HHsearch alignment for GI: 254780333 and conserved domain: cd06827

>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00  E-value=0  Score=808.08  Aligned_cols=349  Identities=34%  Similarity=0.498  Sum_probs=329.8

Q ss_pred             CEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             50999868899999999986289975999993286657989999999987998999855999999998389852673068
Q gi|254780333|r    6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG   85 (370)
Q Consensus         6 ~~~leIdl~al~~Ni~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~   85 (370)
T Consensus         1 P~~~eIdl~al~~N~~~ir~~~~~~~i~aVVKAnAYGhG~~~va~~l~--~~~~faVa~~~Ea~~LR~~g~~~~IlvL~g   78 (354)
T cd06827           1 PARATIDLAALRHNLRLVRELAPNSKILAVVKANAYGHGLVRVAKALA--DADGFAVACIEEALALREAGITKPILLLEG   78 (354)
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH--CCCEEEEEEHHHHHHHHHCCCCCCEEEEEC
T ss_conf             989999799999999999976899839999984636486999999985--699799948999999997399986699937


Q ss_pred             -CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf             -9746988887542101348998999988887608877616761266676556988999999888863100012432012
Q gi|254780333|r   86 -IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL  164 (370)
Q Consensus        86 -~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~THf  164 (370)
T Consensus        79 ~~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~-~~~~~~~vhlkiDTGM~RlG~~~~e~~~~~~~l~~~~~l~~~gi~SHf  157 (354)
T cd06827          79 FFSADELPLAAEYNLWTVVHSEEQLEWLEQA-ALSKPLNVWLKLDSGMHRLGFSPEEYAAAYQRLKASPNVASIVLMTHF  157 (354)
T ss_pred             CCCHHHHHHHHHCCCEEEECCHHHHHHHHHH-CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             8998999999984998999989999999862-848995499997578885789989999999999858998568998402


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCC---CCCCCCCCEEEEEEE
Q ss_conf             43333466788999999999975434886011164110047732220204873530678776---755676410012368
Q gi|254780333|r  165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR  241 (370)
Q Consensus       165 a~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~---~~~~~l~pv~~l~s~  241 (370)
T Consensus       158 a~AD~~~~~~t~~Q~~~F~~~~~~~~-~~~h~aNSa~~l~~~~~~~d~VR~Gi~lYG~~P~~~~~~~~~~Lkpv~sl~a~  236 (354)
T cd06827         158 ACADEPDSPGTAKQLAIFEQATAGLP-GPRSLANSAAILAWPEAHGDWVRPGIMLYGASPFADKSGADLGLKPVMTLSSE  236 (354)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCHHHHCCCCCCCCEECCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             45788887899999999999971488-66667178877459522477234674615688776666545585465899998


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCEEEE
Q ss_conf             86326714898346656534677641797123300260102368543344432328869999999507700425647996
Q gi|254780333|r  242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD  321 (370)
Q Consensus       242 i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~~~vd  321 (370)
T Consensus       237 v~~vk~v~~G~~VgYg~t~~a~~~~~iA~vpiGYaDG~~R~~s~-----------~~~V~i~G~~~pivGrI~MD~~~vD  305 (354)
T cd06827         237 IIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPRHAPS-----------GTPVLVNGQRTPLVGRVSMDMLTVD  305 (354)
T ss_pred             EEEEEECCCCCCEECCCCEECCCCCEEEEEEEECCCCCCCCCCC-----------CCEEEECCEEEEEECEEECCEEEEE
T ss_conf             45789769999231697411366735999830411463531579-----------9789999999776567505358998


Q ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             688778788878999788889989999817946042154888736445
Q gi|254780333|r  322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY  369 (370)
Q Consensus       322 vt~~~~~~~GD~V~l~G~~i~~~~~A~~~gti~yEil~~i~~RvpRiY  369 (370)
T Consensus       306 vt~~~~~~~GD~V~l~G~~i~~~~~A~~~~TI~yEilt~l~~Rv~RvY  353 (354)
T cd06827         306 LTDLPEAKVGDPVELWGKGLPVDEVAAAAGTIGYELLCRLTPRVPRVY  353 (354)
T ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCEE
T ss_conf             889977899999999689999999999878964246327788888176