HHsearch alignment for GI: 254780332 and conserved domain: pfam03796

>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00  E-value=0  Score=368.87  Aligned_cols=185  Identities=55%  Similarity=0.821  Sum_probs=176.2

Q ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             44321013776556416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r  201 GVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR  280 (504)
Q Consensus       201 Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R  280 (504)
T Consensus         1 GIpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~--------------~g~~Vl~~slEm~~~~~~~R   66 (186)
T pfam03796         1 GLPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALK--------------QDKPVLFFSLEMSAEQLAER   66 (186)
T ss_pred             CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHH
T ss_conf             9388807788642698888179999679998799999999999997--------------09966875475529999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC
Q ss_conf             99998741011000121376889989999999862780782589988999999886402244474677671353256644
Q gi|254780332|r  281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK  360 (504)
Q Consensus       281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~  360 (504)
T Consensus        67 ~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~  146 (186)
T pfam03796        67 LLSSESRISSSKLRSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKA  146 (186)
T ss_pred             HHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC
T ss_conf             99986267655541251216799999999999853986884799998999999999999855998899748986367788


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             -321137889999999999998827919997713822016
Q gi|254780332|r  361 -IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN  399 (504)
Q Consensus       361 -~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~  399 (504)
T Consensus       147 ~~~~~r~~~v~~i~~~Lk~lA~e~~i~ii~~sQlNR~~E~  186 (186)
T pfam03796       147 SKSENRQQEISEISRSLKALAKELNIPVIALSQLSRAVEQ  186 (186)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             8775599999999999999999979918997225753359