HHsearch results for GI: 254780333 and protein with PDBid: 1rcq_A

Probab=100.00  E-value=0  Score=762.27  Aligned_cols=351  Identities=30%  Similarity=0.437  Sum_probs=326.8

Q ss_pred             CCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEE
Q ss_conf             88509998688999999999862899759999932866579899999999879989998559999999983898526730
Q gi|254780333|r    4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL   83 (370)
Q Consensus         4 ~~~~~leIdl~al~~Ni~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl   83 (370)
                      .|.+|+|||+++|+||++.+|+.. ++++||||||||||||+.+++++| ++|+++||||+++||++||++|++.+|+++
T Consensus         1 mRp~~~eIdl~al~~N~~~lr~~~-~~ki~aVVKanAYGhG~~~ia~~L-~~g~~~faVa~~~Ea~~LR~~g~~~~il~l   78 (357)
T 1rcq_A            1 MRPARALIDLQALRHNYRLAREAT-GARALAVIKADAYGHGAVRCAEAL-AAEADGFAVACIEEGLELREAGIRQPILLL   78 (357)
T ss_dssp             CCCCEEEEEHHHHHHHHHHHHHHH-CSEEEEECHHHHHTTCHHHHHHHH-TTTCSEEEESSHHHHHHHHHTTCCSCEEET
T ss_pred             CCCEEEEEEHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCHHHHHHHH-HHCCCEEEEEEHHHHHHHHHHCCCCCEECC
T ss_conf             986799984999999999997066-994999996653538799999999-956997999899999999970996420110


Q ss_pred             CCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHC
Q ss_conf             689-7469888875421013489989999888876088776167612666765569889999998888631000124320
Q gi|254780333|r   84 YGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS  162 (370)
Q Consensus        84 ~~~-~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~T  162 (370)
                      .+. .+++.+.+.++++++++++.++++.+++. +.++++++|||+||||||+||.++|+.+++..+...+++.++|+||
T Consensus        79 ~~~~~~~~~~~~~~~~i~~~i~s~~~~~~l~~~-~~~~~~~vhLkvDTGM~RlG~~~~e~~~~~~~~~~~~~~~~~gi~t  157 (357)
T 1rcq_A           79 EGFFEASELELIVAHDFWCVVHCAWQLEAIERA-SLARPLNVWLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMS  157 (357)
T ss_dssp             TCCSSGGGHHHHHHTTEEEEECSHHHHHHHHHC-CCSSCEEEEEEBCSSSCSSSBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             013557788988863146565879999999974-6366436999972676433568378888899986414544034565


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCC---CCCCCCCEEEEE
Q ss_conf             12433334667889999999999754348860111641100477322202048735306787767---556764100123
Q gi|254780333|r  163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE  239 (370)
Q Consensus       163 Hfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~~---~~~~l~pv~~l~  239 (370)
                      ||++||+++..+++.|+++|.++.+..+ ...|++||+|++++|+.++||||||++|||++|...   ...+|||||+|+
T Consensus       158 H~a~ad~~~~~~~~~q~~~f~~~~~~~~-~~~h~aNS~~~l~~~~~~~d~vR~Gi~lYG~~p~~~~~~~~~~lkpv~~l~  236 (357)
T 1rcq_A          158 HFSRADELDCPRTEEQLAAFSAASQGLE-GEISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLE  236 (357)
T ss_dssp             CCSSTTCTTCTHHHHHHHHHHHHHTTCC-SCEECCCHHHHHHCTTSCCSEECCCGGGGTCCSSSSCCTTGGGCCCCEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             3033556203679999999999875113-321146839885484024862466720145678743445443465128998


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCEE
Q ss_conf             68863267148983466565346776417971233002601023685433444323288699999995077004256479
Q gi|254780333|r  240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM  319 (370)
Q Consensus       240 s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~~~  319 (370)
                      |+|++||++++|++||||++|++++|++|||+|+||||||||.+||           +++|+|+|++|||+|||||||+|
T Consensus       237 a~i~~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~-----------~~~v~i~G~~~pivGrisMD~~~  305 (357)
T 1rcq_A          237 SKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAAD-----------GTLVFIDGKPGRLVGRVSMDMLT  305 (357)
T ss_dssp             EEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCT-----------TCEEEETTEEEEBCSCCCSSCEE
T ss_pred             EEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCC-----------CCEEEECCEEEEEECEECCCEEE
T ss_conf             6668989858999876543200257607998612001575410468-----------82999999993785763404389


Q ss_pred             EECCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf             966887787888789997888899899998179460421548887364459
Q gi|254780333|r  320 FDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT  370 (370)
Q Consensus       320 vdvt~~~~~~~GD~V~l~G~~i~~~~~A~~~gti~yEil~~i~~RvpRiY~  370 (370)
                      ||||+.+++++||+|+|||++++++++|+++|||+||++|+|+ |+||+|+
T Consensus       306 vdvt~~~~~~~Gd~v~l~G~~~~~~~~A~~~~ti~yEilt~l~-Rv~R~Y~  355 (357)
T 1rcq_A          306 VDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNLK-RVPRVYS  355 (357)
T ss_dssp             EECTTCTTCCTTCEEEEESSSSCHHHHHHHTTCCHHHHHHTCC-SSCEEEE
T ss_pred             EECCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCHHHHEECCC-CCCEEEC
T ss_conf             9888997789999999978999999999997895124222674-5773838