HHsearch alignment for GI: 254780332 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=99.35 E-value=6.7e-10 Score=94.83 Aligned_cols=224 Identities=19% Similarity=0.246 Sum_probs=140.4
Q ss_pred CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk---------------~gg~~~~iD~E~a~d~ 94 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQK---------------AGGTAAFIDAEHALDP 94 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEHHHHCCH
T ss_conf 5446158089999875899778708999889877789999999999973---------------4993899853660598
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
T Consensus 95 ~~a----~~lGVD~~~l~-------------------------~~-qpd-~~Eqal~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 95 VYA----KKLGVDIDNLL-------------------------VS-QPD-TGEQALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred HHH----HHCCCCHHHEE-------------------------EE-CCC-HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 899----98098802538-------------------------97-788-399999999998537997659982534567
Q ss_pred CCCCCC--------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 664432--------113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 357 TSKKIE--------ENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 357 ~~~~~~--------~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 144 p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k~~~~~IfiNQ~R~kiG~m-fg~pe~t--~GG~Alkf~aSvri~l~k 220 (322)
T pfam00154 144 PKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIRMKIGVM-FGNPETT--TGGNALKFYASVRLDIRR 220 (322)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCC-CCCCCCC--CCCCHHHCCEEEEEEEEE
T ss_conf 6888752432232135799999999999999730585499976551114664-6998547--786425411003787765
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE---EEEEEEECCCCCEEE
Q ss_conf 5661644233332221110000001123388389999740899725---999997468540200
Q gi|254780332|r 429 DEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG---TVTLAFQAEFTRFSA 489 (504)
Q Consensus 429 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g---~~~~~f~~~~~~f~~ 489 (504)
T Consensus 221 ~~~-------iK-----------~g~~~vG~~i~~kvvKnK~a~P~~~ae~~i~y~~GId~~~~ 266 (322)
T pfam00154 221 IGA-------IK-----------KGEEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISKEGE 266 (322)
T ss_pred ECC-------CC-----------CCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHH
T ss_conf 010-------14-----------67863369999999836748998679999615887664325