HHsearch results for GI: 254780333 and protein with PDBid: 2qgh_A
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.70 E-value=1.2e-13 Score=106.76 Aligned_cols=307 Identities=13% Similarity=0.089 Sum_probs=184.9
Q ss_pred EEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 0999868899999999986289--97599999328665798999999998799899985599999999838985267306
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~ 84 (370)
|--.+|++.|++|++.+++..+ +.+++--+|||. ...+.+.+.+.|+ +|-|+|..|....+.+|++..-++++
T Consensus 34 P~yv~d~~~l~~n~~~~~~a~~~~~~~i~YAvKaN~----~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~~~~Ii~~ 108 (425)
T 2qgh_A 34 PFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANS----NLSILSLLAHLES-GADCVSIGEIQRALKAGIKPYRIVFS 108 (425)
T ss_dssp SEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCC----CHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCHHHEEEC
T ss_conf 889986999999999999857999975999971389----9999999998099-39982999999999759986784642
Q ss_pred CC--CHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH-CCCCCCCEEEECCC--------------CCCCCCCHHHHHHHH
Q ss_conf 89--746988887542101-3489989999888876-08877616761266--------------676556988999999
Q gi|254780333|r 85 GI--HPGQEKIIFDTNLIP-VISSVPQLTFYSKLMS-CGVSHPYALQVDTG--------------FNRLGLSLQEALDFT 146 (370)
Q Consensus 85 ~~--~~~~~~~~~~~~i~~-~i~s~~~l~~l~~~~~-~~~~~~vhlkiDTG--------------M~R~G~~~~e~~~~~ 146 (370)
++ .++++..+.+.++.. ++.+.++++.+.++.+ .+...++.|-++.+ -++.|+..++..+.+
T Consensus 109 gp~k~~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~~~~~~~~ 188 (425)
T 2qgh_A 109 GVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMF 188 (425)
T ss_dssp CTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 56688899998876382000021378999999999864997479999827988666765236644466650267899998
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCHHHCCCCHHCCCCCC------CCHHHCCCCC
Q ss_conf 8888631000124320124333346678899999999997543--4886011164110047732------2202048735
Q gi|254780333|r 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEASLASSSGILLGPNY------HFQLTRPGIS 218 (370)
Q Consensus 147 ~~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~--~~~~~h~~nS~~~l~~p~~------~~d~vR~Gi~ 218 (370)
......+++++.|+..|..+.......+. ..++....+.... .+......+=+|-+..+.. ..+.++....
T Consensus 189 ~~~~~~~~l~~~Glh~HvgS~~~~~~~~~-~a~~~~~~~~~~~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~~~ 267 (425)
T 2qgh_A 189 LWAKKSAFLEPVSVHFHIGSQLLDLEPII-EASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILN 267 (425)
T ss_dssp HHHHHCSSEEEEEEECCCBSSBCCHHHHH-HHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 75542043578789970686666606788-88888889999999709987767666866767777553108999999887
Q ss_pred CCCCCC-----CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCC
Q ss_conf 306787-----767556764100123688632671489834665653467764179712330026010236854334443
Q gi|254780333|r 219 LYGGTD-----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 (370)
Q Consensus 219 lYG~~~-----~~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~ 293 (370)
.+.... +++. .=...+..+-++|+.+|... +.+++++-.|+.+..+..+.+. .+...
T Consensus 268 ~~~~~~~~l~~EPGR-~lva~ag~llt~V~~~K~~~---------------~~~~~~~D~g~~~~~~~~~~~~--~~~~~ 329 (425)
T 2qgh_A 268 ALQGLDLTIICEPGR-SIVAESGELITQVLYEKKAQ---------------NKRFVIVDAGMNDFLRPSLYHA--KHAIR 329 (425)
T ss_dssp HTTTCCCEEEECCCH-HHHTTTEEEEEEEEEEEC-----------------CCCEEEESCCTTTCCHHHHHCC--CCCEE
T ss_pred HHCCCCCEEEECCHH-HHHHHCEEEEEEEEEEEECC---------------CEEEEEECCCHHCCCCHHHHCC--CCCEE
T ss_conf 650557548853006-75532258999999995039---------------9049998774210468556045--45325
Q ss_pred CCCCCEEEECCEEEEEEEECC--CCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf 232886999999950770042--5647996688778788878999788
Q gi|254780333|r 294 VFLGGKGFIKGYMVPILGKIT--MDMTMFDITDSLSIEVGDYIQIFGP 339 (370)
Q Consensus 294 ~~~~~~vli~G~~~pivGrv~--MD~~~vdvt~~~~~~~GD~V~l~G~ 339 (370)
.. ...---..+.+.|.|..| +|.+.-++. .|++++||.+++..-
T Consensus 330 ~~-~~~~~~~~~~~~i~GptC~s~D~l~~~~~-lP~l~~GD~l~f~~~ 375 (425)
T 2qgh_A 330 VI-TPSKGREISPCDVVGPVCESSDTFLKDAH-LPELEPGDKIAIEKV 375 (425)
T ss_dssp EC-SCC---CCEEEEEECSSSSTTCEEEEEEE-ECCCCTTCEEEECSC
T ss_pred EE-CCCCCCCCCEEEEECCCCCCCCEECCCCC-CCCCCCCCEEEECCC
T ss_conf 40-24678874279998978688879850661-689999999999897