CCC--HHHHHHHHHHHHHHHHC-CCEEEEEEC----------------C---HHHHHHHCCEEEEEEC
T ss_conf ----9866-899--99999999999999967-999999918----------------6---8999986999999969
No 180
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.83 E-value=0.032 Score=36.33 Aligned_cols=173 Identities=17% Similarity=0.273 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
.|+++--=+.+|+.+.|.|+.|.|||+++-.++ .... .....|.+...++.......|.+....+
T Consensus 16 ~L~dvs~~i~~Ge~~~liG~nGsGKSTll~~i~-Gl~~--------------~~~G~i~~~G~~i~~~~~~~~~~r~~ig 80 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCIN-KLEE--------------ITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCC--------------CCCCEEEECCEECCCCCHHHHHHHHHCE
T ss_conf 881307898799899999999980999999996-3899--------------9997487899987887665899875242
Q ss_pred -----------------HCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCE--EEECCC-CCCHHHH--HHHHHHHCCCCCC
Q ss_conf -----------------1011000121376889-989999999862780--782589-9889999--9988640224447
Q gi|254780332|r 288 -----------------VPSSKIRRGELTRPDY-EKIVACSQVMQKLPL--YIDQTG-GISMSQL--ATRARRLKRQRGL 344 (504)
Q Consensus 288 -----------------I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l--~I~d~~-~~ti~~I--~~~~r~~~~~~gi 344 (504)
|-+...+...+...+. +++.++.+. ..| +.+..| .+|=.+- .+.+|.+. .++
T Consensus 81 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~~~~~~l~~---~gl~~~~~~~~~~LSGGq~QRvaiAraL~--~~P 155 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAK---VGLAERAHHYPSELSGGQQQRVAIARALA--VKP 155 (240)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHCCCCCCCCHHHHHHHHHHHHHH--CCC
T ss_conf 8801122478877999998789997599878999999999997---69924662987728999999999998773--599
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .+... -+. ....+|..-||.|+++ ++.||..++ || ..+.+-||-|+
T Consensus 156 ~lLllD-----EPt~~-LD~--~~~~~i~~ll~~l~~~-g~tvi~vtH----------------dl---~~~~~~adri~ 207 (240)
T PRK09493 156 KLMLFD-----EPTSA-LDP--ELRHEVLKVMQDLAEE-GMTMVIVTH----------------EI---GFAEKVASRLI 207 (240)
T ss_pred CEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEECC----------------CH---HHHHHHCCEEE
T ss_conf 999990-----88766-899--9999999999999976-998999947----------------99---99999699999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
+|+.
T Consensus 208 vl~~ 211 (240)
T PRK09493 208 FIDK 211 (240)
T ss_pred EEEC
T ss_conf 9989
No 181
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.83 E-value=0.01 Score=40.14 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=85.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
.|+++---+.+|+++.|-|+.|.|||+++--++ ..-... +| .+++..-.++...-..+++.....
T Consensus 27 ~L~dIs~~I~~GEiv~LiG~nGaGKSTLlr~i~-Gl~~p~-------------~G-~I~~~~~~i~~~~~~i~~vfQ~~~ 91 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA-GLETPT-------------AG-DLLAGTAPLAEAQEDTRLMFQDAR 91 (257)
T ss_pred EECCEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCC-------------CC-EEEECCEEHHHHHHCEEEEECCCC
T ss_conf 982407588799899999899888999999996-589888-------------87-089898755443110079932564
Q ss_pred -HCCCC----CCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf -10110----00121376889989999999862780782589-9889999--9988640224447467767135325664
Q gi|254780332|r 288 -VPSSK----IRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 288 -I~~~~----i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
+|... +.-| +.....+++.++.+.+. +.-+.+..| .+|-.+- .+.+|.+. +.+++++.| .+..
T Consensus 92 l~~~~tV~eni~~g-l~~~~~~~~~e~l~~vg-L~~~~~~~p~~LSGGqkQRvaiAraL~--~~P~lLlLD-----EPts 162 (257)
T PRK11247 92 LLPWKKVIDNVGLG-LKGQWRDAALQALAAVG-LADRANEWPAALSGGQKQRVALARALI--HRPRLLLLD-----EPLG 162 (257)
T ss_pred CCCCCCHHHHHHHH-CCCCHHHHHHHHHHHCC-CCHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC
T ss_conf 47677899998632-14106999999999859-913553694448999999999999984--599999980-----9876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
. -+. ..-.+|-.-|+.|+++.++.||..++ | -..++.-||-|+++..
T Consensus 163 g-LD~--~~~~~i~~ll~~L~~e~g~TIi~vTH----------------d---l~ea~~laDRI~vm~~ 209 (257)
T PRK11247 163 A-LDA--LTRIEMQDLIESLWQQHGFTVLLVTH----------------D---VSEAVAMADRVLLIEE 209 (257)
T ss_pred C-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf 5-799--99999999999999960989999887----------------9---9999996999999989
No 182
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.82 E-value=0.0096 Score=40.36 Aligned_cols=178 Identities=20% Similarity=0.313 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995---852179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~ 281 (504)
+-+.|+++---+.+|+.+.|.|++|+|||+|..-++ ..... .+| .|.+-. -+.+.+....|.
T Consensus 13 ~~~vL~~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~-g~~~~-------------~~G-~I~~~~~~~~~~~~~~~~~~~ 77 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAIL-GEMQT-------------LEG-KVHWSNKNESEPSFEATRSRN 77 (218)
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC-------------CCC-EEEECCEECCCCCHHHHHHHH
T ss_conf 990564769998699999999999980999999985-55656-------------776-499898666864677788875
Q ss_pred ---HHHHHHHC-------CCCCCCC-CCCHHHHHHHHHHHHH---HHHCC----EEEECCC-CCCHHHH--HHHHHHHCC
Q ss_conf ---99987410-------1100012-1376889989999999---86278----0782589-9889999--998864022
Q gi|254780332|r 282 ---ISEQTEVP-------SSKIRRG-ELTRPDYEKIVACSQV---MQKLP----LYIDQTG-GISMSQL--ATRARRLKR 340 (504)
Q Consensus 282 ---is~~s~I~-------~~~i~~g-~l~~~e~~~i~~a~~~---l~~~~----l~I~d~~-~~ti~~I--~~~~r~~~~ 340 (504)
++....-| ...|.-| .++...+..+.+++.. +..+| -.+.+.+ .+|-.|- .+.+|.+.+
T Consensus 78 r~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~i~~~g~~LSGGQ~QRi~iARal~~ 157 (218)
T cd03290 78 RYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65389981566567889999873379778899999999998777787510543054056788779899999999999844
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4447467767135325664432113-788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENR-VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r-~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
+.++++.| .+.+.- +.. ..++ +...+..+.++.+..||+.+. || ..+. .
T Consensus 158 --~~~illlD-----EptsaL-D~~~~~~i--~~~~i~~~~~~~~~TvI~itH----------------~l---~~l~-~ 207 (218)
T cd03290 158 --NTNIVFLD-----DPFSAL-DIHLSDHL--MQEGILKFLQDDKRTLVLVTH----------------KL---QYLP-H 207 (218)
T ss_pred --CCCEEEEE-----CCCCCC-CHHHHHHH--HHHHHHHHHCCCCCEEEEEEC----------------CH---HHHH-H
T ss_conf --89999998-----965578-86789999--999999997079939999906----------------98---8998-3
Q ss_pred CCEEEEEE
Q ss_conf 38788972
Q gi|254780332|r 420 ADVVLFVI 427 (504)
Q Consensus 420 AD~v~~l~ 427 (504)
||.|+.|.
T Consensus 208 aD~Iivm~ 215 (218)
T cd03290 208 ADWIIAMK 215 (218)
T ss_pred CCEEEEEC
T ss_conf 99999985
No 183
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.82 E-value=0.03 Score=36.60 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
++++---..+|++++|-|.+|+|||++.-.++
T Consensus 40 V~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~ 71 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVN 71 (382)
T ss_pred EECCEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 96517488799899999999734999999997
No 184
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.059 Score=34.32 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=38.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHHHHHHHHHCCCCC
Q ss_conf 267762131002769999999999851011123333321247975899958521---79998789999874101100
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS---SEQLATRIISEQTEVPSSKI 293 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs---~~el~~R~is~~s~I~~~~i 293 (504)
..+.+.|.+|+|||+.+--+|..... +|++|++++..-- +-+. .|..+...+||....
T Consensus 76 ~vI~lvG~~G~GKTTT~AKLA~~~~~---------------~~~kV~lia~DtyR~aA~eQ-Lk~~a~~l~v~~~~~ 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG---------------KKKTVGFITTDHSRIGTVQQ-LQDYVKTIGFEVIAV 136 (270)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCCCHHHHHH-HHHHHHHHCCCEECC
T ss_conf 18999888989889999999999986---------------79908999838888889999-999999819953545
No 185
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0074 Score=41.20 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
.|+.+---+.+|+.+.|.|+.|.|||+|+--++
T Consensus 17 iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~ 49 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49 (171)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 167718998599899999999983999999997
No 186
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0075 Score=41.18 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HHHHCCCCCCCC---CCCCCCCCCEEE--------------
Q ss_conf 10137765564167726776213100276999999999-985101112333---332124797589--------------
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYN-VADAYKAELQTD---GSYKTINGGIVG-------------- 266 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~-~A~~~~~~~~~~---~~~~~~~g~~Vl-------------- 266 (504)
++..+|++---+.+|+++.+-|++|+||||+..-||== -...+.....-. .....+-+...+
T Consensus 17 ~~~al~~isl~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~lpp~kR~ig~VFQ~YALFPHmtV~~ 96 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEE 96 (352)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCCCEEECCCCCCCCCCHHH
T ss_conf 72677321445448868999899888889999999677788886599999998889942265232606766688885899
Q ss_pred --EEECC----CCHHHHHHHHHHHHHHHCCCCCCC--C-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHH
Q ss_conf --99585----217999878999987410110001--2-137688998999999986278078258998899-----999
Q gi|254780332|r 267 --FYSLE----MSSEQLATRIISEQTEVPSSKIRR--G-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLA 332 (504)
Q Consensus 267 --~fSlE----Ms~~el~~R~is~~s~I~~~~i~~--g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~ 332 (504)
=|-|. ...+++..|...+..-|-+..+.. + +|+-.+..++.-|..-..+-++-.-|.|--.++ +++
T Consensus 97 NVafGLk~~~~~~~~ei~~rV~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr 176 (352)
T COG3842 97 NVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176 (352)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf 75533310577877899999999998748544444276664827899999999742183544342740023189999999
Q ss_pred HHHHHHCCCCCCCEEEECCHH
Q ss_conf 988640224447467767135
Q gi|254780332|r 333 TRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 333 ~~~r~~~~~~gi~~vvIDYLq 353 (504)
..++++.++-|+-+|+|=|=|
T Consensus 177 ~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 177 KELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHHHHHHHCCCEEEEEECCH
T ss_conf 999999985597299997898
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.022 Score=37.66 Aligned_cols=171 Identities=22% Similarity=0.305 Sum_probs=82.5
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHHHH
Q ss_conf 7765564167726776213100276999999999985101112333332124797589995852---1799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is~~ 285 (504)
|+++.--+.+|+.+.|.|++|.|||+|+--+. ..-.. +...|.+-..++ +..++. +.++..
T Consensus 18 L~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~i~g~~i~~~~~~~~r-~~i~~v 81 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDV--------------DSGRILIDGHDVRDYTLASLR-RQIGLV 81 (234)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCCHHHHH-HCEEEE
T ss_conf 53608998799999999899982999999996-67667--------------886899999996608999997-317999
Q ss_pred HHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHHH--HHHHHHHCCCCCCCE
Q ss_conf 7410-------1100012--13768899899999---99862780----78258-99889999--998864022444746
Q gi|254780332|r 286 TEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQL--ATRARRLKRQRGLDL 346 (504)
Q Consensus 286 s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~ 346 (504)
.+=| ...|.-| ..++++..+..+.. ..+..+|- .|.+. ..+|-.+- .+.+|.+. .+.++
T Consensus 82 ~Q~~~lf~~Ti~eNI~~g~~~~~~~~i~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGQ~QRi~lARal~--~~~~i 159 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL--KDPPI 159 (234)
T ss_pred CCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 3689471645999961479899999999999986345542027788755638878958999999999999996--49998
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+.+.- +... -..|...|+.+.+ +-.||..++ |+ + .+ ..||.|++|
T Consensus 160 liLD-----Epts~L-D~~~--e~~i~~~l~~~~~--~~TvI~itH-----------~l--~------~l-~~~D~Iivl 209 (234)
T cd03251 160 LILD-----EATSAL-DTES--ERLVQAALERLMK--NRTTFVIAH-----------RL--S------TI-ENADRIVVL 209 (234)
T ss_pred EEEE-----CCCCCC-CHHH--HHHHHHHHHHHHC--CCEEEEEEC-----------CH--H------HH-HHCCEEEEE
T ss_conf 9996-----876689-9899--9999999999819--998999927-----------88--8------99-859999999
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
.
T Consensus 210 ~ 210 (234)
T cd03251 210 E 210 (234)
T ss_pred E
T ss_conf 8
No 188
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.80 E-value=0.021 Score=37.84 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
|+.+.--+++|+.+.|.|.-|+|||+|+--++
T Consensus 340 l~~vs~~i~~Ge~iaivG~NGsGKSTLlk~l~ 371 (556)
T PRK11819 340 IDDLSFKLPPGGIVGIIGPNGAGKSTLFKMIT 371 (556)
T ss_pred EEEECCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 87640235788247898898775889999983
No 189
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.80 E-value=0.057 Score=34.45 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=70.8
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH--HHHH--CCCCCCCCCCC
Q ss_conf 6213100276999999999985101112333332124797589995852179998789999--8741--01100012137
Q gi|254780332|r 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE--QTEV--PSSKIRRGELT 299 (504)
Q Consensus 224 iaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~--~s~I--~~~~i~~g~l~ 299 (504)
....-|+|||++++++|...+. .|++|+++-..- .+-..+|... ..+. +...+. .
T Consensus 7 ~~~KGG~GKtT~a~~la~~~~~---------------~g~~V~liD~Dp--q~s~~~W~~~a~~~~~~~~~~~v~----~ 65 (231)
T pfam07015 7 CSFKGGAGKTTALMGLCSALAS---------------DGKRVALFEADE--NRPLTKWRENALRKGTWDPACEIF----N 65 (231)
T ss_pred EECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCC--CCCHHHHHHHHHHCCCCCCCCCEE----C
T ss_conf 6179986599999999999996---------------899599996899--868899999876468888765222----0
Q ss_pred HHHHHHHHHHHHHH--HHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 68899899999998--6278078258998899999988640224447467767135325664432113788999999999
Q gi|254780332|r 300 RPDYEKIVACSQVM--QKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK 377 (504)
Q Consensus 300 ~~e~~~i~~a~~~l--~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK 377 (504)
..+...+....+.. ..+.+.|.|+|+ +...+...+-.. -|+|+|= ++++.-. ..+..++-+.++
T Consensus 66 ~~~~~~l~~~~~~~~~~~yD~VIIDtpg-~~s~~~~~AI~~-----ADlVLIP----~qpSplD----~~~a~~t~~~i~ 131 (231)
T pfam07015 66 ADELPLLEQAYEHAEGSGFDYALADTHG-GSSELNNTIIAS-----SDLLLIP----TMLTPLD----IDEALATYRYVI 131 (231)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHH-----CCEEEEC----CCCCHHH----HHHHHHHHHHHH
T ss_conf 5660158999998865799989983998-575899999997-----8989977----8998233----999999999999
Q ss_pred HH--HHHHCCCE-EEEEECC
Q ss_conf 99--98827919-9977138
Q gi|254780332|r 378 AL--AKELNIPI-IALSQLS 394 (504)
Q Consensus 378 ~l--A~e~~ipv-i~lsQLn 394 (504)
.+ +...+||. |++++.+
T Consensus 132 ~~~~~~~~~ip~avl~tRv~ 151 (231)
T pfam07015 132 ELLLTENLAIPTAILRQRVP 151 (231)
T ss_pred HHHHHHCCCCCEEEEEEECC
T ss_conf 99997378998033455114
No 190
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.80 E-value=0.0046 Score=42.76 Aligned_cols=87 Identities=23% Similarity=0.338 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 301343367789999987411--2366443210137765564167--726776213100276999999999985101112
Q gi|254780332|r 176 HTFSDAMTVAIDMAGQAFNRD--GRLAGVSTGIQTLDKQMGGLQR--SDLIIIAGRPGMGKTSLATNIAYNVADAYKAEL 251 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--~~~~Gi~TG~~~LD~~~gGl~~--G~l~Viaarpg~GKTalalniA~~~A~~~~~~~ 251 (504)
.+-.+.+..+...+-.++.++ ..+.|-. ..|++.+-=|.+ .+==++-|-|||||||++=-+|..++...+.|-
T Consensus 185 ~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE---~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe 261 (774)
T TIGR02639 185 KKQQDALEKYTVDLTEKAKNGKIDPLIGRE---DELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAQRIAEGQKVPE 261 (774)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 046569988415489998608878734566---88742333203456788720448886448999999998641564670
Q ss_pred CCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 33333212479758999585217
Q gi|254780332|r 252 QTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 252 ~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
... +--+|||.|+.
T Consensus 262 ~Lk---------n~~IY~LDmG~ 275 (774)
T TIGR02639 262 VLK---------NAKIYSLDMGT 275 (774)
T ss_pred HHC---------CCCEEEECHHH
T ss_conf 024---------78345404345
No 191
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0089 Score=40.62 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521---79998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS---SEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs---~~el~~R~is~ 284 (504)
.|+..---+.+|+++.|.|+.|.|||++.--++--. ......|.|...+.+ ..++.. .++.
T Consensus 14 ~l~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~---------------~~~~G~i~~~g~~~~~~~~~~~~~-~i~~ 77 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL---------------KPTSGEILIDGKDIAKLPLEELRR-RIGY 77 (157)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC---------------CCCCCEEEECCEECCCCCHHHHHH-CCCC
T ss_conf 782117898799799998788999899999995884---------------799628999999999799999994-0608
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 87410110001213768899899999998627807825899
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~ 325 (504)
-++|+..|..++.-|..-+.+-++.|-|.|.
T Consensus 78 ----------v~QLSgGqkqrv~iA~al~~~p~ililDEPt 108 (157)
T cd00267 78 ----------VPQLSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf ----------7668869999999999997099999996987
No 192
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=96.79 E-value=0.045 Score=35.25 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=94.7
Q ss_pred HHHCCC-CEEEEECC-CHH-----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHH
Q ss_conf 641677-26776213-100-----27699999999998510111233333212479758999585-21799987899998
Q gi|254780332|r 214 GGLQRS-DLIIIAGR-PGM-----GKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE-MSSEQLATRIISEQ 285 (504)
Q Consensus 214 gGl~~G-~l~Viaar-pg~-----GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE-Ms~~el~~R~is~~ 285 (504)
.=|.|. ..+|++.| =|+ =||.-+++-|+++.+. ...+|+.|||.+.= =.+.++.. -.|..
T Consensus 19 RRWNPkMk~fIf~eRKngihIIDL~kT~~~~~~Ay~~v~~-----------~~~~gg~iLFVGTKNkQA~~~i~-~~A~r 86 (227)
T TIGR01011 19 RRWNPKMKPFIFGERKNGIHIIDLQKTLQLLEEAYNFVRE-----------VVANGGKILFVGTKNKQAKEIIK-EEAER 86 (227)
T ss_pred CCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH-----------HHHCCCEEEEEECHHHHHHHHHH-HHHHH
T ss_conf 2368889885532012785122578999999999999999-----------99819958885165889999999-99987
Q ss_pred HHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHCC-----EEEECCCCCCHHHHHHHHHHHCCCC-C-------CCEEEE-
Q ss_conf 74101100--012137688998999999986278-----0782589988999999886402244-4-------746776-
Q gi|254780332|r 286 TEVPSSKI--RRGELTRPDYEKIVACSQVMQKLP-----LYIDQTGGISMSQLATRARRLKRQR-G-------LDLLIV- 349 (504)
Q Consensus 286 s~I~~~~i--~~g~l~~~e~~~i~~a~~~l~~~~-----l~I~d~~~~ti~~I~~~~r~~~~~~-g-------i~~vvI- 349 (504)
+|.+|-.- .-|.||. |..|...+++|+++- =-++.-+-.=+..++.+..++.+-. | +|+|||
T Consensus 87 ~g~~YVn~RWLGGMLTN--f~TirkSi~kL~~lE~~~~~g~~~~LtKKE~~~L~Re~~KL~k~LgGIk~M~~lPd~l~vi 164 (227)
T TIGR01011 87 CGMFYVNQRWLGGMLTN--FKTIRKSIKKLKKLEKMEEDGTFDVLTKKEILMLSREKEKLEKNLGGIKDMKKLPDLLFVI 164 (227)
T ss_pred CCCCEECCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 48962113334640024--7999999999999998776133124770007767899999865530025453169708997
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 713532566443211378899999999999988279199977138220
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQV 397 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~ 397 (504)
| + .+. +-+|+| |+.|+||||++.-=|=+.
T Consensus 165 D------~-~~E----~IAv~E--------A~kLgIPvvA~vDTNCdP 193 (227)
T TIGR01011 165 D------P-RKE----KIAVAE--------ARKLGIPVVAIVDTNCDP 193 (227)
T ss_pred C------C-CCC----HHHHHH--------HHHCCCCEEEEECCCCCC
T ss_conf 4------8-210----689999--------733799789870478888
No 193
>PRK01172 ski2-like helicase; Provisional
Probab=96.79 E-value=0.032 Score=36.34 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=5.5
Q ss_pred CCCEEEEEECCC
Q ss_conf 797589995852
Q gi|254780332|r 261 NGGIVGFYSLEM 272 (504)
Q Consensus 261 ~g~~Vl~fSlEM 272 (504)
+|.+|++|..--
T Consensus 235 ~~~~~LVF~~sR 246 (674)
T PRK01172 235 DGGQVLVFVSSR 246 (674)
T ss_pred CCCCEEEEEECH
T ss_conf 699479995075
No 194
>PRK10908 cell division protein FtsE; Provisional
Probab=96.79 E-value=0.013 Score=39.24 Aligned_cols=175 Identities=15% Similarity=0.202 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHH--HH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---179998--78
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLA--TR 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~--~R 280 (504)
-+.|+++.--+.+|+++.|.|..|.|||++.--++- .-. .....|.|.--++ +..++. .|
T Consensus 15 ~~~L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G-l~~--------------p~~G~i~~~g~~i~~~~~~~~~~~r~ 79 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG-IER--------------PSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--------------CCCEEEEECCEECCCCCHHHHHHHHH
T ss_conf 879864387996998999999998079999999965-999--------------98629999999987566667799873
Q ss_pred HHHHHHHH----C----CCCCCCC----CCCHHH-HHHHHHHHHHHHHCCEE--EECCC-CCCHH--HHHHHHHHHCCCC
Q ss_conf 99998741----0----1100012----137688-99899999998627807--82589-98899--9999886402244
Q gi|254780332|r 281 IISEQTEV----P----SSKIRRG----ELTRPD-YEKIVACSQVMQKLPLY--IDQTG-GISMS--QLATRARRLKRQR 342 (504)
Q Consensus 281 ~is~~s~I----~----~~~i~~g----~l~~~e-~~~i~~a~~~l~~~~l~--I~d~~-~~ti~--~I~~~~r~~~~~~ 342 (504)
-++...+= + ...+.-+ ..+.++ .+++.++.+.+ .|. .+..| .+|-. +-.+.+|.+. +
T Consensus 80 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~p~~LSGGq~QRvaiAraL~--~ 154 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV---GLLDKAKNFPIQLSGGEQQRVGIARAVV--N 154 (222)
T ss_pred CCEEECCCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf 0247746830168977004565789884999899999999999874---8765764887668968999999999997--6
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++.| .|...- + ...-..|.+-|+.+++ .++.||..++ +-..+++-||-
T Consensus 155 ~P~iLllD-----EPt~~L-D--~~~~~~v~~~l~~l~~-~g~tvl~vtH-------------------d~~~~~~~~dr 206 (222)
T PRK10908 155 KPAVLLAD-----EPTGNL-D--DALSEGILRLFEEFNR-VGVTVLMATH-------------------DIGLISRRSYR 206 (222)
T ss_pred CCCEEEEE-----CCCCCC-C--HHHHHHHHHHHHHHHH-CCCEEEEECC-------------------CHHHHHHHCCE
T ss_conf 99999990-----987667-9--9999999999999986-1999999947-------------------99999986999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|+.|+.
T Consensus 207 i~vl~~ 212 (222)
T PRK10908 207 MLTLSD 212 (222)
T ss_pred EEEEEC
T ss_conf 999979
No 195
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.016 Score=38.71 Aligned_cols=256 Identities=13% Similarity=0.110 Sum_probs=115.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCC------CCCEEEEEECCCCHHHHHHH
Q ss_conf 3776556416772677621310027699999999998-5101112333332124------79758999585217999878
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA-DAYKAELQTDGSYKTI------NGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A-~~~~~~~~~~~~~~~~------~g~~Vl~fSlEMs~~el~~R 280 (504)
.+|.+---+++|+.+-|.|..|+|||+++-.++--.. ..+...+.-....... -.+.|.|+.-. +...+..|
T Consensus 339 av~~vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~~~~~G~I~~~G~~i~~~~~~~~~~~r~~i~~VfQd-p~~sl~p~ 417 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD-PYASLDPR 417 (623)
T ss_pred EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECC-CHHHCCCC
T ss_conf 65234003589958999767876689999998566466786799999997758867777654055689637-13424800
Q ss_pred HHHHHHHHCCCCCC-CCCCCHH-HHHHHHHHHHHHHHCCEEEECCC-CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 99998741011000-1213768-89989999999862780782589-9889999--998864022444746776713532
Q gi|254780332|r 281 IISEQTEVPSSKIR-RGELTRP-DYEKIVACSQVMQKLPLYIDQTG-GISMSQL--ATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 281 ~is~~s~I~~~~i~-~g~l~~~-e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
+--. ..| ...++ .|..... ..+++.+..+.+.=.+-+..-.| .+|=.+- .+.+|.+. .+++++|.|
T Consensus 418 ~~v~-~~i-~e~l~~~~~~~~~~~~~rv~~ll~~vgL~~~~~~r~P~eLSGGqrQRv~IAraL~--~~P~lLI~D----- 488 (623)
T PRK10261 418 QTVG-DSI-MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA--LNPKVIIAD----- 488 (623)
T ss_pred CCHH-HHH-HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCHHHHHHHHHHHHHH--HCCCEEEEE-----
T ss_conf 4599-999-9999973899889999999999987399867836882018999999999999999--699999996-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE--------
Q ss_conf 566443211378899999999999988279199977138220168999984010143242233138788972--------
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI-------- 427 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~-------- 427 (504)
.+.+. -+-. .-++|-.-|+.|.+|+++.++..|. || +.+.+-||-|+-+|
T Consensus 489 EPTs~-LDv~--~qa~il~Ll~~L~~~~g~til~IsH----------------Dl---~~v~~~adrv~Vm~~G~iVe~g 546 (623)
T PRK10261 489 EAVSA-LDVS--IRGQIINLLLDLQRDFGIAYLFISH----------------DM---AVVERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred CCCCC-CCHH--HHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEEEECCEEEEEC
T ss_conf 88666-7999--9999999999999972989999868----------------99---9999869999999898899988
Q ss_pred -CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CEEEEEEEECCCCCEEECCCCCCCCCCCCC
Q ss_conf -556616442333322211100000011233883899997408997--259999974685402007744667777644
Q gi|254780332|r 428 -RDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGP--TGTVTLAFQAEFTRFSALSDSSYQTGEHFD 502 (504)
Q Consensus 428 -R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~--~g~~~~~f~~~~~~f~~~~~~~~~~~~~~~ 502 (504)
+++.|....-|-++.=..+.....+ .+...+. +.. .|. .-.-+..|.+...++.++.+++|-..+..+
T Consensus 547 ~~~~v~~~P~hpyT~~Ll~a~p~~dp----~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~~~~~~ 617 (623)
T PRK10261 547 PRRAVFENPQHPYTRKLLAAVPVAEP----SRQRPQR-VLL--SDDLPSNIHLRGEEVAAVSLQCVGPGHYVARPQSE 617 (623)
T ss_pred CHHHHHHCCCCHHHHHHHHHCCCCCC----CCCCCCC-CCC--CCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCC
T ss_conf 88999707999899999972899996----3012442-467--99998898988788777430002799589646665
No 196
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.012 Score=39.71 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=83.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------CCCCCCEEEEEEC------CCCHHHHHHHHH
Q ss_conf 7726776213100276999999999985101112333332---------1247975899958------521799987899
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY---------KTINGGIVGFYSL------EMSSEQLATRII 282 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~---------~~~~g~~Vl~fSl------EMs~~el~~R~i 282 (504)
+|+++.|-|.+|+|||+|.--++ ................ ......+|.|.-- .|+..|-..
T Consensus 22 ~ge~~~iiGpSGsGKSTll~~i~-GL~~p~sG~I~~~G~~~~~~~~~~~~~~~~r~ig~VfQ~~~Lfp~ltV~eNi~--- 97 (214)
T cd03297 22 NEEVTGIFGASGAGKSTLLRCIA-GLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA--- 97 (214)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH---
T ss_conf 99799999999735999999998-49999964999999997665412467713487589767876578891999998---
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCH--HHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf 998741011000121376889989999999862780782589-9889--9999988640224447467767135325664
Q gi|254780332|r 283 SEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISM--SQLATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 283 s~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti--~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
.+++ .. -..+...++.+....+. ..=+.+-.| .+|= .+=.+.+|.+. ..+++++.| .|-+
T Consensus 98 -----~~l~-~~---~~~~~~~~v~e~l~~~g-l~~~~~~~P~~LSGGq~QRVaiARAL~--~~P~llLlD-----EP~s 160 (214)
T cd03297 98 -----FGLK-RK---RNREDRISVDELLDLLG-LDHLLNRYPAQLSGGEKQRVALARALA--AQPELLLLD-----EPFS 160 (214)
T ss_pred -----HHHC-CC---CHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC
T ss_conf -----8876-79---86899999999998779-977860897779929999999999987--199999980-----8876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 43211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
. -+... -.+|-..||.+.+++++++|..+. | -..+.+-||-|++++
T Consensus 161 a-LD~~~--~~~i~~~l~~l~~~~~~t~i~VTH----------------d---~~e~~~ladrv~vm~ 206 (214)
T cd03297 161 A-LDRAL--RLQLLPELKQIKKNLNIPVIFVTH----------------D---LSEAEYLADRIVVME 206 (214)
T ss_pred C-CCHHH--HHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEE
T ss_conf 6-69999--999999999999985998999989----------------9---999999699999998
No 197
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.78 E-value=0.022 Score=37.66 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
|+.+.--+.+|+.+.+-|+.|.|||+|.--++- .-... .....+.....+.|+
T Consensus 16 l~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G-~~~~~------~G~i~~~~~~~i~y~-------------------- 68 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPD------EGIVTWGSTVKIGYF-------------------- 68 (144)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC------CEEEEECCCCEEEEE--------------------
T ss_conf 963489987999999998999849999999848-98898------509999996089987--------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 0110001213768899899999998627807825899
Q gi|254780332|r 289 PSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 289 ~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~ 325 (504)
++|+-.+..++.-|..-+.+-++.|-|.|.
T Consensus 69 -------~QLSgGqkqr~~la~al~~~p~iliLDEPt 98 (144)
T cd03221 69 -------EQLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred -------HHCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf -------007999999999999972599899995775
No 198
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.76 E-value=0.038 Score=35.80 Aligned_cols=175 Identities=13% Similarity=0.186 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
.+.|+.+.--+.+|+++.+.|+-|.|||++.-.++ ..... +...|.|-.-+.+..-...|.--.+
T Consensus 13 ~~~l~~vs~~v~~Gei~~llGpNGAGKSTll~~i~-Gl~~p--------------~~G~I~~~g~di~~~~~~~r~r~gi 77 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV-GLVKP--------------DSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCE
T ss_conf 99882606798999599999999961999999997-79999--------------8629999999999999999997197
Q ss_pred HHHCCCCCCCC---------------CCCHHH-HHHHHHHHHHHHHCCEEE-ECC--CCCCHH--HHHHHHHHHCCCCCC
Q ss_conf 74101100012---------------137688-998999999986278078-258--998899--999988640224447
Q gi|254780332|r 286 TEVPSSKIRRG---------------ELTRPD-YEKIVACSQVMQKLPLYI-DQT--GGISMS--QLATRARRLKRQRGL 344 (504)
Q Consensus 286 s~I~~~~i~~g---------------~l~~~e-~~~i~~a~~~l~~~~l~I-~d~--~~~ti~--~I~~~~r~~~~~~gi 344 (504)
+-+|-..-.-. .+...+ .+++.... ....|.- -+. ..+|-. +-.+.+|.+. +++
T Consensus 78 g~~pQ~~~l~~~ltV~enl~~~~~~~~~~~~~~~~~~~~~l---~~~~L~~~~~~~~~~LSgG~~qrv~iAraL~--~~P 152 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL---EEFHITHLRKSKASSLSGGERRRVEIARALA--TNP 152 (232)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHCCCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCC
T ss_conf 98777776788888999999999972999999999999999---8769824653942559999999999999996--699
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .|... -+ .....++..-+|.|+ +-++.|+..++ |+ ..+++-||-|+
T Consensus 153 ~illlD-----EPt~G-LD--p~~~~~i~~~i~~l~-~~g~tili~tH----------------~l---~~~~~~~drv~ 204 (232)
T cd03218 153 KFLLLD-----EPFAG-VD--PIAVQDIQKIIKILK-DRGIGVLITDH----------------NV---RETLSITDRAY 204 (232)
T ss_pred CEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHH-HCCCEEEEEEC----------------CH---HHHHHHCCEEE
T ss_conf 999988-----98568-89--999999999999999-58999999928----------------39---99998699999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
+|+.
T Consensus 205 vl~~ 208 (232)
T cd03218 205 IIYE 208 (232)
T ss_pred EEEC
T ss_conf 9979
No 199
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.76 E-value=0.0094 Score=40.42 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=77.7
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE------CCCCHHHHHHHHHHHHHH
Q ss_conf 64167726776213100276999999999985101112333332124797589995------852179998789999874
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS------LEMSSEQLATRIISEQTE 287 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS------lEMs~~el~~R~is~~s~ 287 (504)
|-+.+|+++.|-|..|+|||||.--++ .......... ...|..+.|.. ..++..++....
T Consensus 20 Gti~~GEiv~liGpNGaGKSTLlk~l~-Gll~p~~G~I-------~~~g~~i~~~pq~~~~~~~~tv~~~l~~~------ 85 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLA-GVLKPDEGDI-------EIELDTVSYKPQYIKADYEGTVRDLLSSI------ 85 (246)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEE-------EECCCCCCCCCHHHCCCCCCCHHHHHHHH------
T ss_conf 846579899999799976999999997-7878886079-------98982057687433257772799999988------
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf 1011000121376889989999999862780782589988999--99988640224447467767135325664432113
Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504)
Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504)
..+......|. .+..+.+.=..+.=.....+|=.+ -.+.+|.+. .++++++.| .+... -+-.
T Consensus 86 ------~~~~~~~~~~~--~e~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~--~~p~ilLLD-----EPts~-LD~~ 149 (246)
T cd03237 86 ------TKDFYTHPYFK--TEIAKPLQIEQILDREVPELSGGELQRVAIAACLS--KDADIYLLD-----EPSAY-LDVE 149 (246)
T ss_pred ------HHHCCCCHHHH--HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCC-CCHH
T ss_conf ------64312127999--99998849956764870028985999999999984--199999984-----89876-8999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 78899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
. -.++.+-||.|+++.++.||..+. || ..+.+-||-|+.|.
T Consensus 150 ~--~~~i~~~i~~l~~~~~~Tvi~VtH----------------Dl---~~a~~~aDrIivl~ 190 (246)
T cd03237 150 Q--RLMASKVIRRFAENNEKTAFVVEH----------------DI---IMIDYLADRLIVFE 190 (246)
T ss_pred H--HHHHHHHHHHHHHHCCCEEEEECC----------------CH---HHHHHHCCEEEEEC
T ss_conf 9--999999999999867989999837----------------89---99998699999981
No 200
>PRK09694 hypothetical protein; Provisional
Probab=96.76 E-value=0.062 Score=34.18 Aligned_cols=151 Identities=22% Similarity=0.307 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--CHHHHHHHHHHHHHHHCC---C
Q ss_conf 67726776213100276999999999985101112333332124797589995852--179998789999874101---1
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM--SSEQLATRIISEQTEVPS---S 291 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM--s~~el~~R~is~~s~I~~---~ 291 (504)
.|| |+||-|.+|.|||-.||-.|...+.. .|..-+||-|== +.+.+..|+.....++.. -
T Consensus 302 ~Pg-L~IiEAptG~GKTEAAL~~A~~L~~~--------------~~~~Gl~faLPT~ATaNaMf~Rv~~~~~~~~~~~~v 366 (878)
T PRK09694 302 APG-LTVIEAPTGSGKTETALAYAWKLIDQ--------------QLADSVIFALPTQATANAMLSRMEAAASKLFPSPNL 366 (878)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 998-79997589997589999999999973--------------489836997747988999999999999973689976
Q ss_pred CCCCCC--CCHH-------------HHHHHHHHHHHHHH--CCEEEECCCCCCHHHHHHHHHHHC----CCCCC--CEEE
Q ss_conf 000121--3768-------------89989999999862--780782589988999999886402----24447--4677
Q gi|254780332|r 292 KIRRGE--LTRP-------------DYEKIVACSQVMQK--LPLYIDQTGGISMSQLATRARRLK----RQRGL--DLLI 348 (504)
Q Consensus 292 ~i~~g~--l~~~-------------e~~~i~~a~~~l~~--~~l~I~d~~~~ti~~I~~~~r~~~----~~~gi--~~vv 348 (504)
.+..|. ++.. +...-..+..++.. .+....+..--||+|+--.+-+.+ |-.|+ ++||
T Consensus 367 ~LaHg~a~l~~~~~~l~~~~~~~~~~~~~~~~~~~W~~~~~Kr~LLap~~VGTiDQaLla~L~~kH~~LR~~gLa~kvvI 446 (878)
T PRK09694 367 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLI 446 (878)
T ss_pred EEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHHCCCEEE
T ss_conf 97447365505666510136765445430157776641110223137715467999999874614899999986287489
Q ss_pred ECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 67135325664432113788999999999999882791999771
Q gi|254780332|r 349 VDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 349 IDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
||=++=.. .| -.+.+.+-|+.++ .+++|||+||=
T Consensus 447 iDEVHAYD--------~Y-m~~lL~~lL~wl~-~~g~~viLLSA 480 (878)
T PRK09694 447 VDEVHAYD--------AY-MNGLLEAVLKAQA-QVGGSVILLSA 480 (878)
T ss_pred EECCCCCC--------HH-HHHHHHHHHHHHH-HCCCCEEEEEC
T ss_conf 72533345--------88-9999999999999-83998899927
No 201
>PRK11519 tyrosine kinase; Provisional
Probab=96.76 E-value=0.012 Score=39.67 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=38.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 6776213100276999999999985101112333332124797589995852179998789
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRI 281 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~ 281 (504)
+.|-.+.||-|||+++.|+|...|. .|++|+++-..|-+-.+...+
T Consensus 529 i~vTS~~pgEGKSt~a~nLA~~~A~---------------~G~rvLLID~DlRrp~l~~~~ 574 (720)
T PRK11519 529 LMMTGVSPSIGKTFVCANLAAVISQ---------------TNKRVLLIDCDMRKGYTHELL 574 (720)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCHHHHHC
T ss_conf 9997089999789999999999983---------------799199993877770167753
No 202
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.76 E-value=0.012 Score=39.52 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=48.9
Q ss_pred CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9889999--99886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
.+|=.+- .+.+|.+. .++++++.| .|.. .-+ .....+|...|..+.++.+..||..|+
T Consensus 427 ~LSGGq~QRvaiAraL~--~~P~vlilD-----EPT~-glD--~~~~~~i~~~l~~~~~~~g~tvi~iSh---------- 486 (520)
T TIGR03269 427 ELSEGERHRVALAQVLI--KEPRIVILD-----EPTG-TMD--PITKVDVTHSILKAREEMEQTFIIVSH---------- 486 (520)
T ss_pred HCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCHH-HHH--HHHHHHHHHHHHHHHHHCCCEEEEECC----------
T ss_conf 18999999999999999--798989993-----8601-133--899999999999999832989999778----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
| -..+.+-||-|+.++.
T Consensus 487 ------D---l~~~~~~~dRv~vm~~ 503 (520)
T TIGR03269 487 ------D---MDFVLDVCDRAALMRD 503 (520)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------8---8999986999999979
No 203
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.04 Score=35.63 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=92.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHH
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958---5217999878999
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIIS 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is 283 (504)
.-||.+.--+.+|+++.|-|+-|.|||+|.-.++--. .. ....|.+.-- .++..++..+ ++
T Consensus 16 ~~L~~isl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~-~p--------------~sG~I~i~g~~i~~~~~~~~~~~-i~ 79 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TP--------------QSGTVFLGDKPISMLSARQLARR-LS 79 (255)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CC--------------CCCEEEECCEECCCCCHHHHHHH-EE
T ss_conf 9982308899899799999999981999999997598-88--------------86489999998362998998511-89
Q ss_pred HHHH-------------H-----CCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCC
Q ss_conf 9874-------------1-----0110001213768899899999998627807825899889999--998864022444
Q gi|254780332|r 284 EQTE-------------V-----PSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRG 343 (504)
Q Consensus 284 ~~s~-------------I-----~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~g 343 (504)
...+ | +... ..+....++.+++.++.+.+.=..+-=.....+|=.+- .+.+|.+. .+
T Consensus 80 ~vpQ~~~~~~~~tv~e~v~~g~~~~~~-~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRv~iAraL~--~~ 156 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVSYGRSPWLS-LWGRLSAEDNARVNQAMNQTRINHLADRRLTELSGGQRQRAFLAMVLA--QD 156 (255)
T ss_pred EECCCCCCCCCCCHHHHHHCCCCHHHH-HCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHH--CC
T ss_conf 976767578998899999705501234-415686889999999998829825647974529999999999999995--39
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
+++++.| .|... -+- ....++..-++.++++ +..|+..+. || ..+.+-||-|
T Consensus 157 p~lllLD-----EPtsg-LD~--~~~~~i~~li~~l~~~-g~tvi~vtH----------------dl---~~~~~~aDri 208 (255)
T PRK11231 157 TPVVLLD-----EPTTY-LDI--NHQVELMRLMRELNTQ-GKTVVTVLH----------------DL---NQASRYCDHL 208 (255)
T ss_pred CCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------------CH---HHHHHHCCEE
T ss_conf 9979983-----88644-899--9999999999999868-999999937----------------88---9999969999
Q ss_pred EEEEC
Q ss_conf 89725
Q gi|254780332|r 424 LFVIR 428 (504)
Q Consensus 424 ~~l~R 428 (504)
++|++
T Consensus 209 ivl~~ 213 (255)
T PRK11231 209 VVMAN 213 (255)
T ss_pred EEEEC
T ss_conf 99989
No 204
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.02 Score=38.01 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CC-----CCEEEEEECCCCHH----
Q ss_conf 013776556416772677621310027699999999998510111233333212-47-----97589995852179----
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT-IN-----GGIVGFYSLEMSSE---- 275 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~-~~-----g~~Vl~fSlEMs~~---- 275 (504)
+..++++---+++|+.+.|.|..|.|||+|+--++- ................. .. .+.+.|.+-+....
T Consensus 276 ~~~l~~vsf~v~~GEi~gl~G~nGsGKsTL~~~l~G-l~~~~~G~I~~~G~~i~~~~~~~~~~~gi~~v~~~r~~~~l~~ 354 (510)
T PRK09700 276 RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG-VDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHCCCEEEEEEHHHCCCCC
T ss_conf 886543357874881899976888628899999819-8888861899999999989989999708677531033247488
Q ss_pred --HHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCE-EEECCC-CCCHHHHH--HHHHHHCCCCCCCEE
Q ss_conf --998789999874101100--0121376889989999999862780-782589-98899999--988640224447467
Q gi|254780332|r 276 --QLATRIISEQTEVPSSKI--RRGELTRPDYEKIVACSQVMQKLPL-YIDQTG-GISMSQLA--TRARRLKRQRGLDLL 347 (504)
Q Consensus 276 --el~~R~is~~s~I~~~~i--~~g~l~~~e~~~i~~a~~~l~~~~l-~I~d~~-~~ti~~I~--~~~r~~~~~~gi~~v 347 (504)
.+..-+ +....+..... ..|.++..+..+..+....+-.... .++..+ .+|-.+-+ +.+|.+. .+++++
T Consensus 355 ~~sv~en~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~LSGGq~Qrv~iAraL~--~~p~lL 431 (510)
T PRK09700 355 NFSIAQNM-AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC--CCPEVI 431 (510)
T ss_pred CCCHHHHH-HHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH--HCCCEE
T ss_conf 99689999-899876421000010136778999999999987188655422881459999999999999998--599889
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.| .|... -+ .....+|.+-|+.++.+ ++.||..|. | -..+.+-||-|+.++
T Consensus 432 ilD-----EPT~G-lD--~~~~~~i~~li~~l~~~-G~tvl~ish----------------d---l~ev~~~~DRi~Vm~ 483 (510)
T PRK09700 432 IFD-----EPTRG-ID--VGAKAEIYKVMRQLADD-GKVILMVSS----------------E---LPEIITVCDRIAVFC 483 (510)
T ss_pred EEE-----CCCCC-CC--HHHHHHHHHHHHHHHHC-CCEEEEEEC----------------C---HHHHHHHCCEEEEEE
T ss_conf 997-----97558-99--99999999999999968-999999907----------------5---899998699999998
Q ss_pred C
Q ss_conf 5
Q gi|254780332|r 428 R 428 (504)
Q Consensus 428 R 428 (504)
.
T Consensus 484 ~ 484 (510)
T PRK09700 484 E 484 (510)
T ss_pred C
T ss_conf 9
No 205
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.017 Score=38.48 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=86.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCEEEEEEC------CCCHHHHHHHHHHHHH
Q ss_conf 167726776213100276999999999985101112333332---1247975899958------5217999878999987
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY---KTINGGIVGFYSL------EMSSEQLATRIISEQT 286 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~---~~~~g~~Vl~fSl------EMs~~el~~R~is~~s 286 (504)
+++|+.+.|.|+.|.|||++.--++ ..-............. .......+.+... .|+..+...
T Consensus 22 i~~GE~v~iiG~nGaGKSTLl~~i~-Gll~p~sG~I~i~G~~~~~~~~~~r~i~~v~Q~~~l~~~ltv~eni~------- 93 (233)
T PRK10771 22 VERGEQVAILGPSGAGKSTLLNLIA-GFLTPASGSLLINGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG------- 93 (233)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHH-------
T ss_conf 8899899999999981999999996-59999855999999998879988888799905776688990999998-------
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCC
Q ss_conf 41011000121376889989999999862780782589-988999--999886402244474677671353256644321
Q gi|254780332|r 287 EVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEE 363 (504)
Q Consensus 287 ~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~ 363 (504)
+..-....+.....+++.+..+.+. +.=+.+..| .+|=.+ -.+.+|.+. .++++++.| .|... -+
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSGGq~QRv~iAraL~--~~P~vLllD-----EPts~-LD 161 (233)
T PRK10771 94 ---LGLNPGLKLNAAQREKLHAIARQMG-IENLLARLPGELSGGQRQRVALARCLV--REQPILLLD-----EPFSA-LD 161 (233)
T ss_pred ---HHHHCCCCCCHHHHHHHHHHHHHCC-CHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCCC-CC
T ss_conf ---7862267876889999999998779-966860894559999999999999985--599999992-----87755-79
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 13788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 364 NRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 364 ~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
. ....+|-.-|+.++++.++.||..+. || ..+.+-||-|++|+.
T Consensus 162 ~--~~~~~i~~ll~~l~~~~~~til~vtH----------------dl---~~~~~~adri~vl~~ 205 (233)
T PRK10771 162 P--ALRQEMLTLVSQVCQQRQLTLLMVSH----------------SV---EDAARIAPRSLVVAD 205 (233)
T ss_pred H--HHHHHHHHHHHHHHHHCCCEEEEEEC----------------CH---HHHHHHCCEEEEEEC
T ss_conf 9--99999999999999836989999924----------------89---999996999999989
No 206
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.021 Score=37.83 Aligned_cols=162 Identities=23% Similarity=0.243 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
-+-|+++..-++||+++.|-|+.|.|||+|.--++- .. .. .... ..+.+-..+.+. -..|.++
T Consensus 20 ~~vL~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g---~~--~~-------~~~~-G~i~~~g~~~~~--~~~~~ig-- 82 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG---RK--TA-------GVIT-GEILINGRPLDK--NFQRSTG-- 82 (192)
T ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHC---CC--CC-------CCEE-EEEEECCEECCH--HHHHHEE--
T ss_conf 799988388992883999999999988999999837---98--78-------8317-899987827667--7562279--
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCC
Q ss_conf 7410110001213768899899999998627807825899889999--99886402244474677671353256644321
Q gi|254780332|r 286 TEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEE 363 (504)
Q Consensus 286 s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~ 363 (504)
=++-.....+.++-.|.-.+. ..+ .++|..+= .+.++.+. .++++++.| .|... -+
T Consensus 83 -yv~q~~~~~~~~tv~e~l~~~---~~l----------~~LS~gqrqrv~iA~aL~--~~P~lllLD-----EPt~g-LD 140 (192)
T cd03232 83 -YVEQQDVHSPNLTVREALRFS---ALL----------RGLSVEQRKRLTIGVELA--AKPSILFLD-----EPTSG-LD 140 (192)
T ss_pred -EEECCHHCCCCCHHHHHHHHH---HHH----------HCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCCC-CC
T ss_conf -994113307345499999866---777----------337976765899999984--499889984-----88768-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEE-EECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 137889999999999998827919997-71382201689999840101432422331387889725
Q gi|254780332|r 364 NRVLEITGITMALKALAKELNIPIIAL-SQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 364 ~r~~~i~~is~~lK~lA~e~~ipvi~l-sQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
......|.+-|+.++++ +..|++. +|. +..|.+-||-|++|++
T Consensus 141 --~~~~~~i~~~l~~l~~~-g~tiii~th~~-------------------~~~i~~~~Driivl~~ 184 (192)
T cd03232 141 --SQAAYNIVRFLKKLADS-GQAILCTIHQP-------------------SASIFEKFDRLLLLKR 184 (192)
T ss_pred --HHHHHHHHHHHHHHHHC-CCEEEEEECCC-------------------HHHHHHHCCEEEEECC
T ss_conf --89999999999999969-99999998363-------------------7999987999999979
No 207
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.74 E-value=0.016 Score=38.61 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9889999--99886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
.+|-.+- .+.+|.+. .++++++.| .+... -+- ..-..+.+-+|.|+++ +..||..+.
T Consensus 139 ~LSGGq~QRvaIAraL~--~~P~iLlLD-----EPTs~-LD~--~~~~~v~~li~~L~~~-G~Tvi~vtH---------- 197 (255)
T cd03236 139 QLSGGELQRVAIAAALA--RDADFYFFD-----EPSSY-LDI--KQRLNAARLIRELAED-DNYVLVVEH---------- 197 (255)
T ss_pred HCCHHHHHHHHHHHHHC--CCCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEECC----------
T ss_conf 58999999999999736--899999997-----98765-899--9999999999999978-999999907----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
| -..+++-||-|+.||-
T Consensus 198 ------D---l~~~~~laDrI~Vm~G 214 (255)
T cd03236 198 ------D---LAVLDYLSDYIHCLYG 214 (255)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------8---9999986998999818
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.73 E-value=0.039 Score=35.75 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=32.9
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 77621310027699999999998510111233333212479758999585217999878999
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is 283 (504)
.++.|.||.|||-||..||..+.. +|++|+|++. .++..|+-+
T Consensus 99 LlF~G~~GTGKThLA~aIan~Li~---------------~G~sVlf~t~----~dLl~~lr~ 141 (242)
T PRK07952 99 FIFSGKPGTGKNHLAAAICNELLL---------------RGKSVLIITV----ADIMSAMKD 141 (242)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH----HHHHHHHHH
T ss_conf 799789999789999999999998---------------7994999779----999999999
No 209
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.73 E-value=0.028 Score=36.81 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=76.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCEEEEEE------CCCCHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247----97589995------85217999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTIN----GGIVGFYS------LEMSSEQL 277 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~----g~~Vl~fS------lEMs~~el 277 (504)
-|+.+---+.+|+.+.|.|+-|.|||+|.--++ .................... ...+.|+. .+|+..|.
T Consensus 16 vl~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~ltv~en 94 (204)
T PRK13538 16 LFEGLSFTLNAGELVQIEGPNGAGKTSLLRILA-GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf 980517798799899999999985999999997-6888887379999999764888888447874542445655829999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE-EECC--CCCCHHHHH--HHHHHHCCCCCCCEEEECCH
Q ss_conf 878999987410110001213768899899999998627807-8258--998899999--98864022444746776713
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY-IDQT--GGISMSQLA--TRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~-I~d~--~~~ti~~I~--~~~r~~~~~~gi~~vvIDYL 352 (504)
.. +.+.. .+...+ +++.++...+ .|. ..+. ..+|-.+-+ +.+|.+. .++++++.|
T Consensus 95 l~-~~~~~---------~~~~~~---~~~~~~L~~~---gL~~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLD-- 154 (204)
T PRK13538 95 LR-FYQRL---------HGPADD---DAIWEALAQV---GLAGFEDVPARQLSAGQQRRVALARLWL--TRAPLWILD-- 154 (204)
T ss_pred HH-HHHHH---------CCCCCH---HHHHHHHHHC---CCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE--
T ss_conf 99-99985---------599638---9999999986---9911332882248999999999999996--099989997--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.|... -+ ......+..-|+.++++-. .||..+. -.+|.-||-|+-|.
T Consensus 155 ---EPt~~-LD--~~~~~~l~~~l~~~~~~g~-~vi~~tH---------------------~dl~~~ad~v~vl~ 201 (204)
T PRK13538 155 ---EPFTA-ID--KQGVARLEQLLAQHAEQGG-MVILTTH---------------------QDLPGASDKVRKLR 201 (204)
T ss_pred ---CCCCC-CC--HHHHHHHHHHHHHHHHCCC-EEEEEEC---------------------HHHHHHCCEEEEEC
T ss_conf ---88657-89--9999999999999985899-8999986---------------------69898769999973
No 210
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.033 Score=36.24 Aligned_cols=174 Identities=17% Similarity=0.255 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE----EECCCCHHHH----
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899----9585217999----
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGF----YSLEMSSEQL---- 277 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~----fSlEMs~~el---- 277 (504)
+..||.+--=+++|+.+.|.|..|+|||+++..++--. .. ..| .|.+ +.-.....++
T Consensus 39 ~~AL~~Is~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll-~p-------------~~G-~I~i~~~~~~~~~~~~~~~~~~ 103 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KS-------------KYG-TIQVGDIYIGDKKNNHELITNP 103 (320)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC-------------CCC-EEEECCEECCCCCCCCCCCCCC
T ss_conf 79861645588599899999499984999999997588-89-------------983-5998658714544563100250
Q ss_pred ----------HHHHHHHHHHHC--------------CCCCCCCCCCHHHH-HHHHHHHHHHHHCCE---EEECCC-CCCH
Q ss_conf ----------878999987410--------------11000121376889-989999999862780---782589-9889
Q gi|254780332|r 278 ----------ATRIISEQTEVP--------------SSKIRRGELTRPDY-EKIVACSQVMQKLPL---YIDQTG-GISM 328 (504)
Q Consensus 278 ----------~~R~is~~s~I~--------------~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l---~I~d~~-~~ti 328 (504)
..|.++..-+.| +.-...| .+.++. +++..+ +....+ +.+..| .+|=
T Consensus 104 ~~~~~~~~~~lr~~vg~VfQ~P~~~lf~~tV~~di~fg~~~~g-~~~~e~~~r~~~~---L~~vgl~~~~~~r~p~~LSG 179 (320)
T PRK13631 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALG-VKKSEAKKLAKFY---LNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH---HHHCCCCHHHHHCCCCCCCH
T ss_conf 2667778999753489996074303165289999998899859-9999999999999---98879974674378220999
Q ss_pred HHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 9999--98864022444746776713532566443211378899999999999988279199977138220168999984
Q gi|254780332|r 329 SQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQ 406 (504)
Q Consensus 329 ~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~ 406 (504)
.+-+ +.+|.+. ..+++++.| .+... -+-. .-.+|.+-++.+.++ +..||..++
T Consensus 180 GqkQRVaIA~aLa--~~P~iLilD-----EPTag-LDp~--~~~~i~~li~~l~~~-g~TiilvTH-------------- 234 (320)
T PRK13631 180 GQKRRVAIAGILA--IQPEILIFD-----EPTAG-LDPK--GEHEMMQLILDAKAN-NKTVFVITH-------------- 234 (320)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEC-----CCCCC-CCHH--HHHHHHHHHHHHHHC-CCEEEEECC--------------
T ss_conf 9999999999972--399999975-----87555-9989--999999999999962-999999947--------------
Q ss_pred CCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 0101432422331387889725
Q gi|254780332|r 407 LSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 407 lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
+-+.+.+-||-|+.|+.
T Consensus 235 -----dm~~v~~~aDrviVm~~ 251 (320)
T PRK13631 235 -----TMEHVLEVADEVIVMDK 251 (320)
T ss_pred -----CHHHHHHHCCEEEEEEC
T ss_conf -----89999997999999989
No 211
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.73 E-value=0.069 Score=33.84 Aligned_cols=175 Identities=19% Similarity=0.255 Sum_probs=88.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585---217999878999
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRIIS 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~is 283 (504)
.-|+.+---+++|+++.|-|..|.|||+|.--++--. . .....|.+.--+ ++..+++.+ ++
T Consensus 16 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~-~--------------p~~G~I~~~g~~i~~~~~~~~~~~-~g 79 (257)
T PRK13548 16 TVLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-P--------------PSSGEVRLFGRPLADWSPAELARR-RA 79 (257)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-C--------------CCCCEEEEECEECCCCCHHHHHHH-EE
T ss_conf 9880337898699899999999987999999985675-7--------------787569993657675899999754-65
Q ss_pred HH---HHHC--C---CCCCCC----CCC-HHHHHHHHHHHHHHHHCCEE-EEC--CCCCCHHHH--HHHHHHHCC----C
Q ss_conf 98---7410--1---100012----137-68899899999998627807-825--899889999--998864022----4
Q gi|254780332|r 284 EQ---TEVP--S---SKIRRG----ELT-RPDYEKIVACSQVMQKLPLY-IDQ--TGGISMSQL--ATRARRLKR----Q 341 (504)
Q Consensus 284 ~~---s~I~--~---~~i~~g----~l~-~~e~~~i~~a~~~l~~~~l~-I~d--~~~~ti~~I--~~~~r~~~~----~ 341 (504)
.. ..+. + ..+.-| ... .+..+++.++.+. ..+. +.+ ...+|=.+- .+.+|.+.+ .
T Consensus 80 ~v~Q~~~l~~~~tv~e~v~~g~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSGGq~QRv~iAraL~q~~~~~ 156 (257)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRYPHTLSQKEDDQLVAAALAQ---VDLAHLAGRSYPTLSGGEQQRVQLARVLAQLWEPG 156 (257)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 861236678998399999977876589989999999999987---69902416981669999999999999996200104
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
.++++++.| .+... -+- ....++.+-||.++++ +..|+..++ || ..+.+-||
T Consensus 157 ~~P~lLlLD-----EPtsg-LD~--~~~~~i~~ll~~l~~~-g~tvl~vtH----------------dl---~~~~~~aD 208 (257)
T PRK13548 157 GGPRWLLLD-----EPTSA-LDL--AHQHHVLRLARQLAER-GAAVIVVLH----------------DL---NLAARYAD 208 (257)
T ss_pred CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------------CH---HHHHHHCC
T ss_conf 799889988-----98766-899--9999999999999855-999999927----------------88---99999799
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
-|++|++
T Consensus 209 rv~vl~~ 215 (257)
T PRK13548 209 RIVLLHQ 215 (257)
T ss_pred EEEEEEC
T ss_conf 9999989
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.72 E-value=0.023 Score=37.51 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=28.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 772677621310027699999999998510111233333212479758999585
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
++.-+++-|.||+|||++|..+|..... .+.++++++..
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~---------------~~~~~~~~~~~ 56 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR---------------PGAPFLYLNAS 56 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC---------------CCCCEEEEEHH
T ss_conf 9980899899998865999999997121---------------37982785477
No 213
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.036 Score=36.02 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~i 282 (504)
...+|.+---+.+|+..-+.|-+|+|||+++--++.=. ...+..|.|=- ..|+.++...|+.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~---------------~pt~G~i~f~g~~i~~~~~~~~~~~v~ 90 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE---------------EPTSGEILFEGKDITKLSKEERRERVL 90 (268)
T ss_pred EEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCC---------------CCCCCEEEECCCCHHHCCHHHHHHHHH
T ss_conf 48751156897589878999368887787999997283---------------888726998685311136667999999
Q ss_pred HHHHHHCCCC--C-CCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCH---HHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 9987410110--0-012-13768899899999998627807825899--889---9999988640224447467767
Q gi|254780332|r 283 SEQTEVPSSK--I-RRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISM---SQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 283 s~~s~I~~~~--i-~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti---~~I~~~~r~~~~~~gi~~vvID 350 (504)
-....|.... + +.+ .++..+.+++.-|..-.-+-.+.|.|.|. +.+ .+|....+.++.+.|+..+||=
T Consensus 91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~~lq~~~~lt~lFIs 167 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred HHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99998098877863388303731335699999985098679743721101246799999999999998597589998
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.71 E-value=0.05 Score=34.92 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=58.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7726776213100276999999999985101112333332124797589995852---1799987899998741011000
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIISEQTEVPSSKIR 294 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is~~s~I~~~~i~ 294 (504)
++..+++-|.+|+|||+-.--+|...+. ....++|.++|+.= .+.|. .+..+-+-++|.....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-------------~~~~~kVaiITtDtYRIGA~EQ-Lk~Ya~im~vp~~vv~ 267 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-------------LKKKKKVAIITTDTYRIGAVEQ-LKTYADIMGVPLEVVY 267 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-------------HCCCCCEEEEEECCCHHHHHHH-HHHHHHHHCCCEEEEC
T ss_conf 6857999899887588799999999975-------------3257606899714411528999-9999998699559963
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 121376889989999999862780782589988
Q gi|254780332|r 295 RGELTRPDYEKIVACSQVMQKLPLYIDQTGGIS 327 (504)
Q Consensus 295 ~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~t 327 (504)
++ .-+..++..+.++.+...|+.+.+
T Consensus 268 ~~-------~el~~ai~~l~~~d~ILVDTaGrs 293 (407)
T COG1419 268 SP-------KELAEAIEALRDCDVILVDTAGRS 293 (407)
T ss_pred CH-------HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99-------999999998531888999689988
No 215
>PRK03839 putative kinase; Provisional
Probab=96.70 E-value=0.037 Score=35.85 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=15.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHH
Q ss_conf 6776213100276999999999
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYN 242 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~ 242 (504)
+++|.|-||+|||+++-.+|..
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999789999989999999997
No 216
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.70 E-value=0.038 Score=35.81 Aligned_cols=184 Identities=18% Similarity=0.208 Sum_probs=80.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC-----------CCCCCCCCCCCCC-EEEEEECCCCHH
Q ss_conf 3776556416772677621310027699999999998510111-----------2333332124797-589995852179
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAE-----------LQTDGSYKTINGG-IVGFYSLEMSSE 275 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~-----------~~~~~~~~~~~g~-~Vl~fSlEMs~~ 275 (504)
.|+++.--+.+|+++.|.|..|.|||+|++............. ...........|. +.+.+.- ....
T Consensus 10 ~L~~Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 88 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQ-KTTS 88 (226)
T ss_pred CCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCEEEEEC-CCCC
T ss_conf 656748998599899998789960989836166332331011553066541224457641121316673499951-2000
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCE---EEECCC-CCCHHHH--HHHHHHHCCCCCCCEEEE
Q ss_conf 9987899998741011000121376889989999999862780---782589-9889999--998864022444746776
Q gi|254780332|r 276 QLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPL---YIDQTG-GISMSQL--ATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 276 el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l---~I~d~~-~~ti~~I--~~~~r~~~~~~gi~~vvI 349 (504)
+.....+...+.+. ..++. .+. ...+.+....+.+..+ .++..+ .+|=.+- .+.+|.+...-...+++.
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSGGq~QRv~iAraL~~~~~~~lliL 163 (226)
T cd03270 89 RNPRSTVGTVTEIY-DYLRL-LFA---RVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCHHHHHHHHHHHH-HHHHH-HHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 48445478899999-99988-764---43399999999975996454678378689999999999999973898716883
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 71353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
| .|...- +. .....|.+.|+.| ++.+..||+.++ |+ ..+ +.||-|+.|
T Consensus 164 D-----EPTsgL-D~--~~~~~i~~~i~~l-~~~G~Tvi~VsH----------------d~---~~~-~~aDriivm 211 (226)
T cd03270 164 D-----EPSIGL-HP--RDNDRLIETLKRL-RDLGNTVLVVEH----------------DE---DTI-RAADHVIDI 211 (226)
T ss_pred C-----CCCCCC-CH--HHHHHHHHHHHHH-HHCCCEEEEEEE----------------CH---HHH-HHCCEEEEE
T ss_conf 2-----873337-98--9999999999999-976998999972----------------57---899-848999994
No 217
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.025 Score=37.18 Aligned_cols=167 Identities=18% Similarity=0.248 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
..-|+++---..+|+++.|-|++|+||||| +++....-.................|..+.|.=- +.-..=|.+..
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTL-LriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ----~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTL-LRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ----EDALLPWLTVL 90 (248)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEC----CCCCCCHHHHH
T ss_conf 687605035877997999989997889999-9999687877775599888215789987799926----67645146688
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCE--EEECCCC-C--CHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC
Q ss_conf 741011000121376889989999999862780--7825899-8--8999999886402244474677671353256644
Q gi|254780332|r 286 TEVPSSKIRRGELTRPDYEKIVACSQVMQKLPL--YIDQTGG-I--SMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK 360 (504)
Q Consensus 286 s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l--~I~d~~~-~--ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~ 360 (504)
-+|.+.--..| .+..|... .+...+....| |=+-.|. + -.-|=.+.+|.+. ..++++..| .+=+
T Consensus 91 ~NV~l~l~~~~-~~~~e~~~--~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~--~~P~lLLlD-----EPFg- 159 (248)
T COG1116 91 DNVALGLELRG-KSKAEARE--RAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA--TRPKLLLLD-----EPFG- 159 (248)
T ss_pred HHHEEHHHCCC-CCHHHHHH--HHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCC-
T ss_conf 44350441256-56176899--9999999759742101696001847999999999971--499979876-----9741-
Q ss_pred CCCHHHHHH--HHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 321137889--99999999999882791999771
Q gi|254780332|r 361 IEENRVLEI--TGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 361 ~~~~r~~~i--~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
.- .++ ...-..|-.|.++.+..|+..+.
T Consensus 160 AL----DalTR~~lq~~l~~lw~~~~~TvllVTH 189 (248)
T COG1116 160 AL----DALTREELQDELLRLWEETRKTVLLVTH 189 (248)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 20----1999999999999999964988999908
No 218
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.69 E-value=0.0019 Score=45.68 Aligned_cols=177 Identities=16% Similarity=0.279 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-----------
Q ss_conf 321013776556416772677621310027699999999998510111233333212479758999585-----------
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE----------- 271 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE----------- 271 (504)
|..++.||++--=+.+|+++.|-|..|.|||||+..+.--. ..+...|.+.-+.
T Consensus 17 ~~~~~AL~dvsl~I~~GE~v~IiG~nGsGKSTL~k~l~Gll---------------~P~~G~V~~~g~d~~~~~~~~~~~ 81 (304)
T PRK13651 17 PSELKALDGVSTEINQGEFIAIIGQTGSGKTTFIEHLNALL---------------LPDTGTIEWIYFDEKNKEKKKVVE 81 (304)
T ss_pred CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC---------------CCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 87446863405798599899998799985999999996699---------------988716999424543455431134
Q ss_pred ---------------------------CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCE-EEEC
Q ss_conf ---------------------------21799987899998741011000121376889-989999999862780-7825
Q gi|254780332|r 272 ---------------------------MSSEQLATRIISEQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPL-YIDQ 322 (504)
Q Consensus 272 ---------------------------Ms~~el~~R~is~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l-~I~d 322 (504)
-+..|+....+ .-.|.+.-... .++.++. +++.++.+.+ +++- |.+-
T Consensus 82 ~~~~~~~~~~~~~~~~~lr~~vG~vfQ~p~~ql~~~tV--~e~i~fg~~~~-g~~~~e~~~rv~~~l~~v-gL~~~~~~~ 157 (304)
T PRK13651 82 DPVIKLKFRKKLKKIKEIRRRVGVVFQFAEYQLFEQTI--EKDIIFGPVSM-GVSKEEAKKRAAKYIELV-GLPEEFLQK 157 (304)
T ss_pred CHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHH--HHHHHHHHHHC-CCCHHHHHHHHHHHHHHC-CCCHHHHHC
T ss_conf 30221345666666898773379995178545565059--99999999984-999999999999999986-998567518
Q ss_pred CC-CCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 89-98899999--9886402244474677671353256644321137889999999999998827919997713822016
Q gi|254780332|r 323 TG-GISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 323 ~~-~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
.| .+|-.+-+ +.++.+. .++++++.| .+... -+. ....+|..-++.|.++ +..||..+.
T Consensus 158 ~p~~LSGGqkqRVaIA~~La--~~P~iLlLD-----EPTag-LDp--~~~~~i~~~l~~L~~~-G~TVI~vTH------- 219 (304)
T PRK13651 158 SPFELSGGQKRRVALAGILA--MEPDFLVFD-----EPTAG-LDP--QGVKEILEIFDTLNKK-GKTIILVTH------- 219 (304)
T ss_pred CCCCCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEECC-------
T ss_conf 95428999999999999884--599999972-----98665-898--9999999999999977-999999867-------
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 89999840101432422331387889725
Q gi|254780332|r 400 RDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 400 r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
+-..+.+-||-|+.|++
T Consensus 220 ------------dm~~v~~~adRvivl~~ 236 (304)
T PRK13651 220 ------------DLDNVLEWTKRTIFFKD 236 (304)
T ss_pred ------------CHHHHHHHCCEEEEEEC
T ss_conf ------------89999997999999989
No 219
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.68 E-value=0.025 Score=37.17 Aligned_cols=178 Identities=20% Similarity=0.231 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---1799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~i 282 (504)
.+.|+++---+++|+++.|.|..|.|||+|.--++ ..-. .+...|.+.--++ +..+...+-+
T Consensus 13 ~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~-Gl~~--------------p~~G~I~~~G~~i~~~~~~~~~~~gi 77 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM-GLLP--------------PRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCC--------------CCCEEEEECCEECCCCCHHHHHHCCE
T ss_conf 99981408998899899999999985999999997-7988--------------99609999999999999999997593
Q ss_pred HHHHH---H-CC----CCCCCC---CCCHHHHHHHHHHHHHHHHCCEEEEC-CCCCCHHHH--HHHHHHHCCCCCCCEEE
Q ss_conf 99874---1-01----100012---13768899899999998627807825-899889999--99886402244474677
Q gi|254780332|r 283 SEQTE---V-PS----SKIRRG---ELTRPDYEKIVACSQVMQKLPLYIDQ-TGGISMSQL--ATRARRLKRQRGLDLLI 348 (504)
Q Consensus 283 s~~s~---I-~~----~~i~~g---~l~~~e~~~i~~a~~~l~~~~l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~~vv 348 (504)
+...+ + +. ..+.-+ ........++.++...+..+.-+.+. ...+|-.+- .+.+|.+. .++++++
T Consensus 78 ~~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~--~~P~lll 155 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM--SRPKLLL 155 (222)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEE
T ss_conf 89635665688990999999987635813599999999988663799874845448999999999999996--4999999
Q ss_pred ECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 67135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 349 VDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 349 IDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.| .|... -+ .....+|.+-++.+++ .++.||..++ | -..++.-||-|+++++
T Consensus 156 LD-----EPt~g-LD--~~~~~~i~~~l~~l~~-~g~tii~vtH----------------d---l~~~~~~~Drv~vl~~ 207 (222)
T cd03224 156 LD-----EPSEG-LA--PKIVEEIFEAIRELRD-EGVTILLVEQ----------------N---ARFALEIADRAYVLER 207 (222)
T ss_pred EE-----CCCCC-CC--HHHHHHHHHHHHHHHH-CCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf 93-----86547-99--9999999999999995-6999999908----------------5---8999996999999979
No 220
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.68 E-value=0.04 Score=35.63 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=46.9
Q ss_pred CCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 988999--999886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
.+|=.+ -.+.+|.+. ..+++++.| .+.+. -+. ....+|..-|+.|+++ +..||..++
T Consensus 152 ~LSGGq~QRv~IAraL~--~~P~lLllD-----EPts~-LD~--~~~~~i~~ll~~l~~~-g~tii~vtH---------- 210 (257)
T PRK10619 152 HLSGGQQQRVSIARALA--MEPEVLLFD-----EPTSA-LDP--ELVGEVLRIMQQLAEE-GKTMVVVTH---------- 210 (257)
T ss_pred CCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCEEEEECC----------
T ss_conf 58999999999999986--399899976-----88665-898--9999999999999975-999999948----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
| =..+.+-||-|++|+.
T Consensus 211 ------d---l~~~~~~adri~vl~~ 227 (257)
T PRK10619 211 ------E---MGFARHVSSHVIFLHQ 227 (257)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------9---9999986999999989
No 221
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.02 Score=37.88 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 98899999--9886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
.+|-.+-+ +.+|.+. .++++++.| .|.. .-+ ...-.+|..-|+.|+++ +..||..|.
T Consensus 391 ~LSGGq~QRv~iAraL~--~~p~iLilD-----EPTs-GLD--~~~~~~i~~ll~~l~~~-G~~il~iSH---------- 449 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLL--TQPEILMLD-----EPTR-GID--VGAKFEIYQLIAELAKK-DKGIIIISS---------- 449 (491)
T ss_pred CCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCCC-CCC--HHHHHHHHHHHHHHHHC-CCEEEEEEC----------
T ss_conf 49999999999999998--499889997-----8755-799--99999999999999968-999999958----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
| -..+.+-||-|+.++.
T Consensus 450 ------D---l~~~~~~~DRv~vm~~ 466 (491)
T PRK10982 450 ------E---MPELLGITDRILVMSN 466 (491)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------5---8999986999999979
No 222
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.67 E-value=0.045 Score=35.21 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=9.7
Q ss_pred HCCCCEEEEECCCHHHHHHH
Q ss_conf 16772677621310027699
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSL 235 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTal 235 (504)
+++|+++.|-|+.|.|||+|
T Consensus 31 i~~Ge~v~i~G~nGsGKSTl 50 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTL 50 (648)
T ss_pred ECCCCEEEEECCCCCHHHHH
T ss_conf 98998999999999629999
No 223
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.049 Score=34.93 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=88.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH--HHHHHHHHCCCC-
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878--999987410110-
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR--IISEQTEVPSSK- 292 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R--~is~~s~I~~~~- 292 (504)
+++|+++++.|++|.|||++.. +....+....... ..+|.+. -+++.+.+... +++..+-+....
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~-lL~G~~~~~~G~I-------~vng~~l----~~l~~~~~~k~i~~v~Q~p~lf~gTi 411 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLN-LLLGFLAPTQGEI-------RVNGIDL----RDLSPEAWRKQISWVSQNPYLFAGTI 411 (559)
T ss_pred ECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEE-------EECCCCC----CCCCHHHHHHHEEEECCCCCCCCCCH
T ss_conf 5489679998899997899999-9847577778448-------8899310----00687788867246279984056418
Q ss_pred ---CC--CCCCCHHHHHHHHHHHH---HHHH---CCEEEECC-CCCCHHHHHH--HHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf ---00--12137688998999999---9862---78078258-9988999999--8864022444746776713532566
Q gi|254780332|r 293 ---IR--RGELTRPDYEKIVACSQ---VMQK---LPLYIDQT-GGISMSQLAT--RARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 293 ---i~--~g~l~~~e~~~i~~a~~---~l~~---~~l~I~d~-~~~ti~~I~~--~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
|. +++.++++...+.+-.. .+.+ +.--|.+. .++|..|.+. .+|.+-+ +.++++.| .+.
T Consensus 412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llD-----EpT 484 (559)
T COG4988 412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLD-----EPT 484 (559)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEC-----CCC
T ss_conf 87773168767899999999982578761677764330215888778999999999998558--88889854-----875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.. -+-..+ ..|...|-.+|++ ...+++..++..- .+||.|+.+-
T Consensus 485 A~-LD~etE--~~i~~~l~~l~~~-ktvl~itHrl~~~---------------------~~~D~I~vld 528 (559)
T COG4988 485 AH-LDAETE--QIILQALQELAKQ-KTVLVITHRLEDA---------------------ADADRIVVLD 528 (559)
T ss_pred CC-CCHHHH--HHHHHHHHHHHHC-CEEEEEECCHHHH---------------------HCCCEEEEEC
T ss_conf 67-987679--9999999999727-8699997673778---------------------5499899964
No 224
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0091 Score=40.53 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
.|+.+.--+.+|+.+.|-|++|.|||+|+--++- .-.. .+| .+.+--. +++..++..+ ++.
T Consensus 18 vL~~inl~i~~Ge~vaivG~sGsGKSTLl~ll~g-l~~p-------------~~G-~I~idg~~i~~~~~~~~r~~-i~~ 81 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMR-FYDP-------------QKG-QILIDGIDIRDISRKSLRSM-IGV 81 (229)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC-------------CCC-EEEECCEECCCCCHHHHHHC-EEE
T ss_conf 8746299987999999999999809999999966-8667-------------873-89999999541899999632-899
Q ss_pred HHHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCC----EEEEC-CCCCCHHHH--HHHHHHHCCCCCCC
Q ss_conf 87410-------1100012--13768899899999---9986278----07825-899889999--99886402244474
Q gi|254780332|r 285 QTEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLP----LYIDQ-TGGISMSQL--ATRARRLKRQRGLD 345 (504)
Q Consensus 285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~----l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~ 345 (504)
..+-| ...|.-+ ..+++++..+.+.. ..+..+| -.|.+ ...+|-.+- .+.+|.+. .+.+
T Consensus 82 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qri~lARal~--~~~~ 159 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML--RDPK 159 (229)
T ss_pred ECCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCC
T ss_conf 90389875745999840589999999999999984004588758464578615786449999999999999995--1899
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .+...- +... -..|...|+.+.+ +..+|+.++ | + ..+ +.||-|++
T Consensus 160 illlD-----Epts~L-D~~t--~~~i~~~l~~~~~--~~TvI~itH-------~---------~---~~~-~~~D~iiv 209 (229)
T cd03254 160 ILILD-----EATSNI-DTET--EKLIQEALEKLMK--GRTSIIIAH-------R---------L---STI-KNADKILV 209 (229)
T ss_pred EEEEE-----CCCCCC-CHHH--HHHHHHHHHHHCC--CCEEEEEEC-------C---------H---HHH-HHCCEEEE
T ss_conf 89998-----977789-9899--9999999999809--988999926-------9---------8---899-85999999
Q ss_pred EE
Q ss_conf 72
Q gi|254780332|r 426 VI 427 (504)
Q Consensus 426 l~ 427 (504)
|.
T Consensus 210 l~ 211 (229)
T cd03254 210 LD 211 (229)
T ss_pred EE
T ss_conf 98
No 225
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.66 E-value=0.035 Score=36.09 Aligned_cols=29 Identities=34% Similarity=0.335 Sum_probs=23.3
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 55641677267762131002769999999
Q gi|254780332|r 212 QMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 212 ~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
+.-.+.+|+++.|-|+-|.|||+|.--++
T Consensus 19 isl~i~~G~i~~i~G~NGsGKSTLlk~i~ 47 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIA 47 (195)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 77787799799999999981999999996
No 226
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.011 Score=40.01 Aligned_cols=176 Identities=19% Similarity=0.186 Sum_probs=83.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC----HHHHHHHHH
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958521----799987899
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS----SEQLATRII 282 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs----~~el~~R~i 282 (504)
..|+...-.+.+|+.+.|.|.+|+|||++...++-= .. .....|.+.-..-+ ..++..+ +
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-l~--------------p~~G~v~~~g~~~~~~~~~~~~~~~-v 81 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-LK--------------PTSGEVLVDGLDTSSEKSLLELRQK-V 81 (235)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCCC-CC--------------CCCCEEEECCCCCCCHHHHHHHHCC-E
T ss_conf 476253389878989999889998899999995376-76--------------8898488778133100218876312-1
Q ss_pred HHHHHHCC---------CCCCCC----CCCHHH-HHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCE
Q ss_conf 99874101---------100012----137688-9989999999862780782589988999--9998864022444746
Q gi|254780332|r 283 SEQTEVPS---------SKIRRG----ELTRPD-YEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDL 346 (504)
Q Consensus 283 s~~s~I~~---------~~i~~g----~l~~~e-~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~ 346 (504)
...-+-|- ..+..| .+..++ ..++.++.....-..+.-.....+|=.| ..+.+--+. -++++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa--~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA--MGPEI 159 (235)
T ss_pred EEEEECHHHCEECCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEHHHHHHHH--CCCCE
T ss_conf 6999971126104758888753574449998999999999999818611123881106973166588668887--18989
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+.. .-+ .....++.+-++.|.++.+..||..+. + -.-+..-||-|+.+
T Consensus 160 liLD-----EPta-~LD--~~~~~~l~~~l~~L~~~~~~tiii~tH-------d------------~~~~~~~ad~v~vl 212 (235)
T COG1122 160 LLLD-----EPTA-GLD--PKGRRELLELLKKLKEEGGKTIIIVTH-------D------------LELVLEYADRVVVL 212 (235)
T ss_pred EEEC-----CCCC-CCC--HHHHHHHHHHHHHHHHCCCCEEEEEEC-------C------------HHHHHHHCCEEEEE
T ss_conf 9974-----9988-989--789999999999988607976999947-------4------------78988548899998
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
.
T Consensus 213 ~ 213 (235)
T COG1122 213 D 213 (235)
T ss_pred E
T ss_conf 8
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.66 E-value=0.038 Score=35.80 Aligned_cols=131 Identities=19% Similarity=0.313 Sum_probs=70.7
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64167726776213100276999999999985101112333332124797589995852179998789999874101100
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKI 293 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i 293 (504)
+++.+| |+ +-|.+|+|||-|+--+|...|. +|.+|+|.+. -++..++-++.+
T Consensus 154 ~~~~kG-ly-l~G~~G~GKTyL~~aian~La~---------------~g~~v~~v~~----p~~~~~lK~s~~------- 205 (306)
T PRK08939 154 GEKVKG-LY-LYGDFGVGKTYLLAAIANELAK---------------KGVSSTLVHF----PEFIRELKNAIS------- 205 (306)
T ss_pred CCCCCE-EE-EECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH----HHHHHHHHHHHC-------
T ss_conf 988877-88-9899999899999999999998---------------6992999875----999999999864-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCE-EEECCC-----CCCHHHHHHHHHHHCCCCCCCEEE---ECCHHH---CCCCCCC
Q ss_conf 0121376889989999999862780-782589-----988999999886402244474677---671353---2566443
Q gi|254780332|r 294 RRGELTRPDYEKIVACSQVMQKLPL-YIDQTG-----GISMSQLATRARRLKRQRGLDLLI---VDYIQL---MTTSKKI 361 (504)
Q Consensus 294 ~~g~l~~~e~~~i~~a~~~l~~~~l-~I~d~~-----~~ti~~I~~~~r~~~~~~gi~~vv---IDYLql---i~~~~~~ 361 (504)
++ .+...+..+++.|+ .+||-. .++-++|-..+-.....+++..+| .+.=.| +....+.
T Consensus 206 -d~--------s~~~~i~~~k~~~vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~~~~~~ 276 (306)
T PRK08939 206 -DG--------SVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRG 276 (306)
T ss_pred -CC--------CHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCC
T ss_conf -89--------889999998449989984446542677789989999999999749997997799999999998632699
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2113788999999999999882
Q gi|254780332|r 362 EENRVLEITGITMALKALAKEL 383 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~lA~e~ 383 (504)
. .......|..++|.||++.
T Consensus 277 -~-e~~ka~RimeRI~~l~~~v 296 (306)
T PRK08939 277 -D-ETVKAARIMERIRYLAKEV 296 (306)
T ss_pred -C-CHHHHHHHHHHHHHHCEEE
T ss_conf -5-3799999999999857358
No 228
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=96.62 E-value=0.019 Score=38.03 Aligned_cols=37 Identities=35% Similarity=0.437 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 7762131002769999999999851011123333321247975899958521
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS 273 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs 273 (504)
.|.++.-|+|||+++.|+|...|+. |++|+.+-+...
T Consensus 2 av~s~KGGVGKTT~a~nLA~~la~~---------------G~rVlliD~D~q 38 (212)
T pfam01656 2 AIAGTKGGVGKTTLAANLARALAKR---------------GYRVLLIDLDPQ 38 (212)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHC---------------CCCEEEEECCCC
T ss_conf 8976899806999999999999978---------------997899838999
No 229
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.61 E-value=0.022 Score=37.67 Aligned_cols=181 Identities=16% Similarity=0.187 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCEEEEE-------ECCCCH
Q ss_conf 01377655641677267762131002769999999999851011123333321247----9758999-------585217
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTIN----GGIVGFY-------SLEMSS 274 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~----g~~Vl~f-------SlEMs~ 274 (504)
...||.+.--..+|+.+.+-|.-|.||||+.--+ ..................... -..+.++ -.+|+.
T Consensus 34 ~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l-~Gl~~p~~G~I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL-SGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCEEEEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCH
T ss_conf 8986680578848959999999983099999999-649488715999999985104098884379995775424679939
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEEC-CCCCCHHHHH--HHHHHHCCCCCCCEEEEC
Q ss_conf 9998789999874101100012137688-99899999998627807825-8998899999--988640224447467767
Q gi|254780332|r 275 EQLATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQ-TGGISMSQLA--TRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 275 ~el~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d-~~~~ti~~I~--~~~r~~~~~~gi~~vvID 350 (504)
.|.. ++.+...+++ ..+ .+++.+..+.+.=.+ +.+. ...+|-.+-+ +.++.+. +++++++.|
T Consensus 113 ~e~l-~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~rqrv~ia~aL~--~~P~lllLD 178 (236)
T cd03267 113 IDSF-YLLAAIYDLP----------PARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALL--HEPEILFLD 178 (236)
T ss_pred HHHH-HHHHHHHCCC----------HHHHHHHHHHHHHHCCCHH-HHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 9999-9999985738----------9999999999999748687-754934569999999999999996--799999997
Q ss_pred CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 351 YIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 351 YLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|.. .-+ .....+|.+-|+.++++.++.|+..++ | -..+++-||-|++|+.
T Consensus 179 -----EPt~-gLD--~~~~~~i~~~l~~l~~~~g~till~tH----------------~---l~ev~~~~Drv~vl~~ 229 (236)
T cd03267 179 -----EPTI-GLD--VVAQENIRNFLKEYNRERGTTVLLTSH----------------Y---MKDIEALARRVLVIDK 229 (236)
T ss_pred -----CCCC-CCC--HHHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf -----9876-889--999999999999999738989999888----------------7---8999997999999989
No 230
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.61 E-value=0.014 Score=39.20 Aligned_cols=171 Identities=19% Similarity=0.246 Sum_probs=89.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH----HHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179----99878999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE----QLATRIIS 283 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~----el~~R~is 283 (504)
-|+++.--+.+|+.+.|.|+.|.|||+|.--++- ....... .........+.|..-++... ....+++
T Consensus 19 vL~~vs~~i~~Gei~~LiGpNGaGKSTLlk~I~G-l~~p~~G------~I~~~~~~~igyvpq~~~~~~~~~~~~~~~~- 90 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-LVAPDEG------VIKRNGKLRIGYVPQKLYLDTTLPLTVNRFL- 90 (251)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCC------EEEECCCCEEECCCHHHHCCCCCHHHHHHHH-
T ss_conf 9963078987997999998999889999999966-8889860------8999994026204377621876218999986-
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCC
Q ss_conf 9874101100012137688998999999986278078258-998899999--9886402244474677671353256644
Q gi|254780332|r 284 EQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKK 360 (504)
Q Consensus 284 ~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~ 360 (504)
.+.. .... ..+..+.+.+.-..+ .+.. ..+|-.+-+ +.+|.+. ..+++++.| .+...
T Consensus 91 --------~~~~-~~~~---~~i~~~l~~~~~~~~-~~~~~~~LSGGq~QRv~iAraL~--~~P~lLiLD-----EPTsg 150 (251)
T PRK09544 91 --------RLRP-GTKK---EDILPALKRVQAGHL-IDAPMQKLSGGETQRVLLARALL--NRPQLLVLD-----EPTQG 150 (251)
T ss_pred --------HCCC-CCCH---HHHHHHHHHHCCCHH-HHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCCC
T ss_conf --------3276-6538---999999987385224-32654458999999999999997--499989980-----98646
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 32113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 361 IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 361 ~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
-+- .....+..-|+.|+++.++.||..++ | =..+++-||-|++|..
T Consensus 151 -LD~--~~~~~i~~li~~L~~e~g~til~vtH----------------D---l~~~~~~aDrIivLng 196 (251)
T PRK09544 151 -VDV--NGQVALYDLIDQLRRELDCAVLMVSH----------------D---LHLVMAKTDEVLCLNH 196 (251)
T ss_pred -CCH--HHHHHHHHHHHHHHHHCCCEEEEEEC----------------C---HHHHHHHCCEEEEECC
T ss_conf -899--99999999999999832989999906----------------8---9999986999999999
No 231
>PRK04195 replication factor C large subunit; Provisional
Probab=96.60 E-value=0.031 Score=36.43 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=12.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHH
Q ss_conf 6776213100276999999999
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYN 242 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~ 242 (504)
..++.|.||+|||+.|.-+|..
T Consensus 42 ~lLL~GPpGvGKTT~a~~lAk~ 63 (403)
T PRK04195 42 ALLLYGPPGVGKTSLAHALAND 63 (403)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6998893998799999999998
No 232
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.60 E-value=0.023 Score=37.51 Aligned_cols=179 Identities=15% Similarity=0.213 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~i 282 (504)
++.+|++---+.+|+.+-|.|..|+|||+++..++--.-... ...+..+.|-. ..|+..+.. ++.
T Consensus 20 v~Av~~Vsf~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~-----------~~~~g~i~~~g~dl~~~~~~~~~-~~~ 87 (327)
T PRK11022 20 FKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG-----------RVMAEKLEFNGQDLQRISEKERR-NLV 87 (327)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-----------CEEEEEEEECCEECCCCCHHHHH-HHH
T ss_conf 999844187988999999999998789999999974889899-----------76542799999997749999999-863
Q ss_pred ----HHHHHHCCC----------------CCCCCCCCHHHHHHHHHHHHHHHHCCE-----EEECCC-CCCHHHH--HHH
Q ss_conf ----998741011----------------000121376889989999999862780-----782589-9889999--998
Q gi|254780332|r 283 ----SEQTEVPSS----------------KIRRGELTRPDYEKIVACSQVMQKLPL-----YIDQTG-GISMSQL--ATR 334 (504)
Q Consensus 283 ----s~~s~I~~~----------------~i~~g~l~~~e~~~i~~a~~~l~~~~l-----~I~d~~-~~ti~~I--~~~ 334 (504)
++.-+=|+. ++..+ .+.. +...++.+.+....| .++..| .+|=.+- .+.
T Consensus 88 g~~i~~vfQdp~~sLnP~~tv~~~i~e~l~~~~~-~~~~--~~~~r~~elL~~vgl~~~~~~l~~yP~eLSGGq~QRV~I 164 (327)
T PRK11022 88 GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG-GNKK--TRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMI 164 (327)
T ss_pred CCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHCC-CCHH--HHHHHHHHHHHHHCCCCHHHHHHCCHHHCCHHHHHHHHH
T ss_conf 7766999608513207455555767778887527-8889--999999999987158568889742855469999999999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86402244474677671353256644321137889999999999998827919997713822016899998401014324
Q gi|254780332|r 335 ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG 414 (504)
Q Consensus 335 ~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg 414 (504)
+|.+. .+++++|.| .+... -+-. .-.+|-.-|+.|.++.++.++..+. || +
T Consensus 165 ArAL~--~~P~lLIaD-----EPTsa-LD~~--~q~~Il~ll~~l~~~~g~til~ITH----------------Dl---~ 215 (327)
T PRK11022 165 AMAIA--CRPKLLIAD-----EPTTA-LDVT--IQAQIIELLLELQQKENMALVLITH----------------DL---A 215 (327)
T ss_pred HHHHH--HCCCEEEEC-----CCCCC-CCHH--HHHHHHHHHHHHHHHHCCCEEEEEC----------------CH---H
T ss_conf 99997--099999983-----88765-7999--9999999999999971994899928----------------89---9
Q ss_pred HHHHHCCEEEEEEC
Q ss_conf 22331387889725
Q gi|254780332|r 415 SIEQDADVVLFVIR 428 (504)
Q Consensus 415 ~IEqdAD~v~~l~R 428 (504)
.+.+-||-|+-+|.
T Consensus 216 ~v~~~aDri~VMy~ 229 (327)
T PRK11022 216 LVAEAAHKIIVMYA 229 (327)
T ss_pred HHHHHCCEEEEEEC
T ss_conf 99986998999989
No 233
>PRK12377 putative replication protein; Provisional
Probab=96.59 E-value=0.0045 Score=42.86 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=31.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 7267762131002769999999999851011123333321247975899958
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL 270 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl 270 (504)
+.=+|+.|.||.|||-+|..++..++. +|+.|+|++.
T Consensus 101 ~~NlIf~G~pGtGKTHLA~AIg~~a~~---------------~G~sVlF~t~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA---------------KGRSVIVVTV 137 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH
T ss_conf 860899899998788999999999998---------------7996999889
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.022 Score=37.63 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 98899999--9886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
.+|-.+-+ +.+|.+. .++++++.| .+.. .-+ ......|.+-|+.|+++ ++.||..|.
T Consensus 396 ~LSGGq~QRvaiAraL~--~~p~vLilD-----EPT~-GLD--~~~~~~i~~ll~~l~~~-G~tvl~ITH---------- 454 (501)
T PRK11288 396 NLSGGNQQKAILGRWLS--EDMKVILLD-----EPTR-GID--VGAKHEIYNVIYELAAQ-GVAVLVVSS---------- 454 (501)
T ss_pred HCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCCC-CCC--HHHHHHHHHHHHHHHHC-CCEEEEEEC----------
T ss_conf 28999999999999997--099989997-----9877-899--99999999999999968-999999907----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
|| ..+-+-||-|+.++.
T Consensus 455 ------Dl---~~~~~~aDRv~vm~~ 471 (501)
T PRK11288 455 ------DL---PEVLGVADRIVVMRE 471 (501)
T ss_pred ------CH---HHHHHHCCEEEEEEC
T ss_conf ------68---999986999999989
No 235
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=96.58 E-value=0.044 Score=35.35 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=75.3
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
+|-|+..-.+-. --|...-=+.|+|.||+|||.|...+...++..+.-. ...+.++-+.-. ++.
T Consensus 20 vp~G~~~~G~pv~~dl~~~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~-----------~v~l~liD~K~~--~~~-- 84 (202)
T pfam01580 20 IALGKDISGNPVVADLVKMPHLLIAGATGSGKSTFLNTLILSLAARHSPE-----------EVRLYLIDPKGG--ELA-- 84 (202)
T ss_pred EEEEECCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC-----------EEEEEEECCCCC--CHH--
T ss_conf 87776799998998635688689965899980099999999998737962-----------069999748961--267--
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCC-----CCC--CCEEEECCH
Q ss_conf 999987410110001213768899-899999998627807825899889999998864022-----444--746776713
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKR-----QRG--LDLLIVDYI 352 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-----~~g--i~~vvIDYL 352 (504)
...+++... .....+.++.. -+.....++.+-.-.+.+..--++.+.......... ... .=+|+||=.
T Consensus 85 ---~~~~~~h~~-~~~~~d~e~~~~~l~~l~~em~rR~~ll~~~g~~~i~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 160 (202)
T pfam01580 85 ---ALEDLPHLL-SAVATDPEDALSALRALVAEMERRYALLKQLGVRSIEEYNGEIAEDILGGAGWLEELPPIVVIVDER 160 (202)
T ss_pred ---HHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHH
T ss_conf ---676356544-3376899999999999999999999999983887689999986643212455433478189864459
Q ss_pred H-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 5-325664432113788999999999999882791999771
Q gi|254780332|r 353 Q-LMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 353 q-li~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
+ |+....+. ...++...-.+|-..++..+|.+|+.+|
T Consensus 161 ~~l~~~~~~~---~~~~~~~~l~~iar~GRa~GihlilatQ 198 (202)
T pfam01580 161 AELMLAAPKD---SEMRVEGALARLARMGRAAGIHLLLATQ 198 (202)
T ss_pred HHHHHHCCHH---HHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 9998655504---6899999999999988733829999818
No 236
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.58 E-value=0.0074 Score=41.24 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
.|+++.--+.||+.+.|-|++|.|||+|+--++
T Consensus 17 vL~~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~ 49 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 454769998599999999999980999999996
No 237
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=96.57 E-value=0.011 Score=39.83 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=33.5
Q ss_pred EEEECCC-CCCHHHHHHHHHHHCC-CCCCCEEEECCHHHCCCCCCCCCHHHHH-HHHHHHHHHHHHHHH-CCCEEEEEEC
Q ss_conf 0782589-9889999998864022-4447467767135325664432113788-999999999999882-7919997713
Q gi|254780332|r 318 LYIDQTG-GISMSQLATRARRLKR-QRGLDLLIVDYIQLMTTSKKIEENRVLE-ITGITMALKALAKEL-NIPIIALSQL 393 (504)
Q Consensus 318 l~I~d~~-~~ti~~I~~~~r~~~~-~~gi~~vvIDYLqli~~~~~~~~~r~~~-i~~is~~lK~lA~e~-~ipvi~lsQL 393 (504)
+.+.-.| .+.+.+-+..+..+.. ...++.|||-- ++..+... ...... ...=.+.|+.+...+ ++||+.+-.+
T Consensus 209 f~lV~~pe~~~i~Et~R~~~~L~~~~i~v~~vvvNr--vlp~~~~~-~~~~~~r~~~Q~~~L~~i~~~f~~~pi~~vpl~ 285 (304)
T pfam02374 209 FRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQ--VLPETEQD-CPFCEARKEIQQKYLKEIEELFSDLPVAKLPLL 285 (304)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 999837984379999999999997799889798807--78888898-799999999999999999986579868980588
Q ss_pred CCCC
Q ss_conf 8220
Q gi|254780332|r 394 SRQV 397 (504)
Q Consensus 394 nR~~ 397 (504)
..++
T Consensus 286 ~~Ev 289 (304)
T pfam02374 286 PEEV 289 (304)
T ss_pred CCCC
T ss_conf 8899
No 238
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.56 E-value=0.012 Score=39.50 Aligned_cols=165 Identities=22% Similarity=0.229 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 21013776556416772677621310027699999999998510111233333212479758999585217999878999
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is 283 (504)
+|=+-|+++-.-+.+|+++.|-|++|.|||+|.--++-.. .. ......|.+.....+..++.. .
T Consensus 20 ~~k~iL~~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~Gl~-~~------------~~~~G~i~~~g~~~~~~~~~~-~-- 83 (194)
T cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TG------------LGVSGEVLINGRPLDKRSFRK-I-- 83 (194)
T ss_pred CCCEEEECCEEEEECCEEEEEECCCCCHHHHHHHHHHCCC-CC------------CCCEEEEEECCEECCHHHHHH-E--
T ss_conf 9998788838899088199999899951999999985777-78------------996289999999997578431-2--
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCC
Q ss_conf 9874101100012137688998999999986278078258998899999--98864022444746776713532566443
Q gi|254780332|r 284 EQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKI 361 (504)
Q Consensus 284 ~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~ 361 (504)
.+=|+-....-+.++-.| .+.-+ ..+ .++|=.+-+ +.+|.+. +.+++++.| .+.. .
T Consensus 84 -ig~v~Q~~~l~~~ltv~e--~l~~~-a~l----------~~LSgGqrqRv~iA~aL~--~~P~illlD-----EPTs-g 141 (194)
T cd03213 84 -IGYVPQDDILHPTLTVRE--TLMFA-AKL----------RGLSGGERKRVSIALELV--SNPSLLFLD-----EPTS-G 141 (194)
T ss_pred -EEEECCCCCCCCCCCHHH--HHHHH-HHH----------CCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC-C
T ss_conf -899846652377684999--99999-872----------698889999999999996--399889994-----8987-8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 211378899999999999988279199977-1382201689999840101432422331387889725
Q gi|254780332|r 362 EENRVLEITGITMALKALAKELNIPIIALS-QLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~lA~e~~ipvi~ls-QLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
-+. ....+|.+.|+.+|++ +..||+.+ |+ +..++.-||-|++|+.
T Consensus 142 LD~--~~~~~i~~~l~~l~~~-g~tvi~~tH~~-------------------~~~~~~~~Drv~vl~~ 187 (194)
T cd03213 142 LDS--SSALQVMSLLRRLADT-GRTIICSIHQP-------------------SSEIFELFDKLLLLSQ 187 (194)
T ss_pred CCH--HHHHHHHHHHHHHHHC-CCEEEEEECCC-------------------HHHHHHHCCEEEEEEC
T ss_conf 898--9999999999999968-98999995888-------------------5999997999999989
No 239
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.56 E-value=0.041 Score=35.53 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
.+-|+++-.-+++|+++.|-|+.|.|||+|.--++- ..... ......|.|..-+++..++..| ++.
T Consensus 20 ~~vL~~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G-~~~~~-----------~~~~G~I~~~g~~~~~~~~~~~-igy- 85 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG-RVEGG-----------GTTSGQILFNGQPRKPDQFQKC-VAY- 85 (226)
T ss_pred EEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHC-CCCCC-----------CCCEEEEEECCEECCHHHHHHC-EEE-
T ss_conf 899889778991880999998999609999999967-89789-----------8414599999999987897501-899-
Q ss_pred HHHCCCCCCCCCCC------------------HHHHHHHHHHHHHHHHCCEE--EECC-CCCCHHHH--HHHHHHHCCCC
Q ss_conf 74101100012137------------------68899899999998627807--8258-99889999--99886402244
Q gi|254780332|r 286 TEVPSSKIRRGELT------------------RPDYEKIVACSQVMQKLPLY--IDQT-GGISMSQL--ATRARRLKRQR 342 (504)
Q Consensus 286 s~I~~~~i~~g~l~------------------~~e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~I--~~~~r~~~~~~ 342 (504)
|+-.....+.++ +.+..+.. ....+....+. -+.. ..+|-.+= .+.+|.+. .
T Consensus 86 --v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~LSGGqrqRv~iA~aL~--~ 160 (226)
T cd03234 86 --VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV-EDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL--W 160 (226)
T ss_pred --ECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf --91667567898899999999974676436278999999-999998758976746773328999999999999996--5
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++.| .|... -+. ....+|.+.|+.++++-.+.|+...|. .-.+.+-||-
T Consensus 161 ~P~illLD-----EPTsg-LD~--~~~~~i~~~l~~l~~~~~~vi~~~H~~-------------------~~~~~~~~Dr 213 (226)
T cd03234 161 DPKVLILD-----EPTSG-LDS--FTALNLVSTLSQLARRNRIVILTIHQP-------------------RSDLFRLFDR 213 (226)
T ss_pred CCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHCCCEEEEEECCC-------------------HHHHHHHCCE
T ss_conf 99989995-----88656-899--999999999999997899999998889-------------------8999997999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|++|+.
T Consensus 214 v~vl~~ 219 (226)
T cd03234 214 ILLLSS 219 (226)
T ss_pred EEEEEC
T ss_conf 999959
No 240
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.55 E-value=0.026 Score=37.10 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=79.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
+-|+.+.--+++|+.+.|-|++|.|||+++--++ .......... ...| .+.|.+-+- .+... +..-
T Consensus 51 pVLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~-gl~~p~~G~I-------~~~g-~i~~v~Q~~---~lf~~--Tire 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL-GELEPSEGKI-------KHSG-RISFSSQFS---WIMPG--TIKE 116 (282)
T ss_pred CEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEE-------EECC-EEEEECCCC---CCCCC--CHHH
T ss_conf 6141648998499999999999981999999995-7872786589-------9999-999865744---22671--0999
Q ss_pred HHCCCCCCCC-CCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 4101100012-13768899899999---99862780----78258-9988999--9998864022444746776713532
Q gi|254780332|r 287 EVPSSKIRRG-ELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQ--LATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 287 ~I~~~~i~~g-~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
+| .-| ..++..+..+.+++ ..+..+|- .+.+. ..+|-.+ -.+.+|.+.+ +.++++.|
T Consensus 117 NI-----~~g~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vge~G~~LSGGQkQRlaiARALl~--~p~IliLD----- 184 (282)
T cd03291 117 NI-----IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLD----- 184 (282)
T ss_pred HH-----HCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE-----
T ss_conf 97-----5168868899999999851499998463425523003677589999999999999842--89989986-----
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 56644321137889999999-9999988279199977138220168999984010143242233138788972
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMA-LKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~-lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+.+.- +...+ .+|... ++.+.+ +..||+.++ | | ..| ..||.|++|.
T Consensus 185 EpTS~L-D~~tE--~~I~~~~l~~~~~--~kTvI~ItH-------r---------L---~~i-~~aDrIiVL~ 232 (282)
T cd03291 185 SPFGYL-DVFTE--KEIFESCVCKLMA--NKTRILVTS-------K---------M---EHL-KKADKILILH 232 (282)
T ss_pred CCCCCC-CHHHH--HHHHHHHHHHHHC--CCEEEEEEC-------C---------H---HHH-HHCCEEEEEE
T ss_conf 877668-98789--9999999999868--998999937-------8---------8---889-8699999998
No 241
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.55 E-value=0.03 Score=36.59 Aligned_cols=180 Identities=14% Similarity=0.247 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHH
Q ss_conf 1013776556416772677621310027699999999998510111233333212479758999585---2179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~ 281 (504)
|...||.+---+++|+++.|.|.-|.|||++.-.++ ..-.. ....|.|.--+ ++..+...+-
T Consensus 17 ~~~al~~vs~~v~~Gei~~liGpnGaGKSTL~~~i~-Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~r~g 81 (255)
T PRK11300 17 GLLAVNNVNLEVREQEVVSLIGPNGAGKTTVFNCLT-GFYKP--------------TGGTILLDGQHIEGLPGHQIARMG 81 (255)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCC
T ss_conf 999880408898999799999899964999999996-79889--------------860899999988879999998668
Q ss_pred H---------------------HHHHHHCCCC----CCCCCCCHHHHHHHHHHHHHHHHCCEE-EECCC--CCCHHH--H
Q ss_conf 9---------------------9987410110----001213768899899999998627807-82589--988999--9
Q gi|254780332|r 282 I---------------------SEQTEVPSSK----IRRGELTRPDYEKIVACSQVMQKLPLY-IDQTG--GISMSQ--L 331 (504)
Q Consensus 282 i---------------------s~~s~I~~~~----i~~g~l~~~e~~~i~~a~~~l~~~~l~-I~d~~--~~ti~~--I 331 (504)
+ +....+.... +..+.+...+.+...++...+....+. +.+.+ .+|-.+ -
T Consensus 82 ~~~~~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~Qr 161 (255)
T PRK11300 82 VVRTFQHVRLFKEMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRR 161 (255)
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCHHHHH
T ss_conf 25532230027786487776555442022003433212520106689999999999997699213158846679488999
Q ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99886402244474677671353256644321137889999999999998827919997713822016899998401014
Q gi|254780332|r 332 ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLR 411 (504)
Q Consensus 332 ~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr 411 (504)
...+|.+. +++++++.| .|... -+ .....+|..-++.|+++.++.|+..++ |
T Consensus 162 v~iAraL~--~~P~lLlLD-----EPt~g-LD--~~~~~~i~~~i~~l~~~~g~tvl~itH----------------d-- 213 (255)
T PRK11300 162 LEIARCMV--TQPRILMLD-----EPAAG-LN--PKETKELDELIAELRNEHNVTVLLIEH----------------D-- 213 (255)
T ss_pred HHHHHHHH--HCCCEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHHHCCCCEEEEECC----------------C--
T ss_conf 99999997--299969981-----87546-99--999999999999999715979999927----------------3--
Q ss_pred CCCHHHHHCCEEEEEEC
Q ss_conf 32422331387889725
Q gi|254780332|r 412 ESGSIEQDADVVLFVIR 428 (504)
Q Consensus 412 ~Sg~IEqdAD~v~~l~R 428 (504)
-..++.-||-|+++++
T Consensus 214 -l~~v~~~aDrv~vl~~ 229 (255)
T PRK11300 214 -MKLVMGISDRIYVVNQ 229 (255)
T ss_pred -HHHHHHHCCEEEEEEC
T ss_conf -8999986999999999
No 242
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.0052 Score=42.38 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=86.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-------HHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217-------99987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-------EQLAT 279 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-------~el~~ 279 (504)
+.|+++---+.+|+++.|-|+.|.|||||+.-++- .... +...|.+....++. .++.
T Consensus 21 ~aL~~Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~G-l~~p--------------~~G~i~~~g~~i~~~~~~~~~~~~~- 84 (280)
T PRK13649 21 RALFDVNLDILDGSYTAFIGHTGSGKSTIMQLLNG-LHVP--------------TTGIVSVDDTDITSHSKNKEIKSIR- 84 (280)
T ss_pred CEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCCCHHHHHHHH-
T ss_conf 75410268987998999995999869999999966-9998--------------8608999999987778201399998-
Q ss_pred HHHHHHHHHCCCC---------C----CCCCCCHHHHH-HHHHHHHHHHHCCE---EEECCC-CCCHHHHH--HHHHHHC
Q ss_conf 8999987410110---------0----01213768899-89999999862780---782589-98899999--9886402
Q gi|254780332|r 280 RIISEQTEVPSSK---------I----RRGELTRPDYE-KIVACSQVMQKLPL---YIDQTG-GISMSQLA--TRARRLK 339 (504)
Q Consensus 280 R~is~~s~I~~~~---------i----~~g~l~~~e~~-~i~~a~~~l~~~~l---~I~d~~-~~ti~~I~--~~~r~~~ 339 (504)
|-++..-+-|... + ++-.++.++.. ++.++.. ...| +.+..| .+|-.+-+ +.++.+.
T Consensus 85 ~~iG~vfQ~p~~ql~~~tV~eev~fg~~~~g~~~~e~~~~v~~~l~---~~gL~e~~~~r~p~~LSGGqkqRvaiA~aL~ 161 (280)
T PRK13649 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSPEEAEALAREKLA---LVGISENLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7646997465212360309999986898869999999999999998---7699746654290009999999999999997
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 24447467767135325664432113788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
..+++++.| .+... -+. ....+|.+-|+.|.+ .++.||..+. | -..+.+-
T Consensus 162 --~~P~iLllD-----EPTsg-LDp--~~~~~i~~ll~~l~~-~G~Tii~vTH----------------d---l~~v~~~ 211 (280)
T PRK13649 162 --MEPKILVLD-----EPTAG-LDP--KGRKELMTIFKKLHQ-SGMTIVLVTH----------------L---MDDVANY 211 (280)
T ss_pred --CCCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHH-CCCEEEEECC----------------C---HHHHHHH
T ss_conf --499999984-----87554-899--999999999999986-3999999875----------------8---9999997
Q ss_pred CCEEEEEEC
Q ss_conf 387889725
Q gi|254780332|r 420 ADVVLFVIR 428 (504)
Q Consensus 420 AD~v~~l~R 428 (504)
||-|++|++
T Consensus 212 aDrv~vl~~ 220 (280)
T PRK13649 212 ADFVYVLEK 220 (280)
T ss_pred CCEEEEEEC
T ss_conf 999999989
No 243
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.53 E-value=0.061 Score=34.25 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=77.2
Q ss_pred HHHCCCCEEEEECCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--
Q ss_conf 64167726776213100276-999999999985101112333332124797589995852179998789999874101--
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKT-SLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPS-- 290 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKT-alalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~-- 290 (504)
.=++.|+=+||...||+||| +|.+=|..++.+.. +..-.++|-+-==.+....|+-...+.++.
T Consensus 80 ~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v 146 (851)
T COG1205 80 RLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------------SARALLLYPTNALANDQAERLRELISDLPGKV 146 (851)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-------------CCEEEEEECHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99977998899789988545898999999983086-------------65089980437767669999999998478751
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCC-EEEECCCCCCHHHHHHHHHHHC-----CCCCCCEEEECCHHHCCCCCCCCC
Q ss_conf -100012137688998999999986278-0782589988999999886402-----244474677671353256644321
Q gi|254780332|r 291 -SKIRRGELTRPDYEKIVACSQVMQKLP-LYIDQTGGISMSQLATRARRLK-----RQRGLDLLIVDYIQLMTTSKKIEE 363 (504)
Q Consensus 291 -~~i~~g~l~~~e~~~i~~a~~~l~~~~-l~I~d~~~~ti~~I~~~~r~~~-----~~~gi~~vvIDYLqli~~~~~~~~ 363 (504)
-.+.+|+...++.+ ..+.+-| +.+ - |.+-+-..+.+.+ ....+++||||=++--++.. +
T Consensus 147 ~~~~y~Gdt~~~~r~------~~~~~pp~Ill-T----NpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~--G- 212 (851)
T COG1205 147 TFGRYTGDTPPEERR------AIIRNPPDILL-T----NPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ--G- 212 (851)
T ss_pred EEEEECCCCCHHHHH------HHHHCCCCEEE-E----CHHHHHHHHHCCCCCHHHHHHCCCEEEEECCEECCCCH--H-
T ss_conf 354434889678889------98738997898-3----88999898636882278887327589984441215603--7-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC--CEEEEE
Q ss_conf 1378899999999999988279--199977
Q gi|254780332|r 364 NRVLEITGITMALKALAKELNI--PIIALS 391 (504)
Q Consensus 364 ~r~~~i~~is~~lK~lA~e~~i--pvi~ls 391 (504)
..|+.+.|.|+.+++-++- -+|+.|
T Consensus 213 ---S~vA~llRRL~~~~~~~~~~~q~i~~S 239 (851)
T COG1205 213 ---SEVALLLRRLLRRLRRYGSPLQIICTS 239 (851)
T ss_pred ---HHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf ---889999999999972458996289983
No 244
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=96.53 E-value=0.022 Score=37.61 Aligned_cols=173 Identities=12% Similarity=0.177 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHH
Q ss_conf 137765564167726776213100276999999999985101112333332124797589995852---17999878999
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIIS 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is 283 (504)
..|+++---+.+|+++.|.|+.|.|||++.--++- .... ....|.+.--+. +..+.+.|-++
T Consensus 17 ~~l~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~G-l~~~--------------~~G~I~i~g~~i~~~~~~~~~~~~ig 81 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG-IVPR--------------DAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHHCCEE
T ss_conf 99952078983997999988999869999999967-8888--------------87627763452344898899857769
Q ss_pred HHHH-------------H-CCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEE-EECC--CCCCHHH--HHHHHHHHCCCCC
Q ss_conf 9874-------------1-01100012137688-99899999998627807-8258--9988999--9998864022444
Q gi|254780332|r 284 EQTE-------------V-PSSKIRRGELTRPD-YEKIVACSQVMQKLPLY-IDQT--GGISMSQ--LATRARRLKRQRG 343 (504)
Q Consensus 284 ~~s~-------------I-~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~-I~d~--~~~ti~~--I~~~~r~~~~~~g 343 (504)
...+ + ....++. .++.++ .+++.+..+. ..+. ..+. ..+|-.+ -.+.+|.+. ++
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSgG~kqrv~iAraL~--~~ 155 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRD-DLSAEQREDRANELMEE---FHIEHLRDSMGQSLSGGERRRVEIARALA--AN 155 (241)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH---CCCHHHHCCCHHHCCHHHHHHHHHHHHHH--CC
T ss_conf 96243545778889999999999844-89989999999999997---79914641106668988899999999996--69
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
+++++.| .|... -+. ....++.+-++.+ ++.++.|+..++ | -..+++-||-|
T Consensus 156 P~illLD-----EPt~g-LD~--~~~~~i~~~l~~l-~~~g~tvl~~tH----------------d---l~~~~~~~drv 207 (241)
T PRK10895 156 PKFILLD-----EPFAG-VDP--ISVIDIKRIIEHL-RDSGLGVLITDH----------------N---VRETLAVCERA 207 (241)
T ss_pred CCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHH-HHCCCEEEEECC----------------C---HHHHHHHCCEE
T ss_conf 9889995-----87547-999--9999999999999-964999999907----------------2---99999979999
Q ss_pred EEEEC
Q ss_conf 89725
Q gi|254780332|r 424 LFVIR 428 (504)
Q Consensus 424 ~~l~R 428 (504)
++++.
T Consensus 208 ~vl~~ 212 (241)
T PRK10895 208 YIVSQ 212 (241)
T ss_pred EEEEC
T ss_conf 99989
No 245
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.51 E-value=0.047 Score=35.10 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC----CHHHHH--H
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852----179998--7
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM----SSEQLA--T 279 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM----s~~el~--~ 279 (504)
-..|+++.--+.+|+++.|-|..|.|||||+..++- .... ....|.+.-.+. +...+. .
T Consensus 20 ~~aL~~vsl~I~~Ge~~~iiG~nGsGKSTLl~~l~G-ll~P--------------~sG~V~i~G~~i~~~~~~~~~~~~r 84 (286)
T PRK13641 20 KKGLDNISFELEDGSFVALIGHTGSGKSTLMQHFNA-LLKP--------------SSGKITIAGYHITPETSNKNLKDLR 84 (286)
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCEEEEECCEECCCCCCHHHHHHHH
T ss_conf 412431067986999999999998399999999965-9898--------------8549999989997666555799998
Q ss_pred HHHHHHHHHCCCC---------CCCC----CCCHHHHHHHHHHHHHHHHCCEE--EEC-CC-CCCHHHHH--HHHHHHCC
Q ss_conf 8999987410110---------0012----13768899899999998627807--825-89-98899999--98864022
Q gi|254780332|r 280 RIISEQTEVPSSK---------IRRG----ELTRPDYEKIVACSQVMQKLPLY--IDQ-TG-GISMSQLA--TRARRLKR 340 (504)
Q Consensus 280 R~is~~s~I~~~~---------i~~g----~l~~~e~~~i~~a~~~l~~~~l~--I~d-~~-~~ti~~I~--~~~r~~~~ 340 (504)
|-++..-+-|... +.-| .++.++. ..++...+....+. +.+ .| .+|-.+-+ +.++.+.
T Consensus 85 ~~vg~vfQ~p~~ql~~~tV~eev~~g~~~~g~~~~e~--~~~~~~~l~~vgl~~~~~~~~p~~LSGGqkqRvaiA~aLa- 161 (286)
T PRK13641 85 KKVGLVFQFPEAQLFENTVLKDVEFGPKNFGFSEQEA--KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA- 161 (286)
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHH-
T ss_conf 5154897665101261129999999999869998999--9999999997699645554291329999999999999997-
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 44474677671353256644321137889999999999998827919997713822016899998401014324223313
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
.++++++.| .+... -+ .....+|..-||.+.++ +..||..++ | -..+.+-|
T Consensus 162 -~~P~iLlLD-----EPTsg-LD--p~~~~~i~~ll~~l~~~-G~Tii~vtH----------------d---~~~v~~~a 212 (286)
T PRK13641 162 -YEPEILCLD-----EPAAG-LD--PEGRKEMMQIFKDYQKA-GHTVILVTH----------------N---MDDVAEYA 212 (286)
T ss_pred -CCCCEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHHHC-CCEEEEECC----------------C---HHHHHHHC
T ss_conf -499999973-----97343-89--99999999999999963-999999915----------------9---99999979
Q ss_pred CEEEEEEC
Q ss_conf 87889725
Q gi|254780332|r 421 DVVLFVIR 428 (504)
Q Consensus 421 D~v~~l~R 428 (504)
|-|+.++.
T Consensus 213 drv~vm~~ 220 (286)
T PRK13641 213 DDVLVLEH 220 (286)
T ss_pred CEEEEEEC
T ss_conf 99999989
No 246
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=96.49 E-value=0.035 Score=36.06 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=45.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 677621310027699999999998510111233333212479758999585217999878999987410110001213
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGEL 298 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l 298 (504)
++||+|.+|.|||||..++..+. ..|.+++++--|++...+=..+++. .+++...+.+|-+
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~----------------~~~~~~avI~Ne~g~~~iD~~ll~~-~~~~v~el~~Gci 62 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDN----------------REGLKIAVIVNDFGETGIDAELLRE-TGAEIVELNNGCI 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC----------------CCCCCEEEEEECCCCHHHHHHHHHH-CCCEEEEECCCCC
T ss_conf 69993488788999999999844----------------4898479999336530207999870-6961899748866
No 247
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.49 E-value=0.061 Score=34.21 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=70.5
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH------HHHHHCC---
Q ss_conf 677621-310027699999999998510111233333212479758999585217999878999------9874101---
Q gi|254780332|r 221 LIIIAG-RPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS------EQTEVPS--- 290 (504)
Q Consensus 221 l~Viaa-rpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is------~~s~I~~--- 290 (504)
.++||- .-|+|||+.++|+|...|. +|++|+.+-+.-... -..|++. ...+++.
T Consensus 2 IIaVaNqKGGvGKTTtavnLA~aLA~---------------~G~rVllIDlDpqq~-slt~~l~nr~~~~~~~~~~l~~P 65 (261)
T pfam09140 2 VIVVGNEKGGSGKSTTAVHVAVALLY---------------LGARVATIDLDLRQR-TLTRYIENRAATAERTGLDLPVP 65 (261)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 79997178987299999999999998---------------899789997999998-51234430355655138653466
Q ss_pred -C-CCCCC--CC---CHHHHHHHHHHHHHHHH-CCEEEECCC-CCCHHHHHHHHHHHCCCCCC--CEEEECCHHHCCCCC
Q ss_conf -1-00012--13---76889989999999862-780782589-98899999988640224447--467767135325664
Q gi|254780332|r 291 -S-KIRRG--EL---TRPDYEKIVACSQVMQK-LPLYIDQTG-GISMSQLATRARRLKRQRGL--DLLIVDYIQLMTTSK 359 (504)
Q Consensus 291 -~-~i~~g--~l---~~~e~~~i~~a~~~l~~-~~l~I~d~~-~~ti~~I~~~~r~~~~~~gi--~~vvIDYLqli~~~~ 359 (504)
. .+... .+ ...+..++.++...+.. +-+.|-||| +++.-.+.+.+..=.-=-.+ .++-.|-|.-+.+..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~~L~~al~~l~~~yDfIlIDcPPsl~~Lt~nAl~aAD~vIiPlq~sf~dld~L~~vd~~~ 145 (261)
T pfam09140 66 KHLCLPDDVSEVFDGESADDARLEEAVADLEQDADFIVIDTPGSDSPLSRLAHSRADTLVTPLNDSFVDFDLLGQVDPET 145 (261)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHCCHHH
T ss_conf 53445506777613455789999999999875799999969985739999999983987632440155143352137034
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 4--321137889999999999998827919997
Q gi|254780332|r 360 K--IEENRVLEITGITMALKALAKELNIPIIAL 390 (504)
Q Consensus 360 ~--~~~~r~~~i~~is~~lK~lA~e~~ipvi~l 390 (504)
. .+-+.|.|.=.=.|+.+..+.--.|.+|++
T Consensus 146 ~~i~~~s~y~e~vw~~r~~ra~~~~~~idwivl 178 (261)
T pfam09140 146 FKVTRPSFYAEMVWEARKKRAQADRAPIDWIVL 178 (261)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 321362178999999999874368988647998
No 248
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.48 E-value=0.046 Score=35.15 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
-|+++.--+.+|+++.|.|+-|.|||||.--++
T Consensus 16 vl~~is~~i~~G~i~~l~G~NGaGKSTLlkli~ 48 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 881227898799799998899987999999997
No 249
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.48 E-value=0.097 Score=32.69 Aligned_cols=42 Identities=7% Similarity=0.080 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 1376889989999999862780782589--98899999988640
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTG--GISMSQLATRARRL 338 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti~~I~~~~r~~ 338 (504)
.|+-.|..++.-|.--+.+.++.|-|.| .+.+..+.+....+
T Consensus 445 ~LSGGek~Rv~lA~~l~~~p~lLiLDEPTn~LDi~s~e~Le~aL 488 (556)
T PRK11819 445 VLSGGERNRLHLAKTLKSGGNVLLLDEPTNDLDVETLRALEDAL 488 (556)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 18899999999999996298989992977567999999999999
No 250
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.48 E-value=0.02 Score=37.94 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
|+++---+++|+.+.|-|+.|+|||+|.--++
T Consensus 16 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~ 47 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 95307888799599999999999999999996
No 251
>PRK05667 dnaG DNA primase; Validated
Probab=96.48 E-value=0.097 Score=32.69 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=21.1
Q ss_pred CCCEEEEECCCH------------------HHHHHHHHHHHHHHHHHCCC
Q ss_conf 772677621310------------------02769999999999851011
Q gi|254780332|r 218 RSDLIIIAGRPG------------------MGKTSLATNIAYNVADAYKA 249 (504)
Q Consensus 218 ~G~l~Viaarpg------------------~GKTalalniA~~~A~~~~~ 249 (504)
.|.++-+|||.= -|+..+.++.|....+....
T Consensus 210 ~G~vIgFgGR~l~~~~~pKYlNSpET~lF~K~~~Lygl~~A~~~i~~~~~ 259 (600)
T PRK05667 210 RGRVIGFGGRVLGKDDEPKYLNSPETPLFHKGRELYGLDEARKAIAKKDR 259 (600)
T ss_pred CCCEEEEECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99876441203488899870179887340101688635899998623585
No 252
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.47 E-value=0.067 Score=33.94 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
|+.+---+.+|+.+.|-|.-|.|||||.--++
T Consensus 27 l~~isf~v~~Ge~~~l~GpNGaGKTTLlr~l~ 58 (214)
T PRK13543 27 FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 82638898189899999999987999999997
No 253
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.47 E-value=0.008 Score=40.94 Aligned_cols=172 Identities=17% Similarity=0.235 Sum_probs=84.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958---521799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~~ 285 (504)
|+.+---+++|+++.|.|+.|+|||+|+--++- .-.. ....|.|-.- .++.+++. +.++..
T Consensus 23 L~~is~~i~~Ge~~~i~G~sGsGKSTLlk~i~g-l~~p--------------~~G~I~~~g~~i~~~~~~~~r-~~i~~v 86 (225)
T PRK10247 23 LNNINFSLRAGEFKLITGPSGCGKSTLLKIVAS-LISP--------------TSGTLLFEGEDISTLKPEIYR-QQVSYC 86 (225)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHH-HHCCEE
T ss_conf 945179985996999999999999999999964-6688--------------876599999997749999998-527457
Q ss_pred HHHCC-------CCCCCC---CCCHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHH--HHHHHHHCCCCCCCEEEECCH
Q ss_conf 74101-------100012---137688998999999986278078258-99889999--998864022444746776713
Q gi|254780332|r 286 TEVPS-------SKIRRG---ELTRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQL--ATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 286 s~I~~-------~~i~~g---~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~vvIDYL 352 (504)
.+-|. ..+.-+ .-...+..++......+.-..-+.... ..+|-.+- .+.+|.+. ..+++++.|
T Consensus 87 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSGGqkQRv~iARaL~--~~p~iLllD-- 162 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ--FMPKVLLLD-- 162 (225)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE--
T ss_conf 0455434153999998578766766789999999987599566761881118999999999999986--099999995--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 53256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
.+... -+. ..-..|..-++.++++.++.||..+. |+. .++ .||-|+.|
T Consensus 163 ---EPts~-LD~--~~~~~i~~~i~~l~~~~~~tvi~vtH----------------d~~---~~~-~aDrIivL 210 (225)
T PRK10247 163 ---EITSA-LDE--SNKHNVNEIIHRYVREQNIAVLWVTH----------------DKD---EIN-HADKVITL 210 (225)
T ss_pred ---CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEEEC----------------CHH---HHH-CCCEEEEE
T ss_conf ---97666-899--99999999999999838989999903----------------999---997-09989999
No 254
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.46 E-value=0.099 Score=32.62 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797589995852179998789999874101100012
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g 296 (504)
.++.+-+|-|+.|-|||++ |--|.-+.. .+|+.|.=.+| .-.+..-+...+||....|.+-
T Consensus 360 ~~~~iavVvG~AGtGKStm-L~aAReawE--------------a~GyrV~GaAL----sGkAAegLe~~sGI~SrTlAs~ 420 (992)
T PRK13889 360 DGRDLGVVVGYAGTGKSAM-LGVAREAWE--------------AAGYEVRGAAL----SGIAAENLEGGSGIASRTIASL 420 (992)
T ss_pred CCCCEEEEEECCCCCHHHH-HHHHHHHHH--------------HCCCEEEEECC----CHHHHHHHHHCCCCCCHHHHHH
T ss_conf 7897589983388878899-999999999--------------77988981150----0689997653479431679999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE-CCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 13768899899999998627807825899889999998864022444746776-71353256644321137889999999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIV-DYIQLMTTSKKIEENRVLEITGITMA 375 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvI-DYLqli~~~~~~~~~r~~~i~~is~~ 375 (504)
...| ......+...-++|.|..++--..-.+.+-+...+.|-++|.| |.-||=.... . . .
T Consensus 421 ---e~~w---~~g~~~L~~~dVlVVDEAGMVgSRqMarll~~Ae~AGAKVVLVGD~~QLq~IeA-G--a----------a 481 (992)
T PRK13889 421 ---EHGW---GQGRDLLTARDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEA-G--A----------A 481 (992)
T ss_pred ---HHHH---HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCC-C--H----------H
T ss_conf ---9987---467334789858999676557749999999999984998999488777188646-8--8----------9
Q ss_pred HHHHHHHHCCCEEEEEECCCCC
Q ss_conf 9999988279199977138220
Q gi|254780332|r 376 LKALAKELNIPIIALSQLSRQV 397 (504)
Q Consensus 376 lK~lA~e~~ipvi~lsQLnR~~ 397 (504)
++.|+...+. ..|+++.|+-
T Consensus 482 Fral~er~G~--aeLteIrRQr 501 (992)
T PRK13889 482 FRSIHERHGG--AEIGEVRRQR 501 (992)
T ss_pred HHHHHHHCCC--EEEEHEECCC
T ss_conf 9999985196--7510222148
No 255
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.46 E-value=0.072 Score=33.68 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHCCC--CC-CCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCH---HHHHHHHHHHCCCCC
Q ss_conf 1799987899998741011--00-012-13768899899999998627807825899--889---999998864022444
Q gi|254780332|r 273 SSEQLATRIISEQTEVPSS--KI-RRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISM---SQLATRARRLKRQRG 343 (504)
Q Consensus 273 s~~el~~R~is~~s~I~~~--~i-~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti---~~I~~~~r~~~~~~g 343 (504)
+.++...|.......+.+. .. +.+ .|+-.+..++.-|..-..+-.+.|.|.|. +.+ .+|...++.+++++|
T Consensus 435 ~~~~~~~rv~~ll~~vgL~~~~~~r~P~eLSGGqrQRv~IAraL~~~P~lLI~DEPTs~LDv~~qa~il~Ll~~L~~~~g 514 (623)
T PRK10261 435 PGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 88999999999998739986783688201899999999999999969999999688666799999999999999999729
Q ss_pred CCEEEEC
Q ss_conf 7467767
Q gi|254780332|r 344 LDLLIVD 350 (504)
Q Consensus 344 i~~vvID 350 (504)
+-++||=
T Consensus 515 ~til~Is 521 (623)
T PRK10261 515 IAYLFIS 521 (623)
T ss_pred CEEEEEC
T ss_conf 8999986
No 256
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.46 E-value=0.033 Score=36.28 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNI 239 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalni 239 (504)
-|+++.--+.+|+.+.|-|+.|+|||+|.--+
T Consensus 16 il~~isl~i~~Ge~v~i~G~sGsGKSTLl~~l 47 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL 47 (166)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89445889889999999958999889999998
No 257
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.45 E-value=0.025 Score=37.17 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=99.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH--HH-
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521799987899--99-
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRII--SE- 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~i--s~- 284 (504)
-|+.+.--+.+|+++.|-|.-|+||||+.-.++.-.. ... -.....|+++. +|+..+++.++- .+
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~-p~~-------G~V~l~g~~i~----~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKS-------GEVLLDGKDIA----SLSPKELAKKLAYVPQS 84 (258)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCC-------CEEEECCCCHH----HCCHHHHHHHEEEECCC
T ss_conf 8722368865997999989988899999999865678-888-------77999997245----46988875618993567
Q ss_pred --------------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE---EECCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf --------------87410110001213768899899999998627807---8258998899999988640224447467
Q gi|254780332|r 285 --------------QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY---IDQTGGISMSQLATRARRLKRQRGLDLL 347 (504)
Q Consensus 285 --------------~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~---I~d~~~~ti~~I~~~~r~~~~~~gi~~v 347 (504)
.++.|+..... ..+.++.+.+.++.+.+.-..+- +++-++ ---+....+|.+.+ ..+++
T Consensus 85 ~~~~~~~tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSG-GerQrv~iAraLaQ--~~~iL 160 (258)
T COG1120 85 PSAPFGLTVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSG-GERQRVLIARALAQ--ETPIL 160 (258)
T ss_pred CCCCCCCEEEEHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCH-HHHHHHHHHHHHHC--CCCEE
T ss_conf 8899995873617426774655335-78876899999999982947776685511686-68899999999845--89978
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 767135325664432113788999999999999882791999-7713822016899998401014324223313878897
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIA-LSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~-lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
+.| .+.. .-+=++| + ++..-+|.++++-+..||+ +..||=.. .-||-+++|
T Consensus 161 LLD-----EPTs-~LDi~~Q-~-evl~ll~~l~~~~g~tvv~vlHDln~A~--------------------ryad~~i~l 212 (258)
T COG1120 161 LLD-----EPTS-HLDIAHQ-I-EVLELLRDLNREKGLTVVMVLHDLNLAA--------------------RYADHLILL 212 (258)
T ss_pred EEC-----CCCC-CCCHHHH-H-HHHHHHHHHHHHCCCEEEEEECCHHHHH--------------------HHCCEEEEE
T ss_conf 827-----9720-0387779-9-9999999999855978999955988999--------------------747889999
Q ss_pred ECH
Q ss_conf 255
Q gi|254780332|r 427 IRD 429 (504)
Q Consensus 427 ~R~ 429 (504)
..-
T Consensus 213 ~~G 215 (258)
T COG1120 213 KDG 215 (258)
T ss_pred ECC
T ss_conf 799
No 258
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.45 E-value=0.036 Score=36.02 Aligned_cols=179 Identities=22% Similarity=0.280 Sum_probs=86.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321--247975899958521799987899998
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK--TINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~--~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
.|+.+---+.+|+++.|.|+.|.|||||+--++- ................ ....+.+.|..-+. ..++... +..
T Consensus 15 vL~~vsl~i~~Gei~~iiG~nGaGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~ig~v~Q~~-~~~l~~~--tv~ 90 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQDV-DYQLFTD--SVR 90 (205)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCHHHHHCCEEEEEECC-CCCCCHH--HHH
T ss_conf 8640378886998999988999989999999956-85777873899999996578744489996278-6442064--799
Q ss_pred HHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCEEE-EC-C-CCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf 74101100012-137688998999999986278078-25-8-9988999--99988640224447467767135325664
Q gi|254780332|r 286 TEVPSSKIRRG-ELTRPDYEKIVACSQVMQKLPLYI-DQ-T-GGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 286 s~I~~~~i~~g-~l~~~e~~~i~~a~~~l~~~~l~I-~d-~-~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
.. +..+ .......+++.+..+.+ .|.- .+ . ..+|=.+ -.+.+|.+. .++++++.| .|..
T Consensus 91 ~~-----l~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSGGqkQrv~iA~aL~--~~P~illLD-----EPt~ 155 (205)
T cd03226 91 EE-----LLLGLKELDAGNEQAETVLKDL---DLYALKERHPLSLSGGQKQRLAIAAALL--SGKDLLIFD-----EPTS 155 (205)
T ss_pred HH-----HHHCCCCCCCHHHHHHHHHHHC---CCCHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC
T ss_conf 99-----9704878560799999999976---9923553891128999999999999997--599999997-----9976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
. -+. ....+|.+-++.++++ +..||..++ |+ ..+++-||-|++|+.
T Consensus 156 g-LD~--~~~~~i~~ll~~l~~~-g~tvi~itH----------------dl---~~~~~~~dri~vl~~ 201 (205)
T cd03226 156 G-LDY--KNMERVGELIRELAAQ-GKAVIVITH----------------DY---EFLAKVCDRVLLLAN 201 (205)
T ss_pred C-CCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------------CH---HHHHHHCCEEEEEEC
T ss_conf 5-899--9999999999999979-999999803----------------98---999997999999819
No 259
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=96.44 E-value=0.1 Score=32.55 Aligned_cols=127 Identities=20% Similarity=0.346 Sum_probs=68.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---------CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 67762131002769999999999851011123333321247975899958---------521799987899998741011
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---------EMSSEQLATRIISEQTEVPSS 291 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---------EMs~~el~~R~is~~s~I~~~ 291 (504)
++|-|-.+++|||.+++-++....+ +|.+|.||=. +-+.-+. +...++++..
T Consensus 2 ifI~GT~T~vGKT~vt~~L~~~l~~---------------~G~~v~~~KPv~tG~~~~~~~~Da~~----~~~~~~~~~~ 62 (223)
T PRK00090 2 LFVTGTDTGVGKTVVTAALAQALRE---------------QGYRVAGYKPVQSGCDGGLRNGDALA----LQRLSGLPLD 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEECEEEECCCCCCCCHHHHH----HHHHHCCCCC
T ss_conf 8998689997699999999999997---------------89948997512048988997279999----9998089998
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH-HCCCCCCCCC
Q ss_conf -------00012137688998999999986278078258998899999988640224447467767135-3256644321
Q gi|254780332|r 292 -------KIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ-LMTTSKKIEE 363 (504)
Q Consensus 292 -------~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq-li~~~~~~~~ 363 (504)
.+..+ +++. -|. +. +...+..+.|...++++..+ -|+++|.--+ ++.+-..
T Consensus 63 ~~~~~p~~~~~p-~sP~------~aa-~~--------~g~~i~~~~i~~~~~~l~~~--~d~vlvEGaGGl~~Pl~~--- 121 (223)
T PRK00090 63 YELVNPYRFEEP-LSPH------LAA-RL--------EGVTIDLEKISAALRELAQQ--ADLVLVEGAGGLLVPLTD--- 121 (223)
T ss_pred HHHHCCCCCCCC-CCHH------HHH-HH--------HCCCCCHHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCC---
T ss_conf 676054025889-8989------999-99--------09846899999999999831--898999468865567567---
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 137889999999999998827919997713822
Q gi|254780332|r 364 NRVLEITGITMALKALAKELNIPIIALSQLSRQ 396 (504)
Q Consensus 364 ~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~ 396 (504)
+ . .+-.+|++++.|||+.+-...+
T Consensus 122 ~--~-------~~~Dla~~l~~pvILV~~~~lG 145 (223)
T PRK00090 122 D--L-------TLADLAAQLQLPVILVVGVKLG 145 (223)
T ss_pred C--C-------CHHHHHHHHCCCEEEEECCCCC
T ss_conf 8--7-------8899999968898999769888
No 260
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.067 Score=33.91 Aligned_cols=173 Identities=17% Similarity=0.266 Sum_probs=83.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
.|+.+.--+.+|+.+.|-|++|.||||++--+. ..-.. +...|.+--. +.+...+.. .++.
T Consensus 16 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~idg~di~~~~~~~~r~-~i~~ 79 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDV--------------SSGSILIDGQDIREVTLDSLRR-AIGV 79 (236)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHC-CCCCC--------------CCCEEEECCEECCCCCHHHHHH-CEEE
T ss_conf 330568998699999999999998999999974-38548--------------8748999999923189999972-3789
Q ss_pred HHHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCCE----EEECC-CCCCHHHHH--HHHHHHCCCCCCC
Q ss_conf 87410-------1100012--13768899899999---99862780----78258-998899999--9886402244474
Q gi|254780332|r 285 QTEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLPL----YIDQT-GGISMSQLA--TRARRLKRQRGLD 345 (504)
Q Consensus 285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~l----~I~d~-~~~ti~~I~--~~~r~~~~~~gi~ 345 (504)
..+-+ ...|.-| ..+++++.+..+.. ..+..+|- .|.+. ..+|-.+.. +.+|.+.+ ..+
T Consensus 80 v~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~~~~~~~l~~~i~~lp~gl~t~ig~~g~~LSgGQ~QrialARal~~--~~~ 157 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPP 157 (236)
T ss_pred EECCCEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 950780116758998865677799999999999850024554487666766278888269999999999999964--999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .+.+.- +... -..|...|+.+.+ +..||..++ | -..+ ..||-|++
T Consensus 158 ililD-----Epts~L-D~~t--e~~i~~~l~~~~~--~~Tvi~itH-------r------------~~~~-~~~D~Iiv 207 (236)
T cd03253 158 ILLLD-----EATSAL-DTHT--EREIQAALRDVSK--GRTTIVIAH-------R------------LSTI-VNADKIIV 207 (236)
T ss_pred EEEEE-----CCCCCC-CHHH--HHHHHHHHHHHHC--CCEEEEECC-------C------------HHHH-HHCCEEEE
T ss_conf 99996-----875679-9899--9999999999809--998999826-------8------------7889-85999999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
|..
T Consensus 208 l~~ 210 (236)
T cd03253 208 LKD 210 (236)
T ss_pred EEC
T ss_conf 989
No 261
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.43 E-value=0.03 Score=36.59 Aligned_cols=178 Identities=24% Similarity=0.311 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE--CCCCHHHHHH--HH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995--8521799987--89
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS--LEMSSEQLAT--RI 281 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS--lEMs~~el~~--R~ 281 (504)
...+|++---+++|+..-|-|-+|+|||+++--++-=. ...+..+.|.- +.|+..++.. |-
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~---------------~P~~G~i~~~g~~~~~~~~~~~~~r~~ 368 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL---------------PPSSGSIIFDGQDLDLTGGELRRLRRR 368 (539)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC---------------CCCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 01230124576388789998899999899999994877---------------888844999276556552314552420
Q ss_pred HHHHHHHCCCC--------------CC-CCCCCHHHHH-HHHHHHHHHHHCC-EEEECCC-CCCHHHH--HHHHHHHCCC
Q ss_conf 99987410110--------------00-1213768899-8999999986278-0782589-9889999--9988640224
Q gi|254780332|r 282 ISEQTEVPSSK--------------IR-RGELTRPDYE-KIVACSQVMQKLP-LYIDQTG-GISMSQL--ATRARRLKRQ 341 (504)
Q Consensus 282 is~~s~I~~~~--------------i~-~g~l~~~e~~-~i~~a~~~l~~~~-l~I~d~~-~~ti~~I--~~~~r~~~~~ 341 (504)
+-+.-.=|+.- +. .+.....++. ++.+...... ++ =+.+-.| .+|=.|- .+.+|.+.
T Consensus 369 ~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg-L~~~~l~ryP~elSGGQrQRvaIARALa-- 445 (539)
T COG1123 369 IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG-LPPEFLDRYPHELSGGQRQRVAIARALA-- 445 (539)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCHHHHHCCCCCCCCCHHHHHHHHHHHH--
T ss_conf 3799967623367000699998747865066516789999999998719-9978971386003852567899999985--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
..++++|-| .+.+. -+-.. -+.|.+-||.|-+|+++..+..|. | =.-+++-||
T Consensus 446 ~~P~lli~D-----Ep~Sa-LDvsv--qa~VlnLl~~lq~e~g~t~lfISH----------------D---l~vV~~i~d 498 (539)
T COG1123 446 LEPKLLILD-----EPVSA-LDVSV--QAQVLNLLKDLQEELGLTYLFISH----------------D---LAVVRYIAD 498 (539)
T ss_pred CCCCEEEEC-----CCCCC-CCHHH--HHHHHHHHHHHHHHHCCEEEEEEC----------------C---HHHHHHHCC
T ss_conf 499899964-----87432-27899--999999999999974988999958----------------7---899986386
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
-|+.+|+
T Consensus 499 rv~vm~~ 505 (539)
T COG1123 499 RVAVMYD 505 (539)
T ss_pred EEEEEEC
T ss_conf 6899978
No 262
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=96.42 E-value=0.033 Score=36.24 Aligned_cols=176 Identities=18% Similarity=0.216 Sum_probs=88.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC--------CCCHHHHH
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958--------52179998
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL--------EMSSEQLA 278 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl--------EMs~~el~ 278 (504)
..||++---+++|+.+.|.|+.|.|||+|+--++- ... .+...|.|..- .++..+
T Consensus 20 ~aL~~Vs~~v~~GEi~~iiG~nGaGKSTLl~~i~G-~~~--------------p~~G~I~~~g~~~~~~~~~~~~~~~-- 82 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA-RLA--------------PDAGEVHYRMRDGQLRDLYALSEAE-- 82 (258)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--------------CCCCEEEECCCCCCCCCHHHCCHHH--
T ss_conf 88712277887997999988899889999999856-788--------------8887399746115767734459999--
Q ss_pred HHHHH-HHHHH----CCCCCCCC-----C-------CCHHHHHHH-HHHHHHHHHCCE---EEECCC-CCCHHH--HHHH
Q ss_conf 78999-98741----01100012-----1-------376889989-999999862780---782589-988999--9998
Q gi|254780332|r 279 TRIIS-EQTEV----PSSKIRRG-----E-------LTRPDYEKI-VACSQVMQKLPL---YIDQTG-GISMSQ--LATR 334 (504)
Q Consensus 279 ~R~is-~~s~I----~~~~i~~g-----~-------l~~~e~~~i-~~a~~~l~~~~l---~I~d~~-~~ti~~--I~~~ 334 (504)
.|.+. ...++ +...+.-. + .....+..+ ..+...+....+ .+++.| .+|=.+ -.+.
T Consensus 83 ~~~~~r~~~g~v~Q~~~~~l~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDASRIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHHHCCEEEEEECHHHCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHH
T ss_conf 99886324168872554446853168788767888615534678999999999871376767650622147899999999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86402244474677671353256644321137889999999999998827919997713822016899998401014324
Q gi|254780332|r 335 ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG 414 (504)
Q Consensus 335 ~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg 414 (504)
+|.+. .++++++.| .+... -+- ..-.+|..-|+.|+++.++.||..++ | =.
T Consensus 163 AraL~--~~P~llllD-----EPtsg-LD~--~~~~~i~~~l~~l~~~~g~til~vtH----------------d---l~ 213 (258)
T PRK11701 163 ARNLV--THPRLVFMD-----EPTGG-LDV--SVQARLLDLLRGLVVELGLAVVIVTH----------------D---LA 213 (258)
T ss_pred HHHHH--CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HH
T ss_conf 99986--499999985-----98656-899--99999999999999960989999937----------------8---89
Q ss_pred HHHHHCCEEEEEEC
Q ss_conf 22331387889725
Q gi|254780332|r 415 SIEQDADVVLFVIR 428 (504)
Q Consensus 415 ~IEqdAD~v~~l~R 428 (504)
.+++-||-|+.|+.
T Consensus 214 ~~~~laDri~vl~~ 227 (258)
T PRK11701 214 VARLLAHRLLVMKQ 227 (258)
T ss_pred HHHHHCCEEEEEEC
T ss_conf 99997999999989
No 263
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.40 E-value=0.023 Score=37.44 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=78.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789999874101100012137
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT 299 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~ 299 (504)
.+++|-|-||.|||.+++++....+.. ..+.++.|.|--=+......+.++...+.....+..+
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~-------------~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~--- 65 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELSDS-------------DLGRTAVFLSGNHPLVLVLYEALAGDLKVRKKKLFRK--- 65 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-------------CCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCC---
T ss_conf 799997779938999999999998644-------------0268208995786699999999860412001020007---
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCC------------CCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHH
Q ss_conf 68899899999998627807825899------------889999998864022444746776713532566443211378
Q gi|254780332|r 300 RPDYEKIVACSQVMQKLPLYIDQTGG------------ISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVL 367 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~~l~I~d~~~------------~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~ 367 (504)
...+ +......-....+.|.|.+- ...++|...+++ ..+-++|+|--|-|.+.....
T Consensus 66 ~~~f--i~~~~~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~----a~v~V~~~D~~Q~i~~~e~g~----- 134 (348)
T pfam09848 66 PTSF--INNLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKR----AKVVVFFIDEGQEINTGEIGT----- 134 (348)
T ss_pred CHHH--HCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHH----CCEEEEEECCCCEECCCCCCC-----
T ss_conf 2523--16523579867789983178665433655677857999999975----285999987984881113768-----
Q ss_pred HHHHHHHHHHHHHHHHCCCEE---EEEEC
Q ss_conf 899999999999988279199---97713
Q gi|254780332|r 368 EITGITMALKALAKELNIPII---ALSQL 393 (504)
Q Consensus 368 ~i~~is~~lK~lA~e~~ipvi---~lsQL 393 (504)
...|+.+|.+.++.+- +-+|+
T Consensus 135 -----~~~l~~~~~~~~~~~~~~~L~~qf 158 (348)
T pfam09848 135 -----IEELKKIAAKWPAEIYELHLSSQF 158 (348)
T ss_pred -----HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf -----999999998689704798655010
No 264
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.38 E-value=0.035 Score=36.04 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC------CCCHHHHH
Q ss_conf 101377655641677267762131002769999999999851011123333321247975899958------52179998
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL------EMSSEQLA 278 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl------EMs~~el~ 278 (504)
-|..||++---+.+|+.+.|-|+.|.||||+.- +............ ...|. +.+++. .|+..|.
T Consensus 36 ~f~AL~dVsf~i~~GEivgllG~NGaGKSTLlk-~I~Gl~~P~~G~I-------~~~G~-i~~~~~~~~l~~~lt~~en- 105 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSN-IIGGSLSPTVGKV-------DRNGE-VSVIAISAGLSGQLTGIEN- 105 (264)
T ss_pred EEEEECCCEEEECCCCEEEEECCCCCHHHHHHH-HHHCCCCCCCCEE-------EECCE-EEEEEECCCCCCCCEEEHH-
T ss_conf 899952707888599899999899861999999-9967988887479-------99988-7488503565744300015-
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHCCEEEEC-CCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHH
Q ss_conf 789999874101100012137688998-99999998627807825-8998899999--9886402244474677671353
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEK-IVACSQVMQKLPLYIDQ-TGGISMSQLA--TRARRLKRQRGLDLLIVDYIQL 354 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~-i~~a~~~l~~~~l~I~d-~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLql 354 (504)
+.+..+..| ++..+... +.+..+. .++.-+++. ...+|-.+-+ +.++.+. +++++++.|-
T Consensus 106 ---------i~~~~~~~g-~~~~~~~~~~~~~le~-~~l~~~~~~~~~~LSgGqkqrl~lA~al~--~~P~iLiLDE--- 169 (264)
T PRK13546 106 ---------IEFKMLCMG-FKRKEIKAMTPKIIEF-SELGEFIYQPVKKYSSGMRAKLGFSINIT--VNPDILVIDE--- 169 (264)
T ss_pred ---------HHHHHHHCC-CCHHHHHHHHHHHHHH-HCCHHHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEC---
T ss_conf ---------888998724-2499999999999985-12055651755347999999999999995--6999999959---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 25664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 355 MTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 355 i~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
+.. ..+. .....+...++.+. +-+..||..|.- -..+++-||-|++|+.
T Consensus 170 --Pts-~LD~--~~~~~i~~~i~~l~-~~g~TiilvSH~-------------------l~~v~~lcDri~vl~~ 218 (264)
T PRK13546 170 --ALS-VGDQ--TFAQKCLDKIYEFK-EQNKTIFFVSHN-------------------LGQVRQFCTKIAWIEG 218 (264)
T ss_pred --CCC-CCCH--HHHHHHHHHHHHHH-HCCCEEEEECCC-------------------HHHHHHHCCEEEEEEC
T ss_conf --875-4899--99999999999999-689899998487-------------------8999986999999989
No 265
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.38 E-value=0.063 Score=34.14 Aligned_cols=173 Identities=19% Similarity=0.262 Sum_probs=84.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHH
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958---5217999878999
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIIS 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is 283 (504)
+.|+.+.--+.+|+.+.|-|++|.|||+|+--+. ..-.. +...|.+-.. +++..++.. .++
T Consensus 18 ~~L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~i~g~~~~~~~~~~~r~-~i~ 81 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA-GLYKP--------------TSGSVLLDGTDIRQLDPADLRR-NIG 81 (220)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEEHHHHCHHHHHH-CEE
T ss_conf 5153459998799999999999985999999996-72547--------------8658999999957725999973-269
Q ss_pred HHHHHC-------CCCCCCC--CCCHHHHHHHHH---HHHHHHHCCE----EEEC-CCCCCHHH--HHHHHHHHCCCCCC
Q ss_conf 987410-------1100012--137688998999---9999862780----7825-89988999--99988640224447
Q gi|254780332|r 284 EQTEVP-------SSKIRRG--ELTRPDYEKIVA---CSQVMQKLPL----YIDQ-TGGISMSQ--LATRARRLKRQRGL 344 (504)
Q Consensus 284 ~~s~I~-------~~~i~~g--~l~~~e~~~i~~---a~~~l~~~~l----~I~d-~~~~ti~~--I~~~~r~~~~~~gi 344 (504)
...+-| ...|.-| ..++++..+..+ ..+.+...|- .+.+ ...+|-.+ -.+.+|.+.+ +.
T Consensus 82 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~i~~~~~~~~l~~~i~~~~~g~~t~i~~~g~~LSgGqkQri~lARal~~--~~ 159 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DP 159 (220)
T ss_pred EECCCCEEECCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHC--CC
T ss_conf 9916896766759998535797789799999999959789997375543453589997218999999999999955--99
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .+.+.- +.. --..|.+.|+.+.+ +..||..++ |+. .-..||-|+
T Consensus 160 ~ililD-----Epts~L-D~~--~~~~i~~~l~~~~~--~~Tvi~itH-----------~~~---------~~~~~D~Ii 209 (220)
T cd03245 160 PILLLD-----EPTSAM-DMN--SEERLKERLRQLLG--DKTLIIITH-----------RPS---------LLDLVDRII 209 (220)
T ss_pred CEEEEE-----CCCCCC-CHH--HHHHHHHHHHHHCC--CCEEEEEEC-----------CHH---------HHHHCCEEE
T ss_conf 999996-----875688-989--99999999998769--998999935-----------988---------998499999
Q ss_pred EEE
Q ss_conf 972
Q gi|254780332|r 425 FVI 427 (504)
Q Consensus 425 ~l~ 427 (504)
.|.
T Consensus 210 vl~ 212 (220)
T cd03245 210 VMD 212 (220)
T ss_pred EEE
T ss_conf 998
No 266
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.0042 Score=43.12 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--HHHHH--HH
Q ss_conf 101377655641677267762131002769999999999851011123333321247975899958521--79998--78
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS--SEQLA--TR 280 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs--~~el~--~R 280 (504)
|...|+.+---+.+|+.+.|.|..|.||||++..++-- -. .....|.+.-.++. ...+. .|
T Consensus 14 ~~~al~~vsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gl-l~--------------P~~G~I~v~G~~i~~~~~~~~~~r~ 78 (275)
T PRK13639 14 GTVALKGINFKAEEGEMIAILGPNGAGKSTLFLHFNGI-LK--------------PSSGSVLIKGEPIKYDKKSLLNVRK 78 (275)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CC--------------CCCEEEEECCEECCCCCHHHHHHHH
T ss_conf 98999864889989989999999996499999999739-89--------------9963999999999888065999987
Q ss_pred HHHHHH--------------HHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEE-EECC-C-CCCHHHH--HHHHHHHCC
Q ss_conf 999987--------------4101100012137688-99899999998627807-8258-9-9889999--998864022
Q gi|254780332|r 281 IISEQT--------------EVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLY-IDQT-G-GISMSQL--ATRARRLKR 340 (504)
Q Consensus 281 ~is~~s--------------~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~-I~d~-~-~~ti~~I--~~~~r~~~~ 340 (504)
-++..- .|.+.....| ++.++ .+++.++.+.+ .|. +.+. | .+|=.+- .+.++.+.
T Consensus 79 ~vg~vfQ~p~~ql~~~tV~e~i~fg~~~~g-~~~~e~~~rv~~~l~~~---gL~~~~~~~p~~LSGGqkqRVaiA~aLa- 153 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPMNLG-LSKEEVEKRVKDALKAV---GMEGFERKPPHHLSGGQKKRVAIAGILA- 153 (275)
T ss_pred HCEEEECCCHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHH-
T ss_conf 415993383576562719999999999859-99999999999999877---9945665794449999999999988873-
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 44474677671353256644321137889999999999998827919997713822016899998401014324223313
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdA 420 (504)
..+++++.| .+.. .-+. ....+|.+-|+.+.++ +..||..++ | -..+++-|
T Consensus 154 -~~P~iliLD-----EPTa-gLDp--~~~~~i~~ll~~l~~~-G~Tii~iTH----------------d---m~~~~~~a 204 (275)
T PRK13639 154 -MNPEIMVLD-----EPTS-GLDP--MGASQIMKLLYDLNKE-GITIIISTH----------------D---VDLVPIYA 204 (275)
T ss_pred -CCCCEEEEC-----CCCC-CCCH--HHHHHHHHHHHHHHHC-CCEEEEECC----------------C---HHHHHHHC
T ss_conf -699899977-----9755-4899--9999999999999976-999999938----------------9---99999969
Q ss_pred CEEEEEEC
Q ss_conf 87889725
Q gi|254780332|r 421 DVVLFVIR 428 (504)
Q Consensus 421 D~v~~l~R 428 (504)
|-|+.|+.
T Consensus 205 drv~vl~~ 212 (275)
T PRK13639 205 NKIYVLND 212 (275)
T ss_pred CEEEEEEC
T ss_conf 99999989
No 267
>PRK06921 hypothetical protein; Provisional
Probab=96.37 E-value=0.11 Score=32.26 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=30.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 77621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
..+.|.||.|||-|+..+|...... .|.+|+|++ ..++...
T Consensus 119 l~f~G~~G~GKThLa~aIa~~Ll~~--------------~~~~Vly~~----~~~~~~~ 159 (265)
T PRK06921 119 IALLGQPGSGKTHLLTAAANELMRK--------------KGVPVLYFP----FVEGFGD 159 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--------------CCCEEEEEE----HHHHHHH
T ss_conf 7997289898899999999999996--------------297199988----7999999
No 268
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.37 E-value=0.11 Score=32.25 Aligned_cols=177 Identities=20% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHH
Q ss_conf 101377655641677267762131002769999999999851011123333321247975899958---52179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~ 281 (504)
|.+.||.+.--+++|+.+.|.|.-|.|||++.--+ ...... ....|.|.-- .++..+++.+-
T Consensus 14 ~~~al~~vsl~v~~Gei~~liGpNGaGKSTLl~~i-~Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~~~g 78 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVI-TGKTRP--------------DEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCC--------------CCEEEEECCEECCCCCHHHHHHCC
T ss_conf 98987450789889989999989997599999999-679578--------------855999999988899999999748
Q ss_pred HHHHH---------------------HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHH--HHHHHH
Q ss_conf 99987---------------------4101100012137688998999999986278078258-99889999--998864
Q gi|254780332|r 282 ISEQT---------------------EVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQL--ATRARR 337 (504)
Q Consensus 282 is~~s---------------------~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I--~~~~r~ 337 (504)
++..- +-.......+....+..+++.++.+.+.=.+. .+.. ..+|-.+- .+.+|.
T Consensus 79 Ig~~~Q~~~l~~~ltv~enl~~~~~~~~~~~~~l~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSgGqkqrv~iA~a 157 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-ADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred CCEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-HCCCHHHCCHHHHHHHHHHHH
T ss_conf 8545266676766979999999875155502443036649999999999987799726-558634599789999999999
Q ss_pred HCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 02244474677671353256644321137889999999999998827919997713822016899998401014324223
Q gi|254780332|r 338 LKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIE 417 (504)
Q Consensus 338 ~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE 417 (504)
+. .++++++.| .+... -+ .....+|..-++.++++. .|++.++ |+ ..++
T Consensus 158 L~--~~P~lllLD-----EPt~g-LD--~~~~~~i~~ll~~l~~~~--tvi~isH----------------dl---~~~~ 206 (242)
T TIGR03411 158 LM--QDPKLLLLD-----EPVAG-MT--DEETEKTAELLKSLAGKH--SVVVVEH----------------DM---EFVR 206 (242)
T ss_pred HH--HCCCEEEEE-----CCCCC-CC--HHHHHHHHHHHHHHHCCC--EEEEEEC----------------CH---HHHH
T ss_conf 97--389989991-----86436-99--899999999999985799--7999978----------------59---9999
Q ss_pred HHCCEEEEEEC
Q ss_conf 31387889725
Q gi|254780332|r 418 QDADVVLFVIR 428 (504)
Q Consensus 418 qdAD~v~~l~R 428 (504)
+-||-|+.|++
T Consensus 207 ~~~drv~vl~~ 217 (242)
T TIGR03411 207 SIADKVTVLHQ 217 (242)
T ss_pred HHCCEEEEEEC
T ss_conf 97999999979
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.34 E-value=0.11 Score=32.38 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=18.8
Q ss_pred HHHHHHHCCH-----HHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999944296-----6637988899999999999839
Q gi|254780332|r 44 FYRVSDFLKP-----LHFFEAIHQKIFEIMGKLVHMG 75 (504)
Q Consensus 44 ~~~v~~~L~p-----edFy~~~hr~IF~ai~~L~~~g 75 (504)
+.++.++-.| +||.--.|-.|++++.-|.+..
T Consensus 121 ~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~ 157 (894)
T COG2909 121 LNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA 157 (894)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9998751496499953532257602899999999719
No 270
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.34 E-value=0.02 Score=37.85 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
++.+-+|-|+.|.|||+ +|.-|.-+.. .+|+.|.=-+| .-.+..-+...+||....|.+-
T Consensus 396 ~~~Ia~VvG~AGaGKSt-mL~aAReawE--------------a~GyrV~GaAL----sGkAAegLe~~sGI~SrTlAs~- 455 (1102)
T PRK13826 396 AERIAAVIGRAGAGKTT-MMKAAREAWE--------------AAGYRVVGGAL----AGKAAEGLEKEAGIASRTLSSW- 455 (1102)
T ss_pred CCCEEEEEECCCCCHHH-HHHHHHHHHH--------------HCCCEEEEECC----CHHHHHHHHHCCCCCCHHHHHH-
T ss_conf 88668998428887889-9999999999--------------77977980150----0789997753469530338999-
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE-CCHHHCC
Q ss_conf 3768899899999998627807825899889999998864022444746776-7135325
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIV-DYIQLMT 356 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvI-DYLqli~ 356 (504)
.-+.......+...-++|.|..++-=..-.+.+-+...+.|-++|.| |.-||=.
T Consensus 456 -----e~~w~~gr~~L~~~dVlVIDEAGMVgsrqmarvl~~ae~aGAKvVLVGD~~QLQp 510 (1102)
T PRK13826 456 -----ELRWNQGRDQLDNKTVFVLDEAGMVSSRQMALFVEAVTRAGAKLVLVGDPEQLQP 510 (1102)
T ss_pred -----HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCC
T ss_conf -----9874358655678738998455565579999999999975998999688788276
No 271
>PRK13544 consensus
Probab=96.32 E-value=0.046 Score=35.16 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
|+++---+++|+.+.+-|+-|.|||+|.--++
T Consensus 17 l~~vs~~i~~Gei~~l~G~NGsGKSTLl~~i~ 48 (208)
T PRK13544 17 FSNLSFTAKQNSLTLVIGNNGSGKTSLLRLLA 48 (208)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 94415898299499999999998999999995
No 272
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.32 E-value=0.12 Score=32.05 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=25.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
-|+.+.--+.||+.+.|.|+.|.|||+|+--++
T Consensus 16 vL~~isl~i~~Gei~~iiG~nGaGKSTLl~~i~ 48 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 996518898499799999999999999999983
No 273
>KOG0061 consensus
Probab=96.31 E-value=0.037 Score=35.89 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=76.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
-|+.+.|=++||++..|-|..|.|||++.--+|-..... ..-...|++=. +........++.+...+
T Consensus 45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~------------~~~~G~ilvNG-~~~~~~~~~~~s~yV~Q 111 (613)
T KOG0061 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG------------LKLSGEILLNG-RPRDSRSFRKISGYVQQ 111 (613)
T ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC------------CCCCEEEEECC-CCCCHHHHHHCCEEECC
T ss_conf 321877998678689997688877999999995778878------------87615999898-22764552000347813
Q ss_pred HCC--------------CCCCCC-CCCHHHH-HHHHHHHHHHHHCC---EEEE--CCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 101--------------100012-1376889-98999999986278---0782--5899889999998864022444746
Q gi|254780332|r 288 VPS--------------SKIRRG-ELTRPDY-EKIVACSQVMQKLP---LYID--QTGGISMSQLATRARRLKRQRGLDL 346 (504)
Q Consensus 288 I~~--------------~~i~~g-~l~~~e~-~~i~~a~~~l~~~~---l~I~--d~~~~ti~~I~~~~r~~~~~~gi~~ 346 (504)
-+. .+++-+ .++.++. +++.+.+.++.-.. =.|- +..+++-.|-+.-.-...--+.+.+
T Consensus 112 dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i 191 (613)
T KOG0061 112 DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI 191 (613)
T ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 34556654430234456899518877889999999999997275243140236777676460125566678888439817
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 776713532566443211378899999999999988279199-9771
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPII-ALSQ 392 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi-~lsQ 392 (504)
+|.| ++. ..-++ ..+ -.+.+-||.+|++ |.-|| ...|
T Consensus 192 LflD-----EPT-SGLDS-~sA-~~vv~~Lk~lA~~-grtVi~tIHQ 229 (613)
T KOG0061 192 LFLD-----EPT-SGLDS-FSA-LQVVQLLKRLARS-GRTVICTIHQ 229 (613)
T ss_pred EEEE-----CCC-CCCCH-HHH-HHHHHHHHHHHHC-CCEEEEEEEC
T ss_conf 9970-----898-88555-768-9999999999867-9989999768
No 274
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.31 E-value=0.048 Score=35.01 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
-|+.+.--+.+|+++.|-|+.|.|||+|.--++
T Consensus 17 il~~vsf~i~~Gei~~l~G~NGaGKTTLlk~i~ 49 (206)
T PRK13539 17 VFSGLSFTLAAGEALVLTGPNGSGKTTLLRLLA 49 (206)
T ss_pred EECCCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 981507898699499998999998999999995
No 275
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.02 Score=37.96 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=77.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
..|+++---+.+|+.+.|-|.+|+|||++.--++ ..-.. ....|.|..-+.+...-..+..- -
T Consensus 14 ~~l~~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~-Gl~~p--------------~~G~I~~~g~~i~~~~~~~~~~r--r 76 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA-GLEEP--------------DSGSILIDGEDLTDLEDELPPLR--R 76 (178)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCCHHHHHC--C
T ss_conf 9983707698899899999999983999999998-59999--------------96399999999988861024541--7
Q ss_pred HHCCCCCCCCCCCHH--HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCH
Q ss_conf 410110001213768--899899999998627807825899889999998864022444746776713532566443211
Q gi|254780332|r 287 EVPSSKIRRGELTRP--DYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEEN 364 (504)
Q Consensus 287 ~I~~~~i~~g~l~~~--e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~ 364 (504)
+|- .-+++..|-+. -++++.- || ++ --.+=.+.+|.+. ..+++++.| .|.+.- +
T Consensus 77 ~ig-~vFQ~~~L~p~~tv~eNv~~--------~L-----SG-Gq~QRvaIARAL~--~~P~ill~D-----EPts~L-D- 132 (178)
T cd03229 77 RIG-MVFQDFALFPHLTVLENIAL--------GL-----SG-GQQQRVALARALA--MDPDVLLLD-----EPTSAL-D- 132 (178)
T ss_pred CEE-EEECCCCCCCCCCHHHHHCE--------EC-----CC-HHHHHHHHHHHHH--CCCCEEEEE-----CCCCCC-C-
T ss_conf 759-99269988998928996008--------17-----72-6889999999985--299999970-----897647-9-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 365 RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 365 r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
..--.+|...+|.+.++++++++..+. | -..+..-||-|++++
T Consensus 133 -~~~~~~i~~~l~~l~~~~~~t~i~vTH----------------d---~~~a~~~aDri~vm~ 175 (178)
T cd03229 133 -PITRREVRALLKSLQAQLGITVVLVTH----------------D---LDEAARLADRVVVLR 175 (178)
T ss_pred -HHHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEE
T ss_conf -999999999999999964999999989----------------9---999998699999992
No 276
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.29 E-value=0.029 Score=36.69 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=83.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585---2179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~is~ 284 (504)
.|+.+.-=+.+|+.+.|-|++|.|||+|+--+. ..-.. +...|.+--.+ ++.+.+. +.++.
T Consensus 17 ~L~~is~~i~~G~~vaivG~sGsGKSTll~ll~-gl~~p--------------~~G~I~i~g~di~~~~~~~~r-~~i~~ 80 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQ-RFYVP--------------ENGRVLVDGHDLALADPAWLR-RQVGV 80 (237)
T ss_pred CEECCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCCHHHHH-HHCEE
T ss_conf 251508998799999999999985999999996-77657--------------987899999995518999998-60189
Q ss_pred HHHHC-------CCCCCCC--CCCHHHHHHHHHH---HHHHHHCC----EEEECC-CCCCHHHH--HHHHHHHCCCCCCC
Q ss_conf 87410-------1100012--1376889989999---99986278----078258-99889999--99886402244474
Q gi|254780332|r 285 QTEVP-------SSKIRRG--ELTRPDYEKIVAC---SQVMQKLP----LYIDQT-GGISMSQL--ATRARRLKRQRGLD 345 (504)
Q Consensus 285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a---~~~l~~~~----l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~ 345 (504)
..+=+ ...|.-| ..+.++.....+. .+.+.++| -.|.+. ..+|-.+- .+.+|.+.+ ..+
T Consensus 81 v~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~~~l~~~i~~l~~g~~t~i~~~g~~LSgGqkQRlalARall~--~~~ 158 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPR 158 (237)
T ss_pred EECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 958771557828988723899999999999999968544466366666205579788489999999999999966--999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
++++| .+.+.- +...+ ..|...|+.+.+ +..||+.++ | | ..+ +.||-|+.
T Consensus 159 illlD-----Epts~L-D~~te--~~i~~~l~~~~~--~~Tvi~itH-------r---------l---~~l-~~aD~Iiv 208 (237)
T cd03252 159 ILIFD-----EATSAL-DYESE--HAIMRNMHDICA--GRTVIIIAH-------R---------L---STV-KNADRIIV 208 (237)
T ss_pred EEEEE-----CCCCCC-CHHHH--HHHHHHHHHHHC--CCEEEEEEC-------C---------H---HHH-HHCCEEEE
T ss_conf 99994-----864568-98999--999999999829--999999807-------8---------8---899-84999999
Q ss_pred EE
Q ss_conf 72
Q gi|254780332|r 426 VI 427 (504)
Q Consensus 426 l~ 427 (504)
|.
T Consensus 209 l~ 210 (237)
T cd03252 209 ME 210 (237)
T ss_pred EE
T ss_conf 98
No 277
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.12 Score=31.91 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=7.8
Q ss_pred HCCHHHCC----CHHHHHH
Q ss_conf 42966637----9888999
Q gi|254780332|r 50 FLKPLHFF----EAIHQKI 64 (504)
Q Consensus 50 ~L~pedFy----~~~hr~I 64 (504)
.+++++|. ++.||.+
T Consensus 126 rid~~dv~~lifDEAHRAv 144 (542)
T COG1111 126 RIDLDDVSLLIFDEAHRAV 144 (542)
T ss_pred CCCHHHCEEEEECHHHHCC
T ss_conf 6676780589862355413
No 278
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.26 E-value=0.07 Score=33.78 Aligned_cols=172 Identities=20% Similarity=0.303 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
.|+++.--+.+|+.+.|.|++|.|||+|+--++ ..-.. +...|.+-.. +.+.+++ .+.++.
T Consensus 18 vL~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~idg~~i~~~~~~~~-r~~i~~ 81 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDP--------------TSGEILLDGVDIRDLNLRWL-RSQIGL 81 (238)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-HCCCC--------------CCCEEEECCEECCCCCHHHH-HHCEEE
T ss_conf 222558997699999999999998999999982-38618--------------85189999999231899999-740699
Q ss_pred HHHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCC----EEEEC-CCCCCHHHH--HHHHHHHCCCCCCC
Q ss_conf 87410-------1100012--13768899899999---9986278----07825-899889999--99886402244474
Q gi|254780332|r 285 QTEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLP----LYIDQ-TGGISMSQL--ATRARRLKRQRGLD 345 (504)
Q Consensus 285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~----l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~ 345 (504)
..+=| ...|.-| ..++++.....+.. ..+.++| -.|.+ ...+|-.|- .+.+|.+.+ ..+
T Consensus 82 v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~a~~~~~l~~~i~~lp~gl~t~ige~G~~LSgGQ~QRialARAl~~--~~~ 159 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPK 159 (238)
T ss_pred ECCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf 915896727529999633687899999999999978524355186877225078678589999999999999965--999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
+++.| .+.+.- +...+ ..|...|+.+.+ +..||..++ | + | .+ ..||.|++
T Consensus 160 ililD-----E~tsaL-D~~te--~~i~~~l~~~~~--~~TvI~ItH-------r----l-------~-~l-~~~D~Iiv 209 (238)
T cd03249 160 ILLLD-----EATSAL-DAESE--KLVQEALDRAMK--GRTTIVIAH-------R----L-------S-TI-RNADLIAV 209 (238)
T ss_pred EEEEE-----CCCCCC-CHHHH--HHHHHHHHHHHC--CCEEEEECC-------C----H-------H-HH-HHCCEEEE
T ss_conf 99997-----876678-99999--999999999809--998999848-------8----8-------8-99-85999999
Q ss_pred EE
Q ss_conf 72
Q gi|254780332|r 426 VI 427 (504)
Q Consensus 426 l~ 427 (504)
|.
T Consensus 210 l~ 211 (238)
T cd03249 210 LQ 211 (238)
T ss_pred EE
T ss_conf 98
No 279
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.25 E-value=0.065 Score=34.03 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---1799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~i 282 (504)
+..|+.+---+++|+++-|.|..|.|||+|.--++ ..... ....|.|.--++ +..+...+=+
T Consensus 13 ~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~-Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~~~gi 77 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS-GFLRP--------------TSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCC
T ss_conf 99872338998899899999899973999999996-79878--------------8318999999668899999997597
Q ss_pred HHH---H----------HHCC---------CCCCCCCCCHH-HHHHHHHHHHHHHHCCEE--EECC-CCCCHHH--HHHH
Q ss_conf 998---7----------4101---------10001213768-899899999998627807--8258-9988999--9998
Q gi|254780332|r 283 SEQ---T----------EVPS---------SKIRRGELTRP-DYEKIVACSQVMQKLPLY--IDQT-GGISMSQ--LATR 334 (504)
Q Consensus 283 s~~---s----------~I~~---------~~i~~g~l~~~-e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~--I~~~ 334 (504)
+.. . ++.+ ........... ..+++.++.+.+ .|. .+.. ..+|-.+ -.+.
T Consensus 78 ~~v~Q~~~l~~~ltv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSGG~~Qrv~i 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV---GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHC---CCCCHHCCCHHHCCHHHHHHHHH
T ss_conf 676014102655438998988887604543001102358999999999999974---99804388626699999999999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86402244474677671353256644321137889999999999998827919997713822016899998401014324
Q gi|254780332|r 335 ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG 414 (504)
Q Consensus 335 ~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg 414 (504)
+|.+. .++++++.| .+... -+ .....+|.+-|+.++. -++.||..|+ || .
T Consensus 155 Aral~--~~P~lliLD-----EPT~g-LD--~~~~~~i~~~l~~l~~-~G~tii~vsH----------------dl---~ 204 (236)
T cd03219 155 ARALA--TDPKLLLLD-----EPAAG-LN--PEETEELAELIRELRE-RGITVLLVEH----------------DM---D 204 (236)
T ss_pred HHHHH--CCCCEEEEE-----CCCCC-CC--HHHHHHHHHHHHHHHH-CCCEEEEECC----------------CH---H
T ss_conf 99996--599999994-----87658-99--9999999999999996-5999999917----------------48---9
Q ss_pred HHHHHCCEEEEEEC
Q ss_conf 22331387889725
Q gi|254780332|r 415 SIEQDADVVLFVIR 428 (504)
Q Consensus 415 ~IEqdAD~v~~l~R 428 (504)
.+++-||-|+.+++
T Consensus 205 ~~~~~~Drv~vm~~ 218 (236)
T cd03219 205 VVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHCCEEEEEEC
T ss_conf 99996999999989
No 280
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.24 E-value=0.055 Score=34.58 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH-HHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995852179998-78999
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA-TRIIS 283 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~-~R~is 283 (504)
++..||.+.--+.+|+.+.+.|+-|.|||++.--++ ..-. .....|.+.-.++...... .|-++
T Consensus 17 ~~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~-Gl~~--------------p~~G~i~i~G~d~~~~~~~~r~~ig 81 (218)
T cd03266 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA-GLLE--------------PDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCC--------------CCCCEEEECCEECCCCHHHHHCCEE
T ss_conf 689872627898598299999999984999999997-7977--------------8974899999998869798962879
Q ss_pred HHHHHCCCCCCCCCCCHH----------------HHHHHHHHHHHHHHCCEEEECC-CCCCHHHH--HHHHHHHCCCCCC
Q ss_conf 987410110001213768----------------8998999999986278078258-99889999--9988640224447
Q gi|254780332|r 284 EQTEVPSSKIRRGELTRP----------------DYEKIVACSQVMQKLPLYIDQT-GGISMSQL--ATRARRLKRQRGL 344 (504)
Q Consensus 284 ~~s~I~~~~i~~g~l~~~----------------e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I--~~~~r~~~~~~gi 344 (504)
=+|-....-..++-. ..+++.+..+.+. ..=+.+.. ..+|-.+- .+.++.+. +++
T Consensus 82 ---~~~q~~~l~~~ltv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~kqrv~la~al~--~~P 155 (218)
T cd03266 82 ---FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-MEELLDRRVGGFSTGMRQKVAIARALV--HDP 155 (218)
T ss_pred ---EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHCCCHHHCCCHHHHHHHHHHHHH--CCC
T ss_conf ---98077667999989999999999849998999999999999749-955751443227826889999999986--699
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
++++.| .|... -+- .....+..-++.++ +-+..|+..|+. -..+|+-||-|+
T Consensus 156 ~lliLD-----EPt~g-LD~--~~~~~i~~~l~~l~-~~g~til~~sH~-------------------l~e~~~l~dri~ 207 (218)
T cd03266 156 PVLLLD-----EPTTG-LDV--MATRALREFIRQLR-ALGKCILFSTHI-------------------MQEVERLCDRVV 207 (218)
T ss_pred CEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHH-HCCCEEEEECCC-------------------HHHHHHHCCEEE
T ss_conf 899997-----98767-699--99999999999998-579999998987-------------------899999699999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
+++.
T Consensus 208 vl~~ 211 (218)
T cd03266 208 VLHR 211 (218)
T ss_pred EEEC
T ss_conf 9989
No 281
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.24 E-value=0.076 Score=33.51 Aligned_cols=174 Identities=18% Similarity=0.262 Sum_probs=89.4
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
|+++.-=++||+.+.|-|++|+||||++ ++....-...... ...+|.+.- +.+.+++ .+.++...+=
T Consensus 351 L~~isl~i~~Ge~vaiVG~SGsGKSTL~-~LL~gly~p~~G~-------I~idg~di~----~i~~~~l-R~~i~~V~Q~ 417 (585)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLHRVFDPQSGR-------IRIDGTDIR----TVTRASL-RRNIGVVFQE 417 (585)
T ss_pred CCCCEEEECCCCEEEEECCCCCCHHHHH-HHHHHHCCCCCCC-------EEECCEECH----HCCHHHH-HHHCCEECCC
T ss_conf 3670389759988999889898699999-9986015788796-------758989610----1689999-8525221667
Q ss_pred C-------CCCCCCC--CCCHHHHHHHHH---HHHHHHHCC----EEEECC-CCCCHHH--HHHHHHHHCCCCCCCEEEE
Q ss_conf 0-------1100012--137688998999---999986278----078258-9988999--9998864022444746776
Q gi|254780332|r 289 P-------SSKIRRG--ELTRPDYEKIVA---CSQVMQKLP----LYIDQT-GGISMSQ--LATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 289 ~-------~~~i~~g--~l~~~e~~~i~~---a~~~l~~~~----l~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvI 349 (504)
| ..+|+-| ..++++..+..+ +.+.+..+| -.|-+. .++|=.| -.+.+|.+. +++++++.
T Consensus 418 ~~LF~gTI~eNI~~g~~~~sd~ei~~a~~~a~~~~~I~~lp~G~dT~vge~G~~LSGGQrQRialARAll--~~p~IliL 495 (585)
T PRK13657 418 AGLFNRSIEDNLRVGRPDATDEEMRAAAERAQALDFIERKEDGYDTVVGERGRQLSGGERQRLAIARALL--KDPPILIL 495 (585)
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 6354765998875279999868899999984327999717566668013788868999999999999994--69898998
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
| .+.+.- +...+ ..|-+.|+.+.+ +..+|+.|+ || |- =++||.|+.|.
T Consensus 496 D-----EaTSaL-D~~tE--~~i~~~l~~~~~--~~T~iiIaH-----------Rl--st-------i~~aD~Iivl~ 543 (585)
T PRK13657 496 D-----EATSAL-DAETE--AKVKAALDEVMK--GRTTFIIAH-----------RL--ST-------VRNADRILVFD 543 (585)
T ss_pred E-----CCCCCC-CHHHH--HHHHHHHHHHHC--CCEEEEEEC-----------CH--HH-------HHHCCEEEEEE
T ss_conf 6-----887689-99999--999999999848--998999606-----------88--88-------99699999998
No 282
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.24 E-value=0.092 Score=32.88 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=12.2
Q ss_pred CEEEECCC-CCCHHHHHHHHHHHCC-CCCCCEEEEC
Q ss_conf 80782589-9889999998864022-4447467767
Q gi|254780332|r 317 PLYIDQTG-GISMSQLATRARRLKR-QRGLDLLIVD 350 (504)
Q Consensus 317 ~l~I~d~~-~~ti~~I~~~~r~~~~-~~gi~~vvID 350 (504)
++.+.-.| .+++.+-.....++.. ...++.|++-
T Consensus 209 ~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~vi~n 244 (322)
T COG0003 209 SFRLVSIPEKLSLYETKRAVERLSLYGIPVDAVIVN 244 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCHHEEEEE
T ss_conf 379996610115588999999998759864315563
No 283
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=96.22 E-value=0.0059 Score=41.98 Aligned_cols=151 Identities=20% Similarity=0.229 Sum_probs=85.3
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE-CCC-----CHHHHHHHHH
Q ss_conf 7765564167726776213100276999999999985101112333332124797589995-852-----1799987899
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS-LEM-----SSEQLATRII 282 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS-lEM-----s~~el~~R~i 282 (504)
||++.|=.+||+|+-+-|-+|-|||||.=-+|.. .++++++ =+| +.++-..|.+
T Consensus 843 L~~V~GwvkPG~lTALMG~SGAGKTTLLn~La~R--------------------~t~GvIT~G~~lVNG~~lD~sF~R~i 902 (1466)
T TIGR00956 843 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER--------------------VTTGVITDGDRLVNGRPLDSSFQRSI 902 (1466)
T ss_pred CCCCCEEEECCEEEECCCCCCCCHHHHHHHHHCC--------------------CCCCEEECCEEEECCCCCCCCCCCCC
T ss_conf 1575327877857651578876357888644330--------------------43217705715508845575557441
Q ss_pred HHHHH----HC----------CCCCCCC-CCCHHHHHHHHHHHHHHHHCCEEEE-----CCC-CCCHHHHH--HHHHHHC
Q ss_conf 99874----10----------1100012-1376889989999999862780782-----589-98899999--9886402
Q gi|254780332|r 283 SEQTE----VP----------SSKIRRG-ELTRPDYEKIVACSQVMQKLPLYID-----QTG-GISMSQLA--TRARRLK 339 (504)
Q Consensus 283 s~~s~----I~----------~~~i~~g-~l~~~e~~~i~~a~~~l~~~~l~I~-----d~~-~~ti~~I~--~~~r~~~ 339 (504)
...-+ ++ .-.||++ ..+..|+..+.+.+-+|=++.=|-| -.. +|+++|=+ ++.-.++
T Consensus 903 GYvQQQD~Hl~~~TVREaL~FSA~LRqP~~vs~~EK~~YVe~vI~lLEMe~YaDAvVG~pG~tGLNVEQRKRLTIGVELv 982 (1466)
T TIGR00956 903 GYVQQQDLHLETSTVREALRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGETGLNVEQRKRLTIGVELV 982 (1466)
T ss_pred CCEEECCEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 32454221224202889999999845985678653246888887664101022113515677888732321010334322
Q ss_pred CCCCCC-EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 244474-677671353256644321137889999999999998827919997
Q gi|254780332|r 340 RQRGLD-LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIAL 390 (504)
Q Consensus 340 ~~~gi~-~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~l 390 (504)
. +++ |||.| .|.+ .-++ |.--.|.+-+|.||. .|=.|+|.
T Consensus 983 A--kPkLL~FLD-----EPTS-GLDS--QtAWsi~~l~RKLad-~GQaILCT 1023 (1466)
T TIGR00956 983 A--KPKLLLFLD-----EPTS-GLDS--QTAWSICKLLRKLAD-HGQAILCT 1023 (1466)
T ss_pred H--CCCHHEECC-----CCCC-CHHH--HHHHHHHHHHHHHHH-CCCEEEEC
T ss_conf 1--632000215-----8897-0558--999999999998875-59838860
No 284
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.074 Score=33.62 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH-HHHHHHH
Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585217999-8789999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL-ATRIISE 284 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el-~~R~is~ 284 (504)
...||++.--..+|+.+.+-|+-|.|||++.-.++ ..... ....|.++..+.....- ..+-++.
T Consensus 13 ~~al~~is~~v~~Gei~gllGpNGAGKSTll~~i~-Gl~~p--------------~~G~i~i~G~~~~~~~~~~r~~ig~ 77 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT-TLLKP--------------TSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCHHHHHHCCEE
T ss_conf 99985826798898399999999871999999997-69788--------------9628999999988398999828389
Q ss_pred HHHHCCCCCCCCCCCHH---------------H-HHHHHHHHHHHHHCCEE-EECC--CCCCHHHHH--HHHHHHCCCCC
Q ss_conf 87410110001213768---------------8-99899999998627807-8258--998899999--98864022444
Q gi|254780332|r 285 QTEVPSSKIRRGELTRP---------------D-YEKIVACSQVMQKLPLY-IDQT--GGISMSQLA--TRARRLKRQRG 343 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~---------------e-~~~i~~a~~~l~~~~l~-I~d~--~~~ti~~I~--~~~r~~~~~~g 343 (504)
+|-.......|+-. + .+++.+..+.+ .|. .-+. ..+|-.+-+ +.++.+ -++
T Consensus 78 ---~pq~~~l~~~lTv~e~l~~~~~l~g~~~~~~~~~~~~ll~~~---~L~~~~~~~~~~LS~G~kqrv~ia~Al--~~~ 149 (220)
T cd03265 78 ---VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV---GLLEAADRLVKTYSGGMRRRLEIARSL--VHR 149 (220)
T ss_pred ---EECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHCCHHHHCCHHHHHHHHHHHHH--HCC
T ss_conf ---907876798899999999999981999999999999999977---996797370434799999999999998--569
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
+++++.| .|... -+ ......+.+-++.++++.+..|+..|+.= ..+|.-||-|
T Consensus 150 P~lliLD-----EPt~g-LD--p~~~~~i~~~i~~l~~~~g~tiilssH~l-------------------~eve~l~dri 202 (220)
T cd03265 150 PEVLFLD-----EPTIG-LD--PQTRAHVWEYIEKLKEEFGMTILLTTHYM-------------------EEAEQLCDRV 202 (220)
T ss_pred CCEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHHHHCCCEEEEECCCH-------------------HHHHHHCCEE
T ss_conf 9989980-----88668-89--99999999999999983897999988888-------------------9999869999
Q ss_pred EEEEC
Q ss_conf 89725
Q gi|254780332|r 424 LFVIR 428 (504)
Q Consensus 424 ~~l~R 428 (504)
++|+.
T Consensus 203 ~il~~ 207 (220)
T cd03265 203 AIIDH 207 (220)
T ss_pred EEEEC
T ss_conf 99979
No 285
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=96.20 E-value=0.011 Score=39.77 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=35.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
+.|-.+.||.|||+++.|+|...|.. -|++|+++-..|-.-.+..
T Consensus 38 i~VTS~~pgeGKTtva~nLA~~lA~~--------------~~~~VLLVDaDlr~p~l~~ 82 (207)
T TIGR03018 38 IMVTSSLPGEGKSFTAINLAISLAQE--------------YDKTVLLIDADLRRPSLHR 82 (207)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH--------------CCCEEEEEECCCCCCCCCH
T ss_conf 99978999998899999999999972--------------4985999953578997100
No 286
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=96.20 E-value=0.084 Score=33.17 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCCCCHHH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 43210137-76556416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTL-DKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~L-D~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
.+.|-+.| ++..|-++||+|+-|-|.+|-|||||+--+|..-... ...+|. |..+-=+--..+-+.+
T Consensus 40 ~~~p~K~lL~~vSG~a~~GeLlA~mGsSGAGKTTLmn~La~R~~~g-----------~~~~g~-~v~lNG~~~~~~~~~~ 107 (671)
T TIGR00955 40 ISVPRKHLLKNVSGVAKPGELLAIMGSSGAGKTTLMNALAFRSPKG-----------LKVSGS-VVLLNGRPIDAKEMRA 107 (671)
T ss_pred CCCCCHHHHHCCCEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCC-----------CEECCC-EEEECCEECCHHHHHH
T ss_conf 6565201110352021067068984787662689999985337478-----------614683-6787583758689985
Q ss_pred HHHHHHHHCC--------------CCCCCCC-CCH--HHHHHHHHHHHHHH--HC-CEEEE---CCCCCCHHHHHHHHHH
Q ss_conf 9999874101--------------1000121-376--88998999999986--27-80782---5899889999998864
Q gi|254780332|r 281 IISEQTEVPS--------------SKIRRGE-LTR--PDYEKIVACSQVMQ--KL-PLYID---QTGGISMSQLATRARR 337 (504)
Q Consensus 281 ~is~~s~I~~--------------~~i~~g~-l~~--~e~~~i~~a~~~l~--~~-~l~I~---d~~~~ti~~I~~~~r~ 337 (504)
+-|..-+-++ .++|=++ ++. +-.++|.+-..++. ++ +-.|= +..++|-.|=+..+
T Consensus 108 ~saYvqQ~Dlf~~~LTv~E~L~f~A~lRm~~~~~~~~~k~~rV~~vl~~l~L~~ca~T~IG~pg~~KGlSGGErKRLa-- 185 (671)
T TIGR00955 108 ISAYVQQDDLFIPTLTVREHLMFQAHLRMKRRVTKKHEKRERVDEVLQALGLRKCADTRIGIPGRVKGLSGGERKRLA-- 185 (671)
T ss_pred HHCHHEEHHHCCCCCCHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEECCCHHHHHH--
T ss_conf 401220110048851030000101223347667605799999999998604211211343799964552011367899--
Q ss_pred HCCC--CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 0224--44746776713532566443211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 338 LKRQ--RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 338 ~~~~--~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
+..+ +++.+.|.| +|.+ .- +..- ...+-+-||.||..=.+-|+.+.|= |..
T Consensus 186 fA~E~ltdP~~LFcD-----EPTS-GL-DSfm-A~~Vv~~L~~LA~~G~tiI~tIHQP-------------------Ss~ 238 (671)
T TIGR00955 186 FASELLTDPIILFCD-----EPTS-GL-DSFM-AYSVVQVLKGLAQKGKTIICTIHQP-------------------SSE 238 (671)
T ss_pred HHHHHHHCCCEEEEC-----CCCC-HH-HHHH-HHHHHHHHHHHHCCCCEEEEEEECC-------------------CHH
T ss_conf 887887189426503-----8895-34-5999-9999999999850897999983056-------------------188
Q ss_pred HHHHCCEEEEE
Q ss_conf 23313878897
Q gi|254780332|r 416 IEQDADVVLFV 426 (504)
Q Consensus 416 IEqdAD~v~~l 426 (504)
|-.--|.|+||
T Consensus 239 lF~lFd~i~ll 249 (671)
T TIGR00955 239 LFELFDKIILL 249 (671)
T ss_pred HHHHHCCEEEE
T ss_conf 98511716775
No 287
>KOG2680 consensus
Probab=96.20 E-value=0.0033 Score=43.90 Aligned_cols=60 Identities=32% Similarity=0.410 Sum_probs=40.2
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 6416772677621310027699999999998510111233333212479758999585217999878999
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is 283 (504)
.|--.|..+.|+|.||.|||++|+-++...-...+... =...-+|||||++.|-....+-
T Consensus 61 egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~----------i~gSEI~SlEmsKTEAltQAfR 120 (454)
T KOG2680 61 EGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTS----------ISGSEIYSLEMSKTEALTQAFR 120 (454)
T ss_pred CCCCCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEE----------EECCEEEEECCCHHHHHHHHHH
T ss_conf 28632138997248988844100002454078875036----------5022222100017799999988
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.18 E-value=0.05 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAY 241 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~ 241 (504)
.|+.+---+.+|+++.|-|+.|.|||+++--++-
T Consensus 17 ~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G 50 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 3325589986999999999998759999999986
No 289
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.071 Score=33.71 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=87.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH---HCCCCCCCCCCC---CCCCCCEEEEEECCCCHHHHHH-H
Q ss_conf 37765564167726776213100276999999999985---101112333332---1247975899958521799987-8
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVAD---AYKAELQTDGSY---KTINGGIVGFYSLEMSSEQLAT-R 280 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~---~~~~~~~~~~~~---~~~~g~~Vl~fSlEMs~~el~~-R 280 (504)
-|+++--=+.+|+.+-|-|..|+|||+++..++--... ............ ....++.+.++-.. +...+.. +
T Consensus 18 vL~~Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~i~~dg~~~~~~~~r~r~i~~v~Q~-p~~~~~p~~ 96 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLADGKPVAPCALRGRKIATIMQN-PRSAFNPLH 96 (254)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCEEEECCEECCHHHHCCCCEEEEEEC-CHHHCCHHH
T ss_conf 8866072898999999999998789999999957998898415789999999996034305508999837-522137688
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--EEEECCC-CCCHH--HHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 9999874101100012137688998999999986278--0782589-98899--99998864022444746776713532
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLP--LYIDQTG-GISMS--QLATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~--l~I~d~~-~~ti~--~I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
-+.. .+.......+. ....+++.++.+.+.=.+ =+.+..| .+|=. +-.+.+|.+. .++++++.|
T Consensus 97 ~v~~--~~~~~~~~~~~--~~~~~~~~~~l~~vgL~~~~~~l~~~P~qLSGGq~QRvaiArAL~--~~P~lLilD----- 165 (254)
T PRK10418 97 TMHT--HARETCLALGK--PADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL--CEAPFIIAD----- 165 (254)
T ss_pred HHHH--HHHHHHHHCCC--CHHHHHHHHHHHHCCCCCHHHHHHHCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----
T ss_conf 9999--99999986582--059999999999839998688764192634879999999999985--499989855-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 5664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 356 TTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.+.+. -+.. --.+|.+-||.|.++.++.+|..++ || +.+..-||-|+.++.
T Consensus 166 EPTs~-LD~~--~~~~il~ll~~l~~~~g~tii~vTH----------------Dl---~~a~~~aDri~Vm~~ 216 (254)
T PRK10418 166 EPTTD-LDVV--AQARILDLLESIVQKRALGMLLVTH----------------DM---GVVARLADDVAVMSH 216 (254)
T ss_pred CCCCC-CCHH--HHHHHHHHHHHHHHHHCCEEEEEEC----------------CH---HHHHHHCCEEEEEEC
T ss_conf 87543-7999--9999999999999970997999969----------------99---999996899999989
No 290
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.17 E-value=0.052 Score=34.77 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=91.1
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
|+++---++||+.+-|-|++|.||||++.-+.. .. .... .....|.+.- +++.+++ .+.++...+=
T Consensus 366 L~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g-~~-p~~G-------~I~i~g~di~----~i~~~~l-r~~i~~V~Q~ 431 (588)
T PRK11174 366 AGPLNFTLPAGQRVALVGPSGAGKTSLLNALLG-FL-PYQG-------SLKINGIELR----ELDPESW-RKHLSWVGQN 431 (588)
T ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH-HC-CCCC-------EEEECCEECC----CCCHHHH-HHHEEEECCC
T ss_conf 036469974997899989998649999999987-28-9883-------8999998603----0899999-9660351666
Q ss_pred C-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCC----EEEEC-CCCCCHHHH--HHHHHHHCCCCCCCEEEE
Q ss_conf 0-------1100012--13768899899999---9986278----07825-899889999--998864022444746776
Q gi|254780332|r 289 P-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLP----LYIDQ-TGGISMSQL--ATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 289 ~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~----l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~~vvI 349 (504)
+ ..+|+-| +.+++|.....+.. +.+.++| -.|-+ ..++|=.|- .+.+|.+. +++++++.
T Consensus 432 ~~LF~~TI~eNI~~g~~~atdeei~~A~~~a~~~~~I~~Lp~GldT~vge~G~~LSGGQrQRiaiARAll--~~~~ILIL 509 (588)
T PRK11174 432 PQLFHGTLRDNVLLANPDASDEQLQQALENAWVSEFVPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL--QPCQLLLL 509 (588)
T ss_pred CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 7777662998653358543345799999986247899845132236322888877999999999999983--79898999
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
| .+.+.- +...+ ..|-+.|+.+++ +-.+|..|+ | +|- =.+||.|+.|.
T Consensus 510 D-----EaTSaL-D~~tE--~~i~~~L~~~~~--~rTviiIaH-------R------lst-------i~~aD~Iivld 557 (588)
T PRK11174 510 D-----EPTASL-DAHSE--QLVMQALNAASQ--GQTTLMVTH-------Q------LED-------LAQMDQILVMQ 557 (588)
T ss_pred E-----CCCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEEEC-------C------HHH-------HHHCCEEEEEE
T ss_conf 8-----987798-99999--999999998679--998999806-------7------999-------98499999998
No 291
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.16 E-value=0.094 Score=32.82 Aligned_cols=167 Identities=20% Similarity=0.304 Sum_probs=86.0
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-----
Q ss_conf 167726776213100276999999999985101112333332124797589995852179998789999874101-----
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPS----- 290 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~----- 290 (504)
++||+.+.|.|++|.||||++--+. ..-....... ...|.++- +++.+++ .+.++...+=|.
T Consensus 338 I~~Ge~vaIVG~SGsGKSTLl~LL~-g~y~p~~G~I-------~idg~di~----~i~~~~l-R~~I~~V~Q~~~LF~~T 404 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVSEGDI-------RFHDIPLT----KLQLDSW-RSRLAVVSQTPFLFSDT 404 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH-HHHHCCCCCE-------EEECEECC----CCCHHHH-HHCCCCCCCCCCCCCCC
T ss_conf 8899789987999998799999999-7764267874-------65010134----2576888-63147658875025662
Q ss_pred --CCCCCC--CCCHHHHHHHHH---HHHHHHHCCE----EEECC-CCCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf --100012--137688998999---9999862780----78258-99889999--9988640224447467767135325
Q gi|254780332|r 291 --SKIRRG--ELTRPDYEKIVA---CSQVMQKLPL----YIDQT-GGISMSQL--ATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 291 --~~i~~g--~l~~~e~~~i~~---a~~~l~~~~l----~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
.+|.-| +.++++.....+ +.+.+.++|- .|.+. ..+|-.|- .+.+|.+.+ ++++++.| .
T Consensus 405 I~eNI~lg~~~~~~eei~~a~~~a~l~~~i~~lp~G~dT~ige~G~~LSGGQrQRialARAll~--~p~iliLD-----E 477 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHEDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILD-----D 477 (569)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEC-----C
T ss_conf 9999865797765458999999855568764375532371268889969999999999999954--99989980-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 66443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.+.- +...+ ..|.+.|+.+.+ +..+|..|+ | ||-+ .+||.|+.|.
T Consensus 478 aTSaL-D~~tE--~~i~~~l~~~~~--~~T~i~IaH-------R------lsti-------~~aD~I~vl~ 523 (569)
T PRK10789 478 ALSAV-DGRTE--HQILHNLRQWGE--GRTVIISAH-------R------LSAL-------TEASEIIVMQ 523 (569)
T ss_pred CCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEECC-------C------HHHH-------HHCCEEEEEE
T ss_conf 76668-99999--999999999749--998999715-------8------8889-------8599899998
No 292
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=96.16 E-value=0.089 Score=33.01 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=51.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217999878999987410-11000121
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVP-SSKIRRGE 297 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~-~~~i~~g~ 297 (504)
-.++++||.||.|||+++-.+.... ..|..|. +.. .++-. +.-.-.++- ........
T Consensus 12 Pkai~laG~pGAGKS~~~~~~~~~~----------------~~~~~v~-In~----D~~r~-~~P~y~~l~~~~~~~~~~ 69 (191)
T pfam06414 12 PVAVLLGGQPGAGKTELARALLEEL----------------GGGNVVR-IDP----DELRT-YHPDYDELQKADPKDASE 69 (191)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC----------------CCCCCEE-ECC----HHHHH-HHHHHHHHHHCCHHHHHH
T ss_conf 8799995799888899999998753----------------7899389-713----58788-777478655407677899
Q ss_pred CCHHHHHHHH-HHHHHH--HHCCEEEECCCCCCHHHHHHHHHHHCCC-CCCCEEEEC
Q ss_conf 3768899899-999998--6278078258998899999988640224-447467767
Q gi|254780332|r 298 LTRPDYEKIV-ACSQVM--QKLPLYIDQTGGISMSQLATRARRLKRQ-RGLDLLIVD 350 (504)
Q Consensus 298 l~~~e~~~i~-~a~~~l--~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~gi~~vvID 350 (504)
++..+-.++. ...... ...+|.|+-+. -+.+.+...+++++.. +.+.+++|-
T Consensus 70 ~~~~~a~~~~~~~~~~a~~~r~n~iiegT~-~~~~~~~~~~~~lk~~GY~v~v~~Va 125 (191)
T pfam06414 70 LTQPDASRWVEKLIDYAIERGYNIILEGTL-RSPDVARKLARKLKAAGYEVEVYVVA 125 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 989999999999999999759998985777-89799999999999789979999998
No 293
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.16 E-value=0.066 Score=33.97 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=75.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
-|+.+.--+.+|+.+.|-|+.|.|||+|+--++ ..... .. .....|..+ -.++..++..+ ++...+
T Consensus 19 vL~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~-gl~~~-~G-------~I~idg~~i----~~~~~~~~r~~-i~~vpQ 84 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNT-EG-------DIQIDGVSW----NSVPLQKWRKA-FGVIPQ 84 (275)
T ss_pred CEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-HHCCC-CC-------EEEECCEEC----CCCCHHHHHHH-EEEECC
T ss_conf 242507998799999999999997999999996-03578-95-------399998806----73689999763-899665
Q ss_pred HC-------CCCCC-CCCCCHHHHHHHHHHH---HHHHHCC----EEEECCC-CCCHH--HHHHHHHHHCCCCCCCEEEE
Q ss_conf 10-------11000-1213768899899999---9986278----0782589-98899--99998864022444746776
Q gi|254780332|r 288 VP-------SSKIR-RGELTRPDYEKIVACS---QVMQKLP----LYIDQTG-GISMS--QLATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 288 I~-------~~~i~-~g~l~~~e~~~i~~a~---~~l~~~~----l~I~d~~-~~ti~--~I~~~~r~~~~~~gi~~vvI 349 (504)
-+ ...|. .+..+++++.++.+.. ..+...| ..+.+.+ .+|-. +-.+.+|.+.+ +.++++.
T Consensus 85 ~~~lf~~Ti~eNl~~~~~~~~~~i~~~~~~~~l~~~i~~lp~~ld~~~~~~g~~LSgGqkQrl~lARaLl~--~p~IllL 162 (275)
T cd03289 85 KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLL 162 (275)
T ss_pred CCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 56326741999703212228899999999976699998573667403268887239999999999999951--9998999
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7135325664432113788999999999999882791999771
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
| .+... -+... ...|-+.|+.+.+ ++.||..++
T Consensus 163 D-----EpTs~-LD~~t--e~~i~~~l~~~~~--~~TvI~itH 195 (275)
T cd03289 163 D-----EPSAH-LDPIT--YQVIRKTLKQAFA--DCTVILSEH 195 (275)
T ss_pred E-----CCCCC-CCHHH--HHHHHHHHHHHCC--CCEEEEEEC
T ss_conf 7-----97668-99999--9999999999729--998999943
No 294
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.12 Score=32.12 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=70.0
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC----CHHH-H---H--
Q ss_conf 7765564167726776213100276999999999985101112333332124797589995852----1799-9---8--
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM----SSEQ-L---A-- 278 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM----s~~e-l---~-- 278 (504)
|+.+.--+++|+-+.|.|+-|+|||||+--++-.. .. ......+..+..+.||+-+- ..++ + .
T Consensus 328 l~~vsl~i~~GeriaIvG~NGsGKSTLlk~L~G~l-~p------~~G~i~~~~~v~igy~~Q~~~~~l~~~~t~l~~~~~ 400 (638)
T PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-AP------VSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLAR 400 (638)
T ss_pred CCCCCCEECCCCEEEEECCCCCCHHHHHHHHCCCC-CC------CCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 13775056378479997478713889999972887-88------885699844443341107677650611249999988
Q ss_pred -------HHHHHHHH--HHCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCHHHHHHHHHHHC
Q ss_conf -------78999987--410110001--21376889989999999862780782589--988999999886402
Q gi|254780332|r 279 -------TRIISEQT--EVPSSKIRR--GELTRPDYEKIVACSQVMQKLPLYIDQTG--GISMSQLATRARRLK 339 (504)
Q Consensus 279 -------~R~is~~s--~I~~~~i~~--g~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti~~I~~~~r~~~ 339 (504)
.++-.... +++...+.. +.|+..|..|+.-|.--+.+.++.|-|.| .+.+..+.+.-..+.
T Consensus 401 ~~~~~~~~~~r~~L~~f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~ 474 (638)
T PRK10636 401 LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474 (638)
T ss_pred HCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 57254699999999866889778639113399999999999999825998899858876688899999999998
No 295
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.084 Score=33.19 Aligned_cols=26 Identities=8% Similarity=0.294 Sum_probs=13.3
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 12479758999585217999878999
Q gi|254780332|r 258 KTINGGIVGFYSLEMSSEQLATRIIS 283 (504)
Q Consensus 258 ~~~~g~~Vl~fSlEMs~~el~~R~is 283 (504)
.+..|-.|.++-.-=+...-..|+++
T Consensus 334 ~i~~GeriaIvG~NGsGKSTLlk~L~ 359 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLA 359 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 56378479997478713889999972
No 296
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.11 E-value=0.1 Score=32.45 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=67.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCC--CCCC---CEEEEEEC----
Q ss_conf 137765564167726776213100276999999999985101112333-------3321--2479---75899958----
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD-------GSYK--TING---GIVGFYSL---- 270 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~-------~~~~--~~~g---~~Vl~fSl---- 270 (504)
+.+|.+---+++|+.+-|.|..|.|||+|+--++= ..+......... .... ...+ ..+.|...
T Consensus 298 ~al~~vs~~v~~GEi~gi~G~nGsGKsTL~k~l~G-l~~p~~G~V~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~l 376 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC
T ss_conf 46512068972896899987888878999999948-87898747999738744436675866778762551499466545
Q ss_pred --CCCHHHHHHHHHH--------------HH--HHHCCCCC-----CC-CCCCHHHHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf --5217999878999--------------98--74101100-----01-2137688998999999986278078258998
Q gi|254780332|r 271 --EMSSEQLATRIIS--------------EQ--TEVPSSKI-----RR-GELTRPDYEKIVACSQVMQKLPLYIDQTGGI 326 (504)
Q Consensus 271 --EMs~~el~~R~is--------------~~--s~I~~~~i-----~~-g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ 326 (504)
.|+-.+...+-+. .. .+.+.... +. ..|+-.+..++.-|..-..+-.++|.|.|..
T Consensus 377 ~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~r~p~~LSGGq~QRvaiAraL~~~P~vlilDEPT~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 76788999999998635766899999999999759976677776547921189999999999999997989899938601
Q ss_pred CHH-----HHHHHHHHHCCCCCCCEEEEC
Q ss_conf 899-----999988640224447467767
Q gi|254780332|r 327 SMS-----QLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 327 ti~-----~I~~~~r~~~~~~gi~~vvID 350 (504)
-++ +|...++++.++.|.-+|+|-
T Consensus 457 glD~~~~~~i~~~l~~~~~~~g~tvi~iS 485 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 13389999999999999983298999977
No 297
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.10 E-value=0.019 Score=38.02 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=80.0
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH---HCCCC
Q ss_conf 167726776213100276999999999985101112333332124797589995852179998789999874---10110
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE---VPSSK 292 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~---I~~~~ 292 (504)
++||+.+.|-|++|.||||++-=++. .-..... ....+|.++- +++..++-. .++...+ +=..-
T Consensus 346 i~~Ge~vaiVG~SGsGKSTL~~LL~r-~y~p~~G-------~I~idG~di~----~~~~~~lR~-~i~~V~Qd~~LF~~t 412 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTG-LYQPQSG-------EILLDGKPVT----AEQPEDYRK-LFSAVFTDVHLFDQL 412 (547)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCC-------EEEECCEECC----CCCHHHHHH-HCEEECCCCCHHHHH
T ss_conf 85998899989999977999999828-9669998-------6989999999----689999985-416985774045777
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CEEEECC----CCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf 001213768899899999998627-8078258----9988999--99988640224447467767135325664432113
Q gi|254780332|r 293 IRRGELTRPDYEKIVACSQVMQKL-PLYIDQT----GGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504)
Q Consensus 293 i~~g~l~~~e~~~i~~a~~~l~~~-~l~I~d~----~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504)
++. +....+-+....+.+.+... .+...+. ..+|-.| -.+.+|.+. +++++++.| .+.+. -+..
T Consensus 413 i~~-n~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~LSGGQrQRiaIARAll--~~p~ILILD-----EaTSa-LD~~ 483 (547)
T PRK10522 413 LGP-EGKPANPALVEKWLEQLKMAHKLELEDGRITNLKLSKGQKKRLALLLALA--EERDILLLD-----EWAAD-QDPH 483 (547)
T ss_pred HHH-CCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCCC-CCHH
T ss_conf 664-34231199999999985881310456688778962999999999999997--499999996-----85557-8999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 78899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+ ..|-+.+..+.++.+-.+|+.|+ | ||- =++||.|+.|.
T Consensus 484 te--~~i~~~l~~~~~~~grT~IvIaH-------R------Lst-------i~~aD~IiVl~ 523 (547)
T PRK10522 484 FR--REFYQVLLPLLQEMGKTIFAISH-------D------DHY-------FIHADRLLEMR 523 (547)
T ss_pred HH--HHHHHHHHHHHHHCCCEEEEEEC-------C------HHH-------HHHCCEEEEEE
T ss_conf 99--99999999998706989999824-------8------899-------98199899998
No 298
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=96.10 E-value=0.099 Score=32.63 Aligned_cols=141 Identities=21% Similarity=0.228 Sum_probs=66.8
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH-HHHHHHCCCCCC-------C
Q ss_conf 62131002769999999999851011123333321247975899958521799987899-998741011000-------1
Q gi|254780332|r 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRII-SEQTEVPSSKIR-------R 295 (504)
Q Consensus 224 iaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~i-s~~s~I~~~~i~-------~ 295 (504)
|.|.||.|||+|+-.+....-. .|.+|.++.|.=..+.+--... -..-=|+...++ +
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~---------------~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPN 65 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPL---------------RGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPN 65 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCC
T ss_conf 9898989889999999999997---------------7997599978986658999877717874679999998298973
Q ss_pred CCCC-HHH--HHHHHHHHHHHHH-CCEEEECCCCC-----CHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHH
Q ss_conf 2137-688--9989999999862-78078258998-----8999999886402244474677671353256644321137
Q gi|254780332|r 296 GELT-RPD--YEKIVACSQVMQK-LPLYIDQTGGI-----SMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRV 366 (504)
Q Consensus 296 g~l~-~~e--~~~i~~a~~~l~~-~~l~I~d~~~~-----ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~ 366 (504)
|.+. --| ..++.+..+++.. ...++.|+|+- .-+.++..++.+.+.+-+-+.++|- +.+..+
T Consensus 66 Gali~~me~l~~~~d~l~~~l~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~v~l~D~-~~~~d~-------- 136 (234)
T pfam03029 66 GALTVAMDFGRITLDWLLEELEYEDDYYLFDTPGQIELFTHWDSLARGVEALEASRLGAVYLVDT-RRLTDP-------- 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCEEEEEEECH-HHHCCH--------
T ss_conf 89999999999999999998525577699836983576540026999999971287389998425-774688--------
Q ss_pred HHHHHHHHHHHHHH--HHHCCCEEEE
Q ss_conf 88999999999999--8827919997
Q gi|254780332|r 367 LEITGITMALKALA--KELNIPIIAL 390 (504)
Q Consensus 367 ~~i~~is~~lK~lA--~e~~ipvi~l 390 (504)
...+|.-|-.++ -.+++|.|.+
T Consensus 137 --~~fis~~L~a~s~m~~l~lP~vnv 160 (234)
T pfam03029 137 --IDFFSGLLYALSIMLRLGLPFVVA 160 (234)
T ss_pred --HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --889999999999999748994431
No 299
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.1 Score=32.45 Aligned_cols=172 Identities=21% Similarity=0.331 Sum_probs=80.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
.|+++.--+.+|+.+.|.|+.|.|||+|+--++- .... ....|.+--. +++..++.. .++.
T Consensus 19 vL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g-l~~p--------------~~G~I~i~g~~i~~~~~~~~r~-~i~~ 82 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR-LVEL--------------SSGSILIDGVDISKIGLHDLRS-RISI 82 (221)
T ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHH-HEEE
T ss_conf 1754489986998999999999989999999967-9718--------------9848999999966199999974-0799
Q ss_pred HHHHC---C----CCCC-CCCCCHHHHHHHHHH---HHHHHHCC----EEEECC-CCCCHHH--HHHHHHHHCCCCCCCE
Q ss_conf 87410---1----1000-121376889989999---99986278----078258-9988999--9998864022444746
Q gi|254780332|r 285 QTEVP---S----SKIR-RGELTRPDYEKIVAC---SQVMQKLP----LYIDQT-GGISMSQ--LATRARRLKRQRGLDL 346 (504)
Q Consensus 285 ~s~I~---~----~~i~-~g~l~~~e~~~i~~a---~~~l~~~~----l~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~ 346 (504)
..+-| . ..|. .+..++++.....+. .+.+...+ ..+.+. ..+|-.+ -.+.+|.+. .++++
T Consensus 83 v~Q~~~lf~~Tv~eNi~~~~~~~~~~i~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LSgGqkQrv~lARal~--~~p~i 160 (221)
T cd03244 83 IPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL--RKSKI 160 (221)
T ss_pred EECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 9303523560088750710237999999988751608999741044454703666779999999999999996--59999
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+...- +.. .-..|...|+...+ +..||..++ | + ..+.+ ||-|++|
T Consensus 161 lilD-----Epts~L-D~~--~~~~i~~~l~~~~~--~~Tvi~itH-------~---------l---~~~~~-~Dri~vl 210 (221)
T cd03244 161 LVLD-----EATASV-DPE--TDALIQKTIREAFK--DCTVLTIAH-------R---------L---DTIID-SDRILVL 210 (221)
T ss_pred EEEE-----CCCCCC-CHH--HHHHHHHHHHHHCC--CCEEEEEEC-------C---------H---HHHHH-CCEEEEE
T ss_conf 9997-----975679-999--99999999998779--989999915-------8---------8---99983-9989999
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
.
T Consensus 211 ~ 211 (221)
T cd03244 211 D 211 (221)
T ss_pred E
T ss_conf 8
No 300
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.09 E-value=0.051 Score=34.84 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=18.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHH
Q ss_conf 6776213100276999999999
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYN 242 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~ 242 (504)
..|..|.-|+|||+++.|+|..
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~ 23 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAAL 23 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 8999589986099999999997
No 301
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=96.07 E-value=0.088 Score=33.02 Aligned_cols=140 Identities=21% Similarity=0.352 Sum_probs=66.7
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
+.+||++-|-|.+|.|||||. ++--.. ....-..|.|---+|++ .|.=...++|+
T Consensus 28 i~~GE~~~IvG~SGSGKSTLL-HlLGGL--------------D~PT~G~v~f~G~~l~~----------lS~~~~~~LRN 82 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLL-HLLGGL--------------DNPTSGEVLFNGQSLSK----------LSSNERAKLRN 82 (221)
T ss_pred EECCCEEEEECCCCCCHHHHH-HHHHCC--------------CCCCCCEEEECCCCHHH----------CCHHHHHHHHH
T ss_conf 306633798736787168999-987306--------------89963158970632344----------04467887512
Q ss_pred CCC----------------------------CHHHHHHHHHHHHHHHHCCE--EEECCCC-CCH--HHHHHHHHHHCCCC
Q ss_conf 213----------------------------76889989999999862780--7825899-889--99999886402244
Q gi|254780332|r 296 GEL----------------------------TRPDYEKIVACSQVMQKLPL--YIDQTGG-ISM--SQLATRARRLKRQR 342 (504)
Q Consensus 296 g~l----------------------------~~~e~~~i~~a~~~l~~~~l--~I~d~~~-~ti--~~I~~~~r~~~~~~ 342 (504)
.+| +.. +.-..|.+-|.+-.| -|+..|+ +|= -|=.|.||.++ .
T Consensus 83 ~~LGFiYQFHHLL~dFtaLENVaMP~LIg~~s~~--ea~~~A~~mL~~VgL~~R~~h~PSELSGGERQRvAIARALv--N 158 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSKK--EAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV--N 158 (221)
T ss_pred HHCCCEEEHHHCCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH--C
T ss_conf 2258444320203000026887777753589988--99999999988607334455577734563379999999861--8
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 47467767135325664432113788999999999999882791999771
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
.+++|+=| .|.++=..+....|-+ =++.|=++.++..|+++.
T Consensus 159 ~P~lvlAD-----EPTGNLD~~~a~~iF~---L~~eLN~~~~TsflvVTH 200 (221)
T TIGR02211 159 QPSLVLAD-----EPTGNLDNNNAKSIFE---LMLELNRELNTSFLVVTH 200 (221)
T ss_pred CCCEEECC-----CCCCHHHHHHHHHHHH---HHHHHHHHCCCEEEEEEC
T ss_conf 97658612-----9885323777999999---999988653916999834
No 302
>KOG0065 consensus
Probab=96.06 E-value=0.038 Score=35.79 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
..-|++..|=++||.|+-+-|-.|.|||+|+--+|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred EEHHHCCCEEECCCCEEEHHCCCCCCHHHHHHHHH
T ss_conf 37532584686478364012477876577999985
No 303
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=96.06 E-value=0.041 Score=35.59 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=25.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6776213100276999999999985101112333
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD 254 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~ 254 (504)
+.|....-|+|||+++.|+|...|..++..+..+
T Consensus 4 Iai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID 37 (244)
T pfam06564 4 LALQGVRGGVGTTSLTAALGWALQQLGESVLVID 37 (244)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9996699986199999999999997799589996
No 304
>PRK13542 consensus
Probab=96.03 E-value=0.12 Score=31.91 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCEEEEE------ECCCCHHHHH
Q ss_conf 776556416772677621310027699999999998510111233333212----479758999------5852179998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT----INGGIVGFY------SLEMSSEQLA 278 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~----~~g~~Vl~f------SlEMs~~el~ 278 (504)
|+.+--.+++|+++.|-|.-|.|||+|.-.++--. ............... .....+.|+ ..+|+..|-.
T Consensus 34 l~~isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll-~p~~G~I~~~G~~i~~~~~~~~~~~~~v~~~~~l~~~ltv~enl 112 (224)
T PRK13542 34 FRGIDISLAPGDLLQVMGPNGSGKTSLLRVLSGLM-PPAEGDLYWRGRAVRAGDPDYLQQLAYVGHANGIDPDLSAFENL 112 (224)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHHH
T ss_conf 84616787599799999999999999999995797-88852899999999879988884447866633358787299999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 789999874101100012137688998999999986278078258998899999--988640224447467767135325
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
++.+...+.. . +-+++.++...+.=.++.-.....+|-.+-+ +.+|.+. .+.++++.| .
T Consensus 113 -~~~~~~~~~~---------~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~--~~p~illLD-----E 173 (224)
T PRK13542 113 -RFAARLAGQQ---------A--TADAVHHALARFGLDRVMHAPARTLSQGQRRRVALARLAL--TPRALWLLD-----E 173 (224)
T ss_pred -HHHHHHCCCC---------C--HHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----C
T ss_conf -9999873887---------4--6999999999849902546881249999999999999980--799889973-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6644321137889999999999998827919997713822
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQ 396 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~ 396 (504)
+... -+ ......+..-++.++++-...||+..||...
T Consensus 174 Ptag-LD--~~~~~~l~~~i~~~~~~g~tvIi~tH~l~~~ 210 (224)
T PRK13542 174 PLTS-LD--DASAACFHTLLDEHLRRGGMAVVATHQLLPG 210 (224)
T ss_pred CCCC-CC--HHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 5354-89--9999999999999996899899995887488
No 305
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.16 Score=30.99 Aligned_cols=28 Identities=36% Similarity=0.682 Sum_probs=23.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 7726776213100276999999999985
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~ 245 (504)
+|-...+.|.||+|||+++-.||...-+
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~R 376 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGR 376 (782)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 8857999789988701189999999589
No 306
>PRK13768 GTPase; Provisional
Probab=96.02 E-value=0.094 Score=32.81 Aligned_cols=144 Identities=21% Similarity=0.265 Sum_probs=70.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH-HHHHHHHHCCCCCCCC-CC
Q ss_conf 677621310027699999999998510111233333212479758999585217999878-9999874101100012-13
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR-IISEQTEVPSSKIRRG-EL 298 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R-~is~~s~I~~~~i~~g-~l 298 (504)
.++|-|.||.|||+|+-.+..+... .|.+|.++.|.=..+.+--. -+-..-=|+...++.. .|
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~---------------~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~L 68 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEE---------------QGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGL 68 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCC
T ss_conf 8999899999889999999999997---------------6997599978986658999988637861789999988198
Q ss_pred CHH---------HHHHHHHHHHHHHHC--CEEEECCCCC----C-HHHHHHHHHHHCCCCC-CCEEEECCHHHCCCCCCC
Q ss_conf 768---------899899999998627--8078258998----8-9999998864022444-746776713532566443
Q gi|254780332|r 299 TRP---------DYEKIVACSQVMQKL--PLYIDQTGGI----S-MSQLATRARRLKRQRG-LDLLIVDYIQLMTTSKKI 361 (504)
Q Consensus 299 ~~~---------e~~~i~~a~~~l~~~--~l~I~d~~~~----t-i~~I~~~~r~~~~~~g-i~~vvIDYLqli~~~~~~ 361 (504)
-+. -..++.+..+++.+. ...|.|+|+- | -.-.+..++.+.+... +-+.++|- +.++.+.+
T Consensus 69 GPNGali~~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~-~~~~~~~~- 146 (253)
T PRK13768 69 GPNGALIASVDLLLTKAEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDA-VLAKDPSD- 146 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECH-HHHCCHHH-
T ss_conf 9646899999999998999999985158875998268744322234079999999863686289998450-56378879-
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHHCCCEEEE
Q ss_conf 2113788999999999999--8827919997
Q gi|254780332|r 362 EENRVLEITGITMALKALA--KELNIPIIAL 390 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~lA--~e~~ipvi~l 390 (504)
.||.-|-.++ -.+++|.|.+
T Consensus 147 ---------fiS~~L~a~s~m~~l~lP~inV 168 (253)
T PRK13768 147 ---------FVSLLLLALSVQLRLGLPQIPV 168 (253)
T ss_pred ---------HHHHHHHHHHHHHHCCCCEEEE
T ss_conf ---------9999999999999739997998
No 307
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.01 E-value=0.045 Score=35.27 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
.-+.=||+.+=+.+ .-|.. .++||+|+||+|||-+...++. .|.+|+ -| |.+|
T Consensus 118 ~~l~GGYKayR~~v~~~l~~-~~~vl~G~TG~GKT~lL~~L~~-------------------~G~~vi--DL----EglA 171 (333)
T PRK11784 118 PLLEGGYKAYRRFVIDTLEE-PLVVLGGMTGSGKTRLLQALAN-------------------AGAQVL--DL----EGLA 171 (333)
T ss_pred CCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHH-------------------CCCCEE--CH----HHHH
T ss_conf 60376089999999998546-8599867888778999999997-------------------599743--38----9886
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEEEECCCC
Q ss_conf 78999987410110001213768899-899999998627807825899
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~I~d~~~ 325 (504)
.-==|..++++. ++-+...++ .+......+...|+||+|.+.
T Consensus 172 ~HRGS~FG~~~~-----~QPsQk~FE~~L~~~l~~~~~~~i~vE~ESr 214 (333)
T PRK11784 172 NHRGSSFGRLGG-----PQPSQKDFENLLAEALLKLDPAPIVVEDESR 214 (333)
T ss_pred HCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 325642358899-----9987899999999999808998569960100
No 308
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.01 E-value=0.16 Score=30.96 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=78.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217-99987899998741011000121
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~~~i~~g~ 297 (504)
...+++-|-||.|||..-++++..+.. +|+.|++.-.|-+- .|+..|+-+.. |.....+ ...
T Consensus 186 ~~~~LL~GvTGSGKTevYl~li~~~l~---------------~GkqvLiLvPEI~lt~q~~~rl~~~f-g~~v~v~-HS~ 248 (699)
T PRK05580 186 FSAFLLDGVTGSGKTEVYLQAIAEALA---------------QGKQALVLVPEIALTPQLLARFRARF-GARVAVL-HSG 248 (699)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHH---------------CCCCEEEEECCHHHHHHHHHHHHHHH-CCCEEEE-CCC
T ss_conf 871787478986079999999999997---------------39978999176787899999999870-9957996-488
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 376889989999999862780782589988999999886402244474677671353256644-3211378899999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK-IEENRVLEITGITMAL 376 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~-~~~~r~~~i~~is~~l 376 (504)
+++.+.-..+..+.. .+..+.|--++.+ +.=-.++++||||-=+= .+-+ ...-|++.- +++
T Consensus 249 ls~~eR~~~w~~i~~-G~~~IVIGtRSAv-----------FaP~~nLgLIIVDEEhd--~SYKq~~~Pry~AR-dvA--- 310 (699)
T PRK05580 249 LSDGERYRAWLAALR-GEARVVIGTRSAL-----------FAPFKNLGLIIVDEEHD--DSYKQQDGPRYHAR-DVA--- 310 (699)
T ss_pred CCHHHHHHHHHHHHC-CCCEEEEECCCEE-----------ECCCCCCCEEEEECCCC--HHHCCCCCCCCCHH-HHH---
T ss_conf 985799999999976-9971999736011-----------06578984899973654--54446668761199-999---
Q ss_pred HHHHHHHCCCEEEEEE
Q ss_conf 9999882791999771
Q gi|254780332|r 377 KALAKELNIPIIALSQ 392 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQ 392 (504)
-..|+..|||+|+.|-
T Consensus 311 ~~Ra~~~~~~liLgSa 326 (699)
T PRK05580 311 VLRAKQEGCPVVLGSA 326 (699)
T ss_pred HHHHHHHCCCEEECCC
T ss_conf 9999984998896168
No 309
>PRK13766 Hef nuclease; Provisional
Probab=96.00 E-value=0.14 Score=31.52 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999999988279199977
Q gi|254780332|r 372 ITMALKALAKELNIPIIALS 391 (504)
Q Consensus 372 is~~lK~lA~e~~ipvi~ls 391 (504)
+-.+++.|+..+.-|++++-
T Consensus 612 l~~Q~~~l~~~y~~p~liiE 631 (764)
T PRK13766 612 LFDQVKDLKRAYERPVLIIE 631 (764)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999974477689997
No 310
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=96.00 E-value=0.032 Score=36.40 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHH----HH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 34336778999998741-1236644321013776----55-641677267762131002769999999999851011123
Q gi|254780332|r 179 SDAMTVAIDMAGQAFNR-DGRLAGVSTGIQTLDK----QM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQ 252 (504)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~----~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~ 252 (504)
...++.++++.+....+ +|.+...+-+=..|++ .+ .=.+++++-||-|+||-|||++ |..|..+
T Consensus 384 ~~~~~~a~ER~~~~~~~~~GGmlaas~~~~rLs~EQ~~Av~hvt~s~~iavVvG~AGtGKSt~-L~aAR~A--------- 453 (888)
T TIGR02768 384 PPIVDAAIERVDRILRRDSGGMLAASDQHERLSEEQKEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREA--------- 453 (888)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH-HHHHHHH---------
T ss_conf 778888887666652278864011167877745899999875328996489974899876678-9999999---------
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEEEECCCCCC-HHH
Q ss_conf 3333212479758999585217999878999987410110001213768899-89999999862780782589988-999
Q gi|254780332|r 253 TDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLYIDQTGGIS-MSQ 330 (504)
Q Consensus 253 ~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~I~d~~~~t-i~~ 330 (504)
|-.+|+.|.==-| + =.+.-=|-..|||....|.+ |+ ...+....|....++|-|..+|= -.+
T Consensus 454 -----We~~Gy~V~GAAL--s--GKAAegLe~~sGI~SRTLAS-------le~aW~~G~d~L~~~dvLviDEAGMV~S~Q 517 (888)
T TIGR02768 454 -----WEAAGYRVIGAAL--S--GKAAEGLEAESGIESRTLAS-------LEYAWANGRDLLEDKDVLVIDEAGMVGSRQ 517 (888)
T ss_pred -----HHHCCCEEEEHHH--H--HHHHHHHHCCCCCCHHHHHH-------HHHHHHCCCCCCCCCCEEEEECCCCHHHHH
T ss_conf -----9873977871545--5--58988730026875047887-------999987387522477668985154414677
Q ss_pred HHHHHHHHCCCCCCCEEEE-CCHHH
Q ss_conf 9998864022444746776-71353
Q gi|254780332|r 331 LATRARRLKRQRGLDLLIV-DYIQL 354 (504)
Q Consensus 331 I~~~~r~~~~~~gi~~vvI-DYLql 354 (504)
+ +++-+...+-|.++|.| |.-||
T Consensus 518 m-~r~l~~A~~AGaKvVLvGD~~QL 541 (888)
T TIGR02768 518 M-ARVLKEAEEAGAKVVLVGDPEQL 541 (888)
T ss_pred H-HHHHHHHHHCCCCEEEECCHHHH
T ss_conf 8-89999998727605984885782
No 311
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.98 E-value=0.043 Score=35.37 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---8521799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~i 282 (504)
..-||.+.--+++|+.+.|-|+.|.|||+|.--++=... .......|.|.. ..|+..+.+.+
T Consensus 13 ~~vL~~vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~-------------~~~~~G~I~~~g~~i~~~~~~~~~~~-- 77 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-------------YEVTEGEILFKGEDITDLPPEERARL-- 77 (200)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC-------------CCCCCCEEEECCEECCCCCHHHHHHC--
T ss_conf 998855056887998999996899999999999707777-------------78520079999999886999999976--
Q ss_pred HHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf 99874101100012-137688998999999986278078258998899999--988640224447467767135325664
Q gi|254780332|r 283 SEQTEVPSSKIRRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 283 s~~s~I~~~~i~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
++.+. .+.+ .+..- ++.+....+ + -++|=.+-+ +.+|.+. .++++++.| .|..
T Consensus 78 ----gi~~~-~q~~~~~~~~---~~~~~l~~~---~------~~LSGGekqrv~iaral~--~~P~lllLD-----EPts 133 (200)
T cd03217 78 ----GIFLA-FQYPPEIPGV---KNADFLRYV---N------EGFSGGEKKRNEILQLLL--LEPDLAILD-----EPDS 133 (200)
T ss_pred ----CEEEE-CCCHHHCCCC---CHHHHHHHH---C------CCCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCCC
T ss_conf ----94896-3676870798---499999764---6------367999999999999996--099999996-----9622
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH-CCEEEEEEC
Q ss_conf 432113788999999999999882791999771382201689999840101432422331-387889725
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD-ADVVLFVIR 428 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd-AD~v~~l~R 428 (504)
. -+ ......+.+-++.++++ ++.||..++--. .+++- ||-|++|+.
T Consensus 134 g-LD--~~~~~~i~~~i~~l~~~-g~tiiiitH~~~-------------------~~~~~~~Drv~vl~~ 180 (200)
T cd03217 134 G-LD--IDALRLVAEVINKLREE-GKSVLIITHYQR-------------------LLDYIKPDRVHVLYD 180 (200)
T ss_pred C-CC--HHHHHHHHHHHHHHHHC-CCEEEEEEECHH-------------------HHHHHCCCEEEEEEC
T ss_conf 6-99--99999999999999857-999999996368-------------------776646999999879
No 312
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.98 E-value=0.17 Score=30.87 Aligned_cols=140 Identities=15% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCC--CCCC
Q ss_conf 772677621310027699999999998510111233333212479758999585217-9998789999874101--1000
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPS--SKIR 294 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~--~~i~ 294 (504)
.|.=+++.+.||.|||..++--+.+.... ...|..++|+..--+- .|+..++-........ ..+
T Consensus 13 ~g~~~iv~~pTGsGKT~~~~~~~l~~~~~------------~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~- 79 (167)
T pfam00270 13 EGKDVLVQAPTGSGKTLAFLLPALQALLK------------NPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALL- 79 (167)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHH------------CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE-
T ss_conf 69978998899975899999999999874------------77898799990608888899988643210267640464-
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 121376-889989999999862780782589988999999886402-244474677671353256644321137889999
Q gi|254780332|r 295 RGELTR-PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGI 372 (504)
Q Consensus 295 ~g~l~~-~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~i 372 (504)
.|..+. +++..+ ....++.|. |...+...+.+-. .-..++++|||=.+.|... ++...+..+
T Consensus 80 ~g~~~~~~~~~~~------~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~-----~~g~~~~~i 143 (167)
T pfam00270 80 YGGDSPKEQLRKL------KKGPDILVG-----TPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQ-----GFGDDLEEI 143 (167)
T ss_pred CCCCCHHHHHHHH------CCCCCEEEE-----CHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCC-----CHHHHHHHH
T ss_conf 1786178898764------057707994-----789999999803312110038998808867335-----829999999
Q ss_pred HHHHHHHHHHHCCCEEEEE
Q ss_conf 9999999988279199977
Q gi|254780332|r 373 TMALKALAKELNIPIIALS 391 (504)
Q Consensus 373 s~~lK~lA~e~~ipvi~ls 391 (504)
-+.|+ -++++|++|
T Consensus 144 l~~l~-----~~~q~v~~S 157 (167)
T pfam00270 144 LRRLP-----PKRQILLLS 157 (167)
T ss_pred HHHCC-----CCCCEEEEE
T ss_conf 98579-----999789997
No 313
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.97 E-value=0.17 Score=30.82 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=77.8
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCCCCCEEEEEECCCCHHH-----H
Q ss_conf 776556416772677621310027699999999998510111233------33321247975899958521799-----9
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQT------DGSYKTINGGIVGFYSLEMSSEQ-----L 277 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~------~~~~~~~~g~~Vl~fSlEMs~~e-----l 277 (504)
|+++.--+++|+.+.|.|.-|.|||+|+--++-............ .....+.-...+.|++-++.... +
T Consensus 276 l~~vs~~v~~GE~~~i~G~nGsGKSTLl~~l~G~~p~~~~g~i~l~g~~~~~g~~~~~~~~~ig~v~~~~~~~~~~~~~~ 355 (490)
T PRK10938 276 LNNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTV 355 (490)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECEECCCCCCHHHHHCCEEEECCCCCCCCCCCCCH
T ss_conf 85357898389889998678887999999980889767676189825124776637888605078624223355412309
Q ss_pred HHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCEE--EECCC--CCCHHHHH--HHHHHHCCCCCCCEEEEC
Q ss_conf 87899998741011000-1213768899899999998627807--82589--98899999--988640224447467767
Q gi|254780332|r 278 ATRIISEQTEVPSSKIR-RGELTRPDYEKIVACSQVMQKLPLY--IDQTG--GISMSQLA--TRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~-~g~l~~~e~~~i~~a~~~l~~~~l~--I~d~~--~~ti~~I~--~~~r~~~~~~gi~~vvID 350 (504)
..-++ ++. ...+. ....++.+...+.+ .+....|. ..+.| .+|-.+-+ +.+|.+. .++++++.|
T Consensus 356 ~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~---~l~~~~l~~~~~~~p~~~LSGGqqqrv~lAr~L~--~~P~vLiLD 426 (490)
T PRK10938 356 RNVIL---SGY-FDSIGIYQAVSDRQQKLAQQ---WLDILGIDKRTADAPFHSLSWGQQRLALIVRALV--KHPTLLILD 426 (490)
T ss_pred HHHHH---HHH-HHHCCHHCCCCHHHHHHHHH---HHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHH--HCCCEEEEE
T ss_conf 99997---543-32100110386899999999---9997699835705952319999999999999997--199989996
Q ss_pred CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 135325664432113788999999999999882791999771
Q gi|254780332|r 351 YIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 351 YLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
.|. +.-+ ...-.+|.+-|..|+.+.+..||..|.
T Consensus 427 -----EPT-~gLD--~~~~~~i~~ll~~l~~~g~~~il~vSH 460 (490)
T PRK10938 427 -----EPL-QGLD--PLNRQLVRRFVDVLISEGETQLLFVSH 460 (490)
T ss_pred -----CCC-CCCC--HHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -----875-4769--999999999999999779929999748
No 314
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=95.96 E-value=0.11 Score=32.43 Aligned_cols=105 Identities=19% Similarity=0.335 Sum_probs=70.4
Q ss_pred CCEEE-EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC----
Q ss_conf 72677-6213100276999999999985101112333332124797589995852179998789999874101100----
Q gi|254780332|r 219 SDLII-IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKI---- 293 (504)
Q Consensus 219 G~l~V-iaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i---- 293 (504)
++.+| -.|.-|+|||+..-|++...|. .|+.|+.+-+. +..|-+-...|...+-+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~---------------~GkKv~liD~D-----iGLRNLDlimGlE~RiVYd~v 61 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQ---------------LGKKVVLIDFD-----IGLRNLDLIMGLENRIVYDLV 61 (272)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHH---------------CCCEEEEEECC-----CCCHHHHHHHCCCCEEEEEEH
T ss_conf 6499994488876743106778999997---------------39859999667-----672044666434201565401
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHH-CCEEE------ECCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf --0121376889989999999862-78078------258998899999988640224447467767
Q gi|254780332|r 294 --RRGELTRPDYEKIVACSQVMQK-LPLYI------DQTGGISMSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 294 --~~g~l~~~e~~~i~~a~~~l~~-~~l~I------~d~~~~ti~~I~~~~r~~~~~~gi~~vvID 350 (504)
..|+ -++.+|.-+=+. -+||+ -|...+|.+++...+..++. .+-|.|++|
T Consensus 62 dVi~g~------~~l~QALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~-~~fDyIi~D 120 (272)
T COG2894 62 DVIEGE------ATLNQALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA-MDFDYIIID 120 (272)
T ss_pred HHHCCC------CCHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEC
T ss_conf 344476------63656764035678526614432367222799999999999976-699889964
No 315
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.96 E-value=0.033 Score=36.27 Aligned_cols=169 Identities=21% Similarity=0.202 Sum_probs=95.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
.-...+.|+.|.||+||||..--++..++...-.-+. .........+|+.--. .-. |.|=+.-.||-+..-|++
T Consensus 362 ~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~--~~~~vndd~~v~LaAP---TGr-AAkRl~E~TG~~a~TIHR 435 (769)
T TIGR01448 362 AIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLD--KDDYVNDDLPVVLAAP---TGR-AAKRLAEVTGLEALTIHR 435 (769)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCEEEEECC---CHH-HHHHCCCCCCCHHHHHHH
T ss_conf 8609489985778886168999999999871687755--3124567764887377---437-888511002621234778
Q ss_pred C-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCC--CCCCCEEEE-CCHHHCCCCCCCCCHHHHHHHH
Q ss_conf 2-13768899899999998627807825899889999998864022--444746776-7135325664432113788999
Q gi|254780332|r 296 G-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKR--QRGLDLLIV-DYIQLMTTSKKIEENRVLEITG 371 (504)
Q Consensus 296 g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~--~~gi~~vvI-DYLqli~~~~~~~~~r~~~i~~ 371 (504)
= .++..+. .-.+...+--++.|.|.|..+| ++++-.. ++-. --+..+++| |-=||= +-..+
T Consensus 436 LlG~~~~~~-~~~k~~~~~~~~DL~IvDE~SM-~Dt~L~~--~lL~a~P~~a~lllVGD~DQLP--SV~pG--------- 500 (769)
T TIGR01448 436 LLGYGSDTK-SENKNLEDPIDADLLIVDESSM-VDTWLAS--SLLAAVPDHARLLLVGDADQLP--SVGPG--------- 500 (769)
T ss_pred HHCCCCCCC-CCCHHHCCCCCCCEEEEECCCH-HHHHHHH--HHHHHCCCCCEEEEECCCCCCC--CCCCC---------
T ss_conf 636898887-3211011347877699814621-8899999--9986179777798883768889--88644---------
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCC----------CCCCCCCC
Q ss_conf 9999999998827919997713822016----------89999840
Q gi|254780332|r 372 ITMALKALAKELNIPIIALSQLSRQVEN----------RDNKRPQL 407 (504)
Q Consensus 372 is~~lK~lA~e~~ipvi~lsQLnR~~e~----------r~~krP~l 407 (504)
+-||.|+.---||++-|.|+-|+.++ +.+.+|.|
T Consensus 501 --~VL~DLi~s~~iP~~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvl 544 (769)
T TIGR01448 501 --QVLKDLIQSKVIPVTRLTKVYRQAEGSSIITLAHKILQGEAPVL 544 (769)
T ss_pred --HHHHHHHHCCCCCEEECCCEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf --08999984688661212111241136646788898731788752
No 316
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.95 E-value=0.17 Score=30.77 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
..||++.--+.+|+++-+.|+-|.|||++.--++ ..... ....|.++--++....-..| ..+
T Consensus 14 ~al~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~-Gl~~p--------------~~G~i~i~G~~~~~~~~~~~---~ig 75 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL-GLIKP--------------DSGEITFDGKSYQKNIEALR---RIG 75 (208)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCCEEEECCEECCCCHHHHH---HEE
T ss_conf 9871516688698199999999999999999995-78378--------------98999999999997968571---089
Q ss_pred HHCCCCCCCCCCCHHH------------HHHHHHHHHHHHHCCEEEECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECC
Q ss_conf 4101100012137688------------998999999986278078258-998899999--9886402244474677671
Q gi|254780332|r 287 EVPSSKIRRGELTRPD------------YEKIVACSQVMQKLPLYIDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 287 ~I~~~~i~~g~l~~~e------------~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDY 351 (504)
-++-..-.-+.++-.| .+++.+..+.+. +.-+.+.. ..+|-.+-+ +.++.+ -+++++++.|
T Consensus 76 ~~~~~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~kqrl~la~al--~~~p~lliLD- 151 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG-LKDSAKKKVKGFSLGMKQRLGIALAL--LGNPDLLILD- 151 (208)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCHHHCCCHHHCCHHHHHHHHHHHHH--HCCCCEEEEE-
T ss_conf 9947776789889999999999874998899999999809-95033690356999999999999998--5699999993-
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 35325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 352 IQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 352 Lqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|.. .-+ ......+..-|+.++++ +..|+..|+ +-..+|+-||-|++|+.
T Consensus 152 ----EPt~-GLD--~~~~~~i~~~l~~l~~~-g~til~~sH-------------------~l~e~~~~~dri~vl~~ 201 (208)
T cd03268 152 ----EPTN-GLD--PDGIKELRELILSLRDQ-GITVLISSH-------------------LLSEIQKVADRIGIINK 201 (208)
T ss_pred ----CCCC-CCC--HHHHHHHHHHHHHHHHC-CCEEEEECC-------------------CHHHHHHHCCEEEEEEC
T ss_conf ----8876-899--99999999999999958-999999898-------------------68999996999999989
No 317
>PRK06696 uridine kinase; Validated
Probab=95.95 E-value=0.021 Score=37.71 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=36.5
Q ss_pred HHHHHHHHHHCCCC-E-EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 13776556416772-6-77621310027699999999998510111233333212479758999585
Q gi|254780332|r 207 QTLDKQMGGLQRSD-L-IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 207 ~~LD~~~gGl~~G~-l-~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
..|=+.+..+.||. + +-|+|.||.|||+||-.++..... .|.+|+.+++.
T Consensus 12 ~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~---------------~G~~V~~v~~D 63 (227)
T PRK06696 12 KEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKK---------------RGRPVIRASID 63 (227)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEECCC
T ss_conf 99999998359998689997789987879999999999974---------------69948997154
No 318
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=95.94 E-value=0.032 Score=36.35 Aligned_cols=173 Identities=17% Similarity=0.287 Sum_probs=88.0
Q ss_pred CCCCCH-HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCEEEEEECCCCHHHHHH
Q ss_conf 432101-3776556416772677621310027699999999998510111233333212-47975899958521799987
Q gi|254780332|r 202 VSTGIQ-TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT-INGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 202 i~TG~~-~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~-~~g~~Vl~fSlEMs~~el~~ 279 (504)
.+.|.. .||.++--+.+|+++-+.|-+|.||||| |++...+.+......++...... -.+..|-|.=-.|.--=.=.
T Consensus 11 Y~g~~~~AL~~~~~~~~kGem~fL~GHSGaGKST~-lkLi~~~~~P~~G~i~~~G~d~~~L~~r~~P~LRr~iG~VFQD~ 89 (216)
T TIGR00960 11 YPGGAQPALDNVTFHIDKGEMVFLVGHSGAGKSTL-LKLILGIEKPTRGKIRFSGQDLTRLRGREVPFLRRHIGMVFQDH 89 (216)
T ss_pred CCCCCCHHHCCCEEEECCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEECCEEECCH
T ss_conf 54324410038647853850799856888607899-99998522899860787154210015774673000104267011
Q ss_pred HHHHHHHH-----HCCCCCCCCCCCHHHH-HHHHHHHHHHH--HCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEE
Q ss_conf 89999874-----1011000121376889-98999999986--2780782589988999--9998864022444746776
Q gi|254780332|r 280 RIISEQTE-----VPSSKIRRGELTRPDY-EKIVACSQVMQ--KLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 280 R~is~~s~-----I~~~~i~~g~l~~~e~-~~i~~a~~~l~--~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvI 349 (504)
|++...+= +|+.- -|. ...+| +++..|.+... +... +....+|-.| =.+.+|.++ +.+.+.+=
T Consensus 90 ~LL~drtv~dNVa~pL~i--iG~-~~~~~~~rv~~aL~~VGL~~K~~--~lP~~LSGGEQQRv~IARA~V--~~P~lLLA 162 (216)
T TIGR00960 90 RLLSDRTVYDNVALPLRI--IGV-PGRDINERVSAALEKVGLKGKAH--ALPVQLSGGEQQRVAIARAVV--NKPALLLA 162 (216)
T ss_pred HHHHHCCHHHHHHHHHHH--CCC-CCCCHHHHHHHHHHHCCCCCHHH--CCCCCCCCCCHHHHHHHHHHC--CCCCCEEE
T ss_conf 553116554552433552--289-97426789999987306112124--076200485034556644430--67970131
Q ss_pred CCHHHCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 71353256644321137889-99999999999882791999771
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEI-TGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i-~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
| .|.++-. .+. -+|.+=++.+ -+.++.|++.+.
T Consensus 163 D-----EPTGNLD----~~~S~~il~Lf~~~-n~~G~TVl~ATH 196 (216)
T TIGR00960 163 D-----EPTGNLD----PELSRDILRLFEEF-NRAGTTVLVATH 196 (216)
T ss_pred E-----CCCCCCC----HHHHHHHHHHHHHH-HCCCCEEEECCC
T ss_conf 0-----8898878----88899999999875-037854777102
No 319
>PHA02518 ParA-like protein; Provisional
Probab=95.94 E-value=0.18 Score=30.74 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=31.0
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 762131002769999999999851011123333321247975899958521799987899
Q gi|254780332|r 223 IIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRII 282 (504)
Q Consensus 223 Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~i 282 (504)
|.--.-|+|||+++.|+|...+. +|++|+++-+.-... +.+|.
T Consensus 5 v~n~KGGvGKTT~a~nLA~~la~---------------~G~~VlliD~DpQ~s--~~~w~ 47 (211)
T PHA02518 5 VLNQKGGAGKTTVATNLASWLHA---------------DGHKVLLVDLDPQGS--STDWA 47 (211)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCC--HHHHH
T ss_conf 98089997499999999999997---------------899489997799967--88999
No 320
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.08 Score=33.34 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797589995852179998789999874101100012
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g 296 (504)
..|.|+++-|.=..|||+-.+.-+.+... .|.+|+.|..+-...--.. .+++..|+....
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~---------------~g~~v~vfkp~iD~R~~~~-~V~Sr~G~~~~A---- 61 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKE---------------AGMKVLVFKPAIDTRYGVG-KVSSRIGLSSEA---- 61 (201)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCCCCC-EEEECCCCCCCC----
T ss_conf 44789999715768635999999999997---------------5980899852533535643-365315876653----
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 13768899899999998627807825899889999998864022444746776713532566443211378899999999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMAL 376 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~l 376 (504)
.-|. +-.+|...+.....+..+++|+||=.|.... ++.-.|
T Consensus 62 ---------------------~~i~-----~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~-------------~~v~~l 102 (201)
T COG1435 62 ---------------------VVIP-----SDTDIFDEIAALHEKPPVDCVLIDEAQFFDE-------------ELVYVL 102 (201)
T ss_pred ---------------------EECC-----CHHHHHHHHHHCCCCCCCCEEEEEHHHHCCH-------------HHHHHH
T ss_conf ---------------------5638-----7578999998513478757899961671897-------------899999
Q ss_pred HHHHHHHCCCEEEEEECCCC
Q ss_conf 99998827919997713822
Q gi|254780332|r 377 KALAKELNIPIIALSQLSRQ 396 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQLnR~ 396 (504)
..+|-.+|+|||+ +=|...
T Consensus 103 ~~lad~lgi~Vi~-~GL~~D 121 (201)
T COG1435 103 NELADRLGIPVIC-YGLDTD 121 (201)
T ss_pred HHHHHHCCCEEEE-ECCCCC
T ss_conf 9998614988999-544653
No 321
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.92 E-value=0.076 Score=33.51 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=63.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC----
Q ss_conf 6776213100276999999999985101112333332124797589995852179998789999874101100012----
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRG---- 296 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g---- 296 (504)
++||.|.-|.|||+|..++..+ .+|+++.++--|++...+=..+++. ++.+...+.+|
T Consensus 2 v~iitGFLGaGKTTll~~lL~~-----------------~~~~~~avIvNEfG~~~ID~~ll~~-~~~~v~el~~GCiCC 63 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE-----------------QHGRKIAVIENEFGEVGIDNQLVVD-TDEEIIEMNNGCICC 63 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHC-----------------CCCCCEEEEEECCCCCCCCHHHHHC-CCCEEEEECCCEEEE
T ss_conf 0899848889999999999847-----------------8899779997076554631667637-882499933871465
Q ss_pred CCCHHHHHHHHHHHHHHHHC-----CEEEECCCCCCHHHHHHHH---HHHCCCCCCC--EEEECCHHHC
Q ss_conf 13768899899999998627-----8078258998899999988---6402244474--6776713532
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKL-----PLYIDQTGGISMSQLATRA---RRLKRQRGLD--LLIVDYIQLM 355 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~-----~l~I~d~~~~ti~~I~~~~---r~~~~~~gi~--~vvIDYLqli 355 (504)
.+..+-...+.....++... .++|+-+.--.+..|...+ ..++....++ +.+||-.+..
T Consensus 64 s~~~dl~~~l~~l~~~~~~~~~~~d~iiIE~SGla~P~~i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~ 132 (158)
T cd03112 64 TVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHAN 132 (158)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCHHHHCEEECCCEEEEECHHHHH
T ss_conf 225158999999999765157887889996368788289999886071432107438769998189877
No 322
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.92 E-value=0.095 Score=32.76 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHCCCCCCCEEEECCHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 88640224447467767135325664432-11378899999999999988279199977138220168999984010143
Q gi|254780332|r 334 RARRLKRQRGLDLLIVDYIQLMTTSKKIE-ENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRE 412 (504)
Q Consensus 334 ~~r~~~~~~gi~~vvIDYLqli~~~~~~~-~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~ 412 (504)
.+|.+. .++++++.| .|...-. .++... +..-++.+.++.+..||+.+.= .
T Consensus 132 lAraL~--~~p~lllLD-----EPTs~LD~~~~~~~---l~~ll~~~~~~~~~tiIivtHd-~----------------- 183 (204)
T cd03240 132 LAETFG--SNCGILALD-----EPTTNLDEENIEES---LAEIIEERKSQKNFQLIVITHD-E----------------- 183 (204)
T ss_pred HHHHHH--CCCCEEEEE-----CCCCCCCHHHHHHH---HHHHHHHHHHCCCCEEEEEECC-H-----------------
T ss_conf 999984--599989981-----87666997899999---9999999985699899999449-8-----------------
Q ss_pred CCHHHHHCCEEEEEECHH
Q ss_conf 242233138788972556
Q gi|254780332|r 413 SGSIEQDADVVLFVIRDE 430 (504)
Q Consensus 413 Sg~IEqdAD~v~~l~R~~ 430 (504)
.+.+-||-|+.+.++.
T Consensus 184 --e~~~~aD~vv~i~kdG 199 (204)
T cd03240 184 --ELVDAADHIYRVEKDG 199 (204)
T ss_pred --HHHHHCCEEEEEECCC
T ss_conf --9998499599995898
No 323
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.032 Score=36.42 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=22.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 16772677621310027699999999
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAY 241 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~ 241 (504)
+.+|+++.|-|+.|.|||++.--+|-
T Consensus 21 i~~g~i~~l~GpsGaGKTTLl~~iaG 46 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINLISG 46 (352)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999999629999999976
No 324
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.91 E-value=0.18 Score=30.64 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-------CCHHHHH---
Q ss_conf 776556416772677621310027699999999998510111233333212479758999585-------2179998---
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE-------MSSEQLA--- 278 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE-------Ms~~el~--- 278 (504)
|+.+.--+++|+-+.|.|+-|.|||||+--|+-.. .. ......+..+..+.||+-+ ++..+..
T Consensus 335 l~~vsl~i~~Ge~ialvG~NGsGKSTLlk~l~G~l-~p------~~G~i~~g~~~~i~y~~Q~~~~l~~~~tv~~~l~~~ 407 (632)
T PRK11147 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QA------DSGRIHCGTKLEVAYFDQYRAELDPEKTVMDNLAEG 407 (632)
T ss_pred EEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CC------CCCEEEECCCCEEEEEHHHHHHCCCCCCHHHHHHHC
T ss_conf 76533335788779998898842779999860666-89------987799899870775515476459768699999732
Q ss_pred ----------HHHHHHHH--HHCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCHHHHHHHHHHHCCCC
Q ss_conf ----------78999987--410110001--21376889989999999862780782589--988999999886402244
Q gi|254780332|r 279 ----------TRIISEQT--EVPSSKIRR--GELTRPDYEKIVACSQVMQKLPLYIDQTG--GISMSQLATRARRLKRQR 342 (504)
Q Consensus 279 ----------~R~is~~s--~I~~~~i~~--g~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti~~I~~~~r~~~~~~ 342 (504)
..+++... +++...... +.|+-.|..|+.-|.--+.+-++.|-|.| .+.+..+.+....+. .+
T Consensus 408 ~~~~~~~~~~r~~~~~L~~f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~-~y 486 (632)
T PRK11147 408 KQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLD-SY 486 (632)
T ss_pred CHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH-HC
T ss_conf 32101155899999999985779889639155399999999999998577997899989876579999999999998-58
Q ss_pred CCCEEEE
Q ss_conf 4746776
Q gi|254780332|r 343 GLDLLIV 349 (504)
Q Consensus 343 gi~~vvI 349 (504)
.--+|||
T Consensus 487 ~Gtvl~V 493 (632)
T PRK11147 487 QGTLLLV 493 (632)
T ss_pred CCEEEEE
T ss_conf 9839999
No 325
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=95.91 E-value=0.11 Score=32.26 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=29.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 677621310027699999999998510111233333212479758999585
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
|+|+.|-|+.|||++|-+++...-. .|+.|.++|-|
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~---------------~~~~v~vi~d~ 36 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEE---------------KGYDVIVISDE 36 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEECCC
T ss_conf 9798579999688999999999997---------------59938997800
No 326
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.91 E-value=0.046 Score=35.19 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC-----CHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852-----17999878
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM-----SSEQLATR 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM-----s~~el~~R 280 (504)
.+-|+.+.--+.+|+.+.|-|+.|+|||+|..-++.=.-..... .....|.|.--++ ...++ .|
T Consensus 13 ~~~L~~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~~~~~~----------p~~G~I~~~g~~i~~~~~~~~~~-R~ 81 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA----------PDEGEVLLDGKDIYDLDVDVLEL-RR 81 (227)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC----------CCCEEEEECCEECCCCCCCHHHH-HH
T ss_conf 98883406788799899999999981999999997445026899----------81469999999998899587889-62
Q ss_pred HHH------------HHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECC--C-CCCHHH--HHHHHHHHCCCC
Q ss_conf 999------------9874101100012137688-998999999986278078258--9-988999--999886402244
Q gi|254780332|r 281 IIS------------EQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQT--G-GISMSQ--LATRARRLKRQR 342 (504)
Q Consensus 281 ~is------------~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~--~-~~ti~~--I~~~~r~~~~~~ 342 (504)
-++ ..-+|.+.--..+..+.++ .+++.++.+.+. ++=+..+. | .+|=.+ =.+.+|.+. .
T Consensus 82 ~ig~VfQ~~~lf~~TV~eNi~~~l~~~~~~~~~~~~~~v~~~L~~vg-L~~~~~~~~~p~~LSGGq~QRvaIArAL~--~ 158 (227)
T cd03260 82 RVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAA-LWDEVKDRLHALGLSGGQQQRLCLARALA--N 158 (227)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCHHHHCCCCCCCCCHHHHHHHHHHHHHH--C
T ss_conf 82687647766778099999999998389999999999999998779-97588445680228999999999999983--5
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCE
Q ss_conf 47467767135325664432113788999999999999882791999771382201689999840101432422331387
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADV 422 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~ 422 (504)
.+++++.| .+.+.- +. ..-.+|..-++.|.++ ..||..+. | -..+..-||-
T Consensus 159 ~P~iLllD-----EPTs~L-D~--~~~~~i~~li~~l~~~--~Tii~vTH----------------d---l~~a~~~aDr 209 (227)
T cd03260 159 EPEVLLLD-----EPTSAL-DP--ISTAKIEELIAELKKE--YTIVIVTH----------------N---MQQAARVADR 209 (227)
T ss_pred CCCEEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC--CEEEEEEC----------------C---HHHHHHHCCE
T ss_conf 99999968-----987657-98--9999999999999668--88999936----------------9---9999986999
Q ss_pred EEEEEC
Q ss_conf 889725
Q gi|254780332|r 423 VLFVIR 428 (504)
Q Consensus 423 v~~l~R 428 (504)
|++|+.
T Consensus 210 i~vl~~ 215 (227)
T cd03260 210 TAFLLN 215 (227)
T ss_pred EEEEEC
T ss_conf 999989
No 327
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.90 E-value=0.11 Score=32.23 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCHH-HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 21013-77655641677267762131002769999999
Q gi|254780332|r 204 TGIQT-LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 204 TG~~~-LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
.||+. +|+++--+.+| ++.|-|+.|+|||++.--++
T Consensus 7 ~~~k~~~d~vsl~ip~G-itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 7 KGFKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred ECCCCCCCCEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 28700168769973898-28999999998899999999
No 328
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=95.89 E-value=0.038 Score=35.83 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=84.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC---CC-CCC
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011---00-012
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSS---KI-RRG 296 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~---~i-~~g 296 (504)
++||-|+||-|||..|+-+|.+-|..-+.. ...+-...+-+-.+.+.+..|+.++.|++=.+ .. ..+
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~---------~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~s 71 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQ---------KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHS 71 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHH---------HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 968861789987899999998636664224---------44010122026888999999999867754178543233455
Q ss_pred -CCCHHHH-------------HHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHH-----HCCC----CC--CCEEEE
Q ss_conf -1376889-------------9899999998627--807825899889999998864-----0224----44--746776
Q gi|254780332|r 297 -ELTRPDY-------------EKIVACSQVMQKL--PLYIDQTGGISMSQLATRARR-----LKRQ----RG--LDLLIV 349 (504)
Q Consensus 297 -~l~~~e~-------------~~i~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~-----~~~~----~g--i~~vvI 349 (504)
+++...| +.+.......... .++...-+--|++++....-. +... .. .-+|||
T Consensus 72 srfnh~~~~ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~ 151 (424)
T TIGR01587 72 SRFNHLASSIKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIF 151 (424)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 22678999999877630478279999998522421210131788534122000000553445205688887777676562
Q ss_pred CCHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCEEEEE-ECCCC
Q ss_conf 7135325664432113788999-99999999988279199977-13822
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITG-ITMALKALAKELNIPIIALS-QLSRQ 396 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~-is~~lK~lA~e~~ipvi~ls-QLnR~ 396 (504)
|=+|.+..... +. |-..|+.++.+.++|+|++| =|.|+
T Consensus 152 DE~h~y~~~~~---------~~~~l~~L~~~~~~~~~~~~lMsATlP~~ 191 (424)
T TIGR01587 152 DEVHAYEEYTL---------ALTILAALEVLKIDNDVKILLMSATLPRE 191 (424)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 53677764255---------55699999999987389889984056757
No 329
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.89 E-value=0.063 Score=34.12 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958---521799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~~ 285 (504)
|+.+--=+.+|+.+.|-|++|.|||+|+.-++. .... ....|.+--. +++.+++..+ ++..
T Consensus 37 L~~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~g-l~~p--------------~~G~I~idg~di~~~~~~~lr~~-i~~v 100 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR-MVDI--------------FDGKIVIDGIDISKLPLHTLRSR-LSII 100 (257)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHHH-CCCC--------------CCCEEEECCEEHHHCCHHHHHHH-EEEE
T ss_conf 105389987999999999999819999999960-5667--------------88889999899687999999750-5799
Q ss_pred HHHC---C----CCCCC-CCCCHHHHHHHH---HHHHHHHHCC----EEEECC-CCCCHHHH--HHHHHHHCCCCCCCEE
Q ss_conf 7410---1----10001-213768899899---9999986278----078258-99889999--9988640224447467
Q gi|254780332|r 286 TEVP---S----SKIRR-GELTRPDYEKIV---ACSQVMQKLP----LYIDQT-GGISMSQL--ATRARRLKRQRGLDLL 347 (504)
Q Consensus 286 s~I~---~----~~i~~-g~l~~~e~~~i~---~a~~~l~~~~----l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~v 347 (504)
.+=| . ..|.. ...++++..+.. .....+..+| -.+.+. ..+|-.|- .+.+|.+.+ +.+++
T Consensus 101 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~l~~~g~~LSgGQrQri~lARAll~--~~~il 178 (257)
T cd03288 101 LQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR--KSSIL 178 (257)
T ss_pred ECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEE
T ss_conf 4567343613554137566768999999999962379997375898517468768369999999999999955--99999
Q ss_pred EECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 76713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 348 IVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 348 vIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
+.| .+...- +... + ..|-..++.+. -+..||..++ | + ..+.+ ||.|++|.
T Consensus 179 iLD-----Epts~L-D~~t-e-~~i~~~l~~~~--~~~TvI~ItH-------r------l------~~~~~-~D~Iivl~ 228 (257)
T cd03288 179 IMD-----EATASI-DMAT-E-NILQKVVMTAF--ADRTVVTIAH-------R------V------STILD-ADLVLVLS 228 (257)
T ss_pred EEE-----CCCCCC-CHHH-H-HHHHHHHHHHC--CCCEEEEEEC-------C------H------HHHHH-CCEEEEEE
T ss_conf 995-----876678-9999-9-99999999974--9999999923-------8------9------89985-99999998
No 330
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.88 E-value=0.022 Score=37.64 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
...||.+---+++|+.+.+.|+.|.|||+++--++
T Consensus 13 ~~aL~~vsl~i~~Gei~~lvG~nGaGKSTl~~~i~ 47 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99885548898799899999889989999999995
No 331
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.86 E-value=0.074 Score=33.59 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=28.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 677621310027699999999998510111233333212479758999585
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
|+|+.|-||.|||++|-.++..... .|..|.+.+.+
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~---------------~~~~~i~~~~d 36 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSE---------------KNIDNIILGTD 36 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------HCCCEEEECCC
T ss_conf 9789678999899999999999998---------------29965996552
No 332
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.15 Score=31.16 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCEEEEEEC------CCCHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332-1247975899958------52179998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY-KTINGGIVGFYSL------EMSSEQLA 278 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~-~~~~g~~Vl~fSl------EMs~~el~ 278 (504)
...|+.+.--+.+|+++-+.|+-|.|||++.--+ ...-............. .......+.|+.- .|+..|..
T Consensus 13 ~~al~~vs~~v~~Gei~gllG~NGaGKTTll~~i-~Gl~~p~~G~i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMI-LGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHH
T ss_conf 9997542678879959999989998499999999-600266899899999868844360199964766679999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE--EECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECCHH
Q ss_conf 78999987410110001213768899899999998627807--8258-998899999--988640224447467767135
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY--IDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLq 353 (504)
++.+...+++. .+..+++.+..+. ..|. .+.. ..+|-.+-+ +.+|.+. +++++++.|
T Consensus 92 -~~~~~l~g~~~---------~~~~~~~~~~l~~---~~L~~~~~~~~~~LSgG~kqrv~la~al~--~~p~lllLD--- 153 (210)
T cd03269 92 -VYLAQLKGLKK---------EEARRRIDEWLER---LELSEYANKRVEELSKGNQQKVQFIAAVI--HDPELLILD--- 153 (210)
T ss_pred -HHHHHHCCCCH---------HHHHHHHHHHHHH---CCCCHHHCCHHHHCCHHHHHHHHHHHHHH--CCCCEEEEE---
T ss_conf -99999749999---------9999999999998---69970548805778998999999999995--799899992---
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 354 LMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 354 li~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|.. .-+. .....+..-|+.++.+ +..|+..|+. =..+|.-||-|++++.
T Consensus 154 --EPt~-gLDp--~~~~~i~~~i~~~~~~-g~til~ssH~-------------------l~e~~~~~d~i~vl~~ 203 (210)
T cd03269 154 --EPFS-GLDP--VNVELLKDVIRELARA-GKTVILSTHQ-------------------MELVEELCDRVLLLNK 203 (210)
T ss_pred --CCCC-CCCH--HHHHHHHHHHHHHHHC-CCEEEEECCC-------------------HHHHHHHCCEEEEEEC
T ss_conf --8866-7999--9999999999999968-9899998884-------------------8999996999999989
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=95.86 E-value=0.014 Score=39.08 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 430134336778999998741123664432101377655641677267762131002769999999999
Q gi|254780332|r 175 FHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
..++.+++-..+..+-+...+.... +-+.-|-.+=|=++||+|+||-||||.|+|||...+|-+.
T Consensus 48 ~~T~~N~~~~~~~~~~r~~~~~~~~----~~~~ILk~~~gl~~PGEl~vVLGrPGaGCsTlLk~ia~~t 112 (1466)
T TIGR00956 48 QSTLPNILLKILTEGFRKLKKEKDT----KTFDILKPMDGLIKPGELTVVLGRPGAGCSTLLKTIASKT 112 (1466)
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCC----CEEEECCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHE
T ss_conf 0436568999999999875301355----5043304701002676179972489973566555653200
No 334
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.092 Score=32.89 Aligned_cols=170 Identities=22% Similarity=0.263 Sum_probs=87.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH------------
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217------------
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS------------ 274 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~------------ 274 (504)
+-|+.+---+.+|+..-|.|.+|+|||+++.-+|-=. +. .+| .|.|.--++..
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p-------------~~G-~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KP-------------SSG-SILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred HHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC-------------CCC-EEEECCCCCCCCCCCHHHCCCEE
T ss_conf 4414325996489789998489898889999995656-78-------------886-28988840576653033304506
Q ss_pred ------------HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHHHH--HHHHHHC
Q ss_conf ------------99987899998741011000121376889989999999862780782589-98899999--9886402
Q gi|254780332|r 275 ------------EQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQLA--TRARRLK 339 (504)
Q Consensus 275 ------------~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~--~~~r~~~ 339 (504)
.+-+.++++---. .+.+.+.+ .++.++...+.=-+=|.+..| -+|=.|.. +.+|.+.
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~Epl~-------~~~~~~~~-~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSEPLR-------PHGLSKSQ-QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHC-------CCCCCHHH-HHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHHHC
T ss_conf 9951872246841019899742430-------37753789-999999998499989985394212816899999999863
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 24447467767135325664432113788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
-.+++++.| .+.+. -+-..| ++|-.-|..+.++++...+..|+ +.+-++.-
T Consensus 158 --~~PklLIlD-----EptSa-LD~siQ--a~IlnlL~~l~~~~~lt~l~IsH-------------------dl~~v~~~ 208 (252)
T COG1124 158 --PEPKLLILD-----EPTSA-LDVSVQ--AQILNLLLELKKERGLTYLFISH-------------------DLALVEHM 208 (252)
T ss_pred --CCCCEEEEC-----CCHHH-HCHHHH--HHHHHHHHHHHHHCCCEEEEEEC-------------------CHHHHHHH
T ss_conf --688879953-----82344-158899--99999999999861945999967-------------------29999988
Q ss_pred CCEEEEEEC
Q ss_conf 387889725
Q gi|254780332|r 420 ADVVLFVIR 428 (504)
Q Consensus 420 AD~v~~l~R 428 (504)
||-|+.+++
T Consensus 209 cdRi~Vm~~ 217 (252)
T COG1124 209 CDRIAVMDN 217 (252)
T ss_pred HHHEEEEEC
T ss_conf 535254007
No 335
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.83 E-value=0.1 Score=32.52 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=78.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
.|+.+.--+.+|+.+.|-|+.|+|||+|+--++-- -..... ....+|.++. +++.+++. +.++...+
T Consensus 23 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~-~~p~~G-------~I~idg~di~----~~~~~~~r-~~i~~v~Q 89 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-LEAEEG-------KIEIDGIDIS----TIPLEDLR-SSLTIIPQ 89 (207)
T ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCC-------EEEECCEECC----CCCHHHHH-HHCEEEEC
T ss_conf 24025889869999999999998799999999987-288887-------8999999954----07999999-51537703
Q ss_pred HC---CCCCCC-----CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 10---110001-----21376889989999999862780782589988999--999886402244474677671353256
Q gi|254780332|r 288 VP---SSKIRR-----GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 288 I~---~~~i~~-----g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
-| ...++. +..+++ .+..+.+ +.+. ...+|-.+ -.+.+|.+.+ +.++++.| .+
T Consensus 90 ~~~lf~~ti~~Nl~~~~~~~~~---~i~~~l~-~~~~------g~~LSgGqkQrl~iARal~~--~p~ililD-----Ep 152 (207)
T cd03369 90 DPTLFSGTIRSNLDPFDEYSDE---EIYGALR-VSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLD-----EA 152 (207)
T ss_pred CCEECCCCHHHHCCCCCCCCHH---HHHHHHH-HCCC------CCCCCHHHHHHHHHHHHHHC--CCCEEEEE-----CC
T ss_conf 5633275499873803335899---9999986-0478------88869899999999999970--89999981-----63
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
...- +... -..|.+.++.+++ +..||..++ .++ .+ ..+|-|+.|+.
T Consensus 153 ts~L-D~~~--~~~i~~~i~~~~~--~~Tvi~itH-------------~l~------~~-~~~D~Iivl~~ 198 (207)
T cd03369 153 TASI-DYAT--DALIQKTIREEFT--NSTILTIAH-------------RLR------TI-IDYDKILVMDA 198 (207)
T ss_pred CCCC-CHHH--HHHHHHHHHHHCC--CCEEEEEEC-------------CHH------HH-HHCCEEEEEEC
T ss_conf 4448-9899--9999999999759--999999907-------------999------99-85999999989
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.83 E-value=0.19 Score=30.41 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC-C----CCCCCCCCCC--EEEEEECCC
Q ss_conf 210137765564167----7267762131002769999999999851011123-3----3332124797--589995852
Q gi|254780332|r 204 TGIQTLDKQMGGLQR----SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQ-T----DGSYKTINGG--IVGFYSLEM 272 (504)
Q Consensus 204 TG~~~LD~~~gGl~~----G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~-~----~~~~~~~~g~--~Vl~fSlEM 272 (504)
.|=..|=+++.|..| |++.+.+.+.+.|++...+. .++......... . ........|. .+.++ ...
T Consensus 297 sGKSTLl~~l~G~~p~~~~g~i~l~g~~~~~g~~~~~~~--~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (490)
T PRK10938 297 AGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK--KHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIY-QAV 373 (490)
T ss_pred CCHHHHHHHHHCCCCCCCCCEEEEECEECCCCCCHHHHH--CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHH-CCC
T ss_conf 879999999808897676761898251247766378886--05078624223355412309999975433210011-038
Q ss_pred CH--HHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCH---HHHHHHHHHHCCCCC
Q ss_conf 17--9998789999874101100012--13768899899999998627807825899--889---999998864022444
Q gi|254780332|r 273 SS--EQLATRIISEQTEVPSSKIRRG--ELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISM---SQLATRARRLKRQRG 343 (504)
Q Consensus 273 s~--~el~~R~is~~s~I~~~~i~~g--~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti---~~I~~~~r~~~~~~g 343 (504)
+. .+.+.+++.. -+++.....++ .|+-.+..++.-|.--..+-++.|-|.|. +.+ .+|...++++..+.+
T Consensus 374 ~~~~~~~~~~~l~~-~~l~~~~~~~p~~~LSGGqqqrv~lAr~L~~~P~vLiLDEPT~gLD~~~~~~i~~ll~~l~~~g~ 452 (490)
T PRK10938 374 SDRQQKLAQQWLDI-LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE 452 (490)
T ss_pred CHHHHHHHHHHHHH-CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 68999999999997-69983570595231999999999999999719998999687547699999999999999997799
Q ss_pred CCEEEECC
Q ss_conf 74677671
Q gi|254780332|r 344 LDLLIVDY 351 (504)
Q Consensus 344 i~~vvIDY 351 (504)
.-+|||=|
T Consensus 453 ~~il~vSH 460 (490)
T PRK10938 453 TQLLFVSH 460 (490)
T ss_pred CEEEEECC
T ss_conf 29999748
No 337
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.82 E-value=0.2 Score=30.39 Aligned_cols=152 Identities=21% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217999878999987410110001213
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGEL 298 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l 298 (504)
|-++.|-|...+|||+||.++|... +.+|.|+..=.+ +
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~~------------------~~~~~YiAT~~~------------------------~ 38 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQS------------------GLQVLYIATAQP------------------------L 38 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC------------------CCCEEEEECCCC------------------------C
T ss_conf 9899997987634899999999856------------------998299975888------------------------8
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 76889989999999862780782589988999999886402244474677671353256644321137889999999999
Q gi|254780332|r 299 TRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKA 378 (504)
Q Consensus 299 ~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~ 378 (504)
+++..+++.....+ ....+.-.+.| ..+.+... +. ..+-++|.||-|.+.-.+--... ....+......|-.
T Consensus 39 D~Em~~RI~~Hr~~-R~~~w~TiE~p-~~l~~~l~---~~--~~~~~~vLlDclt~wl~N~l~~~-~~~~~~~~~~~ll~ 110 (170)
T PRK05800 39 DDEMAARIAHHRQR-RPAHWQTVEEP-LDLAELLR---AD--AAPGRCVLVDCLTTWVTNLLFED-GEEAIAAEIEALLA 110 (170)
T ss_pred CHHHHHHHHHHHHC-CCCCCEEEECC-CCHHHHHH---HH--CCCCCEEEEHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_conf 87899999999973-78995799646-67899998---74--57788687226789999987502-36679999999999
Q ss_pred HHHHHCCCEEEEEE-CCCCCCCCCCCCCC---CCCCC-CCCHH----HHHCCEEEEE
Q ss_conf 99882791999771-38220168999984---01014-32422----3313878897
Q gi|254780332|r 379 LAKELNIPIIALSQ-LSRQVENRDNKRPQ---LSDLR-ESGSI----EQDADVVLFV 426 (504)
Q Consensus 379 lA~e~~ipvi~lsQ-LnR~~e~r~~krP~---lsDLr-~Sg~I----EqdAD~v~~l 426 (504)
..+....++|++|- +.-++ -|. --..| ..|.+ -+-||-|.++
T Consensus 111 ~l~~~~~~~ViVsnEVG~Gi------vp~~~~~R~frd~lG~lNq~lA~~Ad~V~lv 161 (170)
T PRK05800 111 ALQRLPAKIILVSNEVGMGI------VPEYRLGRRFRDIAGRLNQQLAAAADEVYLV 161 (170)
T ss_pred HHHHCCCCEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99827997899977867778------8998799999999999999999877988999
No 338
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.81 E-value=0.15 Score=31.27 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=31.8
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 776213100276999999999985101112333332124797589995852179998789999
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE 284 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~ 284 (504)
..|-|.+|.|||-|+.-++..+.... .+.+|+|.|-|- .+..++..
T Consensus 148 LfIyG~~GlGKTHLl~AIgn~~~~~~-------------p~~~v~Y~tae~----F~~~~v~a 193 (447)
T PRK00149 148 LFIYGGVGLGKTHLLHAIGNYILEKN-------------PNAKVVYVSSEK----FTNDFVKA 193 (447)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-------------CCCEEEEEEHHH----HHHHHHHH
T ss_conf 58977998878899999999999858-------------997289954999----99999999
No 339
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC. A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=95.80 E-value=0.015 Score=38.97 Aligned_cols=173 Identities=20% Similarity=0.256 Sum_probs=110.6
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
++|.+..+|++. ||+.=|.-++|.|-.|.|||.|++++..+-.... ..|.+|.++|-++..+..-
T Consensus 3 ~~t~ieGfdd~~~GGlP~Gr~tl~sGtsGtGkt~~~~~fl~~Gi~~f--------------d~P~~fvtfee~P~di~~n 68 (484)
T TIGR02655 3 LRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSLQFLYNGIVHF--------------DEPGVFVTFEESPKDIIKN 68 (484)
T ss_pred CCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH--------------CCCEEEEEECCCHHHHHHH
T ss_conf 43210351122048834354036623676434777777888756540--------------7870599863785899977
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CC---------CCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 9999874101100012137688998999999986278078258-99---------8899999988640224447467767
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GG---------ISMSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~---------~ti~~I~~~~r~~~~~~gi~~vvID 350 (504)
..+. | | +..+-+.+.+|||-|. |+ ..+..+..++....+++.-+-|-||
T Consensus 69 a~~f--G---------------W----~l~~l~~~~klfildasPdP~Gq~~~G~fdls~lier~~yai~ky~a~rv~id 127 (484)
T TIGR02655 69 AASF--G---------------W----DLQKLVDEGKLFILDASPDPEGQDVVGEFDLSALIERINYAIRKYKAKRVSID 127 (484)
T ss_pred HHHH--C---------------C----HHHHHHHCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEHH
T ss_conf 7750--4---------------0----07888515967999668899755144031078999999999876410000034
Q ss_pred CHHHCCCCCCCCCHHHHHHHHHHHHHHHH-H--HHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 13532566443211378899999999999-9--8827919997713822016899998401014324223313878897
Q gi|254780332|r 351 YIQLMTTSKKIEENRVLEITGITMALKAL-A--KELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 351 YLqli~~~~~~~~~r~~~i~~is~~lK~l-A--~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
-+.-+- ..|.++.-+-|++=.| | |++++.-|... .|--|. -|. ..-|-=|--+|.|+.+
T Consensus 128 s~t~vf-------qqy~a~~vvrre~frl~arlk~~~~ttv~tt--er~~ey----GP~----a~yGveefvsdnvvi~ 189 (484)
T TIGR02655 128 SVTAVF-------QQYDAVSVVRREIFRLVARLKQIGVTTVMTT--ERIDEY----GPV----ARYGVEEFVSDNVVIL 189 (484)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCHHC----CCC----HHHCCHHHHCCCEEEE
T ss_conf 666567-------6421256788999999998865150368853--210003----750----1202022202655676
No 340
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.77 E-value=0.095 Score=32.78 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 3776556416772677621310027699999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAY 241 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~ 241 (504)
-|+.+--=+++|+++.|.|+.|.|||+|+--++-
T Consensus 21 vL~~isl~i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 21 ILKGINLSINAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 8856177887998999999999999999999727
No 341
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.77 E-value=0.11 Score=32.19 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=80.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHHHHH
Q ss_conf 7765564167726776213100276999999999985101112333332124797589995852---1799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~is~~ 285 (504)
|+.+.-=++||+.+.|.|++|.|||+++--++ .... .+...|.+-.-++ +...+ .+.++..
T Consensus 30 L~~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~-gl~~--------------p~~G~I~idg~~i~~~~~~~l-r~~i~~v 93 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQ--------------PQGGQVLLDGKPISQYEHKYL-HSKVSLV 93 (226)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCC--------------CCCCEEEECCEEHHHCCHHHH-HHCEEEE
T ss_conf 74538998299999999999984999999996-4546--------------788789999999344899999-7326999
Q ss_pred HHHCC-------CCCCCC--CCCHHHHHHHHHHHH------HHHHCC----EEEECC-CCCCHHH--HHHHHHHHCCCCC
Q ss_conf 74101-------100012--137688998999999------986278----078258-9988999--9998864022444
Q gi|254780332|r 286 TEVPS-------SKIRRG--ELTRPDYEKIVACSQ------VMQKLP----LYIDQT-GGISMSQ--LATRARRLKRQRG 343 (504)
Q Consensus 286 s~I~~-------~~i~~g--~l~~~e~~~i~~a~~------~l~~~~----l~I~d~-~~~ti~~--I~~~~r~~~~~~g 343 (504)
.+-|. ..|.-| ..+.+ ++.++.+ .+..+| -.+.+. ..+|-.+ -.+.+|.+. +.
T Consensus 94 ~Q~~~lf~~ti~eNi~~g~~~~~~~---~i~~~~~~~~~~~~i~~l~~gl~t~i~~~g~~LSgGqkQRialARal~--~~ 168 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFE---CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI--RN 168 (226)
T ss_pred ECCCEECCCCHHHHHHCCCCCCCHH---HHHHHHHHHCHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--CC
T ss_conf 2479576773566663278999999---999999996614677626366640616848876999999999999997--59
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
.++++.| .+.+.- +... -..|-..|+.+.+ +..||..++ | | ..++ .||-|
T Consensus 169 p~ililD-----EptSaL-D~~t--e~~i~~~l~~~~~--~~Tvi~ItH-----------~-----l---~~~~-~~DrI 218 (226)
T cd03248 169 PQVLILD-----EATSAL-DAES--EQQVQQALYDWPE--RRTVLVIAH-----------R-----L---STVE-RADQI 218 (226)
T ss_pred CCEEEEE-----CCCCCC-CHHH--HHHHHHHHHHHCC--CCEEEEEEC-----------C-----H---HHHH-HCCEE
T ss_conf 9999997-----976688-9999--9999999998669--999999937-----------9-----9---9998-49999
Q ss_pred EEEE
Q ss_conf 8972
Q gi|254780332|r 424 LFVI 427 (504)
Q Consensus 424 ~~l~ 427 (504)
++|.
T Consensus 219 ivme 222 (226)
T cd03248 219 LVLD 222 (226)
T ss_pred EEEE
T ss_conf 9993
No 342
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=95.76 E-value=0.2 Score=30.28 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--HHHHHHH
Q ss_conf 32101377655641677267762131002769999999999851011123333321247975899958521--7999878
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS--SEQLATR 280 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs--~~el~~R 280 (504)
+.--..++....+..++.++++-|.||.|||.+++-+|.+..... ....+-+|+.+=|. .+++..|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------------~~~~~r~i~vlP~~t~ie~~~~r 265 (733)
T COG1203 198 ELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------------IKLKSRVIYVLPFRTIIEDMYRR 265 (733)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC------------CCCCCEEEEECCHHHHHHHHHHH
T ss_conf 556799999873225575189991688871999999999975311------------35456289965589999999999
Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCEEEEC--------CCCCCHHHHHH-HHHHHCCC----CCCCE
Q ss_conf 9999874101100-01213768899899999998627807825--------89988999999-88640224----44746
Q gi|254780332|r 281 IISEQTEVPSSKI-RRGELTRPDYEKIVACSQVMQKLPLYIDQ--------TGGISMSQLAT-RARRLKRQ----RGLDL 346 (504)
Q Consensus 281 ~is~~s~I~~~~i-~~g~l~~~e~~~i~~a~~~l~~~~l~I~d--------~~~~ti~~I~~-~~r~~~~~----~gi~~ 346 (504)
+......-..... ..+.. ...+ ...........++..| .+..++.++.. .....+.. -...+
T Consensus 266 ~~~~~~~~~~~~~~~h~~~-~~~~---~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 266 AKEIFGLFSVIGKSLHSSS-KEPL---LLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred HHHHHCCCCCCCCCCCCCC-HHHH---HHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 9875123554331001310-2556---51701002258881242236204522206999855740466725778876467
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7767135325664432113788999999999999882791999771
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
+|+|=.|++.... .. +.+.. +=....+.|+|||+.|=
T Consensus 342 vIlDE~h~~~~~~---~~-----~~l~~-~i~~l~~~g~~ill~SA 378 (733)
T COG1203 342 VILDEVHLYADET---ML-----AALLA-LLEALAEAGVPVLLMSA 378 (733)
T ss_pred EEEECHHHCCCCC---HH-----HHHHH-HHHHHHHCCCCEEEEEC
T ss_conf 7874275416543---08-----99999-99999968997899927
No 343
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.76 E-value=0.17 Score=30.92 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=73.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC---CCC
Q ss_conf 77621310027699999999998510111233333212479758999585217999878999987410110001---213
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR---GEL 298 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~---g~l 298 (504)
+.|-|.-|+|||+.+.|+|...|. .|++|+.+-+.-... ..|.+ ..+.+...+.+ ...
T Consensus 4 iaiyGKGGVGKSTtt~NLaAALA~---------------~GkkVl~IgcDPk~d--sT~~L--~gg~~~~tvld~l~~~~ 64 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTVAGLAE---------------MGKKVMVVGCDPKAD--STRLL--LGGLQQKTVLDTLREEG 64 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEECCCCCCC--HHHHH--HCCCCCCCHHHHHHHCC
T ss_conf 999799855476789999999997---------------899799989898453--66787--38998997899998628
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEEC--------CCCCCHHHHHHHHHHH---CCCCCCCEEEECCHHHCCCCCCC------
Q ss_conf 768899899999998627807825--------8998899999988640---22444746776713532566443------
Q gi|254780332|r 299 TRPDYEKIVACSQVMQKLPLYIDQ--------TGGISMSQLATRARRL---KRQRGLDLLIVDYIQLMTTSKKI------ 361 (504)
Q Consensus 299 ~~~e~~~i~~a~~~l~~~~l~I~d--------~~~~ti~~I~~~~r~~---~~~~gi~~vvIDYLqli~~~~~~------ 361 (504)
.+- .+......-...-+.+.- +.+..+-.-....+++ ..++.+|+|++|-|..+...+-.
T Consensus 65 ~~~---~ledvi~~g~~gi~cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcggFa~pir~~ 141 (274)
T PRK13235 65 EDV---ELEDIIKEGYGNTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDG 141 (274)
T ss_pred CCC---CHHHHEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 776---77894431789818986899875667576315258999988177543357768998137853124511551006
Q ss_pred -C-------CHHHH---HHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf -2-------11378---89999999999998827919997
Q gi|254780332|r 362 -E-------ENRVL---EITGITMALKALAKELNIPIIAL 390 (504)
Q Consensus 362 -~-------~~r~~---~i~~is~~lK~lA~e~~ipvi~l 390 (504)
. .+-+. ...+|.+.++..+...++.+-.+
T Consensus 142 ~A~eV~IVts~E~~AL~aannI~k~i~~~~~~~~~~l~Gi 181 (274)
T PRK13235 142 KAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGL 181 (274)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5878999916836899999999999999974379548899
No 344
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=95.74 E-value=0.062 Score=34.20 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=79.5
Q ss_pred CCCCEEE-EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6772677-621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 217 QRSDLII-IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 217 ~~G~l~V-iaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
++|.|-| +|+-||+|||--||+=|..... +|..|++=-.|--...=...++.-.--||...+..
T Consensus 2 ~rG~LkIylG~apGVGKTy~ML~eA~~l~~---------------~G~DVViG~vEthgR~eT~~l~~gLe~iP~~~~~y 66 (211)
T pfam02702 2 RRGKLKIFLGAAPGVGKTYAMLSEAHELLE---------------RGVDVVIGYVETHGRAETAALLEGLEVIPRKEIEY 66 (211)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEECCCCCHHHHHHHCCCCCCCCEEEEE
T ss_conf 976168985359987789999999999997---------------89956999953799789999976876688712536
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21376889989999999862780782589988999999886402244474677671353256644321137889999999
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMA 375 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~ 375 (504)
+. .. -..+.++.|. ...+.+|+||=|---..++.....|+|.|.++-.
T Consensus 67 ~g--------------------~~---~~E~Dldail--------~R~P~vvLVDELAHtN~pgsr~~KR~qDVeeLL~- 114 (211)
T pfam02702 67 RG--------------------VT---LEEMDLDAIL--------ARKPQLVLVDELAHTNAPGSRHEKRWQDVEELLD- 114 (211)
T ss_pred CC--------------------EE---CCCCCHHHHH--------HCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH-
T ss_conf 88--------------------55---3507999998--------5399989984455679998888754774999998-
Q ss_pred HHHHHHHHCCCEEEEEE------CCCCCCCCCCC--CCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 99999882791999771------38220168999--984010143242233138788972
Q gi|254780332|r 376 LKALAKELNIPIIALSQ------LSRQVENRDNK--RPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 376 lK~lA~e~~ipvi~lsQ------LnR~~e~r~~k--rP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
-+|-|+..-- ||--+++=.+- |.++ ...+-..||-|.++-
T Consensus 115 -------aGIdV~TTlNvQHlESlnd~V~~iTgv~vrEtV-----PD~vl~~Adei~lVD 162 (211)
T pfam02702 115 -------AGIDVYTTVNVQHLESLNDVVERITGVRVRETV-----PDSVLDEADEVVLVD 162 (211)
T ss_pred -------CCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCC-----CHHHHHHCCEEEECC
T ss_conf -------799088601477665267899972298547718-----889995358279816
No 345
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.74 E-value=0.17 Score=30.81 Aligned_cols=177 Identities=15% Similarity=0.218 Sum_probs=80.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE--------------EEEE----
Q ss_conf 1377655641677267762131002769999999999851011123333321247975--------------8999----
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGI--------------VGFY---- 268 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~--------------Vl~f---- 268 (504)
..|+++---+.+|+.+.|-|+.|+|||+++--++-=.......+ ..-.....|.. +.|.
T Consensus 24 ~aL~~vsl~i~~Ge~~~liG~nGaGKSTLlk~i~gl~~l~p~~~---~~G~I~~~G~~i~~~~~~~~~~r~~ig~v~Q~~ 100 (257)
T PRK10744 24 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMYELYPEQR---AEGEILLDGDNILTNSQDIALLRAKVGMVFQKP 100 (257)
T ss_pred EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC---CCCEEEECCEECCCCHHHHHHHHHCEEEEEECC
T ss_conf 67814289988998999999999819999999987651278887---540596899265576154999872068994367
Q ss_pred -ECCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHH-HHHHHHHHHHHHCCE---EEECCC-CCCHH--HHHHHHHHHC
Q ss_conf -58521799987899998741011-000121376889-989999999862780---782589-98899--9999886402
Q gi|254780332|r 269 -SLEMSSEQLATRIISEQTEVPSS-KIRRGELTRPDY-EKIVACSQVMQKLPL---YIDQTG-GISMS--QLATRARRLK 339 (504)
Q Consensus 269 -SlEMs~~el~~R~is~~s~I~~~-~i~~g~l~~~e~-~~i~~a~~~l~~~~l---~I~d~~-~~ti~--~I~~~~r~~~ 339 (504)
.+.|+..+- |.+. ++. ..++..+. +++..+.....-++. .+...+ .+|=. +-.+.+|.+.
T Consensus 101 ~~f~~tv~~n----------v~~~~~~~-~~~~~~~~~~rv~~~l~~~~l~~~~~~~~~~~~~~LSGGqkQRvaiArAL~ 169 (257)
T PRK10744 101 TPFPMSIYDN----------IAFGVRLF-EKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIA 169 (257)
T ss_pred CCCCCCHHHH----------HHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5577609999----------87757763-358888999999999998325310134215774558988989999987775
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 24447467767135325664432113788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
.++++++.| .+...- +. ..-..|..-++.|.++ ..||..++ |+ ..+.+-
T Consensus 170 --~~P~vLllD-----EPts~L-D~--~~~~~i~~ll~~l~~~--~Tvi~itH----------------dl---~~a~~~ 218 (257)
T PRK10744 170 --IRPEVLLLD-----EPCSAL-DP--ISTGRIEELITELKQD--YTVVIVTH----------------NM---QQAARC 218 (257)
T ss_pred --CCCCEEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC--CEEEEEEE----------------CH---HHHHHH
T ss_conf --199988877-----885536-99--9999999999999719--96999961----------------99---999986
Q ss_pred CCEEEEEEC
Q ss_conf 387889725
Q gi|254780332|r 420 ADVVLFVIR 428 (504)
Q Consensus 420 AD~v~~l~R 428 (504)
||-|++|+.
T Consensus 219 ~Dri~vm~~ 227 (257)
T PRK10744 219 SDHTAFMYL 227 (257)
T ss_pred CCEEEEEEC
T ss_conf 999999979
No 346
>KOG0989 consensus
Probab=95.67 E-value=0.081 Score=33.28 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
|-..+.+ +-+-.+++-|.||-|||+.++-+|...
T Consensus 48 L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989 48 LKNALLR-RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999860-688607866899986768999999985
No 347
>PRK07667 uridine kinase; Provisional
Probab=95.66 E-value=0.026 Score=37.09 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCEEE-EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 72677-62131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 219 SDLII-IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 219 G~l~V-iaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
+.++| |+|.+|.|||+||-.++..... .|.+|..++...-...-..|.-. +-+.. ..-.
T Consensus 13 ~r~iIgIaG~sgSGKTTla~~L~~~l~~---------------~~~~v~v~~~Dd~~~~~~~r~~~---~~~~~--~~~~ 72 (190)
T PRK07667 13 NRFILGIDGLSRSGKTTFVANLKENMKQ---------------EGIPFHIFHIDDHIVERNKRYHT---GFEEW--YEYY 72 (190)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCCCHHHHHCC---CCCCH--HHCC
T ss_conf 8699997798978899999999999866---------------59837999666242658887305---98540--0125
Q ss_pred CCHHHHHHHHH-HHHHHHHC-CEE--EECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 37688998999-99998627-807--825899889999998864022444746776713532
Q gi|254780332|r 298 LTRPDYEKIVA-CSQVMQKL-PLY--IDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 298 l~~~e~~~i~~-a~~~l~~~-~l~--I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
...-+++.+.+ ....|++. ++. ++|...-+.. . ....-...++|||+-+-|.
T Consensus 73 ~~~~D~~~L~~~ll~~Lk~g~~i~~p~Yd~~t~~~~---~---~~~~v~p~~VIIvEGI~l~ 128 (190)
T PRK07667 73 YLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCE---M---KKVQIPIVGVIVIEGVFLQ 128 (190)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---C---CEEECCCCCEEEEECHHHC
T ss_conf 431259999999999843899767524602336677---6---4276699988999504438
No 348
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=95.66 E-value=0.22 Score=29.95 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=69.0
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 76213100276999999999985101112333332124797589995852179998789999874101100012137688
Q gi|254780332|r 223 IIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPD 302 (504)
Q Consensus 223 Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e 302 (504)
.|-|...+|||+||.++|... +.++.|+..= .-.|+|
T Consensus 2 LVtGG~rSGKS~~AE~la~~~------------------~~~~~YiAT~-------------------------~~~D~E 38 (166)
T pfam02283 2 LVTGGARSGKSRFAERLALAS------------------GGPVVYIATA-------------------------QAFDDE 38 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHC------------------CCCEEEEECC-------------------------CCCCHH
T ss_conf 886887733899999999855------------------9981999769-------------------------888889
Q ss_pred H-HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHH-HHHHHHHHHHH
Q ss_conf 9-989999999862780782589988999999886402244474677671353256644321137889-99999999999
Q gi|254780332|r 303 Y-EKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEI-TGITMALKALA 380 (504)
Q Consensus 303 ~-~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i-~~is~~lK~lA 380 (504)
| ++|.....+- ...+.-.+.| ..+.++ ++.. .+-+.|.||-|.+.-.+--........+ ..+.+-+..+
T Consensus 39 m~~RI~~Hr~~R-~~~w~tiE~~-~~l~~~---l~~~---~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~~ll~~l- 109 (166)
T pfam02283 39 MAERIARHRARR-PAGWTTIEEP-LDLAEA---LARL---PGGDVVLVDCLTLWLTNLLFAGDDEEDIEAEVDELLAAL- 109 (166)
T ss_pred HHHHHHHHHHCC-CCCCEEEECC-CCHHHH---HHHC---CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-
T ss_conf 999999999718-9996799774-459999---9846---989869997177899998762374778999999999999-
Q ss_pred HHHCCCEEEEEE-CCCCCCCCCCCCCCC---CCC-CCCCHH----HHHCCEEEEE
Q ss_conf 882791999771-382201689999840---101-432422----3313878897
Q gi|254780332|r 381 KELNIPIIALSQ-LSRQVENRDNKRPQL---SDL-RESGSI----EQDADVVLFV 426 (504)
Q Consensus 381 ~e~~ipvi~lsQ-LnR~~e~r~~krP~l---sDL-r~Sg~I----EqdAD~v~~l 426 (504)
+..+.++|++|- +-- +--|.- -.. +..|.+ -+.||-|.++
T Consensus 110 ~~~~~~~ViVsnEvG~------Givp~~~~~R~f~d~lG~lNq~lA~~ad~V~lv 158 (166)
T pfam02283 110 KARPAPVVLVSNEVGL------GIVPENALGRRFRDLLGRLNQRLAAAADEVYLV 158 (166)
T ss_pred HCCCCCEEEEECCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 7489979999767678------875898789999999999999999878988999
No 349
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.66 E-value=0.09 Score=32.96 Aligned_cols=175 Identities=18% Similarity=0.309 Sum_probs=89.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
-|+++.--++||+.+.|-|++|.||||++-=+. ..-..... .....|.++- +++.+++-. .++...+
T Consensus 356 vL~~is~~I~~Ge~vaIVG~SGsGKSTL~~LL~-rly~p~~G-------~I~idG~di~----~i~~~~lR~-~i~~V~Q 422 (593)
T PRK10790 356 VLKNINLSVPSRNFVALVGHTGSGKSTLASLLM-GYYPLTEG-------EIRLDGRPLS----SLSHSVLRQ-GVAMVQQ 422 (593)
T ss_pred HHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH-HHCCCCCC-------CCCCCCEECC----CCCHHHHHH-CCCCCCC
T ss_conf 142601044899789987999886899999999-85567899-------4165993244----246888863-1575166
Q ss_pred HC-------CCCCCCC-CCCHHHHHHHHH---HHHHHHHCC----EEEECC-CCCCHHH--HHHHHHHHCCCCCCCEEEE
Q ss_conf 10-------1100012-137688998999---999986278----078258-9988999--9998864022444746776
Q gi|254780332|r 288 VP-------SSKIRRG-ELTRPDYEKIVA---CSQVMQKLP----LYIDQT-GGISMSQ--LATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 288 I~-------~~~i~~g-~l~~~e~~~i~~---a~~~l~~~~----l~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvI 349 (504)
=| ..+|.-| ..++++..+..+ +.+.+.++| -.|.+. ..+|-.| -.+.+|.+. +++++++.
T Consensus 423 ~~~LF~gTI~eNi~~g~~~~~~~i~~a~~~a~l~~~i~~lp~G~dT~vge~G~~LSgGQrQRiaiARall--~~p~iliL 500 (593)
T PRK10790 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLSDGLYTPLGEQGNTLSVGQKQLLALARVLV--ETPQILIL 500 (593)
T ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 6514565299997760023679999999997789999857420104423876887999999999999995--59899998
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
| .+.+.- +...+ ..|.+.|+.+.+ +..+|..|+ +||-+ .+||.|+.|.
T Consensus 501 D-----EaTSaL-D~~tE--~~i~~~l~~~~~--~~T~i~IaH-------------Rlsti-------~~aD~I~vl~ 548 (593)
T PRK10790 501 D-----EATASI-DSGTE--QAIQQALAAIRE--HTTLVVIAH-------------RLSTI-------VEADTILVLH 548 (593)
T ss_pred E-----CCCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEECC-------------CHHHH-------HHCCEEEEEE
T ss_conf 3-----877788-99999--999999999728--998999707-------------89899-------9699999998
No 350
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=95.66 E-value=0.089 Score=32.99 Aligned_cols=166 Identities=20% Similarity=0.323 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH--H
Q ss_conf 43210137765564167726776213100276999999999985101112333332124797589995852179998--7
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA--T 279 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~--~ 279 (504)
.++|...|+++.==+.||+++-+.|++|-||||| |.+.+.+....+...+. .|..|. .|...++. .
T Consensus 11 Y~~~~~aL~~v~l~i~kG~F~FLtG~SGAGKttL-LKLl~~~~~P~~G~v~~-------~G~~~~----~l~~~~~P~LR 78 (215)
T TIGR02673 11 YPGGVEALHDVSLHIRKGEFLFLTGPSGAGKTTL-LKLLYGALTPSRGQVRV-------AGEDVS----RLRGRQLPLLR 78 (215)
T ss_pred CCCCCHHHCCCCEEECCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCCEEEE-------CCEECC----CCCCCCCHHHH
T ss_conf 7898511327644752774078872778617899-99998526987580888-------874046----67756431221
Q ss_pred H----------HHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCEEEECCC-CCCHH--HHHHHHHHHCCCC
Q ss_conf 8----------999987---4101100012137688998999999986-2780782589-98899--9999886402244
Q gi|254780332|r 280 R----------IISEQT---EVPSSKIRRGELTRPDYEKIVACSQVMQ-KLPLYIDQTG-GISMS--QLATRARRLKRQR 342 (504)
Q Consensus 280 R----------~is~~s---~I~~~~i~~g~l~~~e~~~i~~a~~~l~-~~~l~I~d~~-~~ti~--~I~~~~r~~~~~~ 342 (504)
| ++...| +|-+--.-.|.-..+=-.+|..+...+. +-+. +..| .+|=. |=.|.||.++ +
T Consensus 79 R~iGvvFQDf~LL~~rTv~eNVAl~L~V~G~~~~~I~~rV~~~L~~vGL~~K~--~~~P~~LSGGEQQRvaIARAiv--~ 154 (215)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKKREIQRRVEAALRLVGLEHKA--DAFPEQLSGGEQQRVAIARAIV--N 154 (215)
T ss_pred CCCCEEEECCCCCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH--HCCCCCCCCCHHHHHHHHHHHH--C
T ss_conf 31543784221101166134112101113888033678999999852863254--2572100472578888876530--4
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 47467767135325664432113788999999999999882791999771
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
.+.+++.| .|.++-...-. ..|.+=|+.+ -..|+.||..+.
T Consensus 155 ~P~lLLAD-----EPTGNLD~~~~---~~iL~ll~~~-n~~GtTV~vATH 195 (215)
T TIGR02673 155 SPELLLAD-----EPTGNLDPALS---ERILDLLKEL-NKRGTTVIVATH 195 (215)
T ss_pred CCCEEEEE-----CCCCCCCHHHH---HHHHHHHHHH-HHCCCEEEEECC
T ss_conf 89679877-----88999687678---9999999998-418987999807
No 351
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=95.65 E-value=0.19 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=19.1
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1677267762131002769999999999851
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
+.=|.|++|.|-+|+|||||...+-..++..
T Consensus 662 iPLG~~t~iTGVSGSGKSTLind~L~~~~~~ 692 (956)
T TIGR00630 662 IPLGLFTCITGVSGSGKSTLINDTLYPALAR 692 (956)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 4077179997445874577799999999999
No 352
>KOG0739 consensus
Probab=95.64 E-value=0.043 Score=35.36 Aligned_cols=127 Identities=24% Similarity=0.374 Sum_probs=71.8
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 43210137765564167726776213100276999999999985101112333332124797589995852179998789
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRI 281 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~ 281 (504)
+|--|+.| .+|+-+|-.=+.+-|.||-|||-||--+|..+- .-|||. |...++.+|
T Consensus 151 LPIKFPql--FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------------------STFFSv--SSSDLvSKW 206 (439)
T KOG0739 151 LPIKFPQL--FTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------------------STFFSV--SSSDLVSKW 206 (439)
T ss_pred ECCCCHHH--HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC--------------------CCEEEE--EHHHHHHHH
T ss_conf 00025354--158877542578867999757799999874147--------------------706873--017889987
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCC
Q ss_conf 99987410110001213768899899999998627807825899889999998864022444746776713532566443
Q gi|254780332|r 282 ISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKI 361 (504)
Q Consensus 282 is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~ 361 (504)
+ .+.| ++ + ..+-.|.|++.+.+||||-+..+.+++..
T Consensus 207 m----------------GESE--kL---------------------V----knLFemARe~kPSIIFiDEiDslcg~r~e 243 (439)
T KOG0739 207 M----------------GESE--KL---------------------V----KNLFEMARENKPSIIFIDEIDSLCGSRSE 243 (439)
T ss_pred H----------------CCHH--HH---------------------H----HHHHHHHHHCCCCEEEEEHHHHHCCCCCC
T ss_conf 3----------------2179--99---------------------9----99999987349947986344443268877
Q ss_pred CCHHHHHHHHHHHHHHH-----H---H---------HHHCCCEEEEEECCCCCCCCC
Q ss_conf 21137889999999999-----9---9---------882791999771382201689
Q gi|254780332|r 362 EENRVLEITGITMALKA-----L---A---------KELNIPIIALSQLSRQVENRD 401 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~-----l---A---------~e~~ipvi~lsQLnR~~e~r~ 401 (504)
+++ +-+|++|. | - --.|||.++=|-+-|-.|+|.
T Consensus 244 nEs------easRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRI 294 (439)
T KOG0739 244 NES------EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRI 294 (439)
T ss_pred CCH------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCE
T ss_conf 711------777777778887640666588864897237884367799998765023
No 353
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=95.63 E-value=0.16 Score=31.10 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEEEEECCC--CHHHHHHHHHH
Q ss_conf 3776556-416772677621310027699999999998510111233333212479-7589995852--17999878999
Q gi|254780332|r 208 TLDKQMG-GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING-GIVGFYSLEM--SSEQLATRIIS 283 (504)
Q Consensus 208 ~LD~~~g-Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g-~~Vl~fSlEM--s~~el~~R~is 283 (504)
.|-.++. |..|-++ +|-|.||.|||+.+..+...+-...... ..- ..|.|+-++- |.-+++.++.-
T Consensus 32 ~L~~~l~PG~~P~Ni-~iYGkTGtGKT~vt~~v~~~l~~~~~~~---------d~~D~~~~~~NC~~~~T~y~~~~~L~~ 101 (383)
T TIGR02928 32 ALRPILRPGSRPSNI-FIYGKTGTGKTAVTKYVMKELEEAAEDR---------DVRDVSTVYINCQILDTSYQVLVELAN 101 (383)
T ss_pred HHHHHHCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 988750674898725-8878889878899999999999986226---------997158999778546846999999999
Q ss_pred HH--HHHCCCCCCCCCCCHHHHHHHHHHHH-HHHH
Q ss_conf 98--74101100012137688998999999-9862
Q gi|254780332|r 284 EQ--TEVPSSKIRRGELTRPDYEKIVACSQ-VMQK 315 (504)
Q Consensus 284 ~~--s~I~~~~i~~g~l~~~e~~~i~~a~~-~l~~ 315 (504)
.. ++...+-=.+|--+++-|+++.+.+. +...
T Consensus 102 ~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~ 136 (383)
T TIGR02928 102 QLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGD 136 (383)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 85157788889887787899999999998320188
No 354
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.60 E-value=0.24 Score=29.78 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=33.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
+.|..+-||.|||+.+.|+|...|.. |++|+++-+.+..-.+
T Consensus 60 I~V~S~kgGvGKStva~nLA~alA~~---------------G~rVlliDaD~~gps~ 101 (265)
T COG0489 60 IAVTSGKGGVGKSTVAVNLAAALAQL---------------GKRVLLLDADLRGPSI 101 (265)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC---------------CCEEEEEECCCCCCCC
T ss_conf 99975899875689999999999963---------------9938999674669863
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.59 E-value=0.2 Score=30.24 Aligned_cols=124 Identities=17% Similarity=0.253 Sum_probs=64.8
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH--
Q ss_conf 776556416772677621310027699999999998510111233333212479758999585217999878999987--
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT-- 286 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s-- 286 (504)
+..+.-.+.+|+-+.|-|+-|.|||+|.--++-..... .....+.++..+.||..+.+.-..-..++-...
T Consensus 338 ~~~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~~~~-------~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~ 410 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-------SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEG 410 (530)
T ss_pred ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-------CCEEEECCCEEEEEEEEEHHHCCCCCCHHHHHHHH
T ss_conf 63726776589889998999877899999985213567-------72599579678999870031027667799999864
Q ss_pred ----------------HHCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCHHHHHHHHHHHC
Q ss_conf ----------------410110001--21376889989999999862780782589--988999999886402
Q gi|254780332|r 287 ----------------EVPSSKIRR--GELTRPDYEKIVACSQVMQKLPLYIDQTG--GISMSQLATRARRLK 339 (504)
Q Consensus 287 ----------------~I~~~~i~~--g~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti~~I~~~~r~~~ 339 (504)
+.+...... +.|+..|..|+.=|.--+.+-++.|-|.| .+.++.+.+....+.
T Consensus 411 ~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLlLDEPTNhLDi~s~eaLe~aL~ 483 (530)
T COG0488 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL 483 (530)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 6543289999999984998679639522258779999999998566997899728987679889999999998
No 356
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=95.58 E-value=0.24 Score=29.75 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCHHHCCCH
Q ss_conf 899999944296663798
Q gi|254780332|r 42 EAFYRVSDFLKPLHFFEA 59 (504)
Q Consensus 42 ~~~~~v~~~L~pedFy~~ 59 (504)
+.+-.+.+++...|=|.+
T Consensus 388 e~irS~levi~~NW~ye~ 405 (1192)
T TIGR02773 388 EFIRSILEVIQKNWRYEA 405 (1192)
T ss_pred HHHHHHHHHHHHCCCCCH
T ss_conf 688999999761588126
No 357
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.58 E-value=0.13 Score=31.82 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=86.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC------
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410------
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVP------ 289 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~------ 289 (504)
++||+.+.|-|++|.||||++-=++.-. ... .-.....|.++- +++.+++. +.++...+=+
T Consensus 364 i~~Ge~vaiVG~SGsGKSTL~~LL~r~y-dp~-------~G~I~idG~di~----~~~~~~lr-~~i~~V~Q~~~LF~~T 430 (575)
T PRK11160 364 IKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQ-------QGEILLNGQPIA----SYSEAALR-QAISVVSQRVHLFSGT 430 (575)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC-CCC-------CCEEEECCEECC----CCCHHHHH-HHHCCCCCCCCCCCCC
T ss_conf 7699889998899975999999986236-789-------988999989756----38889998-7613567776025886
Q ss_pred -CCCCCCC--CCCHHHHHHHHHHH--HHHHHCC----EEEECC-CCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf -1100012--13768899899999--9986278----078258-9988999--999886402244474677671353256
Q gi|254780332|r 290 -SSKIRRG--ELTRPDYEKIVACS--QVMQKLP----LYIDQT-GGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 290 -~~~i~~g--~l~~~e~~~i~~a~--~~l~~~~----l~I~d~-~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
..+|+-| +.+++|.....+.. .++-+.| -+|-+. ..+|=.| -.+.+|.+- ++.++++.| .+
T Consensus 431 I~eNi~~g~~~atdee~~~al~~a~l~~~~~~p~GldT~vGe~G~~LSGGQrQRiaiARAll--~~~~iliLD-----Ea 503 (575)
T PRK11160 431 LRDNLLLAAPNATDEALIEVLQQVGLEKLLEGDKGLDAWLGEGGRQLSGGEQRRLGIARALL--HDAPLLLLD-----EP 503 (575)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CC
T ss_conf 78998725898789999999975370645636765345037889959999999999999994--599999984-----98
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 6443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.+. -+...+ ..|.+.|+.+.+ +..+|..|+ | ||- =.+||.|+.|.
T Consensus 504 Ts~-LD~~te--~~i~~~l~~~~~--~rT~i~IaH-------R------lst-------i~~aD~I~vl~ 548 (575)
T PRK11160 504 TEG-LDAETE--RQILELLFEHAQ--NKTVLMITH-------R------LTG-------LEQFDQICVMD 548 (575)
T ss_pred CCC-CCHHHH--HHHHHHHHHHCC--CCEEEEECC-------C------HHH-------HHHCCEEEEEE
T ss_conf 666-799999--999999998669--999999716-------6------989-------99599999998
No 358
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.072 Score=33.67 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHH--
Q ss_conf 321013776556416772677621310027699999999998510111233333212479758999585---217999--
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQL-- 277 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el-- 277 (504)
|.|=..|+++---+.+|++++|-|++|.|||+|.-.++.-+ .. ..| .|.+--.+ |...++
T Consensus 14 p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~-------------t~G-~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DP-------------TSG-EILFNGVQITKLKGKELRK 78 (258)
T ss_pred CCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC-------------CCC-EEEECCCCHHCCCHHHHHH
T ss_conf 79956663576775798689998788886899999986665-88-------------861-5996562210254578999
Q ss_pred HHHHHH---------------------HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCC--HHHHHHH
Q ss_conf 878999---------------------98741011000121376889989999999862780782589988--9999998
Q gi|254780332|r 278 ATRIIS---------------------EQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGIS--MSQLATR 334 (504)
Q Consensus 278 ~~R~is---------------------~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~t--i~~I~~~ 334 (504)
..|-+. .....+..+-.-|-++.+|..+...+..++.=.....--...+| -.+=.+.
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHHCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99741168215776630089999987113552699998678988999999999998393889887750378303479999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE-EEECC
Q ss_conf 8640224447467767135325664432113788999999999999882791999-77138
Q gi|254780332|r 335 ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIA-LSQLS 394 (504)
Q Consensus 335 ~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~-lsQLn 394 (504)
+|.+.++ ++++.-| .| -..-+... -..|+.-||.++++.+++||+ |.|++
T Consensus 159 ARaL~Q~--pkiILAD-----EP-vasLDp~~--a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 159 ARALVQQ--PKIILAD-----EP-VASLDPES--AKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHHCC--CCEEECC-----CC-CCCCCHHH--HHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 9998538--8789617-----96-00058354--899999999999974977999801278
No 359
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.57 E-value=0.064 Score=34.06 Aligned_cols=18 Identities=56% Similarity=0.892 Sum_probs=13.6
Q ss_pred EEEECCCHHHHHHHHHHH
Q ss_conf 776213100276999999
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNI 239 (504)
Q Consensus 222 ~Viaarpg~GKTalalni 239 (504)
+.|-|||.+|||+|.--+
T Consensus 181 iaiiGrPNvGKSsLiN~i 198 (444)
T COG1160 181 IAIIGRPNVGKSSLINAI 198 (444)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999927878705888775
No 360
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=95.57 E-value=0.007 Score=41.42 Aligned_cols=40 Identities=35% Similarity=0.577 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 4321013776556416772-67762131002769999999999
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSD-LIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~-l~Viaarpg~GKTalalniA~~~ 243 (504)
++||++.+|.++- +-+|| |-|+|| +|+|||+|.-.||.+.
T Consensus 142 l~tGVRaId~lLT-~GrGQR~GIFAG-SGVGKSTLLGMiAr~t 182 (439)
T TIGR02545 142 LDTGVRAIDALLT-IGRGQRLGIFAG-SGVGKSTLLGMIARYT 182 (439)
T ss_pred CCCHHHHHHCCCC-CCCCCEEEEECC-CCHHHHHHHHHHHCCC
T ss_conf 1212310111036-556410266337-7444788988875066
No 361
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.56 E-value=0.02 Score=37.99 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
.||.+---+++|+++.|-|+.|.|||+++--++-.. . .....|.|.--+........+.-...+-
T Consensus 15 aL~~vsl~v~~GEi~~liG~nGaGKSTll~~l~G~~-~--------------p~~G~I~~~G~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-P--------------PASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred CEECEEEEECCCCEEEEECCCCCCCCHHHHHHCCCC-C--------------CCCCEEEECCEECCCCCHHHHHHCCEEE
T ss_conf 762317898599699998889999263778766986-7--------------8877599999998864999999789699
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf 1011000121376889989999999862780782589988999--99988640224447467767135325664432113
Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504)
Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504)
+|-.+...+-+.... +. .+.. + ...+|-.+ -.+.+|.+. .++++++.| .|...- +
T Consensus 80 vp~~r~~~~l~~~~~---v~------en~~--~--~~~LSGG~~Qrv~lAral~--~~p~llllD-----EPT~gL-D-- 136 (182)
T cd03215 80 VPEDRKREGLVLDLS---VA------ENIA--L--SSLLSGGNQQKVVLARWLA--RDPRVLILD-----EPTRGV-D-- 136 (182)
T ss_pred EEHHHHHCCCCCCCC---HH------HHHH--C--CCCCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCCC-C--
T ss_conf 602076625678990---99------9951--8--5579989999999999997--199999986-----875458-9--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 78899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
......+.+-++.++++ ++.||..|+- -..+++-||-|++++
T Consensus 137 ~~~~~~i~~~i~~l~~~-g~tvi~isHd-------------------l~~~~~~~Drv~vl~ 178 (182)
T cd03215 137 VGAKAEIYRLIRELADA-GKAVLLISSE-------------------LDELLGLCDRILVMY 178 (182)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEECC-------------------HHHHHHHCCEEEEEC
T ss_conf 99999999999999978-9999999687-------------------999999799999983
No 362
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.53 E-value=0.23 Score=29.86 Aligned_cols=174 Identities=22% Similarity=0.298 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958521799987899998741
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV 288 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I 288 (504)
|+++---+++|+.+.|-|++|.||||++-=++. .-...... ....|.++- +++.+++ .+.++..++=
T Consensus 358 L~~isl~I~~G~~vaiVG~SGsGKSTL~~LL~g-ly~p~~G~-------I~idg~di~----~~~~~~l-r~~i~~V~Q~ 424 (581)
T PRK11176 358 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTR-FYDIDEGE-------ILLDGHDLR----DYTLASL-RNQVALVSQN 424 (581)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH-HCCCCCCE-------EEECCEEHH----HCCHHHH-HCCCCCCCCC
T ss_conf 106633579994431228999867899999985-36678874-------878988512----1476665-0345560777
Q ss_pred C---C----CCCCCC---CCCHHHHHHHHHH---HHHHHHCC----EEEECC-CCCCHHHHH--HHHHHHCCCCCCCEEE
Q ss_conf 0---1----100012---1376889989999---99986278----078258-998899999--9886402244474677
Q gi|254780332|r 289 P---S----SKIRRG---ELTRPDYEKIVAC---SQVMQKLP----LYIDQT-GGISMSQLA--TRARRLKRQRGLDLLI 348 (504)
Q Consensus 289 ~---~----~~i~~g---~l~~~e~~~i~~a---~~~l~~~~----l~I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vv 348 (504)
+ . ..|+-| ..++++..+..+. .+.+.++| -.|.+. ..+|-.|-. +.+|.+. ++.++++
T Consensus 425 ~~lF~~TI~eNi~~~~~~~~~~~~i~~a~~~a~~~~~i~~lp~gldt~vge~G~~LSgGQrQRialARall--~~~~ili 502 (581)
T PRK11176 425 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL--RDSPILI 502 (581)
T ss_pred CEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEE
T ss_conf 61107729999722674324568999999987777899865541145004898978999999999999996--7999899
Q ss_pred ECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 6713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 349 VDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 349 IDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
.| .+.+.- +...+ ..|-+.|+.+.+ +..||..|+ | ++ .| .+||.|+.|.
T Consensus 503 LD-----E~TSal-D~~te--~~i~~~l~~~~~--~~Tvi~IaH-------r------l~------~i-~~~D~I~vl~ 551 (581)
T PRK11176 503 LD-----EATSAL-DTESE--RAIQAALDELQK--NRTSLVIAH-------R------LS------TI-EKADEILVVE 551 (581)
T ss_pred EE-----CCCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEECC-------C------HH------HH-HHCCEEEEEE
T ss_conf 85-----863358-99999--999999999739--999999718-------8------98------99-8499899998
No 363
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.25 Score=29.60 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCH---HHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 1376889989999999862780782589--9889---9999988640224447467767
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTG--GISM---SQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti---~~I~~~~r~~~~~~gi~~vvID 350 (504)
.|+-.+..++.-|..-+.+-++.|.|.| ++.+ .+|...+|+++. .|.-+|+|-
T Consensus 409 ~LSGGq~Qrv~iAraL~~~p~lLilDEPT~GlD~~~~~~i~~li~~l~~-~G~tvl~is 466 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVS 466 (510)
T ss_pred HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEE
T ss_conf 5999999999999999859988999797558999999999999999996-899999990
No 364
>PRK10037 cell division protein; Provisional
Probab=95.51 E-value=0.17 Score=30.92 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=30.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 677621310027699999999998510111233333212479758999585
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE 271 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE 271 (504)
+.|.+.|-|+|||+++-|+|...++ .|++|+.+-+.
T Consensus 4 ial~s~kGGVGkTTltAnLA~aL~~---------------~g~~VlaID~d 39 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQM---------------LGENVLVIDAC 39 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECC
T ss_conf 9996078887689999999999997---------------79918999578
No 365
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.50 E-value=0.034 Score=36.15 Aligned_cols=149 Identities=15% Similarity=0.264 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH--------------------------HHHHHHHHHCCCCCCCCCCC
Q ss_conf 2101377655641677267762131002769999--------------------------99999985101112333332
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLAT--------------------------NIAYNVADAYKAELQTDGSY 257 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalal--------------------------niA~~~A~~~~~~~~~~~~~ 257 (504)
+|.+.||.+==-.+||+.+-+-||+|+||||++- ++=.|+|.-.+.+.+++.+.
T Consensus 373 ~~~~aL~~i~l~~~~G~~vALVGRSGSGKsTlv~LlPRFy~p~~G~IllDG~~l~d~~L~~LR~q~alVsQ~V~LFdDTi 452 (603)
T TIGR02203 373 RDRPALDSISLVVEPGETVALVGRSGSGKSTLVNLLPRFYEPDSGQILLDGVDLQDYTLADLRRQVALVSQDVVLFDDTI 452 (603)
T ss_pred CCHHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCHHHHHHHHHHHCCCEEECCCCH
T ss_conf 87241236665115873599870688538999855236604588856527840443026635623000215237205326
Q ss_pred CCCCCCEEEEEEC---CCCHHHHHHHHHHH-HH---------HHCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCEEEECC
Q ss_conf 1247975899958---52179998789999-87---------4101100012-137688998999999986278078258
Q gi|254780332|r 258 KTINGGIVGFYSL---EMSSEQLATRIISE-QT---------EVPSSKIRRG-ELTRPDYEKIVACSQVMQKLPLYIDQT 323 (504)
Q Consensus 258 ~~~~g~~Vl~fSl---EMs~~el~~R~is~-~s---------~I~~~~i~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~ 323 (504)
+ .+|.|=.. +.+.+++ ++.+.. -. |++..-=.+| +|+-.+..|+.-|-.-+++.|+-|-|.
T Consensus 453 A----~NvaYg~~da~~~~~a~v-~~A~~~Ayl~dfvd~lP~Gldt~vG~NG~~LSGGQRQRlAIARAllKdAPiLILDE 527 (603)
T TIGR02203 453 A----NNVAYGRLDAEQVDRAEV-ERALAAAYLQDFVDKLPLGLDTPVGENGSRLSGGQRQRLAIARALLKDAPILILDE 527 (603)
T ss_pred H----HHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 7----764404234001787899-99999864688871478885634241322377604589999999974266237778
Q ss_pred --CCCC---HHHHHHHHHHHCCC-------CCC-------CEEEECCHHHCCC
Q ss_conf --9988---99999988640224-------447-------4677671353256
Q gi|254780332|r 324 --GGIS---MSQLATRARRLKRQ-------RGL-------DLLIVDYIQLMTT 357 (504)
Q Consensus 324 --~~~t---i~~I~~~~r~~~~~-------~gi-------~~vvIDYLqli~~ 357 (504)
+.+. ==.|.+...++.+. |-+ .+||.|.=++++.
T Consensus 528 ATSALDnESER~vQaALe~LM~~RTtLVIAHRLSTIe~AD~I~V~d~G~IvE~ 580 (603)
T TIGR02203 528 ATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGKIVER 580 (603)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCEEEEEECCEEECC
T ss_conf 87331411189999999987048965886201102222988898417657634
No 366
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.26 Score=29.48 Aligned_cols=28 Identities=39% Similarity=0.671 Sum_probs=23.6
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 4167726776213100276999999999
Q gi|254780332|r 215 GLQRSDLIIIAGRPGMGKTSLATNIAYN 242 (504)
Q Consensus 215 Gl~~G~l~Viaarpg~GKTalalniA~~ 242 (504)
|+++..-+++.|.||.|||.+|-++|..
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8988836999889997589999998754
No 367
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=95.47 E-value=0.035 Score=36.12 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=41.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 7726776213100276999999999985101112333332124797589995852179998789
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRI 281 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~ 281 (504)
+.-|.|..+.||.|||+++.|+|...|. .|++|+++-..|-.-.+...+
T Consensus 103 ~~~LaItS~~pGEGKS~vAaNLA~~~Aq---------------~G~RvLLVDaDLRrP~lh~~f 151 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQ---------------LGEKTLLIDANLRDPVQHRNF 151 (274)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCCCHHHHHH
T ss_conf 8389996899999899999999999996---------------799199995888884477975
No 368
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.46 E-value=0.26 Score=29.45 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 67726776213100276999999999985
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~ 245 (504)
.+|-...+.|.||+|||+++-.+|...-+
T Consensus 347 ~kg~IlclvGpPGvGKTSl~~sIA~al~r 375 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 77877996469987724699999998589
No 369
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.46 E-value=0.26 Score=29.45 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=11.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 24797589995852179998789999
Q gi|254780332|r 259 TINGGIVGFYSLEMSSEQLATRIISE 284 (504)
Q Consensus 259 ~~~g~~Vl~fSlEMs~~el~~R~is~ 284 (504)
...|-.|++.-.-=+......|+++-
T Consensus 342 i~~Ge~ialvG~NGsGKSTLlk~l~G 367 (632)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLG 367 (632)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 57887799988988427799998606
No 370
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=95.45 E-value=0.0081 Score=40.91 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHH-HHHCCCC-EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 432101377655-6416772-67762131002769999999999
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSD-LIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~-l~Viaarpg~GKTalalniA~~~ 243 (504)
+|||..-+|-++ .| .|+ +-|+|+ ||+|||||+-.||.++
T Consensus 137 L~tGvRaiDGlLTcG--~GQRiGIFA~-aG~GKSTLL~~i~~g~ 177 (430)
T TIGR02546 137 LPTGVRAIDGLLTCG--EGQRIGIFAG-AGVGKSTLLGMIARGA 177 (430)
T ss_pred CHHHHHHHHHHHHCC--CCCEEEEEEC-CCCCHHHHHHHHHCCC
T ss_conf 101466754344036--6530578708-8861668999986189
No 371
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.44 E-value=0.074 Score=33.61 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=59.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 677621310027699999999998510111233333212479758999585---21799987899998741011000121
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
++-|||.||+|||+||-.+...... ...+..|..+|+. .+..++..+-+... .|.
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~-------------~~~~~~v~ii~~D~f~~~~~~l~~~~~~~~---------~g~ 58 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR-------------WPDHPNVELITTDGFLYPNKELIERGLMDR---------KGF 58 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCCCHHHHHHHHHHH---------CCC
T ss_conf 9897889987799999999998600-------------269994899978787578522888646651---------699
Q ss_pred CCHHHHHHHHHHHHHHHHC-C-EE--EECCC--CCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 3768899899999998627-8-07--82589--9889999998864022444746776713532566
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKL-P-LY--IDQTG--GISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~-~-l~--I~d~~--~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
-...+++.+.+....++.. + +. ++|.. +.+..+. ..-.+.++|||.-+.++..+
T Consensus 59 P~afD~~ll~~~L~~Lk~G~~~V~~PvYd~~~~~r~~~~~-------~~i~~~~IiIvEGi~~L~~~ 118 (220)
T cd02025 59 PESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEK-------QTVDQPDILIIEGLNVLQTG 118 (220)
T ss_pred CHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCCCE-------EEECCCCEEEEEEEEEECCC
T ss_conf 3021599999999999759985340101212125789842-------87269986998323220165
No 372
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.43 E-value=0.27 Score=29.36 Aligned_cols=136 Identities=23% Similarity=0.214 Sum_probs=65.0
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHH-HCCCCCCCCCCC
Q ss_conf 776213100276999999999985101112333332124797589995852-179998789999874-101100012137
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM-SSEQLATRIISEQTE-VPSSKIRRGELT 299 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM-s~~el~~R~is~~s~-I~~~~i~~g~l~ 299 (504)
+++.|.||.|||..++-.+.+.... ..+..++|+..-= =..|+.+++-..... .... ...+..+
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~-------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~-~~~~~~~ 68 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDS-------------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVG-YLIGGTS 68 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHH-------------CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE-EEECCCC
T ss_conf 9998899717999999999999975-------------6897699974679999999999999748871799-9961363
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6889989999999862780782589988999999886402-244474677671353256644321137889999999999
Q gi|254780332|r 300 RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKA 378 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~ 378 (504)
..+.. .......++.| .|+..+.....+-. ....+++||||=.+.+..... ...+..+.+.
T Consensus 69 ~~~~~-----~~~~~~~~ilv-----~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~-----~~~~~~~~~~--- 130 (144)
T cd00046 69 IKQQE-----KLLSGKTDIVV-----GTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF-----GLLGLKILLK--- 130 (144)
T ss_pred HHHHH-----HHHCCCCCEEE-----CCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCC-----HHHHHHHHHH---
T ss_conf 67789-----87458984998-----288999999973876555100999988887643796-----9999999996---
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 9988279199977
Q gi|254780332|r 379 LAKELNIPIIALS 391 (504)
Q Consensus 379 lA~e~~ipvi~ls 391 (504)
..-++++++||
T Consensus 131 --~~~~~~~l~lS 141 (144)
T cd00046 131 --LPKDRQVLLLS 141 (144)
T ss_pred --CCCCCCEEEEC
T ss_conf --79999489982
No 373
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.12 Score=31.96 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 21013776556416772677621310027699999
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATN 238 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalaln 238 (504)
+.+..||+..--..+|+.+=|-|++|-|||++.--
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~ 51 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRL 51 (339)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 75156514068873886899974888867889999
No 374
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.42 E-value=0.03 Score=36.59 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=32.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 67762131002769999999999851011123333321247975899958521
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS 273 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs 273 (504)
+.|..|.-|+|||+++.|+|...|+ +|++|+.+-..+.
T Consensus 2 i~v~sgKgGvGkt~~~~nLa~~la~---------------~G~~vll~D~D~g 39 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAK---------------LGKRVLLLDADLG 39 (139)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCC
T ss_conf 8996499998399999999999997---------------8996999989899
No 375
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.41 E-value=0.19 Score=30.41 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=82.7
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH--HHH
Q ss_conf 776556416772677621310027699999999998510111233333212479758999585217999878999--987
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS--EQT 286 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is--~~s 286 (504)
|+.+.--+++|+++.|-|+.|.|||+|.--++- . ...... ....|+++. ..+..+++.+... ...
T Consensus 13 L~~isl~v~~Ge~v~iiGpNGaGKSTLlk~i~G-l-~p~~G~-------I~i~g~~i~----~~~~~~~~~~~~~l~q~~ 79 (245)
T PRK03695 13 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-L-LSGSGE-------IQFAGQPLE----AWSAAELARHRAYLSQQQ 79 (245)
T ss_pred CCCEEEEECCCCEEEEECCCCCHHHHHHHHHHC-C-CCCCCE-------EEECCEECC----CCCHHHHHHCEEEEEECC
T ss_conf 507489995998999997899419999999846-6-888965-------999999735----389888743068996235
Q ss_pred ----HHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC-CCCCCHHH--HHHHHHHHCC---CC--CCCEEEECCHH
Q ss_conf ----41011-0001213768899899999998627807825-89988999--9998864022---44--47467767135
Q gi|254780332|r 287 ----EVPSS-KIRRGELTRPDYEKIVACSQVMQKLPLYIDQ-TGGISMSQ--LATRARRLKR---QR--GLDLLIVDYIQ 353 (504)
Q Consensus 287 ----~I~~~-~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d-~~~~ti~~--I~~~~r~~~~---~~--gi~~vvIDYLq 353 (504)
..+.. .+.-+........++.+..+.+.=.. +++. ...+|-.+ -.+.++.+.+ .- ..++++.|
T Consensus 80 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~Qrv~la~all~i~~a~~p~p~illLD--- 155 (245)
T PRK03695 80 TPPFAMPVFHYLTLHQPAKTRTGALNDVAGALGLDD-KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD--- 155 (245)
T ss_pred CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCH-HHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC---
T ss_conf 645577399998603862118999999999859941-5487926689889999999999963272327888789973---
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 354 LMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 354 li~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|... -+ ......+-+-++.+++ -++.||..++ |+ ..++.-||-|++++.
T Consensus 156 --EPt~g-LD--~~~~~~l~~~i~~l~~-~g~tIi~vtH----------------dl---~~~~~~~dri~vl~~ 205 (245)
T PRK03695 156 --EPMNS-LD--VAQQSALDRLLSELCQ-QGIAVVMSSH----------------DL---NHTLRHADRVWLLKQ 205 (245)
T ss_pred --CCCCC-CC--HHHHHHHHHHHHHHHH-CCCEEEEEEC----------------CH---HHHHHHCCEEEEEEC
T ss_conf --87667-89--9999999999999984-7999999942----------------68---999997999999989
No 376
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.049 Score=34.98 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=79.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
..|+.+.--+.+|+.+.+.|+-|.|||+|.--++ .... .....|.++..++....-..| ...+
T Consensus 14 ~~L~~vsl~i~~Gei~gl~G~NGaGKSTLl~~i~-Gl~~--------------p~~G~i~i~g~~~~~~~~~~~--~~ig 76 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL-GLLK--------------PDSGEIKVLGKDIKKEPEEVK--RRIG 76 (173)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCC--------------CCCCEEEECCEECCCCHHHHH--CCEE
T ss_conf 9982208788799399998789979999999997-6857--------------787889999999886848886--5789
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH--HHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCH
Q ss_conf 4101100012137688998999999986278078258998899--99998864022444746776713532566443211
Q gi|254780332|r 287 EVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS--QLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEEN 364 (504)
Q Consensus 287 ~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~--~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~ 364 (504)
=++-..-.-+.++-.|. + .+|-. +-.+.+|.+. +++++++.| .|... -+-
T Consensus 77 ~v~q~~~l~~~ltv~e~--l------------------~LSgG~kqrv~ia~al~--~~p~lllLD-----EPt~g-LD~ 128 (173)
T cd03230 77 YLPEEPSLYENLTVREN--L------------------KLSGGMKQRLALAQALL--HDPELLILD-----EPTSG-LDP 128 (173)
T ss_pred EEECCCCCCCCCCHHHH--H------------------HCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCC-CCH
T ss_conf 99568766712677898--6------------------33989999999999996--499999990-----88657-999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 3788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 365 RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 365 r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.....+..-++.++++ +..||..++ +-..+++-||-|+++++
T Consensus 129 --~~~~~i~~~i~~l~~~-g~tvi~~tH-------------------~l~~~~~~~dri~vl~~ 170 (173)
T cd03230 129 --ESRREFWELLRELKKE-GKTILLSSH-------------------ILEEAERLCDRVAILNN 170 (173)
T ss_pred --HHHHHHHHHHHHHHHC-CCEEEEECC-------------------CHHHHHHHCCEEEEEEC
T ss_conf --9999999999999968-999999928-------------------38999986999999939
No 377
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.37 E-value=0.031 Score=36.46 Aligned_cols=44 Identities=32% Similarity=0.461 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 432101377655641677267762131002769999999999851
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
+.||++.+|-++- +-+|+=.-|-|.+|+|||+++.+++.|+++.
T Consensus 53 l~TGIr~ID~l~p-igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~ 96 (274)
T cd01133 53 LETGIKVIDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred CCCCCEEEECCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 1158666644466-1478577875799998236899999999850
No 378
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.36 E-value=0.24 Score=29.72 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHH
Q ss_conf 377655641677-2677621310027699999999998510111233333212479758-99958521799987899998
Q gi|254780332|r 208 TLDKQMGGLQRS-DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 208 ~LD~~~gGl~~G-~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~ 285 (504)
.|..+..|+..+ -+++|.|.+|+|||++.-.++.+.- .+...+ .++..-++..++..-+.+ .
T Consensus 31 al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~---------------~~~~~~~~i~~~~l~~~~ll~~i~~-~ 94 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD---------------QERVVAAKLVNTRVDAEDLLRMVAA-D 94 (269)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC---------------CCCEEEEEECCCCCCHHHHHHHHHH-H
T ss_conf 99999999964896599972998988999999998459---------------3454899976999999999999999-8
Q ss_pred HHHCCC
Q ss_conf 741011
Q gi|254780332|r 286 TEVPSS 291 (504)
Q Consensus 286 s~I~~~ 291 (504)
-|++..
T Consensus 95 lg~~~~ 100 (269)
T TIGR03015 95 FGLETE 100 (269)
T ss_pred CCCCCC
T ss_conf 598988
No 379
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.36 E-value=0.1 Score=32.49 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=63.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
+...+++++.|++|.|||.+|+..|+.....++..-..-.-.....|....|.--.+... +.=++...... +..+
T Consensus 16 l~~~~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp~v~~g~~iGfLPG~~~eK--~~p~~~p~~d~-l~~~-- 90 (205)
T pfam02562 16 IRKNDIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRPAVEAGEKLGFLPGDLEEK--VDPYLRPLYDA-LYDM-- 90 (205)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHH--HHHHHHHHHHH-HHHH--
T ss_conf 717980799899986099999999999997189437999757712577545588978999--99999999999-9987--
Q ss_pred CCCCHHHHHHHHH-------HHHHHH-----HCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE-CCHH
Q ss_conf 2137688998999-------999986-----27807825899889999998864022444746776-7135
Q gi|254780332|r 296 GELTRPDYEKIVA-------CSQVMQ-----KLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIV-DYIQ 353 (504)
Q Consensus 296 g~l~~~e~~~i~~-------a~~~l~-----~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvI-DYLq 353 (504)
+....++.+.+ ....++ ++=+.+|+.-++|..++...+-|+- .+-++|+. |.-|
T Consensus 91 --~~~~~~~~l~~~~~Ie~~pl~~iRGrTf~n~~iIvDEaQN~t~~~lk~ilTRiG--~~SK~vi~GD~~Q 157 (205)
T pfam02562 91 --LGAEKVEKLIERGVIEIAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRIG--FNSKMVVTGDITQ 157 (205)
T ss_pred --HCHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEECHHCCCHHHHHHHHHHCC--CCCEEEEECCHHH
T ss_conf --289999999975975661467655476256889997221399999999984217--9968999478665
No 380
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.35 E-value=0.24 Score=29.76 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=30.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 677621310027699999999998510111233333212479758999585217999878999987
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504)
|+ |-|.+|.|||-|+.-++..+ + ..+.+|+|.|-| +.+..++.+.-
T Consensus 144 Lf-IyG~~GlGKTHLL~AIgn~i-~--------------~~~~kV~Yvtae----~F~~~~v~ai~ 189 (455)
T PRK12422 144 IY-LFGPEGSGKTHLMQAAVSAL-R--------------ESGGKILYVSSE----LFTEHLVSAIR 189 (455)
T ss_pred EE-EECCCCCCHHHHHHHHHHHH-H--------------CCCCEEEEECHH----HHHHHHHHHHH
T ss_conf 58-87899997899999999985-3--------------799869997499----99999999997
No 381
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.051 Score=34.82 Aligned_cols=47 Identities=30% Similarity=0.506 Sum_probs=35.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 772677621310027699999999998510111233333212479758999585217999878999
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is 283 (504)
.+.=+++-|.||+|||-+|.-++..+++ .|.+|+|++. .+++.++-.
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~---------------~g~sv~f~~~----~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK---------------AGISVLFITA----PDLLSKLKA 150 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH----HHHHHHHHH
T ss_conf 5882899899998799999999999998---------------3984999885----999999999
No 382
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.28 E-value=0.091 Score=32.90 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=58.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 2677621310027699999999998510111233333212479758999585---2179998789999874101100012
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~is~~s~I~~~~i~~g 296 (504)
-++-|+|.||+||||||-.++....... ....|+.+++. .+..++..+ +.. =++|
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~~L~~~~-------------~~~~~~~vpmDGFH~~~~~L~~~--------~~~-~rkG 92 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWEALSQQG-------------PELPAIQVPMDGFHLDNAVLDAR--------GLR-ARKG 92 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-------------CCCCEEEECCCCCCCCHHHHHHC--------CCC-CCCC
T ss_conf 8999989998899999999999986237-------------99857997365334572555435--------474-3379
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CEEE--ECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 13768899899999998627--8078--258998899999988640224447467767135325
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKL--PLYI--DQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~--~l~I--~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
.-...++..+......+++. .+++ +|. .+.+....... -..+.++|||.-+.|+.
T Consensus 93 aP~TFD~~~l~~~L~~Lk~~~~~v~~P~yD~---~~~d~~~~~~~--i~~~~~IVIvEGnyLLl 151 (230)
T PRK09270 93 APETFDVAGLAELLRRLREGDCEVYWPVFDR---QLEDPVADAIV--VGPTARLVIVEGNYLLL 151 (230)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEECCCCC---CCCCCCCCCEE--ECCCCCEEEEECEEEEC
T ss_conf 9102169889999999856897175213432---24577889536--66998689993447613
No 383
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.27 E-value=0.025 Score=37.18 Aligned_cols=45 Identities=33% Similarity=0.442 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4321013776556416772677621310027699999999998510
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~ 247 (504)
+.||++.+|-++- +-+|+=+-|-|.+|+|||+++..++.|+++.+
T Consensus 139 leTGIkaID~l~p-igkGQRigIfggaGvGKTvLl~eli~niak~~ 183 (480)
T CHL00060 139 FETGIKVVDLLAP-YRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 183 (480)
T ss_pred HHCCHHHHHCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 1027044431254-00366887656899887899999996120037
No 384
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.3 Score=29.01 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
++++---+++|+.+-|.|..|.|||+|+-.++
T Consensus 264 l~~vsf~v~~GEivgl~G~nGsGKsTL~~~l~ 295 (491)
T PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLF 295 (491)
T ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
T ss_conf 20267999689689977899997889999981
No 385
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.25 E-value=0.12 Score=32.10 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHH
Q ss_conf 7762131002769999999999
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~ 243 (504)
+++.|.||+|||+.|.-+|...
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l 60 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALAREL 60 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9888929848999999999996
No 386
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.23 E-value=0.13 Score=31.75 Aligned_cols=150 Identities=22% Similarity=0.337 Sum_probs=75.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHH--HCCCC---CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf 167726776213100276999999999985--10111---2333332124797589995852179998789999874101
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVAD--AYKAE---LQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPS 290 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~--~~~~~---~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~ 290 (504)
+++|+...|-|.+|.|||||+--+. -+-. .+... .....|.-..=|+.|.|.=-. -||+.=-+ .
T Consensus 353 ~~aGe~laIIGPSgSGKStLaR~~v-G~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQd---vELF~GTv-------a 421 (556)
T TIGR01842 353 IQAGEALAIIGPSGSGKSTLARILV-GIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQD---VELFSGTV-------A 421 (556)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH-HCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCC---CCCCCCCH-------H
T ss_conf 6377458887478652588987887-21013565336403344023753658801547985---05076767-------6
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHCCEEE-----ECC------CCCCHHHH--HHHHHHHCCCCC-CCEEEECCHHHC
Q ss_conf 1000121376-88998999999986278078-----258------99889999--998864022444-746776713532
Q gi|254780332|r 291 SKIRRGELTR-PDYEKIVACSQVMQKLPLYI-----DQT------GGISMSQL--ATRARRLKRQRG-LDLLIVDYIQLM 355 (504)
Q Consensus 291 ~~i~~g~l~~-~e~~~i~~a~~~l~~~~l~I-----~d~------~~~ti~~I--~~~~r~~~~~~g-i~~vvIDYLqli 355 (504)
.+|- ++.+ -|=++|.+|.+--.=.-+-+ ||| .++|=.|= .+-+|.+ || +.+||.|
T Consensus 422 ~NIA--RF~en~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAl---yG~P~lvvLD----- 491 (556)
T TIGR01842 422 ENIA--RFGENADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARAL---YGDPKLVVLD----- 491 (556)
T ss_pred HHCC--CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCEEEEEC-----
T ss_conf 4024--46887887899999976030357516968854431377777861468999999987---1798378732-----
Q ss_pred CCCCCCCCHHHHHHHH--HHHHHHHHHHHHCCCEEEEEE
Q ss_conf 5664432113788999--999999999882791999771
Q gi|254780332|r 356 TTSKKIEENRVLEITG--ITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 356 ~~~~~~~~~r~~~i~~--is~~lK~lA~e~~ipvi~lsQ 392 (504)
+|+.+=. +.|| ..+.|+.+ |.=++.||+.||
T Consensus 492 EPNsNLD-----~~GE~AL~~Ai~~l-K~rg~tvv~itH 524 (556)
T TIGR01842 492 EPNSNLD-----EEGEQALANAIKAL-KARGITVVVITH 524 (556)
T ss_pred CCCCCCC-----HHHHHHHHHHHHHH-HHCCCEEEEEEC
T ss_conf 8898766-----17899999999999-867972899841
No 387
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.22 E-value=0.12 Score=32.10 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 432101377655641677267762131002769999999999851
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
.+.|.+.|+++.--+.+|++.-+.|.+|.|||+|. .+.+...+.
T Consensus 11 Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTll-kLi~~~e~p 54 (223)
T COG2884 11 YPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLL-KLIYGEERP 54 (223)
T ss_pred CCCCCHHHHCCEEEECCCEEEEEECCCCCCHHHHH-HHHHHHHCC
T ss_conf 58973666281576468608998678888789999-999841367
No 388
>PTZ00243 ABC transporter; Provisional
Probab=95.21 E-value=0.31 Score=28.89 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=63.8
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH------CCCCCCCCCCCCCCCC---CEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 41677267762131002769999999999851------0111233333212479---75899958521799987899998
Q gi|254780332|r 215 GLQRSDLIIIAGRPGMGKTSLATNIAYNVADA------YKAELQTDGSYKTING---GIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 215 Gl~~G~l~Viaarpg~GKTalalniA~~~A~~------~~~~~~~~~~~~~~~g---~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
-+.+|+|++|.|+.|.|||+|..-+.-..-.. .....+.....|..+| .+++ |--++.++..-.=+-++.
T Consensus 682 ~v~~G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~TiReNIL-Fg~~~d~~rY~~Vi~aCa 760 (1560)
T PTZ00243 682 SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNIL-FFDEEDAARLADAVRVSQ 760 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCHHHHHC-CCCHHHHHHHHHHHHHHC
T ss_conf 8659978999899998799999999688843563899747089757844405873999810-886104999999999967
Q ss_pred HHHCCCCC---------CCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 74101100---------012-13768899899999998627807825899
Q gi|254780332|r 286 TEVPSSKI---------RRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 286 s~I~~~~i---------~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~ 325 (504)
-.-++..+ .+| +|+-.+..||.-|-.-+++.++|+-|.|-
T Consensus 761 L~~Dl~~LP~GD~TeIGErGinLSGGQKQRIALARAvYsdadIyLLDDpL 810 (1560)
T PTZ00243 761 LEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 88889856897766305676357713789999999874267757522854
No 389
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.21 E-value=0.31 Score=28.88 Aligned_cols=174 Identities=15% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--------ECCCCHHHHH-
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999--------5852179998-
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFY--------SLEMSSEQLA- 278 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~f--------SlEMs~~el~- 278 (504)
.|+.+---+.+|+.+.|.|+.|.|||+++-.++- .-.. ....|.+- .+......+.
T Consensus 16 vl~~vsl~i~~Ge~~aliG~sGsGKSTLl~~l~g-l~~p--------------~~G~i~~~~~~i~~~~~~~~~~~~~~~ 80 (248)
T PRK11264 16 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL-LEQP--------------EAGTIRVGDITIDTARSLSQQKGLIRQ 80 (248)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC--------------CCCEEEECCEEECCCCCCCCCHHHHHH
T ss_conf 8943177987998999999999809999999975-8999--------------986799999995288756432779999
Q ss_pred -HHHHHH-------------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE--EECCC-CCCHHHHH--HHHHHHC
Q ss_conf -789999-------------87410110001213768899899999998627807--82589-98899999--9886402
Q gi|254780332|r 279 -TRIISE-------------QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY--IDQTG-GISMSQLA--TRARRLK 339 (504)
Q Consensus 279 -~R~is~-------------~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~--I~d~~-~~ti~~I~--~~~r~~~ 339 (504)
.|-++. .-+|-...+..+..+..+.. ..+.+.+....|. -+..| .+|=.+-+ +.+|.+.
T Consensus 81 ~r~~ig~vfQ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRvaiAraL~ 158 (248)
T PRK11264 81 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT--ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 158 (248)
T ss_pred HHHCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf 8725279902775588877999999999996699889999--99999999859951333780108999988999876314
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 24447467767135325664432113788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 340 RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 340 ~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
..+++++.| .+... -+. ....+|...|+.++++ +..||..++ | -..+.+-
T Consensus 159 --~~P~iLllD-----EPTs~-LD~--~~~~~i~~~l~~l~~~-g~tii~vtH----------------d---l~~~~~~ 208 (248)
T PRK11264 159 --MRPEVILFD-----EPTSA-LDP--ELVGEVLNTIRQLAQE-KRTMVIVTH----------------E---MSFARDV 208 (248)
T ss_pred --CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHC-CCCEEEEEC----------------C---HHHHHHH
T ss_conf --799999987-----98765-899--9999999999999976-992899989----------------9---9999996
Q ss_pred CCEEEEEEC
Q ss_conf 387889725
Q gi|254780332|r 420 ADVVLFVIR 428 (504)
Q Consensus 420 AD~v~~l~R 428 (504)
||-|++|+.
T Consensus 209 adrv~vm~~ 217 (248)
T PRK11264 209 ADRAIFMDQ 217 (248)
T ss_pred CCEEEEEEC
T ss_conf 998999989
No 390
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.26 Score=29.45 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 7765564167726776213100276999999999985101112333332124-797589995852179998789999874
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI-NGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~-~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
|.+.--++.+|+++|+-|++|+|||++ +|++.......+............ -+.+-+.|.-| -..-|+-...+
T Consensus 21 le~vsL~ia~ge~vv~lGpSGcGKTTL-Lnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~-----~LlPWl~~~dN 94 (259)
T COG4525 21 LEDVSLTIASGELVVVLGPSGCGKTTL-LNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNE-----ALLPWLNVIDN 94 (259)
T ss_pred HHCCCEEECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCEECCCCCCCCEEEECCC-----CCCHHHHHHHH
T ss_conf 633550235897899976888657889-999862758566648889986568874323473267-----63304677888
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHC------CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCC
Q ss_conf 10110001213768899899999998627------807825899889999998864022444746776713532566443
Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACSQVMQKL------PLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKI 361 (504)
Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~~~l~~~------~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~ 361 (504)
|.+.--..| +...+. -..|...+... .-||..-++ -.-+=...+|.+. -.+++.+.| .+=+.-
T Consensus 95 vafgL~l~G-i~k~~R--~~~a~q~l~~VgL~~~~~~~i~qLSG-GmrQRvGiARALa--~eP~~LlLD-----EPfgAl 163 (259)
T COG4525 95 VAFGLQLRG-IEKAQR--REIAHQMLALVGLEGAEHKYIWQLSG-GMRQRVGIARALA--VEPQLLLLD-----EPFGAL 163 (259)
T ss_pred HHHHHHHCC-CCHHHH--HHHHHHHHHHHCCCCCCCCCEEEECC-HHHHHHHHHHHHH--CCCCEEEEC-----CCHHHH
T ss_conf 887777648-878899--99999999983734324322575065-0888777888760--486647634-----850567
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf -211378899999999999988279199977
Q gi|254780332|r 362 -EENRVLEITGITMALKALAKELNIPIIALS 391 (504)
Q Consensus 362 -~~~r~~~i~~is~~lK~lA~e~~ipvi~ls 391 (504)
.-.|. .+-.-|-.+.++.+--+++..
T Consensus 164 Da~tRe----~mQelLldlw~~tgk~~lliT 190 (259)
T COG4525 164 DALTRE----QMQELLLDLWQETGKQVLLIT 190 (259)
T ss_pred HHHHHH----HHHHHHHHHHHHHCCEEEEEE
T ss_conf 788899----999999999997298189996
No 391
>KOG0780 consensus
Probab=95.19 E-value=0.31 Score=28.85 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=49.0
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH--HHHHHHHHHHHCC
Q ss_conf 56416772677621310027699999999998510111233333212479758999585217999--8789999874101
Q gi|254780332|r 213 MGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL--ATRIISEQTEVPS 290 (504)
Q Consensus 213 ~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el--~~R~is~~s~I~~ 290 (504)
.-+..+-.++.+.|--|.|||+.+..+|...-+ +|+.|++..-.-=+--- ..+..+..++||+
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk---------------kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK---------------KGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred CCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHH---------------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 615689708999830578863008999999984---------------68724577602245306899998767407706
Q ss_pred CCCCCCCCCHHHHHHH-HHHHHHHHHC--CEEEECCCC
Q ss_conf 1000121376889989-9999998627--807825899
Q gi|254780332|r 291 SKIRRGELTRPDYEKI-VACSQVMQKL--PLYIDQTGG 325 (504)
Q Consensus 291 ~~i~~g~l~~~e~~~i-~~a~~~l~~~--~l~I~d~~~ 325 (504)
.. .+++.+--++ .++.++.++- .+.|.|+++
T Consensus 160 yg----syte~dpv~ia~egv~~fKke~fdvIIvDTSG 193 (483)
T KOG0780 160 YG----SYTEADPVKIASEGVDRFKKENFDVIIVDTSG 193 (483)
T ss_pred EE----CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 84----03665558999999998886397289982787
No 392
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.19 E-value=0.31 Score=28.84 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=27.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 267762131002769999999999851011123333321247975899958521
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS 273 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs 273 (504)
....|-|.+|.|||-++.-++..+. ..+++|.|++++--
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~---------------~~~~~~~yl~~~~~ 77 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE---------------ERGKSAIYLPLAEL 77 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---------------CCCCCEEEECHHHH
T ss_conf 8699989999988999999999986---------------26995799529998
No 393
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.19 E-value=0.31 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.4
Q ss_pred CCCEEEE-EEEECCCCCCEEEEEEEECCCCCE
Q ss_conf 3883899-997408997259999974685402
Q gi|254780332|r 457 VKGIADI-IIAKQRHGPTGTVTLAFQAEFTRF 487 (504)
Q Consensus 457 ~~~~~el-ivaKnR~G~~g~~~~~f~~~~~~f 487 (504)
..|+.+. ...|+|.|.+-.+.|.+++....+
T Consensus 351 ~~giI~~~~~~~G~~Gr~~~i~L~~d~~~v~~ 382 (394)
T PRK00411 351 MLGLINTRYTGKGGRGRTRLISLSYDPEDVLE 382 (394)
T ss_pred HCCCEEEEEECCCCCCCEEEEEECCCHHHHHH
T ss_conf 67985888754888885269996279999999
No 394
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.062 Score=34.18 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=22.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 26776213100276999999999985
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~ 245 (504)
+-|++.|.+|+|||+||..+|..+..
T Consensus 46 HA~Lf~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 24653589980899999999999866
No 395
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.32 Score=28.80 Aligned_cols=184 Identities=22% Similarity=0.247 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHH---H
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---852179998---7
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLA---T 279 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~---~ 279 (504)
.+.+|.+---+.+|+..-|.|-+|+|||+++..+..-.-.. .....+..+.|-. +.|+.+++- -
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~----------~~~i~~G~i~f~g~~l~~l~~~~~~~iRG 87 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP----------NARIVGGEILFDGKDLLSLSEKELRKIRG 87 (316)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC----------CCEEEEEEEEECCCCCCCCCHHHHHHHCC
T ss_conf 77771405887589689998389788999999998466888----------97486118998896466699999986317
Q ss_pred HHHHHHHHHC------CCCC--------CC-CCCCHHHHHHHHHHHHHHHHCCEE-----EECCC-CCCHHHHHHHHHHH
Q ss_conf 8999987410------1100--------01-213768899899999998627807-----82589-98899999988640
Q gi|254780332|r 280 RIISEQTEVP------SSKI--------RR-GELTRPDYEKIVACSQVMQKLPLY-----IDQTG-GISMSQLATRARRL 338 (504)
Q Consensus 280 R~is~~s~I~------~~~i--------~~-g~l~~~e~~~i~~a~~~l~~~~l~-----I~d~~-~~ti~~I~~~~r~~ 338 (504)
+-+|++-+=| ..+| +. .... ...+...++.+-|+...|- ++..| -+|=..-+...-.+
T Consensus 88 ~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAm 166 (316)
T COG0444 88 KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAM 166 (316)
T ss_pred CEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 56899974815644970349999999999851411-36899999999999769998789986198355871899999999
Q ss_pred CCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 22444746776713532566443211378899999999999988279199977138220168999984010143242233
Q gi|254780332|r 339 KRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ 418 (504)
Q Consensus 339 ~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq 418 (504)
.--..++++|-| .+.. .-+-..| +.|..-||.|.+|.+..++..+. | =|-+-+
T Consensus 167 al~~~P~LlIAD-----EPTT-ALDvtvQ--aqIl~ll~~l~~e~~~siilITH----------------D---l~vva~ 219 (316)
T COG0444 167 ALALNPKLLIAD-----EPTT-ALDVTVQ--AQILDLLKELQREKGTALILITH----------------D---LGVVAE 219 (316)
T ss_pred HHHCCCCEEEEC-----CCCC-HHHHHHH--HHHHHHHHHHHHHCCCEEEEEEC----------------C---HHHHHH
T ss_conf 985899889967-----9860-4519999--99999999999854978999948----------------8---899997
Q ss_pred HCCEEEEEE
Q ss_conf 138788972
Q gi|254780332|r 419 DADVVLFVI 427 (504)
Q Consensus 419 dAD~v~~l~ 427 (504)
-||-|+-+|
T Consensus 220 ~aDrv~VMY 228 (316)
T COG0444 220 IADRVAVMY 228 (316)
T ss_pred HCCEEEEEE
T ss_conf 456689987
No 396
>PRK13764 ATPase; Provisional
Probab=95.17 E-value=0.019 Score=38.18 Aligned_cols=32 Identities=44% Similarity=0.592 Sum_probs=25.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77267762131002769999999999851011
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKA 249 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~ 249 (504)
..+=+.|+|.||+|||+||..+|...+..++.
T Consensus 258 ~a~GilIaG~PGaGKsTfaqalA~~~~~~g~i 289 (605)
T PRK13764 258 RAEGILIAGAPGAGKSTFAQALAEFYADMGKI 289 (605)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 36649997799997789999999999847978
No 397
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.32 Score=28.78 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
.|+++---+++|+.+-|.|..|.|||+|+-.++
T Consensus 277 ~l~~vsf~v~~GEi~gi~G~nGsGKsTLl~~L~ 309 (513)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLF 309 (513)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 652335788688489974798865899999983
No 398
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.15 E-value=0.024 Score=37.34 Aligned_cols=41 Identities=37% Similarity=0.537 Sum_probs=28.4
Q ss_pred HHHHHH-HHHC-CCCEEEEECCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 377655-6416-7726776213100276999999999985101
Q gi|254780332|r 208 TLDKQM-GGLQ-RSDLIIIAGRPGMGKTSLATNIAYNVADAYK 248 (504)
Q Consensus 208 ~LD~~~-gGl~-~G~l~Viaarpg~GKTalalniA~~~A~~~~ 248 (504)
.|++.+ .-+. +.+=++|||.||+|||+||..+|.-.+.+++
T Consensus 250 ~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 250 GLSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred CCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8798999998864164699569999746899999999986696
No 399
>KOG0733 consensus
Probab=95.14 E-value=0.042 Score=35.51 Aligned_cols=30 Identities=40% Similarity=0.594 Sum_probs=24.6
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 641677267762131002769999999999
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
-|+.|..=+++-|.||+|||.||--+|-..
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 287799751644899864789999975212
No 400
>PRK04213 GTP-binding protein; Provisional
Probab=95.14 E-value=0.051 Score=34.82 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=15.2
Q ss_pred EEEEECCCHHHHHHHHHHH
Q ss_conf 6776213100276999999
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNI 239 (504)
Q Consensus 221 l~Viaarpg~GKTalalni 239 (504)
.+.|.|||.+|||+|.-.+
T Consensus 3 ~VaivGRpNVGKSTL~N~L 21 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRAL 21 (195)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7999769998899999999
No 401
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.33 Score=28.70 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHH--HH
Q ss_conf 7765564167726776213100276999999999985101112333332124797589995852---179998789--99
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRI--IS 283 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~--is 283 (504)
|+.+.--+.+|+=+-|-||+|+|||++..-++.+. ..+...+.+=..|+ +...+.+.+ +.
T Consensus 354 L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~---------------~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~ 418 (573)
T COG4987 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---------------DPQQGSITLNGVEIASLDEQALRETISVLT 418 (573)
T ss_pred HHCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCC---------------CCCCCEEEECCCCHHHCCHHHHHHHHHHHC
T ss_conf 10565132588768887799987899999997235---------------878873657886733188366899875412
Q ss_pred HHHHHCC----CCC--CCCCCCHHHHHHHHHHH---HHHH----HCCEEEECCC-CCCHHHHHH--HHHHHCCCCCCCEE
Q ss_conf 9874101----100--01213768899899999---9986----2780782589-988999999--88640224447467
Q gi|254780332|r 284 EQTEVPS----SKI--RRGELTRPDYEKIVACS---QVMQ----KLPLYIDQTG-GISMSQLAT--RARRLKRQRGLDLL 347 (504)
Q Consensus 284 ~~s~I~~----~~i--~~g~l~~~e~~~i~~a~---~~l~----~~~l~I~d~~-~~ti~~I~~--~~r~~~~~~gi~~v 347 (504)
+..++=. +++ -+++.++++...+.+.. +-+. .++-|+.+.. .+|=.|.+. .+|.+- ++-+++
T Consensus 419 Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL--~dapl~ 496 (573)
T COG4987 419 QRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL--HDAPLW 496 (573)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHH--CCCCEE
T ss_conf 321777778998773059999889999999981879998747353422222599747813899999999997--079868
Q ss_pred EEC
Q ss_conf 767
Q gi|254780332|r 348 IVD 350 (504)
Q Consensus 348 vID 350 (504)
+.|
T Consensus 497 lLD 499 (573)
T COG4987 497 LLD 499 (573)
T ss_pred EEC
T ss_conf 844
No 402
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=95.11 E-value=0.33 Score=28.68 Aligned_cols=181 Identities=20% Similarity=0.208 Sum_probs=91.6
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH-----HHHHHHH-----H
Q ss_conf 64167726776213100276999999999985101112333332124797589995852179-----9987899-----9
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE-----QLATRII-----S 283 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~-----el~~R~i-----s 283 (504)
-+.+.-.+.+++|++|+|=|++|.|+|+.++........ ......+.|..-+||+++-... +.-+|+. +
T Consensus 100 ~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~-L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 100 IAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVL-LVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred HHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 211032899996058866689999999998641487389-9976888761234307872145898860978760787778
Q ss_pred HHHHHCCC-CC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHH
Q ss_conf 98741011-00--------0121376889989999999862780782589988999999886402244474677671353
Q gi|254780332|r 284 EQTEVPSS-KI--------RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQL 354 (504)
Q Consensus 284 ~~s~I~~~-~i--------~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLql 354 (504)
+.+..+.. ++ ....+...+..++..-... ..++.|.|-|..-.+-.+ ++-..-+.=+++++ ..+
T Consensus 179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~~--~~~~vV~Dlp~~~~~~t~----~vL~~Sd~iviv~e-~sl 251 (366)
T COG4963 179 LLTRLASGLKLLAAPTELAKNYDLKTGAVERLLDLLRG--SFDFVVVDLPNIWTDWTR----QVLSGSDEIVIVAE-PSL 251 (366)
T ss_pred HHHCCCCCCEEECCCCCHHHHCCCCCCHHHHHHHHHHC--CCCEEEECCCCCCCHHHH----HHHHCCCEEEEEEC-CCH
T ss_conf 98616887633037744565215331269999997640--288389718976625899----99862884999963-638
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 256644321137889999999999998827919997713822016899998401014324223
Q gi|254780332|r 355 MTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIE 417 (504)
Q Consensus 355 i~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE 417 (504)
.. =| .-.+.-..||.+.....-|..++.|.+. .++|..+||-+.-.||
T Consensus 252 ~s-------lR--~ak~lld~l~~~r~~~~~p~lv~n~~~~------~~~~~~~dl~~~~~i~ 299 (366)
T COG4963 252 AS-------LR--NAKELLDELKRLRPNDPKPILVLNRVGV------PKRPEPSDLEEILGIE 299 (366)
T ss_pred HH-------HH--HHHHHHHHHHHHCCCCCCCEEEEEECCC------CCCCCHHHHHHHHCCC
T ss_conf 98-------99--9999999999737798895688652278------8899999998884884
No 403
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=95.09 E-value=0.33 Score=28.63 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 64432101377655641677267762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 200 AGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
.++.-|=..+..++.-|++|.|+|..|- -+-..+..+.. +... ....-++++-.+...+-..
T Consensus 243 ~~vvV~Am~v~N~L~~L~~GsLVITPGD----RsDIil~~~~a-~~~~-------------~~~agi~ltgg~~~~~~i~ 304 (702)
T PRK05632 243 RSVTVCARSIPNMLEHLKPGSLVVTPGD----RSDVILAACLA-AMNG-------------VPIAGLLLTGGYEPDPRIA 304 (702)
T ss_pred EEEEEEEEECHHHHHCCCCCCEEECCCC----HHHHHHHHHHH-HCCC-------------CCEEEEEECCCCCCCHHHH
T ss_conf 0499997005555610689957981685----78999999998-4169-------------9805999618989878999
Q ss_pred HHHHHH--HHHCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHH
Q ss_conf 899998--74101100-------------01213768899899999998627--------80782589988999999886
Q gi|254780332|r 280 RIISEQ--TEVPSSKI-------------RRGELTRPDYEKIVACSQVMQKL--------PLYIDQTGGISMSQLATRAR 336 (504)
Q Consensus 280 R~is~~--s~I~~~~i-------------~~g~l~~~e~~~i~~a~~~l~~~--------~l~I~d~~~~ti~~I~~~~r 336 (504)
|++... +++|.-.. .++.+..++.+++..+..-+.+. .+.......+|+.-.+-.+-
T Consensus 305 ~l~~~~~~~~lpil~~~~~t~~ta~~l~~~~~~i~~~~~~ki~~~~~~~~~~vd~~~l~~~~~~~~~~~~tP~~F~~~L~ 384 (702)
T PRK05632 305 KLCEGAFETGLPILSVDTNTYQTALRLQSFNLEVPVDDHERIETVLELVASHVDTDWLESRLATPRSRRLSPPAFRYQLT 384 (702)
T ss_pred HHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99986423898879956876999999974578789898999999999999737999999986577888859099999999
Q ss_pred HHCCCCCCCEEE
Q ss_conf 402244474677
Q gi|254780332|r 337 RLKRQRGLDLLI 348 (504)
Q Consensus 337 ~~~~~~gi~~vv 348 (504)
...++.+-.+|+
T Consensus 385 ~~Ar~~~krIVl 396 (702)
T PRK05632 385 ERARAAKKRIVL 396 (702)
T ss_pred HHHHHCCCEEEE
T ss_conf 999747987996
No 404
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.08 E-value=0.31 Score=28.83 Aligned_cols=171 Identities=19% Similarity=0.258 Sum_probs=85.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958---521799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~~ 285 (504)
|+++---+.||+.+.|.|++|.|||+++--++- .-. .+...|.+=-. +.+..++ .|.++..
T Consensus 481 l~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~G-l~~--------------p~~G~i~idg~~~~~~~~~~~-r~~i~~v 544 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQ--------------PTEGSVLLDGVDIRQIDPADL-RRNIGYV 544 (694)
T ss_pred HCCHHHEECCCCEEEEEECCCCCHHHHHHHHCC-CCC--------------CCCCEEEECCEECCCCCHHHH-HHHCEEE
T ss_conf 136311887997899980589878899998556-758--------------998879989854254999999-7302135
Q ss_pred HHHC-------CCCCC--CCCCCHHHHHHHH---HHHHHHHHCC----EEEECC-CCCCHHHH--HHHHHHHCCCCCCCE
Q ss_conf 7410-------11000--1213768899899---9999986278----078258-99889999--998864022444746
Q gi|254780332|r 286 TEVP-------SSKIR--RGELTRPDYEKIV---ACSQVMQKLP----LYIDQT-GGISMSQL--ATRARRLKRQRGLDL 346 (504)
Q Consensus 286 s~I~-------~~~i~--~g~l~~~e~~~i~---~a~~~l~~~~----l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~ 346 (504)
.+=+ ..+|. ++..++++..... ...+.+..+| -.|.+. .++|-.+- .+.+|.+. .++++
T Consensus 545 ~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~lp~g~~t~i~e~G~~LSgGqrQri~lARAl~--~~p~i 622 (694)
T TIGR03375 545 PQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL--RDPPI 622 (694)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 7677110746999984169999999999999981979999718566787746899946899999999999995--79998
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
++.| .+.+.- ++..+ ..|...|+.+.+ ++.+|..++ ||. .=++||-|+.|
T Consensus 623 lilD-----E~ts~L-D~~~e--~~i~~~l~~~~~--~~T~i~itH-----------rls---------~i~~aD~i~vl 672 (694)
T TIGR03375 623 LLLD-----EPTSAM-DNRSE--ERFKDRLKRWLA--GKTLVLVTH-----------RTS---------LLDLVDRIIVM 672 (694)
T ss_pred EEEE-----CCCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEEEC-----------CHH---------HHHHCCEEEEE
T ss_conf 9997-----875688-99999--999999998669--998999816-----------899---------99849999999
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
.
T Consensus 673 ~ 673 (694)
T TIGR03375 673 D 673 (694)
T ss_pred E
T ss_conf 8
No 405
>PRK06851 hypothetical protein; Provisional
Probab=95.08 E-value=0.33 Score=28.62 Aligned_cols=42 Identities=21% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCCC-HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3210-1377655641677267762131002769999999999851
Q gi|254780332|r 203 STGI-QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 203 ~TG~-~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
|-|+ .-++.++.++.. .++|-||||.|||++.-.++..+..+
T Consensus 200 P~G~v~~i~~l~~~~~~--~y~ikG~pGtGKstlL~~i~~~A~~~ 242 (368)
T PRK06851 200 PKGAVDHVPSLTEGVKN--RYFLKGRPGTGKSTMLKKVAKAAEER 242 (368)
T ss_pred CCCHHHHHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99645147878606786--99981899987799999999999985
No 406
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.08 E-value=0.039 Score=35.68 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=32.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRI 281 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~ 281 (504)
+=.++.|.||.|||-||..||..+.. +|+.|+|+|. .++..++
T Consensus 184 ~nLlf~G~~G~GKTfLa~~IA~ell~---------------~g~sViy~ta----~~L~~~l 226 (330)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD---------------RGKTVIYRTS----DELIENL 226 (330)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH----HHHHHHH
T ss_conf 86698899999889999999999998---------------7994999629----9999999
No 407
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.07 E-value=0.34 Score=28.60 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=80.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCEEEEEE------CCCCHHH
Q ss_conf 137765564167726776213100276999999999985101112333332124----797589995------8521799
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI----NGGIVGFYS------LEMSSEQ 276 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~----~g~~Vl~fS------lEMs~~e 276 (504)
+.|+.+.--+.+|+.+.|.|+-|.|||++.--+ .................... ....+.|.. ..|+..|
T Consensus 16 ~aL~~is~~i~~Gei~~llG~NGaGKSTLl~~i-~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e 94 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKML-TGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 898440889849959999989997399999999-6698788997799999776588988605699923565687887999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEE--EECC-CCCCHHHHH--HHHHHHCCCCCCCEEEEC
Q ss_conf 98789999874101100012137688-99899999998627807--8258-998899999--988640224447467767
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLY--IDQT-GGISMSQLA--TRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvID 350 (504)
.. ++.+...+ ++..+ ..++....+. ..|. .+.. ..+|-.+-+ +.+|.+. +++++++.|
T Consensus 95 ~l-~~~~~~~g----------~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~P~lliLD 158 (220)
T cd03263 95 HL-RFYARLKG----------LPKSEIKEEVELLLRV---LGLTDKANKRARTLSGGMKRKLSLAIALI--GGPSVLLLD 158 (220)
T ss_pred HH-HHHHHHCC----------CCHHHHHHHHHHHHHH---CCCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 99-99897569----------9989999999999987---69677750757678999999999999995--699999995
Q ss_pred CHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 351 YIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 351 YLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
.|... -+. ....++..-|+.+.+ +..||..++ | -..++.-||-|++|+.
T Consensus 159 -----EPt~g-LD~--~~~~~i~~~l~~~~~--~~tii~~tH----------------~---l~e~~~l~dri~vl~~ 207 (220)
T cd03263 159 -----EPTSG-LDP--ASRRAIWDLILEVRK--GRSIILTTH----------------S---MDEAEALCDRIAIMSD 207 (220)
T ss_pred -----CCCCC-CCH--HHHHHHHHHHHHHHC--CCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf -----88768-899--999999999999848--998999968----------------7---8999996999999989
No 408
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.07 E-value=0.017 Score=38.50 Aligned_cols=73 Identities=25% Similarity=0.375 Sum_probs=43.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 677621310027699999999998510111233333212479758999585-2179998789999874101100012137
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE-MSSEQLATRIISEQTEVPSSKIRRGELT 299 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE-Ms~~el~~R~is~~s~I~~~~i~~g~l~ 299 (504)
+++|+|.||.||||.|-.+|.+. ||+ -|+- --|=+|...|.+........=+
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~L-------------------------sl~~iSaG--~iRelA~~~Gldl~E~~~aee~ 54 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-------------------------SLKLISAG--DIRELAEKMGLDLAESKYAEEN 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-------------------------CCCEECCC--HHHHHHHHCCCCHHHHHHHCCC
T ss_conf 78873589686478999999863-------------------------98312020--0788986429887773443058
Q ss_pred HHHH-HHHHHHHHHHH--HCCEEEE
Q ss_conf 6889-98999999986--2780782
Q gi|254780332|r 300 RPDY-EKIVACSQVMQ--KLPLYID 321 (504)
Q Consensus 300 ~~e~-~~i~~a~~~l~--~~~l~I~ 321 (504)
+ |. +.+.+...++. +.++.++
T Consensus 55 ~-eIDk~iD~~~~E~A~~~~nvvlE 78 (173)
T TIGR02173 55 P-EIDKKIDRRIREIAEKEKNVVLE 78 (173)
T ss_pred C-CCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 6-31167537885543048966885
No 409
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.06 E-value=0.32 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
++.+---+.+|+..-|-|.+|+|||++++-+.
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~ 56 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALM 56 (539)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 42424786489589998689888899999985
No 410
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.25 Score=29.59 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
|...+.|..|.+ ++|.|+||.|||+.+..++...
T Consensus 33 l~~~~~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 33 LAPALRGERPSN-IIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred HHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHH
T ss_conf 999855899860-7998899987328999999999
No 411
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=95.00 E-value=0.029 Score=36.74 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHCCCCC--CCEEEECCHHHCC
Q ss_conf 9889999998864022444--7467767135325
Q gi|254780332|r 325 GISMSQLATRARRLKRQRG--LDLLIVDYIQLMT 356 (504)
Q Consensus 325 ~~ti~~I~~~~r~~~~~~g--i~~vvIDYLqli~ 356 (504)
.+++.|-...+..+. .+| ++.|||= |++.
T Consensus 238 ~~~l~E~~R~~~~L~-~Y~~~~~~vIvN--~vLP 268 (330)
T TIGR00345 238 KMSLYESERAHKELK-KYGIKVDAVIVN--QVLP 268 (330)
T ss_pred CCCHHHHHHHHHHHH-HCCCCCCEEEEC--CCCC
T ss_conf 242789999999998-649850447870--2257
No 412
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.99 E-value=0.35 Score=28.45 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 13768899899999
Q gi|254780332|r 297 ELTRPDYEKIVACS 310 (504)
Q Consensus 297 ~l~~~e~~~i~~a~ 310 (504)
+|+.++|+.+.+..
T Consensus 459 ~L~~~~f~~vl~~l 472 (878)
T PRK13767 459 DLSDEDFESVLRYL 472 (878)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 79999999999998
No 413
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.35 Score=28.44 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 101377655641677267762131002769999999
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
.|..++++---++.|+++.+-|..|.|||++.--||
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 542114631550688689997789876788999985
No 414
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.99 E-value=0.2 Score=30.23 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------CCCCCEEEE------EECC
Q ss_conf 01377655641677267762131002769999999999851011123333321--------247975899------9585
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYK--------TINGGIVGF------YSLE 271 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~--------~~~g~~Vl~------fSlE 271 (504)
+...|.+---+++|+-.-|.|.+|+|||+|++-+..=....+.....-..... +...--|+| +|.-
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EEEECCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCEEEEECCCCCCCCC
T ss_conf 07752543675389767777058898115999998524768638978811666485662035552269971787778843
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCC--E--EEECCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 21799987899998741011000121376889-98999999986278--0--7825899889999998864022444746
Q gi|254780332|r 272 MSSEQLATRIISEQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLP--L--YIDQTGGISMSQLATRARRLKRQRGLDL 346 (504)
Q Consensus 272 Ms~~el~~R~is~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~--l--~I~d~~~~ti~~I~~~~r~~~~~~gi~~ 346 (504)
|+-.||..-=+ .+..+.++..|. +++..|..+..=-| . |=.+.++ ---+=.+.+|.+.. ++.+
T Consensus 380 mtV~qII~EGL---------~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG-GQRQRIAIARAliL--kP~~ 447 (534)
T COG4172 380 MTVGQIIEEGL---------RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG-GQRQRIAIARALIL--KPEL 447 (534)
T ss_pred CCHHHHHHHHH---------HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC-CHHHHHHHHHHHHC--CCCE
T ss_conf 48999864214---------115878987889999999999829994575238865686-22458999999863--8747
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7767135325664432113788999999999999882791999771
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
|+.| .+.+.-..+-+ +.|-.-||.|-++++..-+-.|.
T Consensus 448 i~LD-----EPTSALD~SVQ---aQvv~LLr~LQ~k~~LsYLFISH 485 (534)
T COG4172 448 ILLD-----EPTSALDRSVQ---AQVLDLLRDLQQKHGLSYLFISH 485 (534)
T ss_pred EEEC-----CCCHHHHHHHH---HHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 9955-----98527668899---99999999999974975899805
No 415
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=94.98 E-value=0.049 Score=34.96 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67762131002769999999999851
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
.++|-|.||+|||+|+-.+|...|..
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g 27 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQG 27 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 89998279898999999999999869
No 416
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.97 E-value=0.048 Score=35.06 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=33.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 6776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
.+.|.|.-|+|||+.+.|+|...|. .|++|+++-+.....
T Consensus 3 ~Iai~GKGGVGKTTtavNLA~aLa~---------------~GkkVlliDaDpq~~ 42 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAE---------------MGKKVMIVGCDPKAD 42 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEECCCCCCC
T ss_conf 8999799857789999999999998---------------799499986579985
No 417
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.1 Score=32.50 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCC-C-EEEEEECCC-----------CHHHHHHHHHHH
Q ss_conf 726776213100276999999999985101112333-33212479-7-589995852-----------179998789999
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD-GSYKTING-G-IVGFYSLEM-----------SSEQLATRIISE 284 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~-~~~~~~~g-~-~Vl~fSlEM-----------s~~el~~R~is~ 284 (504)
.+-+++.|.+|+||++||..+|..+.-....+.... +......| + .+.+++.+- +-+|+ ..++..
T Consensus 26 ~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~Idqi-R~l~~~ 104 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQV-REISQK 104 (319)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHH-HHHHHH
T ss_conf 2068758999878999999999998379979765433889996689989687753444454311234869999-999999
Q ss_pred HHHHCC---CCC---CCC-CCCHHHHHHHHHHHHHHHHCCEE--EECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH
Q ss_conf 874101---100---012-13768899899999998627807--8258998899999988640224447467767135
Q gi|254780332|r 285 QTEVPS---SKI---RRG-ELTRPDYEKIVACSQVMQKLPLY--IDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 285 ~s~I~~---~~i---~~g-~l~~~e~~~i~~a~~~l~~~~l~--I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq 353 (504)
.+.-|. .++ ... .++.+-+..+.+..++-...-++ +.+.+..=+..|+++|+++.-+....--+.+||+
T Consensus 105 ~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~TI~SRCq~~~~~~p~~~~~~~~L~ 182 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred HHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHH
T ss_conf 613720279569998066752899999999982279988489998699365824776485011189969999999999
No 418
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=94.85 E-value=0.052 Score=34.79 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=32.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 6776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
.+.|.|.-|+|||+.+.|+|...|. .|++|+.+-+.....
T Consensus 2 ~iai~GKGGVGKTTtsvNLA~aLA~---------------~GkrVlliDaD~~~~ 41 (269)
T pfam00142 2 KIAIYGKGGIGKSTTSQNTSAALAE---------------MGKKVLIVGCDPKAD 41 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEECCCCCCC
T ss_conf 5899899976889999999999998---------------799099984589987
No 419
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.84 E-value=0.14 Score=31.52 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=52.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789999874101100012137
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT 299 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~ 299 (504)
-.+-|+|.||.|||++...+..+... .+++..+.-..-.++=+.|+... .+++...+.+|+.=
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~----------------~~~~aVI~~Di~t~~Da~~l~~~-~g~~i~~v~TG~~C 76 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKD----------------EYKIAVITGDIYTKEDADRLRKL-PGEPIIGVETGKGC 76 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH----------------HCCEEEEECEEECHHHHHHHHHC-CCCEEEEECCCCCC
T ss_conf 89996179986789999999999975----------------27768996404006559999737-79806874038765
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 68899899999998627
Q gi|254780332|r 300 RPDYEKIVACSQVMQKL 316 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~ 316 (504)
.++-.-+..++.++..+
T Consensus 77 H~da~m~~~ai~~l~~~ 93 (202)
T COG0378 77 HLDASMNLEAIEELVLD 93 (202)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 88678899999998631
No 420
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=94.83 E-value=0.37 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEE----CCCCCCCCCC
Q ss_conf 999999999882791999771----3822016899
Q gi|254780332|r 372 ITMALKALAKELNIPIIALSQ----LSRQVENRDN 402 (504)
Q Consensus 372 is~~lK~lA~e~~ipvi~lsQ----LnR~~e~r~~ 402 (504)
.-+.++..|+ -+.||++.|= |.|.....++
T Consensus 312 l~~~I~~~~~-~G~pi~aeCGG~~~Lg~~i~d~~G 345 (451)
T PRK01077 312 MRASIRAAAA-AGKPIYAECGGLMYLGESLEDADG 345 (451)
T ss_pred HHHHHHHHHH-CCCCEEEECHHHHHHHHHCCCCCC
T ss_conf 9999999998-699789987117887543277899
No 421
>PRK10490 sensor protein KdpD; Provisional
Probab=94.81 E-value=0.21 Score=30.19 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 52179998789999874
Q gi|254780332|r 271 EMSSEQLATRIISEQTE 287 (504)
Q Consensus 271 EMs~~el~~R~is~~s~ 287 (504)
++..+++-.=++++.|+
T Consensus 657 ~aE~ErLRsalLssVSH 673 (895)
T PRK10490 657 ASEREQLRNALLAALSH 673 (895)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 77777899999986034
No 422
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.80 E-value=0.041 Score=35.59 Aligned_cols=44 Identities=27% Similarity=0.469 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4321013776556416772-677621310027699999999998510
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSD-LIIIAGRPGMGKTSLATNIAYNVADAY 247 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~-l~Viaarpg~GKTalalniA~~~A~~~ 247 (504)
+.||++.+|-++- +.+|+ +-|+|| +|+|||+++..++.|+|+.+
T Consensus 129 l~TGIkaID~l~p-igkGqrigIfgg-aGvGKTvLl~eli~n~a~~~ 173 (466)
T PRK09280 129 LETGIKVIDLLAP-YAKGGKIGLFGG-AGVGKTVLIMELINNIAKEH 173 (466)
T ss_pred CCCCCHHHHCCCC-CCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHC
T ss_conf 0018132223167-137747985579-99980089999999999865
No 423
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.79 E-value=0.097 Score=32.72 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHH-HC-CCCCCCCCCCHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 3433677899999874-11-23664432101377655641--67726776213100276999999999985101112333
Q gi|254780332|r 179 SDAMTVAIDMAGQAFN-RD-GRLAGVSTGIQTLDKQMGGL--QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD 254 (504)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~~-~~~~Gi~TG~~~LD~~~gGl--~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~ 254 (504)
.+.+..+...+-+... +. ..+.|-. ..+.+++.-| +..+=-|+-|-||+||||++--+|..++... .|.
T Consensus 167 ~~~L~ky~~dLt~~A~~gklDPvIGRd---~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~rI~~g~-VP~--- 239 (852)
T TIGR03345 167 TSALDQYTTDLTAQAREGKIDPVLGRD---DEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGD-VPP--- 239 (852)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCC-CCH---
T ss_conf 448999978899999839999886949---9999999999862479974657999879999999999997699-986---
Q ss_pred CCCCCCCCCEEEEEECCCCHH--------HHHHHHHHHHHH
Q ss_conf 332124797589995852179--------998789999874
Q gi|254780332|r 255 GSYKTINGGIVGFYSLEMSSE--------QLATRIISEQTE 287 (504)
Q Consensus 255 ~~~~~~~g~~Vl~fSlEMs~~--------el~~R~is~~s~ 287 (504)
.- +..-+|||.|+.- +.-.|+-+.+..
T Consensus 240 ----~L--~~~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~e 274 (852)
T TIGR03345 240 ----AL--RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDE 274 (852)
T ss_pred ----HH--HCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf ----77--438567867888864035763599999999999
No 424
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.79 E-value=0.36 Score=28.38 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
...||.+.--+++|+++-+.|+-|.|||++.--++
T Consensus 15 ~~al~~vsf~v~~Gei~gllGpNGAGKTTl~~~l~ 49 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99973606788598199999999981999999996
No 425
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.043 Score=35.38 Aligned_cols=147 Identities=27% Similarity=0.443 Sum_probs=74.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 77621310027699999999998510111233333212479758-99958521799987899998741011000121---
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQTEVPSSKIRRGE--- 297 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~s~I~~~~i~~g~--- 297 (504)
+.|.|+||+|||++++-+|.-... .|.+| .|++-|+... .. ..|...-.|.+|+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~---------------~g~kvgGf~t~EVR~g--Gk-----R~GF~Ivdl~tg~~~~ 65 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLRE---------------KGYKVGGFITPEVREG--GK-----RIGFKIVDLATGEEGI 65 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEEEEEECC--CE-----EEEEEEEECCCCCEEE
T ss_conf 998679984589999999999985---------------5966513983114208--82-----7515999814795579
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH-HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3768899899999998627807825899889999998-864022444746776713532566443211378899999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATR-ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMAL 376 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~-~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~l 376 (504)
|..... .-..+.++-..+++ .++|... +++.. + .-|+||||=++-|.-.++.- ..++.++
T Consensus 66 la~~~~-----~~~rvGkY~V~v~~-----le~i~~~al~rA~-~-~aDvIIIDEIGpMElks~~f---~~~ve~v---- 126 (179)
T COG1618 66 LARVGF-----SRPRVGKYGVNVEG-----LEEIAIPALRRAL-E-EADVIIIDEIGPMELKSKKF---REAVEEV---- 126 (179)
T ss_pred EEECCC-----CCCCCCEEEEEHHH-----HHHHHHHHHHHHH-H-CCCEEEEECCCCHHHCCHHH---HHHHHHH----
T ss_conf 888478-----87621047862788-----8998689999886-3-49989994336330200889---9999999----
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 99998827919997713822016899998401014324223313878897
Q gi|254780332|r 377 KALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
..-+-|+|+.-. | ...-|.+..+|.-| +++.|+
T Consensus 127 ----l~~~kpliatlH--r-----rsr~P~v~~ik~~~------~v~v~l 159 (179)
T COG1618 127 ----LKSGKPLIATLH--R-----RSRHPLVQRIKKLG------GVYVFL 159 (179)
T ss_pred ----HCCCCCEEEEEE--C-----CCCCHHHHHHHHCC------CEEEEE
T ss_conf ----658993799996--2-----56775899864248------779997
No 426
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=94.77 E-value=0.4 Score=28.04 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCC--CCC---HHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 1376889989999999862780782589--988---99999988640224447467767
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTG--GIS---MSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~t---i~~I~~~~r~~~~~~gi~~vvID 350 (504)
.|+-.+..++.-|..-..+-++.|.|.| ++. -.+|...+++++.+ |.-+|+|-
T Consensus 395 ~LSGGq~Qrv~iAraL~~~p~lLilDEPT~GLD~~~~~~i~~ll~~l~~~-G~til~is 452 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAD-GLSIILVS 452 (501)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 09999999999999997299889997986689999999999999999967-99999991
No 427
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=94.76 E-value=0.4 Score=28.00 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=78.1
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH---------------
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878---------------
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR--------------- 280 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R--------------- 280 (504)
+++|+..=|+|=-|.|+|.++.-+.= +.. ...-....+|++|-+-| +.+.+..-
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG--~~~------~~~G~i~l~G~~v~~~s---p~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFG--ARP------ASSGEILLDGKPVRIRS---PRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC--CCC------CCCCEEEECCEECCCCC---HHHHHHCCCEECCCCCCCCCCCC
T ss_conf 70784878840666788999999828--986------77746999999825899---99999719886776544276737
Q ss_pred HHHHHHHHCCC---CCCCC-CCCH-HHHHHHHHHHHHHHHCCEEEEC--CC--CCCH-HHHH-HHHHHHCCCCCCCEEEE
Q ss_conf 99998741011---00012-1376-8899899999998627807825--89--9889-9999-98864022444746776
Q gi|254780332|r 281 IISEQTEVPSS---KIRRG-ELTR-PDYEKIVACSQVMQKLPLYIDQ--TG--GISM-SQLA-TRARRLKRQRGLDLLIV 349 (504)
Q Consensus 281 ~is~~s~I~~~---~i~~g-~l~~-~e~~~i~~a~~~l~~~~l~I~d--~~--~~ti-~~I~-~~~r~~~~~~gi~~vvI 349 (504)
..|..-++.+. ++.++ -++. .|.....+....+ .+-..+ .+ .+|= +|=+ -.+|.+. .+++++++
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l---~Ik~~s~~~~v~~LSGGNQQKVvlarwL~--~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL---RIKTPSPEQPIGTLSGGNQQKVVLARWLA--TDPKVLIL 425 (500)
T ss_pred CCCHHHHEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHC---CCCCCCCCCHHHCCCCHHHHHHHHHHHHH--HCCCEEEE
T ss_conf 88399963068656432364347189999999999961---83668833611107736566999999997--58999998
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
| .|.....- -+=.+|.+-+..||++ +++|+..|- || -.+-.-||-|+-++
T Consensus 426 D-----EPTRGIDV---GAK~eIy~li~~lA~~-G~ail~iSS----------------El---pEll~~~DRIlVm~ 475 (500)
T COG1129 426 D-----EPTRGIDV---GAKAEIYRLIRELAAE-GKAILMISS----------------EL---PELLGLSDRILVMR 475 (500)
T ss_pred C-----CCCCCCCC---CHHHHHHHHHHHHHHC-CCEEEEEEC----------------CH---HHHHHHCCEEEEEE
T ss_conf 8-----99877541---4589999999999977-998999949----------------75---99884097799998
No 428
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.73 E-value=0.41 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 013776556416772677621310027699
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSL 235 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTal 235 (504)
|..|+++---+.+|+.+-|-|+-|.|||||
T Consensus 37 f~ALknVSFeV~kGE~vGIIG~NGAGKSTL 66 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIVGLNGSGKSTL 66 (549)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHH
T ss_conf 773407257864898999988999989999
No 429
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.72 E-value=0.05 Score=34.88 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=56.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 6776213100276999999999985101112333332124797589995852179998789999874101100012137-
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT- 299 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~- 299 (504)
++-|+|.+|.|||+||-.++..... +|..|.++|++-=-. .| .......+++.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~---------------~~~~~~vis~D~yy~---~~--------~~~~~~~~n~D~ 54 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV---------------NGIGPVVISLDDYYV---PR--------KTPRDEDGNYDF 54 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCC---CC--------CCCCCCCCCCCC
T ss_conf 9899898977899999999999846---------------488539995466645---76--------520001468898
Q ss_pred --HHHHHHHHHHHHHHHHCC-E--EEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf --688998999999986278-0--78258998899999988640224447467767135325
Q gi|254780332|r 300 --RPDYEKIVACSQVMQKLP-L--YIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 300 --~~e~~~i~~a~~~l~~~~-l--~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
.-+++.+.+....|.+.. + -++|...-+.. .-..+ .-..-++|||.-+.++.
T Consensus 55 p~a~d~~ll~~~L~~L~~g~~v~~P~YDf~t~~r~----~~~~~-~~~p~~vIIvEGi~~l~ 111 (179)
T cd02028 55 ESILDLDLLNKNLHDLLNGKEVELPIYDFRTGKRR----GYRKL-KLPPSGVVILEGIYALN 111 (179)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC----CCCEE-EECCCCEEEEECHHHCC
T ss_conf 13534999999999997799557542004378606----98059-60899789992434389
No 430
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=94.61 E-value=0.088 Score=33.01 Aligned_cols=139 Identities=19% Similarity=0.358 Sum_probs=85.6
Q ss_pred CEEEE-ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC-----
Q ss_conf 26776-213100276999999999985101112333332124797589995852179998789999874101100-----
Q gi|254780332|r 220 DLIII-AGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKI----- 293 (504)
Q Consensus 220 ~l~Vi-aarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i----- 293 (504)
..+|| .|--|+||||..=|++...|.. |++|+.+=.. +..|-+=..-|.+.+-+
T Consensus 2 ~viViTSGKGGVGKTTtTANlG~aLA~l---------------G~kVvliD~D-----iGLRNLD~~lGLEnRivYt~vD 61 (272)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARL---------------GKKVVLIDAD-----IGLRNLDLLLGLENRIVYTLVD 61 (272)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHC---------------CCEEEEEECC-----CCCHHHHHHHCCCHHHHHHHHH
T ss_conf 5899981788977358989999999961---------------9828999547-----5703457774231035453554
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHC-CEEE------ECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH
Q ss_conf -01213768899899999998627-8078------258998899999988640224447467767135325664432113
Q gi|254780332|r 294 -RRGELTRPDYEKIVACSQVMQKL-PLYI------DQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504)
Q Consensus 294 -~~g~l~~~e~~~i~~a~~~l~~~-~l~I------~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504)
..|+ -++.+|.=+=+.+ |||+ -|.-.++.+++...+..++.+.+-|.|+|| .|++=
T Consensus 62 VveG~------C~l~qALikDKr~~NL~LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviID-----cPAGI----- 125 (272)
T TIGR01968 62 VVEGE------CRLQQALIKDKRLENLYLLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIID-----CPAGI----- 125 (272)
T ss_pred HHCCC------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE-----CCCCH-----
T ss_conf 32484------211001001267523566365302361346977899999998543793079973-----78774-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7889999999999998827919997713822016899998401014324
Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG 414 (504)
Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg 414 (504)
=++.+.-.--=+=.||+.. |-+|-+|||.
T Consensus 126 -------E~GF~nAv~~Ad~AiVVtt-------------PEvsavRDAD 154 (272)
T TIGR01968 126 -------ESGFRNAVAPADEAIVVTT-------------PEVSAVRDAD 154 (272)
T ss_pred -------HHHHHHHHHHCCEEEEEEC-------------CCCCCHHHHH
T ss_conf -------3568998752683589877-------------8745100255
No 431
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.61 E-value=0.25 Score=29.58 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995---852179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~ 281 (504)
+...+|+..--+.+|+++|+-|.+|+|||+. |-|........ -..+.+.- .+++..++-.++
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTt-LkMINrLiept--------------~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTT-LKMINRLIEPT--------------SGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CCEEEEEEEEEECCCEEEEEECCCCCCHHHH-HHHHHCCCCCC--------------CCEEEECCEECCCCCHHHHHHHH
T ss_conf 7323322257765972899987899757879-99996055888--------------85389899044658889998753
Q ss_pred H---HHHHHHCCCCCCCC-----CCCHHHHHHHHHHHHHHHH---C-C-EEEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf 9---99874101100012-----1376889989999999862---7-8-0782589-988--999999886402244474
Q gi|254780332|r 282 I---SEQTEVPSSKIRRG-----ELTRPDYEKIVACSQVMQK---L-P-LYIDQTG-GIS--MSQLATRARRLKRQRGLD 345 (504)
Q Consensus 282 i---s~~s~I~~~~i~~g-----~l~~~e~~~i~~a~~~l~~---~-~-l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~ 345 (504)
= ..++=.|...+... +|..-+.+++.+-..++-. + | -|-+-.| -+| -.+=...+|.+.. .++
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa--dP~ 155 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA--DPP 155 (309)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCHHHHHHHHHHHHC--CCC
T ss_conf 354222156776359877876155417798999999999999849897897320922218621358889999741--988
Q ss_pred EEEECCHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 677671353256644-32113788999999999999882791999771
Q gi|254780332|r 346 LLIVDYIQLMTTSKK-IEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 346 ~vvIDYLqli~~~~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
++.-| .+=+. ..-+|. .+-..+|.|-++++-.||.++.
T Consensus 156 ilLMD-----EPFgALDpI~R~----~lQ~e~~~lq~~l~kTivfVTH 194 (309)
T COG1125 156 ILLMD-----EPFGALDPITRK----QLQEEIKELQKELGKTIVFVTH 194 (309)
T ss_pred EEEEC-----CCCCCCCHHHHH----HHHHHHHHHHHHHCCEEEEEEC
T ss_conf 68634-----885544765499----9999999999985987999935
No 432
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=94.58 E-value=0.051 Score=34.85 Aligned_cols=29 Identities=34% Similarity=0.638 Sum_probs=24.5
Q ss_pred CCCC-EEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 6772-6776213100276999999999985
Q gi|254780332|r 217 QRSD-LIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 217 ~~G~-l~Viaarpg~GKTalalniA~~~A~ 245 (504)
..|- ...+-|+||+|||++|-.||...-+
T Consensus 447 ~~GpqIlClvGPPGVGKTSlg~SIA~ALnR 476 (941)
T TIGR00763 447 MKGPQILCLVGPPGVGKTSLGKSIAKALNR 476 (941)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 888767872072695422278999999688
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.58 E-value=0.35 Score=28.42 Aligned_cols=175 Identities=19% Similarity=0.280 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-C-CH-HHH-HHHH
Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585-2-17-999-8789
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE-M-SS-EQL-ATRI 281 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE-M-s~-~el-~~R~ 281 (504)
+.-|+.+.--+.+|++++|-|++|+|||+|.-.+.. .. ...+| .+. +--+ . .. +-. ..|-
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~--LE------------~~~~G-~I~-i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG--LE------------EPDSG-SIT-VDGEDVGDKKDILKLRRK 78 (240)
T ss_pred EEEECCCCEEECCCCEEEEECCCCCCHHHHHHHHHC--CC------------CCCCC-EEE-ECCEECCCHHHHHHHHHH
T ss_conf 177648511673897899989999988899999977--86------------88786-499-998722545469999985
Q ss_pred H-------------HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE--EECCC-CCC--HHHHHHHHHHHCCCCC
Q ss_conf 9-------------9987410110001213768899899999998627807--82589-988--9999998864022444
Q gi|254780332|r 282 I-------------SEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY--IDQTG-GIS--MSQLATRARRLKRQRG 343 (504)
Q Consensus 282 i-------------s~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~--I~d~~-~~t--i~~I~~~~r~~~~~~g 343 (504)
+ +..-+|-..-+.-..++..| .-..|...|....|- -+..| .+| -.|=.+.+|.+.. .
T Consensus 79 vGmVFQ~fnLFPH~TvleNv~lap~~v~~~~k~e--A~~~A~~lL~~VGL~dka~~yP~qLSGGQqQRVAIARALaM--~ 154 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE--AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM--D 154 (240)
T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHCC--C
T ss_conf 5766246654655329888777539972989999--99999999998695566653951048078899999998717--9
Q ss_pred CCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEE
Q ss_conf 74677671353256644321137889999999999998827919997713822016899998401014324223313878
Q gi|254780332|r 344 LDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVV 423 (504)
Q Consensus 344 i~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v 423 (504)
++++..| .+.+.- + -+-++++-.-+|.||+|= ...|++.. |-|-...-||-|
T Consensus 155 P~vmLFD-----EPTSAL-D--PElv~EVL~vm~~LA~eG-mTMivVTH-------------------EM~FAr~Vadrv 206 (240)
T COG1126 155 PKVMLFD-----EPTSAL-D--PELVGEVLDVMKDLAEEG-MTMIIVTH-------------------EMGFAREVADRV 206 (240)
T ss_pred CCEEEEC-----CCCCCC-C--HHHHHHHHHHHHHHHHCC-CEEEEEEC-------------------HHHHHHHHHHEE
T ss_conf 9888636-----975437-9--889999999999999769-86999950-------------------367999862228
Q ss_pred EEEEC
Q ss_conf 89725
Q gi|254780332|r 424 LFVIR 428 (504)
Q Consensus 424 ~~l~R 428 (504)
+|+..
T Consensus 207 iFmd~ 211 (240)
T COG1126 207 IFMDQ 211 (240)
T ss_pred EEEEC
T ss_conf 99528
No 434
>PRK08233 hypothetical protein; Provisional
Probab=94.56 E-value=0.14 Score=31.46 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=20.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 7267762131002769999999999
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~ 243 (504)
.-++-|||.+|.|||+|+-.++...
T Consensus 3 p~IIgIaGgSgSGKTtla~~l~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8899996888678999999999974
No 435
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.44 Score=27.68 Aligned_cols=142 Identities=24% Similarity=0.304 Sum_probs=76.8
Q ss_pred EEEECCCH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH---HHHHHHCC--C
Q ss_conf 77621310-----02769999999999851011123333321247975899958521799987899---99874101--1
Q gi|254780332|r 222 IIIAGRPG-----MGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRII---SEQTEVPS--S 291 (504)
Q Consensus 222 ~Viaarpg-----~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~i---s~~s~I~~--~ 291 (504)
+|.+.|-| ..||.-.+..|.+.... ...+|..|||.+.- ..+.+.+ |..+|..+ .
T Consensus 30 fIf~~RngihIIDL~kT~~~l~~A~~~v~~-----------~~~~~g~ILfVgTK----~~a~~~V~~~A~r~g~~yV~~ 94 (252)
T COG0052 30 FIFGERNGIHIIDLQKTLERLREAYKFLRR-----------IAANGGKILFVGTK----KQAQEPVKEFAERTGAYYVNG 94 (252)
T ss_pred CCEEECCCCEEEEHHHHHHHHHHHHHHHHH-----------HHCCCCEEEEEECH----HHHHHHHHHHHHHHCCCEECC
T ss_conf 500002771798799989999999999999-----------97289979999520----887899999999959951327
Q ss_pred CCCCCCCCH--HHHHHHHHHH--HHHHHCCEEEECCCCCCHHHHHHHHHHHCCCC-------C-CCEEEE-CCHHHCCCC
Q ss_conf 000121376--8899899999--99862780782589988999999886402244-------4-746776-713532566
Q gi|254780332|r 292 KIRRGELTR--PDYEKIVACS--QVMQKLPLYIDQTGGISMSQLATRARRLKRQR-------G-LDLLIV-DYIQLMTTS 358 (504)
Q Consensus 292 ~i~~g~l~~--~e~~~i~~a~--~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~-------g-i~~vvI-DYLqli~~~ 358 (504)
+..-|.||. .-...+.+.. +.+.+.. ++.-+..-.-.+.....++.+-. + +|++|| | +
T Consensus 95 RwLgG~LTN~~ti~~si~rl~~lE~~~~~~--~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViD------p- 165 (252)
T COG0052 95 RWLGGMLTNFKTIRKSIKRLKELEKMEEDG--FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVID------P- 165 (252)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEC------C-
T ss_conf 643742447405888999999999876414--3210078888777789999874014111267999899968------8-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 44321137889999999999998827919997713822016
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
.+ -.++|.+ |+.++||||+++--|-..+.
T Consensus 166 ~~----e~iAv~E--------A~klgIPVvAlvDTn~dpd~ 194 (252)
T COG0052 166 RK----EKIAVKE--------ANKLGIPVVALVDTNCDPDG 194 (252)
T ss_pred CH----HHHHHHH--------HHHCCCCEEEEECCCCCCCC
T ss_conf 17----6899999--------99759998998418999765
No 436
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=94.56 E-value=0.11 Score=32.35 Aligned_cols=66 Identities=23% Similarity=0.474 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC-------------------CCCCCCCCCCHHHHHHHHH--HC-CCC----EEEEE
Q ss_conf 6654301343367789999987411-------------------2366443210137765564--16-772----67762
Q gi|254780332|r 172 DGGFHTFSDAMTVAIDMAGQAFNRD-------------------GRLAGVSTGIQTLDKQMGG--LQ-RSD----LIIIA 225 (504)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~Gi~TG~~~LD~~~gG--l~-~G~----l~Via 225 (504)
++.-.++.++++..++.++++.+.. ....| +.|..+.+..+. .. ++. .+.|-
T Consensus 208 Dss~l~~eevvd~i~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~VAIV 285 (714)
T PRK09518 208 DTSDLDFAETLDLLIGLIEDAIENQEYEQYAANLEGYELDEGDEDLISG--RGFTSDEEAFGNAGALKAGPEPVGTVAIV 285 (714)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC--CCHHHHHHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 6898979999999999998754333444321142100123330232047--74233234422455445677888879998
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 13100276999999
Q gi|254780332|r 226 GRPGMGKTSLATNI 239 (504)
Q Consensus 226 arpg~GKTalalni 239 (504)
|||.+|||+|---+
T Consensus 286 GRPNVGKSTLFNRL 299 (714)
T PRK09518 286 GRPNVGKSTLVNRI 299 (714)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 99987689999886
No 437
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.12 Score=31.91 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 726776213100276999999999985
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~ 245 (504)
.+-|++.|.+|+||+++|..+|..+.-
T Consensus 39 ~HA~Lf~Gp~GiGK~tlA~~~A~~ll~ 65 (363)
T PRK07471 39 HHAWLIGGPQGIGKATLAYRMARFLLA 65 (363)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 645876799981889999999999857
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.54 E-value=0.063 Score=34.16 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=29.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 776213100276999999999985101112333332124797589995852
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM 272 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM 272 (504)
.|+.+.-|+|||+++.|+|...|+ .|++|+.+-+..
T Consensus 3 av~s~KGGVGKTT~a~NLA~aLa~---------------~g~~vllvD~D~ 38 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQ---------------LGYKVVLIDADL 38 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH---------------CCCCEEEEECCC
T ss_conf 997399987099999999999997---------------799189995899
No 439
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=94.52 E-value=0.066 Score=33.99 Aligned_cols=43 Identities=23% Similarity=0.517 Sum_probs=28.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
+.|..|+-|+|||+++.|++..++.. .|+.|+.+-+.-+---+
T Consensus 5 Iav~SgKGGvGKTtitanlga~~~~~--------------~~k~V~~iDaD~g~~nL 47 (262)
T COG0455 5 IAVVSGKGGVGKTTITANLGAALAAL--------------GGKVVLLIDADLGLGNL 47 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCEEEEEECCCCCCCH
T ss_conf 99984588756898998699999964--------------89769999658888728
No 440
>KOG0744 consensus
Probab=94.50 E-value=0.46 Score=27.58 Aligned_cols=71 Identities=27% Similarity=0.323 Sum_probs=45.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217999878999987410110001213
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGEL 298 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l 298 (504)
..|+.+-|+||-|||+++--+|........ ...-+.+++ |.+...+..+|.| .+|++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~----------~~y~~~~li---EinshsLFSKWFs----------ESgKl 233 (423)
T KOG0744 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTN----------DRYYKGQLI---EINSHSLFSKWFS----------ESGKL 233 (423)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHEEEEC----------CCCCCCEEE---EEEHHHHHHHHHH----------HHHHH
T ss_conf 148998579998822799999875146523----------764440699---9704678898871----------21138
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 76889989999999
Q gi|254780332|r 299 TRPDYEKIVACSQV 312 (504)
Q Consensus 299 ~~~e~~~i~~a~~~ 312 (504)
-...++++.+..+.
T Consensus 234 V~kmF~kI~ELv~d 247 (423)
T KOG0744 234 VAKMFQKIQELVED 247 (423)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999717
No 441
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=94.49 E-value=0.25 Score=29.53 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=71.9
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE----------------------------
Q ss_conf 4167726776213100276999999999985101112333332124797589----------------------------
Q gi|254780332|r 215 GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVG---------------------------- 266 (504)
Q Consensus 215 Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl---------------------------- 266 (504)
.+++|+.+-+-|.+|+|||.-++-+--=.. ..... ..-...-.|+++.
T Consensus 8 ~lk~G~~~aLvG~SGSGKS~tc~A~Lg~L~---~~~~~-~~G~i~l~G~~~~~~p~kemr~~Rg~~~~~imQnPr~AFNP 83 (239)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQ-TSGEILLDGRPLLALPKKEMRSIRGRHIATIMQNPRTAFNP 83 (239)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCC---CCCEE-EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 033243788874878758999999850358---65223-10266771723145873689988666630110285000016
Q ss_pred -----------EEECCCCH-HHHHHHHHHHHHHHCCC---CCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCH
Q ss_conf -----------99585217-99987899998741011---0001---213768899899999998627807825899889
Q gi|254780332|r 267 -----------FYSLEMSS-EQLATRIISEQTEVPSS---KIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGGISM 328 (504)
Q Consensus 267 -----------~fSlEMs~-~el~~R~is~~s~I~~~---~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti 328 (504)
+-+++=.. ++=..+++.+.-.|.+. +|.. -.|+-....|+--|..-+.+.||-|=|.|.-.+
T Consensus 84 l~tm~~h~~ETl~~~~k~~k~~A~~~~~~~l~~VgL~~~~~~L~~YPF~LSGGMLQRvMIAlA~~~~~PfLiADEPTTdL 163 (239)
T TIGR02770 84 LLTMAEHAIETLRSLGKLSKKQARALILEALEAVGLEDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 163 (239)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHH
T ss_conf 76399999999997217461017999999998638522799997466413686278999999998557101417998387
Q ss_pred H-----HHHHHHHHHCCCCCCCEEEEC
Q ss_conf 9-----999988640224447467767
Q gi|254780332|r 329 S-----QLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 329 ~-----~I~~~~r~~~~~~gi~~vvID 350 (504)
+ +|-...+++.+++|+.+++|=
T Consensus 164 Dv~~Q~~vL~~L~~l~~~~G~giLLiT 190 (239)
T TIGR02770 164 DVVVQARVLKLLDELRQKRGTGILLIT 190 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 799999999999999875187226520
No 442
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.48 E-value=0.32 Score=28.76 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC-
Q ss_conf 7267762131002769999999999851011123333321247975899958521799987899998741011000121-
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE- 297 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~- 297 (504)
+..+.|-|.+|+|||-++.-++..+. .+|+.|.|.+++.... ...-++.....++.--|.+=+
T Consensus 45 ~~~l~l~G~~G~GKTHLLqA~~~~~~---------------~~~~~~~yl~~~~~~~-~~~~~l~~l~~~dll~iDDi~~ 108 (235)
T PRK08084 45 SGYIYLWGREGAGRSHLLHAACAELS---------------QRGDAVGYVPLDKRAW-FVPEVLEGMEQLSLVCIDNIEC 108 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH---------------CCCCCEEEEEHHHHHH-HHHHHHHHHHHCCEEEEECHHH
T ss_conf 87699989999888999999999997---------------0798579987798665-1799998764189899827455
Q ss_pred -CCHHHHHH-HHHHHHHHHH---CCEEEE-CCC--CC--CHHHHHHHH
Q ss_conf -37688998-9999999862---780782-589--98--899999988
Q gi|254780332|r 298 -LTRPDYEK-IVACSQVMQK---LPLYID-QTG--GI--SMSQLATRA 335 (504)
Q Consensus 298 -l~~~e~~~-i~~a~~~l~~---~~l~I~-d~~--~~--ti~~I~~~~ 335 (504)
...++|+. +......+.+ ..+.+. +.+ .+ ...+++++.
T Consensus 109 i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl 156 (235)
T PRK08084 109 IAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHH
T ss_conf 469978999999999999984896699967988243023128899999
No 443
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.48 E-value=0.18 Score=30.67 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHH-C-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4336778999998741-1-2366443210137765564167726776213100276999999999985101112333332
Q gi|254780332|r 180 DAMTVAIDMAGQAFNR-D-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY 257 (504)
Q Consensus 180 ~~~~~~~~~~~~~~~~-~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~ 257 (504)
+.+..+...+-+.... + ..+.|-..=+..+=+++.- +..+=.|+-|-||+|||+++-.+|..++.. ..|..
T Consensus 167 ~~L~ky~~dLt~~Ar~gklDPviGR~~Ei~r~i~iL~R-r~KNNpiLvGepGVGKTAIvEGLA~rI~~g-~VP~~----- 239 (758)
T PRK11034 167 ERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRIVQG-DVPEV----- 239 (758)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCEEECCCCCCHHHHHHHHHHHHHCC-CCCHH-----
T ss_conf 58999856479999828999873848999999999976-325896021699986999999999999738-99765-----
Q ss_pred CCCCCCEEEEEECCCCHH--------HHHHHHHHHH
Q ss_conf 124797589995852179--------9987899998
Q gi|254780332|r 258 KTINGGIVGFYSLEMSSE--------QLATRIISEQ 285 (504)
Q Consensus 258 ~~~~g~~Vl~fSlEMs~~--------el~~R~is~~ 285 (504)
.++ +-+|||.|+.- +.-.|+-+..
T Consensus 240 --L~~--~~i~~Ldl~~LiAGtkyRGefEeRlk~vi 271 (758)
T PRK11034 240 --MAD--CTIYSLDIGSLLAGTKYRGDFEKRFKALL 271 (758)
T ss_pred --HCC--CEEEEEEHHHHHCCCCCCHHHHHHHHHHH
T ss_conf --589--88998458778616864154999999999
No 444
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=94.44 E-value=0.067 Score=33.94 Aligned_cols=126 Identities=26% Similarity=0.383 Sum_probs=59.6
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 77621310027699999999998510111233333212479758-99958521799987899998741011000121---
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQTEVPSSKIRRGE--- 297 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~s~I~~~~i~~g~--- 297 (504)
+.|.|+||+|||++...++..+.. .|.+| .|++-|.-.. ..| .|.....+.+|.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~---------------~~~~v~GF~T~evre~--g~R-----~GF~iv~l~~g~~~~ 59 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKS---------------EGVKVGGFYTPEVREG--GRR-----IGFDIVDLASGERGP 59 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECCEECC--CCE-----EEEEEEECCCCCEEE
T ss_conf 899789998899999999999986---------------7970748993021258--937-----899999904782677
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH-HHHCC-CCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 37688998999999986278078258998899999988-64022-44474677671353256644321137889999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRA-RRLKR-QRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMA 375 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~-r~~~~-~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~ 375 (504)
+...+. ....+-.+.+ ..+......+ ..+.. ....+++|||=++-|.-.+.. .-+.
T Consensus 60 la~~~~------~~~~~vGky~------v~~~~fe~~~~~~L~~a~~~~dlivIDEIG~mEl~s~~----------F~~~ 117 (168)
T pfam03266 60 LARVGG------VSGPRVGKYV------VNLEEFEEIALPALRRALEEADLIIIDEIGPMELKSPK----------FREA 117 (168)
T ss_pred EEEECC------CCCCCCCCCE------ECHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH----------HHHH
T ss_conf 444068------8775457716------66899999999999840668989999763145331499----------9999
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 99999882791999771
Q gi|254780332|r 376 LKALAKELNIPIIALSQ 392 (504)
Q Consensus 376 lK~lA~e~~ipvi~lsQ 392 (504)
+..+ .+-+.|+++.-.
T Consensus 118 v~~~-l~~~~~vl~ti~ 133 (168)
T pfam03266 118 IEEV-LSSNKPVLAVVH 133 (168)
T ss_pred HHHH-HCCCCCEEEEEE
T ss_conf 9999-669997999997
No 445
>CHL00175 minD septum-site determining protein; Validated
Probab=94.44 E-value=0.078 Score=33.45 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=26.5
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 641677267762131002769999999999851011123
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQ 252 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~ 252 (504)
.++.+ -+.|..+.-|+|||+++.|+|...|+.++..+.
T Consensus 10 ~~m~k-iIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVll 47 (279)
T CHL00175 10 ATMTR-IIVITSGKGGVGKTTTTANLGMSIARLGYRVAL 47 (279)
T ss_pred CCCCE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 59886-999974899844899999999999978998899
No 446
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.40 E-value=0.08 Score=33.33 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=32.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 677621310027699999999998510111233333212479758999585217
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
+.++++.-|+|||++|.|+|+..|+. .|.+|+++-+.+.-
T Consensus 2 i~~~~~kGGvG~Tt~A~nlA~~la~~--------------~~~~v~lvDldlqf 41 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKE--------------AGRRVLLVDLDLQF 41 (106)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEECCCCC
T ss_conf 89972899866899999999999984--------------19938999654677
No 447
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=94.37 E-value=0.047 Score=35.09 Aligned_cols=18 Identities=39% Similarity=0.761 Sum_probs=14.7
Q ss_pred EEEECCCHHHHHHHHHHH
Q ss_conf 776213100276999999
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNI 239 (504)
Q Consensus 222 ~Viaarpg~GKTalalni 239 (504)
+.|.|||.+|||+|.-.+
T Consensus 2 VaIvG~PNvGKSTLlN~L 19 (188)
T pfam02421 2 IALVGNPNVGKTTLFNAL 19 (188)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 899889998999999999
No 448
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.37 E-value=0.49 Score=27.37 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 36778999998741123664432101377655641677267762131002769999999999
Q gi|254780332|r 182 MTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
+.+....+.+... +|--.+.+=+.+ |++|..=+++.|.||.|||.+|--+|..+
T Consensus 137 l~~~k~el~E~ve-------lPl~~pe~f~~~-Gi~pPkGvLLyGPPGtGKTllAkAvA~e~ 190 (390)
T PRK03992 137 LDEQIREVREAVE-------LPLKNPELFEEV-GIEPPKGVLLYGPPGTGKTLLAKAVAHET 190 (390)
T ss_pred HHHHHHHHHHHHH-------HHHHCHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8999999999999-------986598999976-99999727868989997899999999874
No 449
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.36 E-value=0.24 Score=29.71 Aligned_cols=149 Identities=11% Similarity=0.158 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCC-----C-----CCCCCC-CCCCCEEEEEE----
Q ss_conf 01377655641677267762131002769999999999851-01112-----3-----333321-24797589995----
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA-YKAEL-----Q-----TDGSYK-TINGGIVGFYS---- 269 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~-~~~~~-----~-----~~~~~~-~~~g~~Vl~fS---- 269 (504)
++.++++.=-...||.+++.|.+|.|||||.-.+=.|.--. ++.-. + ..++.. -.=.+++.|.|
T Consensus 21 LpVl~~v~l~V~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~vl~vRr~tiGYVSQFLR 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEECCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 00006743787367358853688876789999766304746867777624047675076845778773003351555303
Q ss_pred -----------------CCCCHHHHHHHHHHHHHHHCC-CCCC---CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCH
Q ss_conf -----------------852179998789999874101-1000---1213768899899999998627807825899889
Q gi|254780332|r 270 -----------------LEMSSEQLATRIISEQTEVPS-SKIR---RGELTRPDYEKIVACSQVMQKLPLYIDQTGGISM 328 (504)
Q Consensus 270 -----------------lEMs~~el~~R~is~~s~I~~-~~i~---~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti 328 (504)
.=|+.++-..|.-+..+..+. .+|- =.++|-.|..|++-|...+..+|+-.=|.|.-|+
T Consensus 101 ViPRvsalevV~ePL~~~G~~~~~A~~~A~~LL~rLniPERLW~LpPaTFSGGEqQRVNIARg~i~d~PiLLLdEPTASL 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWSLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred ECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 12886728888787987289589999999999975574024428878865660589999987652577400113554024
Q ss_pred HH-----HHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 99-----9998864022444746776713532
Q gi|254780332|r 329 SQ-----LATRARRLKRQRGLDLLIVDYIQLM 355 (504)
Q Consensus 329 ~~-----I~~~~r~~~~~~gi~~vvIDYLqli 355 (504)
+. +..-++.. +..|.-+|-|=|--.+
T Consensus 181 d~~nr~vVvELi~e~-K~~G~AliGIFHde~v 211 (224)
T TIGR02324 181 DATNRKVVVELIAEA-KARGAALIGIFHDEEV 211 (224)
T ss_pred CCCCHHHHHHHHHHH-HHCCCEEEEEECHHHH
T ss_conf 114248899999999-7659768986081899
No 450
>PRK05642 DNA replication initiation factor; Validated
Probab=94.36 E-value=0.49 Score=27.38 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=26.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 26776213100276999999999985101112333332124797589995852
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM 272 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM 272 (504)
.+..|-|.+|.|||-++.-++..+.. .|++++|++++-
T Consensus 46 ~~l~i~G~~G~GKTHLL~A~~~~~~~---------------~~~~~~yl~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ---------------RGEPAVYLPLAE 83 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEHHH
T ss_conf 83899889999889999999999980---------------799679978999
No 451
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.36 E-value=0.33 Score=28.68 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=28.6
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 62131002769999999999851011123333321247975899958521
Q gi|254780332|r 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS 273 (504)
Q Consensus 224 iaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs 273 (504)
..-.-|+|||+.+.|+|...|. .|++|+++-+...
T Consensus 5 ~n~KGGvGKtt~~~~la~~~a~---------------~g~~vl~iD~DpQ 39 (104)
T cd02042 5 ANQKGGVGKTTTAVNLAAALAR---------------RGKRVLLIDLDPQ 39 (104)
T ss_pred EECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCC
T ss_conf 7389987689999999999997---------------7992999977988
No 452
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.36 E-value=0.18 Score=30.66 Aligned_cols=178 Identities=23% Similarity=0.295 Sum_probs=88.3
Q ss_pred CCCCCH----HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCH
Q ss_conf 432101----37765564167726776213100276999999999985101112333332124797589995---85217
Q gi|254780332|r 202 VSTGIQ----TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSS 274 (504)
Q Consensus 202 i~TG~~----~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~ 274 (504)
+..+|+ .|+++.-.++||+.+-|.|++|.||||++.=+..-. .. +...+++-- -+++.
T Consensus 334 v~f~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~--------------~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 334 VSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DP--------------TSGEILIDGIDIRDISL 398 (567)
T ss_pred EEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHC-CC--------------CCCEEEECCEEHHHCCH
T ss_conf 7897599876110522775489878885588885789999998615-88--------------88369899997775385
Q ss_pred HHHHHHHHHHHH-------HHCCCCCCCCC--CCHHHHHHHHHH---HHHHHHCC----EEEECC-CCCCHHH--HHHHH
Q ss_conf 999878999987-------41011000121--376889989999---99986278----078258-9988999--99988
Q gi|254780332|r 275 EQLATRIISEQT-------EVPSSKIRRGE--LTRPDYEKIVAC---SQVMQKLP----LYIDQT-GGISMSQ--LATRA 335 (504)
Q Consensus 275 ~el~~R~is~~s-------~I~~~~i~~g~--l~~~e~~~i~~a---~~~l~~~~----l~I~d~-~~~ti~~--I~~~~ 335 (504)
+.+-.+ ++... +-=.+.|.-|+ .+++|..+..+. .+.+.++| -.+.+. ..+|-.| -.+.+
T Consensus 399 ~~lr~~-i~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQriaiA 477 (567)
T COG1132 399 DSLRKR-IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHHHH-EEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHH
T ss_conf 678878-2354664277776699997457889999999999999486378984766678360578871889999999999
Q ss_pred HHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 64022444746776713532566443211378899999999999988279199977138220168999984010143242
Q gi|254780332|r 336 RRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGS 415 (504)
Q Consensus 336 r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~ 415 (504)
|.+.+ +.++++.| .+.+.- +...+ ..|-+.++.+.+. ...++ .|+ |+. .
T Consensus 478 Rall~--~~~iLILD-----EaTS~l-D~~tE--~~I~~~l~~l~~~-rT~ii-IaH-----------Rls--------t 526 (567)
T COG1132 478 RALLR--NPPILILD-----EATSAL-DTETE--ALIQDALKKLLKG-RTTLI-IAH-----------RLS--------T 526 (567)
T ss_pred HHHHH--CCCEEEEC-----CHHHCC-CHHHH--HHHHHHHHHHHCC-CEEEE-EEC-----------CCC--------H
T ss_conf 99703--69868872-----311026-77569--9999999998269-87999-866-----------722--------5
Q ss_pred HHHHCCEEEEEE
Q ss_conf 233138788972
Q gi|254780332|r 416 IEQDADVVLFVI 427 (504)
Q Consensus 416 IEqdAD~v~~l~ 427 (504)
|.+ ||.|+.+.
T Consensus 527 i~~-aD~IiVl~ 537 (567)
T COG1132 527 IKN-ADRIIVLD 537 (567)
T ss_pred HHH-CCEEEEEE
T ss_conf 874-88899975
No 453
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.34 E-value=0.045 Score=35.25 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4321013776556416772-677621310027699999999998510
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSD-LIIIAGRPGMGKTSLATNIAYNVADAY 247 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~-l~Viaarpg~GKTalalniA~~~A~~~ 247 (504)
+.||++.+|-++- +.+|+ +-|+|+ .|+|||+++..++.|++..+
T Consensus 122 l~TGIkaID~l~p-igrGqr~gIfgg-aGvGKT~Ll~e~i~n~~~~~ 166 (449)
T TIGR03305 122 FETGIKAIDVLVP-LERGGKAGLFGG-AGVGKTVLLTEMIHNMVGQH 166 (449)
T ss_pred EECCCEEHHHCCC-CCCCCEEEEECC-CCCCCCCHHHHHHHHHHHHC
T ss_conf 0028440230245-245756566527-99984101899998656414
No 454
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.34 E-value=0.49 Score=27.33 Aligned_cols=148 Identities=21% Similarity=0.279 Sum_probs=70.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121376
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
++.|-|...+|||+||.++|... +.++.|+..= ...|
T Consensus 1 iiLVtGG~rSGKS~~AE~la~~~------------------~~~~~YiAT~-------------------------~~~D 37 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------------------GGPVTYIATA-------------------------EAFD 37 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHC------------------CCCCEEEECC-------------------------CCCC
T ss_conf 98997786636899999999845------------------9981999788-------------------------9889
Q ss_pred HHH-HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCC--HHHHHH-HHHHHHH
Q ss_conf 889-989999999862780782589988999999886402244474677671353256644321--137889-9999999
Q gi|254780332|r 301 PDY-EKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEE--NRVLEI-TGITMAL 376 (504)
Q Consensus 301 ~e~-~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~--~r~~~i-~~is~~l 376 (504)
+|| ++|.....+- ...+.-.+.| ..+.++. +.. .+-+.|.||-|.+.-.+--... .....+ .+|.+-+
T Consensus 38 ~Em~~RI~~Hr~~R-~~~w~TiE~~-~~l~~~l---~~~---~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~i~~l~ 109 (169)
T cd00544 38 DEMAERIARHRKRR-PAHWRTIETP-RDLVSAL---KEL---DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALL 109 (169)
T ss_pred HHHHHHHHHHHHCC-CCCCEEEECC-CCHHHHH---HHC---CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999668-9996699634-4399999---855---98885998607899999874133123667999999999
Q ss_pred HHHHHHHCCCEEEEEE-CCCCCCCCCCCCCCCC---CC-CCCCH----HHHHCCEEEEE
Q ss_conf 9999882791999771-3822016899998401---01-43242----23313878897
Q gi|254780332|r 377 KALAKELNIPIIALSQ-LSRQVENRDNKRPQLS---DL-RESGS----IEQDADVVLFV 426 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQ-LnR~~e~r~~krP~ls---DL-r~Sg~----IEqdAD~v~~l 426 (504)
..+ ++...++|++|- +-- +--|.-. .. +..|. |-+.||.|.++
T Consensus 110 ~~l-~~~~~~~ViVSnEVG~------givp~~~~~R~f~d~lG~lNQ~iA~~ad~V~lv 161 (169)
T cd00544 110 AAV-RNKPGTLILVSNEVGL------GVVPENALGRRFRDELGRLNQRLAALADEVYLV 161 (169)
T ss_pred HHH-HHCCCCEEEEECCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 999-7089979999658778------988998899999999999999999976988999
No 455
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=0.37 Score=28.27 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 7726776213100276999999999985
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~ 245 (504)
=++-+++.|..|+|||++|..+|..+..
T Consensus 25 l~HAyLF~Gp~G~GK~~~A~~~A~~ll~ 52 (313)
T PRK05564 25 FSHASLIVGEDGIGKSILAKEIANKILG 52 (313)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8750432799985099999999999828
No 456
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.5 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 1677267762131002769999999
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA 240 (504)
+++|+.+-|.|..|.|||+|+-.++
T Consensus 276 v~~GEivgivG~nGsGKSTL~k~L~ 300 (501)
T PRK11288 276 VRRGEIVGFFGLVGAGRSELMKLLY 300 (501)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHC
T ss_conf 7088399975688864879999843
No 457
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=94.28 E-value=0.11 Score=32.37 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 210137765564167726776213100276999999999985
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVAD 245 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~ 245 (504)
||++.+|-++- +.+|+=+.|-|.||+|||+++.+++.|...
T Consensus 1 TGi~~ID~l~p-ig~GQr~~I~g~~g~GKt~l~~~i~~~~~~ 41 (213)
T pfam00006 1 TGIRAIDLLLP-IGKGQRIGIFGGSGTGKTVLLGMIARNAKA 41 (213)
T ss_pred CCCCEEECCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98400020166-457888778789999889999999985661
No 458
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=94.27 E-value=0.26 Score=29.39 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHHH-HHH----CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 64432101377655-641----6772677621310027699999999998510111233333212479758999585217
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGL----QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl----~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
.-+.=||+.+=+.+ .-| .+-.++||+|+||+|||-+...+.. .|..|+ -|
T Consensus 103 ~~l~GGYKayR~~v~~~l~~~~~~~~~~vl~G~TG~GKT~iL~~L~~-------------------~G~qvi--DL---- 157 (311)
T TIGR03167 103 PRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALAN-------------------AGAQVL--DL---- 157 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH-------------------CCCCCC--CH----
T ss_conf 31578389999999999971454687699878888778999999997-------------------699742--58----
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHH-HCCEEEECCCC
Q ss_conf 9998789999874101100012137688998-999999986-27807825899
Q gi|254780332|r 275 EQLATRIISEQTEVPSSKIRRGELTRPDYEK-IVACSQVMQ-KLPLYIDQTGG 325 (504)
Q Consensus 275 ~el~~R~is~~s~I~~~~i~~g~l~~~e~~~-i~~a~~~l~-~~~l~I~d~~~ 325 (504)
|.+|.--=|..++++. .++-+...++. +......+. ..++||+|.+.
T Consensus 158 EglAnHRGS~FG~~~~----~~QPsQk~FEn~l~~~l~~~~~~~~i~vE~ES~ 206 (311)
T TIGR03167 158 EGLANHRGSSFGALGL----GPQPSQKRFENALAEALRRLDPGRPIFVEDESR 206 (311)
T ss_pred HHHHHCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 9986314653468888----999789999999999998178889569960331
No 459
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.26 E-value=0.34 Score=28.55 Aligned_cols=130 Identities=20% Similarity=0.255 Sum_probs=63.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH-HHHHHHHHHHCCCCCCCC
Q ss_conf 7726776213100276999999999985101112333332124797589995852179998-789999874101100012
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA-TRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~-~R~is~~s~I~~~~i~~g 296 (504)
+|-+.|.-| .|-|||+-|+-+|..++- .|.+|+++.+==+..+.. .+++....+|+....-.+
T Consensus 2 ~Gli~vytG-~GKGKTTAAlG~alRA~G---------------~G~rV~ivQFlKg~~~~GE~~~l~~l~~i~~~~~g~~ 65 (159)
T cd00561 2 KGLIQVYTG-NGKGKTTAALGLALRALG---------------HGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG 65 (159)
T ss_pred CCEEEEEEC-CCCCHHHHHHHHHHHHHC---------------CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCC
T ss_conf 847999957-999708999999999844---------------9998999998158987559999984899689988999
Q ss_pred CC-CHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 13-76889989999999862780782589988999999886402244474677671353256644321137889999999
Q gi|254780332|r 297 EL-TRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMA 375 (504)
Q Consensus 297 ~l-~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~ 375 (504)
-. ...+-+.-.. ...+.-..+++.......|+||.|=+...-.-+- -...++-.-
T Consensus 66 ~~~~~~~~~~~~~------------------~a~~~~~~a~~~l~~~~~dlvVLDEi~~a~~~gl------i~~~~v~~~ 121 (159)
T cd00561 66 FFWTTENDEEDIA------------------AAAEGWAFAKEAIASGEYDLVILDEINYALGYGL------LDVEEVVDL 121 (159)
T ss_pred CCCCCCCCHHHHH------------------HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCC------CCHHHHHHH
T ss_conf 7322798799999------------------9999999999998688989997366899998599------179999999
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99999882791999
Q gi|254780332|r 376 LKALAKELNIPIIA 389 (504)
Q Consensus 376 lK~lA~e~~ipvi~ 389 (504)
|+ .+--++-||+
T Consensus 122 l~--~rp~~~evVl 133 (159)
T cd00561 122 LK--AKPEDLELVL 133 (159)
T ss_pred HH--HCCCCCEEEE
T ss_conf 98--4899978999
No 460
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=94.25 E-value=0.51 Score=27.20 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC--EEEECCCC--CCHHHHHH---HHHHHCCCCCCCEEEECCH
Q ss_conf 2137688998999999986278--07825899--88999999---8864022444746776713
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKLP--LYIDQTGG--ISMSQLAT---RARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~~--l~I~d~~~--~ti~~I~~---~~r~~~~~~gi~~vvIDYL 352 (504)
..|+..|..|+.-|..-=+++- +||-|.|+ +...+... .+++++ ..|--+|||+|=
T Consensus 488 ~TLSGGE~QRirLa~qLgS~L~gvlYVLDEPSiGLHprD~~rLi~~L~~Lr-d~GNTVlVVEHD 550 (944)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKRLR-DLGNTLIVVEHD 550 (944)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECC
T ss_conf 776714889999999865666464999368755479889999999999998-579859998356
No 461
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.2 Score=30.29 Aligned_cols=145 Identities=22% Similarity=0.268 Sum_probs=62.6
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 77621310027699999999998510111233333212479758999585217-99987899998741011000121376
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
++|-|.||.||||+|-.+|... ..+.. -+..+|--++.. .++..+.-. -+..|.+-+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~----~i~hl----------stgd~~r~~~~~~t~lg~~~k~--------~i~~g~lv~ 60 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL----GLPHL----------DTGDILRAAIAERTELGEEIKK--------YIDKGELVP 60 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHC----CCCEE----------CCCCCCCHHHCCCCHHHHHHHH--------HHHCCCCCC
T ss_conf 9998999998899999999976----99785----------5220111100323689999999--------987589504
Q ss_pred HHH--HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCC-CCCEEE-ECCHH--HC-CCCCCC--CCHHHHHHHH
Q ss_conf 889--989999999862780782589988999999886402244-474677-67135--32-566443--2113788999
Q gi|254780332|r 301 PDY--EKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQR-GLDLLI-VDYIQ--LM-TTSKKI--EENRVLEITG 371 (504)
Q Consensus 301 ~e~--~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~-gi~~vv-IDYLq--li-~~~~~~--~~~r~~~i~~ 371 (504)
.+. ..+............+|.|.-..++.+.++.-|.++... .+++++ ++.-. ++ +...+. .++... .
T Consensus 61 d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~---~ 137 (178)
T COG0563 61 DEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEE---T 137 (178)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCHH---H
T ss_conf 1769979999997506577299989983699999999999863998552602447789999997366543346789---9
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999999882791999771
Q gi|254780332|r 372 ITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 372 is~~lK~lA~e~~ipvi~lsQ 392 (504)
+.+.++.. .+...|++..-+
T Consensus 138 ~~~R~~~y-~~~~~pl~~~y~ 157 (178)
T COG0563 138 VKKRLKVY-HEQTAPLIEYYS 157 (178)
T ss_pred HHHHHHHH-HHCCCCEEEEEE
T ss_conf 99999998-754683477775
No 462
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.21 E-value=0.042 Score=35.44 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 432101377655641677267762131002769999999999851
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
+.||++.+|-++- +.+|+=+-|-|.+|+|||+++..++.|++..
T Consensus 125 l~TGIkaID~l~p-igrGqrigIfggaGvGKTvL~~~ii~n~~~~ 168 (459)
T PRK12597 125 LETGIKVIDLLCP-IAKGGKTGLFGGAGVGKTVLMMELIFNISKR 168 (459)
T ss_pred CCCCHHHHHCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 0038055541266-3578777743689998215789999987755
No 463
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.21 E-value=0.38 Score=28.20 Aligned_cols=142 Identities=9% Similarity=0.113 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCC---CEEEEECCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCC--CCCCCC-CE-EEEEECCCC----H
Q ss_conf 377655641677---2677621310027699999999998510111--233333--212479-75-899958521----7
Q gi|254780332|r 208 TLDKQMGGLQRS---DLIIIAGRPGMGKTSLATNIAYNVADAYKAE--LQTDGS--YKTING-GI-VGFYSLEMS----S 274 (504)
Q Consensus 208 ~LD~~~gGl~~G---~l~Viaarpg~GKTalalniA~~~A~~~~~~--~~~~~~--~~~~~g-~~-Vl~fSlEMs----~ 274 (504)
.++++..-+..| +-+++.|.+|+||++||..+|....=..... ..-.+. .....| +| +.++..|-+ -
T Consensus 9 ~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~v 88 (324)
T PRK06871 9 IYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGV 88 (324)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCH
T ss_conf 99999999986995437876899997899999999999828999999988889899999738999879984678887889
Q ss_pred HHHHHHHHHHHHHHC---CCCC---CCC-CCCHHHHHHHHHHHHHHHHCC---E--EEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999878999987410---1100---012-137688998999999986278---0--782589988999999886402244
Q gi|254780332|r 275 EQLATRIISEQTEVP---SSKI---RRG-ELTRPDYEKIVACSQVMQKLP---L--YIDQTGGISMSQLATRARRLKRQR 342 (504)
Q Consensus 275 ~el~~R~is~~s~I~---~~~i---~~g-~l~~~e~~~i~~a~~~l~~~~---l--~I~d~~~~ti~~I~~~~r~~~~~~ 342 (504)
+++ ..+....+.-+ ..++ ... .|+..-...+ .+.+.+=| + .+.+.+..=+..|+++|.++.-..
T Consensus 89 d~I-R~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNAL---LKtLEEPp~~~~fiL~t~~~~~ll~TI~SRCq~~~~~~ 164 (324)
T PRK06871 89 DQV-REINEKVSQFAQQGGNKVVYIQGAERLTEAAANAL---LKTLEEPRPNTYFLLQADLSASLLATIYSRCQTWLIHV 164 (324)
T ss_pred HHH-HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH---HHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCEECCC
T ss_conf 999-99999986462205966999758888579999999---99833898783899987870103240862661200899
Q ss_pred CCCEEEECCHH
Q ss_conf 47467767135
Q gi|254780332|r 343 GLDLLIVDYIQ 353 (504)
Q Consensus 343 gi~~vvIDYLq 353 (504)
.-.-.+.+||+
T Consensus 165 p~~~~~~~wL~ 175 (324)
T PRK06871 165 PEEQIALDWLQ 175 (324)
T ss_pred CCHHHHHHHHH
T ss_conf 49999999999
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.19 E-value=0.07 Score=33.77 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121---
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE--- 297 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~--- 297 (504)
++-|+|.+|.|||+||-.++... .+..|..+|+.== .|-. +..+...-...+
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l-----------------~~~~v~~i~~D~y-----y~~~---~~~~~~~~~~~~fd~ 55 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-----------------GNPKVVIISQDSY-----YKDL---SHEELEERKNNNYDH 55 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-----------------CCCCEEEEECCCC-----CCCC---CCCCHHHHCCCCCCC
T ss_conf 98988999885999999999980-----------------9998589978888-----8798---604387843678789
Q ss_pred CCHHHHHHHHHHHHHHHHCC-EE--EECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 37688998999999986278-07--8258998899999988640224447467767135325
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLP-LY--IDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~-l~--I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
....+|+.+.+....|.+.. +. ++|...-+.. . ....-..-++|||+.+.++.
T Consensus 56 p~a~d~~~l~~~L~~L~~g~~i~~p~Yd~~t~~r~---~---~~~~i~~~~iiIvEGi~~l~ 111 (198)
T cd02023 56 PDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRL---K---ETVTVYPADVIILEGILALY 111 (198)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCC---C---CCEEECCCCEEEEECHHHCC
T ss_conf 22644999999999986489761231003457546---7---72796588659982534306
No 465
>PRK10818 cell division inhibitor MinD; Provisional
Probab=94.19 E-value=0.092 Score=32.89 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=24.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 677621310027699999999998510111233
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQT 253 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~ 253 (504)
+.|..+.-|+|||+++.|+|...|..++..+..
T Consensus 5 IaV~s~KGGVGKTT~avNLA~aLA~~G~kVlli 37 (270)
T PRK10818 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999789998418999999999999779968999
No 466
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=94.15 E-value=0.082 Score=33.26 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=37.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH-HHHHHHHHCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878-9999874101100
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR-IISEQTEVPSSKI 293 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R-~is~~s~I~~~~i 293 (504)
|.-|-=+=+-|+.|.|||+||+++|.. -+.||+++.-. .|+... ++...+|-..++.
T Consensus 18 L~~G~PvHl~GPaG~GKT~LA~hvA~~------------------r~RPV~l~~Gd---~eL~~~DLvG~~~g~~~~kv 75 (265)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHVARK------------------RDRPVVLINGD---AELTTSDLVGSYAGYTRKKV 75 (265)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHH------------------CCCCEEEEECC---CCCCCCCCCCCCCCCEEEEE
T ss_conf 227886674478885568999999973------------------68968998658---23265442315467522223
No 467
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.15 E-value=0.54 Score=27.06 Aligned_cols=29 Identities=31% Similarity=0.651 Sum_probs=20.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 655641677267762131002769999999
Q gi|254780332|r 211 KQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 (504)
Q Consensus 211 ~~~gGl~~G~l~Viaarpg~GKTalalniA 240 (504)
+.+|-|.|.+ +.+-|.||-|||.+|-.+|
T Consensus 144 e~Fg~WAPkn-VLFyGppGTGKTm~Akala 172 (368)
T COG1223 144 ERFGDWAPKN-VLFYGPPGTGKTMMAKALA 172 (368)
T ss_pred HHHCCCCCCE-EEEECCCCCCHHHHHHHHH
T ss_conf 8763457541-6877899964879999872
No 468
>KOG0057 consensus
Probab=94.14 E-value=0.54 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=21.0
Q ss_pred HHHH----HCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 5564----16772677621310027699999
Q gi|254780332|r 212 QMGG----LQRSDLIIIAGRPGMGKTSLATN 238 (504)
Q Consensus 212 ~~gG----l~~G~l~Viaarpg~GKTalaln 238 (504)
++.| ..+|+=+-|.|++|+|||++.--
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTilr~ 397 (591)
T KOG0057 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRL 397 (591)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 0036058864897898978999878899999
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.13 E-value=0.44 Score=27.74 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=17.1
Q ss_pred CCEEEEECCCHHHHHHHHHHH
Q ss_conf 726776213100276999999
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNI 239 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalni 239 (504)
|.|+||.|++|.|||+++--+
T Consensus 2 G~LivvsgPSGaGK~Tli~~l 22 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAAL 22 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 709999899869999999999
No 470
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=94.09 E-value=0.55 Score=26.97 Aligned_cols=17 Identities=12% Similarity=0.614 Sum_probs=8.5
Q ss_pred HCCHHHCCCHHHHHHHHHHH
Q ss_conf 42966637988899999999
Q gi|254780332|r 50 FLKPLHFFEAIHQKIFEIMG 69 (504)
Q Consensus 50 ~L~pedFy~~~hr~IF~ai~ 69 (504)
++.||.+-.+ .+++.+.
T Consensus 112 yisPErl~~~---~f~~~L~ 128 (590)
T COG0514 112 YISPERLMSP---RFLELLK 128 (590)
T ss_pred EECCHHHCCH---HHHHHHH
T ss_conf 9881363176---8999997
No 471
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=94.08 E-value=0.55 Score=26.96 Aligned_cols=153 Identities=22% Similarity=0.357 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHHH
Q ss_conf 101377655641677267762131002769999999999851011123333321247975899958521--799987899
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS--SEQLATRII 282 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs--~~el~~R~i 282 (504)
=|+.+|..+.| +.+..||-| ||-||| |..|+..=+ ..|.+|++ |.=-| ++|+ ..+
T Consensus 16 Q~e~I~~~L~g--~RD~~vvMp-TG~GKS-LCYQ~Pa~~----------------~~G~t~VI-sPLiSLm~DQV-~~L- 72 (497)
T TIGR00614 16 QLEVINAVLEG--RRDCLVVMP-TGGGKS-LCYQLPALY----------------SDGLTLVI-SPLISLMEDQV-LQL- 72 (497)
T ss_pred HHHHHHHHHCC--CCCEEEEEC-CCCCHH-HHHHHHHHH----------------CCCCEEEE-CCHHHHHHHHH-HHH-
T ss_conf 89999987548--975699815-898603-676405675----------------08964997-36365689999-998-
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHHHHCC-EEEECCCC-CCHH-HHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 9987410110001213768899899999-9986278-07825899-8899-99998864022444746776713532566
Q gi|254780332|r 283 SEQTEVPSSKIRRGELTRPDYEKIVACS-QVMQKLP-LYIDQTGG-ISMS-QLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 283 s~~s~I~~~~i~~g~l~~~e~~~i~~a~-~~l~~~~-l~I~d~~~-~ti~-~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
...+|+..-|-+ .-|.++...|..-+ ++..+++ ||| +|- +.-+ .+...+..+....++-+|+||=.+-|+-=
T Consensus 73 -~~~~i~A~~L~s-~~s~~~~~~v~~~~~~k~g~~kllYv--tPE~~~~~~~ll~~Le~~Y~~~~~~~iAvDEAHCiSqW 148 (497)
T TIGR00614 73 -KASGIPATFLNS-SQSKEQQKEVLTDLSKKDGKLKLLYV--TPEKISKSKSLLQTLEKLYERKGITLIAVDEAHCISQW 148 (497)
T ss_pred -HHCCCCEECCCC-CCCHHHHHHHHHHHHHHCCCEEEEEE--CHHHHHCCHHHHHHHHHHHHHCCCEEEEEECEEEECCC
T ss_conf -744863010443-25778999999998730797589971--63465346478999999886449669998321543588
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf 4432113788999999999999882-79199977
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKEL-NIPIIALS 391 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~-~ipvi~ls 391 (504)
+-.-+..|.+++. || ..+ ++|||+|+
T Consensus 149 GHDFR~~Y~~LG~----Lk---~~fP~vP~~ALT 175 (497)
T TIGR00614 149 GHDFRPDYKALGS----LK---QKFPNVPIMALT 175 (497)
T ss_pred CCCCCHHHHHHHH----HH---HHCCCCCEEEEE
T ss_conf 8874079999657----88---854887436434
No 472
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=94.05 E-value=0.56 Score=26.91 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 72677621310027699999999998510111233333212479758999585217999878999987410110001213
Q gi|254780332|r 219 SDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGEL 298 (504)
Q Consensus 219 G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l 298 (504)
|++ .|+|.||.|||.+...+...++..+... -|-|+-..-... -++...+||.- ...-.
T Consensus 531 ~hl-li~G~tgsGKSv~lnt~i~Sll~~~~P~-------------ev~~~~iD~k~~-----~L~~~~~iPHl--~~~v~ 589 (858)
T COG1674 531 GHL-LIAGATGSGKSVALNTMILSLLYTHSPE-------------EVRFYIIDPKML-----ELAAYDGLPHL--GDPVV 589 (858)
T ss_pred CCE-EEECCCCCCHHHHHHHHHHHHHHCCCCH-------------HEEEEEECCCCC-----CCHHHCCCCCC--CCCCC
T ss_conf 887-8824888651558999999987518906-------------849999747875-----43333069855--77232
Q ss_pred CHHHHHHHHHHHH----HHHH-CCEEEECCCCCCHHHHHHHHHHHCCCCC--CCEEEECC-HHHCCCCCCCCCHHHHHHH
Q ss_conf 7688998999999----9862-7807825899889999998864022444--74677671-3532566443211378899
Q gi|254780332|r 299 TRPDYEKIVACSQ----VMQK-LPLYIDQTGGISMSQLATRARRLKRQRG--LDLLIVDY-IQLMTTSKKIEENRVLEIT 370 (504)
Q Consensus 299 ~~~e~~~i~~a~~----~l~~-~~l~I~d~~~~ti~~I~~~~r~~~~~~g--i~~vvIDY-Lqli~~~~~~~~~r~~~i~ 370 (504)
++ +.++...+.+ ++.. +.++... .--++..-..+++......+ .=+||||= --||....+. +.
T Consensus 590 td-~~~k~~~al~~~~~eme~R~~l~~~~-~vr~i~~yn~k~~~~~~~~~lP~iviiiDe~adlm~~~~k~-------ve 660 (858)
T COG1674 590 TD-EKEKAEKALAELVAEMERRYKLFSEK-GVRNIEGYNEKIAGAIPDEELPYIVIIIDEYADLMMVAGKE-------LE 660 (858)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHCCCCHH-------HH
T ss_conf 47-47789999999999999999988885-66627777654202455567980899944478886123176-------99
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999999998827919997713
Q gi|254780332|r 371 GITMALKALAKELNIPIIALSQL 393 (504)
Q Consensus 371 ~is~~lK~lA~e~~ipvi~lsQL 393 (504)
+--.+|-++|+..+|++|+.+|-
T Consensus 661 ~~i~rLa~~ara~GIHlilatqR 683 (858)
T COG1674 661 ELIARLAQKGRAAGIHLILATQR 683 (858)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99999999787658269997489
No 473
>pfam00406 ADK Adenylate kinase.
Probab=94.05 E-value=0.53 Score=27.08 Aligned_cols=101 Identities=21% Similarity=0.245 Sum_probs=48.7
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH---CCCCCCCCCCCHH
Q ss_conf 2131002769999999999851011123333321247975899958521799987899998741---0110001213768
Q gi|254780332|r 225 AGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEV---PSSKIRRGELTRP 301 (504)
Q Consensus 225 aarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I---~~~~i~~g~l~~~ 301 (504)
-|.||+||+|.|..+|.+.. +.++| ..++....+...|.. =...+.+|.+-++
T Consensus 2 ~G~PGsGKgTqa~~La~~~~--------------------~~~is----~GdllR~~~~~~s~~g~~i~~~i~~G~lvpd 57 (186)
T pfam00406 2 LGPPGAGKGTQAERIVQKYG--------------------IVHLS----TGDLLRAEVKSGTELGKEAKEYMDKGELVPD 57 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHC--------------------CEEEC----HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH
T ss_conf 18898985999999999859--------------------90676----9999999986288799999999986995430
Q ss_pred HH--HHHHHHHHHHHHCC-EEEECCCCCCHHHHHHHHHHHCCCCCCCEEE-EC
Q ss_conf 89--98999999986278-0782589988999999886402244474677-67
Q gi|254780332|r 302 DY--EKIVACSQVMQKLP-LYIDQTGGISMSQLATRARRLKRQRGLDLLI-VD 350 (504)
Q Consensus 302 e~--~~i~~a~~~l~~~~-l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vv-ID 350 (504)
+. .-+.+++......+ +.+|-.|. |+.|....-..+.....+++|| +|
T Consensus 58 ~i~~~l~~~~l~~~~~~~g~iLDGfPR-t~~Qa~~l~~~l~~~~~~~~Vi~l~ 109 (186)
T pfam00406 58 EVVVGLVKERLEQNDCKNGFLLDGFPR-TVPQAEALEEMLEYGIKLDYVIEFD 109 (186)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCC-CHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999999970745548668737989-8999999999997499877799997
No 474
>PRK08903 hypothetical protein; Validated
Probab=94.04 E-value=0.56 Score=26.91 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
.+.....+..++.+..|-|.+|+|||-++.-++..+.. .++.+.|++.+-..+
T Consensus 31 ~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~---------------~~~~~~yl~~~~~~~ 83 (227)
T PRK08903 31 RLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASE---------------GGKNARYLDPASPLL 83 (227)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEECCCCCHH
T ss_conf 99988743887866999899999888999999999980---------------699749965110457
No 475
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=94.03 E-value=0.47 Score=27.46 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 3776556416772677621310027699999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATN 238 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalaln 238 (504)
-||++==-+..|+=+-+-|++|+||||||-=
T Consensus 27 VL~~vsL~l~~Ge~~gLLG~SG~GKSTLArl 57 (267)
T TIGR02769 27 VLDNVSLSLEEGETVGLLGRSGCGKSTLARL 57 (267)
T ss_pred HCCCCCEEECCCCEEEECCCCCCCHHHHHHH
T ss_conf 0367432313775055236788737789999
No 476
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.01 E-value=0.078 Score=33.45 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 4321013776556416772677621310027699999999998
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA 244 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A 244 (504)
+.||++.+|-++- +.+|+=+-|-|.+|+|||+|+..++.|+.
T Consensus 142 L~TGIraID~l~p-igrGQRigIfagsGvGKs~Ll~~i~r~~~ 183 (441)
T PRK08927 142 LDLGVRALNTFLT-CCRGQRLGIFAGSGVGKSVLLSMLARNTD 183 (441)
T ss_pred CCCCHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 1036015653300-20364666316899987899999986416
No 477
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=93.99 E-value=0.41 Score=27.95 Aligned_cols=165 Identities=16% Similarity=0.235 Sum_probs=80.9
Q ss_pred EECCC---CHHHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHHHHHH
Q ss_conf 95852---179998789999874101100012---137688998999999986278078258998899-----9999886
Q gi|254780332|r 268 YSLEM---SSEQLATRIISEQTEVPSSKIRRG---ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLATRAR 336 (504)
Q Consensus 268 fSlEM---s~~el~~R~is~~s~I~~~~i~~g---~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~~~~r 336 (504)
|-|-| +++|+..|......=|.+...-.. +|+-.+..||.-|-.-..+=++-.=|.|=--++ +....++
T Consensus 65 fgLk~~k~~~~ei~~RV~e~L~~V~L~~~a~rkp~qLSGGQ~QRvAlARa~v~kPk~LLlDEpLsALD~kLR~~MQ~ELk 144 (331)
T TIGR01187 65 FGLKMRKVPRAEIKPRVKEALRLVQLEEFAKRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELK 144 (331)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 44351788856688999999742130011046731046852899999999860895677117722643898998899999
Q ss_pred HHCCCCCCCEEEECCHHH--CCCCCCCC---CHHHHHHH---HHHHHHHHH--HHHH-CCCEEEEEECCCCCCCCCCCCC
Q ss_conf 402244474677671353--25664432---11378899---999999999--9882-7919997713822016899998
Q gi|254780332|r 337 RLKRQRGLDLLIVDYIQL--MTTSKKIE---ENRVLEIT---GITMALKAL--AKEL-NIPIIALSQLSRQVENRDNKRP 405 (504)
Q Consensus 337 ~~~~~~gi~~vvIDYLql--i~~~~~~~---~~r~~~i~---~is~~lK~l--A~e~-~ipvi~lsQLnR~~e~r~~krP 405 (504)
.++++-|+-+|+|=|=|- |+-+.+-. ..+-.|++ +|...=++. |.=. +|-|+-..-+-|..++.--.-|
T Consensus 145 ~~~~~LGiT~v~VTHDQ~EA~TMsDRI~~l~~Gki~Q~~~PeeiY~~P~~~FvA~FiGe~nvf~~~~~e~~~~~~v~~~P 224 (331)
T TIGR01187 145 TLQEQLGITFVFVTHDQEEALTMSDRIAILRKGKIAQIGTPEEIYEEPSNLFVARFIGEINVFEATVIERKEEQLVLAGP 224 (331)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHCEEEEECCCEEEEECCCHHHHHCCCCCCCEEECCCEEEEEEEEEEECCCCEEECCC
T ss_conf 99872682899970184898754020242138758883684687517775310001061455567888625786684287
Q ss_pred CC---CCCCCCCHHHHHCCEEEEEECHHHCC
Q ss_conf 40---10143242233138788972556616
Q gi|254780332|r 406 QL---SDLRESGSIEQDADVVLFVIRDEYYI 433 (504)
Q Consensus 406 ~l---sDLr~Sg~IEqdAD~v~~l~R~~~y~ 433 (504)
.. -+.+.+=+.+.+--.-+.| |||.=.
T Consensus 225 ~~~r~~~~~~~~~v~~~~~~~v~L-RPE~~~ 254 (331)
T TIGR01187 225 VEGRECKIYEDLPVEAKQPLHVVL-RPEKIS 254 (331)
T ss_pred CCCEEEEEEECCCCCCCCCEEEEE-CCCCEE
T ss_conf 431477653216667775168998-387126
No 478
>PRK13695 putative NTPase; Provisional
Probab=93.96 E-value=0.081 Score=33.30 Aligned_cols=136 Identities=28% Similarity=0.393 Sum_probs=63.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 77621310027699999999998510111233333212479758-99958521799987899998741011000121---
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQTEVPSSKIRRGE--- 297 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~s~I~~~~i~~g~--- 297 (504)
+.|.|+||+|||++...++..... .|.+| .|++-|.-.. .. ..|.....+.+|.
T Consensus 6 I~iTG~PGvGKTTli~Kv~~~L~~---------------~g~~v~GF~T~Evre~--G~-----R~GF~vv~l~~g~~~~ 63 (174)
T PRK13695 6 IGITGMPGVGKTTLVLKIAELLAR---------------EGYKVGGFITEEVREG--GK-----RIGFKIIDLDTGEEGI 63 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEEEEEECC--CE-----EEEEEEEECCCCCEEE
T ss_conf 998789998899999999999863---------------6961746995256038--82-----8505999905885687
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH-HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3768899899999998627807825899889999998-864022444746776713532566443211378899999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATR-ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMAL 376 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~-~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~l 376 (504)
|...+.. ..-... + |..+.. ..+.+... +++. ....+++|||=++-|.-.+.. .. ..|-..
T Consensus 64 lA~~~~~----~~~~Vg--k-Y~V~~~--~~e~~~~~~l~~a--~~~~dlivIDEIG~MEl~s~~----F~--~~V~~~- 125 (174)
T PRK13695 64 LARVGAV----SRPRVG--K-YVVNLE--DLERIAIPAISRA--LREADLIIIDEIGPMELKSKK----FV--SAVEEV- 125 (174)
T ss_pred EEECCCC----CCCCCC--C-EEEEHH--HHHHHHHHHHHHC--CCCCCEEEEECCCHHHHHHHH----HH--HHHHHH-
T ss_conf 6753788----985545--6-687168--9789989999835--357879999631033110499----99--999999-
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 999988279199977138220168999984010143
Q gi|254780332|r 377 KALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRE 412 (504)
Q Consensus 377 K~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~ 412 (504)
.+-+.|+++.-+ +|.+..+|-
T Consensus 126 ----L~s~kpvl~tih-----------~p~v~~ik~ 146 (174)
T PRK13695 126 ----LKSEKPVIATVH-----------RPVVQRIRS 146 (174)
T ss_pred ----HCCCCCEEEEEC-----------HHHHHHHHC
T ss_conf ----738998999977-----------588898633
No 479
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.96 E-value=0.071 Score=33.75 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 432101377655641677267762131002769999999999851
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
+.||++.+|-++- +.+|+=+-|-|-+|+|||+++..+|.|+...
T Consensus 53 l~TGIkaID~l~p-ig~GQR~gIfgg~GvGKs~L~~~i~~~~~~~ 96 (276)
T cd01135 53 IQTGISAIDGMNT-LVRGQKIPIFSGSGLPHNELAAQIARQAGVV 96 (276)
T ss_pred CCCCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 2258535405467-2367663320578863678999999987751
No 480
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.95 E-value=0.27 Score=29.28 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=65.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
-.+|-+.|..| +|-|||+-|+-+|..++- .|.+|+++.+==+.....+..+....++.....-.
T Consensus 20 ~~kGli~VytG-~GKGKTTAAlGlalRA~G---------------~G~rV~ivQFlKg~~~~GE~~~l~~~~i~~~~~g~ 83 (190)
T PRK05986 20 EEKGLLIVHTG-NGKGKSTAAFGMALRAVG---------------HGKKVGVVQFIKGAWSTGERNLLEGPGVEFHVMGT 83 (190)
T ss_pred CCCCEEEEEEC-CCCCHHHHHHHHHHHHHC---------------CCCEEEEEEEECCCCCHHHHHHHCCCCCEEEECCC
T ss_conf 46867999806-998718899999999836---------------99889999994488545778874379828998789
Q ss_pred CCC---CHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 213---76889989999999862780782589988999999886402244474677671353256644321137889999
Q gi|254780332|r 296 GEL---TRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGI 372 (504)
Q Consensus 296 g~l---~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~i 372 (504)
|-. .+.+- ... ...+.-..+++.......|+||.|=+...-.-+- ....++
T Consensus 84 g~~~~~~~~e~-d~~-------------------~a~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gl------l~~eev 137 (190)
T PRK05986 84 GFTWETQDRER-DIA-------------------AAREGWEEAKRMLADESYDLVVLDELTYALKYGY------LDLEEV 137 (190)
T ss_pred CCCCCCCCCHH-HHH-------------------HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCC------CCHHHH
T ss_conf 98577897189-999-------------------9999999999998588888895376799985599------589999
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 99999999882791999
Q gi|254780332|r 373 TMALKALAKELNIPIIA 389 (504)
Q Consensus 373 s~~lK~lA~e~~ipvi~ 389 (504)
-.-|+ .+--++-||+
T Consensus 138 i~~L~--~rp~~~evVL 152 (190)
T PRK05986 138 LEALN--NRPGMQHVVI 152 (190)
T ss_pred HHHHH--HCCCCCEEEE
T ss_conf 99998--2899876999
No 481
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.94 E-value=0.35 Score=28.48 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCCCCCCCC-CHHHHHHHHHH--CCCCEEEEECCCHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 236644321-01377655641--6772677621310027-----------699999999998510111233333212479
Q gi|254780332|r 197 GRLAGVSTG-IQTLDKQMGGL--QRSDLIIIAGRPGMGK-----------TSLATNIAYNVADAYKAELQTDGSYKTING 262 (504)
Q Consensus 197 ~~~~Gi~TG-~~~LD~~~gGl--~~G~l~Viaarpg~GK-----------TalalniA~~~A~~~~~~~~~~~~~~~~~g 262 (504)
+...|.-|+ |++-....--+ ..+.+.|+|-.|+ .. .+++.++|..+.+..-...
T Consensus 579 ~~~AG~gTdTlpg~~~~~lPl~~~~~~~gvlgv~~~-~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~----------- 646 (890)
T COG2205 579 GKPAGAGTDTLPGAKYLYLPLKSGGKVLGVLGVEPG-LSPLLAPEQRRLLDAVLTQIALALERVTLAEE----------- 646 (890)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 976655777789986268651568843799986677-77667827789999999999999999999998-----------
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH---HCCCCCC---------CCCCCHHHHHHH-----------HHHHH------HH
Q ss_conf 7589995852179998789999874---1011000---------121376889989-----------99999------98
Q gi|254780332|r 263 GIVGFYSLEMSSEQLATRIISEQTE---VPSSKIR---------RGELTRPDYEKI-----------VACSQ------VM 313 (504)
Q Consensus 263 ~~Vl~fSlEMs~~el~~R~is~~s~---I~~~~i~---------~g~l~~~e~~~i-----------~~a~~------~l 313 (504)
..--.+++..+++-.-+++++|+ -|+..|. ...+++.+...+ ...+. ++
T Consensus 647 --~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi 724 (890)
T COG2205 647 --AEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRL 724 (890)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --999999999999999999874102467289886148886423401593769999999999999999999987767777
Q ss_pred HHCCEEEECCCCCCHHHHHHHH-HHHCCC---CCCCEEEECCHHHCCCCCC
Q ss_conf 6278078258998899999988-640224---4474677671353256644
Q gi|254780332|r 314 QKLPLYIDQTGGISMSQLATRA-RRLKRQ---RGLDLLIVDYIQLMTTSKK 360 (504)
Q Consensus 314 ~~~~l~I~d~~~~ti~~I~~~~-r~~~~~---~gi~~vvIDYLqli~~~~~ 360 (504)
.+..+-+.-.+ ..+.++...+ .++.+. +.+.+-+=+-|.|+..++.
T Consensus 725 ~sG~~~l~~~~-~~veEvVg~Al~r~~k~~~~~~i~v~~~~dl~li~~D~~ 774 (890)
T COG2205 725 QSGGVNLKLDW-VLVEEVVGEALQRLRKRFTGHKIVVSVPVDLPLIHVDSP 774 (890)
T ss_pred HCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCHH
T ss_conf 13786414452-039999999999866304783589955888716764788
No 482
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.89 E-value=0.28 Score=29.18 Aligned_cols=98 Identities=15% Similarity=0.265 Sum_probs=52.8
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 77621310027699999999998510111233333212479758999585217999878999987410---110001213
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVP---SSKIRRGEL 298 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~---~~~i~~g~l 298 (504)
+|+-|.||+||+|.|-.++.+.- +.++| ..++....+...+.+. -.-+.+|.|
T Consensus 3 iillGpPGsGKgT~a~~l~~~~~--------------------~~hiS----tGdllR~~i~~~t~lg~~ik~~i~~G~L 58 (225)
T PTZ00088 3 IVLFGAPGVGKGTFAEILSKKEK--------------------LKHIN----MGNILRDEIKKESNIGKEIHKVVRSGNL 58 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--------------------CEEEC----HHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 99989999987999999999879--------------------90687----8999999997399889999999977984
Q ss_pred CHHHH--HHHHHHHHHHHHC----C-EEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 76889--9899999998627----8-0782589988999999886402244474677
Q gi|254780332|r 299 TRPDY--EKIVACSQVMQKL----P-LYIDQTGGISMSQLATRARRLKRQRGLDLLI 348 (504)
Q Consensus 299 ~~~e~--~~i~~a~~~l~~~----~-l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vv 348 (504)
-+++. +-+...+.+.... + +.+|-.|. |+.|-...- ....+++||
T Consensus 59 VpD~iv~~lv~~~l~~~~~~~~~~~GfILDGfPR-t~~QA~~L~----~~~~id~vi 110 (225)
T PTZ00088 59 VADELIIKIVHDEIAKILAKDGHFKGFILDGFPR-NLLQCKELI----EITNIDLFV 110 (225)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-CHHHHHHHH----HHCCCCEEE
T ss_conf 6689999999999984442464347436527888-779999999----746788799
No 483
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.87 E-value=0.6 Score=26.67 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=21.4
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 641677267762131002769999999999
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
.|+.|-.=+.+.|.||+|||.+|--+|...
T Consensus 254 ~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~ 283 (491)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANEW 283 (491)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599999879997999987899999998663
No 484
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=93.81 E-value=0.53 Score=27.08 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~ 243 (504)
|...+.|-.+..+-++-|.||+||||..--+|...
T Consensus 35 L~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeL 69 (490)
T pfam03215 35 LKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKEL 69 (490)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99985477773189987989988999999999975
No 485
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.79 E-value=0.11 Score=32.18 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=30.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 6776213100276999999999985101112333332124797589995852
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM 272 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM 272 (504)
-+.|.|.-|+||||.+.|+|...|.. |++|+.+-+.-
T Consensus 3 ~ia~yGKGGVGKTTTavNLAaALA~~---------------GkkVLlID~DP 39 (292)
T PRK13230 3 QIAFYGKGGIGKSTTVCNLAAALSKS---------------GKKVIVVGCDP 39 (292)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---------------CCEEEEECCCC
T ss_conf 79991799857898999999999987---------------99599977679
No 486
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.79 E-value=0.068 Score=33.88 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=35.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 6776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
+.|....-|+|||+++.|+|...|+.++..+..+.. .||.--.+|.++.+..
T Consensus 4 Iav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlD---pQ~~l~~~~g~~~~~~ 55 (246)
T TIGR03371 4 IAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLD---PQNLLRLHFGMDWSVR 55 (246)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCCHHHHCCCCCCCC
T ss_conf 999759998549999999999999689978999759---9985032248887534
No 487
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.78 E-value=0.27 Score=29.35 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHCCCCHHHCCHHH-H--HHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 868643888973179832359489-9--99999622---11222367787878----99999999987655
Q gi|254780332|r 77 TANPVTVKTFLSDQDMLGELTVPQ-Y--LARLASEA---VSIINTEDYGRIIY----GLALRRTLITIGEE 137 (504)
Q Consensus 77 ~iD~itl~~~L~~~~~l~~igg~~-y--L~~L~~~~---~s~~n~~~ya~~Ik----e~~~~R~li~~~~~ 137 (504)
.++...+.+.+.++....+-.|-. | +..+..+. ...+.+-|.|++|. =.++.|+++-.+.+
T Consensus 234 ~i~~~~~~~~~~~~~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~fIaRRLii~AsE 304 (726)
T PRK13341 234 HINLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASE 304 (726)
T ss_pred EECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 43599999998566605687751788999999998654896789999999997599889999999999984
No 488
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.77 E-value=0.23 Score=29.87 Aligned_cols=42 Identities=31% Similarity=0.514 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 644321013776556416772-67762131002769999999999
Q gi|254780332|r 200 AGVSTGIQTLDKQMGGLQRSD-LIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~gGl~~G~-l~Viaarpg~GKTalalniA~~~ 243 (504)
..++||...+|-++- ...|+ +-|+|| +|+|||+|.-.||.+.
T Consensus 145 ~~l~tGVRaIDgllT-~G~GQRiGIFAg-sGVGKStLLgMiar~t 187 (441)
T COG1157 145 EPLDTGVRAIDGLLT-CGKGQRIGIFAG-SGVGKSTLLGMIARNT 187 (441)
T ss_pred CCCCCCCEEEECCCC-CCCCCEEEEEEC-CCCCHHHHHHHHHCCC
T ss_conf 645456144401002-246746788716-9986899999996246
No 489
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=93.72 E-value=0.63 Score=26.49 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=3.4
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999986
Q gi|254780332|r 305 KIVACSQVMQ 314 (504)
Q Consensus 305 ~i~~a~~~l~ 314 (504)
.+..|...|.
T Consensus 385 a~~~A~~~L~ 394 (812)
T PRK11664 385 NLAAAKRLLQ 394 (812)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 490
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=93.71 E-value=0.64 Score=26.48 Aligned_cols=124 Identities=19% Similarity=0.358 Sum_probs=66.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE-----------------------EEE---
Q ss_conf 167726776213100276999999999985101112333332124797589-----------------------995---
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVG-----------------------FYS--- 269 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl-----------------------~fS--- 269 (504)
+..|+.+.+-||=|+|||||.+++.= .-+...-.. ..+|.++- +||
T Consensus 15 ~~~G~~~aLlG~NGaGKsTLl~~LnG-~LrP~~G~v-------~~dG~~l~YsrkgL~~~R~~V~~VfQdPDDQlF~a~V 86 (190)
T TIGR01166 15 VERGEVLALLGANGAGKSTLLLHLNG-LLRPQSGKV-------LLDGEPLDYSRKGLLEVRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCC-CCCCCCCEE-------EECCEECCCCCHHHHHHCCEEEEEEECHHHHCCCCCC
T ss_conf 20571689872899857899887436-777975558-------7678540357244675250300376263442026762
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHHHHHHCCEEEECCC--CCC---HHHH
Q ss_conf ----------852179998789999874101100012---1376889989999999862780782589--988---9999
Q gi|254780332|r 270 ----------LEMSSEQLATRIISEQTEVPSSKIRRG---ELTRPDYEKIVACSQVMQKLPLYIDQTG--GIS---MSQL 331 (504)
Q Consensus 270 ----------lEMs~~el~~R~is~~s~I~~~~i~~g---~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~t---i~~I 331 (504)
|=.+.+|+-.|.-=..+-|..+.++.. .||-.|.+|+.-|..---+-.+.|-|.| ++. ..+|
T Consensus 87 ~~DVaFGPlNLGL~e~Ev~~RV~eAL~~vg~~~~~~rp~h~LS~GekkRvAIAGAvAM~Pd~l~LDEPTAGLDp~G~~q~ 166 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGISGLEERPTHLLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGAEQL 166 (190)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf 21003354567337157678789999860632244122411558613577777588616634664278889787479999
Q ss_pred HHHHHHHCCCCCCCEEE
Q ss_conf 99886402244474677
Q gi|254780332|r 332 ATRARRLKRQRGLDLLI 348 (504)
Q Consensus 332 ~~~~r~~~~~~gi~~vv 348 (504)
.+.++++.. .|-.+||
T Consensus 167 ~~~l~~L~~-~G~tvv~ 182 (190)
T TIGR01166 167 LAILRRLRA-EGTTVVI 182 (190)
T ss_pred HHHHHHHHH-CCCEEEE
T ss_conf 999887872-3998999
No 491
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.45 Score=27.64 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCC---------CCCEEEEEECCC
Q ss_conf 210137765564167726776213100276999999999985101112333--332124---------797589995852
Q gi|254780332|r 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD--GSYKTI---------NGGIVGFYSLEM 272 (504)
Q Consensus 204 TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~--~~~~~~---------~g~~Vl~fSlEM 272 (504)
+=|..|+-. |.+|+..+|-|+-|.|||++.--+| ..+.......... ...... -|+.-. +-.||
T Consensus 16 ~lf~~L~f~---l~~Ge~~~i~G~NG~GKTtLLRila-GLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g-iK~eL 90 (209)
T COG4133 16 TLFSDLSFT---LNAGEALQITGPNGAGKTTLLRILA-GLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG-IKTEL 90 (209)
T ss_pred EEECCEEEE---ECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCCHH
T ss_conf 021230478---7488779998999875889999997-126877775785478873203568888788606534-43220
Q ss_pred CHHHHHHHHHHHHHH-------------HCCC---CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 179998789999874-------------1011---000121376889989999999862780782589988
Q gi|254780332|r 273 SSEQLATRIISEQTE-------------VPSS---KIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGIS 327 (504)
Q Consensus 273 s~~el~~R~is~~s~-------------I~~~---~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~t 327 (504)
+..|-. |+.....+ |.+. .+--+.|+..+.+++.-|.=.++..||||-|.|.-.
T Consensus 91 Ta~ENL-~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 91 TALENL-HFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred HHHHHH-HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCC
T ss_conf 298888-9999973887520499999973866534460222364689999999997278871664485322
No 492
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.67 E-value=0.11 Score=32.15 Aligned_cols=33 Identities=39% Similarity=0.636 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 776213100276999999999985101112333332124797589995
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS 269 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS 269 (504)
+++++.-|+|||+++.|+|...++ +|++|+.+.
T Consensus 2 i~~~~~kGvGKTT~a~~La~~la~---------------~g~~Vl~vD 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK---------------RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEC
T ss_conf 898589977689999999999998---------------899699986
No 493
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.64 E-value=0.65 Score=26.39 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHH-HC-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 433677899999874-11-2366443210137765564167726776213100276999999999985101112333332
Q gi|254780332|r 180 DAMTVAIDMAGQAFN-RD-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY 257 (504)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~ 257 (504)
+.+..+...+-+... ++ ..+.|-..=+..+=+++. =+..+=.|+-|-||+||||++-.+|..++... .|..
T Consensus 160 ~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~-RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~-VP~~----- 232 (823)
T CHL00095 160 PTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILG-RRTKNNPILIGEPGVGKTAIAEGLAQRIANRD-VPDI----- 232 (823)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHCCCCCEEECCCCCCHHHHHHHHHHHHHCCC-CCHH-----
T ss_conf 5699997888999983899987595699999999997-73248850237999879999999999760889-9868-----
Q ss_pred CCCCCCEEEEEECCCCHH--------HHHHHHHHHHHH
Q ss_conf 124797589995852179--------998789999874
Q gi|254780332|r 258 KTINGGIVGFYSLEMSSE--------QLATRIISEQTE 287 (504)
Q Consensus 258 ~~~~g~~Vl~fSlEMs~~--------el~~R~is~~s~ 287 (504)
=+..-+|||.|+.- +.-.|+-+....
T Consensus 233 ----L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~e 266 (823)
T CHL00095 233 ----LEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDE 266 (823)
T ss_pred ----HCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf ----7599368842887753342226799999999999
No 494
>KOG0054 consensus
Probab=93.64 E-value=0.65 Score=26.39 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCEE---EEEECCCCHHHHHHHHHHHHH
Q ss_conf 16772677621310027699999999998510------111233333212479758---999585217999878999987
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAY------KAELQTDGSYKTINGGIV---GFYSLEMSSEQLATRIISEQT 286 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~------~~~~~~~~~~~~~~g~~V---l~fSlEMs~~el~~R~is~~s 286 (504)
+++|+++.|-|.+|.|||+|..-+.=..-... -...+.....|..+| +| ..|--+|.++..-+=+-++.=
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ng-TvreNILFG~~~d~~rY~~Vi~aC~L 622 (1381)
T KOG0054 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACAL 622 (1381)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCC-CHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 62898899989998888999999965875567559984748986665564178-56675006870359999999997067
Q ss_pred HHCCCCC---------CCC-CCCHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 4101100---------012-13768899899999998627807825899
Q gi|254780332|r 287 EVPSSKI---------RRG-ELTRPDYEKIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 287 ~I~~~~i---------~~g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~ 325 (504)
.-++.-+ .+| +|+-.+..|+.-|..-.++..+|+-|.|=
T Consensus 623 ~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054 623 KKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 7679746898753577886277676999999999986579989887963
No 495
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.61 E-value=0.086 Score=33.08 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 4321013776556416772677621310027699999999998
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA 244 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A 244 (504)
+.||++.+|-++- +.+|+=+-|-|.+|+|||+|+..++.|+.
T Consensus 124 l~TGIraID~l~p-ig~GQRigIfgg~GvGKt~Ll~~i~~~~~ 165 (418)
T TIGR03498 124 LDTGVRVIDTFLP-LCRGQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred CCCCCCHHHHCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 3157602120155-02576641137899988899999987507
No 496
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.61 E-value=0.66 Score=26.35 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64167726776213100276999999999985101112333332124797589995852179998789999874101100
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKI 293 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i 293 (504)
.|- +|-++-+.|.||.|||++|-.+....-. .|.++.++ ...++-. .++..-
T Consensus 20 ~~~-kg~viWlTGLSGSGKTTlA~~L~~~L~~---------------~~~~~~~L----DGD~lR~-~l~~dl------- 71 (198)
T PRK03846 20 HGH-KGVVLWFTGLSGSGKSTVAGALEEALHE---------------LGVHTYLL----DGDNVRH-GLCSDL------- 71 (198)
T ss_pred HCC-CCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEE----CHHHHHH-HHCCCC-------
T ss_conf 689-9869998799999889999999999997---------------59975997----7799987-436678-------
Q ss_pred CCCCCCHHHH----HHHHHHHHHHHHCCEEEECCCCCC-HHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 0121376889----989999999862780782589988-99999988640224447467767
Q gi|254780332|r 294 RRGELTRPDY----EKIVACSQVMQKLPLYIDQTGGIS-MSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 294 ~~g~l~~~e~----~~i~~a~~~l~~~~l~I~d~~~~t-i~~I~~~~r~~~~~~gi~~vvID 350 (504)
.++.++. .++...++.+.+..+.+-- +.++ ..++|..+|........--|+||
T Consensus 72 ---gfs~~dR~~n~~r~~~lak~l~~~G~iVIv-s~Isp~~~~R~~~R~~~~~~~f~EIyl~ 129 (198)
T PRK03846 72 ---GFSDADRKENIRRVGEVAKLMVDAGLVVLT-AFISPHRAERQMVRERLGEGEFIEVFVD 129 (198)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf ---989999999999999999999858983664-1478879999999986787757999943
No 497
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=93.60 E-value=0.43 Score=27.80 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 677267762131002769999999999851011123333321247975899958-5217999878999987410110001
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL-EMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl-EMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
..|.+.|+|| ||.|||+....-..+........ ...++.+|+ .-.+.|+-.|+.....+-....+.-
T Consensus 12 ~~~~llV~Ag-AGSGKT~~L~~Ri~~li~~~~~~-----------p~~IL~lTFT~kAA~Em~~Ri~~~l~~~~~~~~~i 79 (494)
T pfam00580 12 LGGPLLVLAG-AGTGKTRVLTERIAYLILEGGID-----------PEEILAVTFTNKAAREMKERILKLLGKAEASELNI 79 (494)
T ss_pred CCCCEEEEEE-CCHHHHHHHHHHHHHHHHHCCCC-----------HHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 9999799971-87068999999999999818999-----------74787670289999999999998738344688678
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 2137688998999999986278
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKLP 317 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~~ 317 (504)
+++..--..-+.+....+...+
T Consensus 80 ~T~Hsf~~~iLr~~~~~~g~~~ 101 (494)
T pfam00580 80 STFHSFCLRILRKYANRIGDLL 101 (494)
T ss_pred EHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5499999999999899837777
No 498
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.58 E-value=0.36 Score=28.34 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121376
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
++|+.|-+|+|||++|-.+|... .+.-+|=....=..-..-+.+|+|+..-.+.....
T Consensus 1 liiv~GvsGsGKSTia~~La~~l----------------------g~~~i~~D~~h~~~n~~km~~G~pL~d~dr~~wl~ 58 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL----------------------GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQ 58 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----------------------CCCEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 98999189999999999999971----------------------99564154335476899986799988523789999
Q ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 88998999999986278078258998899999988640224447467767
Q gi|254780332|r 301 PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 301 ~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvID 350 (504)
.-...+..... ...+-.|.+++.+ =..-|..+|......++.+|+.+
T Consensus 59 ~l~~~~~~~~~--~~g~~vVv~cSaL-k~~yR~~l~~~~~~~~v~fi~L~ 105 (150)
T cd02021 59 ALTDALLAKLA--SAGEGVVVACSAL-KRIYRDILRGGAANPRVRFVHLD 105 (150)
T ss_pred HHHHHHHHHHH--HCCCCEEEEEHHH-HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999999998--4499879984332-39999999952768985899986
No 499
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=93.58 E-value=0.43 Score=27.74 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CCCCCCCC
Q ss_conf 6776213100276999999999985101112333332124797589995852179998789999874101--10001213
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPS--SKIRRGEL 298 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~--~~i~~g~l 298 (504)
.+.|-|-||.|||+++=+| -..-++||+.|| .+.++=.-+|+. -.+..-+-
T Consensus 15 ~~lIYG~~G~GKTS~~K~l----------------------~GktL~l~~D~S-----SkVL~G~~nvdiim~~~d~~~~ 67 (229)
T TIGR01618 15 RYLIYGKPGLGKTSTIKYL----------------------PGKTLVLSLDKS-----SKVLAGDENVDIIMADLDDEKP 67 (229)
T ss_pred EEEEECCCCCCCCCEEEEC----------------------CCCEEEEECCCC-----CCCCCCCCCCEEEEEEECCCCC
T ss_conf 6888758988723056645----------------------887898836786-----4434689983389986069984
Q ss_pred CHHHHHHHHHHHH-HHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7688998999999-986278078258998899999988640224447467767135325664432113788999999999
Q gi|254780332|r 299 TRPDYEKIVACSQ-VMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK 377 (504)
Q Consensus 299 ~~~e~~~i~~a~~-~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK 377 (504)
..+..+.+.++.+ ...++...|-| +|.++...+=...=+.+ +.......--|+.+..--..+=
T Consensus 68 ~~~~~e~~~~~~~~~~~~Y~niViD----Nis~lq~~~L~~~gr~~------------K~~~~p~~q~Y~~~~~~~~d~~ 131 (229)
T TIGR01618 68 IQEMVEFYKELQNIQAEEYDNIVID----NISELQKLWLINLGREA------------KNGRSPELQHYQKLDLYFLDLL 131 (229)
T ss_pred HHHHHHHHHHHHCCHHHCCCEEEEE----CHHHHHHHHHHHCCCCC------------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7899999999732253457658981----42789999998468442------------4578865000368889999999
Q ss_pred HHHHH-HCCCEEEEE-ECCCCCCCCCCC--CCCCCCCCCC
Q ss_conf 99988-279199977-138220168999--9840101432
Q gi|254780332|r 378 ALAKE-LNIPIIALS-QLSRQVENRDNK--RPQLSDLRES 413 (504)
Q Consensus 378 ~lA~e-~~ipvi~ls-QLnR~~e~r~~k--rP~lsDLr~S 413 (504)
..=++ .+.-|+++| |..++...-.+. ---+.|+|++
T Consensus 132 ~vl~~l~~~~i~~tAwe~~~~~~~e~G~iy~ry~pdir~k 171 (229)
T TIGR01618 132 TVLKELKNKNIYVTAWEDTNQLSLESGQIYNRYLPDIREK 171 (229)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9998558987999876566753401146687666775478
No 500
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=93.58 E-value=0.33 Score=28.64 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 77621310027699999999998510111233333212479758999585217999878999987410110001213768
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRP 301 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~ 301 (504)
+++.|.||.|||+ ..|.+|...+.+.-.+....+...
T Consensus 1 iLl~GppGtGKT~-------------------------------------------~a~~la~~~~~~~~~v~~~~~~~~ 37 (131)
T pfam00004 1 LLLYGPPGTGKTT-------------------------------------------LAKAVAKELGAPFIEISGSELVSK 37 (131)
T ss_pred CEEECCCCCCHHH-------------------------------------------HHHHHHHHHCCCCEECCCCCCCCC
T ss_conf 9878999999999-------------------------------------------999999997898533242012223
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHH--HHHHHHHHHHH
Q ss_conf 8998999999986278078258998899999988640224447467767135325664432113788--99999999999
Q gi|254780332|r 302 DYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLE--ITGITMALKAL 379 (504)
Q Consensus 302 e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~--i~~is~~lK~l 379 (504)
..+-+...|+......+...+ -+++||-+.-+-............ ++.+-..+-.+
T Consensus 38 ---------------------~~g~~~~~i~~~f~~a~~~~p-~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 95 (131)
T pfam00004 38 ---------------------YVGESEKRLRELFEAAKKLAP-CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGF 95 (131)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf ---------------------345068889999999997499-1898311677751678888875132687899998502
Q ss_pred -HHHHCCCEEEEE
Q ss_conf -988279199977
Q gi|254780332|r 380 -AKELNIPIIALS 391 (504)
Q Consensus 380 -A~e~~ipvi~ls 391 (504)
...-++.||+.+
T Consensus 96 ~~~~~~v~~I~tT 108 (131)
T pfam00004 96 TSSLSKVIVIAAT 108 (131)
T ss_pred CCCCCCEEEEEEC
T ss_conf 2468876999975
Done!