RPSBLAST alignment for GI: 254780332 and conserved domain: TIGR03600
>gnl|CDD|132639 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. Length = 421
Score = 360 bits (926), Expect = e-100
Identities = 174/459 (37%), Positives = 262/459 (57%), Gaps = 42/459 (9%)
Query: 26 NIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKT 85
+IEAEQA+LG +L++N+ RV LKP HF+ H+ IFE M + + +P+T+
Sbjct: 1 SIEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLDMFAENRPVDPLTLAD 60
Query: 86 FLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEA 145
L + ++ YLA +++ S N Y RI+ A R LI + +++ A +
Sbjct: 61 KLEAEGEAEKVGGLAYLAEISNNTPSAANISSYARIVREKAKERKLIAACQRIIDLAC-S 119
Query: 146 SLDKSPSIQIEEAERKLFHLAENGRYDG---GFHTFSDAMTVAIDMAGQAFNRDGRLAGV 202
++ ++EEA+ L L G DG GF TF + + + + FN G L G+
Sbjct: 120 DGGQTAEQKVEEAQAALLAL--TGMSDGQERGFVTFGEVLEDVVRDLDKRFNPKGELTGL 177
Query: 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTING 262
STG+ LD+ GL + DLI+I RP MGKT+LA NIA NVA G
Sbjct: 178 STGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--------------EG 223
Query: 263 GIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQ 322
V F+SLEMS+EQL R+++ ++ + + IR G D+ +++ + + LYID
Sbjct: 224 KPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDD 283
Query: 323 TGGISMSQLATRARRLKRQ-RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAK 381
TGG++++Q+ + ARR+KR+ GLDL++VDYIQLM ++ +R E+ GI+ LKALAK
Sbjct: 284 TGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRG--RDRNEELGGISRGLKALAK 341
Query: 382 ELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNK 441
EL++P++ L+QL+R E R +KRP +SDLR+SG+IEQDADV+ + R+ YY + P
Sbjct: 342 ELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPA-- 399
Query: 442 DDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480
G+A++I+AK RHGPTGTV L F
Sbjct: 400 -----------------GVAELILAKNRHGPTGTVELLF 421