HHsearch alignment for GI: 254780333 and conserved domain: cd00430
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=0 Score=796.49 Aligned_cols=352 Identities=36% Similarity=0.538 Sum_probs=335.2
Q ss_pred EEEEEEHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 099986889999999998628-9975999993286657989999999987998999855999999998389852673068
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~ 85 (370)
T Consensus 2 ~~~eIdl~al~~N~~~lr~~~~~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Ilvl~~ 81 (367)
T cd00430 2 TWAEIDLDALRHNLRVIRRLLGPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG 81 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC
T ss_conf 29998199999999999985689986999996554657789999999987979999854999999997299998599668
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 9746988887542101348998999988887-608877616761266676556988999999888863100012432012
Q gi|254780333|r 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL 164 (370)
Q Consensus 86 ~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~THf 164 (370)
T Consensus 82 ~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~~~vhlkiDTGM~RlG~~~~e~~~~~~~l~~~~~l~~~gi~SHl 161 (367)
T cd00430 82 TPPEEAEEAIEYDLTPTVSSLEQAEALSAAAARLGKTLKVHLKIDTGMGRLGFRPEEAEELLEALKALPGLELEGVFTHF 161 (367)
T ss_pred CCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 99799999996180768786999999999988759982399998068875788979999999999868996188997402
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC-----CCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCC--CCCCCCCEEE
Q ss_conf 43333466788999999999975434-----8860111641100477322202048735306787767--5567641001
Q gi|254780333|r 165 ACADDPSSHVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVT 237 (370)
Q Consensus 165 a~ad~~~~~~~~~Q~~~F~~~~~~~~-----~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~~--~~~~l~pv~~ 237 (370)
T Consensus 162 a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~l~~~~~~~d~vRpGi~LYG~~p~~~~~~~~~Lkpv~~ 241 (367)
T cd00430 162 ATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPEAHFDMVRPGIALYGLYPSPEVKSPLGLKPVMS 241 (367)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 35788770788999999999999998648997637601689777395003880601654426888734455668621079
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCC
Q ss_conf 23688632671489834665653467764179712330026010236854334443232886999999950770042564
Q gi|254780333|r 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 (370)
Q Consensus 238 l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~ 317 (370)
T Consensus 242 l~a~ii~ir~v~~G~~VGYg~~~~a~~~~~ia~v~iGYaDG~pr~~~~-----------~~~v~i~g~~~~ivGrvsMD~ 310 (367)
T cd00430 242 LKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPRALSN-----------KGEVLIRGKRAPIVGRVCMDQ 310 (367)
T ss_pred EEEEEEEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCC-----------CCEEEECCEEEEEEEEEECCE
T ss_conf 999999989718979234899403587834899711122564510268-----------868999999925633750554
Q ss_pred EEEECCCCCCCCCCCEEEEECCC----CCHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 79966887787888789997888----89989999817946042154888736445
Q gi|254780333|r 318 TMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 (370)
Q Consensus 318 ~~vdvt~~~~~~~GD~V~l~G~~----i~~~~~A~~~gti~yEil~~i~~RvpRiY 369 (370)
T Consensus 311 ~~vdvt~~~~~~~Gd~V~l~G~~~~~~~~~~~~A~~~~ti~yEilt~l~~R~~R~y 366 (367)
T cd00430 311 TMVDVTDIPDVKVGDEVVLFGRQGDEEITAEELAELAGTINYEILCRISKRVPRIY 366 (367)
T ss_pred EEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCEE
T ss_conf 89988899889999999998189988779999999878972346327788888076