HHsearch alignment for GI: 254780333 and conserved domain: COG0019
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism].
Probab=99.57 E-value=2.1e-11 Score=93.59 Aligned_cols=318 Identities=15% Similarity=0.100 Sum_probs=203.1
Q ss_pred EEEEEEHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC-CEEEE
Q ss_conf 09998688999999999862899--7599999328665798999999998799899985599999999838985-26730
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-RIFVL 83 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~~~--~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~-~Ilvl 83 (370)
T Consensus 28 P~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~----~~~il~~l~~~g-~g~Dv~S~gEl~~al~aG~~~~~I~f~ 102 (394)
T COG0019 28 PVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANS----NPAILRLLAEEG-SGFDVASLGELELALAAGFPPERIVFS 102 (394)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHHC-CCCEECCHHHHHHHHHCCCCHHEEEEC
T ss_conf 889984799999999999861567815999974689----879999999738-886534899999999839992209991
Q ss_pred CCC-CHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCEEEECCC--------------CCCCCCCHHHHHHHHH
Q ss_conf 689-74698888754210-1348998999988887608877616761266--------------6765569889999998
Q gi|254780333|r 84 YGI-HPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCGVSHPYALQVDTG--------------FNRLGLSLQEALDFTH 147 (370)
Q Consensus 84 ~~~-~~~~~~~~~~~~i~-~~i~s~~~l~~l~~~~~~~~~~~vhlkiDTG--------------M~R~G~~~~e~~~~~~ 147 (370)
T Consensus 103 g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~-~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~ 181 (394)
T COG0019 103 GPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGL-VARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLE 181 (394)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 89999999999998699389979999999999864566-74499998899877758666778630236989889899999
Q ss_pred HHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCHHHCCCCHHC--CCCC--CCCHHHCCC---C
Q ss_conf 8886310001243201243333466788999999999975434---8860111641100--4773--222020487---3
Q gi|254780333|r 148 NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK---GIEASLASSSGIL--LGPN--YHFQLTRPG---I 217 (370)
Q Consensus 148 ~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~---~~~~h~~nS~~~l--~~p~--~~~d~vR~G---i 217 (370)
T Consensus 182 ~~~~~~~l~~~Glh~HiGSq~~d~~~~-~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~l~ 260 (394)
T COG0019 182 RAAKLLGLELVGLHFHIGSQITDLDPF-EEALAKVEELFGRLAEELGIQLEWLNLGGGLGITYEDEYDPPDLAAYAKALK 260 (394)
T ss_pred HHHHCCCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 986467882489998517878880899-9999999999999887508874089966985768788788401999999999
Q ss_pred CCCCCC---CC----CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCC
Q ss_conf 530678---77----67556764100123688632671489834665653467764179712330026010236854334
Q gi|254780333|r 218 SLYGGT---DK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 (370)
Q Consensus 218 ~lYG~~---~~----~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~ 290 (370)
T Consensus 261 ~~~~~~~~~~~l~~EPGR~i-v~~aG~Lvt~V~~~k~~~~---------------~~~v~vD~gm~~~~rpaly~a~--~ 322 (394)
T COG0019 261 EAFGEYAEDVELILEPGRAI-VANAGVLVTEVLDVKENGE---------------RNFVIVDGGMNDLMRPALYGAY--H 322 (394)
T ss_pred HHHHHCCCCCEEEECCCHHH-HHCCEEEEEEEEEEEEECC---------------CEEEEECCHHHCCCCHHHCCCC--C
T ss_conf 99851567865998377577-5154369999999997077---------------2699980344238677775874--4
Q ss_pred CCCC-CCCCEEEECCEEEEEEEECC--CCCEEEECCCCCC-CCCCCEEEEECCC-CCHHHHHHHHCCC
Q ss_conf 4432-32886999999950770042--5647996688778-7888789997888-8998999981794
Q gi|254780333|r 291 SPSV-FLGGKGFIKGYMVPILGKIT--MDMTMFDITDSLS-IEVGDYIQIFGPD-IKLDDVALASGTT 353 (370)
Q Consensus 291 ~~~~-~~~~~vli~G~~~pivGrv~--MD~~~vdvt~~~~-~~~GD~V~l~G~~-i~~~~~A~~~gti 353 (370)
T Consensus 323 ~~~~~~~~~~--~~~~~~~v~G~~CesgD~~~~d~~-lp~~~~~GD~l~i~~aGAY~~s-m~s~yN~~ 386 (394)
T COG0019 323 HIRLNRTDED--AEREEYDVVGPTCESGDVLARDRA-LPEPLKVGDLLVILDAGAYGAS-MSSNYNGR 386 (394)
T ss_pred CCCCCCCCCC--CCEEEEEEECCCCCCCCEEEEEEE-CCCCCCCCCEEEEECCCHHHHH-HHCCCCCC
T ss_conf 3312456678--873799998787688877712123-7876898999999046326776-60435698