>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.

Probab=99.39 E-value=3.7e-11 Score=91.98 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=134.3 Q ss_pred EHHHHHHHHHHHHHHC----CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHC---CCCCEEEEC Q ss_conf 6889999999998628----997599999328665798999999998799899985599999999838---985267306 Q gi|254780333|r 12 DLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT---PQARIFVLY 84 (370) Q Consensus 12 dl~al~~Ni~~i~~~~----~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g---~~~~Ilvl~ 84 (370) T Consensus 5 nl~~i~~~I~~a~~~~gR~~~~V~LiaVSK~----~~~e~I~~-a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 79 (224) T cd06824 5 NLAQVKQRIAQAAKQAGRDPSSVQLLAVSKT----KPADAIRE-AYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIG 79 (224) T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 9999999999999983879576599998899----89999999-998699524787099999999985337895599977 Q ss_pred CCCHHHHHHHHHH-HHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCC--CCCCCCCHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 8974698888754-2101348998999988887-608877616761266--67655698899999988886310001243 Q gi|254780333|r 85 GIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTG--FNRLGLSLQEALDFTHNSFNKKLGQLSLI 160 (370) Q Consensus 85 ~~~~~~~~~~~~~-~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTG--M~R~G~~~~e~~~~~~~~~~~~~~~i~gi 160 (370) T Consensus 80 ~LQsNKvk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~s~E~~K~G~~~~e~~~~~~~i~~~~~l~i~GL 159 (224) T cd06824 80 PIQSNKTKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGEDSKSGVAPEDAAELAEAISQLPNLRLRGL 159 (224) T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 55201679999852189764509999999999997299862899985378500269899999999999995699842667 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCC-HHHCCCCHHCCCCCCCCHHHCCCCCCCC Q ss_conf 201243333466788999999999975434----886-0111641100477322202048735306 Q gi|254780333|r 161 ISHLACADDPSSHVNSVQLERFRTLISHYK----GIE-ASLASSSGILLGPNYHFQLTRPGISLYG 221 (370) Q Consensus 161 ~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~----~~~-~h~~nS~~~l~~p~~~~d~vR~Gi~lYG 221 (370) T Consensus 160 Mti~p~~~d~~~--~r~~F~~l~~l~~~l~~~~~~~~~LSMGMS~Dye~AI~~GsT~VRIGsaIFG 223 (224) T cd06824 160 MAIPAPTDDEAA--QRAAFKRLRQLFDQLKKQYPDLDTLSMGMSGDLEAAIAAGSTMVRIGTAIFG 223 (224) T ss_pred EEECCCCCCHHH--HHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHCCCCEEEECCHHHC T ss_conf 765799988578--9999999999999998517998957770545499999879997981836419

HHsearch alignment for GI: 254780333 and conserved domain: cd06824