HHsearch alignment for GI: 254780333 and conserved domain: cd06822
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=99.22 E-value=1.2e-09 Score=82.09 Aligned_cols=204 Identities=17% Similarity=0.153 Sum_probs=131.4
Q ss_pred EHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC-CCCEEEECCCCH
Q ss_conf 68899999999986289--975999993286657989999999987998999855999999998389-852673068974
Q gi|254780333|r 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP-QARIFVLYGIHP 88 (370)
Q Consensus 12 dl~al~~Ni~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~-~~~Ilvl~~~~~ 88 (370)
T Consensus 4 Nl~~I~~~I~~a~~~~~~~~v~LiAVsK~----~~~e~I~-~a~~~G~~~fGENrvQE~~~K~~~l~~~i~WHfIG~LQs 78 (227)
T cd06822 4 NLKRIRQAVKRASKKLPASKPRLVAVSKT----KPAELIK-EAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGHLQS 78 (227)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECC----CCHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 89999999999997679999689999799----8999999-999869960288609999999984532545999645324
Q ss_pred HHHHHHHHH---HHHCCCCCHHHHHHHHHHH-HCC--CCCCCEEEECCC--CCCCCCCHHHHHHHHHHHH-HHHCCCHHH
Q ss_conf 698888754---2101348998999988887-608--877616761266--6765569889999998888-631000124
Q gi|254780333|r 89 GQEKIIFDT---NLIPVISSVPQLTFYSKLM-SCG--VSHPYALQVDTG--FNRLGLSLQEALDFTHNSF-NKKLGQLSL 159 (370)
Q Consensus 89 ~~~~~~~~~---~i~~~i~s~~~l~~l~~~~-~~~--~~~~vhlkiDTG--M~R~G~~~~e~~~~~~~~~-~~~~~~i~g 159 (370)
T Consensus 79 NKvk~i~~~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~~E~~K~G~~~~e~~~~~~~i~~~~~~l~i~G 158 (227)
T cd06822 79 NKVKKLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSG 158 (227)
T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 34899970677446641574999999999999736888706999970278645689899999999999998689976889
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHH----HHHHHHC-CC---CHHHCCCCHHCCCCCCCCHHHCCCCCCCC
Q ss_conf 320124333346678899999999----9975434-88---60111641100477322202048735306
Q gi|254780333|r 160 IISHLACADDPSSHVNSVQLERFR----TLISHYK-GI---EASLASSSGILLGPNYHFQLTRPGISLYG 221 (370)
Q Consensus 160 i~THfa~ad~~~~~~~~~Q~~~F~----~~~~~~~-~~---~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG 221 (370)
T Consensus 159 LMti~p~~~~~~~~-~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMGMS~Dye~AIe~GsT~VRIGs~IFG 227 (227)
T cd06822 159 LMTIGSFGYSLSSG-PNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred EEEECCCCCCHHHC-HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEECCCHHCC
T ss_conf 99869899880022-1399999999999999974999997988685365799999879997983713109