RPSBLAST alignment for GI: 254780332 and conserved domain: TIGR00665

>gnl|CDD|161985 TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. Length = 434
 Score =  602 bits (1555), Expect = e-173
 Identities = 220/469 (46%), Positives = 297/469 (63%), Gaps = 37/469 (7%)

Query: 24  PNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTV 83
           P+NIEAEQA+LGAIL++NEA   V++ LKP  F+   HQ IF+ +  L   G+  + VTV
Sbjct: 3   PHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHQLIFQAILDLYEKGEPIDLVTV 62

Query: 84  KTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAY 143
           K  L     L E+    YLA LA    S  N E Y  I+   A+ R LI  G E+V  AY
Sbjct: 63  KEELEKDGKLEEVGGLAYLAELADNVPSAANIEYYAEIVKEKAILRRLIEAGTEIVELAY 122

Query: 144 EASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVS 203
           +   D      ++EAE+K+F +AE+ R  GGF +  + +   ++   + + R G + GV 
Sbjct: 123 DPEGD--VEELLDEAEQKIFEIAES-RTSGGFKSIKEILKDTVEEIEELYERGGGITGVP 179

Query: 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGG 263
           TG   LDK   GLQ SDLII+A RP MGKT+ A NIA N A                 G 
Sbjct: 180 TGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA--------------IKEGK 225

Query: 264 IVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT 323
            V F+SLEMS+EQLA R++S ++ V S K+R G+L+  D+EK+ + +  + + PLYID T
Sbjct: 226 PVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDT 285

Query: 324 GGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKEL 383
            G+++++L  +ARRLKR+ GL L+++DY+QLM+ S +  ENR  E++ I+ +LKALAKEL
Sbjct: 286 PGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR-SENRQQEVSEISRSLKALAKEL 344

Query: 384 NIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDD 443
           N+P+IALSQLSR VE R++KRPQLSDLRESGSIEQDAD+V+F+ RDEYY  N +  +   
Sbjct: 345 NVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYY--NPDSED--- 399

Query: 444 ILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSD 492
                         KGIA+IIIAKQR+GPTGTV LAFQ E+TRF  L+ 
Sbjct: 400 --------------KGIAEIIIAKQRNGPTGTVKLAFQGEYTRFENLAR 434