HHsearch alignment for GI: 254780333 and conserved domain: cd06808
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=100.00 E-value=3.2e-32 Score=228.13 Aligned_cols=196 Identities=23% Similarity=0.269 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC-CEEEECCC-CHHHHH
Q ss_conf 9999999986289-97599999328665798999999998799899985599999999838985-26730689-746988
Q gi|254780333|r 16 LKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-RIFVLYGI-HPGQEK 92 (370)
Q Consensus 16 l~~Ni~~i~~~~~-~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~-~Ilvl~~~-~~~~~~ 92 (370)
T Consensus 1 ir~N~~~lk~~l~~~~~i~~avKAn~~~~----v~~~l~~~g-~g~~vas~~E~~~~~~~G~~~~~Il~~g~~~~~~~~~ 75 (211)
T cd06808 1 IRHNYRRLREAAPAGITLFAVVKANANPE----VARTLAALG-TGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELE 75 (211)
T ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCCHH----HHHHHHHHC-CCEEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHH
T ss_conf 97999999986899988999983088299----999999738-9078960999999997599755610156647668999
Q ss_pred HHHHHHHH-CCCCCHHHHHHHHHHH-HCCCCCCCEEEECCC--CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 88754210-1348998999988887-608877616761266--6765569889999998888631000124320124333
Q gi|254780333|r 93 IIFDTNLI-PVISSVPQLTFYSKLM-SCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168 (370)
Q Consensus 93 ~~~~~~i~-~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTG--M~R~G~~~~e~~~~~~~~~~~~~~~i~gi~THfa~ad 168 (370)
T Consensus 76 ~a~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~v~lrintg~~~~rfG~~~~e~~~~~~~~~~~~~l~l~Gi~~H~gs~~ 155 (211)
T cd06808 76 DAAEQGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGDENGKFGVRPEELKALLERAKELPHLRLVGLHTHFGSAD 155 (211)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 99996122401067788877899888538885147767227776777889999999999999689866611466543443
Q ss_pred CCCCHHHHHHHHHHHHHHHHHC--CC---CHHHCCCCHHCCC---CCCCCHHHCCCC
Q ss_conf 3466788999999999975434--88---6011164110047---732220204873
Q gi|254780333|r 169 DPSSHVNSVQLERFRTLISHYK--GI---EASLASSSGILLG---PNYHFQLTRPGI 217 (370)
Q Consensus 169 ~~~~~~~~~Q~~~F~~~~~~~~--~~---~~h~~nS~~~l~~---p~~~~d~vR~Gi 217 (370)
T Consensus 156 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~iGgg~gv~y~~e~p~~~~~~vrpG~ 211 (211)
T cd06808 156 E-DYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQELPLGTFIIVEPGR 211 (211)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHEEEECCCC
T ss_conf 8-9899999999999999999975969798996998243789889826704634799