HHsearch results for GI: 254780333 and protein with PDBid: 3kw3_A
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=100.00 E-value=0 Score=758.58 Aligned_cols=354 Identities=34% Similarity=0.571 Sum_probs=335.1
Q ss_pred CCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 85099986889999999998628997599999328665798999999998799899985599999999838985267306
Q gi|254780333|r 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84 (370)
Q Consensus 5 ~~~~leIdl~al~~Ni~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~ 84 (370)
+.+++||||+||+||++.||++++++++||||||||||||+.+|++++.++||++|||++++||++||+.|++.+|++|.
T Consensus 19 ~~~~a~Idl~ai~~N~~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~il~l~ 98 (376)
T 3kw3_A 19 ATAIATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIALL 98 (376)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHTTSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEET
T ss_pred CCEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHH
T ss_conf 98899982999999999999757998299999774141659999999998696999993889999999728854255630
Q ss_pred CCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHC
Q ss_conf 8974-6988887542101348998999988887-6088776167612666765569889999998888631000124320
Q gi|254780333|r 85 GIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162 (370)
Q Consensus 85 ~~~~-~~~~~~~~~~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~T 162 (370)
+..+ ++.+.+.++++++++++.++++.+++.+ +.++.+++||||||||||+||.++|+.++++++..+++++++|+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~vhlkvDTGM~RlG~~~~e~~~~i~~i~~~~~l~i~Gi~T 178 (376)
T 3kw3_A 99 NGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILS 178 (376)
T ss_dssp TCCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSSCCSSSBCHHHHHHHHHCCTHHHHSEEEEEEC
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 67977899998741234400659999999988986388714999984899847888689999988766404743778987
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 12433334667889999999999754348860111641100477322202048735306787767556764100123688
Q gi|254780333|r 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 (370)
Q Consensus 163 Hfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~~~~~~l~pv~~l~s~i 242 (370)
||++||+++..++..|+++|.+..+.++....|++||+|++++|+.++||||||++|||++|....+.+++|+|+|+|+|
T Consensus 179 Hfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSag~~~~~~~~~d~vR~Gi~lYG~~p~~~~~~~l~pv~~l~s~i 258 (376)
T 3kw3_A 179 HLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQV 258 (376)
T ss_dssp CCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTEECCSGGGGTCCTTCCSSCSCCCCEEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCCEECCEEEECCCCCCCCCCCCCCCEEEEEEE
T ss_conf 76135567828899999999999751775465554769986392321464203402525776434222356550699998
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCEEEEC
Q ss_conf 63267148983466565346776417971233002601023685433444323288699999995077004256479966
Q gi|254780333|r 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322 (370)
Q Consensus 243 ~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~~~vdv 322 (370)
+++|++++|++||||++|++++|++|||+|+||||||||.+|| +++|+|+|++|||+|||||||+|||+
T Consensus 259 ~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~vGYaDG~~R~~~~-----------~~~V~i~g~~~~ivGrisMD~~~vDv 327 (376)
T 3kw3_A 259 LQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHKLPIVGHISMDSIIVDA 327 (376)
T ss_dssp EEEEEC----------------CCEEEEESCCGGGTCCGGGTT-----------TCEEEETTEEEEBCSCCCSSCEEEEC
T ss_pred EEEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCC-----------CCEEEECCEEEEEEEEECCCEEEEEC
T ss_conf 6544544898666687233378749985045346775523478-----------85799999982796286353489987
Q ss_pred CCCC-CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 8877-8788878999788889989999817946042154888736445
Q gi|254780333|r 323 TDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 (370)
Q Consensus 323 t~~~-~~~~GD~V~l~G~~i~~~~~A~~~gti~yEil~~i~~RvpRiY 369 (370)
|+++ ++++||+|+|||++.++|++|+++|||+||++|+|++|+||+|
T Consensus 328 t~~~~~~~vGD~V~l~G~~~~~~~~a~~~~ti~yEil~~l~~Rv~R~y 375 (376)
T 3kw3_A 328 TDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRYKRIY 375 (376)
T ss_dssp TTCSSCCCTTCEEEEEBTTBCHHHHHHHHTSCHHHHHHTCCTTSEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHCCCCCCCEEE
T ss_conf 788777999999999819999999999978935467407789888286