HHsearch alignment for GI: 254780332 and conserved domain: pfam00004

>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=93.58  E-value=0.33  Score=28.64  Aligned_cols=105  Identities=19%  Similarity=0.288  Sum_probs=0.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             77621310027699999999998510111233333212479758999585217999878999987410110001213768
Q gi|254780332|r  222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRP  301 (504)
Q Consensus       222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~  301 (504)
T Consensus         1 iLl~GppGtGKT~-------------------------------------------~a~~la~~~~~~~~~v~~~~~~~~   37 (131)
T pfam00004         1 LLLYGPPGTGKTT-------------------------------------------LAKAVAKELGAPFIEISGSELVSK   37 (131)
T ss_pred             CEEECCCCCCHHH-------------------------------------------HHHHHHHHHCCCCEECCCCCCCCC
T ss_conf             9878999999999-------------------------------------------999999997898533242012223


Q ss_pred             HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHH--HHHHHHHHHHH
Q ss_conf             8998999999986278078258998899999988640224447467767135325664432113788--99999999999
Q gi|254780332|r  302 DYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLE--ITGITMALKAL  379 (504)
Q Consensus       302 e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~--i~~is~~lK~l  379 (504)
T Consensus        38 ---------------------~~g~~~~~i~~~f~~a~~~~p-~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~   95 (131)
T pfam00004        38 ---------------------YVGESEKRLRELFEAAKKLAP-CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGF   95 (131)
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             ---------------------345068889999999997499-1898311677751678888875132687899998502


Q ss_pred             -HHHHCCCEEEEE
Q ss_conf             -988279199977
Q gi|254780332|r  380 -AKELNIPIIALS  391 (504)
Q Consensus       380 -A~e~~ipvi~ls  391 (504)
T Consensus        96 ~~~~~~v~~I~tT  108 (131)
T pfam00004        96 TSSLSKVIVIAAT  108 (131)
T ss_pred             CCCCCCEEEEEEC
T ss_conf             2468876999975