HHsearch alignment for GI: 254780333 and conserved domain: cd06836
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=99.53 E-value=8.8e-11 Score=89.54 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=168.2
Q ss_pred EEEEEEHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 0999868899999999986-289975999993286657989999999987998999855999999998389852673068
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~-~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~ 85 (370)
T Consensus 4 ~~~vyD~~~i~~~~~~~~~afp~~~~~~YAvKaN----~~p~il~~l~~~G~-g~DvaS~~El~~al~~G~~~~~Ii~~g 78 (379)
T cd06836 4 AVGLYDLDGFRALVARLTAAFPAPVLHTFAVKAN----PLVPVLRLLAEAGA-GAEVASPGELELALAAGFPPERIVFDS 78 (379)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCHHHEEECC
T ss_conf 5899629999999999998589986189998338----99999999998499-789739999999998599989989889
Q ss_pred C--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC--CCCCCCEEEECC------------C--CCCCCCCHHHHH-HHH
Q ss_conf 9--74698888754210134899899998888760--887761676126------------6--676556988999-999
Q gi|254780333|r 86 I--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQVDT------------G--FNRLGLSLQEAL-DFT 146 (370)
Q Consensus 86 ~--~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~--~~~~~vhlkiDT------------G--M~R~G~~~~e~~-~~~ 146 (370)
T Consensus 79 p~K~~~~l~~A~~~Gv~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~ 158 (379)
T cd06836 79 PAKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEI 158 (379)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98999999999973992034898999999999986299752589997168776675434468998985888147789999
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCHHHCCCCHHCC--C-C-CCC------CHH
Q ss_conf 88886310001243201243333466788999999999975434----88601116411004--7-7-322------202
Q gi|254780333|r 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK----GIEASLASSSGILL--G-P-NYH------FQL 212 (370)
Q Consensus 147 ~~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~----~~~~h~~nS~~~l~--~-p-~~~------~d~ 212 (370)
T Consensus 159 ~~~~-~~~~~l~GlhfHvGSq~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~ 236 (379)
T cd06836 159 IDAF-ARRPWLNGLHVHVGSQG-CELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAA 236 (379)
T ss_pred HHHH-HCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9998-26797006898778888-898999999999999999998860877632650378745467888889899999999
Q ss_pred HCCCCCCC-CCCC----CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCC---------
Q ss_conf 04873530-6787----767556764100123688632671489834665653467764179712330026---------
Q gi|254780333|r 213 TRPGISLY-GGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG--------- 278 (370)
Q Consensus 213 vR~Gi~lY-G~~~----~~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG--------- 278 (370)
T Consensus 237 i~~~l~~~f~~~~~li~EPGR~-lva~ag~ll~~V~~vK~~~-~~--------------~~~i~d~G~~~~~~~~~~~~~ 300 (379)
T cd06836 237 LKAAVPELFDGRYQLVTEFGRS-LLAKCGTIVSRVEYTKSSG-GR--------------RIAITHAGAQVATRTAYAPDD 300 (379)
T ss_pred HHHHHHHHCCCCCEEEECCCCE-EECCCEEEEEEEEEEEECC-CE--------------EEEEEECCCCCCCCCCCCCCC
T ss_conf 9999997516685688605532-3046159999999999739-86--------------899995166555310024333
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCC--CEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 01023685433444323288699999995077004256--479966887787888789997888
Q gi|254780333|r 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 279 ~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD--~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
T Consensus 301 ~~~~~~~~~~~~~~---~~~----~~~~~~v~Gp~C~~~D~l~~~~~-lP~l~~GD~l~i~~~G 356 (379)
T cd06836 301 WPLRVTVFDANGEP---KTG----PEVVTDVAGPCCFAGDVLAKERA-LPPLEPGDYVAVHDTG 356 (379)
T ss_pred CCEEEEEECCCCCC---CCC----CEEEEEEECCCCCCCCEECCCCC-CCCCCCCCEEEECCCC
T ss_conf 74467840677786---789----83499998668785879863648-8889999999987977