HHsearch alignment for GI: 254780332 and conserved domain: pfam08423
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=99.50 E-value=1.2e-11 Score=108.18 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=138.5
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
T Consensus 22 ~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~---------~gg~~g~vvyIDTEg~f~-- 90 (261)
T pfam08423 22 VIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLE---------MGGGEGKALYIDTEGTFR-- 90 (261)
T ss_pred CCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHH---------HCCCCCEEEEEECCCCCC--
T ss_conf 735778987899873798667729999899888789999999999407096---------569997289993688869--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH---HHHHHCCCCCCCEEEECCHHH
Q ss_conf 87899998741011000121376889989999999862780782589988999999---886402244474677671353
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLAT---RARRLKRQRGLDLLIVDYIQL 354 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~---~~r~~~~~~gi~~vvIDYLql 354 (504)
T Consensus 91 ~eRl~qia~~~--------~~~~~~---------~L~--~I~v~r~~--~~~~~~~~l~~~~~~~~~~~v~LvVvDSiaa 149 (261)
T pfam08423 91 PERIVAIAERF--------GLDPEE---------VLD--NIAYARAY--NTEHQMQLLLQAAAMMSESRFALLIVDSATA 149 (261)
T ss_pred HHHHHHHHHHH--------CCCHHH---------HHH--HCEECCCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCE
T ss_conf 89999999982--------999789---------875--33141689--9899999999999987317834999832400
Q ss_pred -CCCCC--C-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf -25664--4-3211378899999999999988279199977138220168-----9999840101432422331387889
Q gi|254780332|r 355 -MTTSK--K-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR-----DNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 355 -i~~~~--~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r-----~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
T Consensus 150 lfR~e~~g~~~l~~R~~~L~~~l~~L~~lA~~~~~aVvvTNQV~~~~~~~~~f~~~~~~Pag-----G~~~~h~~~~Rl~ 224 (261)
T pfam08423 150 LYRTDFSGRGELAERQQHLAKFLRSLQRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG-----GHIMAHASTTRLY 224 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCCCCCCCC-----HHHHHHHCEEEEE
T ss_conf 23330036752899999999999999999998095899960479852886301378775750-----5777734208999
Q ss_pred EECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 72556616442333322211100000011233883899997408997259999
Q gi|254780332|r 426 VIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTL 478 (504)
Q Consensus 426 l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~ 478 (504)
T Consensus 225 L~k~~-------g--------------------~~R~~~l~ksp~~pe~~~~F 250 (261)
T pfam08423 225 LRKGR-------G--------------------EQRVCKIYDSPCLPESEAVF 250 (261)
T ss_pred EEECC-------C--------------------CEEEEEEEECCCCCCCEEEE
T ss_conf 99669-------9--------------------84799998789999864899