HHsearch alignment for GI: 254780333 and conserved domain: cd06836

>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=99.53  E-value=8.8e-11  Score=89.54  Aligned_cols=303  Identities=16%  Similarity=0.153  Sum_probs=168.2

Q ss_pred             EEEEEEHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             0999868899999999986-289975999993286657989999999987998999855999999998389852673068
Q gi|254780333|r    7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG   85 (370)
Q Consensus         7 ~~leIdl~al~~Ni~~i~~-~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~   85 (370)
T Consensus         4 ~~~vyD~~~i~~~~~~~~~afp~~~~~~YAvKaN----~~p~il~~l~~~G~-g~DvaS~~El~~al~~G~~~~~Ii~~g   78 (379)
T cd06836           4 AVGLYDLDGFRALVARLTAAFPAPVLHTFAVKAN----PLVPVLRLLAEAGA-GAEVASPGELELALAAGFPPERIVFDS   78 (379)
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCHHHEEECC
T ss_conf             5899629999999999998589986189998338----99999999998499-789739999999998599989989889


Q ss_pred             C--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC--CCCCCCEEEECC------------C--CCCCCCCHHHHH-HHH
Q ss_conf             9--74698888754210134899899998888760--887761676126------------6--676556988999-999
Q gi|254780333|r   86 I--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQVDT------------G--FNRLGLSLQEAL-DFT  146 (370)
Q Consensus        86 ~--~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~--~~~~~vhlkiDT------------G--M~R~G~~~~e~~-~~~  146 (370)
T Consensus        79 p~K~~~~l~~A~~~Gv~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~  158 (379)
T cd06836          79 PAKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEI  158 (379)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             98999999999973992034898999999999986299752589997168776675434468998985888147789999


Q ss_pred             HHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCHHHCCCCHHCC--C-C-CCC------CHH
Q ss_conf             88886310001243201243333466788999999999975434----88601116411004--7-7-322------202
Q gi|254780333|r  147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK----GIEASLASSSGILL--G-P-NYH------FQL  212 (370)
Q Consensus       147 ~~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~----~~~~h~~nS~~~l~--~-p-~~~------~d~  212 (370)
T Consensus       159 ~~~~-~~~~~l~GlhfHvGSq~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~  236 (379)
T cd06836         159 IDAF-ARRPWLNGLHVHVGSQG-CELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAA  236 (379)
T ss_pred             HHHH-HCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             9998-26797006898778888-898999999999999999998860877632650378745467888889899999999


Q ss_pred             HCCCCCCC-CCCC----CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCC---------
Q ss_conf             04873530-6787----767556764100123688632671489834665653467764179712330026---------
Q gi|254780333|r  213 TRPGISLY-GGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG---------  278 (370)
Q Consensus       213 vR~Gi~lY-G~~~----~~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG---------  278 (370)
T Consensus       237 i~~~l~~~f~~~~~li~EPGR~-lva~ag~ll~~V~~vK~~~-~~--------------~~~i~d~G~~~~~~~~~~~~~  300 (379)
T cd06836         237 LKAAVPELFDGRYQLVTEFGRS-LLAKCGTIVSRVEYTKSSG-GR--------------RIAITHAGAQVATRTAYAPDD  300 (379)
T ss_pred             HHHHHHHHCCCCCEEEECCCCE-EECCCEEEEEEEEEEEECC-CE--------------EEEEEECCCCCCCCCCCCCCC
T ss_conf             9999997516685688605532-3046159999999999739-86--------------899995166555310024333


Q ss_pred             EECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCC--CEEEECCCCCCCCCCCEEEEECCC
Q ss_conf             01023685433444323288699999995077004256--479966887787888789997888
Q gi|254780333|r  279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPD  340 (370)
Q Consensus       279 ~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD--~~~vdvt~~~~~~~GD~V~l~G~~  340 (370)
T Consensus       301 ~~~~~~~~~~~~~~---~~~----~~~~~~v~Gp~C~~~D~l~~~~~-lP~l~~GD~l~i~~~G  356 (379)
T cd06836         301 WPLRVTVFDANGEP---KTG----PEVVTDVAGPCCFAGDVLAKERA-LPPLEPGDYVAVHDTG  356 (379)
T ss_pred             CCEEEEEECCCCCC---CCC----CEEEEEEECCCCCCCCEECCCCC-CCCCCCCCEEEECCCC
T ss_conf             74467840677786---789----83499998668785879863648-8889999999987977