HHsearch alignment for GI: 254780333 and conserved domain: COG0787
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=789.57 Aligned_cols=356 Identities=42% Similarity=0.651 Sum_probs=335.3
Q ss_pred CCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC-CCEEE
Q ss_conf 88509998688999999999862899759999932866579899999999879989998559999999983898-52673
Q gi|254780333|r 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ-ARIFV 82 (370)
Q Consensus 4 ~~~~~leIdl~al~~Ni~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~-~~Ilv 82 (370)
T Consensus 2 ~~~~~~~Idl~Al~~N~~~i~~~~~~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~Ilv 81 (360)
T COG0787 2 MRPATAEIDLGALRHNLRALRELAGPAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPILV 81 (360)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEEE
T ss_conf 97779998689999999999974788579999965436778999999999859998998629999999971888997899
Q ss_pred ECCCCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 068974698-8887542101348998999988887608877616761266676556988999999888863100012432
Q gi|254780333|r 83 LYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII 161 (370)
Q Consensus 83 l~~~~~~~~-~~~~~~~i~~~i~s~~~l~~l~~~~~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~ 161 (370)
T Consensus 82 L~g~~~~~~~~~~~~~~l~~~v~s~~ql~~l~~~~~~~~~l~vhLkiDTGM~RlG~~~~~~~~~~~~~~~~~~~~~~gi~ 161 (360)
T COG0787 82 LEGFFPAEELELAAAYNLTPVVNSLEQLEALKNAALKNKPLKVHLKIDTGMNRLGLRPEEAVALAIDLIALKNLDLEGIF 161 (360)
T ss_pred ECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 73758835678999869738889999999999755106962799997789875798848999999987632487559997
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 01243333466788999999999975434886011164110047732220204873530678776755676410012368
Q gi|254780333|r 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 (370)
Q Consensus 162 THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~~~~~~l~pv~~l~s~ 241 (370)
T Consensus 162 SHfa~ADe~~~~~~~~Q~~~F~~~~~~~~~~~~h~aNSa~~~~~~~~~~d~vRpGi~lYG~~P~~~~~~~lkpvmtl~a~ 241 (360)
T COG0787 162 SHFACADEPEDPYTLKQLERFNLAKQGLPGELSHLANSAGLLLGPDYHFDMVRPGIALYGLSPSGGLDNGLKPVMTLKAR 241 (360)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCCCCCEEECCEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 15677888898278999999999864698753788555877068642251464001322688565667785310799998
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCEEEE
Q ss_conf 86326714898346656534677641797123300260102368543344432328869999999507700425647996
Q gi|254780333|r 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 (370)
Q Consensus 242 i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~~~vd 321 (370)
T Consensus 242 ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~pR~~~~-----------~~~Vli~G~r~pivGrVsMD~~~Vd 310 (360)
T COG0787 242 IIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGYPRALSN-----------GTPVLINGKRVPIVGRVSMDMIMVD 310 (360)
T ss_pred EEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCC-----------CCEEEECCEEEEEEEEEECEEEEEE
T ss_conf 88999857999524770798258826899863345774201689-----------9779999998157638842069998
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 6887787888789997888899899998179460421548887364459
Q gi|254780333|r 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 (370)
Q Consensus 322 vt~~~~~~~GD~V~l~G~~i~~~~~A~~~gti~yEil~~i~~RvpRiY~ 370 (370)
T Consensus 311 l~~~~~~~~Gd~V~L~G~~i~~de~A~~~gti~YEll~~l~~Rv~R~Yv 359 (360)
T COG0787 311 LTDLPQVKVGDEVELFGEEITVDEVAEAAGTINYELLTLLGSRVPRVYV 359 (360)
T ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCEEEEC
T ss_conf 8998778999999998999999999988498367674166787337943