HHsearch results for GI: 254780333 and protein with PDBid: 3n2b_A
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.58 E-value=9.6e-12 Score=94.34 Aligned_cols=307 Identities=16% Similarity=0.130 Sum_probs=189.0
Q ss_pred EEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 0999868899999999986289--97599999328665798999999998799899985599999999838985267306
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~ 84 (370)
|--..|.+.|++|++.+++..+ +.+++--+|||. ...+.+.+.+.|+ +|-|+|..|-...+++|++..-.+++
T Consensus 53 P~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~----~~~vl~~l~~~G~-G~Dv~S~~El~~al~aG~~~~~Iv~~ 127 (441)
T 3n2b_A 53 PLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANS----NLGVLNTLARLGS-GFDIVSVGELERVLAAGGDPSKVVFS 127 (441)
T ss_dssp SEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCC----CHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred CEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCCCCCEEEC
T ss_conf 889987999999999999876058998999961389----8999999998399-38986999999999739992104862
Q ss_pred CC--CHHHHHHHHHHHH-HCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCC--------------CCCCCCCHHHHHHHH
Q ss_conf 89--7469888875421-01348998999988887-608877616761266--------------676556988999999
Q gi|254780333|r 85 GI--HPGQEKIIFDTNL-IPVISSVPQLTFYSKLM-SCGVSHPYALQVDTG--------------FNRLGLSLQEALDFT 146 (370)
Q Consensus 85 ~~--~~~~~~~~~~~~i-~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTG--------------M~R~G~~~~e~~~~~ 146 (370)
++ .++++..++++++ ...+.|.++++.+.+++ +.+++.+|-|-|+.+ -++.|++.++....+
T Consensus 128 g~~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~skfGi~~~~~~~~~ 207 (441)
T 3n2b_A 128 GVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVY 207 (441)
T ss_dssp CTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 66798899999986244543443077999999888861999769999925888666634156877676676578899999
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCHHHCCCCHHCCCC---C-CCCHHHCCCCCCC
Q ss_conf 88886310001243201243333466788999999999975434--8860111641100477---3-2220204873530
Q gi|254780333|r 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGILLGP---N-YHFQLTRPGISLY 220 (370)
Q Consensus 147 ~~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~--~~~~h~~nS~~~l~~p---~-~~~d~vR~Gi~lY 220 (370)
.......++++.|+-.|..+--. +.......++...++.+.++ +.....-|=+|=+-.+ + ...+.........
T Consensus 208 ~~~~~~~~l~l~Glh~HiGSq~~-~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~ 286 (441)
T 3n2b_A 208 RLAHSLPNLDVHGIDCHIGSQLT-ALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLD 286 (441)
T ss_dssp HHHHHCTTEEEEEEECCTTCSCC-CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCEEC-----CEECHHHHHHHH
T ss_pred HHHHCCCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 97510468269999951687634-53899999999999999999709970046633775767775566224566665655
Q ss_pred C--CC--CCCCCCCC---CCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCC
Q ss_conf 6--78--77675567---64100123688632671489834665653467764179712330026010236854334443
Q gi|254780333|r 221 G--GT--DKINKSHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 (370)
Q Consensus 221 G--~~--~~~~~~~~---l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~ 293 (370)
- .. +..-.+.+ ..++..+-++|+.+|.-. +.+.+++-.|+.|-++-.+-+......+.
T Consensus 287 ~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~---------------~~~~vivD~g~~~~~~~~~~~~~~~i~~~ 351 (441)
T 3n2b_A 287 RLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTE---------------HKNFAIIDAAMNDLIRPALYQAWQDIIPL 351 (441)
T ss_dssp HHTTTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC-----------------CEEEEESCCTTTCCC-------CCEEES
T ss_pred HHHCCCCCEEECCCCCCEECCCCEEEEEEEEEEECC---------------CCEEEEEECCCCCCCCHHHHCCCCCEECC
T ss_conf 540366716720775003336617999999986639---------------82599993401100236664464312324
Q ss_pred CCCCCEEEECCEEEEEEEECCC--CCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 2328869999999507700425--6479966887787888789997888
Q gi|254780333|r 294 VFLGGKGFIKGYMVPILGKITM--DMTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 294 ~~~~~~vli~G~~~pivGrv~M--D~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
....+ .-+.+-|+|.+|+ |.+.-|.. .| +++||.+++..-.
T Consensus 352 ~~~~~----~~~~~~i~Gp~C~s~D~l~~~~~-lp-l~~GD~lv~~~~G 394 (441)
T 3n2b_A 352 RPRQG----EAQTYDLVGPVCETSDFLGKDRD-LV-LQEGDLLAVRSSG 394 (441)
T ss_dssp SCCSS----CCEEEEEECSSSSTTCEEEEEEE-EC-CCTTCEEEESSCS
T ss_pred CCCCC----CCEEEEEEECCCCCCCEEEECCC-CC-CCCCCEEEECCCC
T ss_conf 57889----94289998117578859935111-68-9999999984947