HHsearch alignment for GI: 254780333 and conserved domain: cd06842
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.55 E-value=4.3e-11 Score=91.54 Aligned_cols=157 Identities=15% Similarity=0.023 Sum_probs=124.8
Q ss_pred EEEEEEHHHHHHHHHHHHHHC----CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEE
Q ss_conf 099986889999999998628----9975999993286657989999999987998999855999999998389852673
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~----~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilv 82 (370)
T Consensus 11 P~yVyd~~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~----~~~il~~l~~~G~-g~Dv~S~gEl~~al~aG~~~~~Iv 85 (423)
T cd06842 11 PLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANK----SLALVRAAAAAGI-GVDVASLAELRQALAAGVRGDRIV 85 (423)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCHHHEE
T ss_conf 97997699999999999999875599826999861068----9999999998499-289869999999998599879989
Q ss_pred ECCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC--CCCCCCEEEECC----CCCCCCCCHHHHHHHHHHHHH-HH
Q ss_conf 0689--74698888754210134899899998888760--887761676126----667655698899999988886-31
Q gi|254780333|r 83 LYGI--HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQVDT----GFNRLGLSLQEALDFTHNSFN-KK 153 (370)
Q Consensus 83 l~~~--~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~--~~~~~vhlkiDT----GM~R~G~~~~e~~~~~~~~~~-~~ 153 (370)
T Consensus 86 ~~g~~Ks~~ei~~Ai~~gv~i~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~~~~~~sKFGi~~~~~~~~l~~~~~~~~ 165 (423)
T cd06842 86 ATGPAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPFPASLPSRFGMPAAEVRTALERLAQLRE 165 (423)
T ss_pred ECCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 73898998999999985998997899999999999876079962799986789999999998999999999999996399
Q ss_pred CCCHHHHHCCCCCCC
Q ss_conf 000124320124333
Q gi|254780333|r 154 LGQLSLIISHLACAD 168 (370)
Q Consensus 154 ~~~i~gi~THfa~ad 168 (370)
T Consensus 166 ~l~~~GlH~HiGs~~ 180 (423)
T cd06842 166 RVRLVGFHFHLDGYS 180 (423)
T ss_pred CCCEEEEEEECCCCC
T ss_conf 983689888648877