HHsearch alignment for GI: 254780332 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=0 Score=368.87 Aligned_cols=185 Identities=55% Similarity=0.821 Sum_probs=176.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 44321013776556416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 201 GVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 201 Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 1 GIpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~--------------~g~~Vl~~slEm~~~~~~~R 66 (186)
T pfam03796 1 GLPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALK--------------QDKPVLFFSLEMSAEQLAER 66 (186)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHH
T ss_conf 9388807788642698888179999679998799999999999997--------------09966875475529999999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC
Q ss_conf 99998741011000121376889989999999862780782589988999999886402244474677671353256644
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK 360 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~ 360 (504)
T Consensus 67 ~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~ 146 (186)
T pfam03796 67 LLSSESRISSSKLRSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKA 146 (186)
T ss_pred HHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC
T ss_conf 99986267655541251216799999999999853986884799998999999999999855998899748986367788
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf -321137889999999999998827919997713822016
Q gi|254780332|r 361 -IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 361 -~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
T Consensus 147 ~~~~~r~~~v~~i~~~Lk~lA~e~~i~ii~~sQlNR~~E~ 186 (186)
T pfam03796 147 SKSENRQQEISEISRSLKALAKELNIPVIALSQLSRAVEQ 186 (186)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 8775599999999999999999979918997225753359