HHsearch alignment for GI: 254780333 and conserved domain: COG3457
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism].
Probab=99.93 E-value=7.3e-24 Score=174.10 Aligned_cols=311 Identities=22% Similarity=0.194 Sum_probs=236.1
Q ss_pred CCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEE
Q ss_conf 85099986889999999998628--9975999993286657989999999987998999855999999998389852673
Q gi|254780333|r 5 EFLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 (370)
Q Consensus 5 ~~~~leIdl~al~~Ni~~i~~~~--~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilv 82 (370)
T Consensus 2 ~~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~---g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~L 78 (353)
T COG3457 2 RNPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFG---GDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHL 78 (353)
T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECC---CCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEE
T ss_conf 78717876899887689999999873977999875205---881899999965854343022788999997599967547
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCH---HHHHHHHHHHHHHHCCCHH
Q ss_conf 0689746988887542101348998999988887-60887761676126667655698---8999999888863100012
Q gi|254780333|r 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLS 158 (370)
Q Consensus 83 l~~~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~~---~e~~~~~~~~~~~~~~~i~ 158 (370)
T Consensus 79 lr~P~~sei~~vv~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~DlreG~~~~~~~~l~~~V~eI~~lkGi~~v 158 (353)
T COG3457 79 LRSPCMSEIEDVVRKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDLREGQWGFLIEDLEETVEEIQQLKGIHLV 158 (353)
T ss_pred EECCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 62652889999987357689725899999999999827521699999835666740244788889999999669983598
Q ss_pred HHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCH---HHCCCCHHCCCC---CCCCHHHCCCCCCCCC-CCCCCC-C
Q ss_conf 43201243333-4667889999999999754348860---111641100477---3222020487353067-877675-5
Q gi|254780333|r 159 LIISHLACADD-PSSHVNSVQLERFRTLISHYKGIEA---SLASSSGILLGP---NYHFQLTRPGISLYGG-TDKINK-S 229 (370)
Q Consensus 159 gi~THfa~ad~-~~~~~~~~Q~~~F~~~~~~~~~~~~---h~~nS~~~l~~p---~~~~d~vR~Gi~lYG~-~~~~~~-~ 229 (370)
T Consensus 159 GlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagnats~~~L~~~~~~~inhlriG~al~~g~~~~n~~~~ 238 (353)
T COG3457 159 GLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQLKQVSAGNATSLTLLPMGSLPGINHLRIGEALTGGVTPTNQYID 238 (353)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCHHCCC
T ss_conf 63116654567678840489999999998773295058812798620332014552255554445214536102011023
Q ss_pred CCCCCEEEEEEEEEEEEE---ECCCCCCCCCCCCCCCC--CCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 676410012368863267---14898346656534677--6417971233002601023685433444323288699999
Q gi|254780333|r 230 HPMQTVVTAEARIILIRK---ALAGELVSYGGQKKLTR--DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 (370)
Q Consensus 230 ~~l~pv~~l~s~i~~ir~---l~~G~~VgYg~~~~~~~--~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G 304 (370)
T Consensus 239 ~~e~da~~lesEIie~k~k~s~~ige~--f~~~~~f~d~g~~~rAi~aig~~dv~~~~~spiD~---------------- 300 (353)
T COG3457 239 WLEQDAMLLESEIIEVKDKPSYPIGEG--FYRRSGFVDAGIRLRAIAAIGEQDVDVVNLSPIDY---------------- 300 (353)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEECCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH----------------
T ss_conf 003522101124552157886120542--13566654420347887776552477678862766----------------
Q ss_pred EEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEC
Q ss_conf 9950770042564799668877878887899978
Q gi|254780333|r 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 (370)
Q Consensus 305 ~~~pivGrv~MD~~~vdvt~~~~~~~GD~V~l~G 338 (370)
T Consensus 301 -~i~ilga-sSDhvvld~~~q~~v~vgDvv~fr~ 332 (353)
T COG3457 301 -GIDILGA-SSDHVVLDFRDQIFVTVGDVVRFRL 332 (353)
T ss_pred -HHHHHCC-CCCCEEEEECCCCCCEEEEEEEEEE
T ss_conf -5445324-6771899960564322402899984