HHsearch alignment for GI: 254780332 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=97.17 E-value=0.001 Score=47.73 Aligned_cols=69 Identities=30% Similarity=0.416 Sum_probs=47.9
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6416772677621310027699999999998510111233333212479758999585217999878999987410110
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSK 292 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~ 292 (504)
T Consensus 45 ~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~--------i~g--SEvyS~E~kKTE~L~qafRrsIGvrIkE 113 (395)
T pfam06068 45 EGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCP--------ISG--SEVYSLEMKKTEALTQAFRKAIGVRIKE 113 (395)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--------EEH--HEEECCCCCHHHHHHHHHHHHHCEEEEE
T ss_conf 27757738998779998889999999997487997345--------001--1121256548899999998875568678