BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] (370 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] gi|254040010|gb|ACT56806.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] Length = 370 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 370/370 (100%), Positives = 370/370 (100%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF Sbjct: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV Sbjct: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE Sbjct: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA Sbjct: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG Sbjct: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR Sbjct: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 Query: 361 IGTRYAKFYT 370 IGTRYAKFYT Sbjct: 361 IGTRYAKFYT 370 >gi|83590990|ref|YP_430999.1| alanine racemase [Moorella thermoacetica ATCC 39073] gi|83573904|gb|ABC20456.1| alanine racemase [Moorella thermoacetica ATCC 39073] Length = 373 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 165/380 (43%), Gaps = 25/380 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + +IDL A+ N ++ L+ A+VK NAYG G +A GV V Sbjct: 2 SRPVWAEIDLEAVARNVRAIKKILAPQTEIMAIVKANAYGHGAGPVARTALANGVSWLGV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++ E + LR A + +L P + + ++ + SV Q + + G Sbjct: 62 ATLGEALDLRREGITAPLLILGYTPPEDAGRVVEADISQTVFSVDQARALNAAAAAVGTR 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG RLG +EA+ + L I +H A +D QL Sbjct: 122 ARLHLKIDTGMGRLGFLPREAVTAARAIADLPHVTLEGIFTHFAASDAADKTYTQRQLGL 181 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 F+ +I+ A+S I+ P HF L R GI LYG K + Sbjct: 182 FQQVIAELEKQGITFPWRHAANSGAIIDLPGTHFNLVRAGIILYGHYPSPEVQRKRLALT 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T + R++L+++ AG +SYG + + IA +GYADGY LS Sbjct: 242 PVMTLKTRVVLVKEVPAGSYISYGCTYRTPGPARIATLPVGYADGYSRLLSNR------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + ++G PI+G+I MD M D+T + VGD + +FG + +++VA Sbjct: 295 ----AEVLVRGRRAPIVGRICMDQCMIDVTAIPEVRVGDEVVLFGRQGGQTLTVEEVAAW 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 351 MGTINYEILCLISKRVPRVY 370 >gi|323703375|ref|ZP_08115024.1| alanine racemase [Desulfotomaculum nigrificans DSM 574] gi|323531644|gb|EGB21534.1| alanine racemase [Desulfotomaculum nigrificans DSM 574] Length = 372 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 166/380 (43%), Gaps = 25/380 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 E + +IDL A+++N + L + AVVK N YG G +A A +AG V Sbjct: 2 QEPIWAEIDLGAIRHNIKEVRRLVGPDREIMAVVKANGYGHGAVPVARAALSAGATRLAV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 + E + LR I VL I P Q ++ + S++ G Sbjct: 62 ARLNEAMVLRQAGINVPILVLGFIPPEQLAAALTNHITLTLYRTDLAEEISRVAQKLGQP 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG RLG ++ ++ +L I +H A AD+ QL+R Sbjct: 122 AVIHLKVDTGMGRLGFIPEQGIEEVKRVSQLAGLKLEGIYTHFAAADETDKSYTRWQLDR 181 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---Q 233 F + I A+S+ I+ P + + RPGI +YG + + Sbjct: 182 FLSFISALEEQGVTFALRHCANSAAIIDHPEAYLDMVRPGIIIYGLYPSEEVNKSRVDLR 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + R+ ++ G +SYG + R+++I +GYADGYP LS Sbjct: 242 PAMALKTRVAHLKTVKPGTKISYGCTYTVPRETVIGSLPLGYADGYPRLLSSR------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 G+ I+G PI+G++ MD +M D+ ++VGD + IFG D + +++VA Sbjct: 295 ----GQVIIRGQRAPIVGRVCMDQSMVDVGHIPGVKVGDEVLIFGRDGADYLPVEEVAAW 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ +G R + Y Sbjct: 351 LGTINYEMVCLVGARVPRIY 370 >gi|220931017|ref|YP_002507925.1| alanine racemase [Halothermothrix orenii H 168] gi|254802366|sp|B8D0W1|ALR_HALOH RecName: Full=Alanine racemase gi|219992327|gb|ACL68930.1| alanine racemase [Halothermothrix orenii H 168] Length = 379 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 105/384 (27%), Positives = 179/384 (46%), Gaps = 26/384 (6%) Query: 1 MHSN--EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ +IDL+ L+ N++ + + G N + +VVK +AYG G +A L AG Sbjct: 1 MNKRITRPTWAEIDLSCLQFNFNQVKEILGSNVKIMSVVKADAYGHGVIPVAKTLVEAGT 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LM 116 Q V EEGV+LR I VL + P Q +++F +LIP + ++ Sbjct: 61 QRLAVAIPEEGVELREAGLSVPIQVLGEVLPSQYELLFKYDLIPTVGREETALSLNRLAA 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 V ++VDTG R+G+ +EA+ F + ++ +++H A AD+ Sbjct: 121 KYNVVKKVHIKVDTGMGRIGVRPREAVGFVKKVNSLSNIKIEGLMTHFASADERDKSYTY 180 Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINK--S 229 Q ++F+ ++ + + +S+ I+ + + RPGI LYG + + Sbjct: 181 EQWDKFKQVLDGLNKLRIDIPIKHSSNSAAIIDFKKFGLDMVRPGIMLYGLKPSRDLINN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T + RI+ +++ G +SYG R S IA +GYADGYP LS Sbjct: 241 IDLKPVLTWKTRIVYLKEVPPGTGISYGTTYVTNRKSKIATLPVGYADGYPRILSNQ--- 297 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G+ ++G PI G++ MD M D+T+ + VGD + + G I D Sbjct: 298 --------GQVLVRGRKAPIRGRVCMDQIMIDVTEIPDVRVGDEVVLIGEQGTQKISATD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A + T NY+++ I R + Y Sbjct: 350 IAEKADTINYEIVCGISQRVPREY 373 >gi|255659976|ref|ZP_05405385.1| alanine racemase [Mitsuokella multacida DSM 20544] gi|260847728|gb|EEX67735.1| alanine racemase [Mitsuokella multacida DSM 20544] Length = 369 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 101/376 (26%), Positives = 161/376 (42%), Gaps = 21/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N +IDL AL++N+ + + G A+ AVVK +AYG G +A AG V Sbjct: 3 NRAAWAEIDLAALRHNYEEIKKNIRGGAKLCAVVKADAYGHGALAVARVAVEAGASYLAV 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 ++ E ++LR I +L + P + + I D ++ V+ +P S+ + Sbjct: 63 ATLGEAIELREAGFTVPILLLGLVLPDEARDIVDYDVTQVVCELPLAEAISREAVRQHKT 122 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+V+TG R+G+ +E ++ + SH A AD QL + Sbjct: 123 AKVHLKVETGMGRIGIRPEEIGALAAAVKQLPNIEIEGMFSHFAMADSKDKTYTKGQLAK 182 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--T 234 F + + +A S+ IL P H+ + R G+ YG +HP+ Sbjct: 183 FEQALRAVEEAGVKLKIRHIAESAAILEIPEAHYDMVRAGVIQYGMWPSDEVTHPIDLKP 242 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ A+++ ++ GE + YG Q R+S IA IGYADGY Sbjct: 243 VMKVCAKVVFMKTLHPGESIGYGRQFIAERESRIATLPIGYADGYIRAYGN--------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353 GG G PI G++ MD M D+TD ++ GD +FG + + D A T Sbjct: 294 --GGYVSFGGRKAPIAGRVCMDQVMVDVTDLPDVKEGDTAVLFGDETVTADTAAKWLNTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ I R + Y Sbjct: 352 NYEVTCLISPRVPRVY 367 >gi|134300698|ref|YP_001114194.1| alanine racemase [Desulfotomaculum reducens MI-1] gi|226711040|sp|A4J8G6|ALR_DESRM RecName: Full=Alanine racemase gi|134053398|gb|ABO51369.1| alanine racemase [Desulfotomaculum reducens MI-1] Length = 370 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 168/377 (44%), Gaps = 23/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E + +I+L A+++N + + N AVVK N YG G +A AG V Sbjct: 3 EPIWAEINLEAIRHNIKEIRKMVGPNREIMAVVKANGYGHGAVPVARVALEAGATRLAVA 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 + E +LR + I +L I P Q + N+ + + + G Sbjct: 63 RLSEAQELRRAGLKVPILLLGYISPDQIGDALEYNVTLTVFRFDLAKKIAAIAQGRGQRA 122 Query: 123 PYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG R+G + E L + I +H A AD+ Q +R Sbjct: 123 TVHLKVDTGMGRIGFTPDEEGLAEITAVCALNGLDVEGIYTHFATADEQDKSYTRWQFKR 182 Query: 182 FRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP---MQ 233 F +++ +GI A+S+ I+ P + L RPGI LYG +Q Sbjct: 183 FMLVLNRLEEQGITFSLRHCANSAAIMEFPETYLDLVRPGIILYGLYPSEEVDKGKLLLQ 242 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T +ARI ++K +G +SYG + +++ IA +GYADGYP LS Sbjct: 243 PAMTLKARITHVKKVNSGTKISYGCTYTVPQETDIASLPLGYADGYPRLLS--------- 293 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGT 352 G+ +KG ++G++ MD M D+ ++V D + IF G ++ +++VA GT Sbjct: 294 --SKGQVLVKGKRARVVGRVCMDQCMVDVGHIAEVKVHDEVIIFGGAELPVEEVATWLGT 351 Query: 353 TNYDLLVRIGTRYAKFY 369 NY+++ +G+R + Y Sbjct: 352 INYEVVCWVGSRVPRVY 368 >gi|325292459|ref|YP_004278323.1| Alanine racemase [Agrobacterium sp. H13-3] gi|325060312|gb|ADY64003.1| Alanine racemase [Agrobacterium sp. H13-3] Length = 391 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 186/368 (50%), Positives = 248/368 (67%), Gaps = 2/368 (0%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + LRL +DL AL +NW M SG ARTAAVVK +AYGLG E LY+AG +DFFV Sbjct: 19 HAPLRLTVDLGALADNWRDMKKRSGKARTAAVVKADAYGLGIEDCGATLYHAGARDFFVA 78 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +V EG LR Y P+ARIFVL GI GQE+ +FD +L+PV++S QL+F+ ++ HP Sbjct: 79 TVSEGATLRSYAPEARIFVLSGIWQGQERQVFDNDLVPVLASEEQLSFWMATVAERGEHP 138 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 AL VDTGFNRLGL L +AL + L++SHLACAD PSS +N VQLE FR Sbjct: 139 CALHVDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNKVQLESFR 198 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + + ++GIE+SL++S+GI LGP+YHF LTRPGI+LYGG + ++PM+ V AEARII Sbjct: 199 KVSAAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAINDVANPMRPVAKAEARII 258 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 IR+A G+ VSYGG L R S +A+A++GYADGY +LSG G G + Sbjct: 259 QIREAGEGQTVSYGGTYLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGIVN 318 Query: 304 GYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 G+ P+ G++TMD+T+FDITD ++ GDYI++FGP + LD+VA A+GT Y++L + Sbjct: 319 GHKAPVAGRVTMDLTIFDITDIPANAVRTGDYIELFGPKVPLDEVARAAGTIGYEMLTGL 378 Query: 362 GTRYAKFY 369 G RY + Y Sbjct: 379 GLRYERQY 386 >gi|313903544|ref|ZP_07836934.1| alanine racemase [Thermaerobacter subterraneus DSM 13965] gi|313466097|gb|EFR61621.1| alanine racemase [Thermaerobacter subterraneus DSM 13965] Length = 394 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 104/379 (27%), Positives = 168/379 (44%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++DL A+ +N ++ L+ A+ AVVK + YG G +A G + V Sbjct: 11 RPTWVEVDLDAIAHNVQTLQRLAAPAQLMAVVKADGYGHGAVMVARTALAHGARRLAVAV 70 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 VEEGV LR I V+ P Q + L +SS + ++ G Sbjct: 71 VEEGVHLRQSAIACPILVMGWTPPWQYALALRYELELAVSSEEEARALAEAARRDGRKVR 130 Query: 124 YALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG RLGL + + +++ + +HLA ADDP + + QL R Sbjct: 131 VHIKIDTGMGRLGLRWDQPRLAEVVARIAGLGGLEVAGVFTHLATADDPEAPLTEDQLGR 190 Query: 182 FRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQT 234 F ++ +G+ L ++ L P + L RPGI+LYG + +Q Sbjct: 191 FDRVLQALDERGLRPGLRHAANSAALLRLPGARYDLVRPGIALYGLEPFPGAVAAFGLQP 250 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + R+ L+++ G +SYG R S IA +GYADG LS Sbjct: 251 ALAWKTRVALVKEVPPGTPISYGATFVTRRRSRIATLPVGYADGLRRALSNR-------- 302 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALAS 350 G+ + G VPI+G++ MD M D+TD+ + VGD + + G I D++A Sbjct: 303 ---GQVLVGGRRVPIVGRVCMDQVMVDVTDAGPVAVGDEVVLIGRQGGEQITADEMAGWM 359 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y+++ IG R + Y Sbjct: 360 DTIGYEVVTGIGRRVPRIY 378 >gi|302390446|ref|YP_003826267.1| alanine racemase [Thermosediminibacter oceani DSM 16646] gi|302201074|gb|ADL08644.1| alanine racemase [Thermosediminibacter oceani DSM 16646] Length = 391 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 170/378 (44%), Gaps = 26/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++I+L L++N + ++ NA AVVK +AYG G ++A + G + V Sbjct: 6 RPTRVEINLDNLEHNLKEIRRITSPNAGICAVVKADAYGHGAVEVAMTALSFGAKYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E V LR +A I +L Q I + + + +V S+ G+ Sbjct: 66 FLDEAVVLREAGIRAPILILGFTPEDQFDKILEYGITQTVYNVRSAEVLSREAQKRGMKA 125 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG +R+G + +L F ++ I +H A AD+ Q ++ Sbjct: 126 KVHIKLDTGMSRIGFPAEPSSLSDIEKVFLLPGIEVEGIFTHFARADEEDKSFTEEQYKK 185 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 +R + + +A+S+ I+ P H + RPGI LYG Sbjct: 186 YRETVGVLESRGLRVPIKHVANSAAIIDMPGMHLDMVRPGIILYGIYPSEEVQRSRITLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T + R+ ++ AG +SYGG + S+IA +GYADGYP LS Sbjct: 246 PVMTFKTRVSHVKTVPAGTPISYGGTFVTKKTSVIATLPVGYADGYPRLLSSR------- 298 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 + IKG P++G++ MD M D+TD ++ GD +++FG + D++A Sbjct: 299 ----AEVVIKGRRAPLVGRVCMDQCMVDVTDIPGVQPGDEVELFGTGENGGVTADEIAKI 354 Query: 350 SGTTNYDLLVRIGTRYAK 367 GT Y+++ I R + Sbjct: 355 VGTIPYEIVCGISKRVPR 372 >gi|51894072|ref|YP_076763.1| alanine racemase [Symbiobacterium thermophilum IAM 14863] gi|81826014|sp|Q67K79|ALR_SYMTH RecName: Full=Alanine racemase gi|51857761|dbj|BAD41919.1| alanine racemase [Symbiobacterium thermophilum IAM 14863] Length = 377 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 23/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++DL A++ N ++ +S R AVVK N YG G +A A AG V S Sbjct: 7 RPTWAEVDLNAVRANIRALKRISKAPRLMAVVKANGYGHGAVPVATAAIEAGADWLGVAS 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123 VEEGV LR + A I VL + PGQ + + L + ++ G Sbjct: 67 VEEGVTLRRHGISAPILVLGYVSPGQAEAVLTEGLRVALFDGELGQALNREGRRLGRWAR 126 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182 L+VDTG R+GL E ++ + +HLA AD+P + +QLER+ Sbjct: 127 VHLKVDTGMGRIGLQPAEVGRLGRELARLDHVEVEGVFTHLATADEPGNPYTRLQLERYE 186 Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVV 236 + + A+S+G++L P H+ + R GI++ G + P++ + Sbjct: 187 AALAELAAAGVRPAIRHAANSAGLMLHPEAHYDMVRSGIAVVGLPPAPGVAWPVKLAPAL 246 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + R+ L++ AG +SYG R IA +GYADGYP LS Sbjct: 247 TWKTRVGLVKWLEAGHSISYGCTYTTARREQIATLPVGYADGYPRRLSNR---------- 296 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352 + I+G P++G +TMD M + D L + VGD + + G +I ++A + T Sbjct: 297 -AQVLIRGRRCPVVGVVTMDQMMVRVPDDLPVRVGDEVVLIGRQGGEEITATELAGLADT 355 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y+++ I R +FY Sbjct: 356 ISYEIVCGISRRVPRFY 372 >gi|222148127|ref|YP_002549084.1| alanine racemase [Agrobacterium vitis S4] gi|221735115|gb|ACM36078.1| alanine racemase [Agrobacterium vitis S4] Length = 387 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 186/366 (50%), Positives = 243/366 (66%), Gaps = 2/366 (0%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 LR+ IDL AL +NW M SG AR AVVK + YG+G E LYNAG +DFFV Sbjct: 18 PLRVTIDLQALADNWRDMAKRSGKARAGAVVKADGYGIGIEDSGQTLYNAGARDFFVALP 77 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG LR Y P ARIFVL GI G E + F+ +L+PVI+S QL F+ + ++ HP A Sbjct: 78 SEGATLRTYAPDARIFVLSGIWEGMEPLFFEHDLVPVIASEEQLAFWMRTVADQGDHPCA 137 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L VDTGFNRLGLS+ +AL + LI+SHLACADDPSS +N QL+ F + Sbjct: 138 LHVDTGFNRLGLSMDDALFLATDVSRPASFSPVLILSHLACADDPSSPMNQKQLQAFHQV 197 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + ++GIE+SL++S+G LLGP+YHF LTRPGI+LYGG +PM+ VV AEARI+ I Sbjct: 198 SAAFEGIESSLSASAGTLLGPDYHFDLTRPGIALYGGEAVTGLPNPMRPVVKAEARILQI 257 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+A GE VSYG +LTR+S +AVA++GYADGY LSG + + G G I GY Sbjct: 258 RQARNGETVSYGATCQLTRESRLAVASVGYADGYLRNLSGHGTALRDTGSPGAYGSIAGY 317 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 VP++G+ITMDMT+FD++D I GDYI++FGP++ +DDVA A+GT Y++L +G Sbjct: 318 QVPVVGRITMDMTIFDVSDVPEKAIAAGDYIELFGPNMPIDDVARAAGTIGYEMLTGLGL 377 Query: 364 RYAKFY 369 RY + Y Sbjct: 378 RYERHY 383 >gi|90417095|ref|ZP_01225023.1| alanine racemase [marine gamma proteobacterium HTCC2207] gi|90331111|gb|EAS46367.1| alanine racemase [marine gamma proteobacterium HTCC2207] Length = 358 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 106/370 (28%), Positives = 169/370 (45%), Gaps = 18/370 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + IDL AL++N+ +L+ ++T +VK NAYG G K++ AL + F V Sbjct: 2 SRPTKAVIDLQALRHNYELAQSLAPKSKTIPMVKANAYGHGAIKVSQALSDI-APAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR + I +L G E + T V+ Q + Sbjct: 61 CIEEALELRDTGIKQPILLLEGTFEATELKLAATKGFWVMVENHQQKEAILNADLALPLN 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L VDTG +RLG E D + ++ + Q + SH ACAD+ S Q++ F Sbjct: 121 VWLGVDTGMHRLGFQPGEIADIYKTLNSSRNISQPIVFTSHFACADNLDSDSTLKQIQTF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAE 239 + SLA+S+ IL P + RPG LYG + + ++ V++ E Sbjct: 181 KAC--APVTALQSLANSAAILAWPKAQREWQRPGYMLYGNSPFAVAQENADQLKPVMSFE 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +R AGE V Y R+S IA +GY DGYP G Sbjct: 239 SAVISLRTIAAGESVGYTANWTAERESTIATITVGYGDGYPRNAIN-----------GTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G P++G+++MDM D+T + +GD ++GP++ +++VA T Y+LL Sbjct: 288 VLINGIRCPLVGRVSMDMITVDVTALSEVAIGDKAVLWGPELPVNEVASYCDTIGYELLT 347 Query: 360 RIGTRYAKFY 369 R+ R + Y Sbjct: 348 RMPERVPRVY 357 >gi|254481208|ref|ZP_05094453.1| alanine racemase [marine gamma proteobacterium HTCC2148] gi|214038371|gb|EEB79033.1| alanine racemase [marine gamma proteobacterium HTCC2148] Length = 360 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 166/374 (44%), Gaps = 19/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M RL DL AL++N L+ + VVK N YG G +A Sbjct: 1 MARANQARL--DLAALRHNLAHARQLAPECKVMCVVKANGYGHGALNVARVFAPM-ADAL 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR + I +L G+ QE II V+ Q ++ + Sbjct: 58 AVACIEEAIELRDGGIETPILLLQGVFEAQELIIASQQNFWVMVDNRQHLYWLEQARLPA 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQL 179 L++DTG +RLG+ +EA +F + + + +H A AD+ + QL Sbjct: 118 PVTCWLKIDTGMHRLGVQPEEAAEFHQRLSSCENRTGELVTCTHFASADELDKPQTTEQL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVV 236 F ++ + G S A+SSG+L PN H+ RPG LYG + V+ Sbjct: 178 ALFESITADLPG-PRSAANSSGLLGWPNSHYDWIRPGYMLYGNSPFTATHPNTDTLHPVM 236 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +I IR +GE V Y R S IA +IGY DGYP + Sbjct: 237 TLCSAVISIRNVASGESVGYAANWTAQRPSRIATVSIGYGDGYPRLAAN----------- 285 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G I G P+ G+++MDM DITD +++GD + ++G ++ + +VA +GT Y+ Sbjct: 286 GTPVLINGQRAPLAGRVSMDMITVDITDLDDVKLGDQVILWGEELPVSEVAAHAGTIGYE 345 Query: 357 LLVRIGTRYAKFYT 370 L R+ R + T Sbjct: 346 LTTRMPARTPRVVT 359 >gi|312142736|ref|YP_003994182.1| alanine racemase [Halanaerobium sp. 'sapolanicus'] gi|311903387|gb|ADQ13828.1| alanine racemase [Halanaerobium sp. 'sapolanicus'] Length = 377 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 106/381 (27%), Positives = 172/381 (45%), Gaps = 24/381 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 S + ++IDL LK N + L+ + AVVK + YG G A A AG Sbjct: 7 KSKRPVWVEIDLNNLKFNIKEIKKTLNSDTIFTAVVKADGYGHGAVPTAEAAIEAGADRL 66 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119 V EEG++LR A I +L + P Q + +LIP IS + Sbjct: 67 AVAIPEEGIELREAGIAAPIEILGELLPEQLPELIRYDLIPTISKFKTAERLNNLCAGYN 126 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + L +DTG NR+G++ ++AL ++ I++H A AD+ +Q Sbjct: 127 LKKKIHLNIDTGMNRVGVNYKKALPLLKKITELPNLEIEGIMTHFARADELEKEYTLIQW 186 Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPM 232 ERF LI + A+S+ ++ P + + R GI +YG + + + + Sbjct: 187 ERFNQLIEKLEAENIEIPIKHCANSAAVIDFPEFALDMVRAGIMIYGLKPSPDLKNNFNL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ ++RI+ ++ AGE +SYG + + IA +GYADGY L Sbjct: 247 KAVLSWKSRIVRLKDVPAGEGISYGSEYITPKREKIATIPLGYADGYARILGN------- 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 +KG PI G+I MD M D++ ++VGD + + G + D +A Sbjct: 300 ----KASVLVKGKRAPIRGRICMDQFMVDVSGIEGVKVGDEVVLIGSQNGLSLSADKLAE 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +GT NY+++ RI R A+ Y Sbjct: 356 QAGTINYEIVSRISKRVARIY 376 >gi|225174429|ref|ZP_03728428.1| alanine racemase [Dethiobacter alkaliphilus AHT 1] gi|225170214|gb|EEG79009.1| alanine racemase [Dethiobacter alkaliphilus AHT 1] Length = 379 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 106/381 (27%), Positives = 168/381 (44%), Gaps = 26/381 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +IDL A+ +N S R A+VK + YG G ++A AGV V Sbjct: 6 QRPAWAEIDLGAIGHNIRQFKQHVSSQTRLMAIVKADGYGHGAVEVAREAVAAGVSFLGV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVS 121 VEE ++LR I +L + NL P + + F + G Sbjct: 66 GMVEEALELRENGIDTPILILGFTPKAYAPYLCQYNLTPTVFTPEEADAFAEAALRAGND 125 Query: 122 HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++VDTG R+G ++A F + + L+ + +H A ADDP + QLE Sbjct: 126 LAVHVKVDTGMGRVGCFPCEDADGFISHVASLPGLSLTGLYTHFAAADDPDATYTRWQLE 185 Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232 RF LI+ + + +S+G + P H + R GIS+YG + + Sbjct: 186 RFLKLIARLEARGIHIPVKHAANSAGAISHPETHLDMVRLGISVYGLYPADEVCRREVKL 245 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ +A++I ++ AG VSYG R + IA +GY DGYP LS Sbjct: 246 RPAMSLKAKVIFVKDVPAGTKVSYGCTYVTERAARIATLPLGYGDGYPRHLSNC------ 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G+ I G P++G++ MD+TM D+ D + GD + +FG + +D+VA Sbjct: 300 -----GQVLIHGRRAPVVGRVCMDLTMIDVQDIAEVSAGDEVVLFGRQGDAFLSVDEVAR 354 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY+++ RI R + Y Sbjct: 355 WIDTINYEVVTRISRRIPRVY 375 >gi|227821452|ref|YP_002825422.1| alanine racemase [Sinorhizobium fredii NGR234] gi|227340451|gb|ACP24669.1| alanine racemase [Sinorhizobium fredii NGR234] Length = 409 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 178/375 (47%), Positives = 241/375 (64%), Gaps = 6/375 (1%) Query: 1 MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 MHS EFL RL IDLTA+ +NW +MN SG AR AAV+K NAYG+G + AP LY AG Sbjct: 31 MHSPEFLAASNRLTIDLTAIADNWRTMNERSGKARAAAVLKANAYGIGVAQAAPTLYAAG 90 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 +DFFV EEG +LR P ARI++L G+ PG E+ F +L+P+I+S QL + + Sbjct: 91 ARDFFVADAEEGAELRPLLPDARIYILAGMWPGNEEFFFANDLVPIINSEEQLAVFMAAL 150 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 S HP L VDTG NRLGLS++EA+ H+ L++SHLAC DDP +N Sbjct: 151 SERGDHPCVLHVDTGMNRLGLSVEEAIALAHDPARPASFSPVLVMSHLACGDDPRHPMNL 210 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG + +PM+ VV Sbjct: 211 YQLQRFREVTAAFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVNDALNPMKPVV 270 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 TAEARI+ +R +G SYG + RDS IA AIGYADGY ++SG + Sbjct: 271 TAEARILQLRTVPSGGTASYGASARFARDSRIATVAIGYADGYHRSVSGGGVTLRQATPS 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354 G GF+ G VP +G++TMD+++FD+TD + GDYI++FG ++ +DDVA A GT Sbjct: 331 GAYGFLHGKKVPHVGRVTMDLSLFDVTDLPERAVRAGDYIELFGRNVAIDDVARAGGTIG 390 Query: 355 YDLLVRIGTRYAKFY 369 Y+LL +G RY + Y Sbjct: 391 YELLTSLGHRYCRTY 405 >gi|317121110|ref|YP_004101113.1| alanine racemase [Thermaerobacter marianensis DSM 12885] gi|315591090|gb|ADU50386.1| alanine racemase [Thermaerobacter marianensis DSM 12885] Length = 394 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 104/379 (27%), Positives = 164/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++DL A+ +N ++ L+ A+ AVVK + YG G +A G + V Sbjct: 11 RPTWVEVDLDAIAHNVQTLQRLAAPAQLMAVVKADGYGHGAVMVARTALAHGARRLAVAV 70 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123 VEEGV LR I V+ P Q + +L +SS G Sbjct: 71 VEEGVHLRQSAIACPILVMGWTPPWQYSLALRYDLELAVSSEDEARALAEAARREGRKVR 130 Query: 124 YALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG RLGL + ++ + +HLA ADDP + + QL R Sbjct: 131 VHLKVDTGMGRLGLRWDHPRLAETAARIAGLGGLEVVGVFTHLATADDPEAPLTEDQLAR 190 Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQT 234 F ++ + + A+S+ +L P + L RPGI+LYG + ++ Sbjct: 191 FARIVHALDERGLRPLLRHAANSAALLRLPGARYDLVRPGIALYGLEPFPGAVAAFGLRP 250 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + R+ L+++ G +SYG R S IA +GYADG LS Sbjct: 251 ALAWKTRVALVKEVPPGTPISYGATFVTRRRSRIATLPVGYADGLRRALSNR-------- 302 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 G+ + G PI+G++ MD M D+TD+ + VGD + + G I D++A Sbjct: 303 ---GQVLVGGRRAPIVGRVCMDQVMVDVTDAGPVAVGDEVVLIGRQGDQQITADEMAGWM 359 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y+++ IG R + Y Sbjct: 360 DTIGYEVVTGIGRRVPRIY 378 >gi|150402682|ref|YP_001329976.1| alanine racemase [Methanococcus maripaludis C7] gi|150033712|gb|ABR65825.1| alanine racemase [Methanococcus maripaludis C7] Length = 373 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 169/384 (44%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S+ + +IDL+A+KNN + ++ ++ AVVK NAYG G +++ G Sbjct: 1 MVSH-PIWAEIDLSAIKNNIQEIRRITNPKSQVMAVVKANAYGHGAIEVSKVCLENGADR 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 V E ++LR I V + + + + ++ + S K+ Sbjct: 60 LAVARSTEALELRNAGITCPILVFGYCTEEEIEKMVENDITLTVYSFETAESIQKIAEKL 119 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G ++VDTG RLG +EA++ K ++ I +H A AD+ ++ Sbjct: 120 GKHSKIHIKVDTGMGRLGFLPKKEAIETIKKIMELKNIKIEGIYTHFADADNSDKSYTTM 179 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKI---NKS 229 Q RF + + + E + +S+ I+ P H L RPGI LYG + Sbjct: 180 QFSRFTNFLHNLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKER 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ + I +++ +SYG + + S IA IGYADG+ L Sbjct: 240 INLKPAMSLKVLITHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKD---- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 G I G VP++G+I MD M D++D +++VGD + IFG I +++ Sbjct: 296 --------GYVLIHGSRVPVIGRICMDQCMIDVSDIENVQVGDVVTIFGTQENEKIPIEE 347 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 GT NY+L+ + R + Y Sbjct: 348 FGEKLGTINYELVCMVAGRVPRKY 371 >gi|15888423|ref|NP_354104.1| alanine racemase [Agrobacterium tumefaciens str. C58] gi|20137302|sp|P58736|ALR1_AGRT5 RecName: Full=Alanine racemase, biosynthetic gi|15156111|gb|AAK86889.1| alanine racemase [Agrobacterium tumefaciens str. C58] Length = 391 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 183/368 (49%), Positives = 246/368 (66%), Gaps = 2/368 (0%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 LRL +DL AL +NW M SG ARTAAVVK +AYGLG E LY+AG +DFFV Sbjct: 19 QAPLRLTVDLGALADNWRDMKKRSGRARTAAVVKADAYGLGIEDCGATLYHAGARDFFVA 78 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +V EG LR Y P+ARIFVL GI GQE+ +FD +L+PV++S QL+F+ ++ HP Sbjct: 79 TVAEGATLRSYAPEARIFVLSGIWQGQERQVFDNDLVPVLASEEQLSFWMATVAERGDHP 138 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 AL VDTGFNRLGL L +AL + L++SHLACAD PSS +N QLE FR Sbjct: 139 CALHVDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNRAQLESFR 198 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + + ++GIE+SL++S+GI LGP+YHF LTRPGI+LYGG + ++PM+ V AEARII Sbjct: 199 RVSAAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAVNDVANPMRPVAKAEARII 258 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 IR+A G+ VSYG L R S +A+A++GYADGY +LSG G G + Sbjct: 259 QIREAGEGQTVSYGSSFLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGVVN 318 Query: 304 GYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 G+ VP+ G++TMD+T+FD+TD +I GDYI++FGP++ +D+ A A+GT Y++L + Sbjct: 319 GHKVPVAGRVTMDLTIFDVTDVPANAIRAGDYIELFGPNVPVDETARAAGTIGYEMLTGL 378 Query: 362 GTRYAKFY 369 G RY + Y Sbjct: 379 GLRYERQY 386 >gi|159905543|ref|YP_001549205.1| alanine racemase [Methanococcus maripaludis C6] gi|159887036|gb|ABX01973.1| alanine racemase [Methanococcus maripaludis C6] Length = 373 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S+ + +IDL+A+KNN + ++ ++ AVVK NAYG G +++ G Sbjct: 1 MVSH-PIWAEIDLSAIKNNIKEIRRITNPKSQVMAVVKANAYGHGAIEVSKVCLENGADR 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V E ++LR I V + + + + ++I + S+ K+ Sbjct: 60 LAVARSTEALELRNAGITCPILVFGYCTEEEIEKMVENDIILTVYSLETANSIQKIAEKL 119 Query: 120 VSHPY-ALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 HP +++DTG +RLG + EA++ K ++ I +H A AD+ ++ Sbjct: 120 GEHPKIHIKLDTGMSRLGFLPEKEAVEAIQKIMELKNIEVEGIYTHFADADNSDKTYTTM 179 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKI---NKS 229 Q RF + + E + +S+ I+ P H L RPGI LYG + Sbjct: 180 QFSRFTNFLHDLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKER 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ + + +++ +SYG + + S IA IGYADG+ L Sbjct: 240 IDLKPAMSLKVLVTHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKD---- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 G I G VP++G+I MD M D++D +++VGD + IFG I +++ Sbjct: 296 --------GYVLIHGSRVPVIGRICMDQCMIDVSDIENVQVGDVVTIFGTQEHEKIPIEE 347 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 GT NY+L+ + R + Y Sbjct: 348 FGEKLGTINYELVCMVANRVPRKY 371 >gi|222085428|ref|YP_002543958.1| alanine racemase [Agrobacterium radiobacter K84] gi|221722876|gb|ACM26032.1| alanine racemase [Agrobacterium radiobacter K84] Length = 387 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 185/365 (50%), Positives = 243/365 (66%), Gaps = 2/365 (0%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DL AL NW M SG ART+AVVK +AYGLG E + ALY AG +DFFV + + Sbjct: 16 LRLTVDLDALVENWRDMAHRSGRARTSAVVKADAYGLGIEDVGEALYLAGARDFFVATAD 75 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG LRLY P ARIFVL GI PG E++ F+ +L+PVI+S QLTF+ ++S +P AL Sbjct: 76 EGATLRLYAPDARIFVLSGIWPGMERVFFENDLVPVIASEEQLTFWMSVLSDYGDYPCAL 135 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVDTGFNRLGL +++AL + L++SHLAC DDP++ +N QLE FR + Sbjct: 136 QVDTGFNRLGLPMEDALALADDVSRPASFAPVLVMSHLACGDDPANPMNRQQLEAFRKVS 195 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + ++GIEASLA+S+GI LGP YHF LTRPGI+ YGG ++PM+ V TAEARII R Sbjct: 196 AAFEGIEASLANSAGIFLGPEYHFDLTRPGIATYGGEAVPGIANPMRPVATAEARIIQTR 255 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE V YG +LTRDS +A+ + GYADGY S + GG GFI G+ Sbjct: 256 FVKAGETVGYGRAMQLTRDSRLAIVSAGYADGYMRGQSSGGVPLRQTDLPGGHGFIAGHR 315 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+ITMD+T+FDITD + GDY+++FG +I +DD A A+GT Y++L +G R Sbjct: 316 VPVAGRITMDLTIFDITDLPDNLVRAGDYVELFGSNILVDDAARAAGTIGYEMLTSLGLR 375 Query: 365 YAKFY 369 + + Y Sbjct: 376 HERRY 380 >gi|227824623|ref|ZP_03989455.1| alanine racemase [Acidaminococcus sp. D21] gi|226905122|gb|EEH91040.1| alanine racemase [Acidaminococcus sp. D21] Length = 381 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 103/380 (27%), Positives = 165/380 (43%), Gaps = 22/380 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + ++DL+A+ +N L + AVVK +AYG G +A A AGV Sbjct: 1 MRARN-VWAEVDLSAIAHNVQVTRKVLKPGTKICAVVKADAYGHGAVPVATAALAAGVNY 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSC 118 V+ +E ++LR A I +L + EK + D N+ + + + + Sbjct: 60 LAVSMTQEALELREAGIMAPILILGTMTEEHEKALVDYNITQTVYDLAVAQELSAAALQE 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L VDTG NR+G +EA D +L + SH A AD+ Q Sbjct: 120 NKVAKVHLAVDTGMNRIGCRPEEAADLAEAISKLPHVELEGMFSHFASADEMDKSFAESQ 179 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHP 231 +F K + +S+GI + + R GI+LYG + + Sbjct: 180 YRKFMEADRAIKDRGIQIPLVHIDNSAGITEMKHTECDMVRQGITLYGLWPSDDVERCLD 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ +A ++ ++ AGE + YG + +A +GYADGY LS Sbjct: 240 LKPALSLKAEVVFVKDVPAGEKIGYGCTYETKAPMKVATIPLGYADGYSRALSNR----- 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALAS 350 G I+GY P++G+I MD M D+T+ + GD IFGP + LD +A Sbjct: 295 ------GYITIRGYKAPVVGRICMDQFMVDVTNVPGVHKGDEAVIFGPGGVSLDQLAKWV 348 Query: 351 GTTNYDLLVRIGTRYAKFYT 370 GT Y+L+ + TR + YT Sbjct: 349 GTIPYELMCLLSTRVPRKYT 368 >gi|167036911|ref|YP_001664489.1| alanine racemase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039616|ref|YP_001662601.1| alanine racemase [Thermoanaerobacter sp. X514] gi|256751517|ref|ZP_05492394.1| alanine racemase [Thermoanaerobacter ethanolicus CCSD1] gi|300915134|ref|ZP_07132449.1| alanine racemase [Thermoanaerobacter sp. X561] gi|307725058|ref|YP_003904809.1| alanine racemase [Thermoanaerobacter sp. X513] gi|320115330|ref|YP_004185489.1| alanine racemase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853856|gb|ABY92265.1| alanine racemase [Thermoanaerobacter sp. X514] gi|166855745|gb|ABY94153.1| alanine racemase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749601|gb|EEU62628.1| alanine racemase [Thermoanaerobacter ethanolicus CCSD1] gi|300888858|gb|EFK84005.1| alanine racemase [Thermoanaerobacter sp. X561] gi|307582119|gb|ADN55518.1| alanine racemase [Thermoanaerobacter sp. X513] gi|319928421|gb|ADV79106.1| alanine racemase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 388 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 159/379 (41%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +I L + +N + G + VVK NAYG G ++A L GV V Sbjct: 6 RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLGVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++EE ++LR I V Q K + N+ + + + ++ G Sbjct: 66 TIEEALELRECGINIPILVFGYTPLPQAKELIVHNITQTVFDINYVKDLERIALNVGKKA 125 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG R+G L A + ++ I SH A +D+ Q + Sbjct: 126 KVHVKVDTGMGRIGYTDLNVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDKTYAEQQFDM 185 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQT 234 F+ L+ K E +A+S I+ + + RPGI LYG N P ++ Sbjct: 186 FKKLLESLKQKEINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSENVERPLDLRQ 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ G +SYG R S IA +GYADG+ LS Sbjct: 246 TMGFKTKIVYIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLSNNH------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 +KG P++G+I MD TM D+TD +EVGD + IFG I +++A Sbjct: 299 ----HVLVKGKYAPVIGRICMDQTMLDVTDIEGVEVGDDVTIFGNQDGEKITAEEIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ I R + Y Sbjct: 355 NTIPYEVYCGISRRVPRIY 373 >gi|326390394|ref|ZP_08211952.1| alanine racemase [Thermoanaerobacter ethanolicus JW 200] gi|325993512|gb|EGD51946.1| alanine racemase [Thermoanaerobacter ethanolicus JW 200] Length = 384 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +I L + +N + G + VVK NAYG G ++A L GV V Sbjct: 6 RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++EE ++LR I V+ Q K + N+ + + + ++ G Sbjct: 66 TIEEALELRECGINIPILVIGYTPLTQAKELIVHNITQTVFDINYVKDLERIALNVGKKA 125 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G L+ A + ++ I SH A +D+ + Q + Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKNKTYAEKQFDV 185 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234 F+ L+ K +A+S I+ + + RPGI LYG ++ + ++ Sbjct: 186 FKKLLERLKEKRINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVERPLDLKQ 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ G +SYG R S IA +GYADG+ LS Sbjct: 246 TMGFKTKIVHIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLSNNH------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 +KG P++G+I MD TM D+TD +E+GD + IFG I D++A Sbjct: 299 ----HVLVKGKYAPVIGRICMDQTMIDVTDIEGVELGDDVVIFGNQEGEKITADEIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ I R + Y Sbjct: 355 NTIPYEVYCGISRRVPRIY 373 >gi|134045109|ref|YP_001096595.1| alanine racemase [Methanococcus maripaludis C5] gi|132662734|gb|ABO34380.1| alanine racemase [Methanococcus maripaludis C5] Length = 373 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S+ + +IDL+A+KNN + ++ ++ AVVK NAYG G +++ G Sbjct: 1 MVSH-PIWAEIDLSAIKNNIEEIRRITNPKSQVMAVVKANAYGHGAVEVSKVCLENGADR 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 V E ++LR I V + + + + ++ + S + K Sbjct: 60 LAVARSTEALELRNAGITCPILVFGYCTEEEIEKMVENDITLTVYSFETASSIQKTAEKL 119 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G ++VDTG +RLG ++A++ + ++ I +H A AD+ ++ Sbjct: 120 GKHPKIHIKVDTGMSRLGFLPRKDAVETIQKIMELENIEVEGIYTHFADADNSDKTYTTL 179 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKI---NKS 229 Q RF + + E + +S+ I+ P H L RPGI LYG + Sbjct: 180 QFSRFTNFLHDLEENEIFIPIKHASNSAAIIDHPETHLNLVRPGIILYGLYPSELVHKER 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ + + +++ +SYG + + S IA IGYADG+ L Sbjct: 240 INLKPAMSLKVLVTHVKEVPENTKISYGCTFETKKPSKIASLPIGYADGFTRMLKN---- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G I G VP++G+I MD M D++ +++VGD + IFG I +++ Sbjct: 296 --------GYVLIHGSRVPVIGRICMDQCMIDVSYIENVQVGDVVTIFGTQENETIPIEE 347 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 GT NY+L+ + +R + Y Sbjct: 348 FGEKLGTINYELVCMVASRVPRKY 371 >gi|304437288|ref|ZP_07397248.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369780|gb|EFM23445.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 368 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 165/376 (43%), Gaps = 22/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N +IDL AL +N+ + + A+ AVVK +AYG G A + G V Sbjct: 3 NRAAWAEIDLGALAHNYREIRSRIQKGAKLCAVVKADAYGHGAIAAARVALDEGADYLAV 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 ++ E +KLR A + +L + P + + D ++ + + + S+ G + Sbjct: 63 ATLSEALKLRAAGFTAPLLILGLVEPESAREVVDGDITQTVCRMDLVEALSQEAVRQGKT 122 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L ++TG R+G+ ++A + +L + SH A AD P Q++ Sbjct: 123 VKVHLTIETGMGRIGVHPKDAAETAKKIAALPNVELEGVFSHFALADIPDKTFTKQQVKL 182 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234 F+ + + S+ IL P+ HF + R GI YG + P+ + Sbjct: 183 FKDACDAIEAAGIHIPIKHIAESAAILEIPDVHFDMVRAGIIQYGLWPSDEVTCPIDLRP 242 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ARI+ I+ GE V YG + R++ IA +GYADGY Sbjct: 243 CMKFCARIVYIKTIQPGESVGYGRKFIAERETRIATLPVGYADGYIRA------------ 290 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353 + GG + G PI G++ MD M D+TD ++GD +FG D + D++A + T Sbjct: 291 YAGGSVEVCGKRAPIAGRVCMDQFMIDVTDIPEAKLGDVCTLFGSDSLTADEIAGWANTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLVSERVPRVY 366 >gi|15893783|ref|NP_347132.1| alanine racemase [Clostridium acetobutylicum ATCC 824] gi|20137418|sp|Q97LR2|ALR1_CLOAB RecName: Full=Alanine racemase 1 gi|15023352|gb|AAK78472.1|AE007563_12 Alanine racemase [Clostridium acetobutylicum ATCC 824] gi|325507906|gb|ADZ19542.1| alanine racemase [Clostridium acetobutylicum EA 2018] Length = 386 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 106/384 (27%), Positives = 168/384 (43%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +IDL + N + S + VVK +AYG G +AP L G Sbjct: 1 MFRHIRPVWAEIDLDNIAYNMQQIRRCSKSDEIIGVVKADAYGHGAVDVAPVLLENGANR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 V + E V+LR Q I +L I ++ + S S+ Sbjct: 61 LAVAVISEAVELRKSGIQCPIMILGYTPLSLVDSIIKYSIEQTVFSYDYAEKLSEAARQK 120 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++ + +DTG R+G +E++ + + I SH + +D+ + Sbjct: 121 NITLRIHIALDTGMGRIGFLPTEESVWEVYKISKLSNIIIEGIFSHFSTSDETNKEYTYA 180 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 QL++F + + + +S+ I+ P HF+ TRPGI LYG Sbjct: 181 QLKKFEWFYNELRKKNIKINIRHIGNSAAIMELPETHFEATRPGIILYGYYPSNEVDKNK 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++T + ++ I+K + GE VSYG + K R+S+IA +GYADGY LSG Sbjct: 241 LNLKPIMTLKTNVVHIKKMMPGEYVSYGRKFKCERESIIATLPVGYADGYTRMLSG---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 K I G P++G+I MD M DITD S++VGD + I G DD Sbjct: 297 -------KAKVIINGNYAPVIGRICMDQCMIDITDLPSVQVGDEVVIMGESDDKKFTADD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+++ I R + Y Sbjct: 350 MAEIIGTINYEVICMISKRVPRVY 373 >gi|307267174|ref|ZP_07548681.1| alanine racemase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917790|gb|EFN48057.1| alanine racemase [Thermoanaerobacter wiegelii Rt8.B1] Length = 384 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 162/379 (42%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +I L + +N + G + VVK NAYG G ++A L GV V Sbjct: 6 RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACQVAKVLIENGVSYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++EE ++LR I V+ Q K + N+ + + + ++ G Sbjct: 66 TIEEALELRECGINIPILVIGYTPLTQAKELIVHNITQTVFDINYVKDLERIALNVGKKA 125 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G L+ A + ++ I SH A +D+ + Q + Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKNKTYAEKQFDM 185 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234 F+ L+ K +A+S I+ + + RPGI LYG ++ + ++ Sbjct: 186 FKKLLERLKEKGINIPLKHIANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVERPLDLKQ 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ G +SYG R S IA +GYADG+ LS Sbjct: 246 TMGFKTKIVHIKEVPEGTSISYGRTFITKRKSKIATLPVGYADGFNRLLSNNH------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 +KG P++G+I MD TM D+TD +E+GD + IFG I +++A Sbjct: 299 ----HVLVKGKYAPVIGRICMDQTMIDVTDIEGVELGDDVVIFGNQEGEKITAEEIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ I R + Y Sbjct: 355 NTIPYEVYCGISRRVPRIY 373 >gi|260893600|ref|YP_003239697.1| alanine racemase [Ammonifex degensii KC4] gi|260865741|gb|ACX52847.1| alanine racemase [Ammonifex degensii KC4] Length = 369 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 169/376 (44%), Gaps = 23/376 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++ AL++N + + G + R +VK NAYG G +A L AGV V Sbjct: 4 PVWAEVSREALRHNLRVVKEIVGPSVRVMGIVKANAYGHGLVPVAKILEEAGVDWLGVAR 63 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123 +E ++LR I VL +HP + + + S L ++ + G Sbjct: 64 GQEALELRREGVDHPILVLGYVHPAECPALLAQEVTLTAYSEDILREWAGIAQREGKRLK 123 Query: 124 YALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +VDTG RLG + A + ++ I +H ACAD P QLE+F Sbjct: 124 VHFKVDTGMGRLGFKAEPAGKEAILRLAALPRVEVEGIYTHFACADLPDEKPTRDQLEKF 183 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 L+ + A+S+ ++ H + RPGI LYG + + +T Sbjct: 184 IMLLEELERAGLSIPLRHAANSAALIRFRESHLDMVRPGIMLYGLLPFPSARVNLSPAMT 243 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +AR++ +++ AG VSYG + +R SL+A A GY DGY LS Sbjct: 244 LKARVVQVKRVGAGFPVSYGWTYRTSRPSLLATVAAGYGDGYSRLLSN-----------K 292 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G+ ++G VP++G++ MD + D T+ +E G+ + +FG + ++++A GT Sbjct: 293 GEVLLRGRRVPVVGRVCMDQLIVDATELGEVEPGEEVVLFGRQGEVSLPVEELAEKIGTI 352 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 353 NYEVVCAVSARVPRVY 368 >gi|163749309|ref|ZP_02156558.1| alanine racemase [Shewanella benthica KT99] gi|161331028|gb|EDQ01954.1| alanine racemase [Shewanella benthica KT99] Length = 358 Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 106/370 (28%), Positives = 182/370 (49%), Gaps = 21/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALK+N + ++ +++ AVVK N YG G +A + + F V Sbjct: 3 PFPRAEISCKALKHNLARLRQIAPSSKIMAVVKANGYGHGLLNVAQCIED--ADGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR A++ +L G P + ++ V+ + QL + S Sbjct: 61 LEEAIALRDGGVTAKLILLEGCFRPVDLITLVMNDIETVVHNETQLEMLEQ-ASLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG +RLG + ++ ++ + ++SH ACAD+P + QL +F Sbjct: 120 VWLKLDTGMHRLGFTPEQFEQIYARLQACPQVVKPIKLMSHFACADEPDNPYTQEQLNKF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L+ + G + +LA+S+G L P+ H RPGI+LYG + + K+H +Q + Sbjct: 180 NKLVRNLPG-DTTLANSAGTLYWPDSHKDWVRPGIALYGVSPVTGDLGKNHGLQPAMELI 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R+ AGE V YG + D+ + + AIGY DGYP G Sbjct: 239 SQLIAVREHKAGEPVGYGCYWRAKADTKLGIVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G +VPI+G+++MDM D+ S +GD ++G + ++ VA GT Y+L+ Sbjct: 288 VWVNGRLVPIVGRVSMDMLTVDLGSDSSDSIGDEAILWGSALPVEVVAEHIGTIAYELVT 347 Query: 360 RIGTRYAKFY 369 ++ R A Y Sbjct: 348 KLTPRVA-VY 356 >gi|78042901|ref|YP_359522.1| alanine racemase [Carboxydothermus hydrogenoformans Z-2901] gi|85681910|sp|Q9F8I0|ALR_CARHZ RecName: Full=Alanine racemase gi|77995016|gb|ABB13915.1| alanine racemase [Carboxydothermus hydrogenoformans Z-2901] Length = 368 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 170/378 (44%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +++L +++N+ + L+ A V+K NAYG G ++A AL G + F V Sbjct: 2 RPVWAEVNLENIRHNFREVKRLARQAEAMPVIKANAYGHGAVEVAKALIAEGAKRFAVAI 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHP 123 ++EG+KLR A + +L P + + + NL P + L + +L + Sbjct: 62 LDEGIKLREAGIDAPVLILGYTPPEEVEKLLFYNLTPTLHHRELALAYQERLERLKKTLF 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 Y L++DTG R+G +E K + + +H A AD+ + +Q+ERF Sbjct: 122 YHLKIDTGMGRIGFWYEELEK-IEEVLKLKNLEAEGVYTHFARADEQDLSFSKLQIERFN 180 Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 ++ H K A+S+ I+ P H+ L RPGI LYG + ++ Sbjct: 181 IVLKHLKAKGIEVKYRHAANSAAIMRLPEAHYDLVRPGIMLYGEYPSRDVPRELAHLKPA 240 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T +AR+ ++K AG VSYG ++ +LI +GYADGY LS Sbjct: 241 LTLKARVSQVKKVPAGFTVSYGSTYVTSKATLIVSLPLGYADGYFRRLSNR--------- 291 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G I G I G++ MD M + ++ + GD + G I ++A G Sbjct: 292 --GVVLINGKRWSIAGRVCMDQLMVAVDETERVNPGDEAVLLGKQGEETITAMEMADLVG 349 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++L I R + Y Sbjct: 350 TINYEILTNISYRVPRIY 367 >gi|20808552|ref|NP_623723.1| alanine racemase [Thermoanaerobacter tengcongensis MB4] gi|23813661|sp|Q8R860|ALR2_THETN RecName: Full=Alanine racemase 2 gi|20517179|gb|AAM25327.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4] Length = 388 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 167/379 (44%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++++L ++ +N+ + + G+ + VVK NAYG G +A AL GV V Sbjct: 6 RPTRVEVNLDSIVHNFREIKRVVGDRVKVMGVVKANAYGHGAYHVAKALVENGVDYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 +VEE ++LR Y A + +L Q + ++ + + G Sbjct: 66 TVEEALELRSYGITAPVLILGYTPLSQAGEAVEKDVTFTAFDLKYVKELGEIASRKGKKA 125 Query: 123 PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G + + A + +L I SH A +D+ Q ER Sbjct: 126 KIHVKIDTGMGRIGYTDFDLAEREIEEMSKLEGIELEGIFSHFATSDEKDKDYAREQFER 185 Query: 182 FRTLI----SHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDK--INKSHPMQT 234 F ++ I ++SG + NY + + RPGI+LYG +NK ++ Sbjct: 186 FADMLKRLEKRGVNITLKHIANSGAITDLNYAYLDMVRPGITLYGSYPSNDVNKILDLRP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ +SYG R S IA IGYADG LS Sbjct: 246 AMNFKTKIVYIKEVPENTSISYGRTFITKRPSKIATLPIGYADGLNRLLSNNH------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 + ++G VPI+G++ MD TM D+T+ +EVGD + IFG I DD+A Sbjct: 299 ----EVLVRGKYVPIVGRVCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITADDIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +++ I R + Y Sbjct: 355 RTIPHEVYCGISRRVPRIY 373 >gi|254479071|ref|ZP_05092425.1| alanine racemase [Carboxydibrachium pacificum DSM 12653] gi|214034987|gb|EEB75707.1| alanine racemase [Carboxydibrachium pacificum DSM 12653] Length = 388 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 167/379 (44%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++++L ++ +N+ + + G+ + VVK NAYG G +A AL GV V Sbjct: 6 RPTRVEVNLDSIVHNFREIKRVVGDRVKVMGVVKANAYGHGAYHVAKALVENGVDYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 +VEE ++LR Y A + +L Q + ++ + + G Sbjct: 66 TVEEALELRSYGITAPVLILGYTPLSQAGEAVEKDVTFTAFDLKYVKELGEIASRKGKKA 125 Query: 123 PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G + + A + +L I SH A +D+ Q ER Sbjct: 126 KIHVKIDTGMGRIGYTDFDLAEREIEEMSKLEGIELEGIFSHFATSDEKDKDYAREQFER 185 Query: 182 FRTLI----SHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDK--INKSHPMQT 234 F ++ I ++SG + NY + + RPGI+LYG +NK ++ Sbjct: 186 FADMLKRLEKRGVNITLKHIANSGAITDLNYAYLDMVRPGITLYGSYPSDDVNKILDLRP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ +SYG R S IA IGYADG LS Sbjct: 246 AMNFKTKIVYIKEVPENTSISYGRTFITKRPSKIATLPIGYADGLNRLLSNNH------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 + ++G VPI+G++ MD TM D+T+ +EVGD + IFG I DD+A Sbjct: 299 ----EVLVRGKYVPIVGRVCMDQTMIDVTEVEGVEVGDEVVIFGEQEGKRITADDIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +++ I R + Y Sbjct: 355 RTIPHEVYCGISRRVPRIY 373 >gi|296132181|ref|YP_003639428.1| alanine racemase [Thermincola sp. JR] gi|296030759|gb|ADG81527.1| alanine racemase [Thermincola potens JR] Length = 391 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 149/380 (39%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDL A+ +N + ++ AR AVVK NAYG G ++ GV V Sbjct: 22 RPAWAEIDLGAIAHNLREIRRITQPQARIMAVVKANAYGHGAVPVSQVALQNGVSYLGVA 81 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 ++E ++LR A I +L Q + N+ I ++ F Sbjct: 82 MLDEALELRRAGIDAPILILGYTPKEQAEEAVRHNVTQTIYTLEMARFVSEVGEKLRQRA 141 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG RLG E ++ + I +H A +D Q + Sbjct: 142 KVHIKIDTGMTRLGFLPGAETVEKIKEIAALPGLSVEGIFTHFAVSDIRDKAFTRQQFKL 201 Query: 182 FRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKS---HPMQ 233 F + + +G++ + ++ + P H + R GISLYG ++ Sbjct: 202 FTDMCAVLEREGVKIPIKHAANTGAIIDMPETHLDMVRLGISLYGLYPSPEVDRTKVSLK 261 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ +A I +++ G VSYG ++IA IGYADGY LS Sbjct: 262 PALSLKAGISHLKEVPRGVTVSYGRTYTTQEKTMIATIPIGYADGYSRLLS--------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 I+G P+ G I MD M D+ + D + + G I D++A Sbjct: 313 --SKAHVLIRGTRAPVAGVICMDQFMVDVGHIPDVAATDEVVLIGRQGDDCISADELAQL 370 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ + R + Y Sbjct: 371 LGTINYEIVCMLSERIPRVY 390 >gi|168185661|ref|ZP_02620296.1| alanine racemase [Clostridium botulinum C str. Eklund] gi|169296525|gb|EDS78658.1| alanine racemase [Clostridium botulinum C str. Eklund] Length = 387 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 110/385 (28%), Positives = 168/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +I+L L +N + LS +VK +AYG G I P L G Sbjct: 1 MFKHLRPVWAEINLDNLASNMKEIKKLSNTKEIIGIVKADAYGHGALDIVPTLIENGATG 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V V EGV+LR + I VL P ++ ++ + S+ SK Sbjct: 61 LAVAVVSEGVELRRGGIECPIMVLGFTPPSLIDMLLKHDIEQTVFSLDYAKELSKAAEKM 120 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E++ ++ I SH + AD+ + +S Sbjct: 121 HKIAKIHIAVDTGMGRIGFLPNEESIQDVKKISMLPNIKIKGIFSHFSTADEENKEYSSY 180 Query: 178 QLERFRTLI----SHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 QL +F IE +++S+ I+ P F+ RPGI LYG Sbjct: 181 QLNQFNKFYEGLKKENVNIETRHISNSAAIMDLPETKFEGVRPGIILYGYYPSNEVDKSK 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ + I+ I+K +GE +SYG + K R+S IA +GYADGY L G Sbjct: 241 LKLKPVMQLKTNIVHIKKIPSGEYISYGRKFKTDRESFIATLPVGYADGYTRLLFG---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLD 344 K I G + P++G+I MD M DITD I+VG+ + + G I D Sbjct: 297 -------KAKVIINGQLAPVVGRICMDQCMVDITDIKGDIKVGEEVILIGQKNGIKIDAD 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A GT NY+++ I R + Y Sbjct: 350 DIAEMLGTINYEIICMISKRVPRVY 374 >gi|301059502|ref|ZP_07200415.1| alanine racemase [delta proteobacterium NaphS2] gi|300446397|gb|EFK10249.1| alanine racemase [delta proteobacterium NaphS2] Length = 372 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 168/374 (44%), Gaps = 20/374 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R ++L A+++N + G N + AVVK + YG G +++ ++G V Sbjct: 9 RSTRAVVNLGAVEHNIAAAREKIGKNRKLMAVVKADGYGHGALEVSTKALSSGADCLGVA 68 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 EE LR A I L I P + + D L + S+ + + V Sbjct: 69 FPEEAEPLRKAGIDAPILALGLIQPDEAYKVIDLGLEQTVCSLELAEALNGAAGNASVKI 128 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG R+G+ + L++ K L I SH ACAD+ + + Q+ F Sbjct: 129 DVHIKVDTGMGRIGVLPHDLLEYCRKIRQLKHLNLKGIFSHFACADENDADFTNRQIRIF 188 Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 + + LA+S+GIL P H+ L RPGI +YG +S + Sbjct: 189 DQAVREMAASGISVPQKHLANSAGILAHPASHYDLVRPGIMIYGLYPSPEIARSVSLIPA 248 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T +++I +++ +SYG +R ++IA +GYADGY LS Sbjct: 249 MTLKSKITQVKRVSRETPISYGRTYYTSRSAMIATLPVGYADGYNRRLSNRSF------- 301 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 I+G P++G++ MDM MFD+T ++ GD +FG +DD+A T NY Sbjct: 302 ----AIIRGERAPLVGRVCMDMCMFDVTAIKNVRPGDEAILFGESPTIDDIAKGLDTINY 357 Query: 356 DLLVRIGTRYAKFY 369 +++ +G R + Y Sbjct: 358 EVVCAVGKRVPRIY 371 >gi|302392182|ref|YP_003828002.1| alanine racemase [Acetohalobium arabaticum DSM 5501] gi|302204259|gb|ADL12937.1| alanine racemase [Acetohalobium arabaticum DSM 5501] Length = 375 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 24/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N + ++++L ++ N + A S + AVVK +AYG G +A A AG V Sbjct: 6 NRPVWVEVNLENIRFNLKQIRARVSADTLVMAVVKADAYGHGAVPVARAAVEAGADRLAV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 EEGV+LR + I +L + P Q ++ LIP +S + + Sbjct: 66 GLPEEGVQLRNAGFEVPIQILGEVLPEQIPLLAKYGLIPTVSKLETAVELERINAQLESR 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG RLG+ E + F + +L +++H A AD+ Q ++ Sbjct: 126 QKIHLKVDTGMGRLGVKPDEVVGFAQKLSSFPHLELEGLLTHFATADEADKEYTRQQWQK 185 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQT 234 F I + A+S+ I+ P L R GI LYG S +++ Sbjct: 186 FNYAIECLEAAGIRIPVKHCANSAAIIDLPEMELDLVRAGIMLYGLRPSDEVGDSLQLKS 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ +ARI+ +++ G +SYG + IA +GYADGY LS Sbjct: 246 VLNWKARIVYLKEVDKGCGISYGATYTTADKAEIATIPLGYADGYFRALSN--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 G I G PI G++ MD M D+T+ + VGD + + G ++ ++A Sbjct: 297 --KGDVLINGRRAPIRGRVCMDQFMVDVTEIPGVSVGDEVILIGKQDDKEVTAMELADLV 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY+++ +I R + Y Sbjct: 355 GTINYEIISKITKRVPRIY 373 >gi|258516878|ref|YP_003193100.1| alanine racemase [Desulfotomaculum acetoxidans DSM 771] gi|257780583|gb|ACV64477.1| alanine racemase [Desulfotomaculum acetoxidans DSM 771] Length = 373 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 165/378 (43%), Gaps = 26/378 (6%) Query: 7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +I+L+A+ +N + ++ A+ AVVK +AYG G + A + GV V+ V Sbjct: 6 TWAEINLSAIAHNIQELRRIAAPGAQLMAVVKADAYGHGAVETARIALDNGVVILAVSRV 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124 EGV LR + VL + PG+ +L + ++ Q S + G+ Sbjct: 66 SEGVALREAGIDCPVLVLGYLSPGEVLFSLKNDLSHTVFNMQQAEILSDIATKAGIKAKV 125 Query: 125 ALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++++TG RLG +A ++ ++ I +H A +D QL RF+ Sbjct: 126 HIKIETGMGRLGFEACQAVVEQVIAVTRLSHLKVDGIFTHFAVSDIIDKSYTRQQLFRFQ 185 Query: 184 TLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTV 235 ++ + +S+ I+ P+ H + R GI++YG Q Sbjct: 186 EVLRELHRKGVDIQLKHAANSAAIIDMPDTHLNMVRAGIAMYGLYPSEGVDKSRIVLQPA 245 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ + ++ I++ AG VSYG R +LIA +GYADGY LS Sbjct: 246 MSFKTQVGHIKRVPAGYPVSYGCTYITRRPTLIATLPVGYADGYSRLLSSR--------- 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + I G P++G++ MD M D+ +GD + ++G + +++VA G Sbjct: 297 --AEVLIHGQRAPVVGRVCMDQCMIDVGHINDPLIGDEVVLWGQQGESSLPVEEVAEKMG 354 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+L+ + R + Y Sbjct: 355 TINYELVCMVNVRVPRVY 372 >gi|170758199|ref|YP_001785612.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree] gi|169405188|gb|ACA53599.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree] Length = 404 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 28/388 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+L L +N + ++ + +VVK +AYG G +IA L G V Sbjct: 5 SRPAWIEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH--------PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 + E ++LR A I +L + I +L +SS SK Sbjct: 65 VLSEALELRNNGITAPIIILGYTPLRYDEKTICNNAETIIKNDLEVSVSSYKYAEQLSKK 124 Query: 116 MSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G + +DTG RLG +E L+ + + SH + AD+ + Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTADEKNKD 184 Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 + Q ++F + +A+S+ ++ P H RPGI+ YG Sbjct: 185 YTNEQFKKFLDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPSSEV 244 Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K ++ ++T + I+L++ +G+ +SYG + + R+S IAV IGYADGY LS Sbjct: 245 NHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERELSN 304 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341 ++ + + + G PI+G+ITMDM M D+TD ++VGD + + G I Sbjct: 305 ENNVY------KAQVIVNGRRAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECNDERI 358 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++D+A T Y++ RI R ++Y Sbjct: 359 SVEDIADLLNTIPYEVTSRISKRIPRYY 386 >gi|310829658|ref|YP_003962015.1| alanine racemase [Eubacterium limosum KIST612] gi|308741392|gb|ADO39052.1| alanine racemase [Eubacterium limosum KIST612] Length = 399 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 98/378 (25%), Positives = 166/378 (43%), Gaps = 22/378 (5%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +I L L N + + AR VVK +AYG G +A L + GV Sbjct: 12 AHRPTWAEIKLENLLFNLEQIKKAAGPEARIMGVVKADAYGHG-VDVAELLQDEGVPCLG 70 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCG 119 V ++E + LR + G + + + ++ G Sbjct: 71 VAFLDEAIALRQKGIDRCDLFILGYTGADQIPELVEWDVTPGVYQLEFAQALSDYCVANG 130 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 HP ++VDTG R+G EA + + ++ + +H A AD+ +QL Sbjct: 131 SVHPVHIKVDTGMGRIGFRWDEAAEAVLKIADMPGIRIEGLYTHFATADEVDKDFTHLQL 190 Query: 180 ERFRTLISH--YKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 R+ ++ KG+E L +S+ I+ F + RPGI LYG + Sbjct: 191 TRYAQVVKALSDKGVEIPLKHVENSAAIIDFDKTVFNMVRPGIILYGHYPSDEVKKEKLG 250 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V++ + RI+ I+ AG+ VSYG + D +IA +GYADGY LSG Sbjct: 251 LKPVMSFKTRIVHIKTIHAGDTVSYGRKFTAEGDRVIATLPVGYADGYSRMLSGK----- 305 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G + + G+ P++G I MD M DIT + + D +++FG ++ ++++A G Sbjct: 306 -----GAEVLVNGHRAPVVGNICMDQCMVDITGLEGVSLYDEVELFGENLPVEELAEKLG 360 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+LL + R + Y Sbjct: 361 TISYELLCMVNKRVPRVY 378 >gi|323706388|ref|ZP_08117952.1| alanine racemase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534282|gb|EGB24069.1| alanine racemase [Thermoanaerobacterium xylanolyticum LX-11] Length = 388 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 165/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++L + +N+ + ++ NA AVVK NAYG G +++ L N GV V Sbjct: 6 RPTWAEVNLDNIIHNYKEIRKITDKNAGIMAVVKANAYGHGSYEVSKELINCGVDYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 +++E ++LR I +L +I ++ + + +K+ G Sbjct: 66 TIDEALELREQGISKPILILGYTPAKFADVIVKHDITQTAFELSYVKEVAKVAQKLGKDA 125 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G + + +A + N + I SH + +D+ QLE Sbjct: 126 KIHVKIDTGMGRIGYNDMNKAYEEILTMSNLAGINIEGIFSHFSSSDEKDKEYTLRQLEI 185 Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234 F LI K +A+S+ IL P H + RPGI LYG ++NK + Sbjct: 186 FLNLIERLKKSGLYIPIRHIANSAAILDMPETHLDMVRPGIILYGSFPSSEVNKKIDLLP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ++++ ++ GE +SY + R S IA IGYADG LS + Sbjct: 246 TISLRSKVVYVKDVGEGEYISYNRTYRTNRKSRIATLPIGYADGLNRLLSNNHN------ 299 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 I G PI+GKI MD M D+T+ ++ GD I G I D++A Sbjct: 300 -----VIINGKYAPIVGKICMDQCMVDVTEIEDVKEGDVATIMGEADGKFISADEIANKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ I R + Y Sbjct: 355 KTISYEVYCGISRRVPRIY 373 >gi|148378278|ref|YP_001252819.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|153930927|ref|YP_001382679.1| alanine racemase [Clostridium botulinum A str. ATCC 19397] gi|153935439|ref|YP_001386230.1| alanine racemase [Clostridium botulinum A str. Hall] gi|148287762|emb|CAL81828.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|152926971|gb|ABS32471.1| alanine racemase [Clostridium botulinum A str. ATCC 19397] gi|152931353|gb|ABS36852.1| alanine racemase [Clostridium botulinum A str. Hall] Length = 404 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 28/388 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+L L +N + ++ + +VVK +AYG G +IA L G V Sbjct: 5 SRPAWIEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH--------PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 + E ++LR A I +L + I +L +SS SK Sbjct: 65 VLSEALELRNSGITAPIIILGYTPLRYDERTICNNAETIIKNDLEVSVSSYKYAEQLSKK 124 Query: 116 MSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G + +DTG RLG +E L+ + + SH + AD+ + Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTADEKNKE 184 Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 + Q ++F + +A+S+ ++ P H RPGI+ YG Sbjct: 185 YTNEQFKKFLDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPSSEV 244 Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K ++ ++T + I+L++ +G+ +SYG + + R+S IAV IGYADGY LS Sbjct: 245 NHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERELSN 304 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341 ++ + + + G PI+G+ITMDM M D+TD ++VGD + + G I Sbjct: 305 ENNVY------KAQVIVNGRRAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECNDERI 358 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++D+A T Y++ RI R ++Y Sbjct: 359 SVEDIANLLNTIPYEVTSRISKRIPRYY 386 >gi|183597310|ref|ZP_02958803.1| hypothetical protein PROSTU_00561 [Providencia stuartii ATCC 25827] gi|188023331|gb|EDU61371.1| hypothetical protein PROSTU_00561 [Providencia stuartii ATCC 25827] Length = 360 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 109/364 (29%), Positives = 186/364 (51%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ ++R A+VK NAYG G +++ L + V F V ++E + Sbjct: 8 INRRALRHNLQRVRELAPHSRLIAIVKANAYGHGLTEVSTTLEDL-VDGFGVARLKEALA 66 Query: 71 LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR A I +L G ++ + + VI V QL +++D Sbjct: 67 LRERGITAPIVLLEGFFEHSDLPLLVEHQIDTVIHCVEQLAMLEATELAN-PIKVWMKLD 125 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 TG +RLG+ Q+A F K + IISH AD+P + Q+ F+ +++ Sbjct: 126 TGMHRLGVLPQDAEAFYQRLQACKNVKHPINIISHFCQADEPELPTTANQIHCFKQFVAN 185 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILI 245 G E S+A+S+GILL P+ H+ RPGI +YG + + + +Q+V+T ++ +I + Sbjct: 186 KAG-EKSIAASAGILLWPDAHYDWVRPGIIMYGASPQEGTSAEHFGLQSVMTLKSTLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AG+ V YG RD+ + V AIGY DGYP + G + G Sbjct: 245 REHAAGQCVGYGATWCSQRDTRLGVVAIGYGDGYPRSA-----------PSGTPVLVNGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G+++MDM D+ + + +VGD + ++G + ++++A +G NY+LL ++ +R Sbjct: 294 KVPIVGRVSMDMITVDLGPNANDKVGDEVILWGKSLPVEEIAAQTGIINYELLTKLTSRV 353 Query: 366 AKFY 369 Y Sbjct: 354 VMEY 357 >gi|297545238|ref|YP_003677540.1| alanine racemase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843013|gb|ADH61529.1| alanine racemase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 385 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 157/379 (41%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +I L + +N + G + VVK NAYG G +A L GV V Sbjct: 6 RPTRAEIYLDNIAHNLSEVKRWVGKKVKIMGVVKANAYGHGACHVAKVLVENGVCYLGVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++EE ++LR I V Q + + N+ + + + K+ G Sbjct: 66 TIEEALELRECGINIPILVFGYTPLTQAEELIVHNITQTVFDINYVEDLEKIALNVGKKA 125 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G L+ A + ++ I SH A +D+ Q + Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDKSYAEQQFDM 185 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQT 234 F+ L+ K +A+S I+ + + RPGI LYG P ++ Sbjct: 186 FKKLLERLKEKRINIPLKHMANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVKRPLDLRQ 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ G +SYG R S IA +GYADG+ LS Sbjct: 246 TMGFKTKIVYIKEVPEGTSISYGKTFITKRKSKIATLPVGYADGFNRLLSNNY------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 +KG ++G+I MD TM D+TD +EVGD + IFG I +++A Sbjct: 299 ----HVLVKGKYAAVVGRICMDQTMIDVTDIEGVEVGDDVIIFGNQEGEKITAEEIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ I +R + Y Sbjct: 355 NTIPYEVYCGISSRVPRIY 373 >gi|147676995|ref|YP_001211210.1| alanine racemase [Pelotomaculum thermopropionicum SI] gi|254802371|sp|A5D4I1|ALR_PELTS RecName: Full=Alanine racemase gi|146273092|dbj|BAF58841.1| alanine racemase [Pelotomaculum thermopropionicum SI] Length = 374 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 158/379 (41%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I+L A+ +N + ++ A+ AVVK NAYG G E+++ G + V Sbjct: 5 PVWAEINLRAIAHNIREIRRVTEPGAKVMAVVKANAYGHGAEEVSQTALAGGAEWLGVAR 64 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123 V EGV LR +A + VL P Q + NL + + L G Sbjct: 65 VAEGVSLRQAGIEAPVLVLGYTTPEQAADVIRHNLSQTVYTRNAALFLAEAAAREGKRAR 124 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +VDTG R+G A+ ++ I +H A AD Q ++F Sbjct: 125 VHFKVDTGMGRIGWLAGPGAVREILELARLPQLEVEGIFTHFAAADAADKRYTLEQFQKF 184 Query: 183 RTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234 +I G+E L +S+ I+ P H + R GI LYG + Sbjct: 185 IEMIDELQKNGLEFPLRHAANSAAIMELPGTHLDMVRAGIILYGLYPSDEVDRRRIDLRP 244 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ +AR+ +++ AG VSYG R +IA +GYADGY LS Sbjct: 245 AMSLKARVAHVKEVPAGFKVSYGCTYTTGRPGVIATLPLGYADGYSRLLS---------- 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G+ I G P++G++ MD M D++ ++ GD + G I D+VA Sbjct: 295 -SKGEALIHGRRAPVVGRVCMDQVMVDVSGIPGVKAGDEAVLIGRQGGETISADEVAAKL 353 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++ + R + Y Sbjct: 354 GTINYEVTCMVSGRVPRVY 372 >gi|323140360|ref|ZP_08075291.1| alanine racemase [Phascolarctobacterium sp. YIT 12067] gi|322415164|gb|EFY05952.1| alanine racemase [Phascolarctobacterium sp. YIT 12067] Length = 372 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 21/379 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 MH +I+L A+ +N A L + AVVK +AYG G ++A G Sbjct: 1 MHIQRGAWAEINLDAVAHNVQMAKANLKPTTKLCAVVKADAYGHGAVRVAQEAARNGADF 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSC 118 F V ++EGVKLR + I VL + P +I ++ + + + Sbjct: 61 FAVALLQEGVKLREAGIETPILVLGSMLPEVAEICVRYDISHAVFDEERLYALNAAALKL 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++DTG +R+G+ +++A F + + + + SH A AD + Q Sbjct: 121 HTKAKIHIKIDTGMHRIGVHVRDAGRFAKLAASLPGIYIEGVFSHFATADADDKQYAAYQ 180 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231 ERF+ + +A+S+ + Y + R GI+LYG I+ Sbjct: 181 FERFQEALRLIEAEGVHIPIRHIANSAALTELQEYQLDMVRQGITLYGLHPAHMIDCYKD 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + V+T + ++ ++ GE + YG LTR S+IA IGYADG LS Sbjct: 241 FEPVMTVKTQVAFVKTLPPGETIGYGRTYTLTRPSVIATVPIGYADGVSRRLSNR----- 295 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALAS 350 G + G PI+G++ MD TM D+TD +++G + +F G ++ ++ VA + Sbjct: 296 ------GYMLVNGKKAPIIGRVCMDQTMLDVTDIPDVKLGSEVIVFGGRELPMELVAEWA 349 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y+++ + R + Y Sbjct: 350 DTICYEIVCDVSPRVPREY 368 >gi|289579033|ref|YP_003477660.1| alanine racemase [Thermoanaerobacter italicus Ab9] gi|289528746|gb|ADD03098.1| alanine racemase [Thermoanaerobacter italicus Ab9] Length = 385 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 157/379 (41%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +I L + +N + G + VVK NAYG G +A L GV V Sbjct: 6 RPTRAEIYLDNIVHNLSEVKRWVGKKVKIMGVVKANAYGHGACHVAKVLVENGVCYLGVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++EE ++LR I V Q + + N+ + + + K+ G Sbjct: 66 TIEEALELRECGINIPILVFGYTPLTQAEELIVHNITQTVFDINYVEDLEKIALKVGKKA 125 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G L+ A + ++ I SH A +D+ Q + Sbjct: 126 KVHVKIDTGMGRIGYTDLKVAEKEIEKMMEMEGVEVEGIFSHFATSDEKDKSYAEQQFDM 185 Query: 182 FRTLI----SHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKINKSHPMQ--T 234 F+ L+ I ++SG ++ Y + + RPGI LYG P+ Sbjct: 186 FKKLLERLKEKGINIPLKHMANSGAIIDLKYTYLDMVRPGIVLYGSYPSEEVKRPLDLKQ 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I+ I++ G +SYG R S IA +GYADG+ LS Sbjct: 246 TMGFKTKIVYIKEVPEGTSISYGKTFITKRKSKIATLPVGYADGFNRLLSNNY------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 +KG ++G+I MD TM D+TD +EVGD + IFG I +++A Sbjct: 299 ----HVLVKGKYAAVVGRICMDQTMIDVTDIEGVEVGDDVIIFGNQEGEKITAEEIAKKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ I +R + Y Sbjct: 355 NTIPYEVYCGISSRVPRIY 373 >gi|326792091|ref|YP_004309912.1| alanine racemase [Clostridium lentocellum DSM 5427] gi|326542855|gb|ADZ84714.1| alanine racemase [Clostridium lentocellum DSM 5427] Length = 377 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSNEF-LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M S+ + +++L A+++N+ + N A+VK + YG G +++A L GV Sbjct: 1 MESHRPRVVAEVNLGAIEHNYKQIRQHIPNHTEIMAIVKADGYGHGAKEVANFLQEQGVN 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 F V V EG +LR + I VL K + + +L + S S Sbjct: 61 RFAVAIVAEGEELRSSGITSPILVLGYTPRADIKTLIENDLTQTVFSYEMAKTISDEAGR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + L+VDTG R+G ++++ L I +H + AD+ + Sbjct: 121 LGKTVNIHLKVDTGMGRIGFLSSPKSIEEILMITKLPHINLEGIFTHFSTADEEDTSYTK 180 Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKI---NK 228 Q F + + L +S+ I+ H L RPGI LYG K Sbjct: 181 EQWSIFEGFLKELSEVGLELPIIHAANSAAIMCHEYTHLNLVRPGIILYGYYPSPYLGGK 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ +T + +++ +++ G+ V YG + + + IA +GYADGY L Sbjct: 241 VLDLEPAMTLKTQVVHVKELPEGQYVGYGRKFYTHQKTKIATIPVGYADGYSRNLGN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G+ I+G PI+G I MD M D+T + V D + +FG I ++ Sbjct: 298 --------KGRVLIRGQYAPIIGNICMDQFMVDVTHIKGVSVEDEVVLFGKQQDAVIPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A + GT NY+++ IG R + Y Sbjct: 350 EIAQSLGTINYEIVCMIGKRVPRIY 374 >gi|59710909|ref|YP_203685.1| alanine racemase [Vibrio fischeri ES114] gi|59479010|gb|AAW84797.1| alanine racemase 1, PLP-binding, biosynthetic [Vibrio fischeri ES114] Length = 360 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 110/374 (29%), Positives = 172/374 (45%), Gaps = 18/374 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + +ID++AL +N + + +++ AVVK N YG G IA G F Sbjct: 1 MSYMKAATAQIDMSALAHNLQKIKQQAPSSKLLAVVKANGYGHGLLNIAKGAQ--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR I +L G + + I TN I + + Sbjct: 59 GVARIEEALQLRAGGIVKPILLLEGFYSAGDLPILVTNNIQTAIHCKEQLEALESTDLEF 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VD+G +RLG+ +E ++ K + + +SH CAD+ S + Q+ Sbjct: 119 PVVAWLKVDSGMHRLGIRPEEFQEYVDRLHACKNVAKPLRYMSHFGCADELDSSTTTEQI 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236 + F +L +G E SLA+S+G+L P+ RPGI +YG + +S + Sbjct: 179 DTFMSLTKGCQG-ERSLAASAGLLAWPDSRLDWVRPGIIMYGVSPFAEQSAQELGYLPTM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +I +R AGE V YG RD+ I V AIGY DGYP T Sbjct: 238 TLTSHLIAVRDVKAGESVGYGAIWTSERDTKIGVIAIGYGDGYPRTAPN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G VPI G+++MDM D+ +VGD ++G D+ ++VA GT Y+ Sbjct: 287 GTPVLVNGRKVPIAGRVSMDMLTVDLGPDAQDKVGDEAILWGRDLPSEEVAEHIGTIAYE 346 Query: 357 LLVRIGTRYAKFYT 370 L+ ++ +R YT Sbjct: 347 LVTKLTSRVQMQYT 360 >gi|45359075|ref|NP_988632.1| alanine racemase [Methanococcus maripaludis S2] gi|45047950|emb|CAF31068.1| Alanine racemase [Methanococcus maripaludis S2] Length = 373 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 170/384 (44%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S+ + +IDL+A+KNN + ++ ++ AVVK NAYG G +++ G Sbjct: 1 MVSH-PIWAEIDLSAIKNNIKEIRRITNPKSQVMAVVKANAYGHGSVEVSKICLENGADR 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 V E ++LR I V + + + + ++ + S+ K+ Sbjct: 60 LAVARSTEALELRDAGITCPILVFGYVTEEEILKMVENDITLTVYSLEIANSIQKIAEKL 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G ++VDTG +RLG ++ +++ + ++ I +H A AD+ ++ Sbjct: 120 GKHSKIHIKVDTGMSRLGFLPEKSSVETIKKIRELENIEVEGIYTHFADADNSDKTYTTM 179 Query: 178 QLERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKI---NKS 229 Q +F + + GI+ + +S+ I+ P H + RPGI LYG + Sbjct: 180 QFSKFTSFLHDLEENGIDIPIKHASNSAAIIDHPETHLNMVRPGIILYGLYPSELVHKER 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 +Q ++ + + ++ +SYG + + S IA IGYADG+ L Sbjct: 240 INLQPAMSLKVLVTHVKDVPENTKISYGCTFETKKQSKIASLPIGYADGFTRMLRN---- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G I G VP++G+I MD M D+T ++ VGD + +FG D I +++ Sbjct: 296 --------GNVLIHGLRVPVVGRICMDQCMIDVTSIENVNVGDVVTVFGKDGTEKISIEE 347 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 GT NY+L+ + R + Y Sbjct: 348 FGNKLGTINYELVCMVSARVPRIY 371 >gi|229525066|ref|ZP_04414471.1| alanine racemase biosynthetic [Vibrio cholerae bv. albensis VL426] gi|229338647|gb|EEO03664.1| alanine racemase biosynthetic [Vibrio cholerae bv. albensis VL426] Length = 375 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 177/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + +SH CAD+ Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVTRLHQCANVAKPLRYMSHFGCADELDKSTTVEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ +R Y+ Sbjct: 357 ELVTKLTSRVEMSYS 371 >gi|170757299|ref|YP_001779928.1| alanine racemase [Clostridium botulinum B1 str. Okra] gi|169122511|gb|ACA46347.1| alanine racemase [Clostridium botulinum B1 str. Okra] Length = 404 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 28/388 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+L L +N + ++ + +VVK +AYG G +IA L G V Sbjct: 5 SRPAWIEINLDNLIHNMKEIRRVARSKEIISVVKADAYGHGALEIASLLLENGANRLAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH--------PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 + E ++LR A I +L + I +L +SS SK Sbjct: 65 VLSEALELRNSGITAPIIILGYTPLRYDERTICNNAETIIKNDLEVSVSSYKYAEQLSKK 124 Query: 116 MSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G + +DTG RLG +E L+ + + SH + D+ + Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTVDEKNKD 184 Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 + Q ++F + +A+S+ ++ P H RPGI+ YG Sbjct: 185 YTNEQFKKFLDFYYKLRDKNVKVNIKHIANSAALIDLPYTHLDAVRPGIAQYGYYPSSEV 244 Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K ++ ++T + I+L++ +G+ +SYG + + R+S IAV IGYADGY LS Sbjct: 245 NHKDINLRPIMTLKTNIVLVKDIKSGQSISYGRKFRTIRNSKIAVLPIGYADGYERELSN 304 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341 ++ + + + G PI+G+ITMDM M D+TD ++VGD + + G I Sbjct: 305 ENNVY------KAQVIVNGRRAPIVGRITMDMCMIDVTDIGDVKVGDEVILIGECNDERI 358 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++D+A T Y++ RI R ++Y Sbjct: 359 SVEDIADLLNTIPYEVTSRISKRIPRYY 386 >gi|304316039|ref|YP_003851184.1| alanine racemase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777541|gb|ADL68100.1| alanine racemase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 388 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 163/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++L + +N+ + ++ A AVVK NAYG G +I+ L GV V Sbjct: 6 RPTWAEVNLNNIIHNYKEIRKITDKKAGIMAVVKANAYGHGSYEISKELIKCGVDYLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 +++E ++LR + I VL +I ++ + + SK G Sbjct: 66 TIDEALELREHGISKPILVLGYTPSKFADVIVKYDITQTAFELGYVKEISKEAIKQGKDA 125 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G + + +A + + K + I SH + +D+ Q + Sbjct: 126 KIHVKIDTGMGRIGYNDMNKAYEEIVAMTSLKGIYIEGIFSHFSSSDERDKEYTMRQFKI 185 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234 F L +A+S+ IL P H + RPGI LYG +++K ++ Sbjct: 186 FNDLTDRLKRSGIDIPIRHIANSAAILDLPETHLDMVRPGIILYGSYPSEEVDKKISLKC 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ++I+ I+ GE +SY K +R S IA IGYADG LS S Sbjct: 246 TISLRSKIVYIKDVPEGEYISYNRTYKTSRKSRIATLPIGYADGLNRLLSNNHS------ 299 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 IKG PI+GKI MD M D+T ++ GD I G + D++A Sbjct: 300 -----VIIKGKYAPIVGKICMDQCMVDVTSIEGVKEGDVATIMGESDGKIVSADEIANKL 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ I R + Y Sbjct: 355 KTISYEVYCGISRRVPRIY 373 >gi|261254033|ref|ZP_05946606.1| alanine racemase biosynthetic [Vibrio orientalis CIP 102891] gi|260937424|gb|EEX93413.1| alanine racemase biosynthetic [Vibrio orientalis CIP 102891] Length = 358 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 174/364 (47%), Gaps = 18/364 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L AL++N + + N++ AVVK N+YG G IA G F V +EE ++ Sbjct: 8 INLEALQHNLELIKQQAPNSKVMAVVKANSYGHGLRHIAKHAQ--GADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + + TN I + + + L++D+ Sbjct: 66 LRACGVVKPILLLEGFYSQGDLPVLVTNNIQTVVHCEEQLQALEQAELETPVVVWLKIDS 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++ +F + + + +SH CAD+ + Q E F +L Sbjct: 126 GMHRLGVRPEQYSEFVTRLKACRNVAKPLRYMSHFGCADELDKSTTNQQTELFLSLTEGC 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIR 246 +G E SLA+S+G+L P+ + RPGI +YG + ++S Q V+T ++ +I +R Sbjct: 186 EG-ERSLAASAGLLAWPDSQLEWVRPGIIMYGVSPFNDRSAQELGYQPVMTLKSHLIAVR 244 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE V YGG RD+ + V AIGY DGYP T G + G Sbjct: 245 DVKAGESVGYGGMWTSQRDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNGRK 293 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 PI G+++MDM D+ S +VGD ++G + ++VA GT Y+L+ ++ +R Sbjct: 294 APIAGRVSMDMLTVDLGPDASDKVGDEAILWGNQLPAEEVASHIGTIAYELVTKLTSRVD 353 Query: 367 KFYT 370 Y+ Sbjct: 354 MEYS 357 >gi|150399575|ref|YP_001323342.1| alanine racemase [Methanococcus vannielii SB] gi|150012278|gb|ABR54730.1| alanine racemase [Methanococcus vannielii SB] Length = 380 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 165/391 (42%), Gaps = 35/391 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S+ + +IDL A+KNN + ++ +++ AVVK NAYG G +I+ + G Sbjct: 1 MISH-PIWAEIDLNAVKNNIKEIRRITNSDSQIMAVVKANAYGHGAVEISKVVLKNGADR 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--- 116 V +E ++LR + I V + + ++I + S+ K+ Sbjct: 60 LAVARSKEAIELRNAGFKCPILVFGYNTIEEILELIKNDVILTVYSIEIAKDIQKIAKDI 119 Query: 117 -----SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDP 170 L++DTG NRLG + ++ ++ I +H A AD+ Sbjct: 120 QKIAKDIQKIAKVHLKIDTGMNRLGFIPDKKTINEILKISEFLNIEIEGIYTHFADADNS 179 Query: 171 SSHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225 Q +F + S +++S+ I+ P H + RPGI LYG Sbjct: 180 DKTYTKKQFSKFMEFLTDLEDSGINIPIKHVSNSAAIIDHPETHLNMVRPGIILYGLYPS 239 Query: 226 I---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282 ++ V++ + I ++ G +SYG + S IA +GYADG+ Sbjct: 240 ELVQKDKINLEPVMSLKCLITHVKDVPRGTKISYGCTYITKKKSKIASIPLGYADGFTRM 299 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340 L GK + G PI+G+I MD M D+++ +++GD + +FG Sbjct: 300 LKN------------GKVLVGGKRAPIVGRICMDQCMADVSNIDDVKIGDTVLVFGKHEK 347 Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +++++ T NY+L+ I R + Y Sbjct: 348 YTVPVEEISNELKTINYELVCMISNRVPRVY 378 >gi|312793010|ref|YP_004025933.1| alanine racemase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180150|gb|ADQ40320.1| alanine racemase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 390 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 161/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL L N ++ R AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWAEIDLDNLVYNLENIKKKILPQTRIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + + + + Q + S+ G Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKIGKKA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLE 180 ++VDTG R+G E++ N +L I SH + ADDP H Q Sbjct: 128 KIHIKVDTGMGRIGFLCCNESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDHFTHEQFM 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPSSSLKEHLSIK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGRQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 357 IGTINYEVVCSFSKRIPRVY 376 >gi|331268600|ref|YP_004395092.1| alanine racemase [Clostridium botulinum BKT015925] gi|329125150|gb|AEB75095.1| alanine racemase [Clostridium botulinum BKT015925] Length = 387 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 104/385 (27%), Positives = 165/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +I+L L N + +S + +VK +AYG G +AP L G Sbjct: 1 MFKHLRPVWAEINLDNLAFNVKEIKKISSSKEIIGIVKADAYGHGALDVAPTLIENGATG 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V + EGV+LR + I VL P + ++ + S+ S + Sbjct: 61 LAVAVINEGVELRRGGIECPIMVLGFTAPTLIDTLLRHDIEQTVFSLEYAKQLSGVAEKM 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G E++ N ++ I +H + AD+ + Sbjct: 121 HKKIKIHIAVDTGMGRIGFLPNKESVQDVKKISNLPNVEIKGIFTHFSTADESNKEYTYY 180 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 QL++F K +A+S+ I+ F+ RPGI LYG Sbjct: 181 QLKKFNEFYDELKKENINIQTRHIANSAAIMELSETQFEGVRPGIILYGYYPSNQVDKSK 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ + I+ I+K +G+ +SYG + K R+S+IA +GYADGY L Sbjct: 241 LKLKPVMELKTNIVHIKKISSGKYISYGRKFKTERESIIATLPVGYADGYTRLLFN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLD 344 K I G PI+G+I MD M DITD I++GD + + G + I D Sbjct: 297 -------KAKVIINGQFAPIIGRICMDQCMVDITDIKGDIKIGDEVILMGQENGIKIDAD 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A GT NY+++ I R + Y Sbjct: 350 DIASMLGTINYEVVCMISKRVPRVY 374 >gi|77919828|ref|YP_357643.1| alanine racemase [Pelobacter carbinolicus DSM 2380] gi|77545911|gb|ABA89473.1| alanine racemase [Pelobacter carbinolicus DSM 2380] Length = 378 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 184/379 (48%), Gaps = 24/379 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 ++ R++IDL ALK+N++ L+G + AVVK +AYG G +A AL GV+ F Sbjct: 5 RAHRPTRVEIDLEALKHNFYQAQRLAGPGQGVLAVVKADAYGHGAAHVAMALQGVGVEMF 64 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CG 119 V VEEGV LR I VL G++PGQE+ + L+P + + G Sbjct: 65 GVAIVEEGVALREAGVVCPILVLGGLYPGQEENLLRYGLVPTLFDMDVARRLDSCARAAG 124 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 V PY ++VDTG +R+G + ++ + SHLA AD+P + VN QL Sbjct: 125 VVLPYHMKVDTGMSRVGFRPDDLPRVLEELGALSGLRMDGLFSHLAMADEPENTVNQKQL 184 Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPM 232 E FR + + + L++S+ +L L+RPGI LYG + + Sbjct: 185 EIFRGCLDRVRQAGFAPRYVHLSNSAALLTREVPECNLSRPGILLYGALPSPAFAGRFDL 244 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ RI IRK G VSYG + R +++AV +GYADGY LS + Sbjct: 245 KPVMSFRTRIAQIRKVPEGTGVSYGHRFVAERPTVLAVIPVGYADGYSRQLSNV------ 298 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G+ ++G + G + MD TM D+TD + VGD + + G D I D+ A Sbjct: 299 -----GEMLVRGQRARVAGTVCMDWTMIDVTDIPDVAVGDEVTLLGCDNGQCITADEWAE 353 Query: 349 ASGTTNYDLLVRIGTRYAK 367 GT +Y++ + R + Sbjct: 354 RIGTISYEVFCQFSKRVPR 372 >gi|153939434|ref|YP_001392754.1| alanine racemase [Clostridium botulinum F str. Langeland] gi|152935330|gb|ABS40828.1| alanine racemase [Clostridium botulinum F str. Langeland] gi|295320733|gb|ADG01111.1| alanine racemase [Clostridium botulinum F str. 230613] Length = 386 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G ++AP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEVAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGVKESIMILGYTPGALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + +A+S+ I+ N H R GI +YG + + Sbjct: 181 QMNKYNEFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|269964436|ref|ZP_06178677.1| alanine racemase [Vibrio alginolyticus 40B] gi|269830774|gb|EEZ84992.1| alanine racemase [Vibrio alginolyticus 40B] Length = 366 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 110/375 (29%), Positives = 181/375 (48%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL+AL++N + A + ++ AVVK N YG G +A F Sbjct: 6 MSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAF 63 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 64 GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLE 122 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ +F +SH CAD+ S + Q Sbjct: 123 TPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSDITPQQ 182 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235 +ERF++L S +G E SLA+S+G+L P H RPGI +YG + +K Q V Sbjct: 183 IERFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPV 241 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ GE V YGG RD+ + V A+GY DGYP + Sbjct: 242 MTLKSHLIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN---------- 291 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ++ G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y Sbjct: 292 -GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAY 350 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ R Y+ Sbjct: 351 ELVTKLTPRVEMEYS 365 >gi|197334235|ref|YP_002155060.1| alanine racemase [Vibrio fischeri MJ11] gi|197315725|gb|ACH65172.1| alanine racemase [Vibrio fischeri MJ11] Length = 357 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 170/368 (46%), Gaps = 18/368 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +ID++AL +N + + +++ AVVK N YG G IA G F V +E Sbjct: 4 ATAQIDMSALAHNLQKIKQQAPSSKLLAVVKANGYGHGLLNIAKGAQ--GADAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + I TN I + + L Sbjct: 62 EALQLRAGGIVKPILLLEGFYSAGDLPILVTNNIQTAIHCKEQLEALESTDLEFPVVAWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VD+G +RLG+ +E ++ K + + +SH CAD+ S + Q++ F +L Sbjct: 122 KVDSGMHRLGIRPEEFQEYVDRLHACKNVAKPLRYMSHFGCADELDSSTTTEQIDTFMSL 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARI 242 +G E SLA+S+G+L P+ RPGI +YG + +S +T + + Sbjct: 182 TKGCQG-ERSLAASAGLLAWPDSRLDWVRPGIIMYGVSPFSEQSAQELGYLPTMTLTSHL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE V YG RD+ I V AIGY DGYP T G + Sbjct: 241 IAVRDVKAGESVGYGAMWTSERDTKIGVIAIGYGDGYPRTAPN-----------GTPVLV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI G+++MDM D+ +VGD ++G D+ ++VA GT Y+L+ ++ Sbjct: 290 NGRKVPIAGRVSMDMLTVDLGPEAQDKVGDEAILWGRDLPSEEVAEHIGTIAYELVTKLT 349 Query: 363 TRYAKFYT 370 +R YT Sbjct: 350 SRVQMQYT 357 >gi|220903457|ref|YP_002478769.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|259710065|sp|B8J2K3|ALR_DESDA RecName: Full=Alanine racemase gi|219867756|gb|ACL48091.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 371 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 163/376 (43%), Gaps = 21/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + +IDL+A ++N + +L ++K + YG G +A G V Sbjct: 5 DRPVWAEIDLSAFRHNMRQIKSLLQPGTIFCPIIKADGYGHGAVPLAHEAVAMGAGYLGV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++E LR I +L P + ++ I S Q S S G++ Sbjct: 65 AILDEAAALRAAGITLPILILGYTPPQAAAFVVSNHITQTIFSKEQADALSAAASNLGIT 124 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG R+G+ +EA F + L + +H A +D Q R Sbjct: 125 VKVHVKVDTGMTRIGVRPEEAAAFCSYVAGLENVHLEGMFTHFASSDSADHAYCLEQFGR 184 Query: 182 FRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234 F I+ GI A+S+ IL P H + R GI LYG P+ + Sbjct: 185 FTAAIAAVEASGIRLGIRHCANSAAILSLPEGHLDMVRAGIILYGLKPSDECPMPIDLRP 244 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ +AR+ ++++ G VSYG ++S +A IGYADGY LS Sbjct: 245 VMRLKARLAMVKQVPPGVGVSYGSIYHTQKESSLATIPIGYADGYTRMLS---------- 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGTT 353 + ++G P++G+I MD M D++ VGD + +F GPD+ D++A GT Sbjct: 295 -RKAQVLLRGQRAPVVGRICMDQCMVDVSHVPQAAVGDEVLLFGGPDLPADEIAAHLGTI 353 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ +G R + Y Sbjct: 354 NYEVVCMVGKRVPRVY 369 >gi|170759362|ref|YP_001788727.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree] gi|169406351|gb|ACA54762.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree] Length = 386 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 174/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGSMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGIKEPIMILGYTPCALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + Q+ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIQIEGVFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ + I+ + +A+S+ I+ + H R GI +YG + + Sbjct: 181 QMNNYNEFINKLEEKNIQVHIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLRNN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 IKLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTSIENLKVGDVVTIMGEENGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|262393111|ref|YP_003284965.1| alanine racemase biosynthetic [Vibrio sp. Ex25] gi|262336705|gb|ACY50500.1| alanine racemase biosynthetic [Vibrio sp. Ex25] Length = 361 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 110/375 (29%), Positives = 181/375 (48%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL+AL++N + A + ++ AVVK N YG G +A F Sbjct: 1 MSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ +F +SH CAD+ SH+ Q Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSHITPQQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235 +E F++L S +G E SLA+S+G+L P H RPGI +YG + +K Q V Sbjct: 178 IELFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ GE V YGG RD+ + V A+GY DGYP + Sbjct: 237 MTLKSHLIAVREVKKGESVGYGGMWTSKRDTKVGVIAVGYGDGYPRSAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ++ G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y Sbjct: 287 -GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAY 345 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ R Y+ Sbjct: 346 ELVTKLTPRVEMEYS 360 >gi|312127105|ref|YP_003991979.1| alanine racemase [Caldicellulosiruptor hydrothermalis 108] gi|311777124|gb|ADQ06610.1| alanine racemase [Caldicellulosiruptor hydrothermalis 108] Length = 390 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 98/380 (25%), Positives = 160/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL L N ++ AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWAEIDLDNLVYNLENIKKKILPQTHIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + + + + Q + S+ G Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKVGKKA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLE 180 ++VDTG R+G E++ N +L I SH + ADDP S Q Sbjct: 128 KIHIKVDTGMGRIGFLCCDESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDNFTHEQFM 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISIK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 357 IGTINYEIVCSFSKRIPRVY 376 >gi|168181951|ref|ZP_02616615.1| alanine racemase [Clostridium botulinum Bf] gi|237796857|ref|YP_002864409.1| alanine racemase [Clostridium botulinum Ba4 str. 657] gi|182674830|gb|EDT86791.1| alanine racemase [Clostridium botulinum Bf] gi|229261016|gb|ACQ52049.1| alanine racemase [Clostridium botulinum Ba4 str. 657] Length = 386 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 174/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGVKNPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGVFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + L +S+ I+ N H R GI +YG + + Sbjct: 181 QMNKYNEFINKLEEKNIQLPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTKRESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|284033912|ref|YP_003383843.1| alanine racemase [Kribbella flavida DSM 17836] gi|283813205|gb|ADB35044.1| alanine racemase [Kribbella flavida DSM 17836] Length = 375 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 165/382 (43%), Gaps = 31/382 (8%) Query: 6 FLRLK--IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +R + +DL A+++N ++ A +A VVK + YG G +A A AG V Sbjct: 1 MVRAEAVVDLAAIRHNVAALRARLSSAELMTVVKADGYGHGMAPVARAARQAGADWIGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR IF ++ + ++ + + Sbjct: 61 VLEEALELRAAGDNGPIFCWLTTPGEPLARAIANDIDLSAGAPWEIDELAAGV-TDRPAR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLE 180 L++DTG R G +E + ++ + I SHLA +D+P S VN Q+ Sbjct: 120 VHLKIDTGLGRGGAVPEEWPTLIRAALKEQKTGRIVITGIWSHLASSDEPKSPVNEAQVA 179 Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231 F + ++ + + LA+S G L P HF L RPGI+ YG + + Sbjct: 180 TFESAVAVAESLGVDPGFKHLANSGGTLALPETHFDLVRPGIATYGLSPFGHALPSAELG 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ +T AR+ + ++ AG VSYG + S + + +GY DG P S Sbjct: 240 LRPAMTLRARLAMAKRVPAGAGVSYGLTWTAPKPSTLGLVPLGYGDGLPRHASN------ 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 G + G ++G+I MD + ++ D GD + +FGP + DD A Sbjct: 294 -----GAPVQVHGIRRSVVGRICMDQCVVNL-DDGDAAAGDEVVLFGPGDHGEPTADDWA 347 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 A+GT NY+++ R+G R + Y Sbjct: 348 DAAGTINYEIVTRLGPRIPRRY 369 >gi|332798489|ref|YP_004459988.1| alanine racemase [Tepidanaerobacter sp. Re1] gi|332696224|gb|AEE90681.1| Alanine racemase [Tepidanaerobacter sp. Re1] Length = 393 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 170/381 (44%), Gaps = 27/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I+L L++N + ++ NA+ A+VK + YG G ++A + G V Sbjct: 9 RPTWAEINLDDLRHNLLEIRRITSTNAKLCAIVKADGYGHGAVEVAQTALSCGAHYLGVA 68 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 ++E V+LR +A I +L Q I + ++ + S+ K + Sbjct: 69 FLDEAVELREKGIKAPILILGFTPENQFDTIIEHDITQTVYSLKSAILLSEKALKRKKKA 128 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG +R+G ++ F + ++ I++H A AD+ V Q Sbjct: 129 KVHIKLDTGMSRIGFQTDASSISDIRKLFQLEGLKVEGILTHFAKADEKDRTVTEEQFRI 188 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 F ++ + + +A+S+GI+ PN H + RPGI LYG ++ Sbjct: 189 FTEAVNTIEAKDYKIPIKHIANSAGIIEYPNTHLDMVRPGIILYGMYPSDEITKSKIHLK 248 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +++ + R+ ++ G+ +SYGG R ++IA +GYADGY LS Sbjct: 249 PILSLKTRVAHVKSLPKGKAISYGGTYITERHTIIATLPVGYADGYSRLLSSR------- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDVAL 348 + I G P++G+I MD M D+TD ++ D + + G D I+ +D+A Sbjct: 302 ----AQVLINGQRAPVVGRICMDQCMVDVTDIQGEVKPKDEVTLIGADGSERIEAEDIAK 357 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++ I R + Y Sbjct: 358 IIGTINYEITCGISKRVPRVY 378 >gi|323493025|ref|ZP_08098160.1| alanine racemase [Vibrio brasiliensis LMG 20546] gi|323312723|gb|EGA65852.1| alanine racemase [Vibrio brasiliensis LMG 20546] Length = 358 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 113/365 (30%), Positives = 175/365 (47%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL AL++N + + +++ AVVK NAYG G +A + G F V +EE ++ Sbjct: 8 IDLEALQHNLQQIKLQAPSSKIMAVVKANAYGHGLRHVAKSAK--GADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + PG ++ N+ V+ QL + L++D Sbjct: 66 LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLVALEQ-AELETPVVVWLKID 124 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ DF +SH CAD+ + + Q E F TL Sbjct: 125 SGMHRLGVRPEQYSDFVTRLKACDNVAKPLRYMSHFGCADELDRPITNEQTELFMTLTEG 184 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILI 245 +G E SLA+S+G+L P+ RPGI +YG + +K Q V+T ++ +I + Sbjct: 185 CEG-ERSLAASAGLLAWPDSQLDWVRPGIIMYGVSPFNDKTAQDLGYQPVMTLKSHLIAV 243 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AGE V YGG RD+ + V AIGY DGYP T G + G Sbjct: 244 RDVKAGESVGYGGVWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNGR 292 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI G+++MDM D+ +VGD ++G D+ ++VA GT Y+L+ ++ +R Sbjct: 293 KVPISGRVSMDMLTVDLGPDAKDQVGDEAILWGRDLPAEEVAGHIGTIAYELVTKLTSRV 352 Query: 366 AKFYT 370 Y+ Sbjct: 353 DMEYS 357 >gi|332982730|ref|YP_004464171.1| alanine racemase [Mahella australiensis 50-1 BON] gi|332700408|gb|AEE97349.1| alanine racemase [Mahella australiensis 50-1 BON] Length = 376 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 164/378 (43%), Gaps = 27/378 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +I LT + N + G+ AVVK + YG G ++A +AG + V E Sbjct: 9 WAEIRLTDIAYNIAQLRRCIGDDTLFMAVVKADGYGHGAYRVAQTAIDAGARWLGVAIAE 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125 EG +LR A I VL GI P + + + + L + S+ S + G S Sbjct: 69 EGAELRDKGIDAPILVLGGIMPYEAEEVVASGLCQTVFSLDVAKALSDASVKQGKSADVH 128 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VDTG R+G+ E ++ + +H A +D Q+ F Sbjct: 129 IKVDTGMGRVGVRPGLELEQLIEGLVGLPGINITGMFTHFAESDACDKSFTKYQMSLFVQ 188 Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV---- 235 I+ K + A+S+ ++ + HF + R GIS+YG ++P + Sbjct: 189 AINQAKAMNVGPLILHAANSAAVIDYTDAHFNMVRGGISIYGYYPSNEINNPQKIDLKPA 248 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +AR++ ++ AG +SYG R S IA + GYADGY LS Sbjct: 249 LSWKARVVYVKDVPAGTPISYGRTFTTQRSSKIATISAGYADGYRRQLSN---------- 298 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G I+G P++G++ MD M D+TD + GD + + G I D++A Sbjct: 299 -KGCVLIRGNRAPVIGRVCMDQFMVDVTDIPGVVTGDEVVLIGRQGNETITADELAELCD 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y++L IG R + Y Sbjct: 358 TISYEILTSIGPRVPRIY 375 >gi|255747170|ref|ZP_05421113.1| alanine racemase biosynthetic [Vibrio cholera CIRS 101] gi|262147254|ref|ZP_06028055.1| alanine racemase biosynthetic [Vibrio cholerae INDRE 91/1] gi|255735219|gb|EET90621.1| alanine racemase biosynthetic [Vibrio cholera CIRS 101] gi|262031314|gb|EEY49927.1| alanine racemase biosynthetic [Vibrio cholerae INDRE 91/1] gi|327483230|gb|AEA77637.1| Alanine racemase, biosynthetic [Vibrio cholerae LMA3894-4] Length = 364 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 1 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 345 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 346 ELVTKLTSRVEMSY 359 >gi|241203930|ref|YP_002975026.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857820|gb|ACS55487.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 389 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 185/365 (50%), Positives = 246/365 (67%), Gaps = 2/365 (0%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DLTAL NW M SG AR +AVVK +AYG+G E ALY AG +DFFV +V+ Sbjct: 21 LRLTVDLTALTENWRDMARRSGAARASAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 80 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV LRLY P+ARIFVL GI PG E+ FD +L+PVISS QL F+ +++ +P AL Sbjct: 81 EGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYPCAL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTGFNRLGL + +A+ + L++SHLACADDP+ +N QLE F + Sbjct: 141 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACADDPTHAMNRQQLESFHRVS 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG ++PM+ V TAEARII +R Sbjct: 201 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVSGMANPMRPVATAEARIIQVR 260 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE VSYG +L R+S +A+A+ GYADGY + S V GG+GFI G+ Sbjct: 261 SVAAGETVSYGRALQLRRESRLAIASAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 320 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+ITMD+T+FDITD + GDY+++FG ++ +DDVA ASGT Y++L +G R Sbjct: 321 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPVDDVARASGTIGYEILTSMGLR 380 Query: 365 YAKFY 369 + + Y Sbjct: 381 HERRY 385 >gi|254230408|ref|ZP_04923789.1| alanine racemase [Vibrio sp. Ex25] gi|151937067|gb|EDN55944.1| alanine racemase [Vibrio sp. Ex25] Length = 366 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 110/375 (29%), Positives = 181/375 (48%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL+AL++N + A + ++ AVVK N YG G +A F Sbjct: 6 MSYMKAAKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAF 63 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 64 GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLE 122 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ +F +SH CAD+ SH+ Q Sbjct: 123 TPVVVWLKIDSGMHRLGVRPEQYDEFVTRLKECPNVAKPLRYMSHFGCADELDSHITPQQ 182 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235 +E F++L S +G E SLA+S+G+L P H RPGI +YG + +K Q V Sbjct: 183 IELFKSLTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPV 241 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ GE V YGG RD+ + V A+GY DGYP + Sbjct: 242 MTLKSHLIAVREVKKGESVGYGGMWTSKRDTKVGVIAVGYGDGYPRSAPN---------- 291 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ++ G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y Sbjct: 292 -GTPVWVNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAY 350 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ R Y+ Sbjct: 351 ELVTKLTPRVEMEYS 365 >gi|15640399|ref|NP_230026.1| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590967|ref|ZP_01678287.1| alanine racemase, biosynthetic [Vibrio cholerae 2740-80] gi|153216658|ref|ZP_01950565.1| alanine racemase, biosynthetic [Vibrio cholerae 1587] gi|153823514|ref|ZP_01976181.1| alanine racemase, biosynthetic [Vibrio cholerae B33] gi|153827276|ref|ZP_01979943.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-2] gi|153830458|ref|ZP_01983125.1| alanine racemase, biosynthetic [Vibrio cholerae 623-39] gi|227080584|ref|YP_002809135.1| alanine racemase, biosynthetic [Vibrio cholerae M66-2] gi|229504955|ref|ZP_04394466.1| alanine racemase biosynthetic [Vibrio cholerae BX 330286] gi|229508607|ref|ZP_04398103.1| alanine racemase biosynthetic [Vibrio cholerae B33] gi|229516019|ref|ZP_04405470.1| alanine racemase biosynthetic [Vibrio cholerae RC9] gi|229526947|ref|ZP_04416344.1| alanine racemase biosynthetic [Vibrio cholerae 12129(1)] gi|229606347|ref|YP_002876995.1| alanine racemase [Vibrio cholerae MJ-1236] gi|254227117|ref|ZP_04920668.1| alanine racemase, biosynthetic [Vibrio cholerae V51] gi|254286204|ref|ZP_04961163.1| alanine racemase, biosynthetic [Vibrio cholerae AM-19226] gi|254851683|ref|ZP_05241033.1| alanine racemase [Vibrio cholerae MO10] gi|298501269|ref|ZP_07011067.1| alanine racemase [Vibrio cholerae MAK 757] gi|9654790|gb|AAF93545.1| alanine racemase, biosynthetic [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547193|gb|EAX57320.1| alanine racemase, biosynthetic [Vibrio cholerae 2740-80] gi|124114169|gb|EAY32989.1| alanine racemase, biosynthetic [Vibrio cholerae 1587] gi|125620360|gb|EAZ48743.1| alanine racemase, biosynthetic [Vibrio cholerae V51] gi|126518959|gb|EAZ76182.1| alanine racemase, biosynthetic [Vibrio cholerae B33] gi|148874060|gb|EDL72195.1| alanine racemase, biosynthetic [Vibrio cholerae 623-39] gi|149738824|gb|EDM53166.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-2] gi|150423619|gb|EDN15561.1| alanine racemase, biosynthetic [Vibrio cholerae AM-19226] gi|227008472|gb|ACP04684.1| alanine racemase, biosynthetic [Vibrio cholerae M66-2] gi|229335559|gb|EEO01039.1| alanine racemase biosynthetic [Vibrio cholerae 12129(1)] gi|229346922|gb|EEO11889.1| alanine racemase biosynthetic [Vibrio cholerae RC9] gi|229354375|gb|EEO19302.1| alanine racemase biosynthetic [Vibrio cholerae B33] gi|229358013|gb|EEO22929.1| alanine racemase biosynthetic [Vibrio cholerae BX 330286] gi|229369002|gb|ACQ59425.1| alanine racemase biosynthetic [Vibrio cholerae MJ-1236] gi|254847388|gb|EET25802.1| alanine racemase [Vibrio cholerae MO10] gi|297540023|gb|EFH76086.1| alanine racemase [Vibrio cholerae MAK 757] Length = 375 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 357 ELVTKLTSRVEMSY 370 >gi|119776189|ref|YP_928929.1| alanine racemase [Shewanella amazonensis SB2B] gi|254802373|sp|A1SA53|ALR_SHEAM RecName: Full=Alanine racemase gi|119768689|gb|ABM01260.1| alanine racemase [Shewanella amazonensis SB2B] Length = 364 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 176/370 (47%), Gaps = 22/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA----GVQDF 60 F R +I ALK N + ++ ++ AVVK N YG G +A L +A F Sbjct: 3 PFPRAEISSRALKANLKRLRQIAPGSKVMAVVKANGYGHGLLNVAEVLTDAHSNADADGF 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 + +EE +++R AR+ +L G ++ + ++ V+ V QL + Sbjct: 63 GLARLEEALEVRAGGVSARLLLLEGFFRSEDLPLLVEHDIDTVVHHVSQLDMLESVSLS- 121 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++D+G +RLG E D N + + +++H +CAD+P + Q Sbjct: 122 KPVTVWLKIDSGMHRLGFHASEFKDVYQRLQQNPNVAKPVHLMTHFSCADEPQKDFTATQ 181 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235 + F L G + +LA+S+G+L P RPGI+LYG + + +H ++ Sbjct: 182 MAHFNALTQGLPG-DRTLANSAGVLYWPQSQADWIRPGIALYGVSPVAGDLGSNHGLEPA 240 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +++I +R+ AGE V YG +RD+ + V AIGY DGYP Sbjct: 241 MELVSQLIAVREHSAGESVGYGAYWTASRDTRLGVVAIGYGDGYPRNA-----------P 289 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI+G+++MDM D+ + +VGD ++G ++ +++VA GT Y Sbjct: 290 EGTPVLVNGRRVPIVGRVSMDMLTVDLGPDAADKVGDRALLWGKELPVEEVAERIGTIAY 349 Query: 356 DLLVRIGTRY 365 +L+ ++ R Sbjct: 350 ELVTKLTPRV 359 >gi|297582256|ref|ZP_06944171.1| alanine racemase [Vibrio cholerae RC385] gi|297533514|gb|EFH72360.1| alanine racemase [Vibrio cholerae RC385] Length = 375 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 129 TPVMVWLKIDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 357 ELVTKLTSRVEMSY 370 >gi|118444310|ref|YP_877347.1| alanine racemase [Clostridium novyi NT] gi|166919551|sp|A0PY95|ALR_CLONN RecName: Full=Alanine racemase gi|118134766|gb|ABK61810.1| alanine racemase [Clostridium novyi NT] Length = 387 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 168/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +I+L L +N + LS +VK +AYG G I P L G Sbjct: 1 MFKHLRPVWAEINLDNLASNMKHIKELSNTKEIIGIVKADAYGHGALDIVPTLIENGATA 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V V EGV+LR + I VL P ++ ++ + S+ SK Sbjct: 61 LAVAVVSEGVELRRGGIECPIMVLGFTPPSLIDMLLKHDIEQTVFSLDYAKELSKAAEKM 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G E ++ ++ + SH + AD+ + ++ Sbjct: 121 HKVAKIHIAVDTGMGRIGFLPNEQSIQDVKAISMLPNIKIKGMFSHFSTADEKNKEYSAY 180 Query: 178 QLERFRTLIS----HYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 QL +F IE +++S+ I+ P F+ RPGI LYG Sbjct: 181 QLNQFNKFYEGLKRENVNIETRHISNSAAIMDLPETIFEGVRPGIILYGYYPSNEVDKTK 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ + ++ I+K +GE +SYG + K R+SLIA +GYADGY L G Sbjct: 241 LELKPVMQLKTNVVHIKKIPSGEYISYGRKFKTDRESLIATLPVGYADGYTRLLFG---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLD 344 K I G + P++G+I MD M DITD I+VG+ + + G I D Sbjct: 297 -------KAKVIINGQLAPVVGRICMDQCMVDITDIKGDIKVGEEVILIGEKNGVKIDAD 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A GT NY+++ I R + Y Sbjct: 350 DIAEMLGTINYEVICMISKRVPRVY 374 >gi|187776664|ref|ZP_02993137.1| hypothetical protein CLOSPO_00179 [Clostridium sporogenes ATCC 15579] gi|187775323|gb|EDU39125.1| hypothetical protein CLOSPO_00179 [Clostridium sporogenes ATCC 15579] Length = 386 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 174/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKEIKKICGNKEIIGVIKANAYGHGAMEIAPTLLANGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S S++ Sbjct: 61 LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSRIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVENVYKISKLPNIKIEGVFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + +A+S+ I+ + H R GI +YG + + Sbjct: 181 QMNKYNQFINKLEEKNIQVPIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLTNN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K ++S+IA IGYADGY LS Sbjct: 241 TKLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTEKESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T ++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTSIEDLKVGDVVTIMGEESGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASEIGTISYEVICNVNKRVPRVY 373 >gi|148381338|ref|YP_001255879.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|153933765|ref|YP_001385715.1| alanine racemase [Clostridium botulinum A str. ATCC 19397] gi|153935067|ref|YP_001389121.1| alanine racemase [Clostridium botulinum A str. Hall] gi|148290822|emb|CAL84957.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|152929809|gb|ABS35309.1| alanine racemase [Clostridium botulinum A str. ATCC 19397] gi|152930981|gb|ABS36480.1| alanine racemase [Clostridium botulinum A str. Hall] Length = 386 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ I SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGIFSHFSSADESDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + +A+S+ I+ N H R GI +YG + + Sbjct: 181 QMNKYNAFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTKRESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|262166870|ref|ZP_06034592.1| alanine racemase biosynthetic [Vibrio cholerae RC27] gi|262024700|gb|EEY43379.1| alanine racemase biosynthetic [Vibrio cholerae RC27] Length = 364 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 176/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 1 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + +SH CAD+ Q Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCDNVAKPLRYMSHFGCADELDKSTTVEQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 345 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 346 ELVTKLTSRVEMSY 359 >gi|226950848|ref|YP_002805939.1| alanine racemase [Clostridium botulinum A2 str. Kyoto] gi|226841311|gb|ACO83977.1| alanine racemase [Clostridium botulinum A2 str. Kyoto] Length = 386 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 176/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIEIEGVFSHFSSADESDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + +A+S+ I+ N H R GI +YG + + Sbjct: 181 QMNKYNAFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRNN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYGG K R+S+IA IGYADGY LS Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGGTFKTKRESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|229512608|ref|ZP_04402078.1| alanine racemase biosynthetic [Vibrio cholerae TMA 21] gi|229350390|gb|EEO15340.1| alanine racemase biosynthetic [Vibrio cholerae TMA 21] Length = 375 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLHHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 357 ELVTKLTSRVEMSY 370 >gi|167746566|ref|ZP_02418693.1| hypothetical protein ANACAC_01276 [Anaerostipes caccae DSM 14662] gi|167653526|gb|EDR97655.1| hypothetical protein ANACAC_01276 [Anaerostipes caccae DSM 14662] Length = 388 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 103/384 (26%), Positives = 162/384 (42%), Gaps = 26/384 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ + IDL A+ +N + L + + V+K + YG G +A AL GV Sbjct: 1 MNQYYRVYAAIDLDAVCHNISEIKKLVGPDTKIMPVIKADGYGHGAVPVAKALNKIGVDG 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +EEG+ LR I +L Q + + + S SK Sbjct: 61 FAVAIIEEGIALRKQGITKPILILGYTSEYQYASLIQHEIEQTVFSYEMAEAISKFAVTM 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VDTG NR+G +E++ ++ I +H ACAD+ Sbjct: 121 KKEARIHIKVDTGMNRIGFKPTEESVGQVQRIQKLPNIKIQGIFTHFACADEEDKTSARY 180 Query: 178 QLERFRTLISHY--KGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q E F +S KGIE +++S+ I+ + R GI YG Sbjct: 181 QKELFDQFVSKIEEKGIEIPVKHVSNSAAIMDLRECRMDMVRSGIITYGLYPSEEVDKSA 240 Query: 233 Q---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + +I +++ GE VSYG R + IA +GYADGYP LS Sbjct: 241 IDLKPALSLISHVIHVKEVGPGEGVSYGSTFVTDRKTRIATIPVGYADGYPRALSSR--- 297 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 G+ I+G PI+G+I MD M D+TD + V D + + G +I +++ Sbjct: 298 --------GRVIIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDRVTLVGTEGDKNISVEE 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A +G+ NY+ + IG R + Y Sbjct: 350 AADLAGSFNYEFVCGIGKRVPRVY 373 >gi|302184903|ref|ZP_07261576.1| alanine racemase [Pseudomonas syringae pv. syringae 642] Length = 357 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 164/369 (44%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AVVK +AYG G ++A AL A F V Sbjct: 2 RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A + +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQAHLGKPITV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH + AD+ +S + QL F T Sbjct: 120 WLKLDTGMHRVGLHPHEYQAAYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVFET 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 E SL +S +L P +RPGI LYG T + +Q V+T E++ Sbjct: 180 F-RKGLAAETSLKNSPAVLGWPQIPSDWSRPGIMLYGATPFEQVHPLADRLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ GE V YG R S I V A+GYADGYP G Sbjct: 239 IISVRELPVGEPVGYGATFVCDRPSRIGVVAMGYADGYPRHA-----------PTGTPVQ 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+TD +G ++++G + +VA + T Y++ + Sbjct: 288 IDGQPSRLLGRVSMDMLCVDLTDVPKAGLGSRVELWGKQVLASEVAQGAETIPYEIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|121729738|ref|ZP_01682178.1| alanine racemase, biosynthetic [Vibrio cholerae V52] gi|147674692|ref|YP_001218641.1| alanine racemase [Vibrio cholerae O395] gi|121628523|gb|EAX61007.1| alanine racemase, biosynthetic [Vibrio cholerae V52] gi|146316575|gb|ABQ21114.1| alanine racemase, biosynthetic [Vibrio cholerae O395] gi|227012228|gb|ACP08438.1| alanine racemase, biosynthetic [Vibrio cholerae O395] Length = 375 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 176/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + +SH CAD+ Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCDNVAKPLRYMSHFGCADELDKSTTVEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 357 ELVTKLTSRVEMSY 370 >gi|188584948|ref|YP_001916493.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349635|gb|ACB83905.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 390 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 166/372 (44%), Gaps = 23/372 (6%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +I+L L N++ + N + ++K + YG G +IA L N GV V ++E V Sbjct: 13 EINLDNLSYNFNRIREHVNNKKIMGIIKADGYGHGAVEIAEELLNQGVDYLGVAILDEAV 72 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQV 128 +LR A I +L + + P I + S+ G + +++ Sbjct: 73 ELRKAGIAAPILILGYTPVEHVDVCLKYGITPTIYTYEMAEALSQTARKMGKTAFVHVKI 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS- 187 DTG R+G++ + + +F N ++ + +H + AD+ Q+ F + Sbjct: 133 DTGMGRIGIAPENSAEFVKNISKLPSLEVEGVFTHFSVADEEDKTYTQQQINSFEKALKM 192 Query: 188 -HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEAR 241 +GIE L ++ + P+ +F + R G++L+G + ++ V++ + + Sbjct: 193 LEDEGIEIPLKHAANSPATIDLPDAYFDMVRVGLALFGLYPSPHMKEKISLKPVMSLKTQ 252 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + +++ G +SYG + +S+I +GYADG+ LS + G+ Sbjct: 253 VSHVKQVPKGTSISYGRKFITEDESIIGTLPVGYADGFTRLLSNI-----------GEVI 301 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDL 357 + G VPI+G I MD MF D I +GD + I G I ++D+A GT NY++ Sbjct: 302 VNGKRVPIVGAICMDQCMFLGDDVPEIGIGDEVVIIGEQDGTQITVEDIADKLGTINYEI 361 Query: 358 LVRIGTRYAKFY 369 + + R + Y Sbjct: 362 VTMVDKRVPRLY 373 >gi|325290796|ref|YP_004266977.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271] gi|324966197|gb|ADY56976.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271] Length = 376 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 107/381 (28%), Positives = 179/381 (46%), Gaps = 25/381 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH IDL AL+ N+ + + N+ A+VK NAYG G +I L GV+ F Sbjct: 1 MHGMRPAWACIDLGALRRNYRRICRQT-NSEVMAIVKANAYGHGALEIVRTLKEEGVRRF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V +EE +++R P+ + ++ P Q + I +IP + + Q +S G Sbjct: 60 GVAILEEALQIREKFPEVTVMLIGPTMPDQAERIVAEGIIPEVFRLEQAEAFSLEAEKKG 119 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + ++VDTG R+G ++AL+ ++ I +HLA AD+ QL Sbjct: 120 IPAILHIKVDTGMGRIGFQ-EDALENILKIAQLPGIEIEGIYTHLATADEIDLGFAFTQL 178 Query: 180 ERFR-----TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232 +RF + +A+S+ IL + ++L RPG+ LYG + Sbjct: 179 KRFDGLYESLKTAGLNIPMRHVANSAAILQLRDQEYELCRPGLMLYGQLPMNHWEGENGF 238 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +++ +ARI+ ++K AG+ VSYG +L+A +GYADG +LS + Sbjct: 239 EPLMSLKARIVHLKKIAAGDSVSYGRTFIAQAPTLVATLPLGYADGLRRSLSNNWN---- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 +KG P++G+I MD TM D+T +E+GD + I G + + +A Sbjct: 295 -------VIVKGRYAPVIGRICMDQTMIDVTGIEGVEIGDEVTILGSEGKSSLTAAQMAE 347 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +GT +Y++L I R + Y Sbjct: 348 CAGTISYEILCGISQRVPRVY 368 >gi|77461745|ref|YP_351252.1| alanine racemase [Pseudomonas fluorescens Pf0-1] gi|77385748|gb|ABA77261.1| alanine racemase, catabolic [Pseudomonas fluorescens Pf0-1] Length = 365 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 105/370 (28%), Positives = 170/370 (45%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AV+K +AYG G + A AL F V Sbjct: 10 RPARALIDLQALRHNYRIAREVTG-AKALAVIKADAYGHGAVRCAQALEAE-ADGFAVAC 67 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + + V+ S+ QL + + Sbjct: 68 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDFWCVVHSLWQLEAIEQT-TLSKPIT 126 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ +++SH A AD+ ++ Q+ F Sbjct: 127 VWLKLDSGMHRVGLHPKDYPAAYQRLLASGNVAKVVLMSHFARADELHEQSSADQVAVFE 186 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240 E SL +S +L P H RPGI LYG T + +Q V+T E+ Sbjct: 187 A-ARQGLAAEVSLRNSPAVLGWPQIHSDWVRPGIMLYGATPFEEANAVAERLQPVMTLES 245 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG + + I V A+GYADGYP G Sbjct: 246 KVISVRELPAGEPVGYGAKFITDKPMRIGVVAMGYADGYPRQA-----------PTGTPV 294 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ILG+++MDM D+TD +G ++++G +I DVA + T Y + Sbjct: 295 LVAGQRSRILGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASDVAKWADTIPYQIFCN 354 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 355 L-RRVPRLYS 363 >gi|320155181|ref|YP_004187560.1| alanine racemase, biosynthetic [Vibrio vulnificus MO6-24/O] gi|319930493|gb|ADV85357.1| alanine racemase, biosynthetic [Vibrio vulnificus MO6-24/O] Length = 361 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 174/374 (46%), Gaps = 18/374 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + IDL AL++N + + +++ AVVK N YG G +A G F Sbjct: 1 MNYMKAATACIDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAKHAV--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR I +L G + + + TN I + + + Sbjct: 59 GVARIEEALQLRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQLRDLENAELET 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +RLG+ ++ F + + +SH CAD+ ++ + Q+ Sbjct: 119 PVVVWLKIDSGMHRLGVRPEQYQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQI 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 E F +L KG E SLA+S+G+L + RPGI +YG + +K + V+ Sbjct: 179 ELFLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ +I +R AGE V YG RD+ + V AIGY DGYP T Sbjct: 238 TLKSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRTAPN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G VPI G+++MDM D+ + VGD ++G D+ +DVA GT Y+ Sbjct: 287 GTPVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYE 346 Query: 357 LLVRIGTRYAKFYT 370 L+ ++ +R Y+ Sbjct: 347 LVTKLTSRVEMSYS 360 >gi|260775631|ref|ZP_05884528.1| alanine racemase biosynthetic [Vibrio coralliilyticus ATCC BAA-450] gi|260608812|gb|EEX34977.1| alanine racemase biosynthetic [Vibrio coralliilyticus ATCC BAA-450] Length = 361 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + IDL AL++N + + + N++ AVVK N+YG G +A + F Sbjct: 1 MSYMKAATAFIDLDALQHNLKQIKSQAPNSKIMAVVKANSYGHGLRHVAKHATD--ADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRACGVVTPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLEALEQ-AELD 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ DF + + + +SH CAD+ + Q Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYTDFVSRLKACRNVAKPLRYMSHFGCADELDKSTTTEQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235 E F L +G E SLA+S+G+L N RPGI +YG + +K Q V Sbjct: 178 TELFLALTDGCEG-ERSLAASAGLLAWQNSQLDWVRPGIIMYGVSPFNDKTAQQMGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R AGE V YGG RD+ + V AIGY DGYP T Sbjct: 237 MTLKSHLIAVRDVKAGESVGYGGMWTSQRDTKVGVIAIGYGDGYPRTAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ + +VGD ++G + ++VA GT Y Sbjct: 287 -GTPVLVNGRKVPIAGRVSMDMLTVDLGPDANDKVGDEAILWGQSLPAEEVACHIGTIAY 345 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ +R Y+ Sbjct: 346 ELVTKLTSRVEMEYS 360 >gi|262190632|ref|ZP_06048868.1| alanine racemase biosynthetic [Vibrio cholerae CT 5369-93] gi|20137519|sp|Q9KUY6|ALR1_VIBCH RecName: Full=Alanine racemase 1 gi|262033497|gb|EEY51999.1| alanine racemase biosynthetic [Vibrio cholerae CT 5369-93] Length = 361 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 174/364 (47%), Gaps = 20/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L AL++N + + ++ AVVK N YG G IA G F V +EE ++ Sbjct: 8 INLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + PG ++ N+ V+ QL + L+VD Sbjct: 66 LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLETPVMVWLKVD 124 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ DF + + + +SH CAD+ Q E F +L Sbjct: 125 SGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQTELFLSLTQG 184 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245 +G E SLA+S+G+L P + RPGI +YG + + KS Q V+T ++ +I + Sbjct: 185 CQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPVMTLKSHLIAV 243 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AGE V YGG RD+ I V AIGY DGYP T G + G Sbjct: 244 REVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN-----------GTPVVVNGR 292 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI G+++MDM D+ VGD ++G ++ +++VA GT Y+L+ ++ +R Sbjct: 293 RVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGYELVTKLTSRV 352 Query: 366 AKFY 369 Y Sbjct: 353 EMSY 356 >gi|170755879|ref|YP_001783035.1| alanine racemase [Clostridium botulinum B1 str. Okra] gi|169121091|gb|ACA44927.1| alanine racemase [Clostridium botulinum B1 str. Okra] Length = 386 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLRQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGVKESIMILGYTPGALGDMLLDNDIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + +A+S+ I+ N H R GI +YG + + Sbjct: 181 QMNKYNEFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + ++ Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEN 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|187777116|ref|ZP_02993589.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC 15579] gi|187774044|gb|EDU37846.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC 15579] Length = 402 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 103/388 (26%), Positives = 168/388 (43%), Gaps = 30/388 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+L L +N + ++ + +VVK +AYG G +IA L G V Sbjct: 5 SRPAWIEINLDNLIHNMKEIRRVAKSKEIISVVKADAYGHGASEIASLLLENGANRLAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH--------PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 + E ++LR A I +L + I L +SS SK Sbjct: 65 VLSEALELRNSGITAPIIILGYTPLRYDEKTICNNAETIIKNGLEVSVSSYKYAEQLSKK 124 Query: 116 MSC-GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G + +DTG RLG +E L+ + + SH + AD+ + Sbjct: 125 AQQLGKDVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIFEGLFSHFSTADEKNKD 184 Query: 174 VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 + Q ++F K +A+S+ ++ P H RPGI+ YG Sbjct: 185 YTNEQFKKFLDFYYKLKDKNVKINIKHIANSAALIDLPYTHLDAIRPGIAQYGYYPSSEV 244 Query: 229 SH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 +H ++ +T + I+L++ +GE +SYG + + R+S IAV IGYADGY LS Sbjct: 245 NHENINLRPTMTLKTNIVLVKDIKSGESISYGRRFRTIRNSKIAVLPIGYADGYERELSD 304 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341 + + G PI+G+ITMDM M D+TD ++VGD + + G I Sbjct: 305 N--------VYKTQVIVNGRRAPIVGRITMDMCMIDVTDVGDVKVGDEVILIGECNDEKI 356 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++D+A T Y++ RI R ++Y Sbjct: 357 AVEDIADLLHTIPYEVTSRISKRIPRYY 384 >gi|322807721|emb|CBZ05296.1| alanine racemase [Clostridium botulinum H04402 065] Length = 386 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDNLQHNLKQIKKICGNKEIIGVIKANAYGHGAMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D N+ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGVKEPIMILGYTPWALGDMLLDNNIEQSVYSYNDALELSKIAVLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + ++ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIKIEGLFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ ++ I+ + +A+S+ I+ N H R GI +YG + + Sbjct: 181 QMNKYNEFINKLEEKNIQVPIKHIANSAAIIDLENTHLDAVRAGIIMYGYYPSNYVLRDN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 INLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + ++ Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTFIENLKVGDVVTIMGEENGVSYTAEN 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|27379181|ref|NP_770710.1| alanine racemase [Bradyrhizobium japonicum USDA 110] gi|27352332|dbj|BAC49335.1| alanine racemase [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 193/364 (53%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + + A AAV+K +AYG G ++A AL+ AG + FFV ++EE Sbjct: 33 LTVDLDAIIANWRKLEKTAVPAECAAVIKADAYGCGAAQVARALHKAGCKTFFVATIEEA 92 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 K+R P+ I+VL G + N PVI + +L + G + A+ Sbjct: 93 RKVRAAVPEPTIYVLGGYFQNTGEHYAQINCRPVIGDLNELAEWDVFCRRTGWNGGAAVH 152 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL+L EA N ++L++SHL A+ +S VN+ QL FR + S Sbjct: 153 IDTGMNRLGLTLAEAQAII-PRINAGDHGITLVMSHLVSAEQLNSPVNAKQLASFRGIAS 211 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ A+LA+SSGI LG + F L RPG +LYG +PMQ VV +ARI+ IR Sbjct: 212 EFSGVPAALANSSGIFLGAPFQFDLVRPGAALYGVNPTPEADNPMQPVVDLKARIVQIRN 271 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YGG R + +A+ A+GYADGY S D G + + G Sbjct: 272 VERGESVGYGGTWTARRPTKLAIIAVGYADGYFRAASSNDGTR------GAEVIVAGKRC 325 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P+ G+++MD+ DITD G + + G I +D++A GT Y++L +G RY Sbjct: 326 PVAGRVSMDLIAIDITDLPPNAARRGHLVTLIGEGITVDELAHHFGTIGYEVLTSLGHRY 385 Query: 366 AKFY 369 A+ Y Sbjct: 386 ARVY 389 >gi|229519921|ref|ZP_04409352.1| alanine racemase biosynthetic [Vibrio cholerae TM 11079-80] gi|229343049|gb|EEO08036.1| alanine racemase biosynthetic [Vibrio cholerae TM 11079-80] Length = 375 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 176/374 (47%), Gaps = 20/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L + E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 189 TELFLSLTQGCQD-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIGY 356 Query: 356 DLLVRIGTRYAKFY 369 +L+ ++ +R Y Sbjct: 357 ELVTKLTSRVEMSY 370 >gi|116251316|ref|YP_767154.1| alanine racemase [Rhizobium leguminosarum bv. viciae 3841] gi|115255964|emb|CAK07045.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841] Length = 389 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 183/365 (50%), Positives = 246/365 (67%), Gaps = 2/365 (0%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DLTAL NW M SG AR +AVVK +AYG+G E ALY AG +DFFV +V+ Sbjct: 21 LRLTVDLTALTENWRDMARRSGAARASAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 80 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV LRLY P+AR+FVL GI PG E+ F+ +L+PVISS QL F+ +++ +P AL Sbjct: 81 EGVTLRLYAPEARVFVLSGIWPGTERRFFENDLVPVISSDEQLAFWMAVLADYGDYPCAL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTGFNRLGL + +A+ + L++SHLACADDP+ +N QLE F + Sbjct: 141 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACADDPTHAMNRQQLESFHRVS 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG ++PM+ V TAEARII +R Sbjct: 201 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 260 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE VSYG +L R+S +A+A+ GYADGY + S V GG+GFI G+ Sbjct: 261 SVEAGETVSYGRALQLRRESRLAIASAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 320 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+ITMD+T+FDITD + GDY+++FG ++ +DDVA ASGT Y++L +G R Sbjct: 321 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPVDDVARASGTIGYEILTSMGLR 380 Query: 365 YAKFY 369 + + Y Sbjct: 381 HERRY 385 >gi|168178920|ref|ZP_02613584.1| alanine racemase [Clostridium botulinum NCTC 2916] gi|182669985|gb|EDT81961.1| alanine racemase [Clostridium botulinum NCTC 2916] Length = 386 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +IDL +L++N + + GN V+K NAYG G +IAP L GV Sbjct: 1 MFRNLRAVWAEIDLDSLQHNLKQIKKICGNKEIIGVIKANAYGHGSMEIAPTLLENGVSR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E ++LR+ + I +L ++ D ++ + S SK+ Sbjct: 61 LAVAVLSEAMELRMSGIKEPIMILGYTPCALGDMLLDNDIEQSVYSYNDALELSKIALLK 120 Query: 120 VS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +E+++ + Q+ + SH + AD+ Sbjct: 121 RKILKIHIVVDTGMGRIGFLPTKESVEDVYKISKLPNIQIEGVFSHFSSADELDKDYTLY 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKS 229 Q+ + I+ + +A+S+ I+ + H R GI +YG + + Sbjct: 181 QMNNYNEFINKLEEKNIQVHIKHIANSAAIIDLESTHLDAVRAGIIMYGYYPSNYVLRNN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+K +GE +SYG K R+S+IA IGYADGY LS Sbjct: 241 IKLKPVMSLKTSIVHIKKVSSGEYISYGRTFKTERESIIATLPIGYADGYNRLLSN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK + G + P++G++ MD M D+T +++VGD + I G + +D Sbjct: 297 -------KGKVIVNGKLAPVIGRVCMDQCMIDVTSIENLKVGDVVTIMGQENGVSYTAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ + R + Y Sbjct: 350 IASQIGTISYEVICNVNKRVPRVY 373 >gi|91227270|ref|ZP_01261695.1| alanine racemase [Vibrio alginolyticus 12G01] gi|91188664|gb|EAS74953.1| alanine racemase [Vibrio alginolyticus 12G01] Length = 358 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 109/369 (29%), Positives = 178/369 (48%), Gaps = 20/369 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL+AL++N + A + ++ AVVK N YG G +A F V +E Sbjct: 4 AKACIDLSALQHNLQRVKAQAPQSKVMAVVKANGYGHGLRHVAKHA--NHADAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 62 EALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLETPVVVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG+ ++ DF +SH CAD+ S + Q+E F++ Sbjct: 121 LKIDSGMHRLGVRPEQYDDFVTRLKECPNVAKPLRYMSHFGCADELDSDITPQQIELFKS 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 L S +G E SLA+S+G+L P H RPGI +YG + +K Q V+T ++ Sbjct: 181 LTSGCQG-ERSLAASAGLLAWPQSHLDWVRPGIIMYGVSPFDDKTAQDLGYQPVMTLKSH 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YGG RD+ + V A+GY DGYP + G + Sbjct: 240 LIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN-----------GTPVW 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y+L+ ++ Sbjct: 289 VNGRKVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVAGHIGTIAYELVTKL 348 Query: 362 GTRYAKFYT 370 R Y+ Sbjct: 349 TPRVEMEYS 357 >gi|224028214|dbj|BAH23434.1| alanine racemase [Pseudomonas taetrolens] Length = 357 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 172/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + +L V+ S+ QL + Sbjct: 60 IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIERTQ-LHKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ + +++SH A AD+ + + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P RPG+ LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAERLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD VG ++++G + +VA +GT Y + Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPEATVGSPVELWGKHVLASEVAAHAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-KRVPRDY 354 >gi|167036307|ref|YP_001671538.1| alanine racemase [Pseudomonas putida GB-1] gi|166862795|gb|ABZ01203.1| alanine racemase [Pseudomonas putida GB-1] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + +L V+ S+ QL K Sbjct: 60 IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEKTQ-LHKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ D +++SH A AD+ + + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P RPG+ LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVPQAEAARLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD VG ++++G + +VA +GT Y + Sbjct: 287 LVAGQRTQLIGRVSMDMLNIDLTDVPQATVGSPVELWGKQVLASEVAAQAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-KRVPRDY 354 >gi|66043507|ref|YP_233348.1| alanine racemase [Pseudomonas syringae pv. syringae B728a] gi|75503888|sp|Q4ZZW2|ALR_PSEU2 RecName: Full=Alanine racemase gi|63254214|gb|AAY35310.1| Alanine racemase [Pseudomonas syringae pv. syringae B728a] gi|330972182|gb|EGH72248.1| alanine racemase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 163/369 (44%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AVVK +AYG G ++A AL A F V Sbjct: 2 RPARAFIDLQALRHNYQLARESSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A + +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQARLGKPITV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH + AD+ +S + QL F T Sbjct: 120 WLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVFET 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 E SL +S +L P +RPGI LYG T + +Q V+T E++ Sbjct: 180 F-RKGLAAETSLKNSPAVLGWPQIPSDWSRPGIMLYGATPFDQVHPLADRLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ GE V YG R I V A+GYADGYP G Sbjct: 239 IISVRELPVGEPVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPVQ 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+T+ +G ++++G + +VA + T Y++ + Sbjct: 288 IDGQPSRLLGRVSMDMLCVDLTEVPQAGLGSRVELWGKQVLASEVAQRAETIPYEIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|26991945|ref|NP_747370.1| alanine racemase [Pseudomonas putida KT2440] gi|24987073|gb|AAN70834.1|AE016728_3 alanine racemase, catabolic [Pseudomonas putida KT2440] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 171/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + +L V+ S+ QL K Sbjct: 60 IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEKT-PLHKPLN 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ D ++++H A AD+ + S Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMTHFARADELDADATSQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P RPG+ LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD VG ++ +G + +VA +GT Y + Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPQATVGSPVEFWGKQVLASEVAAHAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-KRVPRDY 354 >gi|312876893|ref|ZP_07736869.1| alanine racemase [Caldicellulosiruptor lactoaceticus 6A] gi|311796304|gb|EFR12657.1| alanine racemase [Caldicellulosiruptor lactoaceticus 6A] Length = 390 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 160/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + IDL L N ++ R AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWADIDLDNLVYNLENIKKKILPQTRIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + + + + Q + S+ G Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKIGKKA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLE 180 ++VDTG R+G E++ N +L I SH + ADDP H Q Sbjct: 128 KIHIKVDTGMGRIGFLCCNESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDHFTHEQFM 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPSSSLKEHLSIK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGRQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 357 IGTINYEVVCSFSKRIPRVY 376 >gi|323496058|ref|ZP_08101118.1| alanine racemase [Vibrio sinaloensis DSM 21326] gi|323318802|gb|EGA71753.1| alanine racemase [Vibrio sinaloensis DSM 21326] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 110/364 (30%), Positives = 176/364 (48%), Gaps = 20/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L AL++N + + N++ AVVK N+YG G IA ++ G F V +EE ++ Sbjct: 8 INLDALEHNLEQIKRQAPNSKVMAVVKANSYGHGLRHIA--VHAHGADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + PG ++ N+ V+ QL + L+VD Sbjct: 66 LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLAALEQ-AELETPVVVWLKVD 124 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ F + + + +SH CAD+ + + Q E F +L Sbjct: 125 SGMHRLGVRPEQYNAFVSRLKACRNVAKPLRYMSHFGCADELNKPTTNEQTELFLSLTQG 184 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILI 245 +G E SLA+S+G+L P RPGI +YG + +K V+T ++ +I + Sbjct: 185 CEG-ERSLAASAGLLAWPESQLDWVRPGIIMYGVSPFNDKTALQMGYLPVMTLKSHLIAV 243 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AGE V YGG +D+ I V AIGY DGYP T G ++ G Sbjct: 244 RDVKAGESVGYGGTWTCEQDTKIGVIAIGYGDGYPRTAPN-----------GTPVWVNGR 292 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI G+++MDM D+ + VGD ++G D+ +++VA GT Y+L+ ++ +R Sbjct: 293 KAPIAGRVSMDMLTVDLGPGATDRVGDEAILWGNDLPVEEVAGHIGTIAYELVTKLTSRV 352 Query: 366 AKFY 369 Y Sbjct: 353 EMEY 356 >gi|332970508|gb|EGK09497.1| alanine racemase [Desmospora sp. 8437] Length = 412 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 28/385 (7%) Query: 2 HSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 SN + R IDL A+ +N R A VK NAYG G ++ A AG Sbjct: 3 KSNRYFRDTVALIDLDAITHNVSQFRRRLPAGCRLMAAVKANAYGHGSVPVSRAALAAGA 62 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-M 116 D V ++E ++LR A I VL I + + + + +++ Sbjct: 63 TDLAVAFLDEALELRAGGITAPILVLGHIPDRGIEPALKAGITLTVFDEAGVEKIAEVAA 122 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G ++VDTG R+GL A+ F + + +H A AD+ Sbjct: 123 RTGRRARLHIKVDTGMGRIGLWEDAAVPFAERWARDPRVTVEGLFTHFATADEMDKSYAV 182 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q RF ++ + A+S+ + P + + R GIS+YG S Sbjct: 183 EQHGRFLRVLQQLQDRGIRIPVVHCANSAAAIDLPEWSHGMIRLGISMYGYYPSAQVSRV 242 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ +T + RI+ +++ AG +SYG ++ + IA IGYADGY LS Sbjct: 243 RVRLRPALTLKTRIVHLKRPPAGTGISYGKTAMVSGNQWIATLPIGYADGYSRQLSNR-- 300 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G ++G VP++G++ MD TM D+T ++ ++VGD + ++G +I +D Sbjct: 301 ---------GAALVRGRRVPVIGRVCMDQTMLDVTSAMPVKVGDEVVLYGKQGNEEIHVD 351 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +VA GT +Y++ +G R + Y Sbjct: 352 EVADLLGTISYEITCMLGHRVPRLY 376 >gi|148550379|ref|YP_001270481.1| alanine racemase [Pseudomonas putida F1] gi|148514437|gb|ABQ81297.1| alanine racemase [Pseudomonas putida F1] Length = 357 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A + +L G + +I + +L V+ S+ QL K Sbjct: 60 IEEALELRAAGINAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEKT-PLHKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ D +++SH A AD+ + + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P RPG+ LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + +R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFVSSRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD VG ++++G + +VA +GT Y + Sbjct: 287 LVAGKRTHLIGRVSMDMLSIDLTDVPQATVGSPVELWGKQVLASEVAAQAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-KRVPRDY 354 >gi|239618030|ref|YP_002941352.1| alanine racemase [Kosmotoga olearia TBF 19.5.1] gi|239506861|gb|ACR80348.1| alanine racemase [Kosmotoga olearia TBF 19.5.1] Length = 372 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 154/379 (40%), Gaps = 24/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L+IDL A K N + AVVK NAYG G I+ A +G+ V Sbjct: 3 SRRTYLEIDLKAYKQNLEFFQRKVSPTKVMAVVKSNAYGHGAVGISKAAVESGIDMLAVA 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSH 122 +EEG++LR + I V P + + NL S+ Q+ ++ Sbjct: 63 FLEEGIELRNHGINVPILVFNYFDPEYSSLALENNLTITAYSIEQMKGIKSVLGNQIRKL 122 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + VDTG R+G S E + I SH A AD+ + Q + F Sbjct: 123 KVHVNVDTGMKRIGPSANECTSLIEYLLE-NGFSIEGIYSHFAVADEAIEQFSIEQRKAF 181 Query: 183 RTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV- 236 + + KGI+ L +S+G L + R GI+ YG + P V Sbjct: 182 ESAVKTLESKGIKIPVKHLCNSAGSLRFNREEYNYIRLGIASYGLQPSGDFVIPELKPVL 241 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ + ++ G+ VSYG R +++ +GY DGY LS Sbjct: 242 TWKSAVSYVKTLKPGDSVSYGRTFIADRKMVVSTVPVGYGDGYSRGLSNR---------- 291 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLDDVALASG 351 G+ I G ILG++ MD + D+T ++GD + + G I ++++A Sbjct: 292 -GEVLIGGKRCKILGRVCMDQFVVDVTHLHKKPKIGDEVVLIGSQGEERITVEEIADLLN 350 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T NY++ I R + YT Sbjct: 351 TINYEITCTITARVPRLYT 369 >gi|37681162|ref|NP_935771.1| alanine racemase [Vibrio vulnificus YJ016] gi|81859828|sp|Q7MH94|ALR_VIBVY RecName: Full=Alanine racemase gi|37199913|dbj|BAC95742.1| alanine racemase [Vibrio vulnificus YJ016] Length = 372 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 174/374 (46%), Gaps = 18/374 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + IDL AL++N + + +++ AVVK N YG G +A G F Sbjct: 12 MNYMKAATACIDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAKHAV--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR I +L G + + + TN I + + + Sbjct: 70 GVARIEEALQLRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQLRDLENAELET 129 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +RLG+ ++ F + + +SH CAD+ ++ + Q+ Sbjct: 130 PVVVWLKIDSGMHRLGVRPEQYQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQI 189 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 E F +L KG E SLA+S+G+L + RPGI +YG + +K + V+ Sbjct: 190 ELFLSLTRGCKG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVM 248 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ +I +R AGE V YG RD+ + V AIGY DGYP T Sbjct: 249 TLKSHLIAVRDVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRTAPN----------- 297 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G VPI G+++MDM D+ + VGD ++G D+ +DVA GT Y+ Sbjct: 298 GTPVLVNGRKVPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYE 357 Query: 357 LLVRIGTRYAKFYT 370 L+ ++ +R Y+ Sbjct: 358 LVTKLTSRVEMSYS 371 >gi|73763193|gb|AAZ83976.1| alanine racemase [Pseudomonas putida] Length = 357 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 172/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + +L V+ S+ QL + Sbjct: 60 IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIERTQ-LHKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ + +++SH A AD+ + + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P RPG+ LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAERLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD VG ++++G + +VA +GT Y + Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPEATVGSPVELWGKHVLAREVAAHAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-KRVPRDY 354 >gi|313501244|gb|ADR62610.1| DadX [Pseudomonas putida BIRD-1] Length = 357 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + L V+ S+ QL K Sbjct: 60 IEEALELRAAGIKAPVLLLEGFFEASELALIAEHGLWCVVHSLWQLEAIEKT-PLHKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ D +++SH A AD+ + + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYHDAYQRLLASGKVSRIVLMSHFARADELDADATAQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P RPG+ LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD VG ++ +G + +VA +GT Y + Sbjct: 287 LVAGKRTQLIGRVSMDMLSIDLTDVPQATVGSPVEFWGKQVLASEVAAHAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-KRVPRDY 354 >gi|170728531|ref|YP_001762557.1| alanine racemase [Shewanella woodyi ATCC 51908] gi|254802385|sp|B1KHY4|ALR_SHEWM RecName: Full=Alanine racemase gi|169813878|gb|ACA88462.1| alanine racemase [Shewanella woodyi ATCC 51908] Length = 358 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 175/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALKNN + ++ N+ AVVK N YG G +A L F + Sbjct: 3 PFPRAEISAQALKNNLSRLRQIAPNSSVMAVVKANGYGHGLLNVASCLTE--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR +A++ +L G + + + VI + QL S Sbjct: 61 LEEALALRAGGVKAKLVLLEGFFRQVDLTTLVEHGIDTVIHNEVQLDMLEN-ASLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G +RLG + ++ ++ + I+SH ACAD+P + + QL+ F Sbjct: 120 VWLKLDSGMHRLGFTPEQFAQVYARLEACPQVAKPINIMSHFACADEPDNPMTQEQLQVF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + KG LA+S+G L P+ RPGI+LYG + + ++H ++ + Sbjct: 180 EALTKNSKGYRT-LANSAGTLYWPDSQADWIRPGIALYGVSPVIGDLGRNHGLEPAMKLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R+ AG+ V YG D+ + V AIGY DGYP G Sbjct: 239 SQLIAVREHKAGQPVGYGCFWHAKADTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VP++G+++MDM D+ +GD + ++G ++ +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPVVGRVSMDMLTVDLGIDAKDSIGDDVVLWGKELPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|300782672|ref|YP_003762963.1| alanine racemase [Amycolatopsis mediterranei U32] gi|299792186|gb|ADJ42561.1| alanine racemase [Amycolatopsis mediterranei U32] Length = 371 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 22/374 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+ IDL A+++N + A + + AVVK +AYG G +A A AG S Sbjct: 6 PRARVDIDLDAIRHNLTLLGARAPGSEVMAVVKADAYGHGALPVARAAVEAGATWLGTCS 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR AR+F + ++ SS+ +L S G Sbjct: 66 LGEALALREAGITARLFSWLDTPDVDFAPGVENDIDLAASSLGELRRISAAAKPGTPARV 125 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R G + + + ++ I SHLACAD+P +Q +RF Sbjct: 126 HLKIDTGLSRNGCPPAAWAELVEAAAAEPRVEVVAIWSHLACADEPEHPSIDLQAKRFAE 185 Query: 185 LI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + LA+S+ +L P+ HF + RPGI++YG + ++ +T + Sbjct: 186 AYDTARAAGLDPMRHLANSAALLTRPDLHFDIVRPGIAMYGLNPVP-QPEDLRPAMTFRS 244 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + L+++ AGE VSYG +R++ +A+ GYADG P +LSG Sbjct: 245 AVALVKRIEAGESVSYGHTWTASRETNLALVPAGYADGVPRSLSGRMD-----------V 293 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356 + G P+ G++ MD + D D VGD + +FG + + A GT +Y+ Sbjct: 294 LLGGQRRPVAGRVCMDQLVVDCGD-YEPSVGDEVVLFGAGAHGEPTAREWADKLGTIDYE 352 Query: 357 LLVRI-GTRYAKFY 369 ++ + R + Y Sbjct: 353 IVTSMYRPRVRRRY 366 >gi|308094758|ref|ZP_05891769.2| alanine racemase [Vibrio parahaemolyticus AN-5034] gi|308095056|ref|ZP_07663149.1| alanine racemase [Vibrio parahaemolyticus Peru-466] gi|308125857|ref|ZP_07663541.1| alanine racemase [Vibrio parahaemolyticus K5030] gi|308126480|ref|ZP_05910422.2| alanine racemase [Vibrio parahaemolyticus AQ4037] gi|308087451|gb|EFO37146.1| alanine racemase [Vibrio parahaemolyticus Peru-466] gi|308089684|gb|EFO39379.1| alanine racemase [Vibrio parahaemolyticus AN-5034] gi|308109426|gb|EFO46966.1| alanine racemase [Vibrio parahaemolyticus AQ4037] gi|308113312|gb|EFO50852.1| alanine racemase [Vibrio parahaemolyticus K5030] Length = 361 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL+AL++N + A + ++ AVVK N YG G +A F Sbjct: 1 MSYMKAAKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ +F +SH CAD+ S + Q Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235 +E F +L S +G E SLA+S+G+L P + RPGI +YG + +K Q V Sbjct: 178 IELFMSLTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ GE V YGG RD+ + V A+GY DGYP + Sbjct: 237 MTLKSHLIAVREVKQGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ++ G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y Sbjct: 287 -GTPVWVNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAY 345 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ R YT Sbjct: 346 ELVTKLTPRVEMEYT 360 >gi|145298771|ref|YP_001141612.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851543|gb|ABO89864.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449] Length = 367 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 169/369 (45%), Gaps = 21/369 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M++ + ID+ AL +N+ + + +++ AV+K NAYG G ++A L + Sbjct: 1 MNT---VTASIDVDALHHNFAVVRRHAPHSKIIAVLKANAYGHGLLQVANTLSQ--ADAY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE + LR I VL G + + + + + Sbjct: 56 GVARIEEALVLRANAITKPILVLGGFFSAEALPLLAAHDLQTTIHTWDQLALLEQADLPT 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQL 179 L++DTG NRLGL Q+ F N K ++H + +D+ S Q+ Sbjct: 116 PITVWLKLDTGMNRLGLRAQDIPAFVERLANCKNVVQPFHLMTHFSQSDEQDSQATPQQI 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 E F L + +G E ++A+S+GIL P+ RPGI LYG + + H ++ V+ Sbjct: 176 EEFNALTARMQG-ERAMANSAGILAWPDSRSDWIRPGIMLYGASPFGGQLASDHDLRPVM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++++I IR GE V YGG D+ + V A+GY DGYP Sbjct: 235 TLKSQLIAIRPCEQGESVGYGGHWVAHHDTTLGVVAVGYGDGYPRMA-----------PQ 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G I G VPI+G+++MDM D+ + GD + ++G + ++ VA GT Y+ Sbjct: 284 GTPVLINGRRVPIVGRVSMDMITVDLGPGAGDKTGDEVILWGDGLPVEQVAEKIGTIPYE 343 Query: 357 LLVRIGTRY 365 LL R+ +R Sbjct: 344 LLTRLTSRV 352 >gi|78485703|ref|YP_391628.1| alanine racemase [Thiomicrospira crunogena XCL-2] gi|78363989|gb|ABB41954.1| alanine racemase [Thiomicrospira crunogena XCL-2] Length = 356 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 161/366 (43%), Gaps = 18/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I L AL+ N + + +++ A++K N YG G E++A L + V Sbjct: 4 RPVKALIHLNALQQNLRQVKTFAPDSKVLAIIKSNGYGHGIERVAGQLAQ--ADGYGVAC 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR I +L G+ + I L + S QL + S Sbjct: 62 IDEAIVLRQKGFLHPIVLLEGLFSEVELAIAIQHRLEFAVHSFLQLEWLKN-SSIKTPLN 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG E ++SH A AD+ S QL+ F Sbjct: 121 IWLKLDTGMHRLGFQAHEIQKVIAELKALSAPVNIHLMSHFASADE-SESFTRQQLQVFN 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 ++ S+A+S+ + P H RPGI LYG ++ V+T + II Sbjct: 180 Q-VAETLKCPRSIANSAAVQWFPESHLDWVRPGIMLYGACATSETVPGLKPVMTLMSEII 238 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ GE V YG + R SLIAV AIGY DGYP G I+ Sbjct: 239 SLKWIETGETVGYGQTWQAPRRSLIAVVAIGYGDGYPRHA-----------PSGTPVLIQ 287 Query: 304 GYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +P++G+++MDM D+T+ + +GD ++G + +D +A A GT Y+LL + Sbjct: 288 GKKMPLVGRVSMDMITVDVTELADKVAIGDEAVLWGQGLPVDVIANACGTIGYELLCGVT 347 Query: 363 TRYAKF 368 R + Sbjct: 348 QRVPRI 353 >gi|326423831|ref|NP_760315.2| alanine racemase [Vibrio vulnificus CMCP6] gi|34098535|sp|Q8DCL0|ALR1_VIBVU RecName: Full=Alanine racemase 1 gi|319999201|gb|AAO09842.2| alanine racemase [Vibrio vulnificus CMCP6] Length = 358 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 106/364 (29%), Positives = 171/364 (46%), Gaps = 18/364 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL AL++N + + +++ AVVK N YG G +A G F V +EE ++ Sbjct: 8 IDLVALQHNLQLIKQQAPHSKLMAVVKANGYGHGLRHVAKHAV--GADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + + TN I + + + L++D+ Sbjct: 66 LRACGVVKPILLLEGFYSSGDLPVLVTNNIQTVVHCEEQLRDLENAELETPVVVWLKIDS 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++ F + + +SH CAD+ ++ + Q+E F +L Sbjct: 126 GMHRLGVRPEQYQAFVERLHQCPNVAKPLRYMSHFGCADEMNNEMTPKQIELFLSLTRGC 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILIR 246 KG E SLA+S+G+L + RPGI +YG + +K + V+T ++ +I +R Sbjct: 186 KG-ERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGYKPVMTLKSHLIAVR 244 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE V YG RD+ + V AIGY DGYP T G + G Sbjct: 245 DVKAGESVGYGATWISERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNGRK 293 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 VPI G+++MDM D+ + VGD ++G D+ +DVA GT Y+L+ ++ +R Sbjct: 294 VPIAGRVSMDMLTVDLGPDATDHVGDEAILWGADLPAEDVAQHIGTIAYELVTKLTSRVE 353 Query: 367 KFYT 370 Y+ Sbjct: 354 MSYS 357 >gi|330957316|gb|EGH57576.1| alanine racemase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 357 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A L A F V Sbjct: 2 RPARALIDLQALRHNYQLARESSGG-KALAVIKADAYGHGAVRVAQTL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHSTWQLEAIERAHPGKPLTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E + ++++H ACAD+ +S ++ Q F Sbjct: 120 WLKLDTGMHRVGLHPSEYRAAYQRLLSTGNVAKIVLMTHFACADELNSPSSAEQCAVFEA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEAR 241 E SL +S ++ P +R GI LYG T +Q V+T E++ Sbjct: 180 TCQGL-AAETSLKNSPAVMGWPKIPGDWSRAGIMLYGATPFDQAQPLAERLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R AGE V YG + S I V A+GYADGYP G Sbjct: 239 IISVRDLPAGEAVGYGATFVTDKPSRIGVVAMGYADGYPRHA-----------PTGTPVQ 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+T+ +G ++++G + DVA +GT Y + + Sbjct: 288 IDGQRSRLVGRVSMDMLCVDLTELPQAGIGSRVELWGKAVLASDVAAQAGTIPYQIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRVYS 355 >gi|153840096|ref|ZP_01992763.1| alanine racemase [Vibrio parahaemolyticus AQ3810] gi|149746306|gb|EDM57372.1| alanine racemase [Vibrio parahaemolyticus AQ3810] Length = 361 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL+AL++N + A + ++ AVVK N YG G +A F Sbjct: 1 MSYMKAAKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ +F +SH CAD+ S + Q Sbjct: 118 TPVVVWLKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTV 235 +E F +L S +G E SLA+S+G+L P + RPGI +YG + +K Q V Sbjct: 178 IELFMSLTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ GE V YGG RD+ + V A+GY DGYP + Sbjct: 237 MTLKSHLIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ++ G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y Sbjct: 287 -GTPVWVNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAY 345 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ R YT Sbjct: 346 ELVTKLTPRVEMEYT 360 >gi|218708338|ref|YP_002415959.1| alanine racemase [Vibrio splendidus LGP32] gi|254802395|sp|B7VI70|ALR_VIBSL RecName: Full=Alanine racemase gi|218321357|emb|CAV17307.1| Alanine racemase 1 [Vibrio splendidus LGP32] Length = 358 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 171/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL AL++N + + + + + + +VVK N YG G IA ++ F V +E Sbjct: 4 ATASIDLNALEHNLNQIKSKAPHCKVMSVVKANGYGHGLLHIAKHSKSS--DAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + I TN I + + + L Sbjct: 62 EALQLRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQLSALENAELETPVVVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VD+G +RLG ++ +F + + +SH CAD+ Q E F +L Sbjct: 122 KVDSGMHRLGARPEQYQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTELFLSL 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 +G E SLA+S+G+L P+ H RPGI YG + +K V+T + + Sbjct: 182 TDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFADKSAQDLGFYPVMTLTSHL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE V YGG RD+ + V AIGY DGYP T G F+ Sbjct: 241 IAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVFV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI G+++MDM D+ + +VGD ++G D+ ++VA GT Y+L+ ++ Sbjct: 290 NGRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELVTKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|209693985|ref|YP_002261913.1| alanine racemase [Aliivibrio salmonicida LFI1238] gi|259710062|sp|B6ELK6|ALR_ALISL RecName: Full=Alanine racemase gi|208007936|emb|CAQ78068.1| alanine racemase [Aliivibrio salmonicida LFI1238] Length = 358 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 107/365 (29%), Positives = 169/365 (46%), Gaps = 18/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +ID++AL +N + + N++ AVVK N YG G IA GV F V +EE Sbjct: 6 AQIDMSALAHNLQKIKQQAPNSKLLAVVKANGYGHGLLNIAKGA--HGVDAFGVARIEEA 63 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR ++ +L G + + I N I + + L+V Sbjct: 64 LQLRAGGIVKQVLLLEGFYSAGDLPILVANNIQTAVHCKEQLEALENADLEGPVVVWLKV 123 Query: 129 DTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 D+G +RLG+ +E ++ K + Q +SH CAD+ + + Q+E F +L Sbjct: 124 DSGMHRLGIRPEEYQEYVDRLHACKNVAQPLRYMSHFGCADELDNPTTNEQIETFMSLTD 183 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 +G E SLA+S+G+L P+ RPGI +YG + K +T + +I Sbjct: 184 GCQG-ERSLAASAGLLAWPDSQLDWVRPGIIMYGVSPFSEKTAQDLGYLPTMTLTSHLIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ AGE V YG RD+ I V AIGY DGYP+ G + G Sbjct: 243 VREVKAGESVGYGAMWTSERDTKIGVIAIGYGDGYPIAAPN-----------GTPVLVNG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+++MDM D+ VGD ++G D+ ++VA GT Y+L+ ++ +R Sbjct: 292 RKVPVAGRVSMDMLTVDLGPDAEDNVGDEAILWGRDLPAEEVAEHIGTIAYELVTKLTSR 351 Query: 365 YAKFY 369 Y Sbjct: 352 VQMQY 356 >gi|262172532|ref|ZP_06040210.1| alanine racemase biosynthetic [Vibrio mimicus MB-451] gi|261893608|gb|EEY39594.1| alanine racemase biosynthetic [Vibrio mimicus MB-451] Length = 364 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 180/375 (48%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + +++ AVVK N YG G IA G F Sbjct: 1 MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ + Q Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTAEQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + KS Q V Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 237 MTLKSHVIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ + VGD ++G ++ +++VA GT Y Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGY 345 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ +R Y+ Sbjct: 346 ELVTKLTSRVEMSYS 360 >gi|261210391|ref|ZP_05924685.1| alanine racemase biosynthetic [Vibrio sp. RC341] gi|260840449|gb|EEX67015.1| alanine racemase biosynthetic [Vibrio sp. RC341] Length = 364 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 178/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + +++ AVVK N YG G IA G F Sbjct: 1 MNYMKAATAYINLDALQHNLQRVKQQAPDSKIMAVVKANGYGHGLRHIARYAM--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQTQ-LE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++D+G +RLG+ ++ DF + + +SH CAD+ + Q Sbjct: 118 TPVMVWLKIDSGMHRLGVRPEQYQDFVTRLHQCDNVAKPLRYMSHFGCADELDKSTTAAQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + KS Q V Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAAQLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R AGE V YGG RD+ I V AIGY DGYP T Sbjct: 237 MTLKSHLIAVRDVKAGESVGYGGTWISQRDTKIGVIAIGYGDGYPRTAPN---------- 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ S VGD ++G ++ +++VA GT Y Sbjct: 287 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEASDCVGDEAMLWGGELPVEEVAAHIGTLGY 345 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ +R Y+ Sbjct: 346 ELVTKLTSRVEMSYS 360 >gi|330977319|gb|EGH77272.1| alanine racemase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 357 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 165/369 (44%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AVVK +AYG G ++A AL + F V Sbjct: 2 RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-ESQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A + +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLWTVVHATWQLEAIEQARLGKPITV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH + AD+ +S + QL F T Sbjct: 120 WLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARIVLMSHSSRADELNSGCSDEQLAVFET 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 E SL +S +L P +RPGI LYG T + +Q V+T E++ Sbjct: 180 F-RKGLAAETSLKTSPAVLGWPQIPSDWSRPGIMLYGATPFDQVHPLADRLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ AGE V YG R S I V A+GYADGYP G Sbjct: 239 IISVRELPAGEPVGYGATFVCDRPSRIGVVAMGYADGYPRHA-----------PTGTPVQ 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+TD +G ++++G + +VA + T Y++ + Sbjct: 288 IDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKQVLASEVAQRAETIPYEIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|28212093|ref|NP_783037.1| alanine racemase [Clostridium tetani E88] gi|81841128|sp|Q890X1|ALR_CLOTE RecName: Full=Alanine racemase gi|28204536|gb|AAO36974.1| alanine racemase [Clostridium tetani E88] Length = 387 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 168/384 (43%), Gaps = 25/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +IDL L N + + AVVK +AYG G IAP L G Sbjct: 1 MFKHLRPVWAEIDLDKLVYNMQQIKNICKGREIIAVVKADAYGHGALDIAPILLENGATR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V + E ++LR A I VL + N+ + S S++ Sbjct: 61 LAVAVLNEAIELRRGGIDAPIMVLGFTPDSLIETSLKYNIEQTVYSYEIAKEISEVAVKS 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + +DTG R+G E++D + Q+ I SH A AD+ + Sbjct: 121 NRVAKIHIALDTGMGRIGFLPDKESIDKIYKLSKLPNIQIEGIFSHFASADEQDKTYTKL 180 Query: 178 QLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231 Q +F + + +GI+ +A+S+ I+ P H + RPGI +YG + Sbjct: 181 QFNKFLWVCNSLEERGIDIKIRHIANSAAIIDMPELHLEGVRPGIIMYGYYPSSEVNKGK 240 Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ + I+ I+ G+ +SYG + K ++S+IA +GYADGY +L Sbjct: 241 LDLKPVMSLKTTIVHIKNMEKGKYISYGREFKTEKESIIATLPVGYADGYSRSL------ 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GGK +K + P++G+I MD M D++ +++GD + + G + + ++ Sbjct: 295 ----YDKGGKIILKEQLAPLVGRICMDQCMIDVSHIEDVKIGDEVILMGENKGIKMTAEE 350 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 + GT NY++ I R + Y Sbjct: 351 IGNLLGTINYEVTCMISKRVPRVY 374 >gi|148981621|ref|ZP_01816478.1| alanine racemase [Vibrionales bacterium SWAT-3] gi|145960806|gb|EDK26141.1| alanine racemase [Vibrionales bacterium SWAT-3] Length = 358 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 114/368 (30%), Positives = 175/368 (47%), Gaps = 20/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL+AL++N + + + + +VVK N YG G IA N+ F V +E Sbjct: 4 ATASIDLSALEHNLRQIKSKAPQCKVMSVVKANGYGHGLLHIAKHSKNS--DAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E ++LR + +L G + PG I+ N+ V+ QL+ Sbjct: 62 EALQLRAGGIVQPVLLLEGFYSPGDLPILVTNNIQTVVHCEEQLSALEN-SVLESPVVVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VD+G +RLG+ ++ DF + + +SH CAD+ Q E F + Sbjct: 121 LKVDSGMHRLGVRSEQYKDFVERLHQCPNVAKPLRYMSHFGCADELDRTTTVEQTELFLS 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L +G E SLA+S+G+L P+ H RPGI YG + ++KS V+T + Sbjct: 181 LTDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFVDKSAQELGFMPVMTLTSH 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V AIGY DGYP T G F Sbjct: 240 LIAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVF 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI G+++MDM D+ +VGD ++G ++ ++VA GT Y+L+ ++ Sbjct: 289 VNGRKVPIAGRVSMDMLTVDLGPDAQDKVGDEATLWGKELPSEEVAEHIGTIAYELVTKL 348 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 349 TSRVAMEY 356 >gi|110802018|ref|YP_698177.1| alanine racemase [Clostridium perfringens SM101] gi|123146221|sp|Q0SUN0|ALR_CLOPS RecName: Full=Alanine racemase gi|110682519|gb|ABG85889.1| alanine racemase [Clostridium perfringens SM101] Length = 386 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G +E L+ + ++ + +H + +D+ Q + Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TNFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMVDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|187933435|ref|YP_001885767.1| alanine racemase [Clostridium botulinum B str. Eklund 17B] gi|187721588|gb|ACD22809.1| alanine racemase [Clostridium botulinum B str. Eklund 17B] Length = 386 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 157/379 (41%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL A+ N ++ L+ N AVVK + YG G + P L G V Sbjct: 6 RPVWAEIDLDAIAYNMRNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 + E ++LR A I +L + + + ++ + + S L Sbjct: 66 LTEAIELRNNNITAPIMILGYTPEYLFEEVVNYDIEQTVYDLEYAKKLSHLAIKFNKKAK 125 Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G E A+ +N K + I +H + +D+ + Q +F Sbjct: 126 VHIAIDTGMGRIGFIPNEKAIKDIKKIYNLKGLDVIGIFTHFSTSDETDKEYTNEQFNKF 185 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 + I + +++S I+ P + R GI LYG + Sbjct: 186 TSFIDMLSKVGVKIPIKHISNSGAIIDMPKTYLDSVRAGIILYGYYPSDEINKDNIKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T +A + +++ +SYG K R S+IA IGYADGY L Sbjct: 246 ALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLL----------- 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G K I G PI+G+I MD M D+TD I VGD + I G D + +D+A + Sbjct: 295 APGAKVIINGKFSPIIGRICMDQCMIDVTDIDDIHVGDEVIILGEDGNLKLTANDLAKSM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 355 GTINYEILCMLKYRIPRVY 373 >gi|251780841|ref|ZP_04823761.1| alanine racemase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085156|gb|EES51046.1| alanine racemase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 386 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 157/379 (41%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL A+ N ++ L+ N AVVK + YG G + P L G V Sbjct: 6 RPVWAEIDLDAIAYNMKNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 + E ++LR A I +L + + + ++ + + S L Sbjct: 66 LTEAIELRNNNVTAPIMILGYTPEYLFEEVVNYDIEQTVYDLEYAKKLSHLAIKFNKKAK 125 Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G E A+ +N K + I +H + +D+ + Q +F Sbjct: 126 IHIAIDTGMGRIGFIPNEKAIKDIKKIYNLKGLDVIGIFTHFSTSDETDKEYTNEQFNKF 185 Query: 183 RTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 + I + + +S I+ P + R GI LYG + Sbjct: 186 TSFIDMLSKVGVKIPIKHTSNSGAIIDLPKTYLDSVRAGIILYGYYPSDEINKDNIKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T +A + +++ +SYG K R S+IA IGYADGY L Sbjct: 246 ALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLL----------- 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G K I G PI+G+I MD M D+TD ++ VGD + I G D + +D+A + Sbjct: 295 APGAKVIINGQFAPIVGRICMDQCMIDVTDIDNVNVGDEVIILGEDGNLKLTANDLANSM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 355 GTINYEILCMLKYRIPRVY 373 >gi|86148219|ref|ZP_01066516.1| alanine racemase [Vibrio sp. MED222] gi|85833989|gb|EAQ52150.1| alanine racemase [Vibrio sp. MED222] Length = 358 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 172/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL AL++N + + + + + + +VVK N YG G + IA ++ F V +E Sbjct: 4 ATASIDLNALEHNLNQIKSKAPHCKVMSVVKANGYGHGLQHIAKHSKSS--DAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + I TN I + + + L Sbjct: 62 EALQLRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQLSALENAELETPVVVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VD+G +RLG ++ +F + + +SH CAD+ Q E F +L Sbjct: 122 KVDSGMHRLGARPEQYQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTELFLSL 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 +G E SLA+S+G+L P+ H RPGI YG + +K V+T + + Sbjct: 182 TDGCEG-ERSLAASAGLLAWPDSHLDWVRPGIISYGVSPFADKSAQDLGFYPVMTLTSHL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE V YGG RD+ + V AIGY DGYP T G F+ Sbjct: 241 IAVRDVKAGESVGYGGNWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVFV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI G+++MDM D+ + +VGD ++G D+ ++VA GT Y+L+ ++ Sbjct: 290 NGRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELVTKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|258622401|ref|ZP_05717424.1| alanine racemase [Vibrio mimicus VM573] gi|258585315|gb|EEW10041.1| alanine racemase [Vibrio mimicus VM573] Length = 375 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 179/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + +++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTEEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ + VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVNGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGY 356 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ +R Y+ Sbjct: 357 ELVTKLTSRVEMSYS 371 >gi|308271849|emb|CBX28457.1| Alanine racemase [uncultured Desulfobacterium sp.] Length = 386 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 164/394 (41%), Gaps = 38/394 (9%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +IDL A+ +N + + ++R AVVK NAYG G ++A + G + Sbjct: 2 ADNIIWAEIDLKAIAHNLSELRRIINPDSRLMAVVKANAYGHGSVEVARCALDNGAEYLG 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 V +EE + LR A I + P + I NL+ + S S S Sbjct: 62 VARIEEAMLLRKNNIDAPILIFGFTQPDSYENILKYNLVQTVCSYAFAESLSSFAISKNQ 121 Query: 121 SHPYALQVDTGFNRLGLSLQEALDF-------------THNSFNKKLGQLSLIISHLACA 167 +++DTG R+G+ ++ + + + I +H + A Sbjct: 122 KIKVHIKIDTGMGRIGVLPDCFRNYNKNGIKPVSALAEVESIASLSGIEAEGIYTHFSMA 181 Query: 168 DDPSSHVNSVQLERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGG 222 D + Q E F IS KGIE L +S+ I+ P H + R GIS+YG Sbjct: 182 DSYDKSFTTKQFEIFMEFISNLKLKGIEFKLKHAANSAAIIDIPKTHLDMVRAGISMYGL 241 Query: 223 TDKINKSHPMQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 + ++ +A + ++ G VSYG K T + IA +GYADGY Sbjct: 242 YPSEEVNKDRVSLLPAMSLKAIVTQVKNVSCGFNVSYGATYKTTAPTTIATVPVGYADGY 301 Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339 LS G + G PI G++ MD+TM D+ ++ GD + +FG Sbjct: 302 SRLLSSR-----------GHMLVHGQKAPIAGRVCMDLTMLDVGSITEVKQGDEVVVFGK 350 Query: 340 D----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +D++A T NY+++ I R + Y Sbjct: 351 QNGSCVTVDEIATLINTINYEIVTLISERVKRVY 384 >gi|121535443|ref|ZP_01667253.1| alanine racemase [Thermosinus carboxydivorans Nor1] gi|121305952|gb|EAX46884.1| alanine racemase [Thermosinus carboxydivorans Nor1] Length = 413 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 104/378 (27%), Positives = 167/378 (44%), Gaps = 24/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++DL A+++N + L + R AVVK NAYG G ++ A AG V Sbjct: 40 RPTHVQVDLGAIRHNIIQIRRRLKPSTRLTAVVKANAYGHGAIPVSRAALAAGADSLAVA 99 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 EEGV+LR I VL P Q ++ + +L + + L + C G Sbjct: 100 LPEEGVELRDAGFTVPILVLGLTLPEQASVLVEYDLTATVCTEDGLKALAHAARCAGKRA 159 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++ DTG R+GL+ + L F + +L + +HLA AD QL F Sbjct: 160 RVMVKADTGMGRIGLTSDKLLPFLTAAAAMPEIELRGLFTHLATADAADKSYARRQLAAF 219 Query: 183 RTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 ++ L +S+ ++ + HF RPGI++YG + +S ++ Sbjct: 220 TAILDQAAAAGILLPYISAANSATVIDIVDGHFNTVRPGIAIYGLPPSLEMHQSLDLRPA 279 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + RI+ I++ AG VSYG + + +A +GYADGY LS Sbjct: 280 MEFKTRIVYIKEVPAGFAVSYGCTYVTPQATFLATLPVGYADGYSRHLSN---------- 329 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 I G P++G+I MD T+ D+ VGD +FG +I + ++A +G Sbjct: 330 -KACVLIGGKRRPVVGRICMDQTIVDLGPVCDAAVGDEAVLFGRQGDAEITVTELAELAG 388 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+L+ I R + Y Sbjct: 389 TINYELVCGISGRVPRLY 406 >gi|73490247|dbj|BAE19803.1| alanine racemase [Pseudomonas fluorescens] Length = 357 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 104/370 (28%), Positives = 169/370 (45%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYQLAREVTG-AKALAVIKADAYGHGAVRCAEALQET-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR + I +L G E +I + + V+ S+ QL K Sbjct: 60 IEEALELRAAGIRGPILLLEGFFEADELPLIVEHDFWCVVHSLWQLEAIEKAALS-QPIT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL + +++SH A AD+ ++ QL F Sbjct: 119 VWLKLDSGMHRVGLHPADYQAAYRRLLASGKVAKIVLMSHFARADELHDSSSTEQLAIFD 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + SL +S +L P RPGI LYG T + +Q V+T E+ Sbjct: 179 KARQGLVA-QISLRNSPAVLGWPQIPSDWVRPGIMLYGATPFDEPNAVASRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG + T+ + + V A+GYADGYP G Sbjct: 238 KIISVRELPAGEPVGYGARFVTTQPTRVGVVAMGYADGYPRQA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++G ++G+++MDM D+T +G ++++G +I DVA A+ T Y + Sbjct: 287 LVEGQRSQLVGRVSMDMLAVDLTHIPQAGLGSTVELWGKNILASDVAKAADTIPYQIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRLYS 355 >gi|330964276|gb|EGH64536.1| alanine racemase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 357 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYRLARDSSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + G Sbjct: 60 IEEALELRTAGIRAPILLLEGFFEADELALIVEHDLWTVVHAVWQLEAIEQAQPGKPLTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH +CAD+ +S + Q+ F Sbjct: 120 WLKLDTGMHRVGLHPCEYRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVFEA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 E SL +S ++ P H +R GI LYG T +Q V+T E++ Sbjct: 180 ARQGLVA-EISLKNSPAVMGWPKIHSDWSRTGIMLYGATPFDQAQPLAKRLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG R I A+GYADGYP G Sbjct: 239 VISVRELPAGEAVGYGATFVSERPLRIGAVAMGYADGYPRHA-----------PTGTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+TD +G ++++G + +VA +GT Y + + Sbjct: 288 IDGQRSRLLGRVSMDMLCIDLTDLPQAGLGSRVELWGKGVLASEVATQAGTIPYQIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|168207630|ref|ZP_02633635.1| alanine racemase [Clostridium perfringens E str. JGS1987] gi|168209161|ref|ZP_02634786.1| alanine racemase [Clostridium perfringens B str. ATCC 3626] gi|168216261|ref|ZP_02641886.1| alanine racemase [Clostridium perfringens NCTC 8239] gi|170661037|gb|EDT13720.1| alanine racemase [Clostridium perfringens E str. JGS1987] gi|170712680|gb|EDT24862.1| alanine racemase [Clostridium perfringens B str. ATCC 3626] gi|182381967|gb|EDT79446.1| alanine racemase [Clostridium perfringens NCTC 8239] Length = 386 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G +E L+ + ++ + +H + +D+ Q + Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|94971247|ref|YP_593295.1| alanine racemase [Candidatus Koribacter versatilis Ellin345] gi|94553297|gb|ABF43221.1| alanine racemase [Candidatus Koribacter versatilis Ellin345] Length = 411 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 183/387 (47%), Gaps = 33/387 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++DL+AL++N+ ++++ + A+ AVVK +AYG G + A AL G + F VT Sbjct: 29 RPTWAEVDLSALRHNYRTLSSHVAPKAQICAVVKCDAYGHGALECAQALEAEGAKWFGVT 88 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121 + E + LR + RI +L G G+E+ + + + P + + + + + Sbjct: 89 NPSEALVLRRGGIKGRILLLSGFWQGEEESVLEHDFTPAVWTEGHVAWLDAAAKRFGRTK 148 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P L++DTG +RLG+ E F + + + SHLA ++ + Q+ Sbjct: 149 VPVHLKIDTGMSRLGVRWNELPTLLPKLFRARRLSIEGVWSHLASSEVVDAFDAQAQIAN 208 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG----------TDKI 226 F + K LA+S+ + + P+ + + RPG+ LYG + + Sbjct: 209 FEQALTYLADEGVKWKYRHLANSAAVAVRPSTWYDMVRPGLLLYGHCLPLTHTNHVSPDV 268 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ V++ + R++ IR+ AG+ V YG + SL+A +GY DGY LS Sbjct: 269 HLQLALKPVLSWKTRVVDIRRVPAGQGVGYGSTFTTRKPSLLATIPVGYGDGYLRALSN- 327 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 G+ ++G PI G ++MD+T+ D++ + VGD + + G D I+ Sbjct: 328 ----------KGRALVRGEYAPIAGNVSMDLTIIDVSRIPGVAVGDEVTLIGRDGEKSIE 377 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 ++++A + Y+++ I R + Y Sbjct: 378 IEELARHYQSIAYEVMCGISKRVPRKY 404 >gi|18309850|ref|NP_561784.1| alanine racemase [Clostridium perfringens str. 13] gi|20531981|sp|Q8XM22|ALR_CLOPE RecName: Full=Alanine racemase gi|18144528|dbj|BAB80574.1| alanine racemase [Clostridium perfringens str. 13] Length = 386 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G +E L+ + ++ + +H + +D+ Q + Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVIGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|110798951|ref|YP_695311.1| alanine racemase [Clostridium perfringens ATCC 13124] gi|123148891|sp|Q0TSS9|ALR_CLOP1 RecName: Full=Alanine racemase gi|110673598|gb|ABG82585.1| alanine racemase [Clostridium perfringens ATCC 13124] Length = 386 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G +E L+ + ++ + +H + +D+ Q + Sbjct: 126 VHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVIGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|300856377|ref|YP_003781361.1| alanine racemase [Clostridium ljungdahlii DSM 13528] gi|300436492|gb|ADK16259.1| alanine racemase [Clostridium ljungdahlii DSM 13528] Length = 388 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +I+L L N + GN + VVK NAYG G +++ L GV V+ Sbjct: 6 RPVWEEINLDNLVYNIRQIKLKVGNNKGLIGVVKANAYGHGALEVSQVLLENGVNRLAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++E ++LR +A I +L + I D N+ PV+ S + SK+ + + Sbjct: 66 ELDEAIELRENGIKAPIMILGIVPDTFLNDIIDYNVEPVVPSYEYASKLSKVAKNKWKTA 125 Query: 123 PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + VDTG R+G E +++ +N ++ + SH + +D+ + Q E+ Sbjct: 126 KIHVAVDTGMGRIGFQPNENSIEEIYNISKLPNIEIQSLFSHFSTSDEKDKTYSQEQFEK 185 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 ++T + + +A+S+ I+ + + RPGI +YG + ++ Sbjct: 186 YKTFYNELINRKIKISMRDIANSAAIMELQDTYCDAVRPGIIIYGYYPSDDVDRNDLSIK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +A++ ++ AG+ V YG + K R S+IA IGYADGY LSG Sbjct: 246 PVMSLKAKVAYVKTLEAGKYVGYGRKFKSERKSVIATLPIGYADGYTRMLSG-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALA 349 K + G P++G I MD M D+TD+ + VGD + + G +D+A Sbjct: 298 ---KAKVIVNGKFAPVVGNICMDQCMIDVTDAGEVNVGDEVILMGEKNGLKFDAEDIAKT 354 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++L I R + Y Sbjct: 355 IGTISYEILCSISRRVPRVY 374 >gi|188590505|ref|YP_001920878.1| alanine racemase [Clostridium botulinum E3 str. Alaska E43] gi|188500786|gb|ACD53922.1| alanine racemase [Clostridium botulinum E3 str. Alaska E43] Length = 386 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 158/379 (41%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL A+ N ++ L+ N AVVK + YG G + P L G V Sbjct: 6 RPVWAEIDLDAIAYNMKNIKKLAQNKDVIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 + E ++LR A I +L + + + ++ + + S L Sbjct: 66 LTEAIELRNNNVNAPIMILGYTPEYLFEEVVNYDIEQTVYDLEYAKKLSHLAIKFNKKAK 125 Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G E A+ ++ K + I +H + +D+ + Q +F Sbjct: 126 IHIAIDTGMGRIGFIPNEKAIKDIKEIYDLKGIDVIGIFTHFSTSDETDKEYTNEQFNKF 185 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 + I + +++S I+ P + R GI LYG + Sbjct: 186 TSFIDMLSKVGVKIPIKHISNSGAIIDLPKTYLDSVRAGIILYGYYPSDEINKDNIKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T +A + +++ +SYG K R S+IA IGYADGY L Sbjct: 246 ALTLKASLTRVQELDINSYISYGKTFKTERKSIIATLPIGYADGYSRLL----------- 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G K I G PI+G+I MD M D+TD ++ VGD + I G D + +D+A + Sbjct: 295 APGAKVIINGQFAPIVGRICMDQCMIDVTDIDNVNVGDEVIILGEDDNLKLTANDLANSM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 355 GTINYEILCMLKYRIPRVY 373 >gi|312881940|ref|ZP_07741697.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370376|gb|EFP97871.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122] Length = 360 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 173/368 (47%), Gaps = 18/368 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL ALK+N + + N++ AVVK N+YG G +A F V +E Sbjct: 4 ATAHIDLEALKHNLGRVKQQAPNSKVMAVVKANSYGHGLHYVAQHASA--ADAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + ++ + TN I + + + + S L Sbjct: 62 EALQLRASGVVKPILLLEGFYSSRDLPVLVTNSIHTVVHCEEQLYDLEKASLENPVVVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++D+G +RLG+ + F K + + +SH CAD+ + Q+E F +L Sbjct: 122 KIDSGMHRLGVRPEHFEHFVERLEACKNVAKPLRYMSHFGCADELDKPITQKQIELFLSL 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 G E SLA+S+G+L P+ + RPGI LYG + NK + V+T ++ + Sbjct: 182 TKGCLG-ERSLANSAGVLAWPDSQLEWVRPGIILYGVSPLPNKTATDLGFKPVMTLKSHL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R +GE V YGG RD+ + V AIGY DGYP G + Sbjct: 241 IAVRTVKSGESVGYGGNWTSDRDTKVGVIAIGYGDGYPRMAPN-----------GTPVLV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VP+ G+++MDM D+ +VGD ++G + +++VA GT Y+L+ ++ Sbjct: 290 NGRKVPMAGRVSMDMLTVDLGPDAKDKVGDEAILWGNGLDVEEVAHHIGTIAYELVTKLT 349 Query: 363 TRYAKFYT 370 +R Y+ Sbjct: 350 SRVDMEYS 357 >gi|28899508|ref|NP_799113.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633] gi|34098474|sp|Q87L78|ALR1_VIBPA RecName: Full=Alanine racemase 1 gi|28807744|dbj|BAC60997.1| alanine racemase, biosynthetic [Vibrio parahaemolyticus RIMD 2210633] Length = 358 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 108/369 (29%), Positives = 177/369 (47%), Gaps = 20/369 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL+AL++N + A + ++ AVVK N YG G +A F V +E Sbjct: 4 AKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 62 EALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLETPVVVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG+ ++ +F +SH CAD+ S + Q+E F + Sbjct: 121 LKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMS 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 L S +G E SLA+S+G+L P + RPGI +YG + +K Q V+T ++ Sbjct: 181 LTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSH 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YGG RD+ + V A+GY DGYP + G + Sbjct: 240 LIAVREVKQGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN-----------GTPVW 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y+L+ ++ Sbjct: 289 VNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKL 348 Query: 362 GTRYAKFYT 370 R YT Sbjct: 349 TPRVEMEYT 357 >gi|89896768|ref|YP_520255.1| hypothetical protein DSY4022 [Desulfitobacterium hafniense Y51] gi|219667399|ref|YP_002457834.1| alanine racemase [Desulfitobacterium hafniense DCB-2] gi|89336216|dbj|BAE85811.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537659|gb|ACL19398.1| alanine racemase [Desulfitobacterium hafniense DCB-2] Length = 370 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 166/381 (43%), Gaps = 25/381 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + +I+L AL+ N+ + AL+ + +VK +AYG G + A Y G + F Sbjct: 1 MENRRPVWTEINLQALQRNYDRIQALT-ESEIMPIVKADAYGHGALQAVEAFYERGARRF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V + E ++LR P ++ ++ + + + ++I + + Q +K G Sbjct: 60 GVALLNEALELRRAYPDIKVMLIGSLPEESIETVVKEDIICGVYQLDQAVILAKEAERQG 119 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G ++ + + + I +H A AD QL Sbjct: 120 KKAVIHLKVDTGMGRIGFREEDWEELFGCT-KLPGLYIEGIYTHFATADHSDLRFAREQL 178 Query: 180 ERFRTLISHY--KGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232 +F + +GI + ++ L P H + RPGI LYG + + Sbjct: 179 RKFLVMCDKIKAQGIHIPIRHAANSGALLQLPEAHLDMVRPGIILYGLPPSQHVGNDLGL 238 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ +A+I I+ GE +SYG + + +A +GYADG LS Sbjct: 239 EPVLSWKAKISHIKVVPQGETISYGRTFRTAYPTRVATIPLGYADGLRRNLSN------- 291 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 G+ IKG ++G++ MD TM D+T ++VGD + + G I ++A Sbjct: 292 ----KGEVLIKGRRTTMIGRVCMDQTMLDVTKIPEVQVGDVVTLLGMDGYERIDATEMAG 347 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY+++ I R + Y Sbjct: 348 WLDTINYEIVCGISKRVPRVY 368 >gi|330876475|gb|EGH10624.1| alanine racemase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 355 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 162/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYRLARDSSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLGAIEQAQPGKPLTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH +CAD+ +S + Q+ F Sbjct: 120 WLKLDTGMHRVGLHPSEYRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVFEA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEAR 241 E SL +S ++ P H +R GI LYG T +Q V+T E++ Sbjct: 180 ARQGLVA-ETSLKNSPAVMGWPKIHSDWSRTGIMLYGATPFDQAQPLAERLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AG+ + YG R I A+GYADGYP G Sbjct: 239 VISVRELPAGDALGYGATFVSERPLRIGAVAMGYADGYPRHA-----------PTGTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+TD +G ++++G + +VA +GT Y + + Sbjct: 288 IDGQRSRLLGRVSMDMLCVDLTDLPQAGLGSRVELWGKGVLASEVATQAGTIPYQIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|295402565|ref|ZP_06812514.1| alanine racemase [Geobacillus thermoglucosidasius C56-YS93] gi|294975413|gb|EFG51042.1| alanine racemase [Geobacillus thermoglucosidasius C56-YS93] Length = 381 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 147/375 (39%), Gaps = 26/375 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +IDL A+ N + L + R AVVK NAYG G ++A AG V + Sbjct: 6 TWAEIDLDAIYYNVSQLKNFLPNDVRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFL 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR A I VL P I + + + + S + Sbjct: 66 DEALALRKGGIDAPILVLGASRPSDINIAAKHRITLTVFQAEWIEQAADFYSETAPVLFH 125 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG RLG+ + E L + +H A AD+ ++ S Q + F Sbjct: 126 LKMDTGMGRLGVKEETETKRLIEQIDRHPYFSLEGVYTHFATADEINTGYFSFQYDNFLR 185 Query: 185 LISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV----TA 238 ++ +S+ L P+ F + R GIS+YG + + + + Sbjct: 186 MLEWLPYKPPLIHCGNSATTLRFPDKVFNMVRFGISMYGLSPSPEIKQYLPYTLKEAFSL 245 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +R++ ++K GE VSYG + + IGYADG+ L Sbjct: 246 HSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGWLRKLQNF------------ 293 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + G PI+G+I MD M + L + G + + G I +DDVA T N Sbjct: 294 HVLVNGEKAPIIGRICMDQLMVRLPKQLPV--GTKVTLIGRQGDKYISVDDVAQYLDTIN 351 Query: 355 YDLLVRIGTRYAKFY 369 Y++ I R + + Sbjct: 352 YEIPCTISYRVPRIF 366 >gi|328472359|gb|EGF43229.1| alanine racemase [Vibrio parahaemolyticus 10329] Length = 358 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 108/369 (29%), Positives = 177/369 (47%), Gaps = 20/369 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL+AL++N + A + ++ AVVK N YG G +A F V +E Sbjct: 4 AKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 62 EALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ-ADLETPVVVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG+ ++ +F +SH CAD+ S + Q+E F + Sbjct: 121 LKIDSGMHRLGVRPEQYDEFISRLKTCPNVAKPLRYMSHFGCADELDSSITPQQIELFMS 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 L S +G E SLA+S+G+L P + RPGI +YG + +K Q V+T ++ Sbjct: 181 LTSGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGYQPVMTLKSH 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YGG RD+ + V A+GY DGYP + G + Sbjct: 240 LIAVREVKKGESVGYGGIWTSERDTKVGVIAVGYGDGYPRSAPN-----------GTPVW 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI G+++MDM D+ + +V D ++G ++ +++VA GT Y+L+ ++ Sbjct: 289 VNGRTVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKELPVEEVANHIGTIAYELVTKL 348 Query: 362 GTRYAKFYT 370 R YT Sbjct: 349 TPRVEMEYT 357 >gi|312112523|ref|YP_003990839.1| alanine racemase [Geobacillus sp. Y4.1MC1] gi|311217624|gb|ADP76228.1| alanine racemase [Geobacillus sp. Y4.1MC1] Length = 381 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 147/375 (39%), Gaps = 26/375 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +IDL A+ N + L + R AVVK NAYG G ++A AG V + Sbjct: 6 TWAEIDLDAIYYNVSQLKNFLPNDVRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFL 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR A I VL P I + + + + S + Sbjct: 66 DEALALRKGGIDAPILVLGASRPSDINIAAKHRITLTVFQAEWIEQAADFYSETAPVLFH 125 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG RLG+ + E L + +H A AD+ ++ S Q + F Sbjct: 126 LKMDTGMGRLGVKEETETKRLIEQIDRHPYFSLEGVYTHFATADEINTGYFSFQYDNFLR 185 Query: 185 LISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV----TA 238 ++ +S+ L P+ F + R GIS+YG + + + + Sbjct: 186 MLEWLPYKPPLIHCGNSATTLRFPDKVFNMARFGISMYGLSPSPEIKQYLPYTLKEAFSL 245 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +R++ ++K GE VSYG + + IGYADG+ L Sbjct: 246 HSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGWLRKLQNF------------ 293 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + G PI+G+I MD M + L + G + + G I +DDVA T N Sbjct: 294 HVLVNGEKAPIIGRICMDQLMVRLPKQLPV--GTKVTLIGRQGDKYISVDDVAQYLDTIN 351 Query: 355 YDLLVRIGTRYAKFY 369 Y++ I R + + Sbjct: 352 YEIPCTISYRVPRIF 366 >gi|153803236|ref|ZP_01957822.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-3] gi|124121216|gb|EAY39959.1| alanine racemase, biosynthetic [Vibrio cholerae MZO-3] Length = 376 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 113/375 (30%), Positives = 173/375 (46%), Gaps = 21/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 12 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSV 177 L+VD+G +RLG+ E ++ +SH CAD+ Sbjct: 129 TPVMVWLKVDSGMHRLGVVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVE 188 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQT 234 Q E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q Sbjct: 189 QTELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQP 247 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 VMTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN--------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 G + G VPI G+++MDM D+ VGD ++G ++ +++VA GT Sbjct: 299 --GTPVVVNGRRVPIAGRVSMDMLTVDLGPDACDRVGDEAMLWGNELPVEEVAAHIGTIG 356 Query: 355 YDLLVRIGTRYAKFY 369 Y+L+ ++ +R Y Sbjct: 357 YELVTKLTSRVEMSY 371 >gi|330812573|ref|YP_004357035.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380681|gb|AEA72031.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 357 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 103/370 (27%), Positives = 170/370 (45%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AV+K +AYG G + A AL + F V Sbjct: 2 RPARALIDLQALRHNYQLAREITG-AKALAVIKADAYGHGAVRCAEALQDT-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR + I +L G + +I + + V+ S+ QL K Sbjct: 60 IEEALELRAGGIRGPILLLEGFFEASELPLIVEHDFWCVVHSLWQLEAIEKAALS-QPIT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL + +++SH A AD+ ++ QL F Sbjct: 119 VWLKLDSGMHRVGLHPADYQAAYRRLLASGKVAKIVLMSHFARADELHDPSSTEQLAIFD 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + SL +S +L P RPGI LYG T + +Q V+T E+ Sbjct: 179 KARQGLVA-QISLRNSPAVLGWPQIPSDWVRPGIMLYGATPFDEPNAVASRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG + T+ + + V A+GYADGYP G Sbjct: 238 KIICVRELPAGEPVGYGARFVTTQPTRVGVVAMGYADGYPRQA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T+ +G ++++G +I DVA A+ T Y + Sbjct: 287 LVDGQRSQLVGRVSMDMLCVDLTNVPQAGLGSTVELWGKNILASDVAKAADTIPYQIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRLYS 355 >gi|268591426|ref|ZP_06125647.1| alanine racemase [Providencia rettgeri DSM 1131] gi|291313080|gb|EFE53533.1| alanine racemase [Providencia rettgeri DSM 1131] Length = 360 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 110/364 (30%), Positives = 181/364 (49%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + ++ N++ AVVK NAYG G + A+ V F V + E + Sbjct: 8 INRRALRHNLQRVKEIAPNSQMIAVVKANAYGHGLVGVGQAVEEL-VDGFGVARLNEALL 66 Query: 71 LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR + I +L G ++ + + VI + QL +++D Sbjct: 67 LRQHGVIKPIVLLEGFFEQSDLLLMAEHQIDTVIHCIEQLEMLEATK-LPYPLKVWMKLD 125 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 TG +RLG+ ++A F +++ I+SH AD P Q+ F+ I Sbjct: 126 TGMHRLGILPKDAEGFYQRLQRCQQVQLPINIVSHFCQADAPHLPTTEKQIACFKQFIDG 185 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILI 245 +G E S+A+S+GILL P H+ RPGI +YG + + K + V+T ++ +I + Sbjct: 186 KEG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAEDFGLLPVMTLKSTLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AG+ V YG +D+L+ V AIGY DGYP V G I G Sbjct: 245 REHAAGQCVGYGETWCSDKDTLLGVVAIGYGDGYPRN-----------VPSGTPVLINGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G+I+MDMT+ D+ + +VGD + ++G + ++++A +G NY+LL ++ +R Sbjct: 294 KVPIVGRISMDMTVVDLGLNADDKVGDDVILWGNQLPVEEIATQTGIINYELLTKLTSRV 353 Query: 366 AKFY 369 A Y Sbjct: 354 AMEY 357 >gi|302038070|ref|YP_003798392.1| alanine racemase [Candidatus Nitrospira defluvii] gi|300606134|emb|CBK42467.1| Alanine racemase [Candidatus Nitrospira defluvii] Length = 387 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 109/377 (28%), Positives = 166/377 (44%), Gaps = 23/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DL AL +N + L+ + AVVK NAYG G ++ L V F V + Sbjct: 8 PPTSVSVDLNALGHNLAHVRRLAPRSEVLAVVKANAYGHGALELTRTLQQLAVHRFGVAT 67 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHP 123 V+EG+ LR I V+ P Q + L PV+ S F + + + Sbjct: 68 VDEGIVLRQAGIHDPILVMGPTVPAQFPDLIAHRLTPVLYRSDMVQAFAAAVPPKAAPYS 127 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++++TG RLG+ E D + +L +++HLA AD+ + QL F+ Sbjct: 128 VHVKIETGMGRLGVHPPEMPDLAAMPAFRATLRLEGLMTHLADADNTKTTHTETQLTEFQ 187 Query: 184 TLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVV 236 + A+S+GI+ P + L RPGI LYG N++ + ++ Sbjct: 188 QTLDTLRQGGLSCPLIHAANSAGIIQYPASLYTLVRPGIMLYGYHTLSNETPAPELRPIL 247 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +A I + AG+ VSY R S IAV +GYADGY LS Sbjct: 248 TWKATIAHLHNIQAGDSVSYNRTFIAARRSKIAVLPVGYADGYNRLLSNR---------- 297 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G I G VP++G++ MDMTM D+TD + +G + G + D+A T Sbjct: 298 -GMVLIGGRRVPVVGRVCMDMTMVDVTDVPGVHIGQEAILIGQQGQERLTAADLAAWQQT 356 Query: 353 TNYDLLVRIGTRYAKFY 369 Y++L IG R + Y Sbjct: 357 IPYEVLCAIGQRVPRHY 373 >gi|169346950|ref|ZP_02865898.1| alanine racemase [Clostridium perfringens C str. JGS1495] gi|169297009|gb|EDS79133.1| alanine racemase [Clostridium perfringens C str. JGS1495] Length = 386 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEIDLDIIANNMKEIRTLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G +E L+ + ++ + +H + +D+ Q + Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|24375404|ref|NP_719447.1| alanine racemase [Shewanella oneidensis MR-1] gi|81845755|sp|Q8EAI6|ALR_SHEON RecName: Full=Alanine racemase gi|24350242|gb|AAN56891.1|AE015824_2 alanine racemase, biosynthetic [Shewanella oneidensis MR-1] Length = 358 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 180/366 (49%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I +AL+NN + + +++ AVVK N YG G +A L F + Sbjct: 3 PFPRAEISSSALQNNLAVLRQQASSSQVMAVVKANGYGHGLLNVAKCL--NNADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR + +AR+ +L G ++ + ++ V+ Q+ + + Sbjct: 61 LEEALELRAGSVKARLLLLEGFFRSTDLPLLVEHDIDTVVHHESQIEMLEQ-ATLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG++ ++ + + K + + +++H ACAD+P +H VQ++ F Sbjct: 120 VWLKVDSGMHRLGVTPEQFSAVYARLTACKNVAKPIHLMTHFACADEPDNHYTQVQMQTF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G LA+S+G L P RPGI++YG + +H + + Sbjct: 180 NQLTADLPGFRT-LANSAGALYWPKSQGDWIRPGIAMYGVSPVTGDCGANHGLIPAMNLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R+ A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SRLIAVREHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +I G VPI+G+++MDM D+ + +VGD + ++G + +++VA GT Y+L+ Sbjct: 288 VWINGRRVPIVGRVSMDMLTVDLGHDATDQVGDDVLLWGQALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|150018925|ref|YP_001311179.1| alanine racemase [Clostridium beijerinckii NCIMB 8052] gi|149905390|gb|ABR36223.1| alanine racemase [Clostridium beijerinckii NCIMB 8052] Length = 387 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 160/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL A+ N ++ L + AVVK + YG G + P L G V Sbjct: 6 RPVYAEIDLDAIAYNIKNIKKLVKDKEIIAVVKADCYGHGALDVVPTLLENGASRLAVAV 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + EG++LR +A I +L + + +L + + SK S Sbjct: 66 LTEGIELRNDNIKAPIMILGYTPSYLNEELIKYDLEQTVYDLDYAKELSKTALSLNKKAK 125 Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G E A+D + + ++ I +H + +D+ + Q E+F Sbjct: 126 IHIAIDTGMGRIGFLPTEKAIDAICKICSLEGLEVIGIFTHFSTSDEKDKEYTNEQFEKF 185 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 L+ + +++S I+ P + R GI LYG ++ ++ Sbjct: 186 TDLLKKLSNLNIEIPIKHVSNSGAIMDMPETYLDAVRAGIILYGYYPSPEVKKENLSLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T +A I +++ AG +SYG R SLIA IGYADGY L Sbjct: 246 ALTLKATITRVQEMDAGMSISYGRTFNTERKSLIATIPIGYADGYSRLL----------- 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALA 349 K I G PI+G+I MD M DITD I+VGD + I G D+ A Sbjct: 295 AKNAKVIINGQFAPIVGRICMDQCMIDITDINGDIKVGDEVIILGEQNGLRFNADNFAEI 354 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 355 MGTINYEILCMLKYRIPRVY 374 >gi|317499467|ref|ZP_07957733.1| alanine racemase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893241|gb|EFV15457.1| alanine racemase [Lachnospiraceae bacterium 5_1_63FAA] Length = 387 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 167/384 (43%), Gaps = 26/384 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ + IDL A+ +N + + G + V+K + YG G IA L GV Sbjct: 1 MNQYYRVHAVIDLDAICHNIREVKRVVGEGVKVMPVIKADGYGHGAVPIAKELNKIGVDA 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V +EEG+ LR + I +L Q + + P + SK+ Sbjct: 61 FAVAILEEGITLRNNGIRQPILILGYTSEYQYSSLIQYEIEPTVFCYEMAESLSKIAQAL 120 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G +++DTG NR+G +E++D ++ I +H ACAD+ Sbjct: 121 GKDAKIHIKLDTGMNRIGFKPTKESVDIIEKIAKLPNIKIQGIFTHFACADEADKTETYE 180 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 Q ++ I+ + + + +S+ I+ + + R GI YG S Sbjct: 181 QERKYDQFITWLEERDIYIPIKHVSNSASIIDLDGFRKDMVRSGIITYGLYPSEEVSKDV 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + + I+ I++ AGE +SY + + IA +GYADGYP +LS Sbjct: 241 LDLRPAMELKTHIVYIKEVEAGEGISYNHTYVTDKKTKIATIPVGYADGYPRSLS----- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK I+G PI+G+I MD M D+TD + V D + + G D + +++ Sbjct: 296 ------SKGKVLIRGQYAPIIGRICMDQFMVDVTDIEGVSVMDEVTLVGHDGNKMLTVEE 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA +G+ NY+ + IG R + Y Sbjct: 350 VANEAGSFNYEFVCGIGKRVPRVY 373 >gi|262401537|ref|ZP_06078104.1| alanine racemase biosynthetic [Vibrio sp. RC586] gi|262352252|gb|EEZ01381.1| alanine racemase biosynthetic [Vibrio sp. RC586] Length = 361 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 113/365 (30%), Positives = 177/365 (48%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L AL++N + + +++ AVVK N YG G IA G F V +EE ++ Sbjct: 8 INLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + PG ++ N+ V+ QL + L+VD Sbjct: 66 LRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLETPVMVWLKVD 124 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ DF + + + +SH CAD+ + Q E F +L Sbjct: 125 SGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTAEQTELFLSLTQG 184 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245 +G E SLA+S+G+L P + RPGI +YG + KS Q V+T ++ +I + Sbjct: 185 CQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVMTLKSHLIAV 243 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AGE V YGG RD+ I V AIGY DGYP T G + G Sbjct: 244 REVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN-----------GTPVVVNGR 292 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI G+++MDM D+ + VGD ++G ++ +++VA GT Y+L+ ++ +R Sbjct: 293 RVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGYELVTKLTSRV 352 Query: 366 AKFYT 370 Y+ Sbjct: 353 EMSYS 357 >gi|182624961|ref|ZP_02952739.1| alanine racemase [Clostridium perfringens D str. JGS1721] gi|177909758|gb|EDT72176.1| alanine racemase [Clostridium perfringens D str. JGS1721] Length = 386 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 148/379 (39%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I+L + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEINLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G +E L+ + ++ + +H + +D+ Q + Sbjct: 126 IHIAIDTGMGRIGFLPNEEGLNKVLEICSLPGVEVVGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|156972397|ref|YP_001443304.1| alanine racemase [Vibrio harveyi ATCC BAA-1116] gi|156523991|gb|ABU69077.1| hypothetical protein VIBHAR_00017 [Vibrio harveyi ATCC BAA-1116] Length = 366 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 104/365 (28%), Positives = 177/365 (48%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL+AL++N + + +++ AVVK N YG G +A + F V +EE ++ Sbjct: 16 IDLSALQHNLQRVKQQAPDSKVMAVVKANGYGHGLRHVAKHATH--ADAFGVARIEEALQ 73 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + PG ++ N+ V+ QL + L++D Sbjct: 74 LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLVALEQ-AELETPVVVWLKID 132 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ +F +SH CAD+ + + + Q++ F +L + Sbjct: 133 SGMHRLGVRPEQYDEFITRLKECPNVAKPLRYMSHFGCADELDNSITTEQIDLFMSLTAG 192 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILI 245 +G E SLA+S+G+L P RPGI +YG + +K + V+T ++ +I + Sbjct: 193 CQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFNDKTAQDMGYKPVMTLKSHLIAV 251 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ GE V YGG RD+ + V A+GY DGYP T G + G Sbjct: 252 REVKKGESVGYGGMWTSERDTKVGVIAVGYGDGYPRTAPN-----------GTPVLVNGR 300 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI G+++MDM D+ + +V D ++G D+ +++VA GT Y+L+ ++ +R Sbjct: 301 KVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHIGTIAYELVTKLTSRV 360 Query: 366 AKFYT 370 Y+ Sbjct: 361 EMEYS 365 >gi|167625575|ref|YP_001675869.1| alanine racemase [Shewanella halifaxensis HAW-EB4] gi|167355597|gb|ABZ78210.1| alanine racemase [Shewanella halifaxensis HAW-EB4] Length = 358 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 168/366 (45%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALKNN ++ L+ +++ AVVK N YG G +A L N F + Sbjct: 3 PFPRAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDN--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR +A++ +L G + + ++ V+ Q+ + Sbjct: 61 LEEALALRAGGVKAKLLLLEGFFRAADLVTLVEHDIETVVHHESQIEMLEQ-AELNKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G +RLG E + + +++H ACAD+PS+ + QL F Sbjct: 120 VWMKIDSGMHRLGFVPDEFKVVYQRLLDCDNVAKPINLMTHFACADEPSNPYTAEQLAVF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L G + +LA+S+G L RPGI+LYG + + H + + Sbjct: 180 EALTKDLPG-DRTLANSAGALFWQQSQANWIRPGIALYGVSPVVGDLGTKHGLIPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I IR AG+ V Y +D+ + V AIGY DGYP LG Sbjct: 239 SQLIAIRDHKAGQPVGYASYWTADKDTKLGVVAIGYGDGYPRNA-----------PLGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G + PI+G+++MDM D+ VGD ++G ++ +++VA GT Y+L+ Sbjct: 288 VLINGRLAPIVGRVSMDMLTVDLGADAKDSVGDKAVLWGKELPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|258592918|emb|CBE69227.1| Alanine racemase [NC10 bacterium 'Dutch sediment'] Length = 392 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 104/377 (27%), Positives = 169/377 (44%), Gaps = 26/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++DL A+++N ++ L + + +VVK + YG G +A +AG V Sbjct: 18 HRAWVEVDLEAIRHNIAAIRRLLKPSTQLMSVVKADGYGHGAVAVARTALSAGASWLAVA 77 Query: 64 SVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +V+EG+ LR+ A I + I + + + + L P + S+ Q +S+ Sbjct: 78 TVDEGISLRMAGIDAPILLFGPVICTEEIEAVAEHRLQPTVCSLDQARRFSEAGLG--PV 135 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P L+VDTG +RLG+S QEA D + + SHLA AD Q ERF Sbjct: 136 PIHLKVDTGMSRLGISWQEAQDLLSAIRVLPDVSVVSLYSHLATADAVDPTTTREQFERF 195 Query: 183 RTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTV 235 L+ +GI LA+S+ L P+ HF L R G++ YG + ++ Sbjct: 196 SQLVETLEQQGIRPPLVHLANSAATLTFPDTHFDLVRIGLAQYGLYPSSHLQAVVALRPA 255 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +A+II ++ G VSYG + R + +A +IGY DG LS Sbjct: 256 LALKAKIIFVKTVPPGTGVSYGHTFRTARRTRLATVSIGYGDGISRALSNRIDF------ 309 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 ++G V +G ITMD + D+TD+ + GD + G I + + A G Sbjct: 310 -----LVRGRRVRQVGTITMDQCLIDVTDAPEVSDGDIATLLGHDGEEGISIAEWAERLG 364 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y++L + R + Sbjct: 365 TIPYEILTALSPRLPRI 381 >gi|84393171|ref|ZP_00991935.1| alanine racemase [Vibrio splendidus 12B01] gi|84376223|gb|EAP93107.1| alanine racemase [Vibrio splendidus 12B01] Length = 358 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 171/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL AL++N + + + + + +VVK N YG G IA N+ F V +E Sbjct: 4 ATASIDLNALEHNLNQIKSKAPQCKVMSVVKANGYGHGLLHIAKHSKNS--DAFGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + I TN I + + + L Sbjct: 62 EALQLRAGGIVKPILLLEGFYSSGDLPILVTNNIQTVVHCEEQLSALENADLETPVVVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VD+G +RLG+ ++ +F + + +SH CAD+ Q E F +L Sbjct: 122 KVDSGMHRLGVRPEQYQNFVERLHQCANVAKPLRYMSHFGCADELDRATTVEQTELFLSL 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARI 242 +G E SLA+S+G+L PN H RPGI YG + +KS + V+T + + Sbjct: 182 TDGCEG-ERSLAASAGLLAWPNSHLDWVRPGIISYGVSPFADKSAQELGFKPVMTLTSHL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE V YG RD+ + V AIGY DGYP G F+ Sbjct: 241 IAVRDVKAGESVGYGANWTSERDTKVGVIAIGYGDGYPRMAPN-----------GTPVFV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI G+++MDM D+ + +VGD ++G D+ ++VA GT Y+L+ ++ Sbjct: 290 NGRKVPIAGRVSMDMLTVDLGPDAADKVGDEATLWGKDLPSEEVAEHIGTIAYELVTKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|167766635|ref|ZP_02438688.1| hypothetical protein CLOSS21_01141 [Clostridium sp. SS2/1] gi|167711758|gb|EDS22337.1| hypothetical protein CLOSS21_01141 [Clostridium sp. SS2/1] gi|291558653|emb|CBL37453.1| alanine racemase [butyrate-producing bacterium SSC/2] Length = 387 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 167/384 (43%), Gaps = 26/384 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ + IDL A+ +N + + G + V+K + YG G IA L GV Sbjct: 1 MNQYYRVHAVIDLDAICHNIREVKRVVGEGVKVMPVIKADGYGHGAVPIAKELNKIGVDA 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V +EEG+ LR + I +L Q + + P + SK+ Sbjct: 61 FAVAILEEGITLRNNGIRQPILILGYTSEYQYSSLIQYEIEPTVFCYEMAESLSKIAQAL 120 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G +++DTG NR+G +E++D ++ I +H ACAD+ Sbjct: 121 GKDAKIHIKLDTGMNRIGFKPTKESVDIIEKIAKLPNIKIQGIFTHFACADEADKTETYE 180 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 Q ++ I+ + + + +S+ I+ + + R GI YG S Sbjct: 181 QERKYDQFITWLEERDIYIPIKHVSNSASIIDLDGFRKDMVRSGIITYGLYPSEEVSKDV 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + + I+ I++ AGE +SY + + IA +GYADGYP +LS Sbjct: 241 LDLRPAMELKTHIVYIKEVEAGEGISYNHTYVTDKKTKIATIPVGYADGYPRSLS----- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 GK I+G PI+G+I MD M D+TD + V D + + G D + +++ Sbjct: 296 ------SKGKVLIRGQYAPIIGRICMDQFMVDVTDVEGVSVMDEVTLVGHDGNKMLTVEE 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA +G+ NY+ + IG R + Y Sbjct: 350 VANEAGSFNYEFVCGIGKRVPRVY 373 >gi|260767143|ref|ZP_05876087.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972] gi|260617864|gb|EEX43039.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972] gi|315181333|gb|ADT88247.1| alanine racemase, biosynthetic [Vibrio furnissii NCTC 11218] Length = 364 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 174/373 (46%), Gaps = 18/373 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + N++ AVVK N YG G +A G F Sbjct: 1 MNYMKAATACINLDALRHNLQQIKQQAPNSKLMAVVKANGYGHGLRHVAKHAV--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR I +L G + + + TN I + + + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSQGDLPVLVTNNIQTVLHCEEQLQALESAELET 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +RLG+ ++ F + + +SH CAD+ + Q+ Sbjct: 119 PVVVWLKIDSGMHRLGVRPEQYAQFVARLQACNNVAKPLRYMSHFGCADELDKSTTTEQI 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236 E F +L + +G E S+A+S+G+L P + RPGI +YG + K+ Q V+ Sbjct: 179 ELFLSLTNGCEG-ERSMAASAGLLAWPQSQMEWVRPGIIMYGVSPFAEKNAQQLGYQPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ +I +R AGE V YG RD+ I V AIGY DGYP T Sbjct: 238 TLKSHLIAVRDVKAGESVGYGATWVSERDTKIGVIAIGYGDGYPRTAPN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +VP+ G+++MDM D+ VGD ++G ++ +++VA GT Y+ Sbjct: 287 GTPVVVNGRVVPLAGRVSMDMLTVDLGPDARDNVGDEAILWGSELPVEEVASHIGTLGYE 346 Query: 357 LLVRIGTRYAKFY 369 L+ ++ +R Y Sbjct: 347 LVTKLTSRVDMSY 359 >gi|168212492|ref|ZP_02638117.1| alanine racemase [Clostridium perfringens CPE str. F4969] gi|170716170|gb|EDT28352.1| alanine racemase [Clostridium perfringens CPE str. F4969] Length = 386 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 147/379 (38%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL + NN + L G AVVK NAYG G IA L G V Sbjct: 6 RPVWAEIDLDIIANNMKEIRNLVGEKEIIAVVKANAYGHGALDIASTLLENGASRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + E +LR A I +L + + + + + V S G Sbjct: 66 ITEADELRDAGITAPIMILGYTPINFAENLINNEIEQTVYDVEYAKELSDFALKLGKKAK 125 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G E L+ + ++ + +H + +D+ Q + Sbjct: 126 IHIAIDTGMGRIGFLPNKEGLNKVLEICSLPGVEVIGLFTHFSTSDEKDKTYTYEQFSKL 185 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 GI L +S + P + R GI YG ++ ++ Sbjct: 186 TAFNKALEDNGIHIPLKHASNSGAIMDLPETYLDGVRCGIISYGYYPSEEVKKENLKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T + + +++ VSYG K + S IA IGYADGY LSG Sbjct: 246 ALTLKTNVAFVKELDEDMYVSYGRTYKTEKKSKIATLPIGYADGYSRLLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALAS 350 K IKG ++G++ MD M D+T +++GD + + G + +D+A Sbjct: 297 --KAKVIIKGQFANVIGRVCMDQCMIDVTHIEDVKIGDEVILLGEENGLKFDANDMAEIM 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY++L I R + Y Sbjct: 355 GTINYEILCMISHRVPRIY 373 >gi|126659612|ref|ZP_01730742.1| alanine racemase [Cyanothece sp. CCY0110] gi|126619058|gb|EAZ89797.1| alanine racemase [Cyanothece sp. CCY0110] Length = 402 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 113/379 (29%), Positives = 168/379 (44%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL+AL +N + L S AVVK +AYG G +A AG V Sbjct: 19 RKRAWVEIDLSALSHNVRQIKQLLSPKTALMAVVKADAYGHGAIAVAQTALQAGASALAV 78 Query: 63 TSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 ++ EG++LR A I +L P + I NL P + Q S+ + C Sbjct: 79 ATLGEGIELREAGITAPILILGAINTPEEIAAIAHWNLEPTLCYPEQAMVVSQTLSQCEK 138 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 P L++DTG +RLG+ + +F L + SHLA ADDP +Q + Sbjct: 139 VLPVHLKLDTGMSRLGIPWHQGTEFVTLVKQLPYLNLRSVYSHLATADDPDPSHMYLQHK 198 Query: 181 RFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233 RF++ I+ A+S+ L+ P H+ L R G+ LYG + P++ Sbjct: 199 RFKSAIANLKTQGIGPPRLHFANSAATLIAPQLHYDLVRVGLGLYGLYPAPHLRSIVPLK 258 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +A+I I+ VSYG Q R IAV IGYADG P LS Sbjct: 259 PVLQVKAKITQIKSIPTNTGVSYGYQFVSDRPMKIAVVGIGYADGVPRNLSNRL------ 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + I+G V +G ITMD M D++ ++VGD + + G D I D A Sbjct: 313 -----QVLIQGQRVRQIGAITMDQLMLDVSHLRQVKVGDVVTLIGQDGDYEITADHWARM 367 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 368 LGTISWEILCGFKHRLPRI 386 >gi|320331880|gb|EFW87818.1| alanine racemase [Pseudomonas syringae pv. glycinea str. race 4] gi|330873077|gb|EGH07226.1| alanine racemase [Pseudomonas syringae pv. glycinea str. race 4] Length = 357 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + N V+ S QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWMVVHSTWQLEAIEQ-AQLAKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SF-RKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|303242638|ref|ZP_07329113.1| alanine racemase [Acetivibrio cellulolyticus CD2] gi|302589846|gb|EFL59619.1| alanine racemase [Acetivibrio cellulolyticus CD2] Length = 389 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 27/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++L + +N + ++ A VVK +AYG G ++A L GV V+ Sbjct: 6 NRAWAEVNLDNIAHNVKEIRRITDKKAEIMGVVKADAYGHGVMEVAKTLLENGVTRLAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++E ++LR I +L P + + I ++ + S S+ + Sbjct: 66 MLDEAIQLRKNGIDVPILILSYTDPRRAEEIILNDVTQTVFSHDLAEALSEAAVRLDKNI 125 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++D+G R+G A+ + + +H A +D+ +Q ER Sbjct: 126 KIHIKIDSGMTRVGFMPGYSAVKNVVKISKLPKIIIEGLFTHFASSDEIDRSYTYMQFER 185 Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233 F +++S I + +S+G++ P H + RPGI+LYG ++ Sbjct: 186 FMSIVSELNRIGIYIPVKHVCNSAGVIEFPEMHLNMVRPGIALYGMYPSEEVQKDRINLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T +A IIL++ +SYG K R+S IA IGYADGY L+ Sbjct: 246 PAMTLKANIILVKDVETDTCISYGRIFKTQRESRIATLPIGYADGYTRLLTN-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIF----GPDIKLDDVAL 348 G+ + G VPI+GKI MD M D+TD + VGD + +F G +I ++D+A Sbjct: 298 ---KGRVLVNGQSVPIVGKICMDQCMIDVTDVQGEVNVGDEVVLFGSQNGSEISIEDLAS 354 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++ IG R + Y Sbjct: 355 KIGTINYEIACIIGKRIPRVY 375 >gi|320322231|gb|EFW78327.1| alanine racemase [Pseudomonas syringae pv. glycinea str. B076] Length = 357 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + N V+ S QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQ-AQLAKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SF-RKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|300857181|ref|YP_003782165.1| alanine racemase [Clostridium ljungdahlii DSM 13528] gi|300437296|gb|ADK17063.1| alanine racemase [Clostridium ljungdahlii DSM 13528] Length = 385 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 24/382 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + ++ + +++DL+ + +N S+ + + VVK +AYG G +AP L G Sbjct: 2 LTNHRPVWVEVDLSIIASNMRSIRDVCKDKEIFGVVKADAYGHGAIDVAPVLLENGATRL 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119 V V EG++LR +I VL P + + + L PV+S S+ + Sbjct: 62 AVALVSEGIELRKAGVTCQINVLGITPPNLFRELLEYELEPVVSDYDYAKALSESAAALN 121 Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + L+VDTG R+G + ++A+D + I SH + A + + + Q Sbjct: 122 KTVRIHLKVDTGLGRIGFLTTEKAVDEAVMISKLPNIFIESIFSHFSSAGEANKEYSYKQ 181 Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHP 231 E+F+ I+ + +A+SS I P + RPG +YG + D + P Sbjct: 182 FEKFQWFINKMEEKGLYIKLKHIANSSAIWNLPETYLDGVRPGTIIYGCSSDDVKREVIP 241 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ +T +A I+ +++ AG+ + YG + + R S+I +GYADGY LSG Sbjct: 242 IKPAMTWKANILFLKELEAGQYIGYGRKFRTERKSIIGTLGVGYADGYSRMLSG------ 295 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 K I G P++G I MD M D+TD +++GD + + G I DD+A Sbjct: 296 -----KAKVIINGKFAPVVGNICMDQCMVDLTDIGDVKLGDEVILMGSQGELKIDADDIA 350 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT N +++ IG R + Y Sbjct: 351 KLIGTNNNEVMCLIGRRVPRVY 372 >gi|88858927|ref|ZP_01133568.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas tunicata D2] gi|88819153|gb|EAR28967.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas tunicata D2] Length = 358 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 172/370 (46%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I L AL +N+ + + ++ AV+K NAYG G IA L + F V Sbjct: 2 RLATAEISLAALDHNFKRVKEFAPASQIMAVLKANAYGHGLVAIAKRLSS--ADAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR I +L G P I+ N +I QL G+ Sbjct: 60 IDEALALRAGGLVKPIVLLEGFFEPQDLPILLANNFQTIIHHQSQLDALMNCDLDGM-LT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG +RLG+S ++ S + + +++H ACADD S+ QL F Sbjct: 119 TWLKIDTGMHRLGISPEQFSKAYQTLSQCEHVNPNIRLMTHFACADDLSNGKTQQQLAVF 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 LI+ K + LA+S+ I+ P+ H RPG+ +YG + +NK H + V+ + Sbjct: 179 SELIADKKQ-QTCLANSAAIIGWPDSHGDWVRPGLMMYGVSPMLNKVGADHGLAPVMRLK 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 R+I +R GE V YG D++I V A+GY DGYP G Sbjct: 238 TRLISLRVVKKGEAVGYGSTWTCPIDTIIGVVAMGYGDGYPRHA-----------PSGTP 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G VP++G+++MDM D+ ++GD + ++GP++ ++ VA + T Y+LL Sbjct: 287 VMVNGKQVPLVGRVSMDMITVDLGLETDAKIGDQVILWGPELPVEVVAQCADTIPYELLC 346 Query: 360 RIGTRYAKFY 369 I R Y Sbjct: 347 NITPRVDYHY 356 >gi|262163859|ref|ZP_06031599.1| alanine racemase biosynthetic [Vibrio mimicus VM223] gi|262027839|gb|EEY46504.1| alanine racemase biosynthetic [Vibrio mimicus VM223] Length = 364 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 177/374 (47%), Gaps = 18/374 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + +++ AVVK N YG G IA G F Sbjct: 1 MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAVVKANGYGHGLRHIARYAI--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR I +L G + + + TN I + + + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSQGDLPVLVTNNIQTVVHCEEQLQALEQAQLET 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VD+G +RLG+ ++ DF + + + +SH CAD+ + Q Sbjct: 119 PVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCVNVAKPLRYMSHFGCADELDKSTTAEQT 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236 E F +L +G E SLA+S+G+L P + RPGI +YG + KS Q V+ Sbjct: 179 ELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 238 TLKSHLIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G VPI G+++MDM D+ + VGD ++G ++ +++VA GT Y+ Sbjct: 287 GTPVVVNGRRVPIAGRVSMDMLTVDLGPEAADCVGDEAMLWGRELPVEEVAAHIGTLGYE 346 Query: 357 LLVRIGTRYAKFYT 370 L+ ++ +R Y+ Sbjct: 347 LVTKLTSRVEMSYS 360 >gi|127514205|ref|YP_001095402.1| alanine racemase [Shewanella loihica PV-4] gi|254802378|sp|A3QI45|ALR_SHELP RecName: Full=Alanine racemase gi|126639500|gb|ABO25143.1| alanine racemase [Shewanella loihica PV-4] Length = 358 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 175/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALK N + L+ ++ AVVK N YG G +A L A F + Sbjct: 3 PFPRAEISGDALKANLKRLRQLAPQSKVMAVVKANGYGHGLLNVAHCL--ASADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A++ +L G P + + ++ V+ QL S Sbjct: 61 LEEALELRAGGVSAKLLLLEGFFRPSDVATLVEHDIDTVVHHESQLEMLEA-ASLAKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++DTG +RLG +L + + + +++H ACAD+P + + Q RF Sbjct: 120 VWMKIDTGMHRLGFNLDQFEAIYQRLQACANVAKPINLMTHFACADEPDNPATAEQARRF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 + ++ G + +LA+S+ L RPGI+LYG + + ++H ++ + Sbjct: 180 EQMTANLPG-DRTLANSAATLYWQATQADWIRPGIALYGVSPVVGDLGRNHGLEPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R AG+ V YG + +D+ + V AIGY DGYP G Sbjct: 239 SQLIAVRDHKAGDPVGYGSYWRAKQDTKLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G +VP++G+++MDM D+ + +VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRLVPVVGRVSMDMLTVDLGLDATDKVGDTAVLWGKALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|150395954|ref|YP_001326421.1| alanine racemase [Sinorhizobium medicae WSM419] gi|150027469|gb|ABR59586.1| alanine racemase [Sinorhizobium medicae WSM419] Length = 408 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 180/375 (48%), Positives = 243/375 (64%), Gaps = 6/375 (1%) Query: 1 MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M +++F RL +DL AL +NW MN SG AR AAV+K NAYGLG + APALY AG Sbjct: 30 MQNSDFSSASSRLTVDLAALADNWRMMNERSGRARAAAVLKGNAYGLGVMQAAPALYAAG 89 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 +DFFV SVEEG +LR P+ R++VL G+ PG E + F+ +L+P+I+S QL ++ + Sbjct: 90 ARDFFVASVEEGAELRPLVPEGRVYVLAGMWPGNEALFFENDLVPIINSQEQLAYFMAAL 149 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 S HP L VDTG NRLGLS +EAL H+ L++SHLACADDP +N Sbjct: 150 SERGDHPCVLHVDTGMNRLGLSPEEALRLVHDPVRPASFSPVLVMSHLACADDPGHPMNR 209 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG +PM+ VV Sbjct: 210 HQLQRFREVTAFFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVDGDVNPMKPVV 269 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 AEARI+ IR +GE SYG + RDS IA AIGYADGY ++SG ++ Sbjct: 270 IAEARIVQIRTVPSGESASYGASVRFGRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPS 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354 G GF+ G VP +G++TMD+++FD+TD + GDYI++FG +I +DDVA A GT Sbjct: 330 GAFGFLHGRKVPHVGRVTMDLSLFDVTDLPESTVRAGDYIELFGRNIPIDDVARAGGTIG 389 Query: 355 YDLLVRIGTRYAKFY 369 Y+LL +G RY + Y Sbjct: 390 YELLTSLGRRYHRTY 404 >gi|117620242|ref|YP_857049.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561649|gb|ABK38597.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 369 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 107/373 (28%), Positives = 177/373 (47%), Gaps = 21/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M++ + ID+ AL++N+ + + +++ AV+K NAYG G +A AL + Sbjct: 1 MNT---VTASIDIDALQHNFAVVRRHAPHSKIIAVLKANAYGHGLLPVAHALAQ--ADAY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V VEE + LR I VL G + + + + + + S Sbjct: 56 AVARVEEALVLRANAITKPILVLGGFFSAEALPLLAKHELQTTLHTWEQLALLEQASLPA 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++DTG NRLGL +E F S + + Q +++H + +D+ + +Q+ Sbjct: 116 PIKVWLKLDTGMNRLGLRAEELPAFIERLSHCRNVVQPFHLMTHFSQSDEQDTQATRLQI 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 E F L +H G E ++A+S+GIL P RPG+ LYG + + H ++ V+ Sbjct: 176 EEFNRLSAHLPG-ERAMANSAGILAWPASRSDWIRPGLMLYGASPFAGQLAADHDLRPVM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++++I R GE V YGG R++ + V A GY DGYP Sbjct: 235 TLKSQLIATRACAQGEAVGYGGHWVADRNTTLGVVAAGYGDGYPRMA-----------PE 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G I G VPI+G+++MDM D+ + +VGD + ++G + ++ VA GT Y+ Sbjct: 284 GTPMLINGRQVPIVGRVSMDMITVDLGPAARDKVGDEVTLWGEGLPVEQVAEKIGTIPYE 343 Query: 357 LLVRIGTRYAKFY 369 LL R+ +R Y Sbjct: 344 LLTRLTSRVHLTY 356 >gi|213970669|ref|ZP_03398794.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato T1] gi|301382556|ref|ZP_07230974.1| alanine racemase [Pseudomonas syringae pv. tomato Max13] gi|302063077|ref|ZP_07254618.1| alanine racemase [Pseudomonas syringae pv. tomato K40] gi|302133576|ref|ZP_07259566.1| alanine racemase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924503|gb|EEB58073.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato T1] Length = 357 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 163/369 (44%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG R AV+K +AYG G +A AL A F V Sbjct: 2 RPARALIDLQALRHNYRLARDSSGG-RALAVIKADAYGHGAVHVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLEAIEQAQPGKPLTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH +CAD+ +S + Q+ F Sbjct: 120 WLKLDTGMHRVGLHPSEYRAAYQRLLATGKVPRVVLMSHFSCADELNSACSDQQVAVFEA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 E SL +S ++ PN +R GI LYG T + +Q V+T E++ Sbjct: 180 ARQGLVA-ETSLKNSPAVMGWPNIPSDWSRTGIMLYGATPFDQTQPLAERLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG R I V A+GYADGYP G Sbjct: 239 VISVRELPAGEAVGYGATFVSERPLRIGVVAMGYADGYPRHA-----------PTGTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+TD +G +Q++G + +VA +GT Y + + Sbjct: 288 IDGQRSRLLGRVSMDMLCVDLTDVPQAGLGSRVQLWGKGVLASEVATQAGTIPYQIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|75906615|ref|YP_320911.1| alanine racemase [Anabaena variabilis ATCC 29413] gi|75700340|gb|ABA20016.1| alanine racemase [Anabaena variabilis ATCC 29413] Length = 395 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 113/381 (29%), Positives = 174/381 (45%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL +N + LS + AVVK +AYG G +A AG V Sbjct: 23 SQRAWVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM---SC 118 +V EG++LR QA I +L H P Q + I L P I S Q +S + Sbjct: 83 ATVPEGIQLREAGMQAPILILGATHTPEQIQAIAQWQLQPTIGSPKQALIFSNTLETIQH 142 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++DTG +RLG + Q+A +F ++ + SHLA AD P + Q Sbjct: 143 DSPVPVHIKLDTGMSRLGTNWQQAGEFVQLVERLPHLNIASVYSHLATADSPDPGIMEEQ 202 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHP 231 RF I+ K + LA+S+ L P H+ + R G+++YG + K Sbjct: 203 YRRFEEAIAQIKALSIKIPCLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQKKIS 262 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ +AR+ ++ AG VSYG Q + +AV IGYADG P LS Sbjct: 263 LKPVIQVQARVTHVKTIAAGTGVSYGHQFIAPHEMRLAVVGIGYADGIPRNLSN------ 316 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + I+G VP +G ITMD M D++ ++ G+ + + G I DD A Sbjct: 317 -----KMQVLIRGQRVPQIGAITMDQLMIDVSALPDLQEGEIVTLLGKQGKEKITADDWA 371 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 372 EELNTISWEILCGFKHRLPRV 392 >gi|169830668|ref|YP_001716650.1| alanine racemase [Candidatus Desulforudis audaxviator MP104C] gi|169637512|gb|ACA59018.1| alanine racemase [Candidatus Desulforudis audaxviator MP104C] Length = 380 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 161/379 (42%), Gaps = 27/379 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 + +++L+AL +N + L G + AAVVK NAYG G ++A L G V V Sbjct: 8 VWAEVNLSALAHNLGEVRRLVGSDTEVAAVVKANAYGHGLVEVAGTLLAHGADRLCVARV 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPY 124 +EGV LR A + V+ + P D +L + + G P Sbjct: 68 DEGVALREAGIDAPVLVMGFVPPPLYDTALDHDLTLTVYDPEAAAELSAAAARHGRPAPV 127 Query: 125 ALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG RLGL + + ++ + +H A AD QL F Sbjct: 128 HLKLDTGMGRLGLVTADRDLYRNILAIASLPHLEIEGLYTHFANADRRDKSHAQRQLVDF 187 Query: 183 RT--LISHYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234 + GI+ L A+S+ ++ P L RPGI LYG + Sbjct: 188 VEVTCTLGHDGIDIELLHAANSAALIDMPESRLNLVRPGIMLYGLYPSPEVKTRQVDLRP 247 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+T +A++ +++ AG VSYG + +A GYADGY LS Sbjct: 248 VMTLKAQVGFLKRVPAGWTVSYGSTYTTPAPTTLATVPCGYADGYNRRLSNR-------- 299 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 G I G P++G++TMD + D+ + VGD + +FG ++ +D+VA Sbjct: 300 ---GAVLIHGRRAPVVGRVTMDQIVVDVGHIPGVAVGDEVVLFGRQGEAELHVDEVAALL 356 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T NY+++ + R + Y Sbjct: 357 DTINYEVVCAVSARVPRVY 375 >gi|222529882|ref|YP_002573764.1| alanine racemase [Caldicellulosiruptor bescii DSM 6725] gi|222456729|gb|ACM60991.1| alanine racemase [Caldicellulosiruptor bescii DSM 6725] Length = 390 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 160/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL L N ++ + AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWAEIDLDNLVYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + ++ + + Q + S+ G + Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENDISQTVYTYEQAYYLSQAAQKIGKNA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLE 180 ++VDTG R+G E++ N +L I SH + D S Q Sbjct: 128 KIHIKVDTGMGRIGFLCCDESIQTVLNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFM 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFEKFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISIK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRIGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----YVLIKGEFAKVIGNICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 357 IGTINYEIVCSFSKRIPRVY 376 >gi|146296075|ref|YP_001179846.1| alanine racemase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409651|gb|ABP66655.1| alanine racemase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 387 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 163/384 (42%), Gaps = 26/384 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + +I+L L N +++ + N + AVVK +AYG G +++ L G+ Sbjct: 1 MSLYSRVWAEINLDNLIYNVNNIKEKILPNTQIMAVVKADAYGHGAIEVSRVLVRNGINM 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 V ++E ++LR Y I +L + + + ++ + + Q + Sbjct: 61 LAVAIIDEALQLRHYNFDIPILILGFTPFELSEQVVENDISQTVYTFEQAYYLNEAAKKI 120 Query: 119 GVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNS 176 G ++VDTG R+G +E+++ + +L I SH + ADDP S Sbjct: 121 GKKAKVHIKVDTGMGRIGFLCTKESIETIIRIASLSHIELEGIFSHFSSADDPQSDNFTY 180 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKS 229 Q RF + +A+S+ + P Y + R G+ LYG + Sbjct: 181 EQFLRFENFVKELNKNGVYFKYRHIANSAAAIRFPQYQLDIVRLGLVLYGLYPSEAVKTE 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ +A++I +++ G +SY + S IA IGYADG+ S Sbjct: 241 ISLKPVMSVKAKVINVKEVPEGYPISYNRKYVTPCKSKIATIPIGYADGFTRVGS----- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 I G ++G + MD M D+T +++GD + I G +I DD Sbjct: 296 ------EKRYVLINGEYAKVVGNVCMDQCMVDVTHIRDVKIGDEVVIIGKQGKNEITADD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+++ + R + Y Sbjct: 350 LASQIGTINYEVICSVSKRIPRVY 373 >gi|297617945|ref|YP_003703104.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680] gi|297145782|gb|ADI02539.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680] Length = 379 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 163/384 (42%), Gaps = 26/384 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 MH ++DL A+ +N + L G AR VVK NAYG G ++A G + Sbjct: 2 MHLARPTWAEVDLGAVAHNLKELRNLLVGTARLMPVVKANAYGHGILEVARTCVEEGAEF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V ++E + L+ ++ G + + + +L ++C Sbjct: 62 LAVALLDEALLLKEAGINRPRILVLGATSEEGAQEAVKQGVRLTCFDRRLAEAVSRVACK 121 Query: 120 VSHP--YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + P +++DTG RLG E AL ++ I +H A AD Sbjct: 122 LQKPGYIHIKIDTGMGRLGFYPDERALADIEEFLRLPGLEVEGIFTHFAAADAADKSYTE 181 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHP 231 QL RF + KG++ L ++ + P+ H L RPGIS+YG ++ Sbjct: 182 WQLRRFLDFVGELEQKGVKIPLKHAANSAALIDLPSAHLDLVRPGISVYGLWPSDEVANR 241 Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +RI++++ G VSYG TR + +A IGYADGY LSG Sbjct: 242 CLNLIPAMRLLSRIVMLKDLPPGHAVSYGCTYITTRTTKVATVPIGYADGYSRLLSGKV- 300 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDD 345 ++G V +G+I MD MFD+++ + GD + +FG + D+ Sbjct: 301 ----------HAVVRGKRVCGIGRICMDQCMFDVSEVEGVREGDEVILFGRPEDGVTADE 350 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+++ +G R + Y Sbjct: 351 LASLIGTINYEIVCMLGPRIPRIY 374 >gi|119509533|ref|ZP_01628680.1| alanine racemase [Nodularia spumigena CCY9414] gi|119465722|gb|EAW46612.1| alanine racemase [Nodularia spumigena CCY9414] Length = 395 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 109/381 (28%), Positives = 175/381 (45%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL +N + LS N + AVVK +AYG G +A +G V Sbjct: 23 SQRAWVEIDLGALSHNVQQLVQFLSPNTQLMAVVKADAYGHGAVTVAQTAVESGAGWLGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118 +V EG++LR +A I +L P Q + I L P + S Q +S ++ Sbjct: 83 ATVPEGIQLREGGIKAPILILGASYTPEQIQAIAHWKLQPSLCSPKQAFIFSNILETIND 142 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G P +++DTG +RLG + +EA++F N +++ I SHLA ADD + Q Sbjct: 143 GSPLPVHIKLDTGMSRLGTNWKEAVEFVQLVQNLPHLEIASIYSHLATADDLDTTFMQEQ 202 Query: 179 LERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 RF I+ LA+S+ L H+ + R G+++YG + H + Sbjct: 203 HRRFEQAIAQIKSTGINPPCLHLANSAASLTNRALHYDIVRAGLAIYGLYPATHLQHTIH 262 Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 V+ + R+ ++ AG VSYG Q ++ +AV IGYADG P LS Sbjct: 263 LKPVLQLKTRVTQVKTIAAGTGVSYGQQFIAPQEMRLAVVGIGYADGVPRNLS------- 315 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + I+G VP +G ITMD M D++ ++ G+ + + G I +D A Sbjct: 316 ----QKMQVLIRGQRVPQVGTITMDQLMLDVSAIPDLQEGEIVTLLGEQGREQISANDWA 371 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 372 EKLNTISWEILCGFKHRLPRV 392 >gi|28867343|ref|NP_789962.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato str. DC3000] gi|28850577|gb|AAO53657.1| alanine racemase, catabolic [Pseudomonas syringae pv. tomato str. DC3000] gi|331018536|gb|EGH98592.1| alanine racemase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 357 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 162/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG R AV+K +AYG G +A AL A F V Sbjct: 2 RPARALIDLQALRHNYRLARDSSGG-RALAVIKADAYGHGAVHVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPILLLEGFFEADELALIVEHDLWTVVHAIWQLEAIEQAQLGKPLTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH +CAD+ +S + Q+ F Sbjct: 120 WLKLDTGMHRVGLHPSEYRAAYQRLLATGKVARVVLMSHFSCADELNSACSDQQVAVFEA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 E SL +S ++ P +R GI LYG T + +Q V+T E++ Sbjct: 180 ARQGLVA-ETSLKNSPAVMGWPKIPSDWSRTGIMLYGATPFDQTQPLAERLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG R I V A+GYADGYP G Sbjct: 239 VISVRELPAGEAVGYGATFVSERPLRIGVVAMGYADGYPRHA-----------PTGTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +LG+++MDM D+TD +G ++++G + +VA +GT Y + + Sbjct: 288 IDGQRSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKAVLASEVATQAGTIPYQIFCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -RRVPRIYS 355 >gi|269961478|ref|ZP_06175842.1| alanine racemase [Vibrio harveyi 1DA3] gi|269833855|gb|EEZ87950.1| alanine racemase [Vibrio harveyi 1DA3] Length = 369 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 105/365 (28%), Positives = 177/365 (48%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL+AL++N + + ++ AVVK N YG G +A + F V +EE ++ Sbjct: 19 IDLSALQHNLQRVKEQAPESKVMAVVKANGYGHGLRHVAKHATH--ADAFGVARIEEALQ 76 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + PG ++ N+ V+ QL + L++D Sbjct: 77 LRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLAALEQ-ADLETPVVVWLKID 135 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ +F +SH CAD+ + + + Q++ F +L + Sbjct: 136 SGMHRLGVRPEQYDEFITRLKECPNVAKPLRYMSHFGCADELDNSITTEQIDLFMSLTAG 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILI 245 +G E SLA+S+G+L P RPGI +YG + +K + V+T ++ +I + Sbjct: 196 CQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFDDKTAQDMGYKPVMTLKSHLIAV 254 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ GE V YGG RD+ + V A+GY DGYP T G F+ G Sbjct: 255 REVKKGESVGYGGMWTSERDTKVGVIAVGYGDGYPRTAPN-----------GTPVFVNGR 303 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI G+++MDM D+ + +V D ++G D+ +++VA GT Y+L+ ++ +R Sbjct: 304 KVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHIGTIAYELVTKLTSRV 363 Query: 366 AKFYT 370 Y+ Sbjct: 364 EMEYS 368 >gi|308051015|ref|YP_003914581.1| alanine racemase [Ferrimonas balearica DSM 9799] gi|307633205|gb|ADN77507.1| alanine racemase [Ferrimonas balearica DSM 9799] Length = 358 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 181/365 (49%), Gaps = 19/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +I +AL +N + AL+ N++ AVVK NAYG G ++A + + V F + +EE Sbjct: 7 AEIRRSALNHNLQRLRALAPNSKLMAVVKANAYGHGLIRLASWMSD--VDGFGLARIEEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR QAR+ +L G+ ++ + + V+ + + L++ Sbjct: 65 LALRESGSQARLVLLEGVFSAEDLEQAAQHELDVVIHDAEQVRLLEHTPLSQPLTIWLKI 124 Query: 129 DTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG +RLG++ ++ + +++H + AD+ + Q++RF L Sbjct: 125 DTGMHRLGVTAEQFSALYQRLCQCDNVRTPPNLMTHFSVADELENPETVRQIQRFNQLAQ 184 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIIL 244 + G E +L++S+G L P+ H RPG++LYG I + ++ V+T ++++ Sbjct: 185 NLPG-EKALSNSAGTLSWPSAHGDWVRPGLALYGVNPMIGGRAEQFDLKPVMTMRSKVLA 243 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ AGE V YG + +RD+ IAV A+GY DGYP G I G Sbjct: 244 VRELKAGEPVGYGQTWRSSRDTRIAVIAMGYGDGYPRHA-----------VSGTPVLING 292 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P+ G+I+MDM ++ ++ ++VGD + ++G + ++++A +GT Y+LL R Sbjct: 293 QRYPLAGRISMDMLTVEVGEAP-VQVGDDVVLWGDGLPVEEIAECAGTIPYELLCSTTAR 351 Query: 365 YAKFY 369 Y Sbjct: 352 VQYRY 356 >gi|294102372|ref|YP_003554230.1| alanine racemase [Aminobacterium colombiense DSM 12261] gi|293617352|gb|ADE57506.1| alanine racemase [Aminobacterium colombiense DSM 12261] Length = 372 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 160/378 (42%), Gaps = 24/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++++L +++N+ ++ G + AVVK +AYG G ++A +L AG Q F V Sbjct: 4 RPTRMEVNLANIQSNFKTIRRHVGAGPQIMAVVKADAYGHGAVEVAKSLIEAGCQRFAVA 63 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 + +E V LR I VL ++ ++ + S+ + G + Sbjct: 64 TPDEAVVLREAGINDPILVLGPSPYDAASAYVKHDISAALTDLVFAQMMSREAVNQGKTA 123 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG R+G ++ + ++ + +H A AD+ + Q R+ Sbjct: 124 LLHLKIDTGMGRIGFLPEQIPGIIDDILKLPGIKIEGLFTHFATADEKRLDYTNQQFARY 183 Query: 183 RT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + +S+ +L P H RPGI LYG P++ T Sbjct: 184 MKVYHFLESKGVRVPLRHVCNSAAVLNSPEKHLDAVRPGIILYGMYPSSECIRPIELKPT 243 Query: 238 AEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 E + I +++ + V YG + IAV IGY DG+ LS Sbjct: 244 FEVKTAIAAVKEISSNSGVGYGLRYMSRGTEKIAVLPIGYGDGFSRCLS----------- 292 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + + G V ++G I MD TM D+TD ++VGD + I G I +++A A G Sbjct: 293 MKVPVLVHGKRVSLVGNICMDQTMIDVTDIEDVKVGDEVVIVGRQGEEAITPEEIAPARG 352 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 353 TINYEIPIMFSKRVPRVY 370 >gi|292669625|ref|ZP_06603051.1| alanine racemase [Selenomonas noxia ATCC 43541] gi|292648834|gb|EFF66806.1| alanine racemase [Selenomonas noxia ATCC 43541] Length = 368 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 164/376 (43%), Gaps = 22/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL A+ +N+ + + A+ AVVK +AYG G +A AG + V Sbjct: 3 SRAAWVEIDLGAIAHNYGEIRKYIRHEAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAV 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++ E +KLR + +L P I D +L + + + S + G Sbjct: 63 ATISEALKLREAGFTTPLLILGLTKPESSFDIVDADLTQTVCRIDLVQALSAEATAQGKR 122 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + VDTG R+G+ ++A DF +L I SH A AD + Q++ Sbjct: 123 VKVHIAVDTGLGRIGVRPEDAADFAKKITALPGIELEGIFSHFALADIEDKSFSRHQIKL 182 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--T 234 F+ + +A S+ IL P+ HF + R GI YG +HP Sbjct: 183 FQIACTGVEAAGIHIPLRHIAESAAILDLPDVHFDMVRAGILQYGLWPSNEVAHPFYLRP 242 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ARI+ I+ G + YG R++ IA ++GYADGY Sbjct: 243 AMKFCARIVYIKTISPGTSIGYGRHFIAERETRIATISVGYADGYIRA------------ 290 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353 + G I+G I G+I MD M DITD ++GD + +FG D + DD+A + T Sbjct: 291 YACGAVEIRGKRAAIAGRICMDQCMVDITDIPEAKIGDVVTLFGSDTLPADDLAEWANTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 +Y++L + ++ Y Sbjct: 351 SYEVLCLVSKHVSRVY 366 >gi|170079084|ref|YP_001735722.1| alanine racemase [Synechococcus sp. PCC 7002] gi|169886753|gb|ACB00467.1| alanine racemase [Synechococcus sp. PCC 7002] Length = 399 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 107/379 (28%), Positives = 172/379 (45%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID AL N ++ L+ AVVK +AYG G K+A + AG + Sbjct: 30 RQRAWVEIDHQALAANIRALKDILAPQTALMAVVKADAYGHGAVKVAETVLKAGASWLAI 89 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120 ++ EGV+LR A I VL + + I +L P + ++ Q+T +++ G Sbjct: 90 ATLGEGVELREAGITAPILVLGATNTTEEIEAIAHWDLQPTLCNLSQVTIFNEALARLGK 149 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P L++DTG +RLG +EAL F ++ I SH A ADDP Q + Sbjct: 150 TLPVHLKIDTGMSRLGTRWEEALPFVAAVHQAPHLNIASIYSHFATADDPDPTTMDQQHQ 209 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-- 233 RF+ I+ + +++S+ L + H+ L R G+S+YG + S + Sbjct: 210 RFQAAIAKLEQQGIPIPKRHISNSAATLHSRDLHYDLVRLGLSIYGVYPAPHLSPKVHLK 269 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +ARI ++ VSYG + D+ AV IGYADG P LS Sbjct: 270 PVLQVKARITQLKTLPPDTGVSYGHRFITATDTKTAVVGIGYADGVPRRLSN-------- 321 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 K + G P +G ITMD M D++ ++VGD + + G + +D A Sbjct: 322 ---NLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVTLIGTDHDQQLTVDQWANQ 378 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 379 LGTISWEILCGFKHRLPRI 397 >gi|158334044|ref|YP_001515216.1| alanine racemase [Acaryochloris marina MBIC11017] gi|158304285|gb|ABW25902.1| alanine racemase, putative [Acaryochloris marina MBIC11017] Length = 386 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 115/377 (30%), Positives = 176/377 (46%), Gaps = 26/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E + IDL AL+NN + L AVVK + YG G +A G V Sbjct: 13 ERAWVNIDLKALENNVRQIKQQLLPQTALMAVVKADGYGHGAVTVAQTALANGATWLGVA 72 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ EG++LR A I +L H + + I L P + S Q +S+ + Sbjct: 73 TILEGIELRQADINAPILILGATHTVQEIEAIVRWQLQPTLCSPEQALIFSRHLQH--PL 130 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P L+VDTG +RLG Q+ F +++ I SHLA ADD S Q R Sbjct: 131 PIHLKVDTGMSRLGPIWQQGATFIEFVSRLPNLKIASIYSHLATADDADSSFMLQQQSRL 190 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 + ++S + + LA+S+G L+GP +H+ L R G++LYG + ++ +Q V Sbjct: 191 QDVLSRIQAQDIPLPKLHLANSAGTLVGPQFHYDLVRVGLALYGLYPAPHFQQAIALQPV 250 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +ARI I+ AG VSY + +AV IGYADG P +LS + Sbjct: 251 MQVKARITQIKTLPAGSGVSYNHTFTTEQPLTVAVVGIGYADGVPRSLSNQMN------- 303 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 I+G + P +G ITMD M D++D +++VG+ + I G D I + A A G Sbjct: 304 ----VIIRGRLAPQIGAITMDQLMVDVSDVPNLQVGEVVTILGQDGKASISAETWADALG 359 Query: 352 TTNYDLLVRIGTRYAKF 368 T +Y+++ R + Sbjct: 360 TISYEIVCGFKHRLPRI 376 >gi|289624832|ref|ZP_06457786.1| alanine racemase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647733|ref|ZP_06479076.1| alanine racemase [Pseudomonas syringae pv. aesculi str. 2250] gi|330866551|gb|EGH01260.1| alanine racemase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 357 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 165/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLARENSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A + +L G E +I + + V+ S QL + Sbjct: 60 IEEALELRAAGIHAPVLLLEGFFEADELALIVEHDFWTVVHSTWQLEAIEQ-AQLAKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARVVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|229085084|ref|ZP_04217335.1| Alanine racemase [Bacillus cereus Rock3-44] gi|228698209|gb|EEL50943.1| Alanine racemase [Bacillus cereus Rock3-44] Length = 391 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 168/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++++L A+K+N + A VK NAYG G ++A A AGV V V+ Sbjct: 11 VEVNLDAIKHNVREFKKRVNDENMTMMAAVKANAYGHGAVEVAKAAIEAGVNQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 EG++LR I +L K + +++ + + L G Sbjct: 71 EGIELREAGISVPILILGYTPVEAAKDAIEYDIMMTVYRIEDLKGIDEVAKRLGKKARIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F N K ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLEELKNMKHIEMEGVFTHYSTADEIDKTYTNMQTNLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K + L +S+G + N + R GI +YG +H +Q ++ Sbjct: 191 VTTAKEMGIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSQEVAHTVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVATGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP+LG++ MD M D+T+++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVLGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIPVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|257058805|ref|YP_003136693.1| alanine racemase [Cyanothece sp. PCC 8802] gi|256588971|gb|ACU99857.1| alanine racemase [Cyanothece sp. PCC 8802] Length = 403 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 112/379 (29%), Positives = 174/379 (45%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++I+ AL +N + L S AVVK +AYG G K+A +AG + Sbjct: 24 RQRAWVEINQQALIHNVAEIKGLLSPKTALMAVVKADAYGHGAIKVAQTALDAGANGLAI 83 Query: 63 TSVEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ EG++LR A I +L P + I L P + + Q +S +S G Sbjct: 84 ATLGEGIELREAGITAPILILGAINTPEEIAAIAQWQLQPTLCNPQQALIFSGTLSKLGQ 143 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P L++DTG +RLG +A DF +++ I SHLA ADDP Q Sbjct: 144 TLPVHLKLDTGMSRLGTPWHQATDFVRLVQQLPYLKIATIYSHLATADDPDRSEMERQHR 203 Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233 RF+ I+ K A+S+ L+ PN H+ L R G++LYG + ++ Sbjct: 204 RFKQAIAQLKSHGLPLPPLHFANSAATLVNPNLHYDLVRVGLALYGLYPAPHLRSFADLK 263 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +A++ ++ G VSYG Q R +AV IGYADG P LS Sbjct: 264 PVLQVKAKVTQVKTIPPGTGVSYGYQFVSDRTMDVAVVGIGYADGVPRNLSNRL------ 317 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + I+G V +G ITMD M D++ +++VG+ + + G D I DD A Sbjct: 318 -----EVLIRGQRVRQIGAITMDQLMLDVSAIPNLQVGEVVTLIGKDGDQEITADDWANK 372 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 373 LGTISWEILCGFKHRLPRI 391 >gi|330986844|gb|EGH84947.1| alanine racemase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 357 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 165/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A + +L G E +I + N V+ S QL + Sbjct: 60 IEEALELRAAGIHAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQ-AQLARPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQSAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQASRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATLAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|229593333|ref|YP_002875452.1| alanine racemase [Pseudomonas fluorescens SBW25] gi|229365199|emb|CAY53479.1| alanine racemase, catabolic [Pseudomonas fluorescens SBW25] Length = 357 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 106/370 (28%), Positives = 172/370 (46%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AVVK +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLAREVTG-AKALAVVKADAYGHGAVRVAQAL-EADADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + +L V+ S+ QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELPLILEHDLWCVVHSLWQLEAIEQ-AQLRTPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ + +++SH A AD+ + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDFHEAYQRLLASGKVAKIVLMSHFARADELDCVSSDEQVAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240 E SL +S +L P+ RPGI LYG T +Q V+T E+ Sbjct: 179 AARQGLSA-EVSLRNSPSVLGWPSVSSDWVRPGIMLYGATPFGEDQALAARLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG + + I V A+GYADGYP G Sbjct: 238 KVICVRELPAGEPVGYGAKFITPKPMRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG+++MDM D+TD +G ++++G +I D+A A+ T Y + Sbjct: 287 LVAGQRSQLLGRVSMDMLCVDLTDVPQAGLGATVELWGKNILASDIATAAETIPYQIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRLYS 355 >gi|298484845|ref|ZP_07002945.1| Alanine racemase, catabolic [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160699|gb|EFI01720.1| Alanine racemase, catabolic [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 357 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 165/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLARENSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A + +L G E +I + + V+ S QL + Sbjct: 60 IEEALELRAAGIHAPVLLLEGFFEADELALIVEHDFWTVVHSTWQLEAIEQ-AQLAKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|71736924|ref|YP_272530.1| alanine racemase [Pseudomonas syringae pv. phaseolicola 1448A] gi|123638783|sp|Q48PY9|ALR_PSE14 RecName: Full=Alanine racemase gi|71557477|gb|AAZ36688.1| alanine racemase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 357 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 165/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ G + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLAREHRGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + N V+ S QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQ-AQLAKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SF-RKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|268316557|ref|YP_003290276.1| alanine racemase [Rhodothermus marinus DSM 4252] gi|262334091|gb|ACY47888.1| alanine racemase [Rhodothermus marinus DSM 4252] Length = 382 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 147/373 (39%), Gaps = 23/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I L L++N + G A AVVK +AYG G +A L AG++ F V + E Sbjct: 7 VEIHLGHLRHNLEQVRRRLGPAEPIAVVKADAYGHGLVPVARTLQEAGIRHFAVARLSEA 66 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 V+LR I +L P + +SS ++V Sbjct: 67 VELREAGITGSILLLGAAFPEDLAACVAHEVEVTVSSPLLAEAVCAAAPRYGPLRVHVKV 126 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG RLG+ +EA + L + +HLA A+ P QLERF L Sbjct: 127 DTGMGRLGIWPEEAPEIIRRLEQTPGVTLVGLCTHLATAEQPGDPFVQEQLERFEQLWRQ 186 Query: 189 Y---KGIEASLASSSGILLGPNYHFQ---LTRPGISLYGGTDKINKS--HPMQTVVTAEA 240 + S + L +Y R G +LYG + ++ V+ A Sbjct: 187 VGDAFAVRHVANSGALFTLPSSYWSDSRQQARIGAALYGYLPRPELPGADELRPVMRFVA 246 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ +R G +SYG IAV GY DG P LS G+ Sbjct: 247 CIVQVRTVPPGTTISYGRTWTAPGWRRIAVVGAGYGDGIPRRLSNR-----------GQV 295 Query: 301 FIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356 + G+ PI+G + MDMTM D+ D + ++ G+ + FG + +VA + T Y+ Sbjct: 296 GLHGHRFPIVGAVCMDMTMIDLGDPETAPDVQEGEPVVFFGEGGPSIAEVARWAETIPYE 355 Query: 357 LLVRIGTRYAKFY 369 L R + Y Sbjct: 356 LSCAAARRVPRRY 368 >gi|20807662|ref|NP_622833.1| alanine racemase [Thermoanaerobacter tengcongensis MB4] gi|23813662|sp|Q8RAK6|ALR1_THETN RecName: Full=Alanine racemase 1 gi|20516208|gb|AAM24437.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4] Length = 388 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+++ L A+ +N+ + + G N + AV+K +AYG G +A L GV F V Sbjct: 7 RPTRVEVYLDAITHNFREIKKIVGKNVKIMAVIKGDAYGHGASYVAKFLEKEGVDYFGVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122 + EE ++LR + I + P Q + I +L + + K + Sbjct: 67 TTEEALELREKGIKTPILIFGYTPPTQLRQIVKHDLTQTVYDIKYAKELEKESLKQNKRA 126 Query: 123 PYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G + A N + L I SH A A + Q ++ Sbjct: 127 KVHIKIDTGLGRIGYIDFDLAQKEILEMANMRGLILEGIYSHFAAASEDDRDYCKEQFDK 186 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234 F LIS + +A+++ IL H + RPGI L+G + + ++ Sbjct: 187 FMNLISSLEKKRLKIPLKHIANAAAILNLNYSHLDMVRPGIILFGAYPSKRVERKVELRE 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + R++ ++ AG + YG R S+IA +GYADG LS Sbjct: 247 TLRFTTRVVHLKDVPAGFFIGYGKSFVTKRKSVIATIPVGYADGLDRRLSNNY------- 299 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 K +KG VPI+G++ MD M D+TD +E+GD + I G + ++ +A Sbjct: 300 ----KLLLKGKYVPIVGRVCMDQCMIDVTDVEGVEIGDEVVIIGTQNNETVSVESMADKI 355 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T ++ RI R + Y Sbjct: 356 ETIPQEVFSRISRRVPRVY 374 >gi|295697553|ref|YP_003590791.1| alanine racemase [Bacillus tusciae DSM 2912] gi|295413155|gb|ADG07647.1| alanine racemase [Bacillus tusciae DSM 2912] Length = 375 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 94/377 (24%), Positives = 154/377 (40%), Gaps = 24/377 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++DL+A+++N S L+ +A AVVK + YG G +A A AG + V + Sbjct: 9 LTWAEVDLSAIRHNVASFRQLTRDAEIMAVVKADGYGHGAVPVAKAALEAGARRLAVARL 68 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EEG+ LR + I +L I PG + + +L + + + Sbjct: 69 EEGLALRKAGIRVPILILGWIDPGTARELVAGDLEVAVFDPAHIPPLAAAAREVHKRAGV 128 Query: 125 ALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +++DTG R+G + +AL + ++ +H A AD Q +RF Sbjct: 129 HIKIDTGMGRIGWRDMDQALKWAAELNRVPEVEIRGTFTHFAAADAEDLTHARGQWKRFD 188 Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVV 236 + + A+++ L P H+ R GI LYG S ++ + Sbjct: 189 RWVKSLESQGMRPPLIHAANTAAALSLPEAHYDALRVGIGLYGYLPNPGWKGSVVLRPAL 248 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 AR++ ++ G +SYG + I A+GY DG LS Sbjct: 249 RWMARLVYVKWVEPGAAISYGCTYRAPARRRIGTVAVGYGDGLRRGLSN----------- 297 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G + G PI+G++ MD TM D+T+ GD + + G D DD A T Sbjct: 298 AGYMLVHGRRAPIVGRVCMDQTMVDLTNIPEARSGDVVTVLGDDGDESWTADDHARLLDT 357 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y++L IG R + Y Sbjct: 358 ISYEILCGIGKRVPRRY 374 >gi|121602454|ref|YP_989355.1| alanine racemase [Bartonella bacilliformis KC583] gi|120614631|gb|ABM45232.1| alanine racemase [Bartonella bacilliformis KC583] Length = 373 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 187/365 (51%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A+ N+ + A +AVVK NAYG+G EKI+ ALY AG + FFV+ ++E Sbjct: 19 ATIDLGAIIANYKILAQHIAPAECSAVVKANAYGMGAEKISSALYQAGCRTFFVSQIQEA 78 Query: 69 VKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 ++L+ P V L G P E+ + LIPV++S + + P + Sbjct: 79 LQLKTILPSNITLVLLNGFPPTTEEFVAQAGLIPVLNSWHAIESWQMLCQKKHQKFPAII 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E + + I+SHL+ DD + N QL +T + Sbjct: 139 QIDTHMNRLGLDQEELQQLIKQPTIFEKANIKYIMSHLSNGDDATHASNDTQLTAMKTAL 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + SLA+S GI L +++F L RPGI+LYG P++ V+ E ++I R Sbjct: 199 AQLPTCKVSLANSGGIFLNSDFYFDLVRPGIALYGVDPHGKCPTPIKPVLKLETQVIQSR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG +R S + +IGYADG+ TLS G + G+ Sbjct: 259 HVDAGTPVGYGGSFVTSRPSTLTTISIGYADGWLRTLSN-----------KGVVYFNGHK 307 Query: 307 VPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+I+MD T+ D TD ++GD++++ GP ++DVA + T Y++L +G R Sbjct: 308 LPIIGRISMDSTIVDATDLECEKPKIGDWVELIGPHQTVEDVAADADTIPYEILTSLGPR 367 Query: 365 YAKFY 369 + Y Sbjct: 368 CKRIY 372 >gi|17229950|ref|NP_486498.1| alanine racemase [Nostoc sp. PCC 7120] gi|17131550|dbj|BAB74157.1| alanine racemase [Nostoc sp. PCC 7120] Length = 401 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 113/381 (29%), Positives = 174/381 (45%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL +N + LS + AVVK +AYG G +A AG V Sbjct: 29 SQRAWVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGV 88 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM---SC 118 +V EG++LR QA I +L H P Q + I L I S Q +S + Sbjct: 89 ATVPEGIQLREAGIQAPILILGATHTPEQIQAIAQWQLQATIGSPKQALIFSNTLETIQH 148 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++DTG +RLG + Q+A +F ++ + SHLA AD P + Q Sbjct: 149 DSPIPVHIKLDTGMSRLGTNWQQAGEFVQLVERLPHLDIASVYSHLATADSPDPGIMEEQ 208 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232 RF I+ K + LA+S+ L P H+ + R G+++YG + + + Sbjct: 209 HRRFEEAIAQIKTLGIKIPSLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQNKIS 268 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + V+ +ARI ++ AG VSYG Q + +AV +IGYADG P LS Sbjct: 269 LKPVIQVQARITHVKTIAAGTGVSYGHQFIAPHEMRLAVVSIGYADGVPRNLSN------ 322 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + I+G VP +G ITMD M D + ++ G+ + + G I DD A Sbjct: 323 -----KMQVLIRGQRVPQIGAITMDQLMIDASALPDLQEGEIVTLLGKQGKEKITADDWA 377 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 A T ++++L R + Sbjct: 378 EALNTISWEVLCGFKHRLPRV 398 >gi|125975179|ref|YP_001039089.1| alanine racemase [Clostridium thermocellum ATCC 27405] gi|256003157|ref|ZP_05428149.1| alanine racemase [Clostridium thermocellum DSM 2360] gi|281418399|ref|ZP_06249418.1| alanine racemase [Clostridium thermocellum JW20] gi|125715404|gb|ABN53896.1| alanine racemase [Clostridium thermocellum ATCC 27405] gi|255992848|gb|EEU02938.1| alanine racemase [Clostridium thermocellum DSM 2360] gi|281407483|gb|EFB37742.1| alanine racemase [Clostridium thermocellum JW20] gi|316939345|gb|ADU73379.1| alanine racemase [Clostridium thermocellum DSM 1313] Length = 391 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 170/381 (44%), Gaps = 27/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++L + +N + + VVK +AYG G +IA L GV V+ Sbjct: 8 NRAWAEVNLDNIAHNVKEIRRIVDKKVEIMGVVKADAYGHGVMEIARTLLENGVTRLAVS 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++E ++LR + I +L P + + I ++ + S S+ + Sbjct: 68 MLDEAIQLRQNGIKVPILILSYTDPVRAEEIVLNDVTQTVFSHDLAEALSEAAVKHHRNV 127 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG R+G A+ + + +H A AD+ +Q ER Sbjct: 128 KIHIKIDTGMTRVGFMPGYSAVKNVVQISKLPGIIIEGLFTHFASADEADKSYTYMQFER 187 Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233 F +++ I + +S+ ++ P H + RPGI+LYG ++ Sbjct: 188 FMSIVGELNRIGVYIPVKHVCNSAALIEFPEMHLNMVRPGIALYGLYPSDEVDKTKIDLR 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ +A +IL++ +SYG K +R+S IA IGYADGY L+G Sbjct: 248 PAMSLKANVILVKDVEKDTFISYGRIFKTSRNSRIATIPIGYADGYTRLLTG-------- 299 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVAL 348 GK + G + PI+G+I MD M DITD ++VGD + G +IK++D+A Sbjct: 300 ---KGKVLLNGQLAPIVGRICMDQCMVDITDIEGDVKVGDEAVLIGKQKDNEIKVEDLAK 356 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 + GT NY+L+ IG R + Y Sbjct: 357 SVGTINYELVSIIGKRIPRVY 377 >gi|116671442|ref|YP_832375.1| alanine racemase [Arthrobacter sp. FB24] gi|116611551|gb|ABK04275.1| alanine racemase [Arthrobacter sp. FB24] Length = 417 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 99/381 (25%), Positives = 158/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A+++N + A++ A+ AVVK +AYG G +A A AG + V + E Sbjct: 36 AVIDLDAIRHNVRHLAAVASPAQVMAVVKADAYGHGAVPVARAALEAGARWLGVAHISEA 95 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR +A + + S L+V Sbjct: 96 LALRAAGIEAPLLAWLHTPDSNFGAAVAAGIDIGCSGWELEKIVLAAREQERPARVHLKV 155 Query: 129 DTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G +L+ ++ L ++ I SHLA AD+P +QL+ FR + Sbjct: 156 DTGLGRNGATLEAWDSLVGEAMEYQDEGLLRVVGIFSHLAVADEPHRPETDLQLQAFREV 215 Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVT 237 + + LA++ L P+ HF L R G+ +YG + +S ++ +T Sbjct: 216 LAIAEDAGVDPEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFEGQSPAELGLRPAMT 275 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ + AG+ VSYG + S + + +GYADG P V G Sbjct: 276 VRTKVSHCKDVPAGQGVSYGLNYRTAGASTLGLIPLGYADGVPR------------VATG 323 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITD----SLSIEV-GDYIQIFGP----DIKLDDVAL 348 G ++G P++G+I MD + D+ S V G +FG DD A Sbjct: 324 GPVRVEGRNYPVVGRIAMDQMVIDLGPRGVSSGGASVLGAEAVLFGDGTDGGPTADDWAR 383 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 A+GT NY+++ RI R + Y Sbjct: 384 AAGTINYEIVTRISPRVPRRY 404 >gi|254519968|ref|ZP_05132024.1| alanine racemase [Clostridium sp. 7_2_43FAA] gi|226913717|gb|EEH98918.1| alanine racemase [Clostridium sp. 7_2_43FAA] Length = 385 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 103/383 (26%), Positives = 175/383 (45%), Gaps = 25/383 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + +I+L L N + SGN+ VVK NAYG G +I+ L N G+ Sbjct: 1 MNLLHPIWAEINLNNLIYNIDQIKKKSGNSEIIGVVKANAYGHGAVEISKVLLNHGINRL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCG 119 V ++ E ++LR +A I +L + + ++ P IS+ + +K + Sbjct: 61 AVANIVEAIELRENEIKAPIMLLGISEDYAIDALLEYDVEPTISTYEFAMNLNNKANALN 120 Query: 120 VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + + +D+G R+G + L+ N ++ I SH + AD + Q Sbjct: 121 KTVNIHIAMDSGMGRIGFRKNDKGLEDIINISKLSNLKIESIFSHFSTADSKDKSYSLRQ 180 Query: 179 LERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP-- 231 LE + T + + + +L++S+ I+ P H+ RPGI YG Sbjct: 181 LEIYNTFLDKLQEAGVYINKKNLSNSAAIIDLPESHYDYVRPGIIQYGYYPSDEVDKNHF 240 Query: 232 -MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V+T + +II I++ E + YG K +R +++A +GYADGY LS Sbjct: 241 DIKHVLTWKTKIIHIKEVEENEYIGYGQTFKTSRKTVVATLPVGYADGYSRGLSN----- 295 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 GK I G + PI+G + MD M DITD ++ +G+ + + G D DD+ Sbjct: 296 ------KGKVIINGQLAPIIGNVCMDQFMVDITDIENVHLGNEVILLGSDGNVKFDADDI 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A + T +Y++L IG R + Y Sbjct: 350 AKLTNTISYEVLCLIGRRAPRIY 372 >gi|20137211|sp|Q8YU96|ALR_ANASP RecName: Full=Alanine racemase Length = 386 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 113/381 (29%), Positives = 174/381 (45%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL +N + LS + AVVK +AYG G +A AG V Sbjct: 14 SQRAWVEIDLEALSHNVQQLKQFLSPRTQLMAVVKADAYGHGAVTVAQTALQAGASCLGV 73 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM---SC 118 +V EG++LR QA I +L H P Q + I L I S Q +S + Sbjct: 74 ATVPEGIQLREAGIQAPILILGATHTPEQIQAIAQWQLQATIGSPKQALIFSNTLETIQH 133 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++DTG +RLG + Q+A +F ++ + SHLA AD P + Q Sbjct: 134 DSPIPVHIKLDTGMSRLGTNWQQAGEFVQLVERLPHLDIASVYSHLATADSPDPGIMEEQ 193 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232 RF I+ K + LA+S+ L P H+ + R G+++YG + + + Sbjct: 194 HRRFEEAIAQIKTLGIKIPSLHLANSAATLADPRLHYDMVRVGLAVYGLYPAPHLQNKIS 253 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + V+ +ARI ++ AG VSYG Q + +AV +IGYADG P LS Sbjct: 254 LKPVIQVQARITHVKTIAAGTGVSYGHQFIAPHEMRLAVVSIGYADGVPRNLSN------ 307 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + I+G VP +G ITMD M D + ++ G+ + + G I DD A Sbjct: 308 -----KMQVLIRGQRVPQIGAITMDQLMIDASALPDLQEGEIVTLLGKQGKEKITADDWA 362 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 A T ++++L R + Sbjct: 363 EALNTISWEVLCGFKHRLPRV 383 >gi|257481781|ref|ZP_05635822.1| alanine racemase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009415|gb|EGH89471.1| alanine racemase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 357 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 165/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLAREHSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A + +L G E +I + N V+ S QL + Sbjct: 60 IEEALELRAAGIHAPVLLLEGFFEADELALIVEHNFWAVVHSTWQLEAIEQ-AQLARPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQSAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SFRKGLVA-ETSLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQAHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQASRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATLAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|284107226|ref|ZP_06386367.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3] gi|283829973|gb|EFC34252.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3] Length = 386 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 183/373 (49%), Gaps = 23/373 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 IDL AL +N + L+ AV+K N YG G + +A AL GV+ F V SV E Sbjct: 12 AIIDLNALAHNLRELRRVLAPRVDILAVIKANGYGHGYKALAEALSQLGVRRFGVASVHE 71 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126 GV LR + V+ G+ PGQ K + NLIP +S + S+ +S +P + Sbjct: 72 GVLLREAGRLEDVIVMGGMLPGQVKDLVHANLIPTLSDADTMHALSREVSQHDRPYPIHV 131 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +VDTG RLG + +E L + L +++HLA AD+P +QL+RF + Sbjct: 132 KVDTGMRRLGFTTREVLPLLQSPAFSHLLSCQGLMTHLADADNPDPAFTLLQLDRFHETV 191 Query: 187 ----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEA 240 ++ A+++ IL P H + RPG+ LYG T ++ P+ Q V++ Sbjct: 192 SSLPANGPRPWRHAANTAAILWHPRAHLDMVRPGLLLYGYTPAQDRDVPVSLQPVLSLTT 251 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +++ ++ A GE VSYG + RDS +A+ IGYA GY LS G+ Sbjct: 252 KVVHLKTAGKGEPVSYGDLYRTRRDSRLAILPIGYAHGYNRRLSNT-----------GEV 300 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 I PI+G+I MDMT+ D+TD +I+ GD + + G I D+A + Y+ Sbjct: 301 IIHDRRFPIVGRICMDMTVVDVTDDPTIKQGDDVILMGRSATQAITAYDLANWQDSIPYE 360 Query: 357 LLVRIGTRYAKFY 369 +L +G + Y Sbjct: 361 VLCNLGPNVPREY 373 >gi|71279952|ref|YP_269587.1| alanine racemase [Colwellia psychrerythraea 34H] gi|71145692|gb|AAZ26165.1| alanine racemase [Colwellia psychrerythraea 34H] Length = 360 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 188/371 (50%), Gaps = 18/371 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ + I+L AL N+ ++ L+ N+ T AV+K +AYG K+A AL + V+ F V Sbjct: 4 TSRLTQAIINLDALVKNYQYLDNLASNSNTIAVLKADAYGHDASKVAHALSSE-VKVFAV 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 ++E + LR + + +L G +I + N ++ S QL + + S Sbjct: 63 AFIDEALALRDAGIKNTVLILEGPFNESDFEIALENNFALMLHSNYQLEWLKSITP-EFS 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG NRLG +++ + + + + ++ SH A AD + QL + Sbjct: 122 GELWLKVDTGMNRLGFQVEQIDN-VMSQLSAQQINNLVLCSHFATADQIDCARPAKQLAK 180 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239 + L++ + G + S+A+S+GIL P H R G++LYG + KS P+ +T + Sbjct: 181 LKALVAKH-GCKYSMANSAGILNWPESHGHYNRLGLALYGASPIGDSPKSQPLIPAMTLQ 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A II I GE V YG + R++ +A AIGYADGYP G Sbjct: 240 ANIIAIHTVNVGESVGYGNNWQAERETKLATVAIGYADGYPRNAK-----------SGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 FI G P++G+++MDM DITD +GD ++++G ++ +D VA S T NY+LL Sbjct: 289 VFINGAQAPLVGRVSMDMITVDITDLKHTAIGDTVELWGKNLSIDIVAQNSDTINYELLT 348 Query: 360 RIGTRYAKFYT 370 R+ R + +T Sbjct: 349 RVSKRVPRVFT 359 >gi|290958110|ref|YP_003489292.1| alanine racemase [Streptomyces scabiei 87.22] gi|260647636|emb|CBG70741.1| putative alanine racemase [Streptomyces scabiei 87.22] Length = 386 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 164/381 (43%), Gaps = 29/381 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N ++ A + A AVVK +AYG G + A A AG + Sbjct: 13 RARAEIDLDALRANVRTLRARAAGAELMAVVKSDAYGHGAVRCARAAVEAGATWLGTATP 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 EE + LR R+ G + + ++ +S + + G+ Sbjct: 73 EEALALRAAGLSGRLMCWLWAPGGPWREAVEADIDVAVSGLWALREVTDAARAAGLRARV 132 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLER 181 L+ DTG R G + + + + + L +++ + SH ACAD+P QL R Sbjct: 133 QLKADTGLGRNGCAPGDWPELVTEALRAEAEGLVKVTGLWSHFACADEPGHPSIEAQLTR 192 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 FR +I+H + +A+S L P+ F L R GI++YG + + Sbjct: 193 FRDMIAHAEEQGVRPEVRHIANSPATLTLPDARFDLVRTGIAVYGVSPSPELGSAADLGL 252 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ A + L++ AG VSYG + + + +GYADG P SG Sbjct: 253 RPVMRLSASLALVKHVPAGHGVSYGHHYVTPGATTLGLVPVGYADGVPRHASGT------ 306 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G + G + G++ MD + D+ + GD + +FG + +D A Sbjct: 307 -----GPVLVGGKWRTVAGRVAMDQFVVDLGGDEPVA-GDEVVLFGAGDRGEPTAEDWAQ 360 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 A+GT Y+++ RIGTR + Y Sbjct: 361 AAGTIAYEIVTRIGTRVPRVY 381 >gi|212633597|ref|YP_002310122.1| alanine racemase [Shewanella piezotolerans WP3] gi|254802381|sp|B8CIQ9|ALR_SHEPW RecName: Full=Alanine racemase gi|212555081|gb|ACJ27535.1| Alanine racemase [Shewanella piezotolerans WP3] Length = 358 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALK+N ++ L+ +++ AVVK N YG G +A L N F + Sbjct: 3 PFPRAEISRKALKHNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDN--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR A++ +L G G + + ++ V+ QL + Sbjct: 61 LEEALALRTGGVTAKLLLLEGFFRIGDLTTLVEHDIETVVHHESQLEMLESINLT-KPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG S + N + + +++H ACAD+PS+ + Q F Sbjct: 120 VWLKVDSGMHRLGFSPAQFDATYQRLMANDNVAKPIHLMTHFACADEPSNPSTAEQQRVF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 TLI G + +LA+S+G L RPGI+LYG + + H + + Sbjct: 180 DTLIKGLPG-DRTLANSAGALFWQQSQADWIRPGIALYGVSPVFGDLGAKHGLMPAMDLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I IR+ AGE YG +D+ + V AIGY DGYP LG Sbjct: 239 SQLIAIREHKAGESAGYGSYWTAEKDTNLGVVAIGYGDGYPRNA-----------PLGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +VPI+G+++MDM D+ + +VGD ++G ++ +++VA GT Y+L+ Sbjct: 288 VLVNGRIVPIVGRVSMDMLTVDLGIDANDKVGDLAVLWGKELPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|73490240|dbj|BAE19797.1| alanine racemase [Pseudomonas fluorescens] Length = 357 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 103/370 (27%), Positives = 168/370 (45%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYQLAREVTG-AKALAVIKADAYGHGAVRCAQALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A I +L G E +I + + V+ S+ QL + Sbjct: 60 IEEALELRAAGIRAPILLLEGFFEADELPLIVEHDFWCVVHSLWQLDAIEQ-ARLAKPIH 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL + +++SH A AD+ + Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPNDYKAAYQRLQASANVAKIVLMSHFARADELDCTRSVEQVAVFL 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P RPG+ LYG + +Q V+T E+ Sbjct: 179 GARADLTA-EISLRNSPAVLGWPRVPSDWVRPGLMLYGSSPFDEPQATASRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG + + I V A+GYADGYP G Sbjct: 238 KVICVRELPAGEPVGYGARFITPKPMRIGVVAMGYADGYPRQA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 F+ G +LG+++MDM D+TD +G ++++G +I +VA A+ T Y + Sbjct: 287 FVDGVRSQLLGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASEVATAADTIPYQIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-KRVPRLYS 355 >gi|114046202|ref|YP_736752.1| alanine racemase [Shewanella sp. MR-7] gi|123131743|sp|Q0HYW0|ALR_SHESR RecName: Full=Alanine racemase gi|113887644|gb|ABI41695.1| alanine racemase [Shewanella sp. MR-7] Length = 358 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 175/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I +AL+NN + + ++ AVVK N YG G +A L+ F + Sbjct: 3 PFPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHT--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +AR+ +L G ++ ++ V+ Q+ + + Sbjct: 61 LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQ-ATLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG++ ++ + + + +++H ACAD+P ++ VQ++ F Sbjct: 120 VWLKVDSGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENNYTQVQMQTF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NQLTADLPGFRT-LANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R AG+ V YG +D+ + V AIGY DGYP G Sbjct: 239 SRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ + +VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGADAADQVGDEALLWGAALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|261346560|ref|ZP_05974204.1| alanine racemase [Providencia rustigianii DSM 4541] gi|282565263|gb|EFB70798.1| alanine racemase [Providencia rustigianii DSM 4541] Length = 360 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 183/364 (50%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ N+R AVVK NAYG G + + V F V + E + Sbjct: 8 INRRALRHNLQRVRELAPNSRLIAVVKANAYGHGLVGVGTEVQEL-VDGFGVARLNEALL 66 Query: 71 LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G +++ + N+ VI V QL +++D Sbjct: 67 LRHQGINKPIVLLEGFFEQSDLQLMVEYNIDTVIHCVEQLEMLES-AQLAKQIKVWMKLD 125 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 TG +RLG+ Q A F + + I+SH AD P + Q+E F+ +S Sbjct: 126 TGMHRLGVLPQHAESFYQRLQSCQNVDLPINIVSHFCQADAPELPTTAKQIECFQQFVSD 185 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245 G E S+A+S+GILL P H+ RPGI +YG + + KS + V+T ++ +I + Sbjct: 186 KPG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAASFGLLPVMTLKSSLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AG+ V YG + R++L+ V AIGY DGYP V G + G Sbjct: 245 REHSAGQCVGYGETWRSERNTLLGVVAIGYGDGYPRN-----------VPSGTPVLVNGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G+I+MDMT+ D+ + +VGD + ++G + ++++A +G NY+LL ++ +R Sbjct: 294 KVPIIGRISMDMTVVDLGPDSTDKVGDDVILWGNALPVEEIAAQTGIINYELLTKLTSRV 353 Query: 366 AKFY 369 A Y Sbjct: 354 AMEY 357 >gi|146291864|ref|YP_001182288.1| alanine racemase [Shewanella putrefaciens CN-32] gi|254802380|sp|A4Y3F6|ALR_SHEPC RecName: Full=Alanine racemase gi|145563554|gb|ABP74489.1| alanine racemase [Shewanella putrefaciens CN-32] gi|319425098|gb|ADV53172.1| alanine racemase [Shewanella putrefaciens 200] Length = 358 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 174/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I +AL+NN + + ++ AVVK N YG G +A L N F + Sbjct: 3 PFPRAEISSSALQNNLAVLRQQASASQVMAVVKANGYGHGLLNVANCLVN--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +AR+ +L G ++ ++ V+ Q+ ++ Sbjct: 61 LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQVKLT-KPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG++ ++ + + +++H ACAD+P +H VQ+ F Sbjct: 120 VWLKVDSGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NELTAGLPGFRT-LANSAGALYWPKSQGDWIRPGIALYGVSPVAGDCGTNHGLIPAMNLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SRLIAVRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ + +VGD + ++G D+ +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|224367598|ref|YP_002601761.1| Alr [Desulfobacterium autotrophicum HRM2] gi|223690314|gb|ACN13597.1| Alr [Desulfobacterium autotrophicum HRM2] Length = 387 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 161/397 (40%), Gaps = 38/397 (9%) Query: 1 MHSNEFL----RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNA 55 M + +IDL A+ +N ++ AL+ + AVVK +AYG G ++A + Sbjct: 1 MKTENPPASLVWRQIDLDAIAHNLKTLRALTKAHTAVMAVVKADAYGHGAVRVAKKALES 60 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 GV V + E ++LR A I V I + + P + + S+ Sbjct: 61 GVTHLGVARLHEALELRNAGINAPILVFGYIPESDVDTLIALEVSPTVFDLETACMLSER 120 Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQE---------ALDFTHNSFNKKLGQLSLIISHLA 165 +H L+VDTG RLG+ AL ++ I +H A Sbjct: 121 AVAKGTHIKIHLKVDTGMGRLGILPDSRRPSSEKKGALAEVLTISALPGLKIEGIYTHFA 180 Query: 166 CADDPSSHVNSVQLERFRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLY 220 AD Q + F I + GIE L S+ + P HF + R GI++Y Sbjct: 181 AADTLDKGYAEYQHQTFMAFIEGLKHLGIEIPLVHSANSAALIDLPEAHFNMVRAGIAMY 240 Query: 221 GGTDKINKSHPM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 G + + + I ++K VSYG + ++++IA IGYAD Sbjct: 241 GLAPSGEVDIRSLDLRPAMEIHSIITSVKKVPKSFKVSYGMTYETEKETVIAAVPIGYAD 300 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 G+ S G+ ++G PI G++ MD T+ D+ + ++ GD + I Sbjct: 301 GFSRLFSSR-----------GEMIVRGRKAPIAGRVCMDQTLIDVGEIPGVKPGDEVVIL 349 Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 G I D++A GT NY+++ + R K Y+ Sbjct: 350 GTQANQRITADEMAETIGTINYEVISSLTARVPKIYS 386 >gi|91791886|ref|YP_561537.1| alanine racemase [Shewanella denitrificans OS217] gi|122968993|sp|Q12RW2|ALR_SHEDO RecName: Full=Alanine racemase gi|91713888|gb|ABE53814.1| alanine racemase [Shewanella denitrificans OS217] Length = 363 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 174/368 (47%), Gaps = 20/368 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP--ALYNAGVQDFFV 62 F R +I AL+ N + L+ ++ AVVK N YG G +A A Y+ G F + Sbjct: 3 PFPRAEISRKALQANLARIRELAPQSKIMAVVKANGYGHGLLNVANSVATYDQGADGFGL 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 +EE ++LR AR+ +L G ++ ++ V+ Q+ + Sbjct: 63 ARLEEALELRSGGVNARLLLLEGFFRVTDLPLLVQHHIDTVVHHESQVEMLEQAELT-TP 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLE 180 +++DTG +RLG SL + + +++H AC+D+P + Q++ Sbjct: 122 VTVWMKIDTGMHRLGFSLAQFDAIYQRLLACHNIAKPIHLMTHFACSDEPDNSFTQAQID 181 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 F ++ + G + SLA+S G+L P R GI+LYG + + +H + + Sbjct: 182 AFESVTASLDG-DRSLANSGGMLFWPQSQRDWIRAGIALYGVSPMVGDKGGNHGLVPAME 240 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++I ++ AG+ V YG + +D+ I V AIGY DGYP G Sbjct: 241 LKSQLISVKDHQAGDSVGYGAFWRARKDTRIGVVAIGYGDGYPRHA-----------PEG 289 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 ++ G VPI+G+++MDM D+ +VGD + ++G + +++VA GT Y+L Sbjct: 290 TPVWLNGRRVPIVGRVSMDMLTVDLGLDSQDKVGDEVLLWGSALAVEEVADHIGTIAYEL 349 Query: 358 LVRIGTRY 365 + ++ R Sbjct: 350 VTKLTPRV 357 >gi|146305685|ref|YP_001186150.1| alanine racemase [Pseudomonas mendocina ymp] gi|145573886|gb|ABP83418.1| alanine racemase [Pseudomonas mendocina ymp] Length = 358 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+ +N+ + + AVVK NAYG G ++ AL+ F V S Sbjct: 2 RPLAAIVDLSAIAHNYAVAKRCAPGRQAFAVVKANAYGHGVREVVTALHEV-ADGFAVAS 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R +ARI +L G E I + ++ Sbjct: 61 LEEAAEVRAMHGEARILLLEGCFEASEYAIAAQLGLDLVVQSAAQADALLACEPARPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + + ++SH ACAD+ + +Q+ERF Sbjct: 121 WLKLDSGMHRLGFDAASLRQWHARLEMAEQVAELNLLSHFACADERGHPLTELQVERFLD 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 L+ SLA+S+ +L P H RPGI LYG T + + ++ +T AR Sbjct: 181 LLDLDFN-HRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFADFSARELGLKPAMTLAAR 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R S IA + GYADGYP G Sbjct: 240 VIAVRQVAVGESVGYGATWVAERPSRIATVSCGYADGYPRHA-----------PSGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G P+ G+++MDM DITD + + ++++G + +D+VA ASGT Y+LL ++ Sbjct: 289 VDGQRAPLAGRVSMDMLTVDITDLPEVGIDSSVELWGAQLPVDEVAHASGTIGYELLTKV 348 Query: 362 GTRYAKFY 369 R + Y Sbjct: 349 TARVPRRY 356 >gi|218245760|ref|YP_002371131.1| alanine racemase [Cyanothece sp. PCC 8801] gi|218166238|gb|ACK64975.1| alanine racemase [Cyanothece sp. PCC 8801] Length = 403 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 110/379 (29%), Positives = 170/379 (44%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++I+ AL +N + L S AVVK +AYG G K+A +AG + Sbjct: 24 RQRAWVEINQQALIHNVAEIKGLLSPKTALMAVVKADAYGHGAIKVAQTALDAGANGLAI 83 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 ++ EG++LR A I +L I+ +E + PQ L G Sbjct: 84 ATLGEGIELREAGITAPILILGAINTSEEIAAIAQWQLQPTLCNPQQALIFSDTLSKLGQ 143 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P L++DTG +RLG +A DF +++ I SHLA ADDP Q Sbjct: 144 TLPVHLKLDTGMSRLGTPWHQATDFVRLVQQLPYLKIATIYSHLATADDPDRSEMERQHR 203 Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233 RF+ I+ K A+S+ L+ PN H+ L R G++LYG + ++ Sbjct: 204 RFKQAIAQLKSHGLPLPPLHFANSAATLVNPNLHYDLVRVGLALYGLYPAPHLRSFADLK 263 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +A++ ++ G VSYG Q R +AV IGYADG P LS Sbjct: 264 PVLQVKAKVTQVKTIPPGTGVSYGYQFVSDRTMDVAVVGIGYADGVPRNLSNRL------ 317 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + I+G V +G ITMD M D++ +++VG+ + + G D I DD A Sbjct: 318 -----EVLIRGQRVRQIGAITMDQLMLDVSAIPNLQVGEVVTLIGKDGDQEITADDWANK 372 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 373 LGTISWEILCGFKHRLPRI 391 >gi|239825783|ref|YP_002948407.1| alanine racemase [Geobacillus sp. WCH70] gi|239806076|gb|ACS23141.1| alanine racemase [Geobacillus sp. WCH70] Length = 387 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 149/375 (39%), Gaps = 26/375 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +IDL A+ N + L + R AVVK NAYG G ++A AG V + Sbjct: 9 TWAEIDLDAIYYNVSQLKNFLQNDIRIMAVVKANAYGHGDVQVAKTALEAGASYLAVAFL 68 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR A I VL P I + + + + + S + Sbjct: 69 DEAIALRKKGVTAPILVLGACRPSDINIAAKHRITLTVFQPEWIEQAANVYSETSPVLFH 128 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG RLG+ + E L +H A AD+ ++ S Q + F Sbjct: 129 LKMDTGMGRLGVREETETKRVIEQIDRHPYFSLEGAYTHFATADEINTDYFSFQYDNFLR 188 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV----TA 238 ++ + +S+ L P+ F + R GIS+YG + + + + Sbjct: 189 MLEWLPYKPPIIHCGNSATALRFPDKAFNMVRFGISMYGLSPSPEIKQYLPYELKEAFSL 248 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +R++ ++K GE VSYG + + IGYADG+ L Sbjct: 249 HSRLVHVKKLKPGEKVSYGATYTAETEQWVGTVPIGYADGWLRKLQNF------------ 296 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + G PI+G+I MD M + + + G + + G I +DDVA GT N Sbjct: 297 HVLVNGEKAPIIGRICMDQLMVRLPKQMPV--GTKVTLIGRQGDEYISVDDVAQYLGTIN 354 Query: 355 YDLLVRIGTRYAKFY 369 Y++ I R + + Sbjct: 355 YEVPCTISYRVPRIF 369 >gi|312135627|ref|YP_004002965.1| alanine racemase [Caldicellulosiruptor owensensis OL] gi|311775678|gb|ADQ05165.1| alanine racemase [Caldicellulosiruptor owensensis OL] Length = 390 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 160/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL L N ++ + AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWAEIDLDNLVYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + + + + Q + SK G Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSKAAQKIGKKA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLE 180 ++VDTG R+G +++++ N +L I SH + D S Q Sbjct: 128 KIHIKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFM 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHINLK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSIKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 357 IGTINYEVVCSFSKRIPRVY 376 >gi|297201785|ref|ZP_06919182.1| alanine racemase [Streptomyces sviceus ATCC 29083] gi|297147954|gb|EFH28798.1| alanine racemase [Streptomyces sviceus ATCC 29083] Length = 389 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 166/382 (43%), Gaps = 30/382 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N ++ A + A AVVK +AYG G A A AG + + Sbjct: 13 RARAEIDLAALRANVRALRARASGAALMAVVKSDAYGHGAVPCARAAVEAGARWLGTATP 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124 EE + LR RI G + + +L +S + L + GV Sbjct: 73 EEALALRKAGLPGRIMCWLWTPGGPWREAIEADLDVSVSGMWALRELVAAAREAGVPARV 132 Query: 125 ALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+ DTG R G E + + ++ L +++ + SH ACAD+P + QL Sbjct: 133 QLKADTGLGRNGCQPGEDWAELVAEALRAQSEGLLRVTGLWSHFACADEPGHPSITAQLT 192 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHP 231 FR +++H +G +A+S L P HF L R GI+ YG + Sbjct: 193 LFREMLAHAEGRGVRPEVRHIANSPATLTLPESHFDLVRTGIATYGISPSPELGVPGDFG 252 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T A I L+++ G VSYG + D+ + + +GYADG P SG Sbjct: 253 LRPVMTLSASIALVKRVPGGHGVSYGHRYVTPGDTTLGLVPVGYADGIPRHASG------ 306 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 G + G + G+I MD + D+ G +FGP + +D A Sbjct: 307 -----AGPVLVDGKWRTVAGRIAMDQFVVDLGGDEPP-TGTRAVLFGPGDRGEPTAEDWA 360 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 A+GT Y+++ RIGTR + Y Sbjct: 361 QAAGTIAYEIVTRIGTRVPRVY 382 >gi|300854387|ref|YP_003779371.1| alanine racemase [Clostridium ljungdahlii DSM 13528] gi|300434502|gb|ADK14269.1| alanine racemase [Clostridium ljungdahlii DSM 13528] Length = 386 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 165/384 (42%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + +++L L N ++ A + VVK +AYG G +++ L G Sbjct: 1 MFRNYRPVWAEVNLDNLAYNMRNIKAQTMTKEIFGVVKADAYGHGALEVSKVLLENGATR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 V + EG++LR I +L + +L PV+ S S+ + Sbjct: 61 LSVAVLSEGIELRKGGITCPINILGVTPSTLFPDLIGYSLEPVVFSYEYAKSLSEYANSK 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L VD+G R+G E ++ ++ + SH + AD+ + Sbjct: 121 NKKVKVHLAVDSGMGRIGFLPTEHNVEEAVKISKISNIEIESVFSHFSTADEKDKKYSKF 180 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 Q +++R ++ K +++S+ I+ P + RPGI LYG Sbjct: 181 QFDKYRWFVNELKEKGLNIKIRDISNSAAIVDLPETYCDGVRPGIILYGYYPSDEVDKSR 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T +A ++ ++ G+ V YG + K R ++IA +GYADGY LSG Sbjct: 241 LDIKPVMTLKASVVYLKTLNEGQYVGYGRRFKTERRTVIATLPVGYADGYTRILSG---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 K I G + P++G I MD M D+TD +++GD + + G D +D Sbjct: 297 -------KLKVIINGKLAPVIGNICMDQCMIDVTDIEDVKIGDEVILMGSDGKVKFDAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y++L + R + Y Sbjct: 350 IAKLLGTISYEVLCMVNKRVPRVY 373 >gi|307150203|ref|YP_003885587.1| alanine racemase [Cyanothece sp. PCC 7822] gi|306980431|gb|ADN12312.1| alanine racemase [Cyanothece sp. PCC 7822] Length = 407 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 111/379 (29%), Positives = 174/379 (45%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ID AL +N S+ LS + AVVK +AYG G ++A AG + Sbjct: 25 RHRAWIEIDHHALAHNIRSIKQILSPSTALMAVVKADAYGHGAVRVAQTALQAGATWLAI 84 Query: 63 TSVEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ EG++LR A I +L P + I L P + + Q +S+ ++ Sbjct: 85 ATLGEGIELREAGIAAPILILGAINTPAEIATIAQWKLQPTLCNPQQALVFSETLTKLDQ 144 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 S P L++DTG +RLG EA F +++ I SHLA ADDP V +Q + Sbjct: 145 SLPVHLKLDTGMSRLGTIWTEAAAFVQLVQQLPYLKIASIYSHLATADDPDPTVMRLQHQ 204 Query: 181 RFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233 RF I+ K A+S+ L P+ H+ L R G+ LYG + +S ++ Sbjct: 205 RFEAAIAEIKANGITPPRLHFANSAATLTDPSLHYDLVRVGLGLYGLYPAPHLRESVDLK 264 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +AR+ ++ AG VSYG Q R IAV IGYADG LS Sbjct: 265 PVLQVKARVTQVKTIPAGTGVSYGYQFISDRPLRIAVVGIGYADGVQRNLSNRL------ 318 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + ++G + +G ITMD M D+++ ++ G+ + + G D I D+ A Sbjct: 319 -----EVLVRGQRISQIGAITMDQLMLDVSNIPDLQAGEVVTLIGKDQDQEITADEWADK 373 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 374 LGTISWEILCGFKHRLPRV 392 >gi|260770257|ref|ZP_05879190.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972] gi|260615595|gb|EEX40781.1| alanine racemase biosynthetic [Vibrio furnissii CIP 102972] Length = 387 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 174/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL AL++N+ + ALSG+ + AV+K +AYG G ++A AL + F V+ +E Sbjct: 4 AQAHIDLNALQHNYRRLKALSGSQQVVAVIKGDAYGHGAVQLASALPD--ADRFAVSRLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E +LRL I +L G + + + + + L Sbjct: 62 EAEELRLAGITQPILLLEGCFCADDLKRAAELKLDTTIHCEEQLHDLETSTLAHPIHVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTL 185 +VDTG +RLG+ + ++ ISH +CADD + QL F Sbjct: 122 KVDTGMHRLGVQPFQVPEYVSRIERTHKLNEKLGFISHFSCADDINHPTTQRQLACFNQA 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + Y G ++A+S+GIL P F + R GI+L+G + H + V+T R+ Sbjct: 182 TAQYDG-PKTIANSAGILFWPESQFDVARAGIALFGISPSAEHTGRDHALVPVMTLNTRL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK A V YG +D+ I V A+GY DGYP + G F+ Sbjct: 241 IAVRKHQASRPVGYGETWHAQQDTHIGVIAMGYGDGYPRSA-----------PSGTPVFV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +VPI+G+++MDM D+ + +VGD ++++G ++ ++ +A GT Y+L +++ Sbjct: 290 NGRLVPIVGRVSMDMITVDLGPDATDQVGDVVEMWGKNLPIETIANHVGTIPYELTIKLT 349 Query: 363 TRYAKFY 369 R + Y Sbjct: 350 PRVHRHY 356 >gi|154249706|ref|YP_001410531.1| alanine racemase [Fervidobacterium nodosum Rt17-B1] gi|154153642|gb|ABS60874.1| alanine racemase [Fervidobacterium nodosum Rt17-B1] Length = 364 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 161/377 (42%), Gaps = 26/377 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S I++ +N A+ VVK NAYG G ++A A G+ F Sbjct: 1 MES-RRTYAVINVRNYLDNLRFFQTHCAPAKVMPVVKANAYGHGAVQLAKAAQKIGIDYF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR + I V I P I + N+ + S QL Y+K + Sbjct: 60 AVAFLEEAIELRKHGISKDILVFNYIEPDLLHIAMENNITITLYSWEQLWKYTKYV---W 116 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSV 177 +++DTG RLG+ +EA DF S ++ +H A AD Sbjct: 117 RPKAHIKIDTGMRRLGVYPEEAKDFI-ESARNVGFEVEGAYTHFAVADSLDDEDVKFTQQ 175 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVV 236 Q+E+F ++ I+ S + + N F R GI+ YG + S ++ V+ Sbjct: 176 QVEKF-ANLNLDVKIKHLCNSGASVSKIVN-CFDYVRVGIASYGLQPSDSVYSEQLKPVL 233 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + ++ G+ VSYG K + IA +GYADGY LS Sbjct: 234 SWKTTVSHVKTIQPGDSVSYGRTFKAFTEMRIATIPVGYADGYWRHLSN----------- 282 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G I G PI+G++ MD M D+T +++GD + + G I +++A GT Sbjct: 283 KGYVLIHGEKCPIIGRVCMDQFMVDVTHLEDVKIGDEVILIGKQGDNIITAEEIAKLVGT 342 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++ RI R + Y Sbjct: 343 INYEVTCRISERVPRKY 359 >gi|237797761|ref|ZP_04586222.1| alanine racemase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020611|gb|EGI00668.1| alanine racemase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 357 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 106/370 (28%), Positives = 167/370 (45%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AV+K +AYG G ++A AL A F V Sbjct: 2 RPARALIDLQALRHNYQLARESSGG-KALAVIKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A I +L G E +I + +L V+ ++ QL K Sbjct: 60 IEEALELRAAGLRAPILLLEGFFEADELALIVEHDLWTVVHTIWQLEAIEK-ARLDKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E ++++H ACAD+ S ++ Q F Sbjct: 119 VWLKLDTGMHRVGLYPSEYRAAHQRLLASGKVAKVVLMTHFACADELDSPSSAEQYAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240 E SL +S +L P +R GI LYG T + +Q V+T E+ Sbjct: 179 ATCQGL-AAETSLKNSPAVLGWPKIRSDWSRTGIMLYGATPFGQSQPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R + VAA+GYADGYP G Sbjct: 238 KIISVREVPAGEAVGYGATFVSDRPLRVGVAAMGYADGYPRHA-----------PSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T +G ++++G + +VA + T Y + Sbjct: 287 HVDGQRSRLIGRVSMDMLCVDLTGLPQARLGSRVELWGKGVLASEVAAQAETIPYQIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|294139221|ref|YP_003555199.1| alanine racemase [Shewanella violacea DSS12] gi|293325690|dbj|BAJ00421.1| alanine racemase, biosynthetic [Shewanella violacea DSS12] Length = 358 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 177/366 (48%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALKNN + ++ ++ AVVK N YG G +A + + F + Sbjct: 3 PFPRAEISCKALKNNLARLRQIAPASKIMAVVKANGYGHGLLNVAKCIED--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR +++ +L G P + ++ V+ + QL + S Sbjct: 61 LEEAIALRDGGVTSKLILLEGFFRPVDLTTLVMKDIETVVHNEKQLEMLEQ-ASLSKPAN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG +RLG + ++ + ++ + I+SH ACAD+P + QL F Sbjct: 120 VWLKLDTGMHRLGFTPEQFEHVYARLLDCPQVAKPIKIMSHFACADEPDNPYTREQLNIF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G E +LA+S+G L P+ H RPGISLYG + + K+H +Q + Sbjct: 180 NRLAKNLPG-ETTLANSAGTLYWPDSHKDWVRPGISLYGVSPVVGDLGKNHGLQPAMELI 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I IR+ AG+ YG + ++ + V AIGY DGYP G Sbjct: 239 SQLIAIREHKAGDPAGYGCYWRAKEETKLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G +VPI+G+++MDM D+ + +GD ++G + ++ VA GT Y+L+ Sbjct: 288 VWVNGRLVPIVGRVSMDMLTVDLGLDSTDSIGDEAIMWGSALPVEVVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|189425818|ref|YP_001952995.1| alanine racemase [Geobacter lovleyi SZ] gi|189422077|gb|ACD96475.1| alanine racemase [Geobacter lovleyi SZ] Length = 380 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 170/386 (44%), Gaps = 28/386 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + +IDL AL+ N+ + + + + AVVK +AYG G +++ L GV Sbjct: 1 MFDSRPTFAEIDLGALRENYSVVRSSVPSRSAVLAVVKADAYGHGFLEVSKELERQGVDA 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F V + E ++LR + +L GI+PGQE+ + + S+ QL Sbjct: 61 FGVAFLAEAIQLRKAGIDKPVLLLGGIYPGQERKCVGYGISSAVFSLEQLKALDLAAGKL 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VN 175 L+VDTG RLG+ + + L +ISH A AD+ Sbjct: 121 YRKALVHLKVDTGMGRLGIPYDQVPALLNALKLLPNIYLEGVISHFASADELDESGQYFT 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229 +Q ERF + + +A+S+G LL L RPGI+LYG + Sbjct: 181 RLQGERFGWAVEQIRKAGFSPRYIHIANSAGALLNDYPFCNLVRPGIALYGALPSPDFQG 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V+ +++I +++ +SYG + + +LIA +GYADGYP L+ Sbjct: 241 RLSLRPVMRLKSKIAMLKWVEPATTISYGRRFTAEQRTLIASVPVGYADGYPRALTN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK-----L 343 G+ ++G + G + MD M D+T + VGD + + G D K Sbjct: 298 --------KGQVLVRGERAQVSGTVCMDWLMLDVTHIPGVAVGDDVTLIGEDRKGNTVFA 349 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 ++VA +GT Y+LL I R + Y Sbjct: 350 EEVAHWAGTIPYELLCGISKRVPRVY 375 >gi|120600208|ref|YP_964782.1| alanine racemase [Shewanella sp. W3-18-1] gi|254802384|sp|A1RNI3|ALR_SHESW RecName: Full=Alanine racemase gi|120560301|gb|ABM26228.1| alanine racemase [Shewanella sp. W3-18-1] Length = 358 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 174/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I +AL+NN + + ++ AVVK N YG G +A L N F + Sbjct: 3 PFPRAEISSSALQNNLAVLRQQARASQVMAVVKANGYGHGLLNVANCLVN--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +AR+ +L G ++ ++ V+ Q+ ++ Sbjct: 61 LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQVKLT-KPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG++ ++ + + +++H ACAD+P +H VQ+ F Sbjct: 120 VWLKVDSGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NELTAGLPGFRT-LANSAGALYWPKSQGDWIRPGIALYGVSPVAGDCGTNHGLIPAMNLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SRLIAVRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ + +VGD + ++G D+ +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|95930765|ref|ZP_01313498.1| alanine racemase [Desulfuromonas acetoxidans DSM 684] gi|95133245|gb|EAT14911.1| alanine racemase [Desulfuromonas acetoxidans DSM 684] Length = 371 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 110/380 (28%), Positives = 180/380 (47%), Gaps = 22/380 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + IDL AL++N+H + + + R AVVK +AYG G +A L AG Sbjct: 1 MKAYRPTHVAIDLDALRHNYHVLRETMRPDWRMLAVVKADAYGHGAVPVARTLEEAGADL 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F V VEEG++LR I +L G PGQE ++ + +L + + QL Sbjct: 61 FGVAIVEEGLELRAAGITRPILMLGGPWPGQEPVVIEHDLHVAVFEIEQLQRLEHAARQA 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G S L++D+G RLG+ ++ + + QL I++H A AD P + + Q Sbjct: 121 GKSCFCHLKIDSGMGRLGVRDEQLDEVLRFFLASEALQLVGIMTHFALADCPDHPLTAQQ 180 Query: 179 LERFRTLISHYKG---IEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSHPMQ 233 F+ ++ + I + SS+ + + L RPGI+LYGG +++ P++ Sbjct: 181 QAHFKRALAKVRDAGLIPEYIHSSNSAATFSDVNGGCNLVRPGIALYGGQPFEDRTLPLE 240 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ I +++ G VSYG + R +LIA +GYADGY LS Sbjct: 241 PVMALRTEIAHLKQLPTGSGVSYGHRFIAQRPTLIAAIPVGYADGYNRLLSNC------- 293 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 G ++G V + G + MD T+ D+TD +++ GD + + G D + + A Sbjct: 294 ----GTALVRGQKVAVAGTVCMDWTLLDVTDVANVQCGDRVTLLGCDGDECVLAEQWAEK 349 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +I R + Y Sbjct: 350 VGTISYEVFCQISKRVPRHY 369 >gi|260773674|ref|ZP_05882590.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14] gi|260612813|gb|EEX38016.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14] Length = 365 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 18/373 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + + IDL AL+ N + + +++ AVVK N YG G ++A + F Sbjct: 1 MNYMKAAKASIDLQALQYNLQRIKQQAPSSKVMAVVKANGYGHGSCQVARYAQD--ADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V ++E ++LR I +L G + + + TN I + + + Sbjct: 59 GVARIQEALQLRANGIVKPILLLEGFYSAGDLPVLMTNNIQTVVHCEEQLQALERAQLDT 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +RLG+ ++ +F + + +SH CAD+ +S + Q+ Sbjct: 119 PVSVWLKIDSGMHRLGVRPEQHAEFVERLHRCPNVAKPLRYMSHFGCADELNSPITRQQI 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236 E F +L KG E SLA+S+G+L P RPGI LYG + ++ + V+ Sbjct: 179 ELFLSLTEGCKG-ERSLAASAGLLAWPESQLDWVRPGIILYGVSPFAHQDAQAMGYRPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A +I +R+ AGE + YG R++ I V AIGY DGYP T Sbjct: 238 TLTAPLIAVREVKAGESIGYGALWTAQRETKIGVIAIGYGDGYPRTAPN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +VP+ G+++MDM D+ VGD ++G D+ ++ VA GT Y+ Sbjct: 287 GTPVLVNGRIVPMAGRVSMDMLTVDLGPESQDNVGDEAILWGQDLPVERVAEHIGTVGYE 346 Query: 357 LLVRIGTRYAKFY 369 L+ ++ +R Y Sbjct: 347 LVTKLTSRVEMHY 359 >gi|315182757|gb|ADT89670.1| alanine racemase [Vibrio furnissii NCTC 11218] Length = 387 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 107/367 (29%), Positives = 178/367 (48%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL AL++N+ + ALSG+ + AV+K +AYG G ++A AL + F V+ +E Sbjct: 4 AQAHIDLNALQHNYRRLKALSGSQQVVAVIKGDAYGHGAVQLASALPD--ADRFAVSRLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E +LRL I +L G + + + + + L Sbjct: 62 EAEELRLAGITQPILLLEGCFCADDLKRAAELKLDTTIHCEEQLHDLETSTLAHPIHVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VDTG +RLG+ + ++ +KL + ISH +CADD + QL F Sbjct: 122 KVDTGMHRLGVQPFQVPEYVSRIERTRKLSEKLGFISHFSCADDINHPTTQRQLACFNQA 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + Y G ++A+S+GIL P F + R GI+L+G + H + V+T R+ Sbjct: 182 TAQYDG-PKTIANSAGILFWPESQFDVARAGIALFGISPSAEHTGRDHALVPVMTLNTRL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK A V YG +D+ I V A+GY DGYP + G F+ Sbjct: 241 IAVRKHQASRPVGYGETWHAQQDTHIGVIAMGYGDGYPRSA-----------PSGTPVFV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +VPI+G+++MDM D+ + +VGD ++++G ++ ++ +A GT Y+L +++ Sbjct: 290 NGRLVPIVGRVSMDMITVDLGPDATDQVGDVVEMWGKNLPIETIANHVGTIPYELTIKLT 349 Query: 363 TRYAKFY 369 R + Y Sbjct: 350 PRVHRHY 356 >gi|328884469|emb|CCA57708.1| Alanine racemase [Streptomyces venezuelae ATCC 10712] Length = 382 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 168/384 (43%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +IDL AL+ N ++ A + + R AVVK +AYG G + A A +AG Sbjct: 8 RRARAEIDLGALRANVRTLRARVAPHVRIMAVVKADAYGHGAVRCARAALDAGADWLGTA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 + E + LR + + PG + L +S + L + G Sbjct: 68 TPHEALALRAAGITDVPVMCWLWTPGDPWDQGIEAGLDMSVSGMWALEEVVRAARATGGV 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R G + + + + L +++ + SH ACAD+P + Q Sbjct: 128 ARVQLKADTGLGRNGCQPADWPELVGEALKAEAEGLVEVTGLWSHFACADEPHHPSIAAQ 187 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229 L+ FR+++ + + +A+S L P HF L RPGI++YG + Sbjct: 188 LDVFRSMLDYAEKAGVRPEVRHIANSPATLTLPEAHFDLVRPGIAMYGVSPSPELGTSAE 247 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ +A + L+++ AG VSYG ++ + + +GYADG P SG Sbjct: 248 LGLRPVMSLKASVALVKRVPAGHGVSYGHHYVTDAETTLGLVPLGYADGVPRHASGR--- 304 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G + G + + G++ MD + D+ + G +FGP + +D Sbjct: 305 --------GPVLVDGTVRTVAGRVAMDQFVVDLGGDVPA-PGTEAVLFGPGDLGEPTAED 355 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A+A+ T Y+++ RIG R + Y Sbjct: 356 WAVAADTIAYEIVTRIGARVPRVY 379 >gi|160873869|ref|YP_001553185.1| alanine racemase [Shewanella baltica OS195] gi|304411180|ref|ZP_07392795.1| alanine racemase [Shewanella baltica OS183] gi|307306475|ref|ZP_07586218.1| alanine racemase [Shewanella baltica BA175] gi|254802377|sp|A9L126|ALR_SHEB9 RecName: Full=Alanine racemase gi|160859391|gb|ABX47925.1| alanine racemase [Shewanella baltica OS195] gi|304350373|gb|EFM14776.1| alanine racemase [Shewanella baltica OS183] gi|306910766|gb|EFN41194.1| alanine racemase [Shewanella baltica BA175] gi|315266096|gb|ADT92949.1| alanine racemase [Shewanella baltica OS678] Length = 358 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 167/366 (45%), Gaps = 18/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N F R +I +AL+ N ++ + +R AVVK N YG G +A L + F + Sbjct: 2 NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVS--ADGFGLA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR AR+ +L G + + + I + + Sbjct: 60 RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTVLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG + ++ + + +++H ACAD+P + SVQ+ F Sbjct: 120 VWLKVDSGMHRLGFTPEQFSTVYDRLMACSNVAKPIHLMTHFACADEPDNTYTSVQMAAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 TL + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NTLTAGLPGFRT-LANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ +VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|326204287|ref|ZP_08194146.1| alanine racemase [Clostridium papyrosolvens DSM 2782] gi|325985562|gb|EGD46399.1| alanine racemase [Clostridium papyrosolvens DSM 2782] Length = 389 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 100/379 (26%), Positives = 167/379 (44%), Gaps = 27/379 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I L + +N + ++G NA VVK +AYG G ++A L G F V+ Sbjct: 6 NRAWAEISLDNIAHNIREIRRITGKNAEIMGVVKADAYGHGVMEVAKTLLENGASRFAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++E ++LR + I +L P + I + ++ + S S G Sbjct: 66 MLDEAIQLRREGIEVPILILGYTDPRRANEIIENDVTQSVFSHDLAQALSDEAVRQGKKV 125 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG +R+G A+ + + +H A AD+ + + Q ER Sbjct: 126 KIHIKIDTGMSRIGFLPGYSAVKNVVEISRLPNIIIEGLFTHFATADEKNREYTNTQFER 185 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233 F ++ + I + +S+ I+ P H + RPGI LYG + + ++ Sbjct: 186 FMSICCELQRIGIHIPVKHCANSAAIIEYPEMHLDMVRPGIILYGMYPSDDVNKAKIDLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T +A +I++++ +SYG R S IA IGYADG+ LS Sbjct: 246 PAMTLKANVIMVKEVEKNTSISYGRIFTTGRTSKIATIPIGYADGFNRMLSN-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDVAL 348 GK I G P++G++ MD M DITD ++EVGD + + G I +DVA Sbjct: 298 ---KGKVLINGEFAPVVGRVCMDQCMVDITDIGSNVEVGDEVVLIGAQGQNNITAEDVAQ 354 Query: 349 ASGTTNYDLLVRIGTRYAK 367 G NY+L+ +G R + Sbjct: 355 TIGMINYELVCIVGKRIPR 373 >gi|317050883|ref|YP_004111999.1| alanine racemase [Desulfurispirillum indicum S5] gi|316945967|gb|ADU65443.1| alanine racemase [Desulfurispirillum indicum S5] Length = 358 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 169/366 (46%), Gaps = 21/366 (5%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +I L +++N+ + +G+ R VVK +AYG G +A L + G F V V EG+ Sbjct: 7 EIHLPHIRHNFRLLQQRAGHTRIVGVVKADAYGHGDVPVALCLQSEGCTHFAVARVHEGI 66 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 KLR I ++ G P + + + NL V+ +++ G+S P ++++ Sbjct: 67 KLRKAGIHGDILIMSGSFPNEFAALREFNLTTVVYCE---ENIEEMVREGISVPVHIKIN 123 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 TG NRLG + + + + I++H+ACAD+P S Q F + Y Sbjct: 124 TGMNRLGFRPDRLPW-VYRTLTEAGFAVRGIMTHMACADEPGSPTIGAQENLFYRSLEPY 182 Query: 190 KGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 S+S + + L RPGI LYGG +K+ ++ +T + +I+ +++ Sbjct: 183 FQEGMLGHLSNSAGIFTLDNLGSLARPGIMLYGGNPFADKTVDLRPAMTFKTKILQVKRV 242 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 GE +SYG R+ L+A A GYADGY LS + + G P Sbjct: 243 FPGEGISYGHSFVADREMLVATVAAGYADGYSRLLSN-----------KARVLVNGQYAP 291 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTR 364 +G++ MDM+M D+T GD + +FG I ++A GT +Y++ I R Sbjct: 292 QVGRVCMDMSMVDVTHIQPAR-GDEVVLFGEQRGQCIYASELAELMGTIDYEVFCGISPR 350 Query: 365 YAKFYT 370 + YT Sbjct: 351 VKRIYT 356 >gi|157963394|ref|YP_001503428.1| alanine racemase [Shewanella pealeana ATCC 700345] gi|254802379|sp|A8H8K6|ALR_SHEPA RecName: Full=Alanine racemase gi|157848394|gb|ABV88893.1| alanine racemase [Shewanella pealeana ATCC 700345] Length = 358 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 167/366 (45%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I ALKNN ++ L+ +++ AVVK N YG G +A L N F + Sbjct: 3 PFPRAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDN--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR +A++ +L G + + ++ V+ Q+ + Sbjct: 61 LEEALALRAGGVKAKLLLLEGFFRATDLVTLVEHDIETVVHHESQIEMLEQ-AELNKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182 ++VD+G +RLG E + +++H ACAD+P + + Q+ F Sbjct: 120 VWMKVDSGMHRLGFVPDEFHQIYQRLLACDNIAKPINLMTHFACADEPDNDCTAKQIAVF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L G + +LA+S+G L RPGI+LYG + + H + + Sbjct: 180 EELTKDLLG-DRTLANSAGALFWQQSQASWIRPGIALYGVSPVVGDLGTKHGLIPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I IR AG+ V YG +D+ + V AIGY DGYP LG Sbjct: 239 SQLIAIRDHKAGQPVGYGSHWVAEKDTKLGVVAIGYGDGYPRNA-----------PLGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G + PI+G+++MDM D+ VGD ++G D+ +++VA GT Y+L+ Sbjct: 288 VLINGRLAPIVGRVSMDMLTVDLGAGAKDNVGDKAVLWGKDLPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|94500388|ref|ZP_01306920.1| alanine racemase [Oceanobacter sp. RED65] gi|94427423|gb|EAT12401.1| alanine racemase [Oceanobacter sp. RED65] Length = 365 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 173/374 (46%), Gaps = 21/374 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + IDL AL++N+ ++L+ +++ AVVK NAYG G A AL V F V Sbjct: 2 SRPTQAIIDLEALRSNYRLADSLAPQSQSIAVVKANAYGHGAVPCAKALEPI-VPAFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--- 119 S++E ++LR + I +L G G+ +I + +I + L F + Sbjct: 61 SIDEAIELREGGIRKPILLLEGPFSFGEVQIASEHEFWLMIENHNHLAFIEQCEHKKLIC 120 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQ 178 L++D+G +RLG E + + ++ +H A AD Q Sbjct: 121 KPLKCWLKMDSGMHRLGFMPFEIAAIYQKLKSTSIVHDEIVVATHFATADVEGDAFVKEQ 180 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTV 235 ++ F IS + SL +S+G++ P H RPG LYG + H Q+V Sbjct: 181 IDCFNEAISGLGCL-TSLCNSAGVMAWPQAHGSWNRPGFMLYGASPFELPQHNDKTLQSV 239 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++++I +R GE V YG RDS IA +GY DGYP Sbjct: 240 MTLQSKVISVRNVKKGEAVGYGKTWIAQRDSRIATVTVGYGDGYPRHAKN---------- 289 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + + G+++MDM D+TD S+ +GD + +G D+ +++VA SGT Y Sbjct: 290 -GTPILVNNQRCKLAGRVSMDMITVDVTDVGSVNIGDDVICWGKDLPINEVAHYSGTIGY 348 Query: 356 DLLVRIGTRYAKFY 369 +L+ R+ R ++ Y Sbjct: 349 ELMTRMPLRPSRIY 362 >gi|153956178|ref|YP_001396943.1| alanine racemase [Clostridium kluyveri DSM 555] gi|189027531|sp|A5N376|ALR_CLOK5 RecName: Full=Alanine racemase gi|146349036|gb|EDK35572.1| Alr [Clostridium kluyveri DSM 555] Length = 391 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I+L L N + + GN V+K +AYG G +IA L GV V Sbjct: 6 RPVWEEINLDNLVYNIGQIKSKIGNKELIGVIKADAYGHGAVEIAKVLLENGVSRLAVAI 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123 ++E ++LR + I VL I I + ++ P++ S + SKL Sbjct: 66 LDEAIELRKNKIKVPIMVLGIIPHAFLDEIMNYDIEPIVPSYSYASKLSKLAESKDKKIK 125 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G S+ +++ ++ + SH + AD+ + Q +++ Sbjct: 126 VHIALDTGMGRIGFSIDPNSVEEIGKISKLPNIEIQSLFSHFSTADETDKAYSCEQFKKY 185 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234 + L ++++S+ I+ P+ + L RPGI +YG + Sbjct: 186 KLLYEELVKKNVKINMRTISNSAAIMELPDTYCDLVRPGIIMYGYYPSTEVDKNNLSIKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++T +A ++ ++ +G + YG + K R S+IA +GYADGY L G Sbjct: 246 IMTLKANVVYVKVLESGSYIGYGRKFKCNRKSVIATLPLGYADGYTRRLFG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 K I G P++G I MD M D+TD + +GD + + G DD+A + Sbjct: 297 --KAKVIINGKFAPVVGNICMDQCMVDVTDVGEVNIGDEVVLIGEKDGLKFNADDIAEIT 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y++L IG R K Y Sbjct: 355 GTISYEVLCMIGRRVPKLY 373 >gi|256821804|ref|YP_003145767.1| alanine racemase [Kangiella koreensis DSM 16069] gi|256795343|gb|ACV25999.1| alanine racemase [Kangiella koreensis DSM 16069] Length = 364 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 105/370 (28%), Positives = 178/370 (48%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N +++ ++ +R AVVK +AYG G ++A AL + G F V + Sbjct: 2 RSTKAIIDLAALRHNLNTIKTIANGSRVMAVVKADAYGHGLVQVAKALTD-GADMFAVAT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 V+E + LR + I +L GI +++ + +L V+ PQ+ + Sbjct: 61 VQEALSLRKAEIKTPILLLEGIFNAKDLELVVEHDLQVVLHHWPQIEALQNF-NTDKKIQ 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G NRLG +LQ+ L ++SH A ADDP +S QLE F Sbjct: 120 VWVKLDSGMNRLGFALQDLALIESTLSKIPSLANPIRLMSHFASADDPEDEFSSTQLEAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 + E S+A+S+GIL H+ RPG+ LYG + + ++ V++ E Sbjct: 180 DQATKNIT-TEKSMANSAGILTQKGAHYDWVRPGLLLYGCSPLVGSEASDYDLKPVMSLE 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++++ I+ GE YG RD+ + + AIGY DGYP Sbjct: 239 SQVLAIKPIKKGESTGYGRHWFADRDTNLGLVAIGYGDGYPRHARNS-----------TP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G +VP++G+++MDM D+ VGD + ++G ++ + VA + T Y L Sbjct: 288 VWLNGRIVPLVGRVSMDMMAVDLGPDCQDAVGDRVVLWGKELPAESVAPFADTIPYTLFC 347 Query: 360 RIGTRYAKFY 369 + R +FY Sbjct: 348 GVTRRV-RFY 356 >gi|126175832|ref|YP_001051981.1| alanine racemase [Shewanella baltica OS155] gi|254802375|sp|A3D8P9|ALR_SHEB5 RecName: Full=Alanine racemase gi|125999037|gb|ABN63112.1| alanine racemase [Shewanella baltica OS155] Length = 358 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 167/366 (45%), Gaps = 18/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N F R +I +AL+ N ++ + +R AVVK N YG G +A L + F + Sbjct: 2 NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVS--ADGFGLA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR AR+ +L G + + + I + + Sbjct: 60 RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTVLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG + ++ + + +++H ACAD+P + SVQ+ F Sbjct: 120 VWLKVDSGMHRLGFTPEQFSTVYDRLMACPNVAKPIHLMTHFACADEPDNTYTSVQMAAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 +L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NSLTAGLPGFRT-LANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ +VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|217971929|ref|YP_002356680.1| alanine racemase [Shewanella baltica OS223] gi|254802374|sp|B8E9P2|ALR_SHEB2 RecName: Full=Alanine racemase gi|217497064|gb|ACK45257.1| alanine racemase [Shewanella baltica OS223] Length = 358 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 167/366 (45%), Gaps = 18/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N F R +I +AL+ N ++ + +R AVVK N YG G +A L + F + Sbjct: 2 NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVAHCLVS--ADGFGLA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR AR+ +L G + + + I + + Sbjct: 60 RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTVLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG + ++ + + +++H ACAD+P + SVQ+ F Sbjct: 120 VWLKVDSGMHRLGFTPEQFSTVYDRLMACPNVAKPIHLMTHFACADEPDNTYTSVQMAAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 +L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NSLTAGLPGFRT-LANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ +VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|152999256|ref|YP_001364937.1| alanine racemase [Shewanella baltica OS185] gi|254802376|sp|A6WJ85|ALR_SHEB8 RecName: Full=Alanine racemase gi|151363874|gb|ABS06874.1| alanine racemase [Shewanella baltica OS185] Length = 358 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 167/366 (45%), Gaps = 18/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N F R +I +AL+ N ++ + +R AVVK N YG G +A L + F + Sbjct: 2 NPFPRAEISSSALQTNLAALRQQAPASRVMAVVKANGYGHGLLNVANCLVS--ADGFGLA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR AR+ +L G + + + I + + Sbjct: 60 RLDEALELRAGGVTARLLLLEGFFRATDLPLLVGHDIDTVVHHSSQLEMLEQTVLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG + ++ + + +++H ACAD+P + SVQ+ F Sbjct: 120 VWLKVDSGMHRLGFTPEQFSTVYARLMACPNVAKPIHLMTHFACADEPDNSYTSVQMAAF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 +L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NSLTAGLPGFRT-LANSAGALYWPQSQGDWIRPGIALYGVSPVTGDCGANHGLVPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R A + V YG +D+ + V AIGY DGYP G Sbjct: 239 SQLIAVRDHKANQPVGYGCFWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ +VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGQDAQDKVGDSALLWGKALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|312963835|ref|ZP_07778306.1| alanine racemase [Pseudomonas fluorescens WH6] gi|311281870|gb|EFQ60480.1| alanine racemase [Pseudomonas fluorescens WH6] Length = 357 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 171/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AV+K +AYG G ++A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARDVTG-AKALAVIKADAYGHGAVRVAQALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + + V+ S+ QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIIEHDFWCVVHSLWQLEAIEQAALS-KPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ + +++SH A AD+ ++ Q+ F Sbjct: 119 IWLKLDSGMHRVGLHPKDYQEAYQRLLASGKVAKIVLMSHFARADELDCTSSNEQVAVFD 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240 E SL +S +L P+ RPGI LYG T +Q V+T E+ Sbjct: 179 A-ARQGLAAEVSLRNSPAVLGWPSVSSDWVRPGIMLYGATPFGEDQALAARLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG + + I V A+GYADGYP G Sbjct: 238 KVICVRELPAGEPVGYGARFVTPKPMRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG+++MDM D+TD +G ++++G +I DVA+A+ T Y + Sbjct: 287 LVAGQRSQLLGRVSMDMLCVDLTDVPQAGLGSTVELWGKNILASDVAVAADTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 347 L-RRVPRLY 354 >gi|89092607|ref|ZP_01165560.1| alanine racemase [Oceanospirillum sp. MED92] gi|89083119|gb|EAR62338.1| alanine racemase [Oceanospirillum sp. MED92] Length = 358 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 156/368 (42%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I L A+++N+ +++ + A++K NAYG G ++A AL + F V Sbjct: 3 RAATATISLEAIRHNYSLAKSVAPDQGALAIIKANAYGHGAVEVAKALSDI-ADGFGVAC 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR + I +L G E + Sbjct: 62 IEEAIELREAGIKLPILLLEGFFSADELDYISRENLWCAVHSLAQIDIIAAAKIDTPIKI 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG++ + + + + ++++H + AD+P V + Q+ F Sbjct: 122 WLKMDSGMHRLGVAPDDYQEAYQRLNDLTQVKEVVLMTHFSSADEPDLAVTAEQIALFDK 181 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 + + + SLA+S+G + P RPGI LYG T + ++ +T + Sbjct: 182 VTQGIEA-DVSLANSAGTMAYPEARRSWQRPGIMLYGATPFAMPQEVADKLKPAMTLSSE 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R GE V Y + + + A+GYADGYP G Sbjct: 241 VIAVRDLEPGEAVGYSCTWVCDKPTRVGTVAMGYADGYPR-----------YAKSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G I+G+++MDM D+TD EVG Y++ +G ++ ++A T Y L I Sbjct: 290 VNGQKSQIIGRVSMDMLAVDLTDIPDAEVGSYVEFWGDNLAASEIATYCDTIPYTLFTGI 349 Query: 362 GTRYAKFY 369 R K Y Sbjct: 350 TRRVHKKY 357 >gi|315634389|ref|ZP_07889676.1| alanine racemase [Aggregatibacter segnis ATCC 33393] gi|315476979|gb|EFU67724.1| alanine racemase [Aggregatibacter segnis ATCC 33393] Length = 360 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 171/368 (46%), Gaps = 17/368 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH + KI ALK+N ++ + N++ AVVK NAYG G ++ A + V F Sbjct: 1 MHM-KPATAKISSVALKHNIQTIKQKAPNSKIIAVVKANAYGHGVVFVSSA-VESLVDCF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE +KLR I +L G ++ I N I + + + Sbjct: 59 GVARLEEALKLRSNGITKPILLLEGFFSSKDLPILAVNNIQTVVHSQEQLEALEEAQTPN 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQL 179 L++DTG +RLG+ L E F + + +SH + AD+ QL Sbjct: 119 PVKVWLKIDTGMHRLGVHLDEVDSFYQKLKSLPCVDPNIGFVSHFSRADELECGYTEKQL 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237 RF G E S+++S GIL + H RPGI +YG + K + + V+ Sbjct: 179 SRFLQATEGKSG-ERSISASGGILFWQDAHLDWIRPGIIMYGISPNNTAGKEYGLTPVMN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I +R+ GE V YGG +D+ I V AIGY DGYP V G Sbjct: 238 LTSSLIAVREHKKGEPVGYGGVWTSEKDTKIGVVAIGYGDGYPR-----------DVPQG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 ++ G VPI+GK++MDM D+ +VGD + ++G ++ ++++A +G +Y+L Sbjct: 287 TPVYLNGRRVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIAEITGVISYEL 346 Query: 358 LVRIGTRY 365 + ++ R Sbjct: 347 ITKLTPRV 354 >gi|251792441|ref|YP_003007167.1| alanine racemase [Aggregatibacter aphrophilus NJ8700] gi|247533834|gb|ACS97080.1| alanine racemase [Aggregatibacter aphrophilus NJ8700] Length = 360 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 17/368 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH + KI ALK+N ++ + N++ AVVK NAYG G ++ A + V F Sbjct: 1 MHM-KPATAKISSVALKHNIQTIKQKAPNSKIIAVVKANAYGHGVVFLSSA-VESLVDCF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE +KLR I +L G ++ I N I + + + Sbjct: 59 GVARLEEALKLRSNGITKPILLLEGFFSSKDLPILAVNNIQTVVHSKEQLEALERAKTPN 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQL 179 L++DTG +RLG+ L E F + + +SH + AD+ QL Sbjct: 119 PVKVWLKIDTGMHRLGVHLDEVETFYQKLKSLTCVDPNIGFVSHFSRADELECGYTEKQL 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237 RF G E S+++S GIL P H RPGI +YG + K + + V+ Sbjct: 179 ARFLQATEGKSG-ERSISASGGILFWPEAHLDWIRPGIIMYGISPNNTAGKEYGLTPVMN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I +R+ GE V YGG +D+ I V AIGY DGYP V G Sbjct: 238 LTSSLIAVREHKKGEPVGYGGVWVSDKDTKIGVVAIGYGDGYPR-----------DVPEG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 ++ G VPI+GK++MDM D+ +VGD + ++G ++ ++++A +G +Y+L Sbjct: 287 TPVYLNGRRVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIASIAGIISYEL 346 Query: 358 LVRIGTRY 365 + ++ R Sbjct: 347 ITKLTPRV 354 >gi|258625986|ref|ZP_05720851.1| alanine racemase [Vibrio mimicus VM603] gi|258581734|gb|EEW06618.1| alanine racemase [Vibrio mimicus VM603] Length = 375 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 113/375 (30%), Positives = 179/375 (47%), Gaps = 20/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + +++ A VK N YG G IA G F Sbjct: 12 MNYMKAATAYINLDALQHNLQRVKQQAPHSKIMAAVKANGYGHGLRHIARYAL--GADAF 69 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 70 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALEQ-AQLE 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ + Q Sbjct: 129 TPVMVWLKVDSGMHRLGVRPEQYRDFVNRLHQCANVAKPLRYMSHFGCADELDKSTTAEQ 188 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + KS Q V Sbjct: 189 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFAEKSAEELGYQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 248 MTLKSHLIAVREVKAGESVGYGGIWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G VPI G+++MDM D+ + VGD ++G ++ +++VA GT Y Sbjct: 298 -GTPVVVSGRRVPIAGRVSMDMLTVDLGPEATDCVGDEAMLWGRELPVEEVAAHIGTLGY 356 Query: 356 DLLVRIGTRYAKFYT 370 +L+ ++ +R Y+ Sbjct: 357 ELVTKLTSRVEMSYS 371 >gi|117919166|ref|YP_868358.1| alanine racemase [Shewanella sp. ANA-3] gi|254802382|sp|A0KT33|ALR_SHESA RecName: Full=Alanine racemase gi|117611498|gb|ABK46952.1| alanine racemase [Shewanella sp. ANA-3] Length = 358 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 173/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I +AL+NN + + ++ AVVK N YG G +A L+ F + Sbjct: 3 PFPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHT--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +AR+ +L G ++ ++ V+ Q+ + + Sbjct: 61 LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQ-ATLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG++ ++ + + +++H ACAD+P +H VQ++ F Sbjct: 120 VWLKVDSGMHRLGVTPEQFTQVYARLMACDNVAKPIHLMTHFACADEPENHYTQVQMQTF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NQLTADLPGFRT-LANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R AG+ V YG +D+ + V AIGY DGYP G Sbjct: 239 SRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ + VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGADATDLVGDEALLWGAALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|242280765|ref|YP_002992894.1| alanine racemase [Desulfovibrio salexigens DSM 2638] gi|242123659|gb|ACS81355.1| alanine racemase [Desulfovibrio salexigens DSM 2638] Length = 382 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 169/382 (44%), Gaps = 29/382 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++DL+A+ +N+ + L ++ AVVK +AYG G K+A L AG F V Sbjct: 9 PIWAEVDLSAISHNFSEVQRLVNKQSKIMAVVKADAYGHGLTKVADCLNKAGADYFAVAR 68 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGVSHP 123 ++E V LR + + I +L P + +I SS KL + Sbjct: 69 LDEAVALRNHGIEKPILILGYTPPEAATELLKHKVIQTVFSSEYAKDLNEKLNQTNKTLK 128 Query: 124 YALQVDTGFNRLGLSLQ----EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG RLGL + L+ + + +H A +D+ QL Sbjct: 129 VHIKIDTGMGRLGLVDEFNDGAVLESISTINRLPNLETEGVYTHFAASDEADKTSALEQL 188 Query: 180 ERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 ++F+ +++ + S+ +S+ I+ P +F + RPGI LYG ++ Sbjct: 189 KQFKNILAGIERRGISIPLKHAANSAAIIDLPESYFDMVRPGIMLYGLYPSNGVHQQNAE 248 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + +ARI ++ AG +SYG + +A +GYADGY LS Sbjct: 249 LRPAMQIKARIAQTKEVPAGFRISYGHTYTTPNATKLATIPLGYADGYRRQLS------- 301 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 GK + G I+G++ MD ++ D+ ++E GD + I G +I + +A Sbjct: 302 ----SAGKVLVHGQHASIVGRVCMDQSVIDVGKIENVEAGDEVVIIGRQEQAEISAERMA 357 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ + R + + Sbjct: 358 CELGTINYEIVSTLMARVPRIF 379 >gi|212710295|ref|ZP_03318423.1| hypothetical protein PROVALCAL_01354 [Providencia alcalifaciens DSM 30120] gi|212687102|gb|EEB46630.1| hypothetical protein PROVALCAL_01354 [Providencia alcalifaciens DSM 30120] Length = 360 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 178/364 (48%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ N+R AVVK NAYG G + V F V + E + Sbjct: 8 INRRALRHNLQRVRELAPNSRLIAVVKANAYGHGLIGVGTE-IQGSVDGFGVARLNEALL 66 Query: 71 LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G +++ + ++ VI V QL +++D Sbjct: 67 LRHQGVTKPIVLLEGFFEQSDLQLMVEYHIDTVIHCVEQLEMLES-AQLAKKIKVWMKLD 125 Query: 130 TGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 TG +RLG+ Q A F + I+SH AD P Q+E F+ +S Sbjct: 126 TGMHRLGILPQHAESFYQRLQSCSNVDLPINIVSHFCQADAPELPTTQKQIECFQQFVSD 185 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILI 245 G E S+A+S+GILL P H+ RPGI +YG + + KS + V+T ++ +I + Sbjct: 186 KPG-EKSIAASAGILLWPEAHYDWVRPGIMMYGASPQEGKSAASFGLLPVMTLKSTLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AG+ V YG R++ + V AIGY DGYP V G + G Sbjct: 245 REHSAGQCVGYGETWCSERNTRLGVVAIGYGDGYPRN-----------VPSGTPVLVNGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G+I+MDMT+ D+ + +VGD + ++G + ++++A +G NY+LL ++ +R Sbjct: 294 KVPIIGRISMDMTVVDLGPDATDKVGDDVILWGNALPVEEIATQTGIINYELLTKLTSRV 353 Query: 366 AKFY 369 A Y Sbjct: 354 AMEY 357 >gi|218437857|ref|YP_002376186.1| alanine racemase [Cyanothece sp. PCC 7424] gi|218170585|gb|ACK69318.1| alanine racemase [Cyanothece sp. PCC 7424] Length = 403 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 111/379 (29%), Positives = 175/379 (46%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A+ +N H++ LS + AVVK +AYG G K+A AG + Sbjct: 25 RQRAWIEIDHHAIAHNVHAIKQILSPSTELMAVVKADAYGHGALKVAQTALQAGASWLAI 84 Query: 63 TSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ EG++LR A I +L P + I L P + + Q +S+ +S G Sbjct: 85 ATLGEGIELREAGIAAPILILGAINTPEEIATIAHWKLQPTLCNPQQALIFSETLSKIGQ 144 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P L++DTG +RLG EA DF ++ + SHLA ADDP + +Q + Sbjct: 145 TLPVHLKIDTGMSRLGTIWHEAADFVQLVHQLPNLKMKSVYSHLATADDPDPTIMRLQHQ 204 Query: 181 RFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQ 233 RF IS K A+S+ L + H+ L R G+ LYG + + ++ Sbjct: 205 RFEKAISEIKAQGITPPRLHFANSAATLSDRSVHYDLVRVGLGLYGLYPAPHLRSTVDLK 264 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +ARI ++ G VSYG Q R+ IAV IGYADG LS Sbjct: 265 PVLQVKARITQVKTIPPGTGVSYGYQFISDRELRIAVVGIGYADGVSRNLSNRL------ 318 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 + I+G V +G ITMD M D+++ ++ G+ + + G +I D+ A Sbjct: 319 -----EVLIRGKRVRQIGAITMDQLMLDVSNIPHLQAGEVVTLIGKDQDEEITADEWATQ 373 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 374 LGTISWEILCGFKHRLPRV 392 >gi|325964088|ref|YP_004241994.1| alanine racemase [Arthrobacter phenanthrenivorans Sphe3] gi|323470175|gb|ADX73860.1| alanine racemase [Arthrobacter phenanthrenivorans Sphe3] Length = 405 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 152/376 (40%), Gaps = 29/376 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A+++N + A + A+ AVVK +AYG G +A A AG V + E Sbjct: 24 AVIDLDAIRHNVRRLAAAASPAKVMAVVKADAYGHGAVPVARAALEAGASWLGVAHISEA 83 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR A + + S + L+V Sbjct: 84 LALRAAGIDAPLLAWLHTPDSNFGAAVAAGVDIGCSGWELDRIVAAAREQERPARIHLKV 143 Query: 129 DTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G +L ++ L ++ I SHLA AD+P QL FR + Sbjct: 144 DTGLGRNGATLDTWDHIVGEAMEYQDQGLLRVVGIFSHLAVADEPERPETDQQLATFREV 203 Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVT 237 + + LA++ L P+ HF L R G+ +YG + +S ++ +T Sbjct: 204 LAVAEDAGVDPEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFAGQSSAELGLRPAMT 263 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ G+ VSYG + T S + + +GYADG P + G Sbjct: 264 LRTLVSQCKEVPDGQGVSYGLRYHTTGASTLGLIPMGYADGVPR------------IATG 311 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGP----DIKLDDVALASG 351 G + G P++G+I MD + D ++ +G ++FG DD A A+G Sbjct: 312 GPVRVAGRTYPVVGRIAMDQMVIDFGSTVQAGSLLGAEAELFGDGSDGGPTADDWARAAG 371 Query: 352 TTNYDLLVRIGTRYAK 367 T NY+++ RI R + Sbjct: 372 TINYEIVTRISPRVPR 387 >gi|113971579|ref|YP_735372.1| alanine racemase [Shewanella sp. MR-4] gi|123324703|sp|Q0HF52|ALR_SHESM RecName: Full=Alanine racemase gi|113886263|gb|ABI40315.1| alanine racemase [Shewanella sp. MR-4] Length = 358 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 174/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I +AL+NN + + ++ AVVK N YG G +A L+ F + Sbjct: 3 PFPRAEISSSALQNNLAVLRQQASRSQVMAVVKANGYGHGLLNVANCLHT--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +AR+ +L G ++ ++ V+ Q+ + + Sbjct: 61 LEEALELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQ-ATLSKPVT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG++ ++ + + + +++H ACAD+P +H VQ++ F Sbjct: 120 VWLKVDSGMHRLGVTPEQFAQVYARLTACDNVAKPIHLMTHFACADEPENHYTQVQMQTF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + G LA+S+G L P RPGI+LYG + +H + + Sbjct: 180 NQLTADLPGFRT-LANSAGALYWPKSQGDWIRPGIALYGVSPVTGDCGANHGLIPAMNLV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R AG+ V YG +D+ + V AIGY DGYP G Sbjct: 239 SRLIAVRDHKAGQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ + VGD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGADATDLVGDEALLWGAALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|163803116|ref|ZP_02197000.1| alanine racemase [Vibrio sp. AND4] gi|159173108|gb|EDP57940.1| alanine racemase [Vibrio sp. AND4] Length = 358 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 102/364 (28%), Positives = 171/364 (46%), Gaps = 20/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL+AL++N + + N++ VVK N YG G +A + F V +EE ++ Sbjct: 8 IDLSALQHNLQRVKQQAPNSKVMVVVKANGYGHGLRHVAKHATH--ADAFGVARIEEALQ 65 Query: 71 LRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR I +L G + G ++ N+ V+ QL + L++D Sbjct: 66 LRACGVVKPILLLEGFYSLGDLPVLVTNNIQTVVHCEEQLAALEQ-ADLETPVVVWLKID 124 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFRTLISH 188 +G +RLG+ ++ +F +SH CAD+ + + + Q++ F +L + Sbjct: 125 SGMHRLGVRPEQYDEFISRLKECPNVAKPLRYMSHFGCADELDNKITTEQIDLFMSLTAG 184 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILI 245 +G E SLA+S+G+L P RPGI +YG + K + V+T ++ +I + Sbjct: 185 CQG-ERSLAASAGLLAWPQSQLDWVRPGIIMYGVSPFGEKTAQDMGYKPVMTLKSHLIAV 243 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G V YGG RD+ + V A+GY DGYP T G + G Sbjct: 244 RDVKKGASVGYGGIWTSERDTKVGVIAVGYGDGYPRTAPN-----------GTPVLVNGR 292 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI G+++MDM D+ + +V D ++G D+ +++VA GT Y+L+ ++ +R Sbjct: 293 KVPIAGRVSMDMLTVDLGPDATDKVSDEAILWGKDLPVEEVASHIGTIGYELVTKLTSRV 352 Query: 366 AKFY 369 Y Sbjct: 353 EMEY 356 >gi|300869471|ref|ZP_07114054.1| Alanine racemase [Oscillatoria sp. PCC 6506] gi|300332528|emb|CBN59252.1| Alanine racemase [Oscillatoria sp. PCC 6506] Length = 408 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 175/385 (45%), Gaps = 32/385 (8%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++IDL AL +N + +LS VVK +AYG G +A AG V Sbjct: 30 QRAWVEIDLAALAHNVRQLKLSLSPKTALMTVVKADAYGHGAVTVAQTALEAGASWLGVA 89 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++ EG++LR A I +L H P Q + I L P I + Q +S+++ S Sbjct: 90 TIPEGIELRDRGINAPILILGATHTPEQVEAIAHWQLQPTICTPKQALVFSEVLGTLNKS 149 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG +RLG Q+A +F +L+ I SHLA AD P V Q +R Sbjct: 150 LSVHVKLDTGMSRLGSPWQQAAEFVQLVARSPNLELASIYSHLATADSPDFTVMKQQQQR 209 Query: 182 FRTLISHYK------------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 F I++ + LA+S+ L + H+ + R G++ YG + Sbjct: 210 FEGAIANCEIQNSELFLNPKSSPRLHLANSAAALADKSLHYDMVRVGLATYGLYPAPHLQ 269 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ V+ +A++ ++ AG VSYG + R+ +AV IGYADG P LS Sbjct: 270 SVIDLKPVMQVKAKVTQVKTIAAGTGVSYGYKFIADREMRLAVIGIGYADGIPRNLSN-- 327 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K ++G V +G ITMD M D+T +EVG+ + + G D I Sbjct: 328 ---------KMKVLVRGQWVSQVGAITMDQIMLDVTSIPDLEVGEVVTLLGKDGENKISA 378 Query: 344 DDVALASGTTNYDLLVRIGTRYAKF 368 DD A GT ++++L R + Sbjct: 379 DDWAAELGTISWEILCSFKHRLPRI 403 >gi|157373902|ref|YP_001472502.1| alanine racemase [Shewanella sediminis HAW-EB3] gi|254802383|sp|A8FRA1|ALR_SHESH RecName: Full=Alanine racemase gi|157316276|gb|ABV35374.1| Alanine racemase [Shewanella sediminis HAW-EB3] Length = 358 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 174/366 (47%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F R +I AL+NN + ++ ++ AVVK N YG G +A L N F + Sbjct: 3 PFPRAEISSKALQNNLARLREIAPGSKVMAVVKANGYGHGLLNVAHCLDN--ADGFGLAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 EE + LR ++++ +L G + + ++ V+ + QL + Sbjct: 61 PEEALALREGGVKSKLILLEGFFSQVDLTTLVEHDIDTVVHNEVQLELLESSILA-KPAT 119 Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G +RLG + ++ A + ++ + ++SH ACAD+P + VQ+ F Sbjct: 120 VWLKIDSGMHRLGFTPEQFAAVYARLEACPQVAKPINLMSHFACADEPDNPSTKVQINLF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 LI G + SLA+S+G L P RPGI+LYG + + +H + + Sbjct: 180 NDLIKDLPG-QRSLANSAGTLYWPESQADWIRPGIALYGVSPVIGDLGGNHGLMPAMELV 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++I +R AGE V YG D+ + V AIGY DGYP G Sbjct: 239 SQLIAVRDHKAGEPVGYGSSWYAKEDTKLGVVAIGYGDGYPRNA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ + + +GD ++G + +++VA GT Y+L+ Sbjct: 288 VWVNGRRVPIVGRVSMDMLTVDLGINATDLIGDDAILWGKALPVEEVAEHIGTIAYELVT 347 Query: 360 RIGTRY 365 ++ R Sbjct: 348 KLTPRV 353 >gi|91200113|emb|CAJ73156.1| similar to alanine racemase [Candidatus Kuenenia stuttgartiensis] Length = 374 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 172/379 (45%), Gaps = 24/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL+AL++N + G N + VVK NAYG G +I L GV+ + Sbjct: 2 HRPTWAEIDLSALRHNLQEIRRRIGANIKILGVVKANAYGHGDYEIGALLVKNGVEMLGI 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121 +EEGV LR + + + G Q I NL P + + + G + Sbjct: 62 AILEEGVHLREKGITSPLLLFGGFFEEQIDAIIHYNLTPTVYDLTLAEKLAHHAHSAGKT 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + +DTG G+ A + + + I +H + ADD S Q+ Sbjct: 122 VNVHVYIDTGMGGTGVRHDVAFECIKHLTGMNGLVIEGIYTHCSSADDNDSTNTERQIRN 181 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234 F+ +I+ +A++ IL + +F + RPG+SLYG +DK +++ ++ Sbjct: 182 FKDIIAKLDTAGIIIPLKHMANTGSILRYNDSYFTMARPGLSLYGLHVSDKESRNLSVKP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + RII I+ GE + YGG K+TR + +A +GY DGY LS Sbjct: 242 VMSLKTRIIHIKTMEPGETLGYGGSYKITRTTRVATLPLGYDDGYNRLLSNQ-------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G+ ++G VP++G+I MD D+T ++ VGD + I+G I ++ VA Sbjct: 294 ---GRVIVRGNKVPVIGRICMDQCFIDVTTIKNVSVGDEVVIYGRQGKETISIESVAEQR 350 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ + R + Y Sbjct: 351 KTIPYEITCNVSYRVPRIY 369 >gi|90423792|ref|YP_532162.1| alanine racemase [Rhodopseudomonas palustris BisB18] gi|90105806|gb|ABD87843.1| alanine racemase [Rhodopseudomonas palustris BisB18] Length = 407 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 187/364 (51%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW + + + A VVK +AYG G +A AL AG + FFV +++E Sbjct: 33 LSIDLDAIVANWRKLEKTAVPSECAGVVKADAYGCGAGPVARALLAAGCKTFFVATLDEA 92 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127 +LR P A ++VL G P + + PVI S+ +L + S A+ Sbjct: 93 RELRAAAPAAVVYVLDGFLPNCGDAYAELDCQPVIGSLDELAEWDSFCRRSFWKGGAAIH 152 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL + EA ++L++SHLACA+ + +N+ Q FR + S Sbjct: 153 IDTGMNRLGLGIAEAEGIVPRITA-GDHGITLVLSHLACAETLNHPLNAKQASHFRGIAS 211 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL++SSGI LG +HF L RPG +LYG +PMQ VVT ++RI+ +R+ Sbjct: 212 AFSGVPASLSASSGIYLGQQFHFDLVRPGAALYGINPTPEADNPMQPVVTLQSRILQVRE 271 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YG R + IAV A GYADGY D G I G Sbjct: 272 VARGDTVGYGATWTARRPTRIAVVAAGYADGYFRAAGSSDGTR------GADVIIAGQRC 325 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P+ G+I+MD+ D+TD G + G I +D++A GT Y++L +G RY Sbjct: 326 PVAGRISMDLLAVDVTDLPPNAARRGHMATLIGDGITVDELAHHFGTIGYEVLTSLGKRY 385 Query: 366 AKFY 369 A+ Y Sbjct: 386 ARQY 389 >gi|194015919|ref|ZP_03054534.1| alanine racemase [Bacillus pumilus ATCC 7061] gi|194012274|gb|EDW21841.1| alanine racemase [Bacillus pumilus ATCC 7061] Length = 393 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 175/386 (45%), Gaps = 31/386 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56 M +N F R +I+L+A+K+N M G + + AVVK NAYG G ++A A AG Sbjct: 1 MDTNAFYRDTWAEINLSAIKHNVSHMKDHIGQSVQLMAVVKANAYGHGDIEVARAALKAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E V LR +A I VL + P K+ N+I S+ L +K++ Sbjct: 61 ADVLAVAFLDEAVSLRNKGIKAPILVLGAVPPEYVKVAVRYNVIMTAYSIDWLRDVTKMV 120 Query: 117 --SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSH 173 G + L++D+G NRLG+ E ++ ++ QL + +H A AD+ Sbjct: 121 KGQMGQPIRFHLKIDSGMNRLGVKTIEQVNEVKKLVSEHSYLQLEGVFTHFATADEKDEA 180 Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----N 227 Q++ F+TL+ H + A+S+ L + F + R GIS+YG + Sbjct: 181 YFDRQVDTFQTLLEPLHTDKLLVHCANSAAGLRFKDVLFNMVRFGISMYGLSPSEEIKDE 240 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ ++ ++ ++ GE VSYG +D+ I +GYADG+ L Sbjct: 241 LPFKLEEAMSLHTKLAHVKHIQEGESVSYGATYTANQDTWIGTVPVGYADGWIRKL---- 296 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 + + G I G++ MD M ++ D L + G+ + + G + + Sbjct: 297 --------AATEVLVGGKRRKIAGRVCMDQFMIELKDKLPV--GEPVVLIGKQGEDMVSV 346 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 D++A T NY++ IG R + Y Sbjct: 347 DEIAKRLETINYEVTCSIGHRVPRVY 372 >gi|78049364|ref|YP_365539.1| alanine racemase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123584116|sp|Q3BNX4|ALR_XANC5 RecName: Full=Alanine racemase gi|78037794|emb|CAJ25539.1| Alanine racemase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 365 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 165/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLARRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ Q Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATQQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQICPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSALAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRIY 354 >gi|15600495|ref|NP_253989.1| alanine racemase [Pseudomonas aeruginosa PAO1] gi|20137486|sp|Q9HTQ2|ALR2_PSEAE RecName: Full=Alanine racemase, catabolic gi|9951618|gb|AAG08687.1|AE004943_3 catabolic alanine racemase [Pseudomonas aeruginosa PAO1] Length = 357 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 161/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +G AR AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALAAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EEG++LR + I +L G E + + + + S Sbjct: 60 IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G ++ +++SH + AD+ QL F Sbjct: 120 WLKMDSGMHRVGFFPEDFSAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFAA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 +G E SL +S +L P RPGI LYG T ++ V+T E++ Sbjct: 180 ASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YG + R I V A+GYADGYP G F Sbjct: 239 VISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHA-----------ADGTLVF 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 288 IDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRVYS 355 >gi|261867673|ref|YP_003255595.1| alanine racemase [Aggregatibacter actinomycetemcomitans D11S-1] gi|293392262|ref|ZP_06636596.1| alanine racemase [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413005|gb|ACX82376.1| alanine racemase [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952796|gb|EFE02915.1| alanine racemase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 360 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 172/368 (46%), Gaps = 17/368 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH + KI ALK+N ++ + ++ AVVK NAYG G ++ A+ N V F Sbjct: 1 MHM-KPATAKISSVALKHNIQTIKQKAPESKIIAVVKANAYGHGVVFVSSAVENL-VDCF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE +KLR I +L G ++ + N I + + + Sbjct: 59 GVARLEEALKLRSNGITKPILLLEGFFSAKDLPVLAVNNIQTVVHSQEQLDALEQAKTPN 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQL 179 L++DTG +RLG+ L E F + + +SH + AD+ + QL Sbjct: 119 PIKVWLKIDTGMHRLGVHLDEVDAFYQKLKSLPCVDPNIGFVSHFSRADELACGYTEKQL 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237 RF G E S+++S GIL + H RPGI +YG + K + + V+ Sbjct: 179 ARFLQATEGKGG-ERSISASGGILFWQDAHLDWIRPGIIMYGISPNNTAGKEYGLIPVMN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I +R+ GE V YGG +D+ I V AIGY DGYP V G Sbjct: 238 LTSSLIAVREHKKGEPVGYGGVWMSDKDTKIGVVAIGYGDGYPR-----------DVPEG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 ++ G VPI+GK++MDM D+ +VGD + ++G ++ ++++A +G +Y+L Sbjct: 287 TPVYLNGRRVPIVGKVSMDMLTVDLGADSQDKVGDEVILWGKELPIEEIAAITGVISYEL 346 Query: 358 LVRIGTRY 365 + ++ R Sbjct: 347 ITKLTPRV 354 >gi|326939811|gb|AEA15707.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43] Length = 391 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 71 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A T Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENITVEEIADMLSTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|161485772|ref|NP_681250.2| alanine racemase [Thermosynechococcus elongatus BP-1] Length = 383 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 171/381 (44%), Gaps = 25/381 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 H E ++IDL AL N S+ L+ AVVK +AYG G +A + G Sbjct: 11 HECERAWIEIDLAALAANTRSLRQWLAPTTELLAVVKADAYGHGALTVAQTVLAHGATWL 70 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V ++ EG+ LR A I VL ++ P Q +++ L P +S+ Q +S Sbjct: 71 GVATIPEGIALRQAGITAPILVLGSVNLPVQVQMMAQWQLQPTLSTPKQALIFSDYADRL 130 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L +DTG +RLG Q+A+ F ++ I SH A ADDP + + Q Sbjct: 131 REPLDVHLMIDTGMSRLGCPWQDAVGFVQFVQRLPHLRIQGIYSHFASADDPDASLMRQQ 190 Query: 179 LERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HP 231 F + + +A+S+ L + H+ + R G+SLYG + P Sbjct: 191 QAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMVRIGLSLYGVYPASHLRGVVP 250 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ +RI L+++ AG +SYG Q + IAV IGYADG P LS Sbjct: 251 LRPVMQVRSRITLLKEIPAGTGISYGHQFIAPQPMKIAVVGIGYADGVPRLLSN------ 304 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + ++G + +G ITMD M D++D ++ GD + + G D + ++ A Sbjct: 305 -----KLEVLVQGKRLRQVGAITMDQLMIDVSDMDGLQEGDVVTLLGEDGGDCLTVETWA 359 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 A GT +++L R + Sbjct: 360 EALGTITWEILCGFKNRLPRI 380 >gi|107104405|ref|ZP_01368323.1| hypothetical protein PaerPA_01005481 [Pseudomonas aeruginosa PACS2] gi|116053449|ref|YP_793776.1| alanine racemase [Pseudomonas aeruginosa UCBPP-PA14] gi|254238003|ref|ZP_04931326.1| catabolic alanine racemase [Pseudomonas aeruginosa C3719] gi|296392161|ref|ZP_06881636.1| alanine racemase [Pseudomonas aeruginosa PAb1] gi|313106726|ref|ZP_07792943.1| catabolic alanine racemase [Pseudomonas aeruginosa 39016] gi|115588670|gb|ABJ14685.1| catabolic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169934|gb|EAZ55445.1| catabolic alanine racemase [Pseudomonas aeruginosa C3719] gi|310879445|gb|EFQ38039.1| catabolic alanine racemase [Pseudomonas aeruginosa 39016] Length = 357 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 161/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +G AR AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALAAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EEG++LR + I +L G E + + + + S Sbjct: 60 IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G ++ +++SH + AD+ QL F Sbjct: 120 WLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFAA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 +G E SL +S +L P RPGI LYG T ++ V+T E++ Sbjct: 180 ASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YG + R I V A+GYADGYP G F Sbjct: 239 VISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHA-----------ADGTLVF 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 288 IDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRVYS 355 >gi|22294181|dbj|BAC08012.1| alanine racemase [Thermosynechococcus elongatus BP-1] Length = 412 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 171/381 (44%), Gaps = 25/381 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 H E ++IDL AL N S+ L+ AVVK +AYG G +A + G Sbjct: 40 HECERAWIEIDLAALAANTRSLRQWLAPTTELLAVVKADAYGHGALTVAQTVLAHGATWL 99 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V ++ EG+ LR A I VL ++ P Q +++ L P +S+ Q +S Sbjct: 100 GVATIPEGIALRQAGITAPILVLGSVNLPVQVQMMAQWQLQPTLSTPKQALIFSDYADRL 159 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L +DTG +RLG Q+A+ F ++ I SH A ADDP + + Q Sbjct: 160 REPLDVHLMIDTGMSRLGCPWQDAVGFVQFVQRLPHLRIQGIYSHFASADDPDASLMRQQ 219 Query: 179 LERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HP 231 F + + +A+S+ L + H+ + R G+SLYG + P Sbjct: 220 QAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMVRIGLSLYGVYPASHLRGVVP 279 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ +RI L+++ AG +SYG Q + IAV IGYADG P LS Sbjct: 280 LRPVMQVRSRITLLKEIPAGTGISYGHQFIAPQPMKIAVVGIGYADGVPRLLSN------ 333 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + ++G + +G ITMD M D++D ++ GD + + G D + ++ A Sbjct: 334 -----KLEVLVQGKRLRQVGAITMDQLMIDVSDMDGLQEGDVVTLLGEDGGDCLTVETWA 388 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 A GT +++L R + Sbjct: 389 EALGTITWEILCGFKNRLPRI 409 >gi|5690425|gb|AAD47081.1|AF165881_1 catabolic alanine racemase DadX [Pseudomonas aeruginosa PAO1] Length = 357 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 161/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +G AR AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALAAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EEG++LR + I +L G E + + + + S Sbjct: 60 IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G ++ +++SH + AD+ QL F Sbjct: 120 WLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 +G E SL +S +L P RPGI LYG T ++ V+T E++ Sbjct: 180 ASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YG + R I V A+GYADGYP G F Sbjct: 239 VISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHA-----------ADGTLVF 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 288 IDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRVYS 355 >gi|332654151|ref|ZP_08419895.1| alanine racemase [Ruminococcaceae bacterium D16] gi|332517237|gb|EGJ46842.1| alanine racemase [Ruminococcaceae bacterium D16] Length = 372 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 103/383 (26%), Positives = 166/383 (43%), Gaps = 27/383 (7%) Query: 1 MHSNEF-LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M + + +IDL+AL++N+ ++ A+ R V K NAYG G +A L G Sbjct: 1 MDTTKMRTWAEIDLSALEHNYRALRAMLPAGCRFLGVCKANAYGHGAVPVAQKLEQLGAD 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 V V+E +LR I L ++ + + + + S + Sbjct: 61 MLAVACVDEARELRQAGITLPILCLGNTPVELAPMLLEYQVTQAVGDLATGQALSDAAVA 120 Query: 118 CGVSHPYALQVDTGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G + +++DTG +RLG ++ + + +H A AD S Sbjct: 121 AGKTLTIHVKLDTGMSRLGFLWQGEQTAREIARLCALPGLKAEGMFTHFADADS-SEEYT 179 Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229 QL +F + + + +S +L P H + RPGI+LYG Sbjct: 180 MGQLTKFLDARAALEKLGVTFKICHCGASGAVLNYPCTHIDMVRPGIALYGYYPAPEMEG 239 Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ V+T ++RI +R+ AG VSYG L RDS +AV IGY DGYP +LS Sbjct: 240 LDGPGLRPVMTVKSRIAAVRELPAGTCVSYGRTAVLKRDSKLAVVPIGYGDGYPRSLSNR 299 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 I G + PI+G++ MDM M D+TD ++ GD ++GP++ + Sbjct: 300 MVME-----------IHGVLCPIVGRVCMDMCMVDVTDLPDVKPGDIALVYGPELT-EKA 347 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A +GT Y+LL + R + Y Sbjct: 348 ADLTGTIVYELLCDLNPRVPRIY 370 >gi|228997192|ref|ZP_04156817.1| Alanine racemase [Bacillus mycoides Rock3-17] gi|229004853|ref|ZP_04162583.1| Alanine racemase [Bacillus mycoides Rock1-4] gi|228756406|gb|EEM05721.1| Alanine racemase [Bacillus mycoides Rock1-4] gi|228762586|gb|EEM11508.1| Alanine racemase [Bacillus mycoides Rock3-17] Length = 391 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++++L A+K+N + A VK N YG G ++A A AGV V V+ Sbjct: 11 VEVNLDAVKHNVREFKKRVNDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 EG++LR I VL K +++ + + L +++ Sbjct: 71 EGIELREAGVTVPILVLGYTPVEVAKDAIGYDIMMTVYRIEDLKGINEIAKQLEKKAHIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F N K ++ + +H + AD+ + ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKIYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K + L +S+G + N + R GI +YG H +Q ++ Sbjct: 191 VNAAKEMGIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP+LG++ MD M D+T ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGIRVPVLGRVCMDQLMLDVTKAMPVQVGDEVVFYGRQGEEEISVEEIADTLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|15964880|ref|NP_385233.1| putative alanine racemase protein [Sinorhizobium meliloti 1021] gi|307300951|ref|ZP_07580720.1| alanine racemase [Sinorhizobium meliloti BL225C] gi|307321854|ref|ZP_07601240.1| alanine racemase [Sinorhizobium meliloti AK83] gi|20137219|sp|Q92R07|ALR_RHIME RecName: Full=Alanine racemase gi|15074059|emb|CAC45706.1| Putative alanine racemase [Sinorhizobium meliloti 1021] gi|306892523|gb|EFN23323.1| alanine racemase [Sinorhizobium meliloti AK83] gi|306903906|gb|EFN34492.1| alanine racemase [Sinorhizobium meliloti BL225C] Length = 379 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 182/375 (48%), Positives = 242/375 (64%), Gaps = 6/375 (1%) Query: 1 MHSNEFL----RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M S EFL RL +DLTAL +NW +MN SG AR AAV+K +AYGLG APALY AG Sbjct: 1 MQSPEFLSASSRLTVDLTALADNWRAMNERSGKARAAAVLKADAYGLGVVHAAPALYAAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 +DFFV SVEEG LR P RI++L G+ PG E++ F+ +L+P+I+S QL + + Sbjct: 61 ARDFFVASVEEGADLRPLVPDGRIYILAGMWPGNEELFFENDLVPIINSEEQLAVFMAAL 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 S HP L VDTG NRLGLS +EAL H+ L++SHLACADDP +N Sbjct: 121 SERGDHPCVLHVDTGMNRLGLSPEEALALAHDPARPASFSPVLVMSHLACADDPGHPMNR 180 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 QL+RFR + + ++G+ ASLA+S G+ LG +YHF LTRPGI++YGG +PM+ VV Sbjct: 181 YQLQRFREVTAAFEGVPASLANSGGVFLGADYHFDLTRPGIAVYGGEAVNGAVNPMKAVV 240 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 TAEARI+ +R +G SYG + RDS IA AIGYADGY ++SG ++ Sbjct: 241 TAEARIVQVRTVPSGGTASYGASVRFGRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPS 300 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTN 354 G GF+ G VP +G++TMD+++FD+TD V GDYI++FG ++ +DDVA A GT Sbjct: 301 GAFGFLHGMKVPHVGRVTMDLSLFDVTDLPEAAVRAGDYIEVFGRNVVIDDVARAGGTIG 360 Query: 355 YDLLVRIGTRYAKFY 369 Y+LL +G RY + Y Sbjct: 361 YELLTSLGRRYHRTY 375 >gi|330501216|ref|YP_004378085.1| alanine racemase [Pseudomonas mendocina NK-01] gi|328915502|gb|AEB56333.1| alanine racemase [Pseudomonas mendocina NK-01] Length = 357 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 161/368 (43%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ LSG AR AVVK +AYG G + A AL F V Sbjct: 2 RPARALIDLDALRHNYQLARELSG-ARALAVVKADAYGHGAVRCAQALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR A I +L G E + D + + + + Sbjct: 60 IEEALALREAGIGAPILLLEGFFETDELALIDQHDLWCVVHAQWQIEAIEQAQLSKPLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+GL + ++++H A AD+P + QL F+ Sbjct: 120 WLKLDSGMHRVGLHPSDYQQAYRRLLASGKISKIVLMTHFARADEPECERTAEQLAVFQQ 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 E SL +S +L P RPGI LYG T ++ + V+T E++ Sbjct: 180 -AREGLAAEVSLRNSPAVLGWPQVPSDWVRPGIMLYGATPFEQAQEQAARLLPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 239 VISVRELPAGEPVGYGARFVSERPTRVGVVAMGYADGYPRHA-----------PTGTPVM 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G ++G+++MDM D+TD + ++++G + DVA+A+G+ Y + + Sbjct: 288 VDGQPTRLIGRVSMDMLTVDLTDLPQAGLCSRVELWGKQVLASDVAMAAGSIPYQIFCNL 347 Query: 362 GTRYAKFY 369 R Y Sbjct: 348 -RRVPLLY 354 >gi|49258690|pdb|1RCQ|A Chain A, The 1.45 A Crystal Structure Of Alanine Racemase From A Pathogenic Bacterium, Pseudomonas Aeruginosa, Contains Both Internal And External Aldimine Forms Length = 357 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 160/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +G AR AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALAAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EEG++LR + I +L G E + + + + S Sbjct: 60 IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +D+G +R+G ++ +++SH + AD+ QL F Sbjct: 120 WLXMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 +G E SL +S +L P RPGI LYG T ++ V+T E++ Sbjct: 180 ASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YG + R I V A+GYADGYP G F Sbjct: 239 VISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHA-----------ADGTLVF 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 288 IDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRVYS 355 >gi|219856503|ref|YP_002473625.1| hypothetical protein CKR_3160 [Clostridium kluyveri NBRC 12016] gi|219570227|dbj|BAH08211.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 399 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I+L L N + + GN V+K +AYG G +IA L GV V Sbjct: 14 RPVWEEINLDNLVYNIGQIKSKIGNKELIGVIKADAYGHGAVEIAKVLLENGVSRLAVAI 73 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123 ++E ++LR + I VL I I + ++ P++ S + SKL Sbjct: 74 LDEAIELRKNKIKVPIMVLGIIPHAFLDEIMNYDIEPIVPSYSYASKLSKLAESKDKKIK 133 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G S+ +++ ++ + SH + AD+ + Q +++ Sbjct: 134 VHIALDTGMGRIGFSIDPNSVEEIGKISKLPNIEIQSLFSHFSTADETDKAYSCEQFKKY 193 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QT 234 + L ++++S+ I+ P+ + L RPGI +YG + Sbjct: 194 KLLYEELVKKNVKINMRTISNSAAIMELPDTYCDLVRPGIIMYGYYPSTEVDKNNLSIKP 253 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++T +A ++ ++ +G + YG + K R S+IA +GYADGY L G Sbjct: 254 IMTLKANVVYVKVLESGSYIGYGRKFKCNRKSVIATLPLGYADGYTRRLFG--------- 304 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 K I G P++G I MD M D+TD + +GD + + G DD+A + Sbjct: 305 --KAKVIINGKFAPVVGNICMDQCMVDVTDVGEVNIGDEVVLIGEKDGLKFNADDIAEIT 362 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y++L IG R K Y Sbjct: 363 GTISYEVLCMIGRRVPKLY 381 >gi|330890950|gb|EGH23611.1| alanine racemase [Pseudomonas syringae pv. mori str. 301020] Length = 357 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 164/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG A +K +AYG G ++A AL A F V Sbjct: 2 RPARAFIDLQALRHNYQLAREHSGGKALAG-IKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G E +I + N V+ S QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHNFWTVVHSTWQLEAIEQ-AQLAKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+GL E +++SH A AD+ +S + Q F Sbjct: 119 VWLKIDTGMHRVGLYPHEYQAAYQRLLVTGKVARIVLMSHFARADELNSGCSDEQFAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P+ +RPGI LYG T +Q V+T E+ Sbjct: 179 SF-RKGLAAEISLKNSPAVLGWPHIPSDWSRPGIMLYGATPFGQPHPLADRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II +R+ AGE V YG R I V A+GYADGYP G Sbjct: 238 KIISVRELPAGEAVGYGATFVCDRPLRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +LG+++MDM D+T +G ++++G + +VA + T Y++ Sbjct: 287 QIDGQPSRLLGRVSMDMLCVDLTGVPQAGLGSRVELWGKHVLASEVATRAETIPYEIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-RRVPRIYS 355 >gi|220913351|ref|YP_002488660.1| alanine racemase [Arthrobacter chlorophenolicus A6] gi|219860229|gb|ACL40571.1| alanine racemase [Arthrobacter chlorophenolicus A6] Length = 437 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 29/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A+++N + A + A+ AVVK +AYG G +A A AG V + E Sbjct: 51 AVIDLDAIRHNVRRLAAAASPAKVMAVVKADAYGHGAVPVARAALEAGASWLGVAHISEA 110 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR A + + S + L+V Sbjct: 111 LALRAAGIDAPLLAWLHTTDSNFGAAVAAGVDIGCSGWELERIVAAAREQERPARIHLKV 170 Query: 129 DTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G +L+ ++ L ++ I SHLA AD+P QL FR Sbjct: 171 DTGLGRNGATLEYWDTLVGEAMEYQDQGLLRVVGIFSHLAVADEPERPETDHQLAAFRDA 230 Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 + + LA++ L P+ HF L R G+ +YG + + ++ + Sbjct: 231 LAVAEDAGVDAEVRHLANTPATLSRPDTHFDLVRVGLGIYGLSPFDGQTSAELGLRPAMA 290 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ + AG+ VSYG + S + + +GYADG P V G Sbjct: 291 LRTKVSQCKVVPAGQGVSYGLHYRTAAASTLGLIPLGYADGIPR------------VATG 338 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGP----DIKLDDVALASG 351 G + G P++G+I MD + D+ + +G ++FG DD A A+G Sbjct: 339 GPVRVAGTTYPVVGRIAMDQMVIDLGQGVQGAALLGAEAELFGSGADGGPTADDWARAAG 398 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+++ RI R + + Sbjct: 399 TINYEIVTRISPRVPRRF 416 >gi|218897074|ref|YP_002445485.1| alanine racemase [Bacillus cereus G9842] gi|218544621|gb|ACK97015.1| alanine racemase [Bacillus cereus G9842] Length = 391 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 71 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ + + + +S+G + N + R GI +YG H +Q ++ Sbjct: 191 VNTARELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|107104029|ref|ZP_01367947.1| hypothetical protein PaerPA_01005102 [Pseudomonas aeruginosa PACS2] gi|218894025|ref|YP_002442894.1| biosynthetic alanine racemase [Pseudomonas aeruginosa LESB58] gi|254244178|ref|ZP_04937500.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 2192] gi|126197556|gb|EAZ61619.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 2192] gi|218774253|emb|CAW30070.1| biosynthetic alanine racemase [Pseudomonas aeruginosa LESB58] Length = 358 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRRYS 357 >gi|312621900|ref|YP_004023513.1| alanine racemase [Caldicellulosiruptor kronotskyensis 2002] gi|312202367|gb|ADQ45694.1| alanine racemase [Caldicellulosiruptor kronotskyensis 2002] Length = 390 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 159/380 (41%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL L N ++ AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWAEIDLDNLVYNLENIKKKILPQTHIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + + + + Q + S+ G Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSQAAQKIGKKA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLE 180 ++VDTG R+G +++++ N +L I SH + D S Q Sbjct: 128 KIHIKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFM 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHISIK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 357 IGTINYEVVCSFSKRIPRVY 376 >gi|228991111|ref|ZP_04151071.1| Alanine racemase [Bacillus pseudomycoides DSM 12442] gi|228768647|gb|EEM17250.1| Alanine racemase [Bacillus pseudomycoides DSM 12442] Length = 391 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 168/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++++L A+K+N + A VK N YG G ++A A AGV V V+ Sbjct: 11 VEVNLDAVKHNVREFKKRVNDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 EG++LR I VL K +++ + + L +++ Sbjct: 71 EGIELREAGVTVPILVLGYTPVDVAKDAIGYDIMMTVYRIEDLKGINEIAKQLEKKAHIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F N K ++ + +H + AD+ + ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKTYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K ++ L +S+G + N + R GI +YG H +Q ++ Sbjct: 191 VNTAKEMDIHLPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKLAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP+LG++ MD M D+T ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGIRVPVLGRVCMDQLMLDVTKAMPVQVGDEVVFYGRQGEEEISVEEIADTLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|83644553|ref|YP_432988.1| alanine racemase [Hahella chejuensis KCTC 2396] gi|123534099|sp|Q2SLB1|ALR_HAHCH RecName: Full=Alanine racemase gi|83632596|gb|ABC28563.1| alanine racemase [Hahella chejuensis KCTC 2396] Length = 374 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 104/378 (27%), Positives = 172/378 (45%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N +N+++ NAR AAV+K +AYG G +IA AL V Sbjct: 2 RPSRALIDLDALRHNIRLLNSIAHNARCAAVIKADAYGHGAVEIARAL-KGEAPKLAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMSCGVSH 122 +E V LR + VL G + +E V+ + QL S++ + Sbjct: 61 YDEAVSLREAGVTTPLLVLEGFYSSEELADSTRWCDIEWVVHDMEQLDMLSEVAPLRKAG 120 Query: 123 P------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 P ++++TG NRLGL L + + +++H ACAD+ S + Sbjct: 121 PDSTRMQTWIKLNTGMNRLGLPLNKLAHVAEKLQQFPGLSVIGLMTHFACADELDSLLQQ 180 Query: 177 VQLERFR--TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHP 231 Q F+ + G S A+S+ +L P H RPGI++YG + +K Sbjct: 181 RQWRAFQAGMQAAGANGWSYSSANSAALLQYPETHLDWVRPGIAMYGASPMADKTGADFG 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T E+R+I R+ AG+ + YG + + V A+GY DGYP + Sbjct: 241 LKPVMTFESRLIATRELQAGDSIGYGAAWTADAPTRMGVVAVGYGDGYPRQMQN------ 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G + G I+G+++MDM DI+ +G ++++G + D+VA + Sbjct: 295 -----GAPVAVCGKRTKIIGRVSMDMLTVDISHIPEARIGSEVELWGGTVSADEVAGYAS 349 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y L + +R + Y Sbjct: 350 TISYTLFTGMTSRVPRVY 367 >gi|172038632|ref|YP_001805133.1| alanine racemase [Cyanothece sp. ATCC 51142] gi|171700086|gb|ACB53067.1| alanine racemase [Cyanothece sp. ATCC 51142] Length = 404 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 113/379 (29%), Positives = 166/379 (43%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL+AL +N + L S AVVK +AYG G +A + AG + V Sbjct: 25 RQRAWVEIDLSALSHNVVQIKQLLSPKTTLMAVVKADAYGHGAIAVAQTVLQAGAKALAV 84 Query: 63 TSVEEGVKLRLYTPQARIFVLY-GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 ++ EG++LR A I +L P + I NL P + Q S + Sbjct: 85 ATLGEGIELREAGITAPILILGAINTPEEITAIAHWNLEPTLCYPEQALMVSDTLSQYEK 144 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++DTG +RLG + +F LS + SHLA ADDP +Q + Sbjct: 145 PLSVHLKLDTGMSRLGTPWHQGTEFASLVQQLPYLNLSSVYSHLATADDPDPSHMYLQHK 204 Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233 RF+T I A+S+ L+ P H+ L R G++LYG + P++ Sbjct: 205 RFKTAIDNLKAQGIVPPRLHFANSAATLIAPQLHYDLVRVGLALYGLYPADHLRSIVPLK 264 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +A+I I+ A VSYG Q R IAV IGYADG P LS Sbjct: 265 PVLQVKAKITQIKSIPANTGVSYGYQFVSDRPMKIAVVGIGYADGVPRNLSNRL------ 318 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + I G +G ITMD M D++ ++VGD + + G D I D A Sbjct: 319 -----QVLIHGQRACQIGAITMDQLMLDVSHLRHVKVGDVVTLIGKDEDQEISADHWAKM 373 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 374 LGTISWEILCGFKHRLPRI 392 >gi|228939234|ref|ZP_04101827.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972113|ref|ZP_04132729.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978725|ref|ZP_04139096.1| Alanine racemase [Bacillus thuringiensis Bt407] gi|228780986|gb|EEM29193.1| Alanine racemase [Bacillus thuringiensis Bt407] gi|228787597|gb|EEM35560.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820429|gb|EEM66461.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 408 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A T Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENITVEEIADMLSTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|313896008|ref|ZP_07829562.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975433|gb|EFR40894.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430] Length = 368 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 160/376 (42%), Gaps = 22/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++I+L A+ +N+ + +A+ AVVK +AYG G +A AG + + Sbjct: 3 SRAAWVEINLGAIAHNYSEIRKHIQKDAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAL 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++ E +KLR + +L I D ++ + + S C + Sbjct: 63 ATISEALKLREAGFTTPLLILGLTKAENSFDIVDADITQTVCRLDLAEALSAEAVCQNKT 122 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G+ ++A + +L + SH A AD Q+ Sbjct: 123 VKVHLAVDTGLGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTADKSFAMQQVRL 182 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234 F + +A S+ IL P+ HF + R GI YG + P+ Sbjct: 183 FAEACDAIERAGIHIPIRHIAESAAILDLPDVHFDMVRAGIIQYGIWPSNEVTRPITLHP 242 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ARI+ I+ G+ V YG R++ IA ++GYADG+ Sbjct: 243 AMKFCARIVYIKTVAPGDSVGYGRAFIAPRETRIATISVGYADGFLRA------------ 290 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353 + GG + G PI G+I MD M D+TD +GD + +FG + + D+VA +GT Sbjct: 291 YAGGSVELHGRRAPIAGRICMDQCMIDVTDIPEAAIGDVVTLFGSETLTADEVAARAGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 +Y++L + ++ Y Sbjct: 351 SYEVLCLVSKHVSRIY 366 >gi|296391770|ref|ZP_06881245.1| alanine racemase [Pseudomonas aeruginosa PAb1] Length = 358 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 169/369 (45%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + +ISH ACAD+ + QLE F Sbjct: 121 WLKLDSGMHRLGFDPVALRAWHARLRNHPGVRELNLISHFACADERNHPFTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPTRIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGARLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRRYS 357 >gi|218234797|ref|YP_002366787.1| alanine racemase [Bacillus cereus B4264] gi|296502685|ref|YP_003664385.1| alanine racemase [Bacillus thuringiensis BMB171] gi|218162754|gb|ACK62746.1| alanine racemase [Bacillus cereus B4264] gi|296323737|gb|ADH06665.1| alanine racemase [Bacillus thuringiensis BMB171] Length = 391 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 71 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|316933684|ref|YP_004108666.1| alanine racemase [Rhodopseudomonas palustris DX-1] gi|315601398|gb|ADU43933.1| alanine racemase [Rhodopseudomonas palustris DX-1] Length = 415 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 182/364 (50%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + + + A VVK +AYG G + AL AG + FFV ++ E Sbjct: 36 LTIDLDALVANWRKLEKTAVPSECAGVVKGDAYGCGAGPVVKALLGAGCKTFFVATLGEA 95 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R P+A ++VL G P N PVI + +L + G AL Sbjct: 96 RAVREVAPEATLYVLDGFFPYSGDEFARLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG +RLGL++ EA ++L++SHLACAD + +N+ Q+ FR + Sbjct: 156 IDTGMSRLGLTITEAQGIVPRIVA-GDHGITLVMSHLACADLVNHPLNARQVTAFREIAG 214 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL++SSGI LGP + F L RPG +LYG +PMQ VV +ARI+ +R Sbjct: 215 QFTGVSASLSASSGIFLGPQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YG R S IAV + GYADGY D G + I G Sbjct: 275 VERGDTVGYGATWSARRPSKIAVLSAGYADGYFRAAGSSDGTR------GAEVIIAGERC 328 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI G+I+MD+ D+TD + G + G I +D++ GT Y++L +G RY Sbjct: 329 PIAGRISMDLLAVDVTDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGPRY 388 Query: 366 AKFY 369 + Y Sbjct: 389 TRIY 392 >gi|16331712|ref|NP_442440.1| alanine racemase [Synechocystis sp. PCC 6803] gi|1001266|dbj|BAA10510.1| alanine racemase [Synechocystis sp. PCC 6803] Length = 400 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 110/379 (29%), Positives = 169/379 (44%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID AL +N AVVK +AYG G ++A AG + Sbjct: 31 RQRAWVEIDQAALVHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQTALQAGADWLAI 90 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGV 120 ++ EG++LR A I +L GI+ P + + I L P + S Q ++ + + G Sbjct: 91 ATLGEGIELREAGITAPILLLGGINSPEEIEAIAHWRLQPTLCSPEQAQLFNDILLKLGK 150 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 P L++DTG RLG +A +F + +L+ + SHLA ADDP++ Q E Sbjct: 151 VLPVHLKLDTGMTRLGTPWPQAANFVGLVQSLPQLRLASLYSHLATADDPNTATMLQQQE 210 Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQ 233 RF I + + LA+S+ L G +H+ + R G+ LYG + ++ Sbjct: 211 RFAKAIASLRQARLPIPKLHLANSAATLHGQAWHYDMVRVGLGLYGLYPAPHLGDCLDLK 270 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T A+I IR G VSYG Q +AV IGYADG P LS Sbjct: 271 PVLTVRAKITQIRTIPPGTGVSYGHQFVSEETMPMAVVGIGYADGVPRNLSNQL------ 324 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + ++G V +G ITMD M D+ +VG+ + + G D I D A Sbjct: 325 -----EVLLRGQPVRQIGAITMDQMMVDLRGIDDPQVGEVVTLIGQDGDRQITADHWAST 379 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 380 LGTISWEILCGFKHRLPRI 398 >gi|229043862|ref|ZP_04191559.1| Alanine racemase [Bacillus cereus AH676] gi|228725487|gb|EEL76747.1| Alanine racemase [Bacillus cereus AH676] Length = 408 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLDAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|206972055|ref|ZP_03233003.1| alanine racemase [Bacillus cereus AH1134] gi|206732978|gb|EDZ50152.1| alanine racemase [Bacillus cereus AH1134] Length = 391 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 71 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|228907821|ref|ZP_04071674.1| Alanine racemase [Bacillus thuringiensis IBL 200] gi|228851823|gb|EEM96624.1| Alanine racemase [Bacillus thuringiensis IBL 200] Length = 408 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNAFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G I ++++A GT Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGDEKIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|70733320|ref|YP_263094.1| alanine racemase [Pseudomonas fluorescens Pf-5] gi|123652058|sp|Q4K3T9|ALR_PSEF5 RecName: Full=Alanine racemase gi|68347619|gb|AAY95225.1| alanine racemase [Pseudomonas fluorescens Pf-5] Length = 357 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 167/369 (45%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ + R AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYQLARE-TSGVRALAVIKADAYGHGAVRCAQAL-EGEADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + + V+ S+ QL + Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEASELALIVEHDFWCVVHSLWQLEAIEQAAVA-KPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ + +++SH A AD+ +S Q+ F Sbjct: 119 VWLKLDSGMHRVGLHPKDYQVAYQRLQASGKVEKIVLMSHFARADELDCPRSSEQVAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240 G E SL +S ++ P+ RPGI LYG T + +Q V+T E+ Sbjct: 179 A-ARQGLGAEISLRNSPAVMGWPSVPSDWVRPGIMLYGSTPFEENNSVAARLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG + R I V A+GYADGYP G Sbjct: 238 KVICVRELPAGEPVGYGARFITDRPMRIGVVAMGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG+++MDM D+TD +G ++++G +I DVA A+ T Y L Sbjct: 287 LVAGQRSRLLGRVSMDMLCVDLTDVPQAGLGSTVELWGKNILASDVAQAADTIPYQLFCN 346 Query: 361 IGTRYAKFY 369 + R Y Sbjct: 347 L-RRVPLVY 354 >gi|228965092|ref|ZP_04126189.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001] gi|228794636|gb|EEM42145.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001] Length = 408 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ + + + +S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTARELGIQIPYIHSSNSAGSIELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|225016669|ref|ZP_03705861.1| hypothetical protein CLOSTMETH_00578 [Clostridium methylpentosum DSM 5476] gi|224950633|gb|EEG31842.1| hypothetical protein CLOSTMETH_00578 [Clostridium methylpentosum DSM 5476] Length = 388 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 99/387 (25%), Positives = 164/387 (42%), Gaps = 30/387 (7%) Query: 1 MHS-NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 MHS +I+L L +N+ + G R A VK +AYG G + +A L G Q Sbjct: 1 MHSYTRRTWAEINLDNLAHNYRHITRQLGTTRVIATVKADAYGHGEQHVASTLEKLGAQW 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSC 118 F V++++E + LR + + I +L K + + + S S S Sbjct: 61 FSVSNIDEAMALRRHGIRGDILILGFTPLEDAKELAEHQLTQTIFSHEYARELSSWAQSH 120 Query: 119 GVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-- 173 V+ P +++DTG R+G + L+ + ++ +++ SHL+ AD Sbjct: 121 QVTLPVHIKIDTGMTRIGFLCNGYENDLEGVRSLYSLPGLRITGTFSHLSHADSTDPDAI 180 Query: 174 -VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 Q F +S K + L +S+G++ + L RPGISLYG Sbjct: 181 AFTQAQARHFDEAVSALKQLGCDPGLTHLQNSAGVICLSGGKYDLARPGISLYGLNPSAE 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ V+ ++ I ++++ G V YG + + IA +GYADGY LS Sbjct: 241 VTDKELRPVLQLKSVISMVKQVGNGIPVGYGRSYVTSAPTRIATVPVGYADGYSRLLSN- 299 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 G + G PI+G + MD M D+T GD + + G D + Sbjct: 300 ----------KGSVLVGGKRAPIIGNVCMDQMMIDVTGI-DAAPGDEVTLIGTDGNLSVS 348 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A GT +Y+++ I R + Y Sbjct: 349 ADDLADLIGTISYEIVCMISKRVPRVY 375 >gi|254238354|ref|ZP_04931677.1| biosynthetic alanine racemase [Pseudomonas aeruginosa C3719] gi|126170285|gb|EAZ55796.1| biosynthetic alanine racemase [Pseudomonas aeruginosa C3719] Length = 358 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRHYS 357 >gi|239996484|ref|ZP_04717008.1| alanine racemase [Alteromonas macleodii ATCC 27126] Length = 358 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 18/368 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I AL +N+ ++ AL+ ++++ AVVK +AYG G +A L + F V Sbjct: 2 SRQTQAIIHADALLHNFKALAALAPSSQSMAVVKADAYGHGAVNVARILQHVS-SRFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE + LR A I VL G + ++ F N I V+ QLT+ H Sbjct: 61 IIEEAIALRDAGISAPIVVLEGAHQAKECQMAFQHNCILVMHCEEQLTWLESCPEQQRPH 120 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG +L + T + L + ++I +H ACADD ++ + Q++ F Sbjct: 121 -IWLKVDSGMHRLGFALSDIEGITAKYNHL-LSEQTVIATHFACADDVDNNFTNTQIDAF 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEA 240 ++ + S+A+S + P R G+ +YG + N + +T + Sbjct: 179 NQ-VASKLDLPTSVANSPATVNWPASRNAWNRLGVGVYGGAVSTSQNLDIEIYPAMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++ +R AGE + YG ++ S IA IGYADGYP G Sbjct: 238 SVLAVRTIPAGEGIGYGQTWVASKPSKIATVGIGYADGYPRHCKN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I+G ++G+++MDM D+T ++ VGD ++++G ++ + +VA + T +Y+L+ R Sbjct: 287 LIRGKRAYLVGRVSMDMITIDVTHIDNVAVGDEVELWGQNVPIQEVAANADTIDYELMTR 346 Query: 361 IGTRYAKF 368 + R + Sbjct: 347 VSQRVPRI 354 >gi|220930291|ref|YP_002507200.1| alanine racemase [Clostridium cellulolyticum H10] gi|220000619|gb|ACL77220.1| alanine racemase [Clostridium cellulolyticum H10] Length = 389 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 165/379 (43%), Gaps = 27/379 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I L + +N + ++G NA VVK +AYG G ++A L G F V+ Sbjct: 6 NRAWAEISLDNIAHNIREIRKITGKNAEIMGVVKADAYGHGVMEVAKTLLENGASRFAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++E ++LR + I +L P + I + ++ + S S G Sbjct: 66 MLDEAIQLRRAGIEVPILILGYTDPIRANEIIENDVTQSVFSHDLAQALSDEAVRQGKKV 125 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG +R+G A+ + + + +H A AD+ + Q ER Sbjct: 126 KIHIKIDTGMSRIGFLPGYSAVKNVVDISTLPNIIIEGLFTHFATADEKNRDYTYTQFER 185 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQ 233 F ++ + I + +S+ ++ P H + RPGI LYG ++ Sbjct: 186 FMSICCELQRIGIHIPVKHCANSAAVIEYPEMHLDMVRPGIILYGMYPSSEVDKSKIDLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T +A +I++++ +SYG R S IA IGYADG+ LS Sbjct: 246 PAMTLKANVIMVKEVEKNTSISYGRIFTTNRTSKIATIPIGYADGFTRMLSN-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDVAL 348 GK I G + P++G+I MD M D+T +EVGD + + G I ++DVA Sbjct: 298 ---KGKVLIHGELAPVVGRICMDQCMVDVTHIGSKVEVGDEVVLIGSQGQNNIMVEDVAQ 354 Query: 349 ASGTTNYDLLVRIGTRYAK 367 G NY+L+ +G R + Sbjct: 355 TIGMINYELVCIVGKRIPR 373 >gi|262275138|ref|ZP_06052949.1| alanine racemase biosynthetic [Grimontia hollisae CIP 101886] gi|262221701|gb|EEY73015.1| alanine racemase biosynthetic [Grimontia hollisae CIP 101886] Length = 358 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 168/367 (45%), Gaps = 17/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 I + AL +N + A++ N+RT A +K N YG G +A AL F V +E Sbjct: 4 ATAVIHMAALNHNIEIIRAMAPNSRTWAAIKANGYGHGLLPVAKALSTQ-TDGFGVARLE 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E V LR + I +L G + + + + + + + L Sbjct: 63 EAVSLRKGGIENPILLLEGFFSWADLPALEAHNLQTAVHCIEQLEALEKATLRQPLHVWL 122 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + +F + + + + +SH CAD+ V Q+ F L Sbjct: 123 KIDTGMHRLGVRPEHVSEFIERLNASPNVAKPLNFMSHFGCADELDKPVTPQQIALFNEL 182 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARI 242 G + SLA+SSG L+ P+ HF RPGISLYG + + ++ +T + + Sbjct: 183 TVSQPGYK-SLAASSGSLMWPDSHFDFVRPGISLYGISPVAARCGQDFGLKPAMTMTSSL 241 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ GE V Y G+ RD+ + V AIGY DGYP G + Sbjct: 242 IAVREVKKGEAVGYSGRWVAERDTQLGVVAIGYGDGYPR-----------VAPDGTPVLV 290 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VP+ G+++MDM D+ + VGD + ++G + ++++A GT Y+L+ + Sbjct: 291 NGRRVPLAGRVSMDMITVDLGPDSTDSVGDEVIMWGEGLPVEEIARHVGTIGYELVTNLT 350 Query: 363 TRYAKFY 369 +R Y Sbjct: 351 SRVHIVY 357 >gi|254415385|ref|ZP_05029146.1| alanine racemase [Microcoleus chthonoplastes PCC 7420] gi|196177860|gb|EDX72863.1| alanine racemase [Microcoleus chthonoplastes PCC 7420] Length = 391 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 113/378 (29%), Positives = 175/378 (46%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E ++ID AL +N + + L S + AVVK +AYG G +A G V Sbjct: 23 ERAWVEIDRAALAHNLNQLKQLLSAKTQLMAVVKADAYGHGATMVAQTALATGAYGLCVA 82 Query: 64 SVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 +VEEG++LR A I +L P Q + I L P I + Q +S + C Sbjct: 83 TVEEGIQLREAGIDAPIVILGATNTPEQVRAIAHWYLQPTICTPQQALVFSDTLSRCQTP 142 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +DTG +RLG+S Q+A +F +L+ + SHLA AD P V +Q +R Sbjct: 143 LSVHLNIDTGMSRLGMSWQQATEFVQLVQRLPHLKLASVYSHLATADSPDPTVMRLQHQR 202 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQT 234 F I+ LA+S+ L P H+ R G++LYG ++ ++ Sbjct: 203 FEAAIAQLHAANIVPPCLHLANSAATLTDPALHYDWVRVGLALYGLYPAPHLHPKVNLKP 262 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ + R+ ++ AG VSYG + + +AV IGYADG P LS + Sbjct: 263 VMQVKTRVTQVKTIPAGTGVSYGYTFRTQKQLRLAVVGIGYADGVPRNLSNKMT------ 316 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I+G V +G ITMD M D+++ ++VG+ + + G D I DD A++ Sbjct: 317 -----GLIRGQRVSQIGAITMDQLMLDVSNIPDLQVGEIVTLIGRDGDRQISADDWAISL 371 Query: 351 GTTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 372 NTISWEILCGFKHRLPRV 389 >gi|20141177|sp|P54918|ALR_SYNY3 RecName: Full=Alanine racemase Length = 372 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 169/382 (44%), Gaps = 26/382 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++ID AL +N AVVK +AYG G ++A AG Sbjct: 1 MIRQR-AWVEIDQAALVHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQTALQAGADW 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL-MS 117 + ++ EG++LR A I +L GI+ P + + I L P + S Q ++ + + Sbjct: 60 LAIATLGEGIELREAGITAPILLLGGINSPEEIEAIAHWRLQPTLCSPEQAQLFNDILLK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G P L++DTG RLG +A +F + +L+ + SHLA ADDP++ Sbjct: 120 LGKVLPVHLKLDTGMTRLGTPWPQAANFVGLVQSLPQLRLASLYSHLATADDPNTATMLQ 179 Query: 178 QLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH 230 Q ERF I + + LA+S+ L G +H+ + R G+ LYG + Sbjct: 180 QQERFAKAIASLRQARLPIPKLHLANSAATLHGQAWHYDMVRVGLGLYGLYPAPHLGDCL 239 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V+T A+I IR G VSYG Q +AV IGYADG P LS Sbjct: 240 DLKPVLTVRAKITQIRTIPPGTGVSYGHQFVSEETMPMAVVGIGYADGVPRNLSNQL--- 296 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + ++G V +G ITMD M D+ +VG+ + + G D I D Sbjct: 297 --------EVLLRGQPVRQIGAITMDQMMVDLRGIDDPQVGEVVTLIGQDGDRQITADHW 348 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A GT ++++L R + Sbjct: 349 ASTLGTISWEILCGFKHRLPRI 370 >gi|89075968|ref|ZP_01162340.1| alanine racemase [Photobacterium sp. SKA34] gi|89048317|gb|EAR53896.1| alanine racemase [Photobacterium sp. SKA34] Length = 359 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 116/371 (31%), Positives = 179/371 (48%), Gaps = 22/371 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL +N + + N++ AVVK NAYG G ++A L N V + V +E Sbjct: 4 ATAHIDTEALAHNLGLIRQHAPNSKVLAVVKANAYGHGLLRVAQTLSN--VDAYGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G + P ++ N+ V+ S+ QL + Sbjct: 62 EALILRAGGIVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQTELDN-PVQVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG +RLG+ ++ DF + + + + ISH ADD SS + QL+ F Sbjct: 121 VKIDTGMHRLGVRPEDLTDFMVRLNACENVAKPLRFISHFGNADDLSSDITLKQLDTFLD 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQTVVTAE 239 L Y+G E SLA+S+GIL P+ + RPGI +YG + S+ ++ V+T Sbjct: 181 LTQDYQG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFNESVRFAASYDLKPVMTLT 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +R GE V YGG RD+ + V AIGY DGYP T G Sbjct: 240 SSLIAVRDVKQGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +VP+ G+++MDM D+ +VGD ++G + + VA GT Y+L+ Sbjct: 289 VLVNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTATLWGEGLPAEVVAEHIGTIAYELVT 348 Query: 360 RIGTRYAKFYT 370 ++ R A YT Sbjct: 349 KLTPRVAMAYT 359 >gi|114567397|ref|YP_754551.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338332|gb|ABI69180.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 377 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 161/380 (42%), Gaps = 24/380 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + +IDLTA+K+N + A A+VK +AYG G +++ A GV+ Sbjct: 1 MDNRRPTWAEIDLTAIKHNILMIRNKVSPAIIMAIVKADAYGHGMLEVSRACLQEGVEWL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V S++E + LR ++ + VL I + + ++ + S+ S+ Sbjct: 61 GVASLDEAIHLREAGIKSPVLVLGFIPEEFAEATVEYDISASVFSLSFARALSQAASRLS 120 Query: 120 VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + +++D+G RLG + +L ++ I +H A AD Q Sbjct: 121 RTARVHIKIDSGMGRLGFAPIPSSLALVQEIAALPGIEVEGIFTHFADADAEDKSFTYEQ 180 Query: 179 LERFRTLISHYKG----IEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKS---H 230 L F +S + I S+S +L P + R GI LYG + Sbjct: 181 LRIFSNFVSDLEKGGLSIPLKHCSNSAAILDIPEARLNMVRAGIVLYGLYPSEDMKRLGL 240 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + +T ++RI ++ G +SYG + + +A IGYADGY LS + Sbjct: 241 DIIPAMTLKSRISFLKVLEPGHYISYGRTFCCQQATRVATVPIGYADGYHRLLSNRST-- 298 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDDVA 347 I+G VP +G + MD MFD++ ++ GD + +FG + DD+A Sbjct: 299 ---------AVIRGEKVPSIGMVCMDQCMFDVSGLERVKEGDEVILFGKPSDGVTADDLA 349 Query: 348 LASGTTNYDLLVRIGTRYAK 367 GT NY+++ + R + Sbjct: 350 RILGTINYEIVCAVSARVPR 369 >gi|228952487|ref|ZP_04114567.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069638|ref|ZP_04202925.1| Alanine racemase [Bacillus cereus F65185] gi|229150330|ref|ZP_04278548.1| Alanine racemase [Bacillus cereus m1550] gi|229178496|ref|ZP_04305862.1| Alanine racemase [Bacillus cereus 172560W] gi|228605004|gb|EEK62459.1| Alanine racemase [Bacillus cereus 172560W] gi|228633139|gb|EEK89750.1| Alanine racemase [Bacillus cereus m1550] gi|228713478|gb|EEL65366.1| Alanine racemase [Bacillus cereus F65185] gi|228807182|gb|EEM53721.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 408 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|302872340|ref|YP_003840976.1| alanine racemase [Caldicellulosiruptor obsidiansis OB47] gi|302575199|gb|ADL42990.1| alanine racemase [Caldicellulosiruptor obsidiansis OB47] Length = 390 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 160/380 (42%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +I+L L N ++ + AVVK +AYG G +I+ L GV V Sbjct: 8 NRVWAEINLDNLLYNLENIKKKILPQTKIMAVVKADAYGHGAVEISRVLVKNGVSMLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++E ++LR + I +L + + + + + + Q + SK G Sbjct: 68 IIDEALQLRHFNFDVPILILGFTPFELSEQVVENEISQTVYTYEQAYYLSKAAQKIGKKA 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLE 180 ++VDTG R+G +++++ N +L I SH + D S Q Sbjct: 128 KIHIKVDTGMGRIGFLCCEQSVNTILNIAKLPNIELEGIFSHFSSADDPDSDDFTHEQFI 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +F + +A+SS + P Y + R G+ LYG + + ++ Sbjct: 188 KFENFVKELNKNGVYFKYKHIANSSAAIRFPQYQLDVVRLGLILYGLYPNSSLKEHINLK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ +AR+I +++ G +SY + TR S IA IGYADG+ S Sbjct: 248 PVMSVKARVINVKEVPEGFPISYNRRYITTRKSKIATIPIGYADGFTRVGSSQR------ 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 IKG ++G I MD M D+TD +++GD + I G +I D +A Sbjct: 302 -----HVLIKGEFAKVVGSICMDQCMVDVTDIEDVKIGDEVVIIGKQGKNEILADHLAEQ 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + + Sbjct: 357 IGTINYEVVCSFSKRIPRVF 376 >gi|332711200|ref|ZP_08431133.1| alanine racemase [Lyngbya majuscula 3L] gi|332350014|gb|EGJ29621.1| alanine racemase [Lyngbya majuscula 3L] Length = 408 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 115/379 (30%), Positives = 177/379 (46%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +ID AL +N + L + AVVK +AYG G +A AG V Sbjct: 38 RQRAWAEIDQVALHHNLRQIQQLWRHPTQLMAVVKADAYGHGALTVARTAIEAGAGGLCV 97 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +V EG++LR +A I +L P Q K I L P + + Q +S+ +S Sbjct: 98 ATVSEGIQLRQGGIKATILLLGATNTPEQVKAIAHWQLEPTLCNPQQALVFSETLSGLNQ 157 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 S P L++DTG +RLG+ Q+A++F +++ + SHLA AD P V Q + Sbjct: 158 SLPVHLKLDTGMSRLGMPWQDAIEFVRLVQQLPNLEIASVYSHLATADSPDPTVMRQQHQ 217 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 RF+ I+ LA+S+ L H+ R G+++YG + K ++ Sbjct: 218 RFKNAIAQLQAGGITPPRLHLANSAATLTDSALHYDWVRVGLAVYGLYPAEHLQKVIHLK 277 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +ARI I+ G +SYG Q R +AV IGYADG P LS + Sbjct: 278 PVMQVKARITQIKTIPPGTGISYGHQFISNRQMRLAVVGIGYADGVPRNLSNRIN----- 332 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 I+G VP +G ITMD M D++D +I+VG+ + + G I DD A+A Sbjct: 333 ------VIIRGQQVPQIGAITMDQLMLDVSDIPNIQVGEIVTLIGQDGEEQISADDWAMA 386 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT +++++ R + Sbjct: 387 LGTISWEIICGFKHRLPRV 405 >gi|75763091|ref|ZP_00742872.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900692|ref|ZP_04064911.1| Alanine racemase [Bacillus thuringiensis IBL 4222] gi|74489425|gb|EAO52860.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858950|gb|EEN03391.1| Alanine racemase [Bacillus thuringiensis IBL 4222] Length = 408 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVNEFKKHVNDEKIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ + + + +S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTARELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTIVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GYALINGIRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|154253914|ref|YP_001414738.1| alanine racemase [Parvibaculum lavamentivorans DS-1] gi|154157864|gb|ABS65081.1| alanine racemase [Parvibaculum lavamentivorans DS-1] Length = 408 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 202/367 (55%), Gaps = 7/367 (1%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ N+ + A + A +AVVK NAYGLG +A L G + FFV EG Sbjct: 29 LTIDLDAVAANYDMLRAEAAGAEVSAVVKANAYGLGMGPVARRLAAEGCRSFFVAEANEG 88 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 LR P A I+VL G+ PG L+P ++S+ ++ + + G S AL Sbjct: 89 AALRALLPDAEIYVLNGLFPGTAGFYAAHGLVPCLASMAEVAEWR-EAAKGGSLKAALHF 147 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS- 187 DTG NRLG+S +A ++ LI+SHLACADD +S +N+ QL RFR L + Sbjct: 148 DTGMNRLGMSEADAAALAAEGALTAGIEVRLIMSHLACADDAASPMNARQLARFRGLRTI 207 Query: 188 ---HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G +ASLA+S GI LG +YHF L RPG+SLYGG+ + HP + VT EAR++ Sbjct: 208 LAGRFAGAKASLANSGGIYLGKDYHFDLVRPGVSLYGGSPFTGREHPFRPAVTVEARVLA 267 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ A E YG K + +AV A GYADGY LS GG+ I G Sbjct: 268 VREMAAEETAGYGATWKARGTARMAVLAAGYADGYMRALSSPRPNGDGGDDYGGQVRIAG 327 Query: 305 YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 Y P+ G+I+MDM + D++ ++ GD ++ GP I +DDV L +GT Y++L +G Sbjct: 328 YTAPVAGRISMDMLIVDVSGLPEGAVKRGDMAELIGPHITVDDVGLKAGTLGYEILTSLG 387 Query: 363 TRYAKFY 369 RY + Y Sbjct: 388 GRYMRIY 394 >gi|5690427|gb|AAD47082.1|AF165882_1 biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1] Length = 358 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRALLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRRYS 357 >gi|116053079|ref|YP_793398.1| biosynthetic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588300|gb|ABJ14315.1| biosynthetic alanine racemase [Pseudomonas aeruginosa UCBPP-PA14] Length = 358 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPVALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRRYS 357 >gi|118581006|ref|YP_902256.1| alanine racemase [Pelobacter propionicus DSM 2379] gi|118503716|gb|ABL00199.1| alanine racemase [Pelobacter propionicus DSM 2379] Length = 433 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 106/383 (27%), Positives = 176/383 (45%), Gaps = 28/383 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL+AL++N+ + + +S A AVVK +AYG G I+ L GV F V Sbjct: 60 SRPTFAEIDLSALRHNFQLIRSSVSPQAELLAVVKADAYGHGFMDISRELERLGVNAFGV 119 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 + E ++LR I +L G++PGQE+ N+ ++ ++ Q + + Sbjct: 120 AFLAEAIQLRKAGIDRPILLLGGVYPGQERKCIGYNISTIVFNLEQARALDRAAAKLFRK 179 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQ 178 L+VDTG RLG+ E F L ++SH A AD+ + + +Q Sbjct: 180 AQLHLKVDTGMGRLGIPYAEVPSFLRELAALPHISLEGVVSHFASADELNESGRYFSRLQ 239 Query: 179 LERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHP 231 ERF ++ + +A+S+ LL L RPGI+LYG + Sbjct: 240 AERFAWALAETRSAGFAPRYVHIANSAAGLLRDIPGCNLVRPGIALYGALPSPDFQGQLD 299 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ ++RI +++ G +SYG + +LIA +GYADGY L+ Sbjct: 300 LRPVMRLKSRIAMLKWVEPGTPISYGRRFTTGGRTLIASVPVGYADGYVRALTNR----- 354 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346 G+ ++G + G + MD M D+T + VGD + + GPD I +++ Sbjct: 355 ------GEALVRGERARVAGTVCMDWIMLDVTGVKGVSVGDPVVLMGPDDSGNCIHAEEL 408 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A A+GT Y++ I R + Y Sbjct: 409 AEAAGTIPYEIFCGISKRVPRVY 431 >gi|49086668|gb|AAT51370.1| PA4930 [synthetic construct] Length = 359 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + + + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRAILAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRRYS 357 >gi|15600123|ref|NP_253617.1| biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1] gi|20137487|sp|Q9HUN4|ALR1_PSEAE RecName: Full=Alanine racemase, biosynthetic gi|9951209|gb|AAG08315.1|AE004906_3 biosynthetic alanine racemase [Pseudomonas aeruginosa PAO1] Length = 358 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 16/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + + + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRAILAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 349 TARVPRRYS 357 >gi|119943978|ref|YP_941658.1| alanine racemase [Psychromonas ingrahamii 37] gi|119862582|gb|ABM02059.1| alanine racemase [Psychromonas ingrahamii 37] Length = 358 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 168/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +R I+L AL++N+ + + ++ AV+K NAYG G K+A L + V F V + Sbjct: 4 IRAVINLKALQHNFQVLQKTAPQSQIIAVIKANAYGHGMVKVAQKLQH--VHAFAVARLS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR + I +L G + + + + L Sbjct: 62 EALILRSAGIKHPIILLGGFFKDGDLATLSAADLQCVVHSQEQVAAIMQAKLPNPLKIWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + + ++H A++ +++ + QL F+ Sbjct: 122 KLDTGMHRLGFHPEQFDAVYKRLEGSINVQKPINFLTHFHSAEEVNNNATAQQLSLFKQY 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242 I G++ SLA+S+ + P HF RPGI+LYG + + K ++ V+T ++ + Sbjct: 182 IQAGSGLK-SLANSAAVFAWPETHFDAVRPGIALYGISPFADRLAKDLQLRPVMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I IR A E V YG D+ + V A+GY DGYP G + Sbjct: 241 IAIRDHKARESVGYGAHWTAQNDTQLGVVAMGYGDGYPRLA-----------PEGTPVLV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +VPI+G+I+MDM D+ +VGD + ++G + + VA GT Y+L+ ++ Sbjct: 290 NGRIVPIVGRISMDMLTIDLGLMNQDKVGDDVTLWGEGLPAEIVAQKIGTIAYELVTKLT 349 Query: 363 TRYAKFY 369 +R Y Sbjct: 350 SRVTLHY 356 >gi|325499632|gb|EGC97491.1| alanine racemase [Escherichia fergusonii ECD227] Length = 359 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 167/364 (45%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +EE ++ Sbjct: 8 INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPD--ADAFGVARLEEALR 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + + + +++DT Sbjct: 66 LRAGGITQPILLLEGFFEADDLPTISAEHLQTAVHNEEQLVALETAELKEPVTVWMKLDT 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++A F S K + Q I+SH A AD+P S QL+ F T Sbjct: 126 GMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDIFNTFCEGK 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILI 245 G + S+A+S GILL P HF RPGI LYG + Q V++ + +I + Sbjct: 186 PG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFGCQPVMSLTSSLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AGE V YGG RD+ + V A+GY DGYP G + G Sbjct: 245 REHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ +R Sbjct: 294 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAAMTKVSAYELITRLTSRV 353 Query: 366 AKFY 369 A Y Sbjct: 354 AMKY 357 >gi|297159652|gb|ADI09364.1| alanine racemase [Streptomyces bingchenggensis BCW-1] Length = 384 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 159/387 (41%), Gaps = 30/387 (7%) Query: 1 MHSNEF-LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ R +DL AL+ N ++ A + A AVVK +AYG G A A AG Sbjct: 1 MNETPMRARAVVDLAALRANVRALRAAAPGAELMAVVKSDAYGHGAVPCARAAREAGASW 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSC 118 + EE + LR R+ G + + ++ +S++ + C Sbjct: 61 LGTATPEEALALRAAGDTGRLLCWLWTPGGPWREAIEADVDVSLSAMWALREAVAAAREC 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVN 175 G + L+ DTG R G + + + + + SH ACAD+P Sbjct: 121 GRTARVQLKADTGLGRNGCPPADWPELVAAARAAEAEGTVTVTGLWSHFACADEPGHPSI 180 Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 + QL+ FRTL++ + +A+S L P HF L R GI++YG + H Sbjct: 181 AAQLKVFRTLLAQAEQAGLRPEVRHIANSPATLTLPESHFDLVRTGIAVYGISPSPEVGH 240 Query: 231 PMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 P V+T A + +++ G VSYG + + +A+ +GYADG P SG Sbjct: 241 PGDFGLRPVMTLVASLASVKRVPGGHGVSYGHRYITPGPTTLALVPVGYADGVPRHASGT 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIK 342 G + G + G + MD + D+ GD +FGP + Sbjct: 301 -----------GPVLVAGKWRTVAGTVAMDQFVVDLGGDA-AAPGDEAVLFGPGDRGEPT 348 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +D A A G+ Y+++ RI R + Y Sbjct: 349 AEDWARAVGSIAYEIVTRISARVPRVY 375 >gi|30020200|ref|NP_831831.1| alanine racemase [Bacillus cereus ATCC 14579] gi|228962874|ref|ZP_04124117.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229079274|ref|ZP_04211819.1| Alanine racemase [Bacillus cereus Rock4-2] gi|229109560|ref|ZP_04239150.1| Alanine racemase [Bacillus cereus Rock1-15] gi|229127502|ref|ZP_04256494.1| Alanine racemase [Bacillus cereus BDRD-Cer4] gi|229144707|ref|ZP_04273107.1| Alanine racemase [Bacillus cereus BDRD-ST24] gi|29895750|gb|AAP09032.1| Alanine racemase [Bacillus cereus ATCC 14579] gi|228638759|gb|EEK95189.1| Alanine racemase [Bacillus cereus BDRD-ST24] gi|228655959|gb|EEL11805.1| Alanine racemase [Bacillus cereus BDRD-Cer4] gi|228673896|gb|EEL29150.1| Alanine racemase [Bacillus cereus Rock1-15] gi|228704024|gb|EEL56465.1| Alanine racemase [Bacillus cereus Rock4-2] gi|228796804|gb|EEM44171.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 408 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|295838450|ref|ZP_06825383.1| alanine racemase [Streptomyces sp. SPB74] gi|197695751|gb|EDY42684.1| alanine racemase [Streptomyces sp. SPB74] Length = 378 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 152/379 (40%), Gaps = 29/379 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +IDL AL+ N + + A AVVK +AYG G A A AG V + Sbjct: 8 PRAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPA 67 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E + LR + R+ G + + ++ +S L + G + Sbjct: 68 EALALRAEGVEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAVAAREAGRTARVH 127 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERF 182 L+ DTG R G + N+ + Q+ + SH ACAD+P + QL F Sbjct: 128 LKADTGLGRNGCQPADWSALLGNALALQAEGAVQVVGLWSHFACADEPGHPSIAAQLALF 187 Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQ 233 + + + +A+S L P H+ L RPGI++YG + ++ Sbjct: 188 EEMTALAARLGVRAEARHIANSPATLGLPESHYDLVRPGIAMYGLSPSPAMGTHGDFGLR 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ A + L+++ G VSYG ++ + + +GY DG P SG Sbjct: 248 PVMRLLAPLALVKQVPGGHGVSYGHHYVTPGETTLGLVPLGYGDGIPRHASGT------- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G + G + G+I MD + D+ G +FGP + +D A A Sbjct: 301 ----GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPA-PGSEAVLFGPGDRGEPSAEDWARA 355 Query: 350 SGTTNYDLLVRIGTRYAKF 368 + T Y+++ RIG R + Sbjct: 356 ADTIVYEIVTRIGARVPRV 374 >gi|228920796|ref|ZP_04084136.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229190195|ref|ZP_04317198.1| Alanine racemase [Bacillus cereus ATCC 10876] gi|228593312|gb|EEK51128.1| Alanine racemase [Bacillus cereus ATCC 10876] gi|228838907|gb|EEM84208.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 408 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 167/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL A+K+N + + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEIDLNAVKHNVKEFKKHVNDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + + +++ + V L +++ + Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLHGINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|113461082|ref|YP_719150.1| alanine racemase [Haemophilus somnus 129PT] gi|112823125|gb|ABI25214.1| alanine racemase [Haemophilus somnus 129PT] Length = 359 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 104/362 (28%), Positives = 171/362 (47%), Gaps = 15/362 (4%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +I ALK+N + + N++ A+VK NAYG G E ++ L++ V F V + Sbjct: 5 PPTARISSVALKHNIQVIKQKAKNSKVIAIVKANAYGHGLEFVSSTLHHL-VDCFGVARL 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E ++L I +L G + I N I + + + K Sbjct: 64 SEALRLCAEGITKPILLLEGFFSEDDLPIIAVNNIQTVIHNQEQLYELKKAKLPNKIKVW 123 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L++DTG +RLG+ L++ DF + +SH + AD+ +QLERF + Sbjct: 124 LKIDTGMHRLGVDLEQVEDFYQQLVQCSNVKEIGFLSHFSRADELMCGYTEIQLERFLQV 183 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARII 243 +G E S+ +SSGIL + RPGI +YG + + + + V+T + +I Sbjct: 184 TEGKQG-ERSIVASSGILFWQQAYLDWIRPGIIMYGISPNNTPAEVYGLIPVMTLTSSLI 242 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 IR GE V YGG RD+ I V AIGY DGYP + G +I Sbjct: 243 TIRNHKKGEPVGYGGSWISERDTKIGVVAIGYGDGYPRDM-----------PQGTPVYIN 291 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G VPI+G+++MDM D+ +VGD + ++G ++ +++++ SG +Y+L+ ++ Sbjct: 292 GRKVPIVGRVSMDMLTVDLGIESQDKVGDEVILWGKELPIEEISAISGMISYELITKLTP 351 Query: 364 RY 365 R Sbjct: 352 RV 353 >gi|49481282|ref|YP_036225.1| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332838|gb|AAT63484.1| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 391 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEITCMLDRRIPRVY 375 >gi|253682108|ref|ZP_04862905.1| alanine racemase [Clostridium botulinum D str. 1873] gi|253561820|gb|EES91272.1| alanine racemase [Clostridium botulinum D str. 1873] Length = 387 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 102/385 (26%), Positives = 167/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +I+L L +N + +S + + +VK +AYG G +AP L G Sbjct: 1 MFKHLRPVWAEINLDNLASNMKEIKKISSSKKIIGIVKADAYGHGALDVAPTLIENGATG 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V + EGV+LR + I VL P + ++ + S+ S++ Sbjct: 61 LAVAVINEGVELRRSGIECPIMVLGFTAPTLIDTLLRHDIEQTVFSLEYAKQLSEVAEKM 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G E++ ++ I +H + AD+ + Sbjct: 121 HKKIKIHIAVDTGMGRIGFLPNKESVQDVKKISKLPNVEIKGIFTHFSTADESNKEYTYY 180 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--- 229 QL++F K +A+S+ I+ F+ RPGI LYG Sbjct: 181 QLKKFNEFYDELKKENVNIETRHIANSAAIMELSETQFEGVRPGIILYGYYPSDEVDKSK 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ + I+ I+K +G+ +SYG + K R+S+IA +GYADGY L Sbjct: 241 LKLKPVMELKTNIVHIKKISSGQYISYGRKFKTERESIIATLPVGYADGYTRLLFN---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD----IKLD 344 K I G PI+G+I MD M DITD +++GD + + G + I D Sbjct: 297 -------KAKVIINGQFAPIIGRICMDQCMVDITDIKGDVKLGDEVILMGQENGIKIDAD 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A GT NY+++ I R + Y Sbjct: 350 DIASMLGTINYEVVCMISKRVPRVY 374 >gi|311693521|gb|ADP96394.1| alanine racemase [marine bacterium HP15] Length = 358 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 169/372 (45%), Gaps = 23/372 (6%) Query: 6 FLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 R +IDL AL+ N+ + +G AR AVVK + YG G +A AL ++ + V Sbjct: 1 MPRSTIARIDLDALRRNFQTAQRRAGGARVMAVVKADGYGHGIGPVASAL-DSLAPKYAV 59 Query: 63 TSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 +EE +R Q+ + + + PV S QL + +L + Sbjct: 60 ACLEEARAIRETGLIQSVVLLQGVHAEADIDECARSGFEPVFHSFQQLAWLERLDTWP-- 117 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLE 180 + L+V++G NRLG E ++H ACADDP S + + Q Sbjct: 118 -AFWLKVNSGMNRLGFHPDELAGVMSRLQAMSADTELLGFVTHFACADDPDSAMTAQQTA 176 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237 F S + + S+A+S+ F +RPGI LYGG+ + ++ V++ Sbjct: 177 VFEKATSSFPDLMKSVANSAAHFRPGQPMFDWSRPGIMLYGGSPMVGTTGPELGLEPVMS 236 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 EA +I R AGE V YG RD+ + + AIGY DGYP Sbjct: 237 LEAPLISTRMVPAGESVGYGASWVADRDTRMGMVAIGYGDGYPRHAG-----------TN 285 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 I G + ++G+++MDM D+T++ + GD ++++G + +D+VA +GT +Y+L Sbjct: 286 TPAAINGQRIRLIGRVSMDMLAVDLTNAPDAKEGDSVELWGRTVGVDEVAACAGTISYEL 345 Query: 358 LVRIGTRYAKFY 369 + I R + Y Sbjct: 346 MTGITGRVPRQY 357 >gi|325929301|ref|ZP_08190432.1| alanine racemase [Xanthomonas perforans 91-118] gi|325929312|ref|ZP_08190443.1| alanine racemase [Xanthomonas perforans 91-118] gi|325540323|gb|EGD11934.1| alanine racemase [Xanthomonas perforans 91-118] gi|325540334|gb|EGD11945.1| alanine racemase [Xanthomonas perforans 91-118] Length = 365 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 165/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLARRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 ADGQICPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSALAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRIY 354 >gi|218551364|ref|YP_002385156.1| alanine racemase [Escherichia fergusonii ATCC 35469] gi|218358906|emb|CAQ91565.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia fergusonii ATCC 35469] gi|324112309|gb|EGC06287.1| alanine racemase [Escherichia fergusonii B253] Length = 359 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 167/364 (45%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +EE ++ Sbjct: 8 INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPD--ADAFGVARLEEALR 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + + + +++DT Sbjct: 66 LRAGGITQPILLLEGFFEADDLPTISAEHLQTAVHNEEQLVALETAELKEPVIVWMKLDT 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++A F S K + Q I+SH A AD+P S QL+ F T Sbjct: 126 GMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDIFNTFCEGK 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILI 245 G + S+A+S GILL P HF RPGI LYG + Q V++ + +I + Sbjct: 186 PG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFGCQPVMSLTSSLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AGE V YGG RD+ + V A+GY DGYP G + G Sbjct: 245 REHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ +R Sbjct: 294 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAAMTKVSAYELITRLTSRV 353 Query: 366 AKFY 369 A Y Sbjct: 354 AMKY 357 >gi|163797505|ref|ZP_02191456.1| alanine racemase [alpha proteobacterium BAL199] gi|159177254|gb|EDP61813.1| alanine racemase [alpha proteobacterium BAL199] Length = 381 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 196/368 (53%), Gaps = 15/368 (4%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL IDL A++ N+ + G A VVK + YGLG ++APAL G + FFV ++ Sbjct: 12 LSRLTIDLGAVRRNYRRLVKELGGVPCAGVVKADGYGLGAARVAPALSAEGCRIFFVATL 71 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPY 124 +E V+LR P A + L G+ G E + ++PV++++ Q+T + G S P Sbjct: 72 DEAVRLRPVLPDATVCCLNGLLAGTEDVFVAHRIVPVLNALDQITRWQTHGGRLGRSLPA 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L VDTG NRLGL E +ISHLA AD+P + N++QL RF+ Sbjct: 132 ILHVDTGMNRLGLGDDEWDRVLGTPGVLDGVDWQYLISHLAVADEPDNPANALQLARFQR 191 Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + G++ASLA+SSGI LG YHF L RPG++LYGG +P++ + E R++ Sbjct: 192 VRQRMPNGMKASLANSSGIFLGTPYHFDLGRPGVALYGGRPSSIGPNPLECPIRLEGRVL 251 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R AG+ V YG R S IA A GYADGY +LSG G + Sbjct: 252 QVRDVPAGDSVGYGNSWTAGRRSRIATVAAGYADGYLRSLSG-----------AGTVALG 300 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 P++G+++MD+ D+TD E+ G ++++ GP I D A A+GT Y+LL + Sbjct: 301 ARTCPVVGRVSMDLITVDVTDVPPAEIAPGTFVEVLGPTITPDAAADAAGTIGYELLTAL 360 Query: 362 GTRYAKFY 369 G RY + Y Sbjct: 361 GRRYVRHY 368 >gi|26250840|ref|NP_756880.1| alanine racemase [Escherichia coli CFT073] gi|110644389|ref|YP_672119.1| alanine racemase [Escherichia coli 536] gi|191171958|ref|ZP_03033503.1| alanine racemase [Escherichia coli F11] gi|227886936|ref|ZP_04004741.1| alanine racemase [Escherichia coli 83972] gi|300980476|ref|ZP_07175023.1| alanine racemase [Escherichia coli MS 200-1] gi|300992970|ref|ZP_07180125.1| alanine racemase [Escherichia coli MS 45-1] gi|301047007|ref|ZP_07194116.1| alanine racemase [Escherichia coli MS 185-1] gi|33301027|sp|Q8FB20|ALR1_ECOL6 RecName: Full=Alanine racemase, biosynthetic gi|26111271|gb|AAN83454.1|AE016770_254 Alanine racemase, biosynthetic [Escherichia coli CFT073] gi|110345981|gb|ABG72218.1| alanine racemase, biosynthetic [Escherichia coli 536] gi|190907723|gb|EDV67317.1| alanine racemase [Escherichia coli F11] gi|227836077|gb|EEJ46543.1| alanine racemase [Escherichia coli 83972] gi|300301052|gb|EFJ57437.1| alanine racemase [Escherichia coli MS 185-1] gi|300307778|gb|EFJ62298.1| alanine racemase [Escherichia coli MS 200-1] gi|300406744|gb|EFJ90282.1| alanine racemase [Escherichia coli MS 45-1] gi|307556202|gb|ADN48977.1| alanine racemase [Escherichia coli ABU 83972] gi|315291550|gb|EFU50910.1| alanine racemase [Escherichia coli MS 153-1] gi|324014852|gb|EGB84071.1| alanine racemase [Escherichia coli MS 60-1] Length = 359 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 167/364 (45%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +EE ++ Sbjct: 8 INRRALRHNLQRLRELAPASKLVAVVKANAYGHGLIETARTLPD--ADAFGVARLEEALR 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + + + +++DT Sbjct: 66 LRAGGITRPILLLEGFFEADDLPTISAEHLHTAVHNEEQLVALENAELKEPVTVWMKLDT 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++A F S K + Q I+SH A AD+P S QL+ F T Sbjct: 126 GMHRLGVLPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPQSGATEKQLDIFNTFCEGK 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILI 245 G + S+A+S GILL P HF RPGI LYG + Q V++ + +I + Sbjct: 186 PG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEDGTTGADFGCQPVMSLTSSLIAV 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AGE V YGG RD+ + V A+GY DGYP G + G Sbjct: 245 REHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGR 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ +R Sbjct: 294 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLTSRV 353 Query: 366 AKFY 369 A Y Sbjct: 354 AMKY 357 >gi|92117813|ref|YP_577542.1| alanine racemase [Nitrobacter hamburgensis X14] gi|91800707|gb|ABE63082.1| alanine racemase [Nitrobacter hamburgensis X14] Length = 398 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 182/365 (49%), Gaps = 11/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + + A A VVK +AYG G + AL AG + FFV +++E Sbjct: 34 LTVDLDAIVANWRKLEKTAVPAECAGVVKADAYGCGARPVVRALSAAGCRTFFVATLDEA 93 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 R P A I+VL GI N PVI + +L + G + A+ Sbjct: 94 RVARAAAPSADIYVLDGIFQNCADAFAAINCRPVIGDLNELAEWDVFCRRTGWAGGAAIH 153 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG +L EA + ++L++SHLACA+ + +N+ Q+ FR + Sbjct: 154 IDTGMNRLGFTLDEAQAIL-PRIDAGDHGITLVMSHLACAETLNHPLNARQVAAFREIAR 212 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASLA+SSGI LGP Y F L RPG++LYG +PMQ VV +ARI+ R Sbjct: 213 LFSGVPASLANSSGIFLGPQYQFDLVRPGVALYGVNPTPEADNPMQPVVELKARIVQTRT 272 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R + +A+ A GYADGY D G + G Sbjct: 273 IDKGESVGYGATWTARRTTRLAIVATGYADGYFRAGGSNDGTR------GADVVVAGTRC 326 Query: 308 PILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P+ G+I+MD+ DITD + G + G I +D++A GT Y++L +G R Sbjct: 327 PVAGRISMDLLAIDITDLPPNAGVRRGHLATLIGDGITVDELAHHFGTIGYEVLTSLGGR 386 Query: 365 YAKFY 369 Y + Y Sbjct: 387 YRRIY 391 >gi|320529492|ref|ZP_08030578.1| alanine racemase [Selenomonas artemidis F0399] gi|320138286|gb|EFW30182.1| alanine racemase [Selenomonas artemidis F0399] Length = 368 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 162/376 (43%), Gaps = 22/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++I+L A+ +N+ + +A+ AVVK +AYG G +A AG + + Sbjct: 3 SRAAWVEINLGAIAHNYGEIRKHIQKDAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAL 62 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++ E +KLR + +L I D ++ + + S C + Sbjct: 63 ATISEALKLREAGFTTPLLILGLTKAENSFDIVDADITQTVCRLDLAEALSAEAVCQNKT 122 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G+ ++A + +L + SH A AD Q+ Sbjct: 123 VKVHLAVDTGLGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTADKSFAMQQVRL 182 Query: 182 FRTLIS--HYKGIEASLAS---SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QT 234 F + GI + S+ IL P+ HF + R GI YG + P+ + Sbjct: 183 FAEACDAIEHAGIHIPIRHIAESAAILDLPDVHFDMVRAGIIQYGIWPSSEVTRPITLRP 242 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ARI+ I+ G+ V YG R++ IA ++GYADG+ Sbjct: 243 AMKFCARIVYIKTIAPGDSVGYGRAFIAPRETRIATISVGYADGFLRA------------ 290 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTT 353 + GG + G PI G+I MD M D+TD VGD + +FG + + D+VA +GT Sbjct: 291 YAGGSVELHGRRAPIAGRICMDQCMIDVTDIPEAAVGDVVTLFGSETLTADEVAARAGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 +Y++L + ++ Y Sbjct: 351 SYEVLCLVSKHVSRIY 366 >gi|218894405|ref|YP_002443275.1| alanine racemase [Pseudomonas aeruginosa LESB58] gi|218774634|emb|CAW30451.1| catabolic alanine racemase [Pseudomonas aeruginosa LESB58] Length = 357 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 161/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +G AR AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALAAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EEG++LR + I +L G E + + + + S Sbjct: 60 IEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G ++ +++SH + AD+ QL F Sbjct: 120 WLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFAA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 +G E SL +S +L P RPGI LYG T ++ V+T E++ Sbjct: 180 ASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YG + R I V A+GYADGYP G F Sbjct: 239 VISVRDLPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHA-----------ADGTLVF 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 288 IDGNPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRVYS 355 >gi|42781229|ref|NP_978476.1| alanine racemase [Bacillus cereus ATCC 10987] gi|42737151|gb|AAS41084.1| alanine racemase [Bacillus cereus ATCC 10987] Length = 391 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GYALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|186685683|ref|YP_001868879.1| alanine racemase [Nostoc punctiforme PCC 73102] gi|186468135|gb|ACC83936.1| alanine racemase [Nostoc punctiforme PCC 73102] Length = 395 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 114/381 (29%), Positives = 178/381 (46%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL N + LS + AVVK +AYG G +A + +G V Sbjct: 23 SQRAWVEIDLGALSYNVQQLVQFLSPRTQLMAVVKADAYGHGALTVAQTVIQSGASWLGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKL---MSC 118 +V E ++LR +A I +L H P Q I NL P + S Q +S + M+ Sbjct: 83 ATVPEAIQLREGGIEAPILILGATHTPEQIHAIAQWNLQPTLCSPKQALVFSNILESMNH 142 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G P +++DTG +RLG + Q+A +F ++ I SHLA ADDP + Q Sbjct: 143 GSPVPVHIKLDTGMSRLGTNWQQAGEFVQLVQRLPHLSIASIYSHLATADDPDTTAMEEQ 202 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 RF I+ K +E LA+S+ L P H+ + R G+++YG + + + Sbjct: 203 HRRFEEAIAQIKAMEIEAPCLHLANSAAALTDPALHYDIVRVGLAVYGLYPAPHLQNAID 262 Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 V+ +AR+ ++ AG VSYG + R+ +AV IGYADG P +LS Sbjct: 263 LKPVLQLKARVTQVKTIAAGTAVSYGHKFIAPRELRLAVVGIGYADGVPRSLSN------ 316 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + I G V +G ITMD M D++ +I+ G+ + + G I DD A Sbjct: 317 -----KMQALIHGQRVSQIGTITMDQLMLDVSAIPNIQEGEVVTLLGKQGKEQISADDWA 371 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 372 EQLNTISWEILCGFKHRLPRV 392 >gi|170719388|ref|YP_001747076.1| alanine racemase [Pseudomonas putida W619] gi|169757391|gb|ACA70707.1| alanine racemase [Pseudomonas putida W619] Length = 357 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 172/369 (46%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + +L V+ S+ QL K Sbjct: 60 IEEALELRAAGIKAPMLLLEGFFEASELSLIAEHDLWCVVHSLWQLEAIEKT-PVHKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL ++ + +++SH A AD+ + Q+ F Sbjct: 119 LWLKLDSGMHRVGLHPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATEQQIAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S G+L P+ RPGI LYG T ++ +Q V+T ++ Sbjct: 179 A-ARQGLAAECSLRNSPGVLAWPHAPSDWVRPGIMLYGATPFEVAQAQAERLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RVISVRELPAGEPVGYGAKFISPRPTRVGVVAMGYADGYPRQA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+TD +G ++++G + +VA+ +GT Y + Sbjct: 287 MVAGKRSQLIGRVSMDMLCIDLTDVPEATIGSPVELWGKHVLASEVAMHAGTIPYQIFCN 346 Query: 361 IGTRYAKFY 369 + R Y Sbjct: 347 L-KRVPLDY 354 >gi|170717657|ref|YP_001784734.1| alanine racemase [Haemophilus somnus 2336] gi|168825786|gb|ACA31157.1| alanine racemase [Haemophilus somnus 2336] Length = 359 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 104/362 (28%), Positives = 171/362 (47%), Gaps = 15/362 (4%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +I ALK+N + + N++ A+VK NAYG G E ++ L++ V F V + Sbjct: 5 PPTARISSVALKHNIQVIKQKAKNSKVIAIVKANAYGHGLEFVSSTLHHL-VDCFGVARL 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E ++L I +L G + I N I + + + K Sbjct: 64 SEALRLCTEGITKPILLLEGFFSEDDLPIIAVNNIQTVIHNQEQLYVLKKAKLPNKIKVW 123 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L++DTG +RLG+ L++ DF + +SH + AD+ +QLERF + Sbjct: 124 LKIDTGMHRLGVDLEQVEDFYQQLVQCSNVKEIGFLSHFSRADELMCGYTEIQLERFLQV 183 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARII 243 +G E S+ +SSGIL + RPGI +YG + + + + V+T + +I Sbjct: 184 TEGKQG-ERSIVASSGILFWQQAYLDWIRPGIIMYGISPNNTPAEVYGLIPVMTLTSSLI 242 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 IR GE V YGG RD+ I V AIGY DGYP + G +I Sbjct: 243 TIRNHKKGEPVGYGGSWISERDTKIGVVAIGYGDGYPRDM-----------PQGTPVYIN 291 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G VPI+G+++MDM D+ +VGD + ++G ++ +++++ SG +Y+L+ ++ Sbjct: 292 GRKVPIVGRVSMDMLTVDLGIESQDKVGDEVILWGKELPIEEISAISGMISYELITKLTP 351 Query: 364 RY 365 R Sbjct: 352 RV 353 >gi|307297643|ref|ZP_07577449.1| alanine racemase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916903|gb|EFN47285.1| alanine racemase [Thermotogales bacterium mesG1.Ag.4.2] Length = 369 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 166/370 (44%), Gaps = 26/370 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL+A + N ++ + A+ VVK +AYG G +++ +GV V +EEG+K Sbjct: 10 IDLSAYRQNLVYLSGKASPAKLMVVVKADAYGHGAVELSKVAQESGVDRLAVAFLEEGIK 69 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQVD 129 +R I VL + + + +L +SS Q ++ P + L VD Sbjct: 70 IRQSGISLPILVLNYVEKKEIPTAKEFSLTLSLSSFAQ---LENIIGLNKQLPDFQLVVD 126 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-- 187 TG RLGL +E+++ +++ K ++ +H A AD+ S Q E F + Sbjct: 127 TGMRRLGLEWEESIELYNSAVRK-GINITGAYTHFATADEKGSGFVLEQREAFGRFLHGL 185 Query: 188 ---HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + E +++S+G + N F R GI+ YG ++ V++ + + Sbjct: 186 GQRRNRHFETHISNSAGTIYFDNSDFSYVRAGIATYGLQPSKETDENLKPVLSWVSCVSF 245 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +++ G VSYG RD L+A +GYADGY LS G I G Sbjct: 246 VKRIRTGYSVSYGRTFVADRDMLVATIPVGYADGYNRLLSNR-----------GYVIISG 294 Query: 305 YMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF----GPDIKLDDVALASGTTNYDLLV 359 +LG++ MD + DI+ + +GD + I G I +++A GT NY+++ Sbjct: 295 KRCKVLGRVCMDQFVVDISHIEKPVSIGDEVVIVGTQEGESISAEEIADLCGTINYEVVC 354 Query: 360 RIGTRYAKFY 369 I +R + Y Sbjct: 355 SISSRVPRVY 364 >gi|28373266|pdb|1EPV|A Chain A, Alanine Racemase With Bound Inhibitor Derived From D- Cycloserine gi|28373267|pdb|1EPV|B Chain B, Alanine Racemase With Bound Inhibitor Derived From D- Cycloserine gi|28373268|pdb|1FTX|A Chain A, Crystal Stucture Of Alanine Racemase In Complex With D- Alanine Phosphonate gi|28373269|pdb|1FTX|B Chain B, Crystal Stucture Of Alanine Racemase In Complex With D- Alanine Phosphonate Length = 387 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 152/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++DL A+ +N ++ L + AVVK NAYG G ++A AG V Sbjct: 4 HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 63 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR +A I VL P + + + L S L S Sbjct: 64 AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 123 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L +DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 124 HFHLXMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 183 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L P+ F + R GI++YG +P++ Sbjct: 184 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 243 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 244 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 294 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + L + G + + G I +DDVA Sbjct: 295 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 349 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 350 TINYEVPCTISYRVPRIF 367 >gi|152975352|ref|YP_001374869.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024104|gb|ABS21874.1| alanine racemase [Bacillus cytotoxicus NVH 391-98] Length = 392 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 169/376 (44%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++++L A+K+N N A VK NAYG G ++A A AGVQ V V+ Sbjct: 11 VEVNLDAIKHNVKEFKKRIHNENITMMAAVKANAYGHGAVEVAKAATEAGVQQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 EG++LR I VL + + +++ + + +L+ +++ Sbjct: 71 EGIELREAGVTVPILVLGYTPVEAAQDAIEYDIMMTVYRIEELSSINEIAKQLQTKARVH 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F ++ + +H + AD+ ++Q + F Sbjct: 131 VKIDTGMSRIGLQEEEVAPFLKELQKMNHIEVEGMYTHYSTADELDKTYTNMQTKLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K + + +S+G + N + R GI +YG H +Q ++ Sbjct: 191 VNTAKELGMPIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I++A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKRAKKNRGVSYGNTYMTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP+LG++ MD M D+T ++ + VGD + +G +I +++VA T Sbjct: 300 GHALINGIRVPVLGRVCMDQLMLDVTKAMPVRVGDEVVFYGKQGDEEISVEEVADLLDTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRAY 375 >gi|104784314|ref|YP_610812.1| alanine racemase [Pseudomonas entomophila L48] gi|122401266|sp|Q1I2V7|ALR_PSEE4 RecName: Full=Alanine racemase gi|95113301|emb|CAK18029.1| alanine racemase 2, PLP-binding, catabolic [Pseudomonas entomophila L48] Length = 357 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 170/366 (46%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AVVK +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVVKADAYGHGAVRCALALETE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A + +L G + +I + +L V+ S+ QL + Sbjct: 60 IEEALELRAAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIEQT-PVRKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+G+ ++ D +++SH A AD+ + Q+ F Sbjct: 119 IWLKMDTGMHRVGVHPKDYQDAYQRLLASGKVSRIVLMSHFARADELDAAATEQQVAVFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 E SL +S +L P+ RPGI LYG T ++ +Q V+T ++ Sbjct: 179 AARQGLSA-ECSLRNSPAVLGWPSIKSDWVRPGIMLYGATPFEVAQAEAARLQPVMTLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 238 RIISVRELPAGEPVGYGAKFISPRPTRVGVVAMGYADGYPRQA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T+ VG ++++G + DVA+ +GT Y + Sbjct: 287 VVAGKRTQLIGRVSMDMLCVDLTEVPEATVGSPVELWGKQVLASDVAMQAGTIPYQIFCN 346 Query: 361 IGTRYA 366 + R Sbjct: 347 L-KRVP 351 >gi|157803277|ref|YP_001491826.1| alanine racemase [Rickettsia canadensis str. McKiel] gi|166969427|sp|A8EXF8|ALR_RICCK RecName: Full=Alanine racemase gi|157784540|gb|ABV73041.1| alanine racemase [Rickettsia canadensis str. McKiel] Length = 355 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 187/364 (51%), Gaps = 21/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L+A+KNN+ + + + AVVK + YGLG +I+ AL + FFV S EEGV Sbjct: 8 INLSAIKNNYFLLQDICKTSLVGAVVKADGYGLGAVQISKALIEENCRHFFVASSEEGVN 67 Query: 71 LRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128 +R I VL G+ + + NLIP+++++ Q+ + + + P L Sbjct: 68 VRKALGIDVNILVLNGVFEHDALELIEYNLIPILNNLKQIEIWQQFGNLKNLLLPCYLHF 127 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NRLGLS E +N K L IISHLA +++ + N QL +F+ + + Sbjct: 128 NTGINRLGLSSNEIEQLINNRDLLKGLNLQYIISHLAISEEIDNPYNLEQLNKFKAYLRY 187 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + I+ASLA+S GI LG +YHF L RPG +LYG MQ VT +A II ++ Sbjct: 188 FPSIKASLANSGGIFLGQDYHFDLVRPGAALYGLNPL------MQNPVTLKAPIIHLQNL 241 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 + Y RDS+IA +GYADGY S GK FI G VP Sbjct: 242 TLDSHIGYNMTFTTKRDSVIATLPLGYADGYSRNFSNQ-----------GKVFINGRSVP 290 Query: 309 ILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 I+G+++MD+ D+TD I +G ++I G D +A GT Y++L +G RY Sbjct: 291 IVGRVSMDLINIDVTDLPPSDIFLGQEVEIIGNHCTPDKIASIIGTIGYEVLTSLGNRYR 350 Query: 367 KFYT 370 + YT Sbjct: 351 RKYT 354 >gi|330004917|ref|ZP_08305062.1| alanine racemase [Klebsiella sp. MS 92-3] gi|328536477|gb|EGF62821.1| alanine racemase [Klebsiella sp. MS 92-3] Length = 359 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G ++ + + P+ + + Sbjct: 62 EALRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQADLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S K + Q ++SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P H+ RPGI LYG + K Q V+T + Sbjct: 182 TEGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|294624631|ref|ZP_06703303.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601066|gb|EFF45131.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 366 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 164/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIGAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTAHTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRVY 354 >gi|1942328|pdb|1SFT|A Chain A, Alanine Racemase gi|1942329|pdb|1SFT|B Chain B, Alanine Racemase gi|3891941|pdb|1BD0|A Chain A, Alanine Racemase Complexed With Alanine Phosphonate gi|3891942|pdb|1BD0|B Chain B, Alanine Racemase Complexed With Alanine Phosphonate Length = 388 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++DL A+ +N ++ L + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR +A I VL P + + + L S L S Sbjct: 65 AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L++DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L P+ F + R GI++YG +P++ Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + L + G + + G I +DDVA Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|2506170|sp|P10724|ALR_BACST RecName: Full=Alanine racemase Length = 388 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++DL A+ +N ++ L + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR +A I VL P + + + L S L S Sbjct: 65 AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L++DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L P+ F + R GI++YG +P++ Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + L + G + + G I +DDVA Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|288962767|ref|YP_003453061.1| alanine racemase [Azospirillum sp. B510] gi|288915033|dbj|BAI76517.1| alanine racemase [Azospirillum sp. B510] Length = 375 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 189/368 (51%), Gaps = 18/368 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + A +AVVK +AYGLG ++ PAL AG + F V EE Sbjct: 16 LTVDLGAVVANWAQLRDRVAPAECSAVVKADAYGLGVARVVPALAAAGCRTFVVAQFEEA 75 Query: 69 VKLRLYT----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 + +R PQA++F L G+ PG E ++PV++ + + + + S G P Sbjct: 76 LAVRRALEPVAPQAQVFSLGGMPPGCEGEFLANRILPVLNHLSGIASWRAFAASRGEVLP 135 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + +DTG NRLGL E D + + + ++HLACA+D + +N QL+RFR Sbjct: 136 AVVHIDTGMNRLGLGPDELDDLAAHPEWLEGIDVRYWMTHLACAEDFDNPMNGEQLDRFR 195 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 ++ +AS A+SSGI G +YHF L RPG +LYG +PM+ V +AR++ Sbjct: 196 DALARLPKAKASFANSSGIFHGKDYHFDLARPGCALYGVNPTPRLPNPMRGTVRLDARLL 255 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R + V Y K+T IA IGYADGY +L G G F+ Sbjct: 256 QVRNCASPMTVGYAAAHKVTGPVRIATIGIGYADGYMRSLGG-----------KGHVFVD 304 Query: 304 GYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 G PI+G+I+MD+ D+T G +++ GP+ +D VA +GT Y+++ + Sbjct: 305 GVAAPIVGRISMDLITIDVTGLPESVAHAGRMVELIGPNRPVDRVAEEAGTIGYEIMTSL 364 Query: 362 GTRYAKFY 369 G RY + Y Sbjct: 365 GRRYHRVY 372 >gi|21244412|ref|NP_643994.1| alanine racemase [Xanthomonas axonopodis pv. citri str. 306] gi|23813646|sp|Q8PGD0|ALR_XANAC RecName: Full=Alanine racemase gi|21110074|gb|AAM38530.1| alanine racemase [Xanthomonas axonopodis pv. citri str. 306] Length = 366 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 165/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKLDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRELPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P+ G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLAGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRVY 354 >gi|152989346|ref|YP_001350978.1| biosynthetic alanine racemase [Pseudomonas aeruginosa PA7] gi|150964504|gb|ABR86529.1| alanine racemase [Pseudomonas aeruginosa PA7] Length = 358 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 167/368 (45%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N++ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYNLAKRCAPQRQAFAVVKANAYGHGAREVVTALHDE-ADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + Sbjct: 61 LEEAAEVRALHADARILLLEGCFEASEYALAGQLRLDLVIQGLEQGEAFLAAGLDTPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + +ISH ACAD+ + + Q+E F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRNHPGVRELNLISHFACADERNHPLTEQQVECFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + ++ ++ AR Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFADLSAAELGLKPAMSLTAR 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG R + I + GYADGYP G Sbjct: 240 LISVREVAAGESVGYGAGWVAERPTRIGTVSCGYADGYPRNA-----------PAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D+ + VGD ++++G + +D+VA A G+ Y+LL ++ Sbjct: 289 VGGRRTRLAGRVSMDMLTVDLGGLPDVRVGDPVELWGAQLAVDEVACACGSIGYELLSKV 348 Query: 362 GTRYAKFY 369 R + Y Sbjct: 349 TARVPRRY 356 >gi|288941546|ref|YP_003443786.1| alanine racemase [Allochromatium vinosum DSM 180] gi|288896918|gb|ADC62754.1| alanine racemase [Allochromatium vinosum DSM 180] Length = 367 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 107/375 (28%), Positives = 167/375 (44%), Gaps = 20/375 (5%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S LR +I L A+++N+ +L+ +R AVVK NAYG G +A L + F Sbjct: 3 RSARPLRARIHLDAIRHNYRRAKSLAPRSRALAVVKANAYGHGAIAVARTLADE-ADGFA 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V VEE ++LR Q + +L G+ E + + + ++ + + Sbjct: 62 VACVEEALELRESGIQEPMLLLEGVFSPDEIALVERAGLAMVVHCREQLDWVLNAHPSRR 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG +R+G SL E + + ++H A AD+ S Q+E Sbjct: 122 LDCWIKLDTGMHRVGFSLSEFAEVNARLAACPHVGERVAMTHFARADEIDHPYTSAQIEA 181 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV------ 235 F ++ + I SLA+S+ + P H TRPGI LYG + Sbjct: 182 FEQALNGAR-IGRSLANSAAVFAWPQAHGDWTRPGIMLYGVSPFAGTGSNANMDAGDLRP 240 Query: 236 -VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T E+ +I +R AGE V YGG+ R + + VAAIGYADGYP Sbjct: 241 AMTLESALIAVRDLDAGEPVGYGGRFVCERPTRVGVAAIGYADGYPRHA----------- 289 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 G + G + ++G+++MDM D+T GD ++++G + VA AS T Sbjct: 290 RDGTPIAVGGRLTRLIGRVSMDMITLDLTGFDEARPGDPVELWGRTVPAGAVAEASDTIA 349 Query: 355 YDLLVRIGTRYAKFY 369 Y L IG R Y Sbjct: 350 YQLFTGIGRRVPLMY 364 >gi|328952024|ref|YP_004369358.1| Alanine racemase [Desulfobacca acetoxidans DSM 11109] gi|328452348|gb|AEB08177.1| Alanine racemase [Desulfobacca acetoxidans DSM 11109] Length = 399 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 24/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N + L +DL AL+ N+ + G + AV+K +AYG G +A L AG F V Sbjct: 29 NRMVELTVDLAALQYNFRQLRQYCGQKVKILAVIKADAYGHGLLPVAQVLAPAGADYFGV 88 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVS 121 EGV LR I +L G+ P + +L + ++ Sbjct: 89 AYCSEGVSLRQAGITLPILLLMGVLPEEAAEAVAHDLEVTLFCREMAAALAAQARQQSKK 148 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG RLGL E + F + +L+ +ISH A +D QL Sbjct: 149 VKVHVKIDTGMGRLGLLPTELMPFLESLGEFPELELAGLISHFAASDCCDRSYTHQQLAD 208 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQT 234 F L+ +G +A+S+ +L H + R GI+LYG + P++ Sbjct: 209 FERLLKGVRGRGWAVPASHIANSAAVLHVHQAHLNMVRAGITLYGSPPSLETPSPIPLKP 268 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ R++ +++ G +SYG + SLIA +GY +GY +S Sbjct: 269 VMSLRTRVLQLQELPPGCSISYGRTYFTDKPSLIAALPVGYCNGYSRLMSNR-------- 320 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G + G PI G++ M++TM D+T+ ++ GD + G D + DD+A + Sbjct: 321 ---GCVLLHGQRAPIRGRVCMNLTMVDVTEIPGVKKGDMATLLGEDGSDRLTGDDLAAWA 377 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ +G + Y Sbjct: 378 ETISYEIYCMMGNSNYRRY 396 >gi|4558012|pdb|2SFP|A Chain A, Alanine Racemase With Bound Propionate Inhibitor gi|4558013|pdb|2SFP|B Chain B, Alanine Racemase With Bound Propionate Inhibitor gi|21465981|pdb|1L6F|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L- Alanine gi|21465982|pdb|1L6F|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L- Alanine gi|21465983|pdb|1L6G|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D- Alanine gi|21465984|pdb|1L6G|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D- Alanine gi|37926920|pdb|1NIU|A Chain A, Alanine Racemase With Bound Inhibitor Derived From L- Cycloserine gi|37926921|pdb|1NIU|B Chain B, Alanine Racemase With Bound Inhibitor Derived From L- Cycloserine Length = 388 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 152/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++DL A+ +N ++ L + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR +A I VL P + + + L S L S Sbjct: 65 AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L +DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLXMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L P+ F + R GI++YG +P++ Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + L + G + + G I +DDVA Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|289665503|ref|ZP_06487084.1| alanine racemase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 366 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 166/368 (45%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQALIDLEALRHNYRLAKQL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + ++ V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFRQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ GE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRELPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGKVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVSPLAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRVY 354 >gi|206975085|ref|ZP_03235999.1| alanine racemase [Bacillus cereus H3081.97] gi|217959579|ref|YP_002338131.1| alanine racemase [Bacillus cereus AH187] gi|222095721|ref|YP_002529778.1| alanine racemase [Bacillus cereus Q1] gi|206746506|gb|EDZ57899.1| alanine racemase [Bacillus cereus H3081.97] gi|217065584|gb|ACJ79834.1| alanine racemase [Bacillus cereus AH187] gi|221239779|gb|ACM12489.1| alanine racemase [Bacillus cereus Q1] Length = 391 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|158321297|ref|YP_001513804.1| alanine racemase [Alkaliphilus oremlandii OhILAs] gi|158141496|gb|ABW19808.1| alanine racemase [Alkaliphilus oremlandii OhILAs] Length = 390 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 27/380 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +I+L LK+N H++ + + AV+K + YG G +IA L G V Sbjct: 8 RPVWAEINLDHLKHNIHAIKNIVKKDTIVCAVIKADGYGHGAAEIAKTLLENGADRIAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++ E V LR + I VL Q ++I D N+ + S Q +S Sbjct: 68 TLSEAVALRKSGYEVPIMVLGYTPEHQGELILDNNITQTVYSYDQALEFSNAAKQKNQKM 127 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG +RLG +EA+ FN + I +H A ADD Q Sbjct: 128 TLHLKIDTGMSRLGFQPNEEAIHDIKKIFNLPNLTIEGIFTHFAAADDRDKAYTYQQFHT 187 Query: 182 FRTLI----SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 F + I S+S ++ P + + RPGI LYG + Sbjct: 188 FMDFVKKLEQEGCPIPIKHVSNSAAIMDLPEMNLDMVRPGIILYGLYPSDDVDKSRIELK 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +A+I ++ +SYG + + D I IGYADGY +SG Sbjct: 248 QVMELKAKISHVKTLTKDRGISYGLKYTTSGDEKIITMPIGYADGYTRMMSG-------- 299 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + +KG +P++G+I MD M + T +E GD + ++ D + +DD+A Sbjct: 300 ---KAEAIVKGNKIPLVGRICMDQCMANATGL-DVEPGDEVTLYSNDRESGLSIDDIANK 355 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY+++ +G R + Y Sbjct: 356 LGTINYEIVCMLGKRVPRVY 375 >gi|39936148|ref|NP_948424.1| alanine racemase [Rhodopseudomonas palustris CGA009] gi|39650003|emb|CAE28526.1| putative alanine racemase [Rhodopseudomonas palustris CGA009] Length = 413 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 179/364 (49%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + + + A VVK +AYG G + AL AG + FFV ++ E Sbjct: 36 LTIDLDALVANWRKLEKTAIPSECAGVVKGDAYGCGAGPVTKALLAAGCKTFFVATLSEA 95 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 + +R P A ++VL G P N PVI + +L + G AL Sbjct: 96 LVVREAAPNATLYVLDGFFPNSGDEFAKLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG +RLGL++ EA ++L+ISHLACAD + +N+ Q FR + Sbjct: 156 IDTGMSRLGLTIVEAQGIVPRIVA-GDHGITLVISHLACADLVNHQLNAKQAAAFREIAG 214 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL++SSGI LG + F L RPG +LYG +PMQ VV +ARI+ +R Sbjct: 215 QFTGVSASLSASSGIFLGSQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YG R S IAV + GYADGY D G I G Sbjct: 275 VERGDTVGYGATWSARRPSKIAVVSAGYADGYFRAAGSSDGTR------GADVIIAGQRC 328 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI G+I+MD+ DITD + G + G I +D++ GT Y++L +G RY Sbjct: 329 PIAGRISMDLLAVDITDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGRRY 388 Query: 366 AKFY 369 + Y Sbjct: 389 TRIY 392 >gi|218692336|ref|YP_002400548.1| alanine racemase [Escherichia coli ED1a] gi|331660619|ref|ZP_08361551.1| alanine racemase [Escherichia coli TA206] gi|218429900|emb|CAR10727.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli ED1a] gi|331051661|gb|EGI23700.1| alanine racemase [Escherichia coli TA206] Length = 359 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLNEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|261418553|ref|YP_003252235.1| alanine racemase [Geobacillus sp. Y412MC61] gi|319765367|ref|YP_004130868.1| alanine racemase [Geobacillus sp. Y412MC52] gi|261375010|gb|ACX77753.1| alanine racemase [Geobacillus sp. Y412MC61] gi|317110233|gb|ADU92725.1| alanine racemase [Geobacillus sp. Y412MC52] Length = 384 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL A+ +N ++ L G + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWVEIDLDAIYDNVANLRRFLPGGTQIMAVVKANAYGHGDAQVAATALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR A I VL P + + + + L S L + Sbjct: 65 AFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGSTPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L++DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPFVLEGVYTHFATADEVNTDYFSYQYAR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L + F + R GIS+YG + + ++ Sbjct: 185 FLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPLLPYELKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + + L + G + + G I +DDVA G Sbjct: 296 ---HVLVGGQRAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEVISIDDVARHLG 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|332288773|ref|YP_004419625.1| alanine racemase [Gallibacterium anatis UMN179] gi|330431669|gb|AEC16728.1| alanine racemase [Gallibacterium anatis UMN179] Length = 357 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 106/361 (29%), Positives = 172/361 (47%), Gaps = 15/361 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 KI ALK+N +++L+ N++ AVVK NAYG G E ++ + + V F V + Sbjct: 4 ATAKISSLALKHNIEKIHSLAPNSKIIAVVKANAYGHGVEFVSQTVQDN-VDCFGVARLG 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + I N + + + + Sbjct: 63 EALRLRSNGITKPILLLEGFFSASDLPILSVNNLETVVHCDEQLEALLAAKLPNPINVWI 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++DTG +RLG+ L E + + ISH + AD+ S QL+RF T Sbjct: 123 KIDTGMHRLGVQLDEVDRYYQALSASQNVNQIRFISHFSRADELDSDYTLKQLDRFLTAC 182 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIIL 244 + G E S+A+S GIL + H RPGI +YG + + ++ + V+T + +I Sbjct: 183 AGKVG-EKSIAASGGILFWKDSHLDWIRPGIIMYGISANSTPSSAYDLIPVMTLTSSLIA 241 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R GE V YGG+ +D+ I V AIGY DGYP V G +I G Sbjct: 242 VRNHKKGEPVGYGGRWVSEKDTKIGVVAIGYGDGYPR-----------DVPTGTPVYING 290 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+GK++MDM D+ +VGD + ++G ++ ++++A G +Y+L+ ++ R Sbjct: 291 RRVPIVGKVSMDMLTVDLGADAQDKVGDEVILWGKELPIEEIAEIIGVISYELVTKLTPR 350 Query: 365 Y 365 Sbjct: 351 V 351 >gi|218707674|ref|YP_002415193.1| alanine racemase [Escherichia coli UMN026] gi|293402691|ref|ZP_06646788.1| alanine racemase [Escherichia coli FVEC1412] gi|293407785|ref|ZP_06651625.1| alanine racemase [Escherichia coli B354] gi|298378219|ref|ZP_06988103.1| alanine racemase [Escherichia coli FVEC1302] gi|300899831|ref|ZP_07118045.1| alanine racemase [Escherichia coli MS 198-1] gi|218434771|emb|CAR15704.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli UMN026] gi|284924146|emb|CBG37245.1| alanine racemase [Escherichia coli 042] gi|291429606|gb|EFF02620.1| alanine racemase [Escherichia coli FVEC1412] gi|291472036|gb|EFF14518.1| alanine racemase [Escherichia coli B354] gi|298280553|gb|EFI22054.1| alanine racemase [Escherichia coli FVEC1302] gi|300356602|gb|EFJ72472.1| alanine racemase [Escherichia coli MS 198-1] Length = 359 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCDATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|196039765|ref|ZP_03107069.1| alanine racemase [Bacillus cereus NVH0597-99] gi|196029468|gb|EDX68071.1| alanine racemase [Bacillus cereus NVH0597-99] Length = 391 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|170769516|ref|ZP_02903969.1| alanine racemase [Escherichia albertii TW07627] gi|170121573|gb|EDS90504.1| alanine racemase [Escherichia albertii TW07627] Length = 359 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEADLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHFARADEPTCGATEKQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQSQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|157691230|ref|YP_001485692.1| alanine racemase [Bacillus pumilus SAFR-032] gi|157679988|gb|ABV61132.1| alanine racemase [Bacillus pumilus SAFR-032] Length = 392 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 174/386 (45%), Gaps = 31/386 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56 M +N F R +I+L+A+K+N M G + + AVVK NAYG G ++A A AG Sbjct: 1 MDTNAFYRDTWAEINLSAIKHNVSHMKDHIGQSVQLMAVVKANAYGHGDIEVASAALKAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E V LR +A I VL + K+ N+I S+ L +M Sbjct: 61 ADILAVAFLDEAVSLRNKGIKAPILVLGAVPTEYVKVAVRYNVIMTAYSIDWLKDVINMM 120 Query: 117 --SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSH 173 G + L++D+G NRLG+ E ++ ++ QL + +H A AD+ Sbjct: 121 EGQMGQPIRFHLKIDSGMNRLGVKTIEQVNEVKKLVDEHSYLQLEGVFTHFATADEKDEA 180 Query: 174 VNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----N 227 Q++ F+TL+ H + A+S+ L + F + R GIS+YG + Sbjct: 181 YFDRQVDTFQTLLEPLHTDKLLIHCANSAAGLRFKDVLFNMVRFGISMYGLSPSEEIKDE 240 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ ++ ++ ++ GE VSYG +D+ I +GYADG+ L Sbjct: 241 LPFKLEEAMSLHTKLAHVKHIQKGESVSYGATYTANQDTWIGTVPVGYADGWIRKL---- 296 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 G + + G I G+I MD M ++ D L + G+ + + G I++ Sbjct: 297 --------AGTEVLVGGKRRKITGRICMDQFMVELKDKLPV--GEPVVLIGKQGEDMIQV 346 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 D++A T NY++ IG R + Y Sbjct: 347 DEIAKRLETINYEITCSIGHRVPRVY 372 >gi|153816433|ref|ZP_01969101.1| hypothetical protein RUMTOR_02686 [Ruminococcus torques ATCC 27756] gi|145846221|gb|EDK23139.1| hypothetical protein RUMTOR_02686 [Ruminococcus torques ATCC 27756] Length = 408 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 161/386 (41%), Gaps = 27/386 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + + +IDL A+ N M + AR AV+K + YG G IA + V Sbjct: 26 MDQHNRVCAQIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVW 85 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + V +EE V LR + I VL + P Q + + + + + S Sbjct: 86 GYAVACIEEAVSLRKEGIKKPILVLGCVFPDQYETMIKNEIRAAVYTKEMAEGMSDEAVR 145 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + + +++DTG R+G + E+++ + + +H A AD+ Sbjct: 146 QGKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTL 205 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q ERF + + +S+GI+ PN L R GIS YG Sbjct: 206 KQHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKS 265 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ ++ + I +++ AG +SYGG IA +GY DGYP +LS Sbjct: 266 NVHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN--- 322 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G I+G I+G++ MD M D+TD D + + G +I ++ Sbjct: 323 --------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVE 374 Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370 +++ SG NY+ + +G R + YT Sbjct: 375 ELSKLSGRFNYEFVCCLGKRIPRVYT 400 >gi|52143353|ref|YP_083477.1| alanine racemase [Bacillus cereus E33L] gi|51976822|gb|AAU18372.1| alanine racemase [Bacillus cereus E33L] Length = 391 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAVAEEAIQYDVMMTVYRSEDLQGINEIAKRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|192291866|ref|YP_001992471.1| alanine racemase [Rhodopseudomonas palustris TIE-1] gi|192285615|gb|ACF01996.1| alanine racemase [Rhodopseudomonas palustris TIE-1] Length = 413 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 179/364 (49%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + + + A VVK +AYG G + AL AG + FFV ++ E Sbjct: 36 LTIDLDALVANWRKLEKTAIPSECAGVVKGDAYGCGAGPVTKALLAAGCKTFFVATLSEA 95 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R P A ++VL G P N PVI + +L + G AL Sbjct: 96 RVVREAAPNATLYVLDGFFPNSGDEFAKLNCQPVIGDLYELAEWDVFCRRTGWRGGAALH 155 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG +RLGL++ EA ++L+ISHLACAD + +N+ Q FR + Sbjct: 156 IDTGMSRLGLTIVEAQGIVPRIVA-GDHGITLVISHLACADLVNHQLNAKQAAAFREIAG 214 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL++SSGI LGP + F L RPG +LYG +PMQ VV +ARI+ +R Sbjct: 215 QFTGVSASLSASSGIFLGPQFAFDLVRPGAALYGINPTPEADNPMQPVVDLKARIVQVRS 274 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YG R S IAV + GYADGY D G I G Sbjct: 275 VERGDTVGYGATWSARRPSKIAVVSAGYADGYFRAAGSSDGTR------GADVIIAGQRC 328 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI G+I+MD+ DITD + G + G I +D++ GT Y++L +G RY Sbjct: 329 PIAGRISMDLLAVDITDLPANAARRGMMATLIGDGITVDELGHHFGTIGYEVLTSLGRRY 388 Query: 366 AKFY 369 + Y Sbjct: 389 TRIY 392 >gi|152972916|ref|YP_001338062.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957765|gb|ABR79795.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 359 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G ++ + + P+ + + Sbjct: 62 EALRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQADLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S K + Q ++SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P H+ RPGI LYG + + Q V+T + Sbjct: 182 TEGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGRDFGCQPVMTLSSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|167013239|pdb|2ODO|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Alanine Racemase gi|167013240|pdb|2ODO|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Alanine Racemase gi|167013241|pdb|2ODO|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Alanine Racemase gi|167013242|pdb|2ODO|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Alanine Racemase Length = 357 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 166/370 (44%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ ++G A+ AV+ +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYQLAREVTG-AKALAVIXADAYGHGAVRCAQALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A I +L G E +I + + V+ S+ QL + Sbjct: 60 IEEALELRAAGIRAPILLLEGFFEADELPLIVEHDFWCVVHSLWQLDAIEQ-ARLAKPIH 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L +D+G +R+GL + +++SH A AD+ + Q+ F Sbjct: 119 VWLXLDSGMHRVGLHPNDYKAAYQRLQASANVAKIVLMSHFARADELDCTRSVEQVAVFL 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 + E SL +S +L P RPG+ LYG + +Q V+T E+ Sbjct: 179 GARADLTA-EISLRNSPAVLGWPRVPSDWVRPGLMLYGSSPFDEPQATASRLQPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG + + I V A+GYADGYP G Sbjct: 238 KVICVRELPAGEPVGYGARFITPKPMRIGVVAMGYADGYPRQA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 F+ G +LG+++MDM D+TD +G ++++G +I +VA A+ T Y + Sbjct: 287 FVDGVRSQLLGRVSMDMLCIDLTDVPQAGLGSTVELWGKNILASEVATAADTIPYQIFCN 346 Query: 361 IGTRYAKFYT 370 + R + Y+ Sbjct: 347 L-KRVPRLYS 355 >gi|301021579|ref|ZP_07185579.1| alanine racemase [Escherichia coli MS 69-1] gi|300397977|gb|EFJ81515.1| alanine racemase [Escherichia coli MS 69-1] Length = 359 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWGSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|237728136|ref|ZP_04558617.1| alanine racemase 1 [Citrobacter sp. 30_2] gi|226910147|gb|EEH96065.1| alanine racemase 1 [Citrobacter sp. 30_2] Length = 359 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 103/368 (27%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDASDLPTISAQRLHTAVHNQEQLEALEAAKLAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + + + Q I+SH A AD+P QL+ F + Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDIFNSF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPG+ LYG + I Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG + RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|182419267|ref|ZP_02950520.1| alanine racemase [Clostridium butyricum 5521] gi|237667853|ref|ZP_04527837.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376907|gb|EDT74478.1| alanine racemase [Clostridium butyricum 5521] gi|237656201|gb|EEP53757.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 388 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 160/381 (41%), Gaps = 27/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL N ++ +L+ + AVVK + YG G AP L G V Sbjct: 6 RPVWAEIDLDALAYNMKNIKSLAEDKEVIAVVKADCYGHGAIDTAPVLLENGASRLAVAV 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + EG++LR A I +L + + ++ + S+ SK S Sbjct: 66 LTEGIELRKAKITAPIMILGYTPEYLGEELITYDIEQTVYSLEYAQNLSKTALSLNKKAK 125 Query: 124 YALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G E L + + + +H + AD+ + Q +++ Sbjct: 126 IHIALDTGMGRIGFMPNETSLKEVSEICSLPGLDVIGMFTHFSTADEENKDYTLEQFDKY 185 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYH--FQLTRPGISLYGGTDKIN---KSHPM 232 + + +++S I+ P R GI LYG ++ + Sbjct: 186 MNFLHELSKLNISIPLKHVSNSGAIMDMPETFKDLDAVRAGIILYGYYPSHEVKKENLSL 245 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T +A++ +++ +SYG K R S+IA IGYADGY L Sbjct: 246 KPALTIKAKVAHVKEMDENMYISYGRTFKTKRKSIIATIPIGYADGYSRLL--------- 296 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G K + G +VPI+G+I MD M D+TD+ +++ GD + I G I DD A Sbjct: 297 --IPGAKVIVNGKLVPIVGRICMDQCMIDVTDAGTVKTGDEVIILGQFENLKINADDYAQ 354 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L R K Y Sbjct: 355 ILGTINYEVLCMFKHRIPKVY 375 >gi|317500186|ref|ZP_07958418.1| alanine racemase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898401|gb|EFV20440.1| alanine racemase [Lachnospiraceae bacterium 8_1_57FAA] Length = 399 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 161/386 (41%), Gaps = 27/386 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + + +IDL A+ N M + AR AV+K + YG G IA + V Sbjct: 17 MDQHNRVCAQIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVW 76 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + V +EE V LR + I VL + P Q + + + + + S Sbjct: 77 GYAVACIEEAVSLRKEGIKKPILVLGCVFPDQYETMIKNEIRAAVYTKEMAEGMSDEAVR 136 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + + +++DTG R+G + E+++ + + +H A AD+ Sbjct: 137 QGKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTL 196 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q ERF + + +S+GI+ PN L R GIS YG Sbjct: 197 KQHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKS 256 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ ++ + I +++ AG +SYGG IA +GY DGYP +LS Sbjct: 257 NVHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN--- 313 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G I+G I+G++ MD M D+TD D + + G +I ++ Sbjct: 314 --------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVE 365 Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370 +++ SG NY+ + +G R + YT Sbjct: 366 ELSKLSGRFNYEFVCCLGKRIPRVYT 391 >gi|296272487|ref|YP_003655118.1| alanine racemase [Arcobacter nitrofigilis DSM 7299] gi|296096661|gb|ADG92611.1| alanine racemase [Arcobacter nitrofigilis DSM 7299] Length = 399 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 27/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +I+L L +N ++ +++ AV+K + YG G IA L G Sbjct: 1 MDLSRAVWTEINLDNLAHNMRETRRITNIDSKITAVIKADGYGHGAVAIAKTLLENGADR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V ++ E + LR I VL K I + N+I I ++ Q +S++ Sbjct: 61 FAVATLSEALLLRNSFSDVEILVLGYTPEHLAKDIIENNIIQTIYTLKQAKEFSRVAISL 120 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + +++DTG +RLG+ +E ++ + + + I +H A AD+ Sbjct: 121 NKNLVVHIKLDTGMHRLGMPFSEETIETILDISKHEGLFIEGIFTHFAIADNIDKKYTKQ 180 Query: 178 QLERFRTLIS----HYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q+E+F +++ I +++S+ I+ P ++F + R GI LYG + +H + Sbjct: 181 QVEKFTFIVNSLEEKGLNIPIKHVSNSAAIIDLPEFNFDMVRAGIMLYGLYPSKDVNHNL 240 Query: 233 QT---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 V+ +A I +++ A VSYG K + S +A IGYADGY LSG Sbjct: 241 INLKEVMCLKANISQVKELEANCGVSYGLTYKCEKKSKVATLPIGYADGYTRMLSG---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDD 345 K + VP++G I MD + D+T + +GD + +FG + +DD Sbjct: 297 -------KAKVLVNNTKVPVIGSICMDQCIIDVTGL-DVNMGDEVILFGGNNPNAIAIDD 348 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 ++ T NY+++ I R + Y Sbjct: 349 ISNLLNTINYEIVCMIDKRVPRVY 372 >gi|283787218|ref|YP_003367083.1| alanine racemase [Citrobacter rodentium ICC168] gi|282950672|emb|CBG90346.1| alanine racemase [Citrobacter rodentium ICC168] Length = 359 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRQLAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G + + + + S + Sbjct: 62 EALRLRAGGITQPVLLLEGFFEASDLPTISAQHLHTAVHNEEQLAALESASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + K + Q IISH A AD+P S QL F T Sbjct: 122 KLDTGMHRLGVLPEQAEAFYQRLTKCKNVRQPVNIISHFARADEPESGATEKQLNIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWSQSHFNWARPGIILYGVSPLENRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG + RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPEAQDKAGDPVILWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|161505290|ref|YP_001572402.1| alanine racemase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866637|gb|ABX23260.1| hypothetical protein SARI_03431 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 359 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLREGGITQPILLLEGFFDAADLPTISAQRLHTAVHNQEQLTALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QLE F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLEIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CQDKAG-KRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAARDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + + GD + ++G D+ ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDKAGDPVVLWGEDLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMEY 357 >gi|331665722|ref|ZP_08366616.1| alanine racemase [Escherichia coli TA143] gi|331056773|gb|EGI28767.1| alanine racemase [Escherichia coli TA143] Length = 359 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCDATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKLG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|238892526|ref|YP_002917260.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044] gi|238544842|dbj|BAH61193.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G ++ + + P+ + + Sbjct: 62 EALRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQADLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S K + Q ++SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P H+ RPGI LYG + + Q V+T + Sbjct: 182 TEGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGRDFGCQPVMTLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|146305288|ref|YP_001185753.1| alanine racemase [Pseudomonas mendocina ymp] gi|145573489|gb|ABP83021.1| alanine racemase [Pseudomonas mendocina ymp] Length = 362 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 107/373 (28%), Positives = 166/373 (44%), Gaps = 23/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ LSG AR AVVK +AYG G + A AL + F V Sbjct: 2 RPARALIDLDALRHNYQLARELSG-ARALAVVKADAYGHGAVRCAQALQSE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR +A I +L G E + D + + + + Sbjct: 60 IEEALALREAGIRAPILLLEGFFEADELALIDQHELWCVVHAQWQIEAIEQARLSRPLTL 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+GL E + +++SH A AD+P QL F+ Sbjct: 120 WLKLDSGMHRVGLHPAEYQEAYRRLLASGKVGKIVLMSHFARADEPECERTVEQLAVFQQ 179 Query: 185 LISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYGGTDKI---NKSHPMQTVV 236 E SL +S +L P RPGI LYG T ++ +Q V+ Sbjct: 180 -ARQGLAAEVSLCNSPAVLGWPQLFEKTGASDWVRPGIMLYGATPFEQAQEQAARLQPVM 238 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E+++I +R+ AGE V YG + R + + V AIGYADGYP Sbjct: 239 TLESKVISVRELPAGEPVGYGARFVSERPTRVGVVAIGYADGYPRHA-----------PT 287 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G + ++G+++MDM D+TD +G ++++G + DVA+A+G+ Y Sbjct: 288 GTPVAVDGQLTRLIGRVSMDMLTVDLTDLPQAGLGSRVELWGKQVLASDVAMAAGSIPYQ 347 Query: 357 LLVRIGTRYAKFY 369 + + R Y Sbjct: 348 IFCNL-RRAPLLY 359 >gi|331655873|ref|ZP_08356861.1| alanine racemase [Escherichia coli M718] gi|331046227|gb|EGI18317.1| alanine racemase [Escherichia coli M718] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGSTEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|206581084|ref|YP_002241006.1| alanine racemase [Klebsiella pneumoniae 342] gi|290512391|ref|ZP_06551758.1| alanine racemase [Klebsiella sp. 1_1_55] gi|206570142|gb|ACI11918.1| alanine racemase [Klebsiella pneumoniae 342] gi|289775386|gb|EFD83387.1| alanine racemase [Klebsiella sp. 1_1_55] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRDLAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G ++ + + P+ + + Sbjct: 62 EALRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQADLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S K + Q ++SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P H+ RPGI LYG + K Q V+T + Sbjct: 182 TEGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|60594046|pdb|1XQK|A Chain A, Effect Of A Y265f Mutant On The Transamination Based Cycloserine Inactivation Of Alanine Racemase gi|60594047|pdb|1XQK|B Chain B, Effect Of A Y265f Mutant On The Transamination Based Cycloserine Inactivation Of Alanine Racemase gi|60594048|pdb|1XQL|A Chain A, Effect Of A Y265f Mutant On The Transamination Based Cycloserine Inactivation Of Alanine Racemase gi|60594049|pdb|1XQL|B Chain B, Effect Of A Y265f Mutant On The Transamination Based Cycloserine Inactivation Of Alanine Racemase Length = 388 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 152/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++DL A+ +N ++ L + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR +A I VL P + + + L S L S Sbjct: 65 AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L +DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLXMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L P+ F + R GI++YG +P++ Sbjct: 185 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VS+G + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSFGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + L + G + + G I +DDVA Sbjct: 296 ---HVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|15610559|ref|NP_217940.1| alanine racemase [Mycobacterium tuberculosis H37Rv] gi|15843019|ref|NP_338056.1| alanine racemase [Mycobacterium tuberculosis CDC1551] gi|31794604|ref|NP_857097.1| alanine racemase [Mycobacterium bovis AF2122/97] gi|121639348|ref|YP_979572.1| alanine racemase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663287|ref|YP_001284810.1| alanine racemase [Mycobacterium tuberculosis H37Ra] gi|148824630|ref|YP_001289384.1| alanine racemase [Mycobacterium tuberculosis F11] gi|167968690|ref|ZP_02550967.1| alanine racemase [Mycobacterium tuberculosis H37Ra] gi|215405459|ref|ZP_03417640.1| alanine racemase [Mycobacterium tuberculosis 02_1987] gi|215413331|ref|ZP_03422016.1| alanine racemase [Mycobacterium tuberculosis 94_M4241A] gi|215428925|ref|ZP_03426844.1| alanine racemase [Mycobacterium tuberculosis T92] gi|215432390|ref|ZP_03430309.1| alanine racemase [Mycobacterium tuberculosis EAS054] gi|215447752|ref|ZP_03434504.1| alanine racemase [Mycobacterium tuberculosis T85] gi|218755205|ref|ZP_03534001.1| alanine racemase [Mycobacterium tuberculosis GM 1503] gi|219559485|ref|ZP_03538561.1| alanine racemase [Mycobacterium tuberculosis T17] gi|224991844|ref|YP_002646533.1| putative alanine racemase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800470|ref|YP_003033471.1| alanine racemase alr [Mycobacterium tuberculosis KZN 1435] gi|254234024|ref|ZP_04927349.1| alanine racemase alr [Mycobacterium tuberculosis C] gi|254366033|ref|ZP_04982078.1| alanine racemase alr [Mycobacterium tuberculosis str. Haarlem] gi|260188477|ref|ZP_05765951.1| alanine racemase [Mycobacterium tuberculosis CPHL_A] gi|260202499|ref|ZP_05769990.1| alanine racemase [Mycobacterium tuberculosis T46] gi|260206790|ref|ZP_05774281.1| alanine racemase [Mycobacterium tuberculosis K85] gi|289444919|ref|ZP_06434663.1| alanine racemase [Mycobacterium tuberculosis T46] gi|289449122|ref|ZP_06438866.1| alanine racemase alr [Mycobacterium tuberculosis CPHL_A] gi|289555698|ref|ZP_06444908.1| alanine racemase alr [Mycobacterium tuberculosis KZN 605] gi|289571648|ref|ZP_06451875.1| alanine racemase alr [Mycobacterium tuberculosis T17] gi|289576156|ref|ZP_06456383.1| alanine racemase alr [Mycobacterium tuberculosis K85] gi|289747252|ref|ZP_06506630.1| alanine racemase alr [Mycobacterium tuberculosis 02_1987] gi|289752142|ref|ZP_06511520.1| alanine racemase alr [Mycobacterium tuberculosis T92] gi|289755553|ref|ZP_06514931.1| alanine racemase [Mycobacterium tuberculosis EAS054] gi|289759583|ref|ZP_06518961.1| alanine racemase alr [Mycobacterium tuberculosis T85] gi|289763606|ref|ZP_06522984.1| alanine racemase alr [Mycobacterium tuberculosis GM 1503] gi|294995803|ref|ZP_06801494.1| alanine racemase [Mycobacterium tuberculosis 210] gi|297636085|ref|ZP_06953865.1| alanine racemase [Mycobacterium tuberculosis KZN 4207] gi|297733085|ref|ZP_06962203.1| alanine racemase [Mycobacterium tuberculosis KZN R506] gi|298526906|ref|ZP_07014315.1| D-alanine racemase [Mycobacterium tuberculosis 94_M4241A] gi|313660416|ref|ZP_07817296.1| alanine racemase [Mycobacterium tuberculosis KZN V2475] gi|1449364|emb|CAB01033.1| ALANINE RACEMASE ALR [Mycobacterium tuberculosis H37Rv] gi|13883361|gb|AAK47870.1| D-alanine racemase [Mycobacterium tuberculosis CDC1551] gi|31620201|emb|CAD95644.1| PROBABLE ALANINE RACEMASE ALR [Mycobacterium bovis AF2122/97] gi|121494996|emb|CAL73482.1| Probable alanine racemase alr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599553|gb|EAY58657.1| alanine racemase alr [Mycobacterium tuberculosis C] gi|134151546|gb|EBA43591.1| alanine racemase alr [Mycobacterium tuberculosis str. Haarlem] gi|148507439|gb|ABQ75248.1| alanine racemase [Mycobacterium tuberculosis H37Ra] gi|148723157|gb|ABR07782.1| alanine racemase alr [Mycobacterium tuberculosis F11] gi|224774959|dbj|BAH27765.1| putative alanine racemase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321973|gb|ACT26576.1| alanine racemase alr [Mycobacterium tuberculosis KZN 1435] gi|289417838|gb|EFD15078.1| alanine racemase [Mycobacterium tuberculosis T46] gi|289422080|gb|EFD19281.1| alanine racemase alr [Mycobacterium tuberculosis CPHL_A] gi|289440330|gb|EFD22823.1| alanine racemase alr [Mycobacterium tuberculosis KZN 605] gi|289540587|gb|EFD45165.1| alanine racemase alr [Mycobacterium tuberculosis K85] gi|289545402|gb|EFD49050.1| alanine racemase alr [Mycobacterium tuberculosis T17] gi|289687780|gb|EFD55268.1| alanine racemase alr [Mycobacterium tuberculosis 02_1987] gi|289692729|gb|EFD60158.1| alanine racemase alr [Mycobacterium tuberculosis T92] gi|289696140|gb|EFD63569.1| alanine racemase [Mycobacterium tuberculosis EAS054] gi|289711112|gb|EFD75128.1| alanine racemase alr [Mycobacterium tuberculosis GM 1503] gi|289715147|gb|EFD79159.1| alanine racemase alr [Mycobacterium tuberculosis T85] gi|298496700|gb|EFI31994.1| D-alanine racemase [Mycobacterium tuberculosis 94_M4241A] gi|323717910|gb|EGB27099.1| alanine racemase alr [Mycobacterium tuberculosis CDC1551A] gi|326905266|gb|EGE52199.1| alanine racemase alr [Mycobacterium tuberculosis W-148] gi|328460202|gb|AEB05625.1| alanine racemase alr [Mycobacterium tuberculosis KZN 4207] Length = 408 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + +G+A+ AVVK + YG G ++A AG + V +V Sbjct: 35 LAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATV 94 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ +SS+ Q + G + Sbjct: 95 DEALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATV 154 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + ++SH+ AD P +N VQ +R Sbjct: 155 TVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQR 214 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F ++ + A L++SS + P+ F L RPGI++YG + + Sbjct: 215 FTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPA 274 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ IGYADG +L G Sbjct: 275 MTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-------- 326 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALAS 350 + I G P +G+I MD M D+ + GD +FGP I D A Sbjct: 327 ---EVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLV 383 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 384 GTIHYEVVTSPRGRITRTY 402 >gi|193067831|ref|ZP_03048797.1| alanine racemase [Escherichia coli E110019] gi|192958806|gb|EDV89243.1| alanine racemase [Escherichia coli E110019] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPMISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|196036671|ref|ZP_03104064.1| alanine racemase [Bacillus cereus W] gi|195990740|gb|EDX54715.1| alanine racemase [Bacillus cereus W] Length = 391 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAATEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|67922161|ref|ZP_00515676.1| Alanine racemase [Crocosphaera watsonii WH 8501] gi|67856061|gb|EAM51305.1| Alanine racemase [Crocosphaera watsonii WH 8501] Length = 405 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 112/379 (29%), Positives = 166/379 (43%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL+AL +N + L S AVVK +AYG G +A + AG V Sbjct: 25 RQRAWVEIDLSALSHNVVQIKQLLSPKTALMAVVKADAYGHGAIAVAQTVLEAGANALAV 84 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 ++ EG++LR A I +L I+ +E I PQ L Sbjct: 85 ATLGEGIELREAGITAPILILGAINTPEEIAAIAHWNIEPTLCDPQQAIIFSQTLSQWEK 144 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++DTG +RLG+ + +F +L+ + SHLA ADDP +Q + Sbjct: 145 PLSVHLKLDTGMSRLGMPWHQGTEFASLVKKLPYLKLNSVYSHLATADDPDRTNMYLQHK 204 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQ 233 RF+T IS K A+S+ L+ P H+ L R G+ LYG + ++ Sbjct: 205 RFKTAISQLKAQGVKPPRLHFANSAATLIAPQLHYDLVRVGLGLYGLYPAPHLRSIVSLK 264 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +A+I I+ A VSYG Q R IAV IGYADG P LS Sbjct: 265 PVLQVKAKITQIKTIPANTGVSYGYQFVSDRPMKIAVVGIGYADGVPRQLSNRL------ 318 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + IKG +G ITMD M D++ ++VGD + + G D I + A Sbjct: 319 -----QVLIKGQRACQIGAITMDQLMLDVSHLRHLKVGDTVTLIGQDGNQEITANHWATM 373 Query: 350 SGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 374 LGTISWEILCGFKHRLPRI 392 >gi|331087586|ref|ZP_08336516.1| alanine racemase [Lachnospiraceae bacterium 3_1_46FAA] gi|330400457|gb|EGG80090.1| alanine racemase [Lachnospiraceae bacterium 3_1_46FAA] Length = 383 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 161/386 (41%), Gaps = 27/386 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + + +IDL A+ N M + AR AV+K + YG G IA + V Sbjct: 1 MDQHNRVCAQIDLDAIAYNMEQMKDQIGKEARLIAVIKTDGYGHGAVPIARMFETFSYVW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + V +EE V LR + I VL + P Q + + + + + S Sbjct: 61 GYAVACIEEAVSLRKEGIKKPILVLGCVFPDQYETMIKNEIRAAVYTKEMAEGMSDEAVR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + + +++DTG R+G + E+++ + + +H A AD+ Sbjct: 121 QGKNAYFHIKIDTGMGRIGFPVNSESVNLIEEISKLPNIHMEGLFTHFAKADEKEKSYTL 180 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q ERF + + +S+GI+ PN L R GIS YG Sbjct: 181 KQHERFLWMKEQLEKRNVDITYYDCDNSAGIIDFPNLKHDLARAGISTYGMYPSDEVQKS 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ ++ + I +++ AG +SYGG IA +GY DGYP +LS Sbjct: 241 NVHLKPALSLISHITFVKEVEAGTPISYGGTFVAPEKMKIATIPVGYGDGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G I+G I+G++ MD M D+TD D + + G +I ++ Sbjct: 298 --------KGSVLIRGKRAKIVGRVCMDQFMVDVTDIPGAAFMDRVVLIGKDGKDEITVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370 +++ SG NY+ + +G R + YT Sbjct: 350 ELSKLSGRFNYEFVCCLGKRIPRVYT 375 >gi|218903226|ref|YP_002451060.1| alanine racemase [Bacillus cereus AH820] gi|218535647|gb|ACK88045.1| alanine racemase [Bacillus cereus AH820] Length = 391 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + ++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAATEEAIQYGVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|218556610|ref|YP_002389524.1| alanine racemase [Escherichia coli IAI1] gi|218363379|emb|CAR01032.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli IAI1] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 170/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + I Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSIGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|47566849|ref|ZP_00237567.1| alanine racemase [Bacillus cereus G9241] gi|47556478|gb|EAL14811.1| alanine racemase [Bacillus cereus G9241] Length = 391 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEGNIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|228933402|ref|ZP_04096256.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229138804|ref|ZP_04267385.1| Alanine racemase [Bacillus cereus BDRD-ST26] gi|228644720|gb|EEL00971.1| Alanine racemase [Bacillus cereus BDRD-ST26] gi|228826266|gb|EEM72045.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 408 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|260858163|ref|YP_003232054.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O26:H11 str. 11368] gi|257756812|dbj|BAI28314.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O26:H11 str. 11368] gi|323155607|gb|EFZ41782.1| alanine racemase [Escherichia coli EPECa14] Length = 365 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|148265867|ref|YP_001232573.1| alanine racemase [Geobacter uraniireducens Rf4] gi|146399367|gb|ABQ28000.1| alanine racemase [Geobacter uraniireducens Rf4] Length = 384 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 105/383 (27%), Positives = 168/383 (43%), Gaps = 28/383 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL AL++N++ + + AVVK +AYG G I+ L GV F V Sbjct: 11 SRPTIAEIDLAALRHNYYQVKKAVPAGSGLLAVVKADAYGHGFMDISRELEALGVTAFGV 70 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 + EG++LR I +L GI+PGQEK N+ + S+ Q + Sbjct: 71 AFLAEGIQLRKSGIDRPILLLGGIYPGQEKKCVGFNISTAVFSLDQARVLDDVARKLYRK 130 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQ 178 L+VDTG RLG+ +EA F K +L I SH A AD+ + Q Sbjct: 131 AKIHLKVDTGMGRLGIRYEEAPAFFRELKKLKNLELEGIFSHFASADELDDEGSGYTARQ 190 Query: 179 LERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHP 231 E F ++ + +A+S+ L RPGI LYG + Sbjct: 191 TEIFAAVLQEGTRQGFSPTFVHIANSAAAFSRDFPFCNLARPGIVLYGALPSADFQGKID 250 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ ++R+ +++ G +SY + + +L+A +GYADGY L+ Sbjct: 251 VKPVMRLKSRVAMLKWVEPGTSISYARRYVAGKKTLVASVPVGYADGYCRALTN------ 304 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346 G+ ++G + G + MD M D+TD + VGD + + G D I +++ Sbjct: 305 -----KGEALVRGQRARVAGTVCMDWIMLDVTDIAGVAVGDEVTLLGCDNQGNCIHAEEL 359 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A SGT Y++ I R + Y Sbjct: 360 AAWSGTIAYEIFCGISKRVPRVY 382 >gi|325915922|ref|ZP_08178218.1| alanine racemase [Xanthomonas vesicatoria ATCC 35937] gi|325537889|gb|EGD09589.1| alanine racemase [Xanthomonas vesicatoria ATCC 35937] Length = 368 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 165/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQALIDLDALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + S PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEQDELRLIAEHDLWTVVSTPQQVRALAEFQSPRPLRI 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKLDSGMHRLGLSPEDFRAAWLRLHGLPQIASMVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 L + E S+ +S G+L P +RPG+ LYG + ++ V+T +R Sbjct: 179 LTAGGMRAETSIRNSPGLLGWPALRNDWSRPGLMLYGANPFPHDTELTTQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPML 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQADIGSGVQLWGDAPRVSPLATQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRVY 354 >gi|292493497|ref|YP_003528936.1| alanine racemase [Nitrosococcus halophilus Nc4] gi|291582092|gb|ADE16549.1| alanine racemase [Nitrosococcus halophilus Nc4] Length = 356 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F + IDL+AL++N + L +R AVVK + YG G ++IA L A F V Sbjct: 2 NFPQAIIDLSALRHNLQRVRELVPRSRVMAVVKADGYGHGLKRIAQVLAEAHA--FAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR + I +L GI +E + + ++ Sbjct: 60 LGEALVLRQAGYRGDIVLLEGIADKEELQLAAAYHLTLVVHEATQLDLLWQAPVNAPLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+VDTG +RLG + + + + + ++SHLA AD + ++QLE F Sbjct: 120 WLKVDTGMHRLGFPPERVAEAVTSLRRCPAVAAVVGLMSHLANADQAEDSLTAIQLETFE 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240 + G+ S+A+S+ ++ P HF RPG+ LYG + + ++ V+T + Sbjct: 180 RIT--VPGLWRSMANSAAVIACPQAHFDWVRPGLMLYGVSPFAHCTGAAVGLKPVMTLKT 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I I G+ + YG + VAAIGY DGYP G Sbjct: 238 RLIAIHHLHPGDSIGYGATWVCPEAMAVGVAAIGYGDGYPRHA-----------APGTPL 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G VP++G+++MDM D+ +VGD + ++G + ++++A + T Y+LL + Sbjct: 287 LVNGRPVPLVGRVSMDMVTLDLRSQPEAKVGDPVIVWGAGLPVEEIACHAATIPYELLCQ 346 Query: 361 IGTRYAKF 368 + R + Sbjct: 347 VTARVPRI 354 >gi|16131879|ref|NP_418477.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli str. K-12 substr. MG1655] gi|24115357|ref|NP_709867.1| alanine racemase [Shigella flexneri 2a str. 301] gi|30064642|ref|NP_838813.1| alanine racemase [Shigella flexneri 2a str. 2457T] gi|89110774|ref|AP_004554.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli str. K-12 substr. W3110] gi|91213579|ref|YP_543565.1| alanine racemase [Escherichia coli UTI89] gi|110807930|ref|YP_691450.1| alanine racemase [Shigella flexneri 5 str. 8401] gi|117626323|ref|YP_859646.1| alanine racemase [Escherichia coli APEC O1] gi|157163522|ref|YP_001460840.1| alanine racemase [Escherichia coli HS] gi|170021949|ref|YP_001726903.1| alanine racemase [Escherichia coli ATCC 8739] gi|170083510|ref|YP_001732830.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli str. K-12 substr. DH10B] gi|170680683|ref|YP_001746442.1| alanine racemase [Escherichia coli SMS-3-5] gi|188492399|ref|ZP_02999669.1| alanine racemase [Escherichia coli 53638] gi|191168796|ref|ZP_03030572.1| alanine racemase [Escherichia coli B7A] gi|194437323|ref|ZP_03069421.1| alanine racemase [Escherichia coli 101-1] gi|209921537|ref|YP_002295621.1| alanine racemase [Escherichia coli SE11] gi|215489388|ref|YP_002331819.1| alanine racemase [Escherichia coli O127:H6 str. E2348/69] gi|218561126|ref|YP_002394039.1| alanine racemase [Escherichia coli S88] gi|218697761|ref|YP_002405428.1| alanine racemase [Escherichia coli 55989] gi|218702717|ref|YP_002410346.1| alanine racemase [Escherichia coli IAI39] gi|237703613|ref|ZP_04534094.1| alanine racemase 1 [Escherichia sp. 3_2_53FAA] gi|238903162|ref|YP_002928958.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli BW2952] gi|253775319|ref|YP_003038150.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037050|ref|ZP_04871127.1| alanine racemase 1 [Escherichia sp. 1_1_43] gi|254163989|ref|YP_003047097.1| alanine racemase [Escherichia coli B str. REL606] gi|256024926|ref|ZP_05438791.1| alanine racemase [Escherichia sp. 4_1_40B] gi|260870812|ref|YP_003237214.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O111:H- str. 11128] gi|293476357|ref|ZP_06664765.1| alanine racemase [Escherichia coli B088] gi|300817971|ref|ZP_07098184.1| alanine racemase [Escherichia coli MS 107-1] gi|300823594|ref|ZP_07103722.1| alanine racemase [Escherichia coli MS 119-7] gi|300906364|ref|ZP_07124062.1| alanine racemase [Escherichia coli MS 84-1] gi|300917299|ref|ZP_07133972.1| alanine racemase [Escherichia coli MS 115-1] gi|300924316|ref|ZP_07140295.1| alanine racemase [Escherichia coli MS 182-1] gi|300929792|ref|ZP_07145244.1| alanine racemase [Escherichia coli MS 187-1] gi|300938190|ref|ZP_07152960.1| alanine racemase [Escherichia coli MS 21-1] gi|300946625|ref|ZP_07160884.1| alanine racemase [Escherichia coli MS 116-1] gi|300957537|ref|ZP_07169744.1| alanine racemase [Escherichia coli MS 175-1] gi|301019191|ref|ZP_07183389.1| alanine racemase [Escherichia coli MS 196-1] gi|301302732|ref|ZP_07208861.1| alanine racemase [Escherichia coli MS 124-1] gi|301645041|ref|ZP_07245004.1| alanine racemase [Escherichia coli MS 146-1] gi|306815836|ref|ZP_07449981.1| alanine racemase [Escherichia coli NC101] gi|307140743|ref|ZP_07500099.1| alanine racemase [Escherichia coli H736] gi|307312105|ref|ZP_07591742.1| alanine racemase [Escherichia coli W] gi|309795859|ref|ZP_07690273.1| alanine racemase [Escherichia coli MS 145-7] gi|312965646|ref|ZP_07779875.1| alanine racemase [Escherichia coli 2362-75] gi|312974153|ref|ZP_07788324.1| alanine racemase [Escherichia coli 1827-70] gi|331644794|ref|ZP_08345911.1| alanine racemase [Escherichia coli H736] gi|331670916|ref|ZP_08371750.1| alanine racemase [Escherichia coli TA271] gi|331680183|ref|ZP_08380842.1| alanine racemase [Escherichia coli H591] gi|331680983|ref|ZP_08381620.1| alanine racemase [Escherichia coli H299] gi|67462106|sp|P0A6B4|ALR1_ECOLI RecName: Full=Alanine racemase, biosynthetic gi|67462107|sp|P0A6B5|ALR1_SHIFL RecName: Full=Alanine racemase, biosynthetic gi|67462108|sp|P0A6B6|ALR1_SHIBO RecName: Full=Alanine racemase, biosynthetic gi|1790487|gb|AAC77023.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli str. K-12 substr. MG1655] gi|16610217|dbj|BAB71771.1| alanine racemase [Shigella boydii] gi|24054663|gb|AAN45574.1| alanine racemase 1 [Shigella flexneri 2a str. 301] gi|30042901|gb|AAP18624.1| alanine racemase 1 [Shigella flexneri 2a str. 2457T] gi|85676805|dbj|BAE78055.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli str. K12 substr. W3110] gi|91075153|gb|ABE10034.1| alanine racemase 1 [Escherichia coli UTI89] gi|110617478|gb|ABF06145.1| alanine racemase 1 [Shigella flexneri 5 str. 8401] gi|115515447|gb|ABJ03522.1| alanine racemase 1 [Escherichia coli APEC O1] gi|157069202|gb|ABV08457.1| alanine racemase [Escherichia coli HS] gi|169756877|gb|ACA79576.1| alanine racemase [Escherichia coli ATCC 8739] gi|169891345|gb|ACB05052.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli str. K-12 substr. DH10B] gi|170518401|gb|ACB16579.1| alanine racemase [Escherichia coli SMS-3-5] gi|188487598|gb|EDU62701.1| alanine racemase [Escherichia coli 53638] gi|190901174|gb|EDV60947.1| alanine racemase [Escherichia coli B7A] gi|194423879|gb|EDX39868.1| alanine racemase [Escherichia coli 101-1] gi|209914796|dbj|BAG79870.1| alanine racemase [Escherichia coli SE11] gi|215267460|emb|CAS11914.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O127:H6 str. E2348/69] gi|218354493|emb|CAV01345.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli 55989] gi|218367895|emb|CAR05690.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli S88] gi|218372703|emb|CAR20579.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli IAI39] gi|222035765|emb|CAP78510.1| alanine racemase, biosynthetic [Escherichia coli LF82] gi|226840156|gb|EEH72158.1| alanine racemase 1 [Escherichia sp. 1_1_43] gi|226901525|gb|EEH87784.1| alanine racemase 1 [Escherichia sp. 3_2_53FAA] gi|238859949|gb|ACR61947.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli BW2952] gi|242379581|emb|CAQ34402.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli BL21(DE3)] gi|253326363|gb|ACT30965.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975890|gb|ACT41561.1| alanine racemase [Escherichia coli B str. REL606] gi|253980046|gb|ACT45716.1| alanine racemase [Escherichia coli BL21(DE3)] gi|257767168|dbj|BAI38663.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O111:H- str. 11128] gi|260451118|gb|ACX41540.1| alanine racemase [Escherichia coli DH1] gi|281603462|gb|ADA76446.1| Alanine racemase, biosynthetic [Shigella flexneri 2002017] gi|291320810|gb|EFE60252.1| alanine racemase [Escherichia coli B088] gi|299882348|gb|EFI90559.1| alanine racemase [Escherichia coli MS 196-1] gi|300315711|gb|EFJ65495.1| alanine racemase [Escherichia coli MS 175-1] gi|300401812|gb|EFJ85350.1| alanine racemase [Escherichia coli MS 84-1] gi|300415443|gb|EFJ98753.1| alanine racemase [Escherichia coli MS 115-1] gi|300419481|gb|EFK02792.1| alanine racemase [Escherichia coli MS 182-1] gi|300453724|gb|EFK17344.1| alanine racemase [Escherichia coli MS 116-1] gi|300456848|gb|EFK20341.1| alanine racemase [Escherichia coli MS 21-1] gi|300462298|gb|EFK25791.1| alanine racemase [Escherichia coli MS 187-1] gi|300523926|gb|EFK44995.1| alanine racemase [Escherichia coli MS 119-7] gi|300529381|gb|EFK50443.1| alanine racemase [Escherichia coli MS 107-1] gi|300841952|gb|EFK69712.1| alanine racemase [Escherichia coli MS 124-1] gi|301076663|gb|EFK91469.1| alanine racemase [Escherichia coli MS 146-1] gi|305850811|gb|EFM51267.1| alanine racemase [Escherichia coli NC101] gi|306907912|gb|EFN38413.1| alanine racemase [Escherichia coli W] gi|307629105|gb|ADN73409.1| alanine racemase [Escherichia coli UM146] gi|308120520|gb|EFO57782.1| alanine racemase [Escherichia coli MS 145-7] gi|309704520|emb|CBJ03869.1| alanine racemase [Escherichia coli ETEC H10407] gi|310331687|gb|EFP98943.1| alanine racemase [Escherichia coli 1827-70] gi|312289620|gb|EFR17511.1| alanine racemase [Escherichia coli 2362-75] gi|312948630|gb|ADR29457.1| alanine racemase [Escherichia coli O83:H1 str. NRG 857C] gi|313648749|gb|EFS13189.1| alanine racemase [Shigella flexneri 2a str. 2457T] gi|315063377|gb|ADT77704.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli W] gi|315138607|dbj|BAJ45766.1| alanine racemase [Escherichia coli DH1] gi|315254725|gb|EFU34693.1| alanine racemase [Escherichia coli MS 85-1] gi|315297524|gb|EFU56803.1| alanine racemase [Escherichia coli MS 16-3] gi|315617421|gb|EFU98027.1| alanine racemase [Escherichia coli 3431] gi|320193412|gb|EFW68049.1| Alanine racemase, biosynthetic [Escherichia coli WV_060327] gi|320200816|gb|EFW75402.1| Alanine racemase, biosynthetic [Escherichia coli EC4100B] gi|323171196|gb|EFZ56844.1| alanine racemase [Escherichia coli LT-68] gi|323175939|gb|EFZ61531.1| alanine racemase [Escherichia coli 1180] gi|323182156|gb|EFZ67566.1| alanine racemase [Escherichia coli 1357] gi|323380559|gb|ADX52827.1| alanine racemase [Escherichia coli KO11] gi|323935542|gb|EGB31873.1| alanine racemase [Escherichia coli E1520] gi|323940236|gb|EGB36429.1| alanine racemase [Escherichia coli E482] gi|323946186|gb|EGB42220.1| alanine racemase [Escherichia coli H120] gi|323950400|gb|EGB46281.1| alanine racemase [Escherichia coli H252] gi|323954482|gb|EGB50266.1| alanine racemase [Escherichia coli H263] gi|323960459|gb|EGB56092.1| alanine racemase [Escherichia coli H489] gi|323969813|gb|EGB65094.1| alanine racemase [Escherichia coli TA007] gi|324007777|gb|EGB76996.1| alanine racemase [Escherichia coli MS 57-2] gi|324017104|gb|EGB86323.1| alanine racemase [Escherichia coli MS 117-3] gi|324118625|gb|EGC12517.1| alanine racemase [Escherichia coli E1167] gi|331035769|gb|EGI08007.1| alanine racemase [Escherichia coli H736] gi|331061830|gb|EGI33755.1| alanine racemase [Escherichia coli TA271] gi|331071646|gb|EGI42982.1| alanine racemase [Escherichia coli H591] gi|331081204|gb|EGI52365.1| alanine racemase [Escherichia coli H299] gi|332346052|gb|AEE59386.1| alanine racemase [Escherichia coli UMNK88] gi|332751997|gb|EGJ82390.1| alanine racemase [Shigella flexneri 4343-70] gi|332752167|gb|EGJ82559.1| alanine racemase [Shigella flexneri K-671] gi|332753294|gb|EGJ83675.1| alanine racemase [Shigella flexneri 2747-71] gi|332764759|gb|EGJ94988.1| alanine racemase [Shigella flexneri 2930-71] gi|332998121|gb|EGK17725.1| alanine racemase [Shigella flexneri VA-6] gi|332999051|gb|EGK18640.1| alanine racemase [Shigella flexneri K-272] gi|332999100|gb|EGK18687.1| alanine racemase [Shigella flexneri K-218] gi|333014184|gb|EGK33540.1| alanine racemase [Shigella flexneri K-304] gi|333014415|gb|EGK33766.1| alanine racemase [Shigella flexneri K-227] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|311281403|ref|YP_003943634.1| alanine racemase [Enterobacter cloacae SCF1] gi|308750598|gb|ADO50350.1| alanine racemase [Enterobacter cloacae SCF1] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 170/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + + Sbjct: 62 EALRLREGGITQPILLLEGFFNAGDLPVISAQRLHTAVHNLEQLEALEQATLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S + + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCQNVRQPVNIVSHFARADEPECGATERQLDVFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P HF RPGI LYG + +Q V++ + Sbjct: 182 CDGKPGMR-SIAASGGILLWPQSHFDWVRPGIILYGVSPLEGKPWGPDFGLQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG + RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWESARDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ GD + ++G + ++ +A S + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDRAGDPVVLWGEGLPVERIAELSKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|15804645|ref|NP_290686.1| alanine racemase [Escherichia coli O157:H7 EDL933] gi|15834289|ref|NP_313062.1| alanine racemase [Escherichia coli O157:H7 str. Sakai] gi|168748102|ref|ZP_02773124.1| alanine racemase [Escherichia coli O157:H7 str. EC4113] gi|168755220|ref|ZP_02780227.1| alanine racemase [Escherichia coli O157:H7 str. EC4401] gi|168760899|ref|ZP_02785906.1| alanine racemase [Escherichia coli O157:H7 str. EC4501] gi|168766310|ref|ZP_02791317.1| alanine racemase [Escherichia coli O157:H7 str. EC4486] gi|168774408|ref|ZP_02799415.1| alanine racemase [Escherichia coli O157:H7 str. EC4196] gi|168780463|ref|ZP_02805470.1| alanine racemase [Escherichia coli O157:H7 str. EC4076] gi|168784666|ref|ZP_02809673.1| alanine racemase [Escherichia coli O157:H7 str. EC869] gi|168798287|ref|ZP_02823294.1| alanine racemase [Escherichia coli O157:H7 str. EC508] gi|195935836|ref|ZP_03081218.1| alanine racemase [Escherichia coli O157:H7 str. EC4024] gi|208806109|ref|ZP_03248446.1| alanine racemase [Escherichia coli O157:H7 str. EC4206] gi|208812590|ref|ZP_03253919.1| alanine racemase [Escherichia coli O157:H7 str. EC4045] gi|208819299|ref|ZP_03259619.1| alanine racemase [Escherichia coli O157:H7 str. EC4042] gi|209397944|ref|YP_002273593.1| alanine racemase [Escherichia coli O157:H7 str. EC4115] gi|217325461|ref|ZP_03441545.1| alanine racemase [Escherichia coli O157:H7 str. TW14588] gi|254796072|ref|YP_003080909.1| alanine racemase [Escherichia coli O157:H7 str. TW14359] gi|261225171|ref|ZP_05939452.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O157:H7 str. FRIK2000] gi|261255577|ref|ZP_05948110.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O157:H7 str. FRIK966] gi|291285469|ref|YP_003502287.1| Alanine racemase, biosynthetic [Escherichia coli O55:H7 str. CB9615] gi|20137342|sp|Q8X5V2|ALR1_ECO57 RecName: Full=Alanine racemase, biosynthetic gi|12519004|gb|AAG59251.1|AE005638_5 alanine racemase 1 [Escherichia coli O157:H7 str. EDL933] gi|13364512|dbj|BAB38458.1| alanine racemase 1 [Escherichia coli O157:H7 str. Sakai] gi|187769867|gb|EDU33711.1| alanine racemase [Escherichia coli O157:H7 str. EC4196] gi|188017506|gb|EDU55628.1| alanine racemase [Escherichia coli O157:H7 str. EC4113] gi|189001846|gb|EDU70832.1| alanine racemase [Escherichia coli O157:H7 str. EC4076] gi|189357442|gb|EDU75861.1| alanine racemase [Escherichia coli O157:H7 str. EC4401] gi|189364060|gb|EDU82479.1| alanine racemase [Escherichia coli O157:H7 str. EC4486] gi|189368602|gb|EDU87018.1| alanine racemase [Escherichia coli O157:H7 str. EC4501] gi|189374890|gb|EDU93306.1| alanine racemase [Escherichia coli O157:H7 str. EC869] gi|189379189|gb|EDU97605.1| alanine racemase [Escherichia coli O157:H7 str. EC508] gi|208725910|gb|EDZ75511.1| alanine racemase [Escherichia coli O157:H7 str. EC4206] gi|208733867|gb|EDZ82554.1| alanine racemase [Escherichia coli O157:H7 str. EC4045] gi|208739422|gb|EDZ87104.1| alanine racemase [Escherichia coli O157:H7 str. EC4042] gi|209159344|gb|ACI36777.1| alanine racemase [Escherichia coli O157:H7 str. EC4115] gi|209751260|gb|ACI73937.1| alanine racemase 1 [Escherichia coli] gi|209751262|gb|ACI73938.1| alanine racemase 1 [Escherichia coli] gi|209751264|gb|ACI73939.1| alanine racemase 1 [Escherichia coli] gi|209751266|gb|ACI73940.1| alanine racemase 1 [Escherichia coli] gi|217321682|gb|EEC30106.1| alanine racemase [Escherichia coli O157:H7 str. TW14588] gi|254595472|gb|ACT74833.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O157:H7 str. TW14359] gi|290765342|gb|ADD59303.1| Alanine racemase, biosynthetic [Escherichia coli O55:H7 str. CB9615] gi|320190822|gb|EFW65472.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. EC1212] gi|320638809|gb|EFX08455.1| alanine racemase [Escherichia coli O157:H7 str. G5101] gi|320654892|gb|EFX22853.1| alanine racemase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660740|gb|EFX28197.1| alanine racemase [Escherichia coli O55:H7 str. USDA 5905] gi|320665669|gb|EFX32706.1| alanine racemase [Escherichia coli O157:H7 str. LSU-61] gi|326341902|gb|EGD65685.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. 1125] gi|326346524|gb|EGD70258.1| Alanine racemase, biosynthetic [Escherichia coli O157:H7 str. 1044] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|238754673|ref|ZP_04616026.1| Alanine racemase 1 [Yersinia ruckeri ATCC 29473] gi|238707132|gb|EEP99496.1| Alanine racemase 1 [Yersinia ruckeri ATCC 29473] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 112/367 (30%), Positives = 177/367 (48%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + L+ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRLAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFSAEDLPVLVVNHIETAVHSIEQLEALEQADLPYPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ EA F S + Q I+SH + AD+P Q+E F T Sbjct: 122 KLDTGMHRLGVRPDEAEAFYQRLSACHNVVQPINIMSHFSQADEPEVSATRQQIECFDTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242 ++ G + S+A+S GILL P+ H RPGI LYG + K +Q +T ++ + Sbjct: 182 VADKPG-KQSIAASGGILLWPDSHRDWVRPGIVLYGVSPIEQKNGADFGLQPGMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK AGE V YGG RD+ + V A+GY DGYP + G ++ Sbjct: 241 IAVRKHKAGEPVGYGGTWVSQRDTRLGVVAMGYGDGYPRSA-----------PSGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI+G+++MDM D+ S VGD ++++G D+ ++ VA+A+G + Y+L+ ++ Sbjct: 290 NGREVPIVGRVSMDMISVDLGPDSSDRVGDEVELWGADLPVEKVAIATGISAYELITKLT 349 Query: 363 TRYAKFY 369 R + Y Sbjct: 350 PRVSMEY 356 >gi|29654196|ref|NP_819888.1| alanine racemase, biosynthetic [Coxiella burnetii RSA 493] gi|165918546|ref|ZP_02218632.1| alanine racemase [Coxiella burnetii RSA 334] gi|81839075|sp|Q83D71|ALR_COXBU RecName: Full=Alanine racemase gi|29541462|gb|AAO90402.1| alanine racemase, biosynthetic [Coxiella burnetii RSA 493] gi|165917792|gb|EDR36396.1| alanine racemase [Coxiella burnetii RSA 334] Length = 364 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 172/370 (46%), Gaps = 23/370 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I++TALK+N + AL+ + A++K N YG G ++A AL +A F V Sbjct: 2 NRATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR ++ I V+ G + E F + + + + + S Sbjct: 60 IDEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEKTNLTSSLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG NRLG S++++ + + + + +++HLA AD+ + +Q++RF Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--------INKSHPMQTV 235 ++ G S+ +S+G PN RPGI LYG + + V Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A+II I+ + V YG D IA+ +IGY DGYP Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G + P++G+++MDM D+ + +VGD + ++G + ++ +A +GT Y Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347 Query: 356 DLLVRIGTRY 365 +LL +I R Sbjct: 348 ELLCKITQRV 357 >gi|301053620|ref|YP_003791831.1| alanine racemase [Bacillus anthracis CI] gi|300375789|gb|ADK04693.1| alanine racemase [Bacillus cereus biovar anthracis str. CI] Length = 408 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|212212678|ref|YP_002303614.1| alanine racemase, biosynthetic [Coxiella burnetii CbuG_Q212] gi|226711037|sp|B6J0J1|ALR_COXB2 RecName: Full=Alanine racemase gi|212011088|gb|ACJ18469.1| alanine racemase, biosynthetic [Coxiella burnetii CbuG_Q212] Length = 364 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 172/370 (46%), Gaps = 23/370 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I++TALK+N + AL+ + A++K N YG G ++A AL +A F V Sbjct: 2 NRATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR ++ I V+ G + E F + + + K + S Sbjct: 60 IDEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLKKTNLTSSLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG NRLG S++++ + + + + +++HLA AD+ + +Q++RF Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--------INKSHPMQTV 235 ++ G S+ +S+G PN RPGI LYG + + V Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A+II I+ + V YG D IA+ +IGY DGYP Sbjct: 239 MTLSAKIIAIKNRRKNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G + P++G+++MDM D+ + +VGD + ++G + ++ +A +GT Y Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347 Query: 356 DLLVRIGTRY 365 +LL +I R Sbjct: 348 ELLCKITQRV 357 >gi|237807335|ref|YP_002891775.1| alanine racemase [Tolumonas auensis DSM 9187] gi|237499596|gb|ACQ92189.1| alanine racemase [Tolumonas auensis DSM 9187] Length = 358 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 170/365 (46%), Gaps = 18/365 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R++I+L AL++N+ + S ++ AV+K NAYG +A L F V +E Sbjct: 5 ARIQINLKALQHNFEKIKKCSPKSKIIAVIKGNAYGHDAVLVAKTLQQ--ADAFAVARIE 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E V LR + I +L G ++ +I + S L Sbjct: 63 EAVVLRQAGIERPIVLLEGCFCAKDLLIAAHYQFQPVIHHAGQLADILSASLPTPVKVWL 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +R+G+ ++ + N + +SH AD+ S+ QL F Sbjct: 123 KIDTGMHRIGIMPEQVAHYVTQLSNSANVSGHVGFVSHFYRADELSASTTHEQLACFIQA 182 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242 + Y G E SL++S+G+L + HF RPGI+LYG + + +Q V+T ++ + Sbjct: 183 TAPYPG-EKSLSNSAGVLYWSDAHFDWVRPGIALYGISPRADSTGIAEGLQPVMTLKSTL 241 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE + YGG +D+ I V A+GY DGYP G + Sbjct: 242 ISVREHKAGESIGYGGHWIADQDTRIGVIAMGYGDGYPRMA-----------PAGTPVLV 290 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V + G+++MDM D+ ++GD + ++G + ++VA GT Y+L+++I Sbjct: 291 NGRKVALAGRVSMDMMTVDLGPESQDQIGDEVTLWGNGLPAEEVARHIGTIAYELVIKIT 350 Query: 363 TRYAK 367 +R + Sbjct: 351 SRVQR 355 >gi|331675585|ref|ZP_08376332.1| alanine racemase [Escherichia coli TA280] gi|331067193|gb|EGI38601.1| alanine racemase [Escherichia coli TA280] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + + + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCQNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|322382485|ref|ZP_08056373.1| alanine racemase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153547|gb|EFX45943.1| alanine racemase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 395 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 29/383 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++ L AL N + ++ R AVVK +AYG G IA +G V Sbjct: 6 RPTWVEVSLDALSGNLQAFRQALPDSIRIMAVVKADAYGHGAASIAREAIASGADHLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCG 119 ++E ++LR A I VL P ++ N+ + + L + + Sbjct: 66 FLDEALQLREAGISAPILVLGYTAPDGLEMALKNNITLTVFNEEMLRGMELLQGQAEALD 125 Query: 120 VSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++VD+G +R+G +EA+ + L + +H ACAD+ +Q Sbjct: 126 KRLRVHVKVDSGMHRIGLYKEEEAVSYLKQIARMPHICLEGLFTHYACADEADKAYTRLQ 185 Query: 179 LERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230 E+F ++ K + + +S+ + P + + R GI++YG H Sbjct: 186 YEKFSRVVHEVKRLGIDIPYIHAGNSAAAIDTPELVYNMARLGIAMYGLYPSEKVDHTII 245 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V++ + R+I + G +SYG + I IGYADG+ LS Sbjct: 246 KLEPVMSLKTRMIHDKWLSEGSGISYGTIYHTKGEERIGTLPIGYADGFSRMLS------ 299 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 I+G VPI+G+I MD M +IT E GD + + G I +++ Sbjct: 300 -----TKANALIRGKRVPIVGRICMDQCMLNITGVPEAEAGDEVVLIGRQGDEVIPAEEI 354 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A GT NY++ + R + Y Sbjct: 355 AGHLGTINYEVTCMMAHRIPRVY 377 >gi|331650063|ref|ZP_08351136.1| alanine racemase [Escherichia coli M605] gi|330908377|gb|EGH36896.1| alanine racemase, biosynthetic [Escherichia coli AA86] gi|331041008|gb|EGI13165.1| alanine racemase [Escherichia coli M605] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + + + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEANLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|229196342|ref|ZP_04323090.1| Alanine racemase [Bacillus cereus m1293] gi|228587196|gb|EEK45266.1| Alanine racemase [Bacillus cereus m1293] Length = 408 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVASAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVIGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|209751258|gb|ACI73936.1| alanine racemase 1 [Escherichia coli] gi|320644177|gb|EFX13242.1| alanine racemase [Escherichia coli O157:H- str. 493-89] gi|320649496|gb|EFX18020.1| alanine racemase [Escherichia coli O157:H- str. H 2687] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRPTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|74314547|ref|YP_312966.1| alanine racemase [Shigella sonnei Ss046] gi|20137404|sp|Q93HP9|ALR1_SHISO RecName: Full=Alanine racemase, biosynthetic gi|16610221|dbj|BAB71773.1| alanine racemase [Shigella sonnei] gi|73858024|gb|AAZ90731.1| alanine racemase 1 [Shigella sonnei Ss046] gi|323164550|gb|EFZ50351.1| alanine racemase [Shigella sonnei 53G] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + I Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSIGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|294493177|gb|ADE91933.1| alanine racemase [Escherichia coli IHE3034] Length = 359 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASPDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|331091068|ref|ZP_08339910.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA] gi|330405290|gb|EGG84826.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA] Length = 388 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + + KIDL A+ N M G+ + AV+K + YG G ++A L + Sbjct: 1 MKTYSRVYAKIDLDAVTYNMEQMKQRIDGDTKIMAVIKSDGYGHGAIQVAEVLEKYDYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117 F V +++E V LR Q I VL I P Q + D ++ + + S + Sbjct: 61 GFAVATLDEAVVLRTEGIQKPILVLGCIFPDQYLEMLDNDIRMNVYTEEMAKEISYMARR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + +++DTG RLG ++ E++D + + +H A AD+ Sbjct: 121 EGKTAYLHIKLDTGMARLGFAVNNESVDAITRISKLPNVNMEGVFTHFAKADETDKTFTK 180 Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+ +F ++ + A+S+ I+ + F + R GIS YG + Sbjct: 181 NQISQFVSMTEKLRERGVTFPYEHCANSAAIIDVEDARFDIVRAGISTYGLYPSEEVNQN 240 Query: 232 MQT---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ + +++ G VSYGG + IA +GY DGYP +LSG Sbjct: 241 AVHLKPALALKSHVAFVKEIEEGTPVSYGGTFVAEKKMKIATIPVGYGDGYPRSLSG--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G ILG+I MD M D+TD + GD + + G D I ++ Sbjct: 298 --------KGYVLIRGKKANILGRICMDQFMVDVTDIEGVSFGDKVTLIGRDGNEAISVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ + +G R + Y Sbjct: 350 KLSELSGRFNYEFICALGKRIPRVY 374 >gi|193885285|pdb|3B8W|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221p gi|193885286|pdb|3B8W|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221p gi|193885287|pdb|3B8W|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221p gi|193885288|pdb|3B8W|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221p Length = 379 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 24 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 81 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 82 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 141 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 142 XLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 202 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLPDRSTGADFGCQPVMSLTSS 260 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 309 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 370 TSRVAMKY 377 >gi|283836658|ref|ZP_06356399.1| alanine racemase [Citrobacter youngae ATCC 29220] gi|291067398|gb|EFE05507.1| alanine racemase [Citrobacter youngae ATCC 29220] Length = 359 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G + + + + + Sbjct: 62 EALRLRAGGITQPVLLLEGFFDATDLPTISAQRLHTAVHNLEQLEALEAAKLAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + + + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDIFNRF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPG+ LYG + I Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG + RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|193885281|pdb|3B8V|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221k gi|193885282|pdb|3B8V|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221k gi|193885283|pdb|3B8V|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221k gi|193885284|pdb|3B8V|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221k Length = 379 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 24 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 81 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 82 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 141 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 142 XLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 202 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLKDRSTGADFGCQPVMSLTSS 260 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 309 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 370 TSRVAMKY 377 >gi|157157084|ref|YP_001465553.1| alanine racemase [Escherichia coli E24377A] gi|157079114|gb|ABV18822.1| alanine racemase [Escherichia coli E24377A] Length = 359 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKSG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|293417557|ref|ZP_06660179.1| alanine racemase [Escherichia coli B185] gi|291430275|gb|EFF03273.1| alanine racemase [Escherichia coli B185] Length = 359 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPRCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|110633340|ref|YP_673548.1| alanine racemase [Mesorhizobium sp. BNC1] gi|110284324|gb|ABG62383.1| alanine racemase [Chelativorans sp. BNC1] Length = 389 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 219/366 (59%), Gaps = 5/366 (1%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 RL +DL+AL N+ + S A AAV+K +AYGLG + + AL+ AG + FFV +E Sbjct: 20 RLTVDLSALVANYQLLARRSAPAGAAAVLKADAYGLGLKPVGSALWAAGCRRFFVALPQE 79 Query: 68 GVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125 G++LR P+A IFVL G+ + LIPV++S ++ + + S P A Sbjct: 80 GIELRAILPEAEIFVLTGLFAVESAAAYREARLIPVLNSQSDISIWEAHGWNDQRSRPCA 139 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + VDTG NRLGL+ + A + L++SHLACAD P +N QLE F+ + Sbjct: 140 VHVDTGMNRLGLTPERARSLAEENALTGALTPILLMSHLACADTPDHPLNRRQLELFQAV 199 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + + E+SL +S+GI LG ++ LTRPGI+LYGG ++PM+ V T EAR++ + Sbjct: 200 RTLFPQSESSLCNSAGIFLGSDFLCDLTRPGIALYGGAPVKGIANPMRAVATVEARVVQV 259 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AGE VSYG RDS+IAV + GYADGY L SG +V +GFI G Sbjct: 260 RHVRAGETVSYGATPLA-RDSVIAVCSAGYADGYHLAGSGDRVPLRRAVRKAAEGFIHGR 318 Query: 306 MVPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 VP++G++TMD+T+FD+T+ I GD+I++FGP++ +D+VA A+GT Y+LL +G Sbjct: 319 RVPVVGRVTMDLTLFDVTEVGMDVIAPGDHIELFGPNMPIDEVAEAAGTIAYELLTSLGR 378 Query: 364 RYAKFY 369 RY + Y Sbjct: 379 RYYREY 384 >gi|324326142|gb|ADY21402.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 408 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEDAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|228985202|ref|ZP_04145367.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774497|gb|EEM22898.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 408 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E ++LR I +L + +++ + L +++ + Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANSLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|313112921|ref|ZP_07798567.1| alanine racemase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624826|gb|EFQ08135.1| alanine racemase [Faecalibacterium cf. prausnitzii KLE1255] Length = 400 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 160/394 (40%), Gaps = 35/394 (8%) Query: 1 MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + F + +IDL AL++N+ ++ A +G+ AVVK ++YG G + A G Sbjct: 1 MKTQPFEKHVWAEIDLDALRHNFRAVKARAGDLPLCAVVKADSYGHGAVQCARVFAQEGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 V+ + E V+LR I +L + P + + ++ S Q S Sbjct: 61 AWLAVSCLTEAVQLRQDGQTLPILILGHVQPEYAQTLIHEDITVACYSTEQAQNLSAAAV 120 Query: 117 SCGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 G L+ DTG R+G A+ +++ + H + ADD + Sbjct: 121 KAGGRVKIHLKADTGMGRIGFALRTDFDAAIREMLAVCELPGLEMTGLFQHFSVADDTAE 180 Query: 173 H---VNSVQLERF-----RTLISHYKGIEASLASSSGILLGPNYH------FQLTRPGIS 218 + Q F + + +S+G++L P++ + RPGI Sbjct: 181 ENVAYTAEQHALFVRAFHALKAAGREPQTVHCDNSAGVMLHPDWPEGLARERCMARPGII 240 Query: 219 LYGGTDKINKSHPMQTV-VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 LYG +T + + ++++ G+ SYG + + +L+A GYAD Sbjct: 241 LYGYDPSDEVRFGQFRPVMTLKTVVSMVKEMQPGQSASYGRRFTADKPTLVATLCTGYAD 300 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP LS G I G P+LG++ MD M D+T I GD ++ Sbjct: 301 GYPRQLS----------CGKGIVEIHGKACPVLGRVCMDQMMVDVTGIPDIHEGDEAILW 350 Query: 338 GPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369 G + + +A + T +Y++L + R + Y Sbjct: 351 GGSVSDTAETIARKTDTISYEVLCGVSRRVPRVY 384 >gi|193885202|pdb|2RJG|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase From Escherichia Coli gi|193885203|pdb|2RJG|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase From Escherichia Coli gi|193885204|pdb|2RJG|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase From Escherichia Coli gi|193885205|pdb|2RJG|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase From Escherichia Coli gi|193885206|pdb|2RJH|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase In D- Cycloserine-Bound Form From Escherichia Coli gi|193885207|pdb|2RJH|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase In D- Cycloserine-Bound Form From Escherichia Coli gi|193885208|pdb|2RJH|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase In D- Cycloserine-Bound Form From Escherichia Coli gi|193885209|pdb|2RJH|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase In D- Cycloserine-Bound Form From Escherichia Coli Length = 379 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 24 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 81 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 82 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 141 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 142 XLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 202 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 260 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 309 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 370 TSRVAMKY 377 >gi|75676204|ref|YP_318625.1| alanine racemase region [Nitrobacter winogradskyi Nb-255] gi|74421074|gb|ABA05273.1| alanine racemase region [Nitrobacter winogradskyi Nb-255] Length = 395 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 182/365 (49%), Gaps = 11/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + + A A V+K +AYG G +A AL AG + FFV +++E Sbjct: 29 LTVDLDAIVANWRKLEKTAVPAECAGVIKADAYGCGARPVARALSAAGCRTFFVATLDEA 88 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R A I+VL G N PVI + +L + G + A+ Sbjct: 89 RVVRAAASTADIYVLDGFFQNCGDAFATINCRPVIGDLNELAEWDVFCRRTGWAGGAAIH 148 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL+L EA N ++L++SHLACA+ +N+ Q+ FR + Sbjct: 149 IDTGMNRLGLTLDEAQGIL-PRINAGDHGVTLVMSHLACAESLHHPLNASQVAAFREIAR 207 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASLA+SSGI LG Y F L RPG +LYG ++PMQ V+ +ARII R Sbjct: 208 QFSGVPASLANSSGIFLGAQYQFDLVRPGAALYGVNPTPEAANPMQPVIELKARIIQTRS 267 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R + +AV + GYADGY D G + + G Sbjct: 268 IDRGESVGYGATWTARRPTRLAVVSAGYADGYFRAGGSNDGTR------GAEVVVAGTRC 321 Query: 308 PILGKITMDMTMFDITDSL---SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P+ G+I+MD+ DITD + G + G I +D++A GT Y++L +G R Sbjct: 322 PVAGRISMDLLAVDITDLPAHAGVRRGHLATLIGEGITVDELAHHFGTIGYEVLTSLGGR 381 Query: 365 YAKFY 369 Y + Y Sbjct: 382 YHRIY 386 >gi|75765474|pdb|1XFC|A Chain A, The 1.9 A Crystal Structure Of Alanine Racemase From Mycobacterium Tuberculosis Contains A Conserved Entryway Into The Active Site gi|75765475|pdb|1XFC|B Chain B, The 1.9 A Crystal Structure Of Alanine Racemase From Mycobacterium Tuberculosis Contains A Conserved Entryway Into The Active Site gi|5759222|gb|AAD51033.1|AF172731_1 alanine racemase [Mycobacterium tuberculosis] Length = 384 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + +G+A+ AVVK + YG G ++A AG + V +V Sbjct: 11 LAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATV 70 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ +SS+ Q + G + Sbjct: 71 DEALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATV 130 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + ++SH+ AD P +N VQ +R Sbjct: 131 TVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQR 190 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F ++ + A L++SS + P+ F L RPGI++YG + + Sbjct: 191 FTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPA 250 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ IGYADG +L G Sbjct: 251 MTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-------- 302 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALAS 350 + I G P +G+I MD M D+ + GD +FGP I D A Sbjct: 303 ---EVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLV 359 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 360 GTIHYEVVTSPRGRITRTY 378 >gi|161829951|ref|YP_001596838.1| alanine racemase [Coxiella burnetii RSA 331] gi|189027533|sp|A9ND48|ALR_COXBR RecName: Full=Alanine racemase gi|161761818|gb|ABX77460.1| alanine racemase [Coxiella burnetii RSA 331] Length = 364 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 173/370 (46%), Gaps = 23/370 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I++TALK+N + AL+ + A++K N YG G ++A AL +A F V Sbjct: 2 NRATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR ++ I V+ G + E F + + + + + S Sbjct: 60 IDEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEKTNLTSSLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG NRLG S++++ + + + + +++HLA AD+ + +Q++RF Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--------INKSHPMQTV 235 ++ G S+ +S+G PN RPGI LYG + + V Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A+II I+ + V YG + D IA+ +IGY DGYP Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCSEDMPIAIVSIGYGDGYPRHA-----------P 287 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G + P++G+++MDM D+ + +VGD + ++G + ++ +A +GT Y Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347 Query: 356 DLLVRIGTRY 365 +LL +I R Sbjct: 348 ELLCKITQRV 357 >gi|289668321|ref|ZP_06489396.1| alanine racemase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 366 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 166/368 (45%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQALIDLEALRHNYRLAKQL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + ++ V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFRQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ GE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRELPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGKVCPLIGRVSMDMLTVDLTDHPHADIGTPVQLWGDAPQVSPLAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRVY 354 >gi|152987893|ref|YP_001351392.1| alanine racemase [Pseudomonas aeruginosa PA7] gi|150963051|gb|ABR85076.1| alanine racemase [Pseudomonas aeruginosa PA7] Length = 368 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 161/369 (43%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +G AR AV+K +AYG G + A AL F V Sbjct: 13 RPARALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALAGE-ADGFAVAC 70 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR + I +L G E + + + + S Sbjct: 71 IEEALELRAAGIREPILLLEGFFEAAELELIVAHDFWCVVHAAWQLEAIERASLARLLTV 130 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G ++ +++SH + AD+ QL F Sbjct: 131 WLKMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTDEQLAAFAA 190 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 +G E SL +S +L P RPGI LYG T ++ V+T E++ Sbjct: 191 ASQGLEG-EISLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESK 249 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG + R I V A+GYADGYP G F Sbjct: 250 VISVRELPAGEPVGYGARYSTERSQRIGVVAMGYADGYPRHA-----------PDGTLVF 298 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 299 IDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNL 358 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 359 -KRVPRVYS 366 >gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl] gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl] gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl] gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl] Length = 816 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 159/375 (42%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DLTA+ +N ++ +G V+K + YG G ++A A AG + V + Sbjct: 451 RPTWVHLDLTAIADNVRALRNHAG-VPLMVVLKGDGYGHGAARVARAALQAGAEMLAVAT 509 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123 + EG LR A I VL P Q +L+ + ++ + CG Sbjct: 510 LGEGRALRAQGIAAPILVLGYTPPWQAAEAIRLDLMLTLFDDDTAQALHAAALECGRPAR 569 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++VDTG RLGLS E F + + +H A AD+ QL RF+ Sbjct: 570 VHVKVDTGMARLGLSPAEVAPFLSRLRELPGIEPVALYTHFARADEADPTPTEQQLARFQ 629 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVV 236 +++ + A+S+ L P HF + RPG++ YG M+ + Sbjct: 630 AVLADLTAAGLRPPCVHAANSAATLRFPATHFDMVRPGLACYGLAPGAAAPLLPGMRPAL 689 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + ++ AG +SYGG R S IA +GYADG + Sbjct: 690 SFYTEVAQVKDHPAGTPISYGGTFVTARPSRIATIPVGYADGLRRSPPWR---------- 739 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + I+G PI+G+I MD M D+TD + GD + I G I +D++A GT Sbjct: 740 --EVLIRGQRAPIVGRICMDYAMVDVTDIPGVRRGDAVTIIGRQGDAVIGVDEIAGWLGT 797 Query: 353 TNYDLLVRIGTRYAK 367 +Y++L I R + Sbjct: 798 ISYEVLTGILPRVPR 812 >gi|229029807|ref|ZP_04185878.1| Alanine racemase [Bacillus cereus AH1271] gi|228731522|gb|EEL82433.1| Alanine racemase [Bacillus cereus AH1271] Length = 408 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 IEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K + + +S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +++I I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKIAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|210612599|ref|ZP_03289390.1| hypothetical protein CLONEX_01592 [Clostridium nexile DSM 1787] gi|210151524|gb|EEA82531.1| hypothetical protein CLONEX_01592 [Clostridium nexile DSM 1787] Length = 388 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + + KIDL A+ N M + + AV+K + YG G +IA + + Sbjct: 1 MKTYSRVYAKIDLDAIAYNMEQMKQNIRPETKVMAVIKADGYGHGAVQIAEMMERWNYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 F V +++E V LR Q I VL + P Q + + I + S++ Sbjct: 61 GFAVATLDEAVVLRTEGIQKPILVLGCVFPDQYMEMLKHEIRMNIYTEEMAESISRMAAR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + +++DTG +RLG + E + + + I +H AD+ Sbjct: 121 EGKTAYMHIKLDTGMSRLGFGINEQSAETIKRISKMPNVNMEGIFTHFTKADEKDKSFTK 180 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230 Q++ F + K ++S+GI+ P +F + R GIS YG Sbjct: 181 KQIQEFVWMTERLKEKNVRFTYEHCSNSAGIIDVPEANFDIVRAGISTYGLYPSEEVDKT 240 Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ + ++ + +++ G VSYGG IA +GYADGYP +LS Sbjct: 241 NVKLKPALALKSHVAFVKEIERGTPVSYGGTFVAKEKMKIATIPVGYADGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G PILG++ MD M D+T + GD + + G D + ++ Sbjct: 298 --------KGYVLIRGKKAPILGRVCMDQFMVDVTQIEGVSFGDKVTMIGKDGNEILPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ + +G R + Y Sbjct: 350 VLSELSGRFNYEFVCDLGKRIPRVY 374 >gi|193885277|pdb|3B8U|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221a gi|193885278|pdb|3B8U|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221a gi|193885279|pdb|3B8U|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221a gi|193885280|pdb|3B8U|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant E221a Length = 379 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 24 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 81 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 82 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 141 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 142 XLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 202 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLADRSTGADFGCQPVMSLTSS 260 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 309 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 370 TSRVAMKY 377 >gi|315925455|ref|ZP_07921666.1| alanine racemase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621356|gb|EFV01326.1| alanine racemase [Pseudoramibacter alactolyticus ATCC 23263] Length = 426 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 160/378 (42%), Gaps = 22/378 (5%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +I+L + +N H++ A AVVK +AYG G E + L + GV Sbjct: 39 AHRPTWAEINLDNVVSNLHAIQKHVGPGAALIAVVKADAYGHGIELV-QTLQDEGVGRMA 97 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V ++E + LR +L G+ Q I + ++ P + S+ S+ Sbjct: 98 VAFLDEAIALRQKGIDRCDIMLLGVTLTDQIPEIVEWDIEPTVDSLDFARALSEYAVKND 157 Query: 121 SHPYALQVD-TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 TG R+G EA + L + +H A AD+ +Q+ Sbjct: 158 VVVNVHVKVDTGMGRIGFRWDEAAEAIAAMAELPGINLLGLFTHFATADEADKTFTQLQM 217 Query: 180 ERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 +R+ + + +S+ I+ F RPGI LYG P Sbjct: 218 KRYLDVTRALNARGIQIPLKHVENSASIIDFGKTAFNAVRPGIILYGLYPSDEVKKAQLP 277 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T + RII ++ AG+ YG + D IA A+GYADGY LSG Sbjct: 278 LRPVMTFKTRIIHLKTVHAGDSCGYGRRFIAEGDRKIATLAVGYADGYTRMLSGK----- 332 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G + +I G P++G I MD M D+TD + D +++FG + ++++A G Sbjct: 333 -----GAEVWIHGRRAPVVGNICMDQCMVDVTDVPEAALFDEVELFGEHLPVEELAEKLG 387 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+L+ + R + Y Sbjct: 388 TINYELVCMVNKRVPRLY 405 >gi|258405606|ref|YP_003198348.1| alanine racemase [Desulfohalobium retbaense DSM 5692] gi|257797833|gb|ACV68770.1| alanine racemase [Desulfohalobium retbaense DSM 5692] Length = 390 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 104/388 (26%), Positives = 158/388 (40%), Gaps = 34/388 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL A+ +N + G + AVVK NAYG G ++A A AG V Sbjct: 4 RPIWAEIDLEAIAHNISEIRNAVGFGPQIMAVVKANAYGHGAVEVAQASLRAGASWLGVA 63 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 V EG++LR A I VL P + +L +S + ++ + + Sbjct: 64 RVAEGIELREAGIAAPILVLGTSPPECASELLAWDLRQTVSGLDDARALARHARNQDKTL 123 Query: 123 PYALQVDTGFNRLGL--------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L+VDTG RLGL A + L I +H ACAD Sbjct: 124 QVHLKVDTGMGRLGLLAGPELGGDFDAAGEEVVAIQQLSGIALEGIFTHFACADSRDKSS 183 Query: 175 NSVQLERFRTLISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 S Q +RF + A+S+ I+ P H L R GI LYG Sbjct: 184 ASRQWQRFTDFLETLDTRSLPRIPVRHAANSASIIDLPRTHLDLVRAGIMLYGLYPSAEV 243 Query: 229 SH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 H ++ +T +ARI ++ AG VSYG + IA +GYADGY LS Sbjct: 244 DHAGVRLKPAMTVKARISQVKDVPAGFCVSYGSTYTTPAPTRIATVPVGYADGYTRLLSS 303 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341 + G VP++G++ MD T+ D+ + GD + + G + Sbjct: 304 Q-----------AHMVVHGQRVPVVGRVCMDQTLLDVGGLPEVAAGDEVVLLGSQGEACV 352 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 D++A +GT NY+++ + R + + Sbjct: 353 SADELAELTGTINYEIVSTLMARVPRIF 380 >gi|160931457|ref|ZP_02078853.1| hypothetical protein CLOLEP_00290 [Clostridium leptum DSM 753] gi|156869522|gb|EDO62894.1| hypothetical protein CLOLEP_00290 [Clostridium leptum DSM 753] Length = 396 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 167/386 (43%), Gaps = 32/386 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++DL AL +N + + ++ +A+ V+K + YG G +A AG F V+ Sbjct: 6 KRTWAQVDLDALDHNIREIRSAIAPSAKLMCVIKADGYGHGAVPLAKESEAAGADWFAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 ++EE +LR Q I +L +++ + + S S G Sbjct: 66 NLEEAQELREAGIQKPILILGFTPDSDARLLAQMEISQAVLSESHARQLSSYAQEAGTRV 125 Query: 123 PYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPS--SHV 174 + VDTG R+GLS Q A L + +H A AD+ + Sbjct: 126 RVHIAVDTGMTRIGLSAQNQTQALEAAAAARRIAELPGLLLEGLFTHFAVADEAEAGADY 185 Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-- 227 Q + FR + KG ++S+GIL P +F L R GI LYG Sbjct: 186 TKRQYQSFRLVADTLKGWGISIPFCHCSNSAGILDYPEMNFNLVRAGIILYGLEPSSKVR 245 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + ++ ++ ++ + +++ G VSYG R++ IA IGYADGYP LS L Sbjct: 246 RPLDLRPLMELKSVVSMVKTVGPGVDVSYGRTYTTRRETKIATVPIGYADGYPRALSNL- 304 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 G+ ++G I+G++ MD M D+T +E GD + +FG D + + Sbjct: 305 ----------GEMLVRGQRARIIGRVCMDQLMLDVTHIPDVEEGDVVTVFGRDGGAFLPV 354 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 ++V+ T NY+ + +I R + Y Sbjct: 355 EEVSSLDQTINYETVCQITKRVPRIY 380 >gi|228945715|ref|ZP_04108062.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813936|gb|EEM60210.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 408 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAATEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|323975315|gb|EGB70418.1| alanine racemase [Escherichia coli TW10509] Length = 359 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG R++ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|255523385|ref|ZP_05390354.1| alanine racemase [Clostridium carboxidivorans P7] gi|296184669|ref|ZP_06853080.1| alanine racemase [Clostridium carboxidivorans P7] gi|255512843|gb|EET89114.1| alanine racemase [Clostridium carboxidivorans P7] gi|296050451|gb|EFG89874.1| alanine racemase [Clostridium carboxidivorans P7] Length = 386 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 106/384 (27%), Positives = 168/384 (43%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N +++DL L N S+ S + VVK +AYG G ++AP L G Sbjct: 1 MFRNFRSTWVEVDLDNLTYNMKSIRKKSKSKELIGVVKADAYGHGALEVAPVLLENGATR 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + EG++LR I +L + + ++ P ++S + SK Sbjct: 61 LAVAVLSEGIELRKSGISCHIMILGLTPNTLMDDLLEYDIEPAVTSYEYASELSKAAQAK 120 Query: 120 -VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VDTG R+G +++++ + ++ + SH AD+ + Sbjct: 121 DKVAKIHVAVDTGMGRIGFLPNEDSIEEVYKISKLPNIEIESLFSHFCTADELDKDYSHK 180 Query: 178 QLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q E++ + +A+S+ I+ P H++ RPGI LYG M Sbjct: 181 QFEKYNYFCEKLQEKGVKINMRDIANSAAIMELPETHYEGARPGIILYGYYPSTEVDKKM 240 Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + V+T +A I+ I+ GE + YG + + R S+IA +GYADGY LSG Sbjct: 241 LDIKPVMTWKADIMHIKTLEKGEYIGYGRKFRTERKSVIATLPVGYADGYTRMLSG---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDD 345 K I G P++G I MD M DIT+ ++VGD + + G D +DD Sbjct: 297 -------KAKVIINGKFAPVVGNICMDQCMIDITEIEDVKVGDEVILMGSDGTLKFDVDD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+LL I R + Y Sbjct: 350 MAPMLGTINYELLCMISKRVPRVY 373 >gi|114564506|ref|YP_752020.1| alanine racemase [Shewanella frigidimarina NCIMB 400] gi|122298735|sp|Q07XT3|ALR_SHEFN RecName: Full=Alanine racemase gi|114335799|gb|ABI73181.1| alanine racemase [Shewanella frigidimarina NCIMB 400] Length = 372 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 100/377 (26%), Positives = 177/377 (46%), Gaps = 29/377 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL-----------Y 53 F R +I AL++N + ++ N++ AVVK N YG G +A + Y Sbjct: 3 PFPRAEISRYALQSNLAQLRLIAPNSKIMAVVKANGYGHGLLNVAECVGLLNYVESVCKY 62 Query: 54 NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFY 112 + G F + +EE ++LR + ++ +L G + N+ V+ QL Sbjct: 63 HGGADGFGLARLEEALQLREGGVKGKLLLLEGFFRQSDLPTLVSHNIDTVVHHESQLQML 122 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPS 171 + +++DTG +R+G SL++ ++ + +++H ACAD+P Sbjct: 123 ETIA-LDKPVTVWIKIDTGMHRIGFSLEQFNSIYQRLLACPQVAKPIHLMTHFACADEPD 181 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--- 228 + + Q+ F +S +G + +LA+S+G L P RPGI+LYG + + Sbjct: 182 NPLTQTQMNAFEQQVSGLEG-DRTLANSAGTLFWPTSQADWVRPGIALYGVSPVVGDRGV 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 +H + + + +I +R+ AG+ V YG +D+ + V AIGY DGYP Sbjct: 241 NHRLIPAMELVSNLIAVREHKAGDSVGYGASWTAKKDTRLGVVAIGYGDGYPRNA----- 295 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 G +I G VPI+G+++MDM D+ VGD +Q++G + +++VA Sbjct: 296 ------PEGTPVWINGRRVPIVGRVSMDMLTVDLGADAQDNVGDSVQLWGKALAVEEVAE 349 Query: 349 ASGTTNYDLLVRIGTRY 365 GT Y+L+ ++ R Sbjct: 350 HIGTIAYELVTKLTPRV 366 >gi|82546378|ref|YP_410325.1| alanine racemase [Shigella boydii Sb227] gi|187732519|ref|YP_001882723.1| alanine racemase [Shigella boydii CDC 3083-94] gi|20137402|sp|Q932V0|ALR1_SHIDY RecName: Full=Alanine racemase, biosynthetic gi|123558063|sp|Q31TW1|ALR_SHIBS RecName: Full=Alanine racemase gi|226711059|sp|B2TX62|ALR_SHIB3 RecName: Full=Alanine racemase gi|16610215|dbj|BAB71770.1| alanine racemase [Shigella dysenteriae] gi|16610219|dbj|BAB71772.1| alanine racemase [Shigella flexneri] gi|81247789|gb|ABB68497.1| alanine racemase 1 [Shigella boydii Sb227] gi|187429511|gb|ACD08785.1| alanine racemase [Shigella boydii CDC 3083-94] gi|320174482|gb|EFW49622.1| Alanine racemase, biosynthetic [Shigella dysenteriae CDC 74-1112] gi|320185265|gb|EFW60041.1| Alanine racemase, biosynthetic [Shigella flexneri CDC 796-83] gi|332087804|gb|EGI92930.1| alanine racemase [Shigella boydii 3594-74] Length = 359 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|229155693|ref|ZP_04283799.1| Alanine racemase [Bacillus cereus ATCC 4342] gi|228627679|gb|EEK84400.1| Alanine racemase [Bacillus cereus ATCC 4342] Length = 408 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMIRVGIGIYGMYPSKEVDHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATIPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|289523438|ref|ZP_06440292.1| alanine racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503130|gb|EFD24294.1| alanine racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 362 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 150/370 (40%), Gaps = 24/370 (6%) Query: 13 LTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 L L++N+ + + + +VVK N YG+G IA AL AG Q F V + +E V L Sbjct: 3 LENLRHNFDKIKSFVGPRVQVMSVVKANGYGMGIVPIAKALEEAGCQRFAVATPDEAVAL 62 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYALQVDT 130 R + + VL D ++ ++ G +++DT Sbjct: 63 REAGIKEPLLVLGPSPIEAAGYYVDHDVAAALTDMEFACAASRVAEEKGKVAQLHVKIDT 122 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--H 188 G R+G +E + I +H A AD+P+ + Q RF + Sbjct: 123 GMGRIGFLPEELPHILPKLKGLSCIDIEGIFTHFATADEPNLEYSRWQFRRFMKALDILA 182 Query: 189 YKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVVTAEARII 243 GI+ + +S+GIL P YH RPG+ LYG + P V + + Sbjct: 183 DFGIKVRLRHVCNSAGILNLPEYHLDAVRPGLILYGMWPSDSCRKPFDLKKVFQIKTEVA 242 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R G V YG + + IAV +GY DGYP LS S IK Sbjct: 243 ALRTLPLGSGVGYGLRYMTRGEEKIAVLPVGYHDGYPRVLSMRAS-----------VLIK 291 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLV 359 G PI+G I MD M ++T ++V D + G ++ +++A GT NY++ Sbjct: 292 GIRAPIVGNICMDQMMVNVTHIPDVKVKDEAVLIGAQGDEEVTTEEIAKIIGTINYEVPN 351 Query: 360 RIGTRYAKFY 369 R + Y Sbjct: 352 LFTPRVPRVY 361 >gi|313109932|ref|ZP_07795860.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 39016] gi|310882362|gb|EFQ40956.1| biosynthetic alanine racemase [Pseudomonas aeruginosa 39016] Length = 363 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 169/366 (46%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+++N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLVATVDLSAIRHNYALAKRCAPQRQAFAVVKANAYGHGAREVVTALHD-DADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R ARI +L G E + + ++ + + Sbjct: 61 LEEAAEVRALHASARILLLEGCFEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + + + +ISH ACAD+ + + QLE F Sbjct: 121 WLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLG 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ + SLA+S+ +L P H RPGI LYG T + S ++ ++ A+ Sbjct: 181 LLDLDFD-QRSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLRPAMSLGAQ 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R + I + GYADGYP + G Sbjct: 240 LISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPR-----------TAPAGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM D++D VGD ++++G + +D+VA A GT Y+LL ++ Sbjct: 289 VGGRRATLAGRVSMDMLAVDLSDLPEARVGDPVELWGAGLSVDEVARACGTLGYELLSKV 348 Query: 362 GTRYAK 367 G R + Sbjct: 349 GARVPR 354 >gi|319776471|ref|YP_004138959.1| alanine racemase [Haemophilus influenzae F3047] gi|329123976|ref|ZP_08252524.1| alanine racemase [Haemophilus aegyptius ATCC 11116] gi|317451062|emb|CBY87295.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus influenzae F3047] gi|327467720|gb|EGF13215.1| alanine racemase [Haemophilus aegyptius ATCC 11116] Length = 360 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L + V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGIALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQIYRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|61218413|sp|P0A4X2|ALR_MYCTU RecName: Full=Alanine racemase gi|61218415|sp|P0A4X3|ALR_MYCBO RecName: Full=Alanine racemase Length = 386 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + +G+A+ AVVK + YG G ++A AG + V +V Sbjct: 13 LAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATV 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ +SS+ Q + G + Sbjct: 73 DEALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATV 132 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + ++SH+ AD P +N VQ +R Sbjct: 133 TVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQR 192 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F ++ + A L++SS + P+ F L RPGI++YG + + Sbjct: 193 FTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ IGYADG +L G Sbjct: 253 MTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-------- 304 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALAS 350 + I G P +G+I MD M D+ + GD +FGP I D A Sbjct: 305 ---EVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLV 361 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 362 GTIHYEVVTSPRGRITRTY 380 >gi|297528581|ref|YP_003669856.1| alanine racemase [Geobacillus sp. C56-T3] gi|297251833|gb|ADI25279.1| alanine racemase [Geobacillus sp. C56-T3] Length = 384 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 154/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL A+ +N ++ + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWVEIDLDAIYDNVANLRRFLPEGTQIMAVVKANAYGHGDAQVAATALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR A I VL P + + + + L S L + Sbjct: 65 AFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGSTPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L++DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPFVLEGVYTHFATADEVNTDYFSYQYAR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L + F + R GIS+YG + + ++ Sbjct: 185 FLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPLLPYELKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + + L + G + + G I +DDVA G Sbjct: 296 ---HVLVGGQRAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEVISIDDVARHLG 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|145631023|ref|ZP_01786799.1| alanine racemase [Haemophilus influenzae R3021] gi|144983490|gb|EDJ90966.1| alanine racemase [Haemophilus influenzae R3021] Length = 360 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|56418766|ref|YP_146084.1| alanine racemase [Geobacillus kaustophilus HTA426] gi|81819823|sp|Q5L3G4|ALR_GEOKA RecName: Full=Alanine racemase gi|56378608|dbj|BAD74516.1| alanine racemase [Geobacillus kaustophilus HTA426] Length = 384 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 155/378 (41%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL A+ +N ++ + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWVEIDLDAIYDNVANLRRFLPEGTQIMAVVKANAYGHGDAQVAATALEAGASRLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR A I VL P + + + + L S L + Sbjct: 65 AFLDEALALRKKGIDAPILVLGASRPEDVALAAEHRIALTVFRSDWLEKASSLYNGSTPI 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L++DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 125 HFHLKMDTGMGRLGVKDEEETKRIAALIDRHPPFVLEGVYTHFATADEVNTDYFSYQYAR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L + F + R GIS+YG + + ++ Sbjct: 185 FLHMLDWLPSRPPLVHCANSAAALRFSDRAFNMVRFGISMYGLAPSPDIKPLLPYELKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + + L + G + + G I +DDVA G Sbjct: 296 ---HVLVGGQRAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEVISIDDVARHLG 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ IG R + + Sbjct: 351 TINYEVPCTIGYRVPRIF 368 >gi|269103593|ref|ZP_06156290.1| alanine racemase biosynthetic [Photobacterium damselae subsp. damselae CIP 102761] gi|268163491|gb|EEZ41987.1| alanine racemase biosynthetic [Photobacterium damselae subsp. damselae CIP 102761] Length = 359 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 176/371 (47%), Gaps = 22/371 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL +N + + N++ AVVK NAYG G +A +L V + +E Sbjct: 4 ATAHIDTEALTHNLRQLRTQAPNSKILAVVKANAYGHGLLHVAKSLPT--VDAYGAARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G + P ++ N+ V+ S+ QL + G Sbjct: 62 EALTLRAGGIVKPILLLEGFYSPSDLPVLVTNNIHTVVHSIEQLEALEQAKLDG-PVVVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +RLG+ ++ +F + + ISH CADD S V + QLE F Sbjct: 121 LKIDTGMHRLGVRPEQIDEFITRLHACHNVAKPLRYISHFGCADDLQSDVTNQQLETFLA 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAE 239 L G E SLA+S+G+L P+ H + RPGI +YG + + ++ V+T Sbjct: 181 LTEGCTG-ERSLAASAGVLAWPDSHLEWIRPGIVMYGISPFAEPEMSASAYNLKPVMTLT 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +R GE V YGG RD+ + V AIGY DGYP + G Sbjct: 240 SSLIAVRDVKKGEQVGYGGNWTSERDTKVGVIAIGYGDGYPRSAPN-----------GTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +VP+ G+++MDM D+ +VGD ++G + + VA GT Y+L+ Sbjct: 289 ILVNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDEAILWGNGLPAEVVAEHIGTIAYELVT 348 Query: 360 RIGTRYAKFYT 370 ++ +R A YT Sbjct: 349 KLTSRVAMTYT 359 >gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963] gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963] Length = 870 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 160/384 (41%), Gaps = 27/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + + ++IDL+A+ NN + + + +K +AYG G K+A + + G Sbjct: 497 LQTERPTWVEIDLSAIGNNVRKIREIVGPGVQILISLKADAYGHGALKVARTVLHNGASM 556 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMSC 118 V ++ E LR A I + + Q + I + SS + Sbjct: 557 LGVATLSEAAALREAGIDAPILIFGYVPYWQMREAVRLDVTITLYSSESAQALARAAQAL 616 Query: 119 GVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 S ++VDTG RLG+ +E L + + ++ I +H A AD Sbjct: 617 RQSVRVHIKVDTGMGRLGIRSEQAEEILALVREAGELEGLEVEGIYTHFASADADDKTYA 676 Query: 176 SVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 QL RF+ ++ + A+S+ L P HF + RPGI++YG Sbjct: 677 HTQLARFQHILELLERAEICPPVVHAANSAATLSLPEAHFNMVRPGIAIYGLDPSEEVRV 736 Query: 231 PMQTV--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P ++ + +I ++ AGE +SYG R + IAV +GYADG+ +S Sbjct: 737 PDGFKAALSFKTQIAQVKMIPAGECISYGCTYVTERPTRIAVLPVGYADGFRRAPRNWES 796 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 + G P++G+I MD M D++ + +GD + + G ++ + Sbjct: 797 -----------VLVHGQEAPLIGRICMDQCMIDVSAIPQVRMGDEVVLIGRQGKAELTAE 845 Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368 ++A GT NY+++ I R + Sbjct: 846 EIARRLGTINYEVVAEILARVPRV 869 >gi|209522716|ref|ZP_03271274.1| alanine racemase [Arthrospira maxima CS-328] gi|209496765|gb|EDZ97062.1| alanine racemase [Arthrospira maxima CS-328] Length = 399 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 169/384 (44%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++D A+ NN + L S R AV+K +AYG G +A + GV DF V Sbjct: 24 HRAWVEVDRWAIANNVKQIRHLLSPETRLMAVIKADAYGHGAVSVAKIVSEIGVDDFAVA 83 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121 ++ EG++LR Q I VL +H E + P L S S Sbjct: 84 TIPEGIELRRLGIQQPILVLGAVHTSDEIKAIAHWGLQPTLCTPTQALLFSETLQSIKRS 143 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P L +DTG +RLG ++AL+F ++S I SH A AD + Q R Sbjct: 144 LPVQLNIDTGMSRLGTWWEQALEFVQLVRGLPNLEISGIYSHFATADIRDRTIMDQQHWR 203 Query: 182 FRTLISHYKGIEA-----------SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 F+ +++ + LA+S+ L P H+ + R G+SLYG + Sbjct: 204 FQQVLAQIQEHTTLFSIPTVKPCLHLANSAATLTDPALHYDMVRVGLSLYGLYPAPHLRS 263 Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 +Q ++ AR+ I+ AG VSYG + + + IAV IGYADG P LS Sbjct: 264 VVNLQPAMSIRARVTQIKTIEAGCGVSYGYKFIAKQKTPIAVVGIGYADGVPRHLSNQM- 322 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 K I+G VP +G ITMD M D+T ++VG+ + + G D I D Sbjct: 323 ----------KVLIRGQFVPQIGAITMDQLMLDVTAIPDLQVGEVVTLLGSDRHHSISAD 372 Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368 D A GT ++++L R + Sbjct: 373 DWAEQLGTISWEILCGFKHRLPRI 396 >gi|117617805|ref|YP_855561.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559212|gb|ABK36160.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 357 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 167/365 (45%), Gaps = 18/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +I+ AL++N + + + AVVK NAYG G +A L + + V +EE Sbjct: 6 AQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVD--ADAYAVARIEEA 63 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR I +L G + + N + + + L++ Sbjct: 64 LMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLKL 123 Query: 129 DTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG +RLG+ E F K + Q I++H + +D+ Q++ F L + Sbjct: 124 DTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLTA 183 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIIL 244 G E ++A+S+GIL P+ H RPG+ LYG + N + +Q V+T + ++I Sbjct: 184 PLLG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R AGE V YG RD+ + V AIGY DGYP G + G Sbjct: 243 VRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPN-----------GTPVLVNG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +VP++G+++MDMT D+ + + GD ++G + ++ VA GT Y+L+ ++ +R Sbjct: 292 RIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSR 351 Query: 365 YAKFY 369 Y Sbjct: 352 VFMEY 356 >gi|330445019|ref|ZP_08308673.1| alanine racemase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493137|dbj|GAA03170.1| alanine racemase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 359 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 22/371 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL +N + + N++ AVVK NAYG G ++A +L N V + V +E Sbjct: 4 ATAHIDTDALAHNLGLIRQQAPNSKILAVVKANAYGHGLLRVAQSLTN--VDAYGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G + P ++ N+ V+ S+ QL + Sbjct: 62 EALMLRAGGVVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQ-AELDSQVKVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG +RLG+ ++ DF + + + + ISH ADD SS + QL+ F Sbjct: 121 VKIDTGMHRLGVRPEDLTDFMARLNACENVAKPLRFISHFGNADDLSSDITLQQLDTFLN 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAE 239 L Y+G E SLA+S+G+L P+ + RPGI +YG + + ++ V+T Sbjct: 181 LTQDYQG-ERSLAASAGVLAWPDSQLEWIRPGIIMYGVSPFNEPERYASAYDLKPVMTLT 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +R GE V YGG RD+ + V AIGY DGYP + G Sbjct: 240 SSIIAVRDVKKGEKVGYGGIWTSERDTKMGVIAIGYGDGYPRSAPN-----------GTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +VP+ G+++MDM D+ +VGD ++G + + VA GT Y+L+ Sbjct: 289 VLVNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTAILWGEGLPAEIVAEHIGTIAYELIT 348 Query: 360 RIGTRYAKFYT 370 ++ R A YT Sbjct: 349 KLTPRVAMAYT 359 >gi|58257634|dbj|BAD88778.1| alanine racemase [synthetic construct] Length = 359 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEGQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ VA + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERVAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|237809465|ref|YP_002893905.1| alanine racemase [Tolumonas auensis DSM 9187] gi|237501726|gb|ACQ94319.1| alanine racemase [Tolumonas auensis DSM 9187] Length = 358 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +ID AL++N + + N + AVVK NAYG G ++A L A + V + Sbjct: 4 ATAQIDTQALQHNLAVVRSQIPANTKVVAVVKANAYGHGLIQVAKTL--ASADAYAVARL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE + LR I +L G + + N I + + M Sbjct: 62 EEALILRSSGIVKPIIMLEGFFSADDLPVLAANNIQTAVHSVEQLDALEQMQLPNPVTVW 121 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII-SHLACADDPSSHVNSVQLERFRT 184 L++DTG +RLG+ +EA +F N + +H + AD+ + + Q+E F Sbjct: 122 LKLDTGMHRLGVRPEEAEEFCERLANCRNVVQPFNFITHFSRADELDNLATTKQIELFNQ 181 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 L Y G E SLASS+GI+ + H RPGI LYG + + K H +Q V+T + Sbjct: 182 LTQKYAG-ECSLASSAGIMEWHDAHADWIRPGIMLYGASPFLGKTGYDHGLQPVMTLKTS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R GE V YG + +D+ + V AIGY DGYP G Sbjct: 241 LIAVRLVKQGEPVGYGAKWVAQQDTKVGVVAIGYGDGYPRMA-----------PSGVPVR 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VP++G+++MDM D+ + +VGD + ++G + ++ VA A GT Y+L+ ++ Sbjct: 290 VNGRIVPLVGRVSMDMLTVDLGPDATDKVGDDVTLWGEGLPVETVAEAIGTIPYELITKL 349 Query: 362 GTRYAKFY 369 R Y Sbjct: 350 TPRVIMEY 357 >gi|301170339|emb|CBW29945.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus influenzae 10810] Length = 360 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L + V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKELPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|90581360|ref|ZP_01237156.1| alanine racemase [Vibrio angustum S14] gi|90437470|gb|EAS62665.1| alanine racemase [Vibrio angustum S14] Length = 359 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 178/371 (47%), Gaps = 22/371 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL +N + + N++ AVVK NAYG G ++A L N V + V +E Sbjct: 4 ATAHIDTEALAHNLGLIRQHAPNSKVLAVVKANAYGHGLLRVAQTLSN--VDAYGVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G + P ++ N+ V+ S+ QL + Sbjct: 62 EALILRAGGIVKPILLLEGFYAPSDLPVLVTNNIHTVVHSIEQLEALEQTELDN-PVQVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG +RLG+ ++ DF + + + + ISH ADD SS + QL+ F Sbjct: 121 VKIDTGMHRLGVRPEDLTDFMARLNACENVAKPLRFISHFGNADDLSSDITLKQLDTFLD 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAE 239 L Y+G E SLA+S+GIL P+ + RPGI +YG + + ++ V+T Sbjct: 181 LTQDYQG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFNESERFASAYDLKPVMTLT 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +R GE V YGG RD+ + V AIGY DGYP T G Sbjct: 240 SSLIAVRDVKKGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +VP+ G+++MDM D+ +VGD ++G + + VA GT Y+L+ Sbjct: 289 VLVNGRIVPMAGRVSMDMLTVDLGPDAQDKVGDTATLWGEGLPSEIVAEHIGTIAYELVT 348 Query: 360 RIGTRYAKFYT 370 ++ R A YT Sbjct: 349 KLTPRVAMAYT 359 >gi|308406153|ref|ZP_07495313.2| alanine racemase alr [Mycobacterium tuberculosis SUMu012] gi|308364367|gb|EFP53218.1| alanine racemase alr [Mycobacterium tuberculosis SUMu012] Length = 370 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 160/374 (42%), Gaps = 26/374 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+++N + +G+A+ AVVK + YG G ++A AG + V +V+E + Sbjct: 2 VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 61 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129 LR A + ++ +SS+ Q + G + ++VD Sbjct: 62 LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 121 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRTLI 186 TG NR G+ + ++SH+ AD P +N VQ +RF + Sbjct: 122 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 181 Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEA 240 + + A L++SS + P+ F L RPGI++YG + + +T + Sbjct: 182 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 241 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + L++ AGE VSYG RD+ +A+ IGYADG +L G + Sbjct: 242 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRL-----------EV 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNY 355 I G P +G+I MD M D+ + GD +FGP I D A GT +Y Sbjct: 291 LINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHY 350 Query: 356 DLLVRIGTRYAKFY 369 +++ R + Y Sbjct: 351 EVVTSPRGRITRTY 364 >gi|315287851|gb|EFU47253.1| alanine racemase [Escherichia coli MS 110-3] Length = 359 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINHRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|317133520|ref|YP_004092834.1| alanine racemase [Ethanoligenens harbinense YUAN-3] gi|315471499|gb|ADU28103.1| alanine racemase [Ethanoligenens harbinense YUAN-3] Length = 393 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 167/384 (43%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++DL ++ N+ ++ A +S ++ +VK + YG G +A A +AG F V+ Sbjct: 6 KRTWAEVDLDKIEANYLAIRAYVSPQSKIMTIVKADGYGHGAPFVAKAFDDAGTDWFGVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 ++EE +LR+ + I +L P ++ + + S+ + G + Sbjct: 66 NIEEAEQLRIAGIEKPILILGYTPPEFAGMLIKQRVTQTLFSMEYGEQLSAAAKEAGGTV 125 Query: 123 PYALQVDTGFNRLGL---SLQEALDFTHNS---FNKKLGQLSLIISHLACADDPSSHVNS 176 L++DTG +R+G ++A + ++ + +H A +D+P + Sbjct: 126 DVHLKLDTGMSRIGFLFHGEEDAPALLQDGAAAAALPNLRIDGVFTHFAVSDEPGNPFTR 185 Query: 177 VQLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q ERF ++ +G+ +S+G+L P + RPGI LYG T + P Sbjct: 186 TQFERFIRAVALLEEQGLRFSLRHCCNSAGLLNYPEMQLDMVRPGIILYGLTPAVGMPLP 245 Query: 232 M--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + Q + + + + G VSYG + + IGYADGY +LS Sbjct: 246 IELQPAMALKTMLFQTKTLTPGTPVSYGMIYRTPSARRVGTLPIGYADGYARSLSDRAD- 304 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 I G I+G++ MD M D+TD + + GD + + G D + +++ Sbjct: 305 ----------VLIHGKRARIVGRVCMDQCMADVTDIPNAQSGDVVTVIGRDGGETVSMEE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+ IG R + + Sbjct: 355 IAAQMGTINYETACLIGKRVPRVF 378 >gi|163816712|ref|ZP_02208075.1| hypothetical protein COPEUT_02902 [Coprococcus eutactus ATCC 27759] gi|158447969|gb|EDP24964.1| hypothetical protein COPEUT_02902 [Coprococcus eutactus ATCC 27759] Length = 387 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 173/384 (45%), Gaps = 27/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + ++ I+L +++N +M +L + + AV+K +AYG G ++A AL + V Sbjct: 1 MRNYNRVQAVINLDNIRHNVAAMKSLVDKDKKMLAVIKADAYGHGAVEVAHALNDM-VDF 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 F V ++E ++LR + I +L P K++ D ++ P I V S+ Sbjct: 60 FAVAFIDEAIELRNAGFKKPILILGYTDPEDYKLLIDFDVRPAIYDVDDARKLSETAVGK 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G ++VDTG R+G S +A + ++ + +H A AD+ Sbjct: 120 GAKAKIHIKVDTGMGRIGFSCDDAGVKHIEEISRMPGIEIEGMFTHYAKADELDKTAAKG 179 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 QL++FR + + +++S+GI+ N F + R GI YG + Sbjct: 180 QLDKFRWINRQLEDKHIYIPVRHISNSAGIMEMDNSDFDMVRSGIVTYGLYPSEEVDKSI 239 Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +++I ++ AG + YG D +A + GYADGYP S + Sbjct: 240 VDLRPAMSLTSKVIFVKDVKAGTGIGYGWSYIADHDIRVATVSAGYADGYPRAQSNI--- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G+ I G PI+G++ MD M D++ ++V D + + G I +++ Sbjct: 297 --------GRVIIHGQYAPIIGRVCMDQFMVDVSHIDDVKVRDDVILIGRAGDKVITVEE 348 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA + + NY+L+ I R + Y Sbjct: 349 VAEPANSFNYELVCNISRRVPREY 372 >gi|302874151|ref|YP_003842784.1| alanine racemase [Clostridium cellulovorans 743B] gi|307689590|ref|ZP_07632036.1| alanine racemase [Clostridium cellulovorans 743B] gi|302577008|gb|ADL51020.1| alanine racemase [Clostridium cellulovorans 743B] Length = 386 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 160/384 (41%), Gaps = 26/384 (6%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + +I+L L +N + ++ AVVK + YG G + L G Sbjct: 1 MFKHIRPVWAEINLDNLAHNMREIKKITRAKDIIAVVKADGYGHGAIDTSKILLENGATA 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 V + E V+LR + I +L + ++ P + + S + Sbjct: 61 LAVAVISEAVELRRNGIKCPIMILGYTPTIYGDSLVKYDISPTVFTYEYAKELSDIAKAE 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + +DTG R+G +++ + + I SH + +D+ + Sbjct: 121 DKIIKIQVALDTGMGRIGFMPDKNSVEEVYKISKLPNISIEGIFSHFSTSDEANKKFTLE 180 Query: 178 QLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231 QL+++ I + +A+S+ I+ + HF+ R GI +YG + Sbjct: 181 QLKKYEDFIHNLEERGINIKIRHIANSAAIIDLKDTHFEAVRSGIIMYGYYPSKEVNVSK 240 Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T + II ++K +SYG K ++ +IA +GYADGY LS Sbjct: 241 LLLKPVMTLKTNIIHVKKLPKDYSISYGRTYKTQKEEIIATLPVGYADGYTRQLSD---- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 + I G + P++G+I MD M ++TD +++GD + + G + DD Sbjct: 297 -------KAQVIINGKLAPVVGRICMDQCMVNVTDIDDVKIGDEVILMGQCDNVKMDADD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY+++ IG R + Y Sbjct: 350 IAGLLETINYEVVCMIGKRVPRVY 373 >gi|323965715|gb|EGB61167.1| alanine racemase [Escherichia coli M863] gi|327250397|gb|EGE62110.1| alanine racemase [Escherichia coli STEC_7v] Length = 359 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTRCKNVRQPVNIVSHFARADEPKCGATEKQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG R++ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|227505268|ref|ZP_03935317.1| alanine racemase [Corynebacterium striatum ATCC 6940] gi|227198167|gb|EEI78215.1| alanine racemase [Corynebacterium striatum ATCC 6940] Length = 363 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 164/371 (44%), Gaps = 21/371 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 LR +IDL A+ +N + A+ VVK +AYG G +++AP + AG F V ++ Sbjct: 1 MLRTRIDLDAIAHNVSLLKEKVAPAQLMCVVKADAYGHGVKEVAPVMAAAGADAFGVATL 60 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E V+LR I + + + S+ + V+ Sbjct: 61 DEAVELRRSGIDQPIAAWIWDSTDEVAEALACRIHIGVPSLTHARCL---VETEVAAKVY 117 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF--R 183 ++V+TG +R G+ + + + ++ ++SH ACAD+P + N Q F Sbjct: 118 IKVETGLHRSGVDESDWDEVFALFRDAPQIEVLGLMSHFACADEPDNPFNDEQEATFRRA 177 Query: 184 TLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + G+E LA+S +L P+ +F+L RPG++ YG + H ++ +T A Sbjct: 178 IERARAAGLECPINHLANSPAVLDRPSAYFELVRPGLACYGLEPIPGRDHGLKPAMTWAA 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ ++ AGE SYG + +A GYADG P G Sbjct: 238 SIVNVKPIEAGEATSYGQTWHAEKRGFLATVPCGYADGLPRDFQG-----------KLHV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLL 358 I G + P +G++ MD + D+ D ++ GD IFG + +A A+GT NY+++ Sbjct: 287 GIGGKLYPQVGRVCMDQIVVDLGDNEYGVQQGDEAIIFGVGGMSATALADAAGTINYEVI 346 Query: 359 VRIGTRYAKFY 369 R R + Y Sbjct: 347 CRPTGRSVRKY 357 >gi|148255205|ref|YP_001239790.1| putative alanine racemase (alr) [Bradyrhizobium sp. BTAi1] gi|146407378|gb|ABQ35884.1| putative alanine racemase (alr) [Bradyrhizobium sp. BTAi1] Length = 394 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 179/365 (49%), Gaps = 11/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + + A A V+K +AYG G ++A L AG + FFV ++ E Sbjct: 28 LTIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLSEA 87 Query: 69 VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 R P A ++VL G + N PVI + +L + G A+ Sbjct: 88 KVARTALPDSAALYVLDGFFQNTGEDYAAINCRPVIGDLNELAEWDMFCRRTGWKGGAAI 147 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTG NRLG + +A ++LI+SHLA A+ +S N+ QL FR + Sbjct: 148 HVDTGMNRLGFTPTDAQGMI-PRIQSGDHGITLIMSHLASAEQLNSPSNARQLSLFREVA 206 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 S + G+ A+LA+SSGI LG + F + RPG +LYG +PMQ V +ARI+ +R Sbjct: 207 SVFTGVPAALAASSGIFLGAAFQFDMVRPGAALYGINPTPEADNPMQPVAEIKARIVQLR 266 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G+ V YGG R + IA+ + GYADGY S D G I G Sbjct: 267 DLARGDTVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTR------GADVVIAGQR 320 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P+ G+++MD+ D+TD G + + G I +D++A GT Y+++ +G R Sbjct: 321 CPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGITVDELAHHFGTIGYEVMTNLGRR 380 Query: 365 YAKFY 369 Y + Y Sbjct: 381 YHRIY 385 >gi|58257636|dbj|BAD88779.1| alanine racemase [synthetic construct] Length = 359 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEGQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|320160719|ref|YP_004173943.1| alanine racemase [Anaerolinea thermophila UNI-1] gi|319994572|dbj|BAJ63343.1| alanine racemase [Anaerolinea thermophila UNI-1] Length = 370 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 167/380 (43%), Gaps = 26/380 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H++ L+IDL+ ++ N + ++G AVVK NAYG G + + A AGVQ Sbjct: 3 HADLTTWLEIDLSVIRKNIRLLQEIAG-VPVMAVVKANAYGHGLIEASRAAVQAGVQWLG 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGV 120 V ++E ++L +A VL P + + V S + ++ + G Sbjct: 62 VARIDEALELHRAGIRAHPIVLGYTPPERAGEAAQAGVRLAVYDSQVAQAYAAQAKAVGK 121 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + DTG RLG S +E +++ + Q+ +HLA ADDP QL+ Sbjct: 122 PLYVHAKFDTGMGRLGASPEEGVEWMRWLHTLEGLQVEGAFTHLAEADDPQKPTTHWQLD 181 Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQ 233 RF L+ + + A+S+G L P + L R GI++YG + P + Sbjct: 182 RFDKLLSGLESAGLRPAWVHAANSAGALYFPRARYNLVRTGIAIYGLNPSAHAPLPEGFR 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T + R+ ++ +SY + + + I V A+GYADG+ + + Sbjct: 242 PALTWKTRLTSVKIFPPNHGISYNYRYRTKSEERIGVCAVGYADGFRRQMGNM------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G VP++G + MD M ++ ++GD + + G +I ++ A Sbjct: 295 ------VLVRGRRVPVVGSVCMDQCMVNLDQVPEAQMGDEVVLIGQQGNDEITAEERAHE 348 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y+++ + R + Y Sbjct: 349 WGTIHYEVVCGLANRLPRIY 368 >gi|260773727|ref|ZP_05882642.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14] gi|260610688|gb|EEX35892.1| alanine racemase biosynthetic [Vibrio metschnikovii CIP 69.14] Length = 366 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 110/373 (29%), Positives = 176/373 (47%), Gaps = 21/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL AL++N+ + +LSG + AV+K +AYG G ++A AL F Sbjct: 1 MKT---AQASIDLIALRHNYLRLKSLSGQQKLIAVIKGDAYGHGAVQLAKAL--PMADWF 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V VEE +L + +L G + + + + + + Sbjct: 56 AVARVEEAEELIANGIDQPVLLLEGCFCADDLQRAADLKLATVIHCEEQLRDLEQSNLAN 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQL 179 L++DTG +RLG+ ++ ++ KL +SH +CADD S Q+ Sbjct: 116 PISIWLKIDTGMHRLGVQPEQVTEYVQRIERSGKLKGQLGFMSHFSCADDLSHPATLKQI 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVV 236 E F Y G SLA+S+GIL P F + R GI+LYG + + H + V+ Sbjct: 176 ECFSQAAFPYSG-PKSLANSAGILFWPESQFNVARAGIALYGISPSLYHSGIDHQLLPVM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T R+I +R+ A + V YG RD+ I V A+GY DGYP + Sbjct: 235 TVTTRLIAVRQHTANQPVGYGETWYAKRDTKIGVIAMGYGDGYPRSA-----------PA 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G FI G VPI+G+++MDM D+ +VGD ++++G ++ ++ VA GT Y+ Sbjct: 284 GTPVFINGRQVPIVGRVSMDMITVDLGPDAMDKVGDSVEMWGKNLPVETVAKHIGTIPYE 343 Query: 357 LLVRIGTRYAKFY 369 L +++ R A+ Y Sbjct: 344 LTIKLTNRVARHY 356 >gi|153938703|ref|YP_001390994.1| alanine racemase [Clostridium botulinum F str. Langeland] gi|152934599|gb|ABS40097.1| alanine racemase [Clostridium botulinum F str. Langeland] gi|295319053|gb|ADF99430.1| alanine racemase [Clostridium botulinum F str. 230613] Length = 389 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 103/384 (26%), Positives = 163/384 (42%), Gaps = 27/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 3 RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V + E +LR I +L P + I D N+ PV+ S SK S Sbjct: 63 VACLSEATELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKNR 122 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG E+L+ + ++ + SH + +D+ + Q Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDENDKSYSEYQF 182 Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 + F+ GI +++S+ I+ P+ + R GI LYG + ++ Sbjct: 183 KIFQNFRKKLIGINMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLH 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T +A I+ I+ +G+ V Y + K R S IA+ +GY DGY LS Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345 GK I G PI+G I MD M D+TD ++VGD + I G D +D Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A G T+ +++ I R + Y Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375 >gi|193063073|ref|ZP_03044165.1| alanine racemase [Escherichia coli E22] gi|194426899|ref|ZP_03059452.1| alanine racemase [Escherichia coli B171] gi|260846847|ref|YP_003224625.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O103:H2 str. 12009] gi|192931332|gb|EDV83934.1| alanine racemase [Escherichia coli E22] gi|194415235|gb|EDX31504.1| alanine racemase [Escherichia coli B171] gi|195183272|dbj|BAG66813.1| alanine racemase 1 [Escherichia coli O111:H-] gi|257761994|dbj|BAI33491.1| alanine racemase 1, PLP-binding, biosynthetic [Escherichia coli O103:H2 str. 12009] gi|323162193|gb|EFZ48056.1| alanine racemase [Escherichia coli E128010] Length = 359 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGIIKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|220918668|ref|YP_002493972.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956522|gb|ACL66906.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1] Length = 395 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 19/373 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL +N + A + AR AVVK NAYG G A AG V Sbjct: 14 RPVWAEIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVC 73 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 V+E +LR +A + V+ + L P + ++ + ++ G P Sbjct: 74 VDEAEELRRAGVEAPLLVIGNTPASDAARVVALRLRPAVGAMDLVEALSAEARRRGAEVP 133 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NR GL + + ++ + +H A A++ Q E R Sbjct: 134 IHLELESGLNRHGLPPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLR 193 Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240 + E ++S+ ILL + R G+SLYG ++ V++ A Sbjct: 194 ETSRRLPWVPERHCSASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDADLRPVMSLRA 253 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+ + G V YG R + +A+ GYADGY + + Sbjct: 254 RVARVSDVDRGATVGYGRTWAANRPTRVALVMCGYADGYRRSFGNR-----------TQV 302 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 + G P++G++ MDM M D+T + GD + + G D + DD+A + T +++ Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAPGDVVTLIGRDGDERVDADDLATIADTISWE 362 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 363 ILAGISARVPRLY 375 >gi|300115384|ref|YP_003761959.1| alanine racemase [Nitrosococcus watsonii C-113] gi|299541321|gb|ADJ29638.1| alanine racemase [Nitrosococcus watsonii C-113] Length = 356 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 173/367 (47%), Gaps = 19/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F + ID +AL++N + L+ +R AVVK + YG G +A AL F V Sbjct: 2 NFPQAIIDASALRHNLQRVRELAPRSRIMAVVKADGYGHGLTSVAGALVA--ADAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + + +L GI ++ + + + ++ + + P Sbjct: 60 LEEAMALRQAGHRCPVVLLGGIADKEQLQLAAAHRLTLVVHEFAQLELLERVPIISPLPV 119 Query: 125 ALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+ DTG +RLG S + A + + +++HLA AD+ + +QL+ F Sbjct: 120 WLKADTGMHRLGFSPEVAAEAVARLRGCPAVASVVGVMTHLASADESEDSLTPIQLQVFE 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240 + + G+ S+A+S+ +++ P+ HF RPG+ LYG + + +++V+T + Sbjct: 180 EIAA--PGLLRSMANSAAVIIYPHVHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLKT 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I G+ + YG ++ VAA+GY DGYP G Sbjct: 238 RLIATHHLRPGDSIGYGATWVCPEAMMVGVAALGYGDGYPRHA-----------RSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G V ++G+++MDM D+ +VGD + +GPD+ +++VA + T Y+LL + Sbjct: 287 LVNGRPVSLVGRVSMDMITLDLRTQPEAKVGDPVIAWGPDLPVEEVARHATTIPYELLCQ 346 Query: 361 IGTRYAK 367 + R + Sbjct: 347 VTARVPR 353 >gi|209885499|ref|YP_002289356.1| alanine racemase [Oligotropha carboxidovorans OM5] gi|209873695|gb|ACI93491.1| alanine racemase [Oligotropha carboxidovorans OM5] Length = 412 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 195/364 (53%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW ++ + + A +AV+K +AYG G + L +AG + FFV ++ E Sbjct: 26 LTIDLDAIVANWKALESRTVPAECSAVIKADAYGCGLTPVTRKLASAGCKTFFVATLAEA 85 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127 + R P+A I+VL G+ + PVI + +L + + + G ALQ Sbjct: 86 KQAREAAPKAVIYVLNGLFANCGDDFAKIDARPVIGDLNELAEWDAFRRTRGWRGQAALQ 145 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 ++TG NRLGL+ EA + ++L++SHLACA+D ++ +N QL FR + S Sbjct: 146 INTGMNRLGLNPDEARGLA-PRIREPDHGIALVLSHLACAEDVANPMNGRQLAAFRDVAS 204 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL +SSGI LGP++H L RPG +LYG +PMQ V+ + RI IR Sbjct: 205 EFSGVPASLVNSSGIFLGPHFHMDLARPGAALYGLNPTPGSDNPMQPVIGLKVRIAQIRS 264 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 E V YG R + +A+ + GYADGY SG++ S + + G Sbjct: 265 VPKDETVGYGALWHAKRPTRLAIVSAGYADGYFRAASGIEGTRS------AQVVVAGQRC 318 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI+G+++MD+ DITD ++ G ++ + G I D+++ GT Y++L +G RY Sbjct: 319 PIVGRVSMDLMAIDITDVPHGAVRRGHFVTLIGDGITADELSHHFGTIGYEVLTSLGHRY 378 Query: 366 AKFY 369 A+ Y Sbjct: 379 ARDY 382 >gi|294667296|ref|ZP_06732516.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602968|gb|EFF46399.1| alanine racemase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 366 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 164/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-AYGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIGAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQHTAHTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQADIGTPVQLWGDAPQVGALAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRVY 354 >gi|325923659|ref|ZP_08185284.1| alanine racemase [Xanthomonas gardneri ATCC 19865] gi|325545858|gb|EGD17087.1| alanine racemase [Xanthomonas gardneri ATCC 19865] Length = 366 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 166/368 (45%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQALIDLDALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ Q Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATTQQVRALADFQSPRPLRA 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKLDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELECSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG ++ + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQETESTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRELPAGEPVGYGARFVAQRPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+T+ E+G +Q++G ++ +A + Y LL + Sbjct: 288 VDGVVCPLIGRVSMDMLTVDLTEHPQAEIGAPVQLWGDAPRVAPLATQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRTY 354 >gi|153209215|ref|ZP_01947281.1| alanine racemase [Coxiella burnetii 'MSU Goat Q177'] gi|212218349|ref|YP_002305136.1| alanine racemase, biosynthetic [Coxiella burnetii CbuK_Q154] gi|226711036|sp|B6J6U2|ALR_COXB1 RecName: Full=Alanine racemase gi|120575470|gb|EAX32094.1| alanine racemase [Coxiella burnetii 'MSU Goat Q177'] gi|212012611|gb|ACJ19991.1| alanine racemase, biosynthetic [Coxiella burnetii CbuK_Q154] Length = 364 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 173/370 (46%), Gaps = 23/370 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I++TALK+N + AL+ + A++K N YG G ++A AL +A F V Sbjct: 2 NRATATINVTALKHNLSQIKALAPKSLAWAMIKSNGYGHGLVRVAKALSDANA--FGVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR ++ I V+ G + E F + + + + + S Sbjct: 60 IDEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEKTNLTSSLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG NRLG S++++ + + + + +++HLA AD+ + +Q++RF Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--------INKSHPMQTV 235 ++ G S+ +S+G PN L RPGI LYG + + V Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDLIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A+II I+ + V YG D IA+ +IGY DGYP Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G + P++G+++MDM D+ + +VGD + ++G + ++ +A +GT Y Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347 Query: 356 DLLVRIGTRY 365 +LL +I R Sbjct: 348 ELLCKITQRV 357 >gi|261341531|ref|ZP_05969389.1| alanine racemase [Enterobacter cancerogenus ATCC 35316] gi|288316330|gb|EFC55268.1| alanine racemase [Enterobacter cancerogenus ATCC 35316] Length = 359 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 165/368 (44%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFEAADLPTIAEQHLHTSVHNEEQLVALETAELSEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEDAETFYQRLCQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPGAR-SIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLVSN 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWTSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G V ++G++ MDM D+ + GD + ++G + ++ +A +G + Y+L+ R+ Sbjct: 290 VNGREVKLVGRVAMDMICVDLGPDAQDKAGDDVVMWGEGLPVERIAEMTGVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|188993228|ref|YP_001905238.1| alanine racemase [Xanthomonas campestris pv. campestris str. B100] gi|167734988|emb|CAP53200.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 360 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 164/369 (44%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G + AVVK +AYG G + A AL F V Sbjct: 2 RPAQALIDLDALRHNYRLARQL-GGGKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + P Sbjct: 60 IEEALELRQAGVRAPILLLEGFFEHDELALIAEHDLWTVVATPWQVRALAEFRSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ + ++++HLA AD+ Q F Sbjct: 120 WLKLDSGMHRLGLSPEDFRAAWLHLRGLPQIDSLVLMTHLAQADELECSRTDEQAVAFAL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 + E SL +S G+L P +RPG+ LYG S ++ V+T +R Sbjct: 180 TCGGMRA-ETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQPSELTAQLRPVMTVRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+T+ +VG +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTEHPHADVGTPVQLWGDAPQVSTLAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRHYS 355 >gi|21233076|ref|NP_638993.1| alanine racemase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770016|ref|YP_244778.1| alanine racemase [Xanthomonas campestris pv. campestris str. 8004] gi|23813644|sp|Q8P4R0|ALR_XANCP RecName: Full=Alanine racemase gi|81304032|sp|Q4UQB5|ALR_XANC8 RecName: Full=Alanine racemase gi|21114928|gb|AAM42917.1| alanine racemase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575348|gb|AAY50758.1| alanine racemase [Xanthomonas campestris pv. campestris str. 8004] Length = 360 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 164/369 (44%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G + AVVK +AYG G + A AL F V Sbjct: 2 RPAQALIDLDALRHNYRLARQL-GGGKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + + + P Sbjct: 60 IEEALELRQAGVRAPILLLEGFFEHDELALIAEHDLWTVVATPWQVRALAEFRSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ + ++++HLA AD+ Q F Sbjct: 120 WLKLDSGMHRLGLSPEDFRAAWLHLRGLPQIDSLVLMTHLAQADELECSRTDEQAVAFAL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 + E SL +S G+L P +RPG+ LYG S ++ V+T +R Sbjct: 180 TCGGMRA-ETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQPSELTAQLRPVMTVRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R AGE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRDLPAGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+T+ +VG +Q++G ++ +A + Y LL + Sbjct: 288 VDGKVCPLIGRVSMDMLTVDLTEHPHADVGTPVQLWGDAPQVSTLAAQCNVSAYQLLCGL 347 Query: 362 GTRYAKFYT 370 R + Y+ Sbjct: 348 -KRVPRHYS 355 >gi|260582214|ref|ZP_05850008.1| alanine racemase [Haemophilus influenzae NT127] gi|260094846|gb|EEW78740.1| alanine racemase [Haemophilus influenzae NT127] Length = 360 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 109/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 ++ +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V AIGY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAIGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|260914151|ref|ZP_05920624.1| alanine racemase [Pasteurella dagmatis ATCC 43325] gi|260631784|gb|EEX49962.1| alanine racemase [Pasteurella dagmatis ATCC 43325] Length = 360 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 108/366 (29%), Positives = 173/366 (47%), Gaps = 16/366 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + KI ALK+N ++ + NA+ AVVK NAYG G ++ A+ V F V Sbjct: 2 NMKPATAKISSVALKHNIQTIKQKAPNAKIIAVVKANAYGHGVVFVSEAVEKM-VDCFGV 60 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE + LR I +L G Q+ I N I + + + Sbjct: 61 ARLEEALSLRSNGITKPILLLEGFFCTQDLPILAVNNIQTVVHNIEQLEALQSSDLPNPI 120 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG +RLG+ L + +F N +SH + AD+ S ++QL R Sbjct: 121 KVWLKIDTGMHRLGVDLSQVDEFYQALKNTPNVDPNIGFVSHFSRADEIHSDYTALQLNR 180 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239 F + KG E S+A+S GIL + H RPGI +YG + + + V+T Sbjct: 181 FLQATADKKG-ERSIAASGGILFWEDSHLDWIRPGIIMYGIAPINVPAREYDLTPVMTLT 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ GE V YGG +D+ I V AIGY DGYP + G Sbjct: 240 SSLISVKAHKKGEPVGYGGVWVSDKDTKIGVVAIGYGDGYPRDI-----------PTGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+GK++MDM D+ +VGD + ++G ++ ++++A SG +Y+L+ Sbjct: 289 VYLNGRRVPIVGKVSMDMLTVDLGQDSQDKVGDEVILWGKELPIEEIAELSGVISYELIT 348 Query: 360 RIGTRY 365 ++ R Sbjct: 349 KLTPRV 354 >gi|196046083|ref|ZP_03113311.1| alanine racemase [Bacillus cereus 03BB108] gi|225864057|ref|YP_002749435.1| alanine racemase [Bacillus cereus 03BB102] gi|196023138|gb|EDX61817.1| alanine racemase [Bacillus cereus 03BB108] gi|225790862|gb|ACO31079.1| alanine racemase [Bacillus cereus 03BB102] Length = 391 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ + V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|16273470|ref|NP_439721.1| alanine racemase [Haemophilus influenzae Rd KW20] gi|260580354|ref|ZP_05848183.1| alanine racemase [Haemophilus influenzae RdAW] gi|1168421|sp|P45257|ALR_HAEIN RecName: Full=Alanine racemase gi|1574412|gb|AAC23218.1| alanine racemase, biosynthetic (alr) [Haemophilus influenzae Rd KW20] gi|260093031|gb|EEW76965.1| alanine racemase [Haemophilus influenzae RdAW] Length = 360 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 ++ +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|16762928|ref|NP_458545.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767497|ref|NP_463112.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144415|ref|NP_807757.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416047|ref|YP_153122.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161617376|ref|YP_001591341.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552528|ref|ZP_02346281.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991437|ref|ZP_02572536.1| alanine racemase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168236939|ref|ZP_02661997.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243645|ref|ZP_02668577.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168821308|ref|ZP_02833308.1| alanine racemase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194448214|ref|YP_002048237.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194735891|ref|YP_002117180.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262039|ref|ZP_03162113.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364974|ref|YP_002144611.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244007|ref|YP_002218141.1| alanine racemase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204927044|ref|ZP_03218246.1| alanine racemase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355019|ref|YP_002228820.1| alanine racemase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859401|ref|YP_002246052.1| alanine racemase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051931|ref|ZP_03344809.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424514|ref|ZP_03357311.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647520|ref|ZP_03377573.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|238913004|ref|ZP_04656841.1| alanine racemase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824655|ref|ZP_06544182.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60391222|sp|P0A1A3|ALR1_SALTY RecName: Full=Alanine racemase, biosynthetic gi|60391223|sp|P0A1A4|ALR1_SALTI RecName: Full=Alanine racemase, biosynthetic gi|25291655|pir||AF1016 alanine racemase (EC 5.1.1.1) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|153865|gb|AAA27022.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16422805|gb|AAL23071.1| biosynthetic alanine racemase 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505235|emb|CAD09231.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140053|gb|AAO71617.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130304|gb|AAV79810.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366740|gb|ABX70508.1| hypothetical protein SPAB_05231 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406518|gb|ACF66737.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711393|gb|ACF90614.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096451|emb|CAR62057.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240294|gb|EDY22914.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290054|gb|EDY29413.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938523|gb|ACH75856.1| alanine racemase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204323709|gb|EDZ08904.1| alanine racemase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274800|emb|CAR39859.1| alanine racemase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322805|gb|EDZ10644.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330206|gb|EDZ16970.1| alanine racemase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337286|gb|EDZ24050.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342080|gb|EDZ28844.1| alanine racemase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711204|emb|CAR35580.1| alanine racemase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249345|emb|CBG27208.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996559|gb|ACY91444.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160739|emb|CBW20270.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915352|dbj|BAJ39326.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088655|emb|CBY98413.1| alanine racemase 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223115|gb|EFX48185.1| Alanine racemase, biosynthetic [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615403|gb|EFY12323.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618463|gb|EFY15352.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622125|gb|EFY18975.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627196|gb|EFY23988.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631156|gb|EFY27920.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637626|gb|EFY34327.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642511|gb|EFY39111.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643608|gb|EFY40163.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648343|gb|EFY44802.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654652|gb|EFY50972.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659612|gb|EFY55855.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662179|gb|EFY58395.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666075|gb|EFY62253.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672495|gb|EFY68606.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675924|gb|EFY71995.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680409|gb|EFY76447.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684697|gb|EFY80701.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132586|gb|ADX20016.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195961|gb|EFZ81127.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197109|gb|EFZ82250.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201773|gb|EFZ86837.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206287|gb|EFZ91249.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213298|gb|EFZ98100.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215668|gb|EGA00412.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222091|gb|EGA06477.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226502|gb|EGA10708.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229127|gb|EGA13256.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236263|gb|EGA20339.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237617|gb|EGA21678.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241717|gb|EGA25746.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248136|gb|EGA32073.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254534|gb|EGA38345.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258406|gb|EGA42083.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259686|gb|EGA43320.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265959|gb|EGA49455.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270401|gb|EGA53849.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625939|gb|EGE32284.1| alanine racemase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630171|gb|EGE36514.1| alanine racemase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991063|gb|AEF10046.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 359 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|145637837|ref|ZP_01793485.1| alanine racemase [Haemophilus influenzae PittHH] gi|145268980|gb|EDK08935.1| alanine racemase [Haemophilus influenzae PittHH] Length = 360 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|262045542|ref|ZP_06018563.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037101|gb|EEW38351.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 359 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 171/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G ++ + + P+ + + Sbjct: 62 EALRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQADLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S K + Q ++SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P H+ RPGI LYG + Q V+T + Sbjct: 182 TEGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGNDFGCQPVMTLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRA-----------TPSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +PI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREMPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|168231244|ref|ZP_02656302.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168466930|ref|ZP_02700778.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194472435|ref|ZP_03078419.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249755|ref|YP_002149160.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194458799|gb|EDX47638.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630651|gb|EDX49263.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213458|gb|ACH50855.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205334185|gb|EDZ20949.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 359 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|301156142|emb|CBW15613.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus parainfluenzae T3T1] Length = 360 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 174/364 (47%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK+N + + +++ AVVK NAYG G ++ AL + V F V Sbjct: 4 KPATAKISSLALKHNLQVIKEKAPHSKIIAVVKANAYGHGVVFVSSALESM-VDCFAVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G ++ I N I + + K Sbjct: 63 LEEALSLRSNGIIKPILLLEGFFDEKDLPIIAVNNIETVVHNREQLEALKRAVVPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG+SL E F ++ +SH + AD+ S VQL+RF Sbjct: 123 WLKIDTGMHRLGVSLDEVDYFYQELKKLPQIQPHLGFVSHFSRADELDSDYTQVQLDRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H RPGI +YG + + + V+ + Sbjct: 183 QATKNKEG-ERTIAASGGILFWPEAHLDCIRPGIIMYGISPTDTVGAEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ +R+ GE V YGG +D+ I V AIGY DGYP V G + Sbjct: 242 LLAVREHKKGEPVGYGGIWTSPKDTKIGVVAIGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ + +VGD + ++G ++ ++ VA SG +Y+L+ ++ Sbjct: 291 LNGRIVPIVGRVSMDMLTVDLGEDSQDKVGDEVILWGKELPIETVAKYSGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|256019701|ref|ZP_05433566.1| alanine racemase [Shigella sp. D9] gi|332280832|ref|ZP_08393245.1| alanine racemase 1 [Shigella sp. D9] gi|332103184|gb|EGJ06530.1| alanine racemase 1 [Shigella sp. D9] Length = 359 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG D+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSECDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|15602278|ref|NP_245350.1| alanine racemase [Pasteurella multocida subsp. multocida str. Pm70] gi|20137233|sp|Q9CNL5|ALR_PASMU RecName: Full=Alanine racemase gi|12720664|gb|AAK02497.1| Alr [Pasteurella multocida subsp. multocida str. Pm70] Length = 360 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 173/366 (47%), Gaps = 16/366 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + KI ALK+N ++ + ++ AVVK NAYG G ++ A V F V Sbjct: 2 NMKPATAKISSVALKHNIQTIKQKAPQSKIIAVVKANAYGHGVVFVS-AAVEELVDCFGV 60 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE + LR I +L G ++ + N I + + K Sbjct: 61 ARLEEALSLRSNGITKPILLLEGFFCDKDLPVIAINNIQTVVHNVEQLEALKAAKVPNPI 120 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG +RLG++L++ F ++ + +SH + AD+ +QL R Sbjct: 121 KVWLKIDTGMHRLGVALEDVEYFYQALRDSENVDPQIGFVSHFSRADELECDYTKLQLTR 180 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239 F + G E S+A+S GIL + H RPGI +YG + + + + V+T Sbjct: 181 FLNATQNKAG-EKSIAASGGILFWESSHLDWIRPGIIMYGISPINVPAQEYDLTPVMTLT 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I++ GE V YGG +D+ I V AIGY DGYP + G Sbjct: 240 SSLIAIKQHKKGEPVGYGGIWVSDKDTKIGVVAIGYGDGYPRDI-----------PTGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G VPI+G+++MDM D+ +VGD + ++G ++ ++++A SG +Y+L+ Sbjct: 289 VYLNGRRVPIVGRVSMDMLTVDLGAEAQDKVGDEVILWGKELPIEEIADISGVISYELIT 348 Query: 360 RIGTRY 365 ++ R Sbjct: 349 KLTPRV 354 >gi|319897248|ref|YP_004135443.1| alanine racemase 1, plp-binding, biosynthetic [Haemophilus influenzae F3031] gi|317432752|emb|CBY81117.1| alanine racemase 1, PLP-binding, biosynthetic [Haemophilus influenzae F3031] Length = 360 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 109/364 (29%), Positives = 174/364 (47%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L + V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I I + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETIVHNREQLEALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTKLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG +RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSSRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D++ +VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLSTDSQDQVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|62182696|ref|YP_219113.1| alanine racemase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224586012|ref|YP_002639811.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62130329|gb|AAX68032.1| alanine racemase 1, biosynthetic [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224470540|gb|ACN48370.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322717195|gb|EFZ08766.1| alanine racemase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 359 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFSAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|84622288|ref|YP_449660.1| alanine racemase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123523220|sp|Q2P7U1|ALR_XANOM RecName: Full=Alanine racemase gi|84366228|dbj|BAE67386.1| alanine racemase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 366 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 164/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVPCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 IIL+R GE V YG + R + + V A+GYADGYP G Sbjct: 239 IILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRTY 354 >gi|330501639|ref|YP_004378508.1| alanine racemase [Pseudomonas mendocina NK-01] gi|328915926|gb|AEB56757.1| alanine racemase [Pseudomonas mendocina NK-01] Length = 358 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 165/368 (44%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL+A+ +N+ + + AVVK NAYG G ++ AL++ F V Sbjct: 2 RPLAAIVDLSAIAHNYAVAKRCAPGRQAFAVVKANAYGHGVREVVTALHDL-ADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++R +AR+ +L G E I + ++ Sbjct: 61 LEEAAEVRAMHGEARVLLLEGCFEASEYAIAAQLGLDLVIQGAAQAEALLASDLVRPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG + N + ++SH ACAD+ + Q+ERF Sbjct: 121 WLKLDSGMHRLGFDAANLRHWYARLENAEQVNELNLLSHFACADERGHPLTEQQVERFLD 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ SLA+S+ +L P H RPGI LYG T S ++ +T AR Sbjct: 181 LLDLDFS-HRSLANSAAVLTIPAAHMDWLRPGIMLYGATPFAELSARELGLKPAMTLAAR 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YG R S IA + GYADGYP G Sbjct: 240 VIAVREVAIGESVGYGASWVAQRPSRIATVSCGYADGYPRHA-----------PSGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 ++G + G+++MDM DITD +V ++++G ++ LD+VA A T Y+LL ++ Sbjct: 289 VEGQRAALAGRVSMDMLTVDITDLPEADVDSPVELWGANLPLDEVAAACSTIGYELLSKV 348 Query: 362 GTRYAKFY 369 R + Y Sbjct: 349 TARVPRRY 356 >gi|200386495|ref|ZP_03213107.1| alanine racemase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603593|gb|EDZ02138.1| alanine racemase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 359 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTRCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CRGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|288937652|ref|YP_003441711.1| alanine racemase [Klebsiella variicola At-22] gi|288892361|gb|ADC60679.1| alanine racemase [Klebsiella variicola At-22] Length = 359 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRDLAPASKLVAVVKANAYGHGLLETARTLTD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G ++ + + P+ + + Sbjct: 62 EALRLRAGGIAQPILLLEGFFAAEDLAVIAAQRLHTAVHSPEQLAALEQADLPEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F S K + Q ++SH A AD+P+ QL+ F T Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLSQCKNVRQPVNVVSHFARADEPTCGATERQLDIFTTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P H+ RPGI LYG + K Q V+T + Sbjct: 182 TEGKPGLR-SIAASGGILLWPQSHYDWVRPGIILYGVSPLDDRSTGKDFGCQPVMTLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDAVVLWGEGLAVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|149907726|ref|ZP_01896473.1| alanine racemase [Moritella sp. PE36] gi|149809396|gb|EDM69325.1| alanine racemase [Moritella sp. PE36] Length = 357 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 168/369 (45%), Gaps = 18/369 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I L +L++N + ++ +++ AVVK NAYG G +A AL + V F V Sbjct: 2 RSATAEICLQSLQHNVQQIKNIAPHSKIMAVVKANAYGHGLLAVASALTD--VDAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 VEE + LR I +L G E I N I + Q + Sbjct: 60 VEEALTLRSGGIVKPILLLEGFFSTDELPILVANNIQTSVHIEQQLDELEQADLEAPIHV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG+ N Q + +++H +CAD+ + Q+ F Sbjct: 120 WLKMDTGMHRLGIRPDNCKRAIERLKNNPNVVQPARLMTHFSCADEADPSITQRQINIFD 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240 L++ +G E S+A+S+G+L P+ H RPGI LYG + I H ++ V+T Sbjct: 180 ELVAGEEG-EHSIANSAGVLAWPSAHRDWIRPGIMLYGVSPMIGATAVEHDLKPVMTLTT 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I + GE YGG + D+ + V A+GY DGYP G Sbjct: 239 DLIAVHDIKKGETTGYGGIWSASTDTRLGVVAVGYGDGYPRMA-----------PEGTPV 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G +VPI+G+++MDM D+ +VGD + ++G + + VA GT Y+L+ + Sbjct: 288 LINGRIVPIVGRVSMDMLTVDLGVDCQDKVGDKVIMWGAGLPAELVAEHIGTIAYELVTK 347 Query: 361 IGTRYAKFY 369 + R Y Sbjct: 348 LTQRVTLKY 356 >gi|306846133|ref|ZP_07478695.1| alanine racemase [Brucella sp. BO1] gi|306273384|gb|EFM55245.1| alanine racemase [Brucella sp. BO1] Length = 399 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVALLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------------INKSHPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|117923575|ref|YP_864192.1| alanine racemase [Magnetococcus sp. MC-1] gi|117607331|gb|ABK42786.1| alanine racemase [Magnetococcus sp. MC-1] Length = 396 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 106/381 (27%), Positives = 164/381 (43%), Gaps = 26/381 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ L+IDL AL++N + V+K + YG+G +A L F Sbjct: 17 THRPTWLEIDLAALRHNLRQARTATGPQVAHFPVIKADGYGIGAIAVAHTLEEE-ADGFC 75 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V VEE +LR RI + G++PG E+ + P +S L + C Sbjct: 76 VALVEEAEQLRTAGINKRIMLFSGLYPGLEERAIRARVEPFLSDEINLNALWQAAKCYGP 135 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++D+G RLG + + +L+ ++SH+ACADD S + + QL Sbjct: 136 ISVHIKIDSGMARLGYHPEHVPSLLDQLAHMPELKLAGLVSHMACADDRHSPITNAQLAT 195 Query: 182 FRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 ++ H + SLA+S+ IL PN H+Q RPGI +YG + + +Q Sbjct: 196 LSPILEHPLVKQTQAQLSLANSATILGHPNAHYQWVRPGIMIYGASPFFPHTNAANEGLQ 255 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 VV I I G+ + YG TR + IA +GYADGY S Sbjct: 256 PVVRWVTHIQRIHTLEKGKSLGYGHTFTATRPTRIAQLPVGYADGYNRLWSN-------- 307 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVAL 348 G I G P++G + MD DI+D ++ D + G +I L++ A Sbjct: 308 ---KGSVLIAGQHCPVVGIVCMDQIAVDISDLQGEVKQWDEAVLLGKQHNAEITLENWAT 364 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y++L RIG R + Y Sbjct: 365 ELKTIPYEILTRIGPRVPRRY 385 >gi|222107011|ref|YP_002547802.1| alanine racemase [Agrobacterium vitis S4] gi|221738190|gb|ACM39086.1| alanine racemase [Agrobacterium vitis S4] Length = 374 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 136/374 (36%), Positives = 202/374 (54%), Gaps = 16/374 (4%) Query: 1 MHSNEF-LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+++ F RL IDL AL +N+ + A + A T+AVVK +AYGLG ++ PALY AG + Sbjct: 9 MNADAFSARLVIDLDALADNYRQLAAETTPAETSAVVKADAYGLGAARVGPALYRAGCRK 68 Query: 60 FFVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 FFV +V+E LR + P A +F+L G+ PG E IPV++S+ QL +SK+ Sbjct: 69 FFVANVQEAAGLRQHLPGDAELFILNGLQPGAEPFAAANGFIPVLNSLEQLANWSKMASE 128 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G + P LQ DTG +RLG S +EA + + I+SHLA ADD +S N+ Sbjct: 129 FGRTLPAILQFDTGMSRLGFSPEEANVLAGDPALLSGLSIRYIMSHLASADDSASTQNAA 188 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 Q R ++ + GI ++S GI + +H L RPG++LYG M+ VV Sbjct: 189 QFSVMRERLAQFPGIALCFSNSGGIFIDKQFHGALVRPGVALYGAVPSDLAGRRMKPVVR 248 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A++I R AG V YG T+++ +A AIGYADG P LS Sbjct: 249 VDAKVIQTRTVPAGACVGYGATYVATKETRLATIAIGYADGLPRCLSDR----------- 297 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + +PI+G+++MD DI+ + +G +++ GP L+DVA A+GT Y Sbjct: 298 GAAYYGDIRLPIVGRVSMDSMTLDISALPPGTLTLGSLVEMIGPHQSLEDVAQAAGTIAY 357 Query: 356 DLLVRIGTRYAKFY 369 ++L +G RY + Y Sbjct: 358 EILTSLGHRYHRDY 371 >gi|168263431|ref|ZP_02685404.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194444595|ref|YP_002043497.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403258|gb|ACF63480.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205347865|gb|EDZ34496.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 359 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CRGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|154500510|ref|ZP_02038548.1| hypothetical protein BACCAP_04183 [Bacteroides capillosus ATCC 29799] gi|150270741|gb|EDM98037.1| hypothetical protein BACCAP_04183 [Bacteroides capillosus ATCC 29799] Length = 380 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 104/390 (26%), Positives = 164/390 (42%), Gaps = 33/390 (8%) Query: 1 MHS-NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M +I L L++N+ ++ AL R VVK NAYG G +A L G + Sbjct: 1 MERMQTRTWREISLANLEHNYRALRALLPQGCRFLGVVKANAYGNGAVPVAKRLEELGTE 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMS 117 V V+E +LR + I VL + +L + + ++ Sbjct: 61 YLAVACVDEAAELREAGVKTPILVLGDTPNECAADLLRLDLTQNVPDLETARALSAAAVA 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-----NKKLGQLSLIISHLACADDPSS 172 G + ++VDTG +RLG EA + I +H + +D + Sbjct: 121 AGKTMKVHMKVDTGMSRLGFLCDEAHMDASVEALAVASRLPGLEAEGIFTHFSDSDG-NE 179 Query: 173 HVNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 +Q RF ++ A+S +L P + + RPGI+LYG + Sbjct: 180 EYTMLQFGRFLAVLDRLAERGITFPIRHCANSGAVLHYPCTYLDMVRPGIALYGHYPAPD 239 Query: 228 KS----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ V+ ++RI +R AG VSYG L RDSL+AV IGYADG P Sbjct: 240 CEGLDGPGLRPVMELKSRIATVRALPAGTCVSYGRTCTLQRDSLLAVVPIGYADGLPRLC 299 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 S G + ++G PI+G++ MDM M D+TD ++ GD ++G D Sbjct: 300 SN-----------GLEMLVRGQRAPIVGRVCMDMCMVDVTDIPGVQPGDVATVYGSDGDE 348 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + ++ A +GT Y+LL + R + Y Sbjct: 349 TVTVEAAAERAGTIQYELLCAVSERVPRVY 378 >gi|330828532|ref|YP_004391484.1| alanine racemase [Aeromonas veronii B565] gi|328803668|gb|AEB48867.1| Alanine racemase [Aeromonas veronii B565] Length = 357 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 168/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +I+ AL++N + + + AVVK NAYG G +A L + + V +E Sbjct: 4 ATAQINTAALRHNLAVVKRHAPACKIIAVVKANAYGHGLLPVARTLVD--ADAYAVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + + N + + + + L Sbjct: 62 EALMLRSCAVVKPIVLLEGFFSADDLPVLAANNLQTAVHTWEQLEALEQVELPAPVVAWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ E F K + Q I++H + +D+ Q++ F L Sbjct: 122 KLDTGMHRLGVRADEMPAFIERLGKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSKL 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242 + G E ++A+S+GIL P+ H RPG+ LYG + N + +Q V+T + ++ Sbjct: 182 TAPLAG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTIAADYDLQPVMTLKTQL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE V YG RD+ + V AIGY DGYP G I Sbjct: 241 IAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPN-----------GTSVLI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +VP++G+++MDM+ D+ + + GD ++G + ++ VA GT Y+L+ ++ Sbjct: 290 NGRIVPLVGRVSMDMSTVDLGPGATDKPGDEAVLWGEGLPVERVADEIGTIPYELITKLT 349 Query: 363 TRYAKFY 369 +R Y Sbjct: 350 SRVFMEY 356 >gi|170754426|ref|YP_001781290.1| alanine racemase [Clostridium botulinum B1 str. Okra] gi|169119638|gb|ACA43474.1| alanine racemase [Clostridium botulinum B1 str. Okra] Length = 389 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 163/384 (42%), Gaps = 27/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 3 RNHRPVWEEVNLDNLSYNMRNIKNKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V + E ++LR I +L P + I D N+ PV+ S SK S Sbjct: 63 VACLSEAIELREGGINCPINILGITPPTLFEDIIDYNIEPVVFSYDCANQLSKAASLKNR 122 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG E+L+ + ++ + SH + +D+ + Q Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182 Query: 180 ERF----RTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 + F + LI I +S+ I+ P+ + R GI LYG + ++ Sbjct: 183 KIFQNFRKKLIEMNMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLH 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T +A I+ I+ +G+ V Y + K R S IA+ +GY DGY LS Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345 GK I G PI+G I MD M D+TD ++VGD + I G D +D Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A G T+ +++ I R + Y Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375 >gi|254720214|ref|ZP_05182025.1| Alr, alanine racemase [Brucella sp. 83/13] gi|265985224|ref|ZP_06097959.1| alanine racemase [Brucella sp. 83/13] gi|306838644|ref|ZP_07471480.1| alanine racemase [Brucella sp. NF 2653] gi|264663816|gb|EEZ34077.1| alanine racemase [Brucella sp. 83/13] gi|306406287|gb|EFM62530.1| alanine racemase [Brucella sp. NF 2653] Length = 399 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTILSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------------INKSHPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|302519607|ref|ZP_07271949.1| alanine racemase [Streptomyces sp. SPB78] gi|302428502|gb|EFL00318.1| alanine racemase [Streptomyces sp. SPB78] Length = 378 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 155/379 (40%), Gaps = 29/379 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +IDL AL+ N + + A AVVK +AYG G A A AG V + Sbjct: 8 PRAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPA 67 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR + R+ G + + ++ +S + + G + Sbjct: 68 EALALRAAGAEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAAAARAVGATARVH 127 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ DTG R G + N+ + L ++ + SH ACAD+P + QL F Sbjct: 128 LKADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLF 187 Query: 183 RTL--ISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQ 233 + ++ G+ LA+S L P H+ L RPGI++YG + ++ Sbjct: 188 EEMTGLAARLGVRAEVRHLANSPATLSLPESHYDLVRPGIAMYGLSPSPAMGTHTDFGLR 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ A + L+++ G VSYG D+ + + +GY DG P SG Sbjct: 248 PVMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASGS------- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G + G + G+I MD + D+ G +FGP + +D A A Sbjct: 301 ----GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPAA-GSEAVLFGPGDRGEPSAEDWARA 355 Query: 350 SGTTNYDLLVRIGTRYAKF 368 + + Y+++ RIG R + Sbjct: 356 ADSIVYEIVTRIGARVPRV 374 >gi|30262102|ref|NP_844479.1| alanine racemase [Bacillus anthracis str. Ames] gi|47527372|ref|YP_018721.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184943|ref|YP_028195.1| alanine racemase [Bacillus anthracis str. Sterne] gi|165870205|ref|ZP_02214861.1| alanine racemase [Bacillus anthracis str. A0488] gi|167633047|ref|ZP_02391373.1| alanine racemase [Bacillus anthracis str. A0442] gi|167638340|ref|ZP_02396617.1| alanine racemase [Bacillus anthracis str. A0193] gi|170686461|ref|ZP_02877682.1| alanine racemase [Bacillus anthracis str. A0465] gi|170706003|ref|ZP_02896465.1| alanine racemase [Bacillus anthracis str. A0389] gi|177650850|ref|ZP_02933747.1| alanine racemase [Bacillus anthracis str. A0174] gi|190568000|ref|ZP_03020911.1| alanine racemase [Bacillus anthracis Tsiankovskii-I] gi|227815101|ref|YP_002815110.1| alanine racemase [Bacillus anthracis str. CDC 684] gi|229604370|ref|YP_002866463.1| alanine racemase [Bacillus anthracis str. A0248] gi|254684669|ref|ZP_05148529.1| alanine racemase [Bacillus anthracis str. CNEVA-9066] gi|254737113|ref|ZP_05194817.1| alanine racemase [Bacillus anthracis str. Western North America USA6153] gi|254743702|ref|ZP_05201387.1| alanine racemase [Bacillus anthracis str. Kruger B] gi|30256728|gb|AAP25965.1| alanine racemase [Bacillus anthracis str. Ames] gi|47502520|gb|AAT31196.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178870|gb|AAT54246.1| alanine racemase [Bacillus anthracis str. Sterne] gi|164714093|gb|EDR19614.1| alanine racemase [Bacillus anthracis str. A0488] gi|167513641|gb|EDR89010.1| alanine racemase [Bacillus anthracis str. A0193] gi|167531859|gb|EDR94524.1| alanine racemase [Bacillus anthracis str. A0442] gi|170129005|gb|EDS97870.1| alanine racemase [Bacillus anthracis str. A0389] gi|170669537|gb|EDT20279.1| alanine racemase [Bacillus anthracis str. A0465] gi|172083311|gb|EDT68372.1| alanine racemase [Bacillus anthracis str. A0174] gi|190561055|gb|EDV15029.1| alanine racemase [Bacillus anthracis Tsiankovskii-I] gi|227006748|gb|ACP16491.1| alanine racemase [Bacillus anthracis str. CDC 684] gi|229268778|gb|ACQ50415.1| alanine racemase [Bacillus anthracis str. A0248] Length = 391 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ + V+ Sbjct: 11 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 71 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 131 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 190 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 191 VNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 251 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 300 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 360 NYEVTCMLDRRIPRVY 375 >gi|194432311|ref|ZP_03064599.1| alanine racemase [Shigella dysenteriae 1012] gi|194419514|gb|EDX35595.1| alanine racemase [Shigella dysenteriae 1012] gi|320179049|gb|EFW54008.1| Alanine racemase, biosynthetic [Shigella boydii ATCC 9905] gi|332084266|gb|EGI89469.1| alanine racemase [Shigella dysenteriae 155-74] Length = 359 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEKAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDNAGDSVILWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|148826764|ref|YP_001291517.1| alanine racemase [Haemophilus influenzae PittGG] gi|148718006|gb|ABQ99133.1| alanine racemase [Haemophilus influenzae PittGG] Length = 360 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLEALKRSNLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTNTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|68249839|ref|YP_248951.1| alanine racemase [Haemophilus influenzae 86-028NP] gi|148826096|ref|YP_001290849.1| alanine racemase [Haemophilus influenzae PittEE] gi|229847109|ref|ZP_04467214.1| alanine racemase [Haemophilus influenzae 7P49H1] gi|68058038|gb|AAX88291.1| alanine racemase [Haemophilus influenzae 86-028NP] gi|148716256|gb|ABQ98466.1| alanine racemase [Haemophilus influenzae PittEE] gi|229809938|gb|EEP45659.1| alanine racemase [Haemophilus influenzae 7P49H1] Length = 360 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLEALKRSNLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|318058076|ref|ZP_07976799.1| alanine racemase [Streptomyces sp. SA3_actG] Length = 378 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 156/379 (41%), Gaps = 29/379 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +IDL AL+ N + + A AVVK +AYG G A A AG V + Sbjct: 8 PRAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPA 67 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR + R+ G + + ++ +S + + G + Sbjct: 68 EALALRAAGAEGRMLCWLWTPGGPWRAAIEADIDVSVSGQWALDEVAAAARAAGATARVH 127 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ DTG R G + N+ + L ++ + SH ACAD+P + QL F Sbjct: 128 LKADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTLF 187 Query: 183 RTL--ISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQ 233 + ++ G+ +A+S L P H+ L RPGI++YG + + ++ Sbjct: 188 EEMTGLAARLGVRAEVRHIANSPATLSLPESHYDLVRPGIAMYGLSPSPTMGTHTDFGLR 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ A + L+++ G VSYG D+ + + +GY DG P SG Sbjct: 248 PVMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASGS------- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G + G + G+I MD + D+ G +FGP + +D A A Sbjct: 301 ----GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPA-PGSEAVLFGPGDRGEPSAEDWARA 355 Query: 350 SGTTNYDLLVRIGTRYAKF 368 + + Y+++ RIG R + Sbjct: 356 ADSIVYEIVTRIGARVPRV 374 >gi|77163759|ref|YP_342284.1| alanine racemase region [Nitrosococcus oceani ATCC 19707] gi|254435880|ref|ZP_05049387.1| alanine racemase [Nitrosococcus oceani AFC27] gi|123595159|sp|Q3JEJ2|ALR_NITOC RecName: Full=Alanine racemase gi|76882073|gb|ABA56754.1| alanine racemase [Nitrosococcus oceani ATCC 19707] gi|207088991|gb|EDZ66263.1| alanine racemase [Nitrosococcus oceani AFC27] Length = 356 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 170/367 (46%), Gaps = 19/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 F + ID +AL++N + L+ ++ AVVK + YG G ++A L F V Sbjct: 2 NFPQAIIDASALRHNLQRVRELAPRSQIMAVVKADGYGHGLTRVADVLVA--ADAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE LR + + +L GI ++ + + + ++ + + P Sbjct: 60 LEEATALRQAGHRCPVVLLGGISDKEQLQLAAAHRLTLVVHEFAQLDLLERVRITSPLPV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++ DTG +RLG Q + + ++SHLA AD+ + +QL+ F Sbjct: 120 WVKADTGMHRLGFPPQVVAKAIARLRCCPAVASVVGLMSHLASADESEDFLTPIQLQTFE 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240 + + G+ S+A+S+ +++ P HF RPG+ LYG + + +++V+T + Sbjct: 180 GIAA--PGLLRSMANSAAVMVYPYAHFDWVRPGLMLYGASPFAHGTGAAVGLKSVMTLQT 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I I G+ + YG + VAA+GY DGYP G Sbjct: 238 RLIAIHHLRPGDSIGYGATWVCPEAMTVGVAALGYGDGYPRHA-----------VSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G VP++G+++MDM D+ +VGD + +GP++ +++VA + T Y+LL + Sbjct: 287 LVNGRPVPLVGRVSMDMITLDLRTQPKAKVGDPVIAWGPNLPVEEVARHATTIPYELLCQ 346 Query: 361 IGTRYAK 367 + R + Sbjct: 347 VTGRVPR 353 >gi|154706770|ref|YP_001424314.1| alanine racemase, biosynthetic [Coxiella burnetii Dugway 5J108-111] gi|189027532|sp|A9KFM0|ALR_COXBN RecName: Full=Alanine racemase gi|154356056|gb|ABS77518.1| alanine racemase, biosynthetic [Coxiella burnetii Dugway 5J108-111] Length = 364 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 171/370 (46%), Gaps = 23/370 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I++TALK+N + AL+ + ++K N YG G ++A AL +A F V Sbjct: 2 NRATATINVTALKHNLSQIKALAPKSLAWVMIKSNGYGHGLVRVAKALSDANA--FGVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR ++ I V+ G + E F + + + + + S Sbjct: 60 IDEALTLREVGIKSPIIVMKGFYNEAELSQFARHRLGAVIHCSDQVSLLEKTNLTSSLSV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG NRLG S++++ + + + + +++HLA AD+ + +Q++RF Sbjct: 120 WLKIDTGMNRLGFSVEQSPAVYNQLKTSSSIQKPIGLMTHLADADNENKTFTELQIKRFF 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--------INKSHPMQTV 235 ++ G S+ +S+G PN RPGI LYG + + V Sbjct: 180 SVTEKMIG-PKSIVNSAGFFAYPNALVDWIRPGIILYGISPFGINYNSFKEKIEKKFRPV 238 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A+II I+ + V YG D IA+ +IGY DGYP Sbjct: 239 MTLSAKIIAIKNRRQNDSVGYGCTWSCPEDMPIAIVSIGYGDGYPRHA-----------P 287 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G + P++G+++MDM D+ + +VGD + ++G + ++ +A +GT Y Sbjct: 288 SGTPVLLNGKICPLIGRVSMDMIAIDLRSQPNAQVGDDVILWGEGLPVEIIAEKAGTIAY 347 Query: 356 DLLVRIGTRY 365 +LL +I R Sbjct: 348 ELLCKITQRV 357 >gi|295101040|emb|CBK98585.1| alanine racemase [Faecalibacterium prausnitzii L2-6] Length = 398 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 165/385 (42%), Gaps = 32/385 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + +IDL AL++N+ ++ A +G AVVK ++YG G + A G V+ + Sbjct: 10 VWAEIDLDALRHNFRAVKARAGEMPLCAVVKADSYGHGAVECAKVFAEEGAAWLAVSCLA 69 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E +LR I +L + P ++ ++ S+PQ S+ GV Sbjct: 70 EARQLRKSGLTLPILILGHVEPSCAPVLIQEDITAACYSLPQAKALSEAACAAGVKVKVH 129 Query: 126 LQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQ 178 L+ DTG R+G AL ++ ++ + H A ADD S+ S Q Sbjct: 130 LKADTGMGRIGFALRTDFDAALAEMLDACRLPGLDVTGLFQHFAVADDDSADSVAYTSQQ 189 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYH------FQLTRPGISLYGGTDKIN 227 E F + ++ +S+G++L P++ + RPGI LYG Sbjct: 190 HELFVRACQGLAEAGFEPAVVHCDNSAGVMLHPDWPAGLPRTHCMARPGIILYGFDPSDE 249 Query: 228 KSHPMQTV-VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + + + + ++++ G+ SYG + + + +A GYADGYP LS Sbjct: 250 VRFGIFRPVMKLKTIVSMVKEMQPGQSASYGRRFTAEKPTKVATLCAGYADGYPRLLS-- 307 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLD 344 G IKG P+LG++ MD M D++ ++ GD ++G ++ + Sbjct: 308 --------CGKGIVEIKGMPCPVLGRVCMDQIMVDVSALPDVQEGDEAILWGGEVSDSAE 359 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++L + R + Y Sbjct: 360 TVAHKTDTISYEVLCGVSRRVPRVY 384 >gi|319404005|emb|CBI77593.1| Alanine racemase [Bartonella rochalimae ATCC BAA-1498] Length = 373 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 192/365 (52%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ A+ N+ ++ +AVVK +AYGLG EKIAPALY AG + FF+ ++E Sbjct: 19 ATIDIGAIIANYKTLVQRVAPVECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEA 78 Query: 69 VKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126 ++L+ P + L GI P E+ + T ++PV++S ++ + G P + Sbjct: 79 LQLKAILPNNVTLILLNGIPPTAEEFVTQTGIVPVLNSRNEIENWQMHCQKNGKKFPAII 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E N ++ + IISHLA D+ + N Q + + Sbjct: 139 QIDTNMNRLGLDQEELQWLIQNPTLFEIADIKYIISHLANGDNATHTSNCEQKNAMKKAL 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +ASLA+S GI LGP+++F L RPGI LYG +++V+ +A++I R Sbjct: 199 AQLPACKASLANSGGIFLGPDFYFDLVRPGIGLYGIDPHQKHPTSLKSVLKLKAQVIQSR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG + S++ +IGYADG+ LS G + + Sbjct: 259 CTEAGTPVGYGGSFITQKPSILTTISIGYADGWLRNLSN-----------KGSVYFNQHK 307 Query: 307 VPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+I+MD + D T+ + GD++++ G +++VA +GT Y++L +G+R Sbjct: 308 LPIIGQISMDSIIVDATNLKHEKPKRGDWVELIGKHQTVENVAADAGTIPYEILTSLGSR 367 Query: 365 YAKFY 369 Y + Y Sbjct: 368 YKRIY 372 >gi|193885273|pdb|3B8T|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant P219a gi|193885274|pdb|3B8T|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant P219a gi|193885275|pdb|3B8T|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant P219a gi|193885276|pdb|3B8T|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase Mutant P219a Length = 379 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 24 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 81 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 82 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 141 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 142 XLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 202 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSALEDRSTGADFGCQPVMSLTSS 260 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 309 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 370 TSRVAMKY 377 >gi|188578747|ref|YP_001915676.1| alanine racemase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523199|gb|ACD61144.1| alanine racemase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 366 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 164/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLCGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LSAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 IIL+R GE V YG + R + + V A+GYADGYP G Sbjct: 239 IILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD +G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQAAIGATVQLWGQAPRVGPLATQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRTY 354 >gi|118477525|ref|YP_894676.1| alanine racemase [Bacillus thuringiensis str. Al Hakam] gi|228927166|ref|ZP_04090229.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229091092|ref|ZP_04222315.1| Alanine racemase [Bacillus cereus Rock3-42] gi|229121649|ref|ZP_04250874.1| Alanine racemase [Bacillus cereus 95/8201] gi|229184316|ref|ZP_04311523.1| Alanine racemase [Bacillus cereus BGSC 6E1] gi|254720986|ref|ZP_05182777.1| alanine racemase [Bacillus anthracis str. A1055] gi|300118202|ref|ZP_07055950.1| alanine racemase [Bacillus cereus SJ1] gi|118416750|gb|ABK85169.1| alanine racemase [Bacillus thuringiensis str. Al Hakam] gi|228599112|gb|EEK56725.1| Alanine racemase [Bacillus cereus BGSC 6E1] gi|228661869|gb|EEL17484.1| Alanine racemase [Bacillus cereus 95/8201] gi|228692223|gb|EEL45959.1| Alanine racemase [Bacillus cereus Rock3-42] gi|228832492|gb|EEM78066.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|298724513|gb|EFI65207.1| alanine racemase [Bacillus cereus SJ1] Length = 408 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ + V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|306841349|ref|ZP_07474058.1| alanine racemase [Brucella sp. BO2] gi|306288652|gb|EFM59988.1| alanine racemase [Brucella sp. BO2] Length = 399 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 + L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 MALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------------INKSHPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKEPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVAKGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGMLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|317493449|ref|ZP_07951870.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918392|gb|EFV39730.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 359 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N+ + + ++R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNFQQIRQFAPHSRLIAVVKANAYGHGLLETAKTLKD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E +KLR I +L G + + N I + + + Sbjct: 62 EALKLRSGGIVKPILMLEGFFSADDLPVLVANNIETAIHSEEQLQALEEAELERPVKVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F N + Q I+SH + AD+P + + QL F Sbjct: 122 KLDTGMHRLGVRPEQADAFYTRLSNCRNVEQPVNIMSHFSRADEPETGMTEAQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242 + G++ S+A+S GILL H + RPGI LYG + + +Q V+T ++ + Sbjct: 182 ATGKPGLQ-SIAASGGILLWTQSHRDMVRPGIILYGVSPLAEPYADHYGLQPVMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V Y G RD+ + V AIGY DGYP + G + Sbjct: 241 IAVREHKAGEPVGYNGTWVSQRDTRLGVVAIGYGDGYPRSA-----------PSGTPVLV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI+G+++MDM D+ +VGD + ++ ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVPIVGRVSMDMISVDLGPEAKDKVGDEVVLWSAELPVEKIAKYTGISAYELITKLT 349 Query: 363 TRYAKFY 369 R Y Sbjct: 350 PRVTMEY 356 >gi|146309923|ref|YP_001174997.1| alanine racemase [Enterobacter sp. 638] gi|145316799|gb|ABP58946.1| alanine racemase [Enterobacter sp. 638] Length = 359 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFEATDLTTIADQHLHTAIHNEEQLLALETAELSEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSQCKNVHQPVNIVSHFARADEPECGATEQQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEAR 241 G+ S+A+S GILL P HF RPGI LYG + NK +Q V++ + Sbjct: 182 CEGKPGMR-SIAASGGILLWPQSHFDWARPGIILYGVSPLENKPWGPDFGLQPVMSLVSN 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG D+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSESDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G V I+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVKIVGRVAMDMICVDLGPDAQDKAGDAVVLWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|239832571|ref|ZP_04680900.1| alanine racemase [Ochrobactrum intermedium LMG 3301] gi|239824838|gb|EEQ96406.1| alanine racemase [Ochrobactrum intermedium LMG 3301] Length = 380 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 191/365 (52%), Gaps = 19/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ R AAVVK +AYGLG ++APA Y+AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIARHIAPTRAAAVVKADAYGLGASRVAPAFYDAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 + L+ + P A ++VL G+ PG E ++PV++S+ Q+ + + G P L Sbjct: 81 IALKPFLQPDATLYVLNGLQPGTEAACARDGILPVLNSLEQIENWGALAARQGRKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +RLGLS E N + +ISHLA D+P + N+ QL L+ Sbjct: 141 QLDTGMSRLGLSASEFERLLENFALLDNIDIKFVISHLASGDEPENAANARQLANMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + A+S G L +YHF L RPG++LYG + + V+T AR+I +R Sbjct: 201 VRLPKLPVAFANSGGSFLDKSYHFDLARPGVALYGVGPENE----IVPVLTLSARVIQVR 256 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YGG +A A+GYADG+ +LS G F Sbjct: 257 DIDKGAAVGYGGTYVAEGPMRVATIAVGYADGWFRSLSN-----------KGSAFFGDTR 305 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD D++ +++G +++ GP +L+DVA T Y++L +G R Sbjct: 306 LPIIGRVSMDSITLDVSALPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNR 365 Query: 365 YAKFY 369 YA+ Y Sbjct: 366 YARVY 370 >gi|82779537|ref|YP_405886.1| alanine racemase [Shigella dysenteriae Sd197] gi|123560897|sp|Q327W0|ALR_SHIDS RecName: Full=Alanine racemase gi|81243685|gb|ABB64395.1| alanine racemase 1 [Shigella dysenteriae Sd197] Length = 359 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELIARL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|49475978|ref|YP_034019.1| alanine racemase [Bartonella henselae str. Houston-1] gi|49238786|emb|CAF28055.1| Alanine racemase [Bartonella henselae str. Houston-1] Length = 372 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 181/364 (49%), Gaps = 14/364 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ A+ N+ ++ +AVVK NAYGLG KIAPALY AG + FFV +EE Sbjct: 19 ATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEA 78 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHPYAL 126 ++L+ P+ + L P + + + I S + + P + Sbjct: 79 LQLKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAII 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVDT +RLGL +E N + ++ I+SHLA +D S N+ QL F+ ++ Sbjct: 139 QVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVL 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + S A+S GI LG +++F L RPGI+LYG P++ VV EA+++ R Sbjct: 199 AQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQSR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V Y R S +A +IGYADG+P LS G + G+ Sbjct: 259 FIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHK 307 Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +PI+G I+MD + D TD + GD++++ GP L+ V+ + T +++L +G RY Sbjct: 308 LPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRY 367 Query: 366 AKFY 369 + Y Sbjct: 368 KRIY 371 >gi|301330573|ref|ZP_07223182.1| alanine racemase [Escherichia coli MS 78-1] gi|300843491|gb|EFK71251.1| alanine racemase [Escherichia coli MS 78-1] Length = 359 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELIARL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|153008776|ref|YP_001369991.1| alanine racemase [Ochrobactrum anthropi ATCC 49188] gi|151560664|gb|ABS14162.1| alanine racemase [Ochrobactrum anthropi ATCC 49188] Length = 380 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 197/365 (53%), Gaps = 19/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL+AL++N+ ++ R AAVVK +AYGLG ++APA Y+AG +DFFV + E Sbjct: 21 LTIDLSALRHNYSAIARHIAPTRAAAVVKADAYGLGASRVAPAFYDAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 + L+ + P A ++VL G+ PG E+ ++PV++S+ Q+ ++ L G P L Sbjct: 81 IALKPFIQPDATLYVLNGLQPGTEEACAREGILPVLNSLEQIENWAALATRQGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +RLGLS +E F N+ + +ISHLA D+P + N+ QL L+ Sbjct: 141 QLDTGMSRLGLSPKEFERFLENATLLDAIDIKFVISHLASGDEPENAANARQLANMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + + A+S G L YHF L RPG++LYG K + V+T AR+I +R Sbjct: 201 ARLPKLPVAFANSGGSFLDKTYHFDLARPGVALYGVGPKSE----IIPVLTLSARVIQVR 256 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YGG +A A+GYADG+ +LS G F Sbjct: 257 DIDKGAAVGYGGAYIAEGPMRVATIAVGYADGWFRSLSN-----------KGAAFFGDTR 305 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD D++ +++G +++ GP +L+DVA T Y++L +G R Sbjct: 306 LPIIGRVSMDSITLDVSALPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNR 365 Query: 365 YAKFY 369 YA+ Y Sbjct: 366 YARVY 370 >gi|228914698|ref|ZP_04078307.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845017|gb|EEM90059.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 408 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ + V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|81301010|ref|YP_401218.1| alanine racemase [Synechococcus elongatus PCC 7942] gi|81169891|gb|ABB58231.1| alanine racemase [Synechococcus elongatus PCC 7942] Length = 406 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 108/379 (28%), Positives = 165/379 (43%), Gaps = 25/379 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S + +++D A+ N + L+ + AVVK +AYG G IA + AG Sbjct: 23 SYQRAWVEVDQGAIAANTRQIRQFLAPSCELMAVVKADAYGHGAVAIASTVLGAGATALG 82 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT--FYSKLMSCG 119 V ++ EGV+LR A I +L IH E I S P+ L G Sbjct: 83 VATIPEGVRLREAGITAPILLLGSIHSPDEVQAIAHWQIQPSLSTPKQALICAEVLDRLG 142 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 S P L++DTG +RLG Q A++F QL+ + SH A AD P Q Sbjct: 143 QSLPVHLKLDTGMSRLGAPWQTAVEFLQLVHGLPSLQLASLYSHFATADSPDRAPLQQQH 202 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPM 232 F I+ + + +A+S+ LL + H+ R G++LYG + + Sbjct: 203 AAFEQAIAQIQAEGLPVPKLHIANSAATLLDSSLHYDQVRVGLALYGLYPAPHLGDRLSL 262 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ +AR+ + AG+ VSYG + R++ IAV IGYADG P LS Sbjct: 263 YPALSVKARVTHVTTLPAGQGVSYGHRYVTQRETPIAVVGIGYADGVPRALSNQM----- 317 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + +G +P +G ITMD M DI+ + GD + + G I DD A Sbjct: 318 ------EVLYRGQRLPQIGAITMDQMMIDISAMPQLAPGDVVTLLGRSGSEQITADDWAD 371 Query: 349 ASGTTNYDLLVRIGTRYAK 367 + T ++++L R + Sbjct: 372 RANTISWEILCGFKDRLPR 390 >gi|153871849|ref|ZP_02000914.1| alanine racemase 2, PLP-binding, catabolic [Beggiatoa sp. PS] gi|152071686|gb|EDN69087.1| alanine racemase 2, PLP-binding, catabolic [Beggiatoa sp. PS] Length = 357 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 107/367 (29%), Positives = 178/367 (48%), Gaps = 19/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ID AL+ N + + N+R AV+K N YG G ++A A V F V+ Sbjct: 3 RPAHAFIDTAALRGNVQRVKVCAPNSRIMAVIKANGYGHGAIRMAQT-IEASVNAFAVSC 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR I +L G P + II D +L V+ + Q Sbjct: 62 LEEALQLREAEITIPIVLLEGFFHPNELPIIADQDLHIVVHTHKQFEDL-LKAPLEKPIT 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG +RLG + + ++++ Q ++SHL+CADD + Q + F Sbjct: 121 IWLKVDTGMHRLGFAPSDIEPIYKLLKHSQQIAQPIRLMSHLSCADDRQDEITEQQTQIF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239 ++ + +EASLA+S+G+L PN H RPGI LYG + + K +Q+V+ + Sbjct: 181 MA-LARHLNLEASLANSAGVLGWPNTHADWVRPGIMLYGVSPFLKSAGKREGLQSVMQLQ 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +++ GE + YG + + L+ V AIGYADGYP G Sbjct: 240 STLISVKRHRKGEAIGYGATWRCPQTMLVGVVAIGYADGYPRHA-----------PSGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G VP++G+++MDM D+ + +GD + ++G + ++++A +GT Y+LL Sbjct: 289 VLVNGRRVPLVGRVSMDMITVDLRSQPNARIGDPVVLWGRHLPVEEIANDAGTIAYELLC 348 Query: 360 RIGTRYA 366 + R Sbjct: 349 HVNHRVK 355 >gi|145635716|ref|ZP_01791411.1| alanine racemase [Haemophilus influenzae PittAA] gi|145639886|ref|ZP_01795486.1| alanine racemase [Haemophilus influenzae PittII] gi|229845613|ref|ZP_04465739.1| alanine racemase [Haemophilus influenzae 6P18H1] gi|145267039|gb|EDK07048.1| alanine racemase [Haemophilus influenzae PittAA] gi|145270977|gb|EDK10894.1| alanine racemase [Haemophilus influenzae PittII] gi|229811480|gb|EEP47183.1| alanine racemase [Haemophilus influenzae 6P18H1] gi|309751068|gb|ADO81052.1| Alanine racemase [Haemophilus influenzae R2866] Length = 360 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 ++ +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPIY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ +GD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLIGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|320009058|gb|ADW03908.1| alanine racemase [Streptomyces flavogriseus ATCC 33331] Length = 411 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 165/380 (43%), Gaps = 29/380 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N + A + A+ AVVK +AYG G A A AG + Sbjct: 35 RARAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGAVPCARAAQEAGASWLGTATP 94 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR + R+ G + + ++ +S + + G+ Sbjct: 95 QEALALRAAGIRGRVMCWLWTPGGPWREAVEADIDVSVSGMWALDEVVAAATEAGIPARI 154 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLER 181 L+ DTG R G + + + + + +++ + SH ACAD+P + QL+ Sbjct: 155 QLKADTGLGRNGCQPADWPELVSAARAAEEAGVLRVTGLWSHFACADEPGHPSIAAQLDV 214 Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 FR +++ + +A+S L P HF L R GI++YG + + Sbjct: 215 FRDMVAYAEKEGVRPEVRHIANSPATLTVPESHFDLVRTGIAMYGISPSPELGTSADFGL 274 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+T A + L+++ G +SYG ++ +A+ +GYADG P SG Sbjct: 275 RPVMTLAASVALVKQVPPGHGISYGHHYTTAAETTLALVPVGYADGIPRHASGR------ 328 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G + G + I G++ MD + D+ + +E G +FGP + +D A Sbjct: 329 -----GPVLVGGAVRRIAGRVAMDQFVVDLGGEV-LEAGAEAVLFGPGDRGEPSAEDWAR 382 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 A+ T Y+++ RIG R + Sbjct: 383 AADTIAYEIVTRIGVRVPRV 402 >gi|58580317|ref|YP_199333.1| alanine racemase [Xanthomonas oryzae pv. oryzae KACC10331] gi|81311987|sp|Q5H522|ALR_XANOR RecName: Full=Alanine racemase gi|58424911|gb|AAW73948.1| alanine racemase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 366 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 164/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL++N+ L G ++ AVVK +AYG G A AL F V Sbjct: 2 RPAQASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVPCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LTAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 IIL+R GE V YG + R + + V A+GYADGYP G Sbjct: 239 IILVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD ++G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRLPRTY 354 >gi|149183253|ref|ZP_01861697.1| alanine racemase [Bacillus sp. SG-1] gi|148849049|gb|EDL63255.1| alanine racemase [Bacillus sp. SG-1] Length = 394 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 155/386 (40%), Gaps = 31/386 (8%) Query: 1 MHSN----EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNA 55 M + ++IDL L N H++ AVVK NAYG G + A N Sbjct: 1 MITQTRFFRDTWVEIDLDNLYKNVHNIKQHLPEGVTMFAVVKANAYGHGDVQTAHTALNG 60 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SK 114 G V ++E + LR +A I VL + ++ + L Sbjct: 61 GAGGLAVAFLDEAISLRENGIEAPILVLGATRAEDAYLAMSHDISLTVFDYAWLESAREY 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 L ++ DTG R+G+ + + QL + +H A AD+ + Sbjct: 121 LEKEDGKLNLHIKCDTGMGRIGVRNSADLQKVEKFIRQESKFQLEGVFTHFATADELDTE 180 Query: 174 VNSVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK--- 228 QLE F ++S + +S+ L P HF R GI++YG + + Sbjct: 181 YFERQLEVFERMLSSLTERPKYIHSSNSAATLSHPKSHFNAVRAGIAMYGLSPSVEMKAV 240 Query: 229 -SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 P++ V + +RI+ +++ AGE VSYG + ++ I IGYADG+ L G Sbjct: 241 LPFPLEQVFSLHSRIVQVKELRAGEKVSYGATYETKKNEWIGTLPIGYADGWLRKLQGQ- 299 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 + + G PI+G+I MD M + + ++ G + + G I + Sbjct: 300 -----------EVLVDGKRAPIVGRICMDQCMISLPE--EVQPGTKVTLIGRQDGDFISM 346 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 D++A T NY++ I R + Y Sbjct: 347 DEIAAKLDTINYEIPCIISNRVPRIY 372 >gi|163940135|ref|YP_001645019.1| alanine racemase [Bacillus weihenstephanensis KBAB4] gi|163862332|gb|ABY43391.1| alanine racemase [Bacillus weihenstephanensis KBAB4] Length = 398 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 102/385 (26%), Positives = 163/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSN--EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ N +++DL AL+ N+ VVK NAYG G IA A+ AG Sbjct: 1 MNVNYGRHTIIEVDLNALQRNFQQYKQAIPFGTAIMTVVKANAYGHGAVPIAKAVIEAGT 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 V V+EG++LR I + +L + ++ L ++ Sbjct: 61 SHLAVAFVDEGIELREAGITVPILIFGYTPYEAIVDAITYDLSMTVYTIEDLHAIEEVAS 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG +R+GL L E F K Q+ + +H ACAD+ Sbjct: 121 QMEKNAYIHIKIDTGMSRIGLQLNEVTLFLQTLKCTKYIQVEGMYTHFACADERDKAYTL 180 Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 +Q E F+ +S + + +S+ + + R GI+LYG + + Sbjct: 181 MQQEVFQKAVSKAEELQIVIPWIHANNSAATIDMRETKGNMVRLGIALYGLYPSADVNQE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +Q ++T ++++ I+K G VSYG T + IA +GYADG LS Sbjct: 241 AISLQPILTFKSKVAHIKKVKKGNGVSYGATYTATGEEWIATIPVGYADGVSRQLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G IK VPI+G+I MD M D+T + I VGD + +G I +D Sbjct: 298 --------KGFVLIKDVKVPIIGRICMDQLMLDVTKIMPIHVGDEVVFYGNQGEESISVD 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 VA T NY++ + R + Y Sbjct: 350 CVADTLSTINYEITCMLSRRIPRIY 374 >gi|56751905|ref|YP_172606.1| alanine racemase [Synechococcus elongatus PCC 6301] gi|56686864|dbj|BAD80086.1| alanine racemase [Synechococcus elongatus PCC 6301] Length = 406 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 108/379 (28%), Positives = 165/379 (43%), Gaps = 25/379 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S + +++D A+ N + L+ + AVVK +AYG G IA + AG Sbjct: 23 SYQRAWVEVDQGAIAANTRQIRQFLAPSCELMAVVKADAYGHGAVAIASTVLGAGATALG 82 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT--FYSKLMSCG 119 V ++ EGV+LR A I +L IH E I S P+ L G Sbjct: 83 VATIPEGVRLREAGITAPILLLGSIHSPDEVQAIAHWQIQPSLSTPKQALICAEALDRLG 142 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 S P L++DTG +RLG Q A++F QL+ + SH A AD P Q Sbjct: 143 QSLPVHLKLDTGMSRLGAPWQTAVEFLQLVHGLPSLQLASLYSHFATADSPDRAPLQQQH 202 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPM 232 F I+ + + +A+S+ LL + H+ R G++LYG + + Sbjct: 203 AAFEQAIAQIQAEGLPVPKLHIANSAATLLDSSLHYDQVRVGLALYGLYPAPHLGDRLSL 262 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ +AR+ + AG+ VSYG + R++ IAV IGYADG P LS Sbjct: 263 YPALSVKARVTHVTTLPAGQGVSYGHRYVTQRETPIAVVGIGYADGVPRALSNQM----- 317 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + +G +P +G ITMD M DI+ + GD + + G I DD A Sbjct: 318 ------EVLYRGQRLPQIGAITMDQMMIDISAMPQLAPGDVVTLLGRSGSEQITADDWAD 371 Query: 349 ASGTTNYDLLVRIGTRYAK 367 + T ++++L R + Sbjct: 372 RANTISWEILCGFKDRLPR 390 >gi|187736490|ref|YP_001878602.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835] gi|187426542|gb|ACD05821.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835] Length = 368 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 164/375 (43%), Gaps = 17/375 (4%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S +IDL A+++N + + + VVK AYG G E++ L + G+ F Sbjct: 4 TSPPRAWAEIDLGAIRHNLNVVKQAAKGEYYMPVVKAGAYGHGLEQVCRTLDSEGIAFFG 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V +V E ++ + R ++L P + + I IS++ + Y+ L G Sbjct: 64 VANVGEARRISQAGCRTRPYILGPAFPEEREEIVLNGWRSFISTMEEAAHYNSLARLYGK 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P L VDTG R G + + L + +HL CAD+ + Q+ Sbjct: 124 TLPIHLSVDTGMGRGGFLPDQLEELLSRLGELDSLHLEGLGAHLPCADEDR-EITLRQIS 182 Query: 181 RFRTLISHYKGI----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTV 235 RF + + + LA+S+ L + RPG+ LYG + + + Sbjct: 183 RFEQMAARIREKLPLKYCHLANSAASLDYEIPSNNMCRPGLVLYGFSPIPSPWAAQLKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R+ ++R G +SYGG + +A IGYADGY +L Sbjct: 243 MALFSRLTVVRTLPEGHGISYGGTFVTDHPTRVATVGIGYADGYLRSL----------AH 292 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + + G P+LG++TMD M D++ + E G +I GP I + ++A +GT ++ Sbjct: 293 KGARVMVDGVSCPLLGRVTMDQIMVDVSRAPHAEPGMTAEIMGPHIPVTELAEKAGTISW 352 Query: 356 DLLVRIGTRYAKFYT 370 ++ IG R + YT Sbjct: 353 EIFTGIGPRVPRHYT 367 >gi|299133691|ref|ZP_07026885.1| alanine racemase [Afipia sp. 1NLS2] gi|298591527|gb|EFI51728.1| alanine racemase [Afipia sp. 1NLS2] Length = 396 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 195/364 (53%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW ++ + + A +AVVK +AYG G + L + G + FFV +++E Sbjct: 23 LTIDLDALATNWKALESRAVPAECSAVVKADAYGCGLTPVTRKLVSIGCKTFFVATLDEA 82 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127 + R P+A I+VL G + PVI + +L + + + G + ALQ Sbjct: 83 KRAREAAPKAAIYVLDGFFANCGDDFAKIDCRPVIGDLNELAEWDAFRRTRGWTGLAALQ 142 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG + EA ++L++SHLACA+D S+ +N+ QL FR++ S Sbjct: 143 IDTGMNRLGFTPDEARGLVPRIKQAD-HGIALVMSHLACAEDMSNAMNARQLAAFRSVAS 201 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + GI ASLA+SSGI LG ++H + RPG +LYG +PMQ VV + RI IR Sbjct: 202 EFSGITASLANSSGIFLGSHFHMDMVRPGAALYGVNPTPEADNPMQPVVGLKVRIAQIRN 261 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R + +A+ + GYADGY SG++ S + + G Sbjct: 262 VPKGETVGYGALWHAKRPTRLAIVSAGYADGYFRAASGIEGTRS------AQAIVAGQRC 315 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI+G+I+MD+ DITD I G +I + G + LD++ GT Y++L +G RY Sbjct: 316 PIVGRISMDLMAIDITDVPHGGIRRGHFITLIGEGLTLDELGHHFGTIGYEVLTSLGRRY 375 Query: 366 AKFY 369 A+ Y Sbjct: 376 ARDY 379 >gi|157148050|ref|YP_001455368.1| alanine racemase [Citrobacter koseri ATCC BAA-895] gi|157085255|gb|ABV14933.1| hypothetical protein CKO_03857 [Citrobacter koseri ATCC BAA-895] Length = 359 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFEATDLPVISAQHLHTAVHNEEQLAALEAAGLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEKAEAFYQRLTQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLENQSTGEDFGCQPVMSLISS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWISERDTCLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G V I+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVTIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|58257632|dbj|BAD88777.1| alanine racemase [synthetic construct] Length = 359 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 165/368 (44%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEGQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGFPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|307823471|ref|ZP_07653700.1| alanine racemase [Methylobacter tundripaludum SV96] gi|307735456|gb|EFO06304.1| alanine racemase [Methylobacter tundripaludum SV96] Length = 362 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 171/362 (47%), Gaps = 20/362 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++L A+++N + + + +A+ AV+K N YG G +IA AL F V V+EG Sbjct: 7 AVVNLDAVQHNLSKVRSCAPDAKVMAVIKANGYGHGMLRIAEALQQ--ADAFAVARVDEG 64 Query: 69 VKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 ++LR + RI VL G + + L V+ S+ QL + G L+ Sbjct: 65 IRLRKAGFKHRIAVLEGFTCAEELDELLHYQLDAVVHSLTQLEIFEAETKSGTCAV-WLK 123 Query: 128 VDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +D+G NRLG +E + + Q +++H A ADD + Q+ F I Sbjct: 124 LDSGMNRLGFKAKEFDSVYQRLTQCALVKQPISLMTHFASADDINDDKTLRQINLFNETI 183 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARII 243 S Y G E S+A+S+GIL RPG+ L+G + + + ++ V+ +R+I Sbjct: 184 SGYSG-ERSMANSAGILGWEQSLTDWVRPGVMLHGISPFPDSTGRQLGLRPVMELHSRLI 242 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +++ G+ V YGG + + + V AIGY DGYP +G + Sbjct: 243 AVKQIEVGDTVGYGGSWICEKPTTLGVVAIGYGDGYPR-----------YAKVGTPVLVN 291 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G VP++G+++MDM D+ + GD + ++G + ++++A + T Y L+ + Sbjct: 292 GRRVPLIGRVSMDMITVDLETEGHAKPGDLVTLWGEGLPVEEIARCADTIPYTLVCGVTQ 351 Query: 364 RY 365 R Sbjct: 352 RV 353 >gi|281181122|dbj|BAI57452.1| alanine racemase [Escherichia coli SE15] Length = 359 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + + + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEANLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + G + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDKAGAPVILWGEGLPVERIAEMTKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|114331518|ref|YP_747740.1| alanine racemase [Nitrosomonas eutropha C91] gi|122313683|sp|Q0AFV7|ALR_NITEC RecName: Full=Alanine racemase gi|114308532|gb|ABI59775.1| alanine racemase [Nitrosomonas eutropha C91] Length = 361 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 161/367 (43%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R ID TAL++N + + + AR AVVK +AYG G + AL F V Sbjct: 3 RPIRALIDCTALQHNLSVVRSHTRQARIMAVVKADAYGHGLLRTTQALNT--ADGFAVLE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E ++LR + +L G +E D + + + Sbjct: 61 LEAAIQLREAGFNQPVLLLEGFFSAEELEAIDHYQLSTVIHSHEQLSLLLAHRKTGKPDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183 L+++TG NRLG +E + + +++H +CADD + QL++F Sbjct: 121 YLKINTGMNRLGFRPEEESYVFNRIRQWRSDTSITLMTHFSCADDALEADQVNQQLDQFA 180 Query: 184 TLIS-HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 L + +LA+S+ IL P H RPGI LYG + +K ++ V+T Sbjct: 181 ALHDVKENNLPQTLANSAAILRYPGTHADWVRPGIVLYGASPLPDKTGIELGLRPVMTLT 240 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++II +++ + V YGGQ + I V A GYADGYP G Sbjct: 241 SQIIAVQQLDPSDRVGYGGQFIANQPMRIGVVAAGYADGYPRHA-----------PTGTP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+I+MDM D+ VG + ++G + +++VA ++ T +Y+LL Sbjct: 290 VLVNGQRTRLVGRISMDMLTVDLNGISEAGVGSPVTLWGEGLPVEEVAKSAQTISYELLT 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALSPRVP 356 >gi|254690758|ref|ZP_05154012.1| Alr, alanine racemase [Brucella abortus bv. 6 str. 870] gi|256255941|ref|ZP_05461477.1| Alr, alanine racemase [Brucella abortus bv. 9 str. C68] gi|260756329|ref|ZP_05868677.1| alanine racemase [Brucella abortus bv. 6 str. 870] gi|260882153|ref|ZP_05893767.1| alanine racemase [Brucella abortus bv. 9 str. C68] gi|297249298|ref|ZP_06932999.1| alanine racemase [Brucella abortus bv. 5 str. B3196] gi|260676437|gb|EEX63258.1| alanine racemase [Brucella abortus bv. 6 str. 870] gi|260871681|gb|EEX78750.1| alanine racemase [Brucella abortus bv. 9 str. C68] gi|297173167|gb|EFH32531.1| alanine racemase [Brucella abortus bv. 5 str. B3196] Length = 399 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + VN+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMMALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|254751429|ref|ZP_05203466.1| alanine racemase [Bacillus anthracis str. Vollum] gi|254758301|ref|ZP_05210328.1| alanine racemase [Bacillus anthracis str. Australia 94] Length = 408 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ + V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|78224104|ref|YP_385851.1| alanine racemase [Geobacter metallireducens GS-15] gi|123571083|sp|Q39RJ8|ALR_GEOMG RecName: Full=Alanine racemase gi|78195359|gb|ABB33126.1| alanine racemase [Geobacter metallireducens GS-15] Length = 379 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 168/386 (43%), Gaps = 29/386 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S +IDL AL++N+ + A+VK +AYG G I+ L + GV Sbjct: 1 MDS-RPTIAEIDLAALRHNFEQVQRAVPAGCGILAIVKADAYGHGFMDISRELESLGVTA 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118 F V + EG++LR + +L G++PGQE+ NL + S+ Q + Sbjct: 60 FGVAFLAEGIQLRKSGIDRPVLILGGVYPGQERKCVGFNLSTAVFSLEQARVLNDTAARL 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VN 175 +++DTG RLG++ EA F K +L IISH A AD+ + Sbjct: 120 YRKAKIHVKIDTGMGRLGVAAAEAPAFFRELREMKSLELEGIISHFASADELDDDGRRFS 179 Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q F ++ + + +A+S+ L RPGI LYG + Sbjct: 180 DRQAAVFAQSVAEARSLGLDPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALPSGDFEG 239 Query: 231 PM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 M + ++ ++ + +++ G +SY + LIA +GYADGY L+ Sbjct: 240 KMALRPIMRLQSTVAMLKWVEPGTSISYARRYTAPDRRLIASVPVGYADGYSRALTNR-- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKL 343 G+ I+G P++G + MD M D+T + VGD + + G D ++ Sbjct: 298 ---------GEVLIRGTRAPVVGTVCMDWIMIDVTSVPGVAVGDEVTLLGCDRQGHCVRA 348 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +++A +GT Y++ I R + Y Sbjct: 349 EELASWAGTIPYEIFCGISKRVPRVY 374 >gi|260167680|ref|ZP_05754491.1| Alr, alanine racemase [Brucella sp. F5/99] gi|261757116|ref|ZP_06000825.1| alanine racemase [Brucella sp. F5/99] gi|261737100|gb|EEY25096.1| alanine racemase [Brucella sp. F5/99] Length = 399 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|254703242|ref|ZP_05165070.1| Alr, alanine racemase [Brucella suis bv. 3 str. 686] gi|260567824|ref|ZP_05838293.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261753873|ref|ZP_05997582.1| alanine racemase [Brucella suis bv. 3 str. 686] gi|260154489|gb|EEW89570.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261743626|gb|EEY31552.1| alanine racemase [Brucella suis bv. 3 str. 686] Length = 399 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|225629379|ref|ZP_03787412.1| alanine racemase [Brucella ceti str. Cudo] gi|254705613|ref|ZP_05167441.1| Alr, alanine racemase [Brucella pinnipedialis M163/99/10] gi|256029226|ref|ZP_05442840.1| Alr, alanine racemase [Brucella pinnipedialis M292/94/1] gi|261313023|ref|ZP_05952220.1| alanine racemase [Brucella pinnipedialis M163/99/10] gi|265986214|ref|ZP_06098771.1| alanine racemase [Brucella pinnipedialis M292/94/1] gi|225615875|gb|EEH12924.1| alanine racemase [Brucella ceti str. Cudo] gi|261302049|gb|EEY05546.1| alanine racemase [Brucella pinnipedialis M163/99/10] gi|264658411|gb|EEZ28672.1| alanine racemase [Brucella pinnipedialis M292/94/1] Length = 399 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|23500650|ref|NP_700090.1| alanine racemase [Brucella suis 1330] gi|161620975|ref|YP_001594861.1| alanine racemase [Brucella canis ATCC 23365] gi|31076598|sp|Q8FVC1|ALR_BRUSU RecName: Full=Alanine racemase gi|189027529|sp|A9MCK3|ALR_BRUC2 RecName: Full=Alanine racemase gi|23464295|gb|AAN34095.1| alanine racemase [Brucella suis 1330] gi|161337786|gb|ABX64090.1| alanine racemase [Brucella canis ATCC 23365] Length = 396 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|197123899|ref|YP_002135850.1| alanine racemase [Anaeromyxobacter sp. K] gi|196173748|gb|ACG74721.1| alanine racemase [Anaeromyxobacter sp. K] Length = 395 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 155/373 (41%), Gaps = 19/373 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL +N + A + AR AVVK NAYG G A AG V Sbjct: 14 RPVWAEIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVC 73 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 V+E +LR +A + V+ + L P + ++ + ++ G P Sbjct: 74 VDEAEELRRAGVEAPLLVIGNTPASDAARVVALRLRPAVGAMDLVEALSAEARRRGAEVP 133 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NR GLS + + ++ + +H A A++ Q E R Sbjct: 134 IHLELESGLNRHGLSPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLR 193 Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240 + E A+S+ ILL + R G+SLYG ++ V++ A Sbjct: 194 ETSRRLPWVPERHCAASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDADLRPVMSLRA 253 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+ + G V YG R + +A+ GYADGY + + Sbjct: 254 RVARVSDVDRGATVGYGRTWAANRPTRVALVMCGYADGYRRSFGNR-----------TQV 302 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 + G P++G++ MDM M D+T + GD + + G D + DD+A + T +++ Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAAGDVVTLIGRDGDERVDADDLATIADTISWE 362 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 363 ILAGISARVPRLY 375 >gi|83269232|ref|YP_418523.1| alanine racemase [Brucella melitensis biovar Abortus 2308] gi|20531982|sp|Q8YD03|ALR_BRUME RecName: Full=Alanine racemase gi|123545437|sp|Q2YIU9|ALR_BRUA2 RecName: Full=Alanine racemase gi|82939506|emb|CAJ12478.1| Alanine racemase:Protein of unknown function UPF0001:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] Length = 396 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + VN+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|17988719|ref|NP_541352.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M] gi|62317251|ref|YP_223104.1| alanine racemase [Brucella abortus bv. 1 str. 9-941] gi|189022512|ref|YP_001932253.1| Alr, alanine racemase [Brucella abortus S19] gi|237816811|ref|ZP_04595803.1| alanine racemase [Brucella abortus str. 2308 A] gi|254695937|ref|ZP_05157765.1| Alr, alanine racemase [Brucella abortus bv. 3 str. Tulya] gi|254698537|ref|ZP_05160365.1| Alr, alanine racemase [Brucella abortus bv. 2 str. 86/8/59] gi|254731984|ref|ZP_05190562.1| Alr, alanine racemase [Brucella abortus bv. 4 str. 292] gi|256043789|ref|ZP_05446711.1| Alr, alanine racemase [Brucella melitensis bv. 1 str. Rev.1] gi|256111166|ref|ZP_05452202.1| Alr, alanine racemase [Brucella melitensis bv. 3 str. Ether] gi|260544489|ref|ZP_05820310.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260564974|ref|ZP_05835459.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260759757|ref|ZP_05872105.1| alanine racemase [Brucella abortus bv. 4 str. 292] gi|260762996|ref|ZP_05875328.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59] gi|261216365|ref|ZP_05930646.1| alanine racemase [Brucella abortus bv. 3 str. Tulya] gi|265990216|ref|ZP_06102773.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1] gi|265992677|ref|ZP_06105234.1| alanine racemase [Brucella melitensis bv. 3 str. Ether] gi|17984530|gb|AAL53616.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M] gi|62197444|gb|AAX75743.1| Alr, alanine racemase [Brucella abortus bv. 1 str. 9-941] gi|189021086|gb|ACD73807.1| Alr, alanine racemase [Brucella abortus S19] gi|237787624|gb|EEP61840.1| alanine racemase [Brucella abortus str. 2308 A] gi|260097760|gb|EEW81634.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260152617|gb|EEW87710.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260670075|gb|EEX57015.1| alanine racemase [Brucella abortus bv. 4 str. 292] gi|260673417|gb|EEX60238.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59] gi|260917972|gb|EEX84833.1| alanine racemase [Brucella abortus bv. 3 str. Tulya] gi|262763547|gb|EEZ09579.1| alanine racemase [Brucella melitensis bv. 3 str. Ether] gi|263000885|gb|EEZ13575.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1] Length = 399 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + VN+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|319898680|ref|YP_004158773.1| Alanine racemase [Bartonella clarridgeiae 73] gi|319402644|emb|CBI76189.1| Alanine racemase [Bartonella clarridgeiae 73] Length = 374 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ A+ N+ ++ +AVVK +AYGLG EKIAPALY AG + FF+ ++E Sbjct: 20 ATIDIGAIVANYKTLARRVAPIECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEA 79 Query: 69 VKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126 ++L+ PQ V L GI E+ + ++PV++S + + G P + Sbjct: 80 LQLKAILPQNVTIVLLNGIPLTAEEFVAQAGIVPVLNSWHAIESWQMHCQKNGKKFPAVV 139 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E + + IISHLA DD + N Q +T + Sbjct: 140 QIDTNMNRLGLDQEELQWLIQTPTLFETADIKYIISHLANGDDITHTSNCAQKNAMKTAL 199 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +ASLA+S GI LGP+++F L RPGI+LYG +++V+ +A++I R Sbjct: 200 AQLPACKASLANSGGIFLGPDFYFDLVRPGIALYGIDPHGKHPTSLKSVLKLKAQVIQSR 259 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG + S++ +IGYADG+ LS G + GY Sbjct: 260 YTEAGTPVGYGGSFITQQPSILTTISIGYADGWLRNLSN-----------KGSVYFNGYK 308 Query: 307 VPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+I+MD + D T+ + GD++++ G +++VA +GT Y++L +G+R Sbjct: 309 LPIIGQISMDSIIVDATNLKHKKPKRGDWVELIGIHQTIENVAADAGTIPYEILTSLGSR 368 Query: 365 YAKFY 369 Y + Y Sbjct: 369 YKRIY 373 >gi|65319386|ref|ZP_00392345.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012] Length = 408 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ + V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLXKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 ++ K + + +S+G + N + R GI +YG +H + Q ++ Sbjct: 208 VNTAKELGIHIPYIHSSNSAGSMEPSNTFQNMVRVGIGIYGMYPSKEVNHSVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G +I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEENIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|138893881|ref|YP_001124334.1| alanine racemase [Geobacillus thermodenitrificans NG80-2] gi|196250545|ref|ZP_03149235.1| alanine racemase [Geobacillus sp. G11MC16] gi|134265394|gb|ABO65589.1| Alanine racemase [Geobacillus thermodenitrificans NG80-2] gi|196209894|gb|EDY04663.1| alanine racemase [Geobacillus sp. G11MC16] Length = 384 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 154/378 (40%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL A+ +N ++ L + AVVK NAYG G ++A AG V Sbjct: 5 HRDTWAEIDLDAIYDNVANLRRFLPDGTQVMAVVKANAYGHGDAQVATTALEAGASYLAV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR A I VL P ++ + + L + + + Sbjct: 65 AILDEALALRQKGINAPILVLGASRPADVELAARHRITLTVFRADWLEEAASIYNGSTPV 124 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG RLG+ +E T L + +H A AD+ ++ S Q R Sbjct: 125 HLHLKMDTGMGRLGVKDEEETKRITTLIDRHPSFILEGVYTHFATADEVNTDYLSYQYRR 184 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ +L P F + R GIS+YG + + ++ Sbjct: 185 FLHMLEWLPSRPPIVHCANSATVLRFPERAFNMARFGISMYGLAPSPSIKPLLPYELKEA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ +++ GE VSYG + I IGYADG+ L Sbjct: 245 FSLHSRLVHVKRLQPGEKVSYGATYTAQEEEWIGTLPIGYADGWLRRLQHF--------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + + L + G + + G I +DDVA Sbjct: 296 ---HVLVNGQKAPIVGRICMDQCMIRLPEPLPV--GTKVTLIGRQGDEFISVDDVARYLE 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 351 TINYEVPCTISYRVPRIF 368 >gi|294497061|ref|YP_003560761.1| alanine racemase [Bacillus megaterium QM B1551] gi|294346998|gb|ADE67327.1| alanine racemase [Bacillus megaterium QM B1551] Length = 396 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 158/381 (41%), Gaps = 29/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +ID+ A+ N + + L + AVVK NAYG G +++A AG V Sbjct: 16 RETWAEIDVEAIFQNVNHVRELIPGHKTLMAVVKANAYGHGDKEVAEIALQAGADMLAVA 75 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + I VL + + + ++ S + + ++ Sbjct: 76 FLDEAIALRKKGIKESILVLGAVPTLHIQTALEWDVTVTAYSKAWIEEAASILDENSQLH 135 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG RLG+ +E L T L + +H A AD+ +S Q F Sbjct: 136 MHLKIDTGMGRLGVRTKEELHETMKIIASHSGFVLDGVFTHFATADELNSSYFEEQYTFF 195 Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 ++ ++ A+S+ +L P F R GIS+YG + P++ Sbjct: 196 EEMVRIVKEYNFTPPMIHCANSAALLRRPKDIFNGVRLGISMYGLSPSEELKEVLPIPLK 255 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + +RI+ ++K G +SYG + D IA +GYADG+ LS Sbjct: 256 QAFSLHSRIVHVKKVKKGSHISYGATYEAKEDEWIATIPVGYADGWIRKLSNF------- 308 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 + + G VPI+G+I MD M + ++G + G +I +D+VA Sbjct: 309 -----EVLVDGVKVPIVGRICMDQLMIKLPKMY--KMGTKVTFIGKQKGAEITIDEVAKH 361 Query: 350 SGTTNYDLLVRIGTRYAKFYT 370 T NY++ + R + YT Sbjct: 362 LETINYEIPCMVAARVPRVYT 382 >gi|322834774|ref|YP_004214801.1| alanine racemase [Rahnella sp. Y9602] gi|321169975|gb|ADW75674.1| alanine racemase [Rahnella sp. Y9602] Length = 359 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 20/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + L+ +R AVVK NAYG G + +L + + V+ + Sbjct: 4 ATAVIDRRALRHNLQRVRHLAPQSRLVAVVKANAYGHGLLETVHSLQD--ADYYGVSRLS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G + ++ + L + S+ QL Sbjct: 62 EALMLRKAGVVKPILLLEGFFSASELPLLIEHQLDTAVHSLEQLDALES-ADLARPLNVW 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +RLG+ +A F S K + Q ++SH AD+P S QL F Sbjct: 121 LKIDTGMHRLGVHPAQADAFYQRLSACKNVVQPVNMMSHFCRADEPESDATPKQLNCFNE 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEAR 241 G + S+A+S GILL P H L RPGI LYG + +Q V+T + Sbjct: 181 FAEGKPG-QKSIAASGGILLWPESHMNLVRPGIILYGVSPMETGTASDFGLQPVMTLTSS 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG RD+ + V A+GY DGYP + G Sbjct: 240 LIAVREHAAGEPVGYGSTWVSNRDTRLGVVAMGYGDGYPRSAPN-----------GTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VP+ G+++MDM D+ + +VGD + +G + ++ +A A+G + Y+L+ ++ Sbjct: 289 VNGREVPVAGRVSMDMITVDLGPDATDKVGDEVIFWGGKLPVERIAQATGISAYELITQL 348 Query: 362 GTRYAKFY 369 R A+ Y Sbjct: 349 SERVARVY 356 >gi|148379617|ref|YP_001254158.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|153933955|ref|YP_001383998.1| alanine racemase [Clostridium botulinum A str. ATCC 19397] gi|153934941|ref|YP_001387541.1| alanine racemase [Clostridium botulinum A str. Hall] gi|168180317|ref|ZP_02614981.1| alanine racemase [Clostridium botulinum NCTC 2916] gi|226948986|ref|YP_002804077.1| alanine racemase [Clostridium botulinum A2 str. Kyoto] gi|148289101|emb|CAL83195.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|152929999|gb|ABS35499.1| alanine racemase [Clostridium botulinum A str. ATCC 19397] gi|152930855|gb|ABS36354.1| alanine racemase [Clostridium botulinum A str. Hall] gi|182668797|gb|EDT80775.1| alanine racemase [Clostridium botulinum NCTC 2916] gi|226840935|gb|ACO83601.1| alanine racemase [Clostridium botulinum A2 str. Kyoto] Length = 389 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 162/384 (42%), Gaps = 27/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 3 RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V + E +LR I +L P + I D N+ PV+ S SK S Sbjct: 63 VACLSEATELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDCANQLSKAASLKNR 122 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG E+L+ + ++ + SH + +D+ + Q Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182 Query: 180 ERF----RTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 + F + LI I +S+ I+ P+ + R GI LYG + ++ Sbjct: 183 KIFQNFRKKLIEMNMKIPIYHMSNSAAIIDLPSTYLDGVRAGIILYGYYPSMEVNKENLH 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T +A I+ I+ +G+ V Y + K R S IA+ +GY DGY LS Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345 GK I G PI+G I MD M D+TD ++VGD + I G D +D Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A G T+ +++ I R + Y Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375 >gi|146283965|ref|YP_001174118.1| alanine racemase, catabolic [Pseudomonas stutzeri A1501] gi|166969424|sp|A4VQM5|ALR_PSEU5 RecName: Full=Alanine racemase gi|145572170|gb|ABP81276.1| alanine racemase, catabolic [Pseudomonas stutzeri A1501] Length = 358 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 165/368 (44%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DLTAL++N+ + + AVVK NAYG G + AL F V Sbjct: 2 RPLVATVDLTALRHNYLLAKQCAPQRKAFAVVKANAYGHGAPEAVTALREI-ADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE +R P+ARI +L G E + + + + + Sbjct: 61 LEEAEVIRGCAPEARILLLEGCFEPSEYLRAAELGLDIAVQDARQADWLLAADLARPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG S+ + +ISH ACAD+ + QLER+ Sbjct: 121 WLKLDSGMHRLGFSVDGLRECHARLKGAAQVGELNLISHFACADERGHALTETQLERYAE 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ SLA+S+ +L P H RPGI LYG T S ++ V+T Sbjct: 181 LLELPFE-HCSLANSAAVLTLPQAHMAWIRPGIMLYGATPFAELSARELGLKPVMTLTGA 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R GE V YG R S I + GYADGYP + G Sbjct: 240 LIAVRDVPVGESVGYGASWVAQRPSRIGTVSCGYADGYPR-----------TAPSGTSVV 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G VP+ G+++MDM D+TD ++GD ++++G + +D++A A GT Y+LL ++ Sbjct: 289 IHGQRVPLAGRVSMDMLAVDLTDLPQAQLGDAVELWGAQMPIDELAQACGTIGYELLTKV 348 Query: 362 GTRYAKFY 369 R + Y Sbjct: 349 TGRVPRRY 356 >gi|15613083|ref|NP_241386.1| alanine racemase [Bacillus halodurans C-125] gi|20137241|sp|Q9KFF9|ALR_BACHD RecName: Full=Alanine racemase gi|10173133|dbj|BAB04239.1| alanine racemase [Bacillus halodurans C-125] Length = 388 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 152/384 (39%), Gaps = 28/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQD 59 H +++DL A++ N + L + AVVK N YG G +++ A AG Sbjct: 3 HFYRDTWVEVDLDAIEQNVTNALRLYKDREMNLMAVVKANGYGHGAVEVSQAALRAGASY 62 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V ++E + LR A I V+ + ++ + + + L + Sbjct: 63 LSVAFLDEALALRKAGIDAPILVMGLVGAEHVQLAIKHRITLTVYQLDWLEQAISRLHTR 122 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSSHVNSVQ 178 L++DTG R+GL +E + + + +H A AD+ Q Sbjct: 123 DKLAIHLKLDTGMGRIGLRRKEDIRSCMDFIASHECFELEGVFTHFATADEKDLTYFKKQ 182 Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKS 229 +RF + + + + +S+ L P +F + R GI++YG T Sbjct: 183 CQRFNQWLEYIREWQLPIRYVHCGNSAAGLRFPEKNFNMFRFGIAMYGLTPSPEITDELP 242 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 P++ + ++R+ ++K GE +SYG I IGYADG+ S Sbjct: 243 FPLKQAFSLKSRLSNVKKLPKGEGISYGATYVTEGAEWIGTLPIGYADGWIRHHSN---- 298 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 GG I G P +G+I MD M + S +GD + + G I +D+ Sbjct: 299 ------AGGHVLIDGKRAPFVGRICMDQCMIRLPKKHS--IGDTVTLIGESDGKQITMDE 350 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY++ I R + Y Sbjct: 351 VAKRLNTINYEIPCVISWRVPRIY 374 >gi|145300176|ref|YP_001143017.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852948|gb|ABO91269.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449] Length = 357 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 168/365 (46%), Gaps = 18/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +I+ AL++N + + + + AVVK NAYG G +A L + + V +EE Sbjct: 6 AQINTAALRHNLAVVKRHAPDCKIIAVVKANAYGHGLLPVARTLVD--ADAYAVARIEEA 63 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR I +L G + + N + + + L++ Sbjct: 64 LMLRSCAVVKPIVLLEGFFSSADLPVLAANNLQTAVHTWEQLEALEQAELPAPVVAWLKL 123 Query: 129 DTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG +RLG+ E F K + Q I++H + +D+ Q++ F L + Sbjct: 124 DTGMHRLGVRADEMPAFIARLAKCKNVVQPFNIMTHFSRSDELEQSTTREQIDLFSRLTA 183 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIIL 244 G E ++A+S+GIL P+ H RPG+ LYG + N + +Q V+T + ++I Sbjct: 184 PLLG-ERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R AGE V YG RD+ + V AIGY DGYP G + G Sbjct: 243 VRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPN-----------GTSVLVNG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +VP++G+++MDMT D+ + + GD ++G + ++ VA GT Y+L+ ++ +R Sbjct: 292 RIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADEIGTIPYELITKLTSR 351 Query: 365 YAKFY 369 Y Sbjct: 352 VFMEY 356 >gi|152979091|ref|YP_001344720.1| alanine racemase [Actinobacillus succinogenes 130Z] gi|171704339|sp|A6VP88|ALR_ACTSZ RecName: Full=Alanine racemase gi|150840814|gb|ABR74785.1| alanine racemase [Actinobacillus succinogenes 130Z] Length = 358 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 106/364 (29%), Positives = 174/364 (47%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK+N ++ + +++ A+VK NAYG G E +A + V F V Sbjct: 2 KPATAKISSLALKHNLELIHQKAPDSKMIAIVKANAYGHGVEFVASTVEEQ-VDGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G ++ + N I + + K Sbjct: 61 IEEALTLRSKGIIKPILLLEGFFSAKDLPVIAVNNIQTVVHNREQLEALKQTKLPNPIKV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E D+ + L +SH + AD+ S +QL RF Sbjct: 121 WLKIDTGMHRLGVALDEVEDYVEELKKCANVEPLIGYVSHFSRADELDSDYTRIQLNRFL 180 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 G +A+S GIL P+ H + RPGI +YG + + + V+T + Sbjct: 181 QATEDKGG-PRCIAASGGILFWPDSHLEWIRPGIIMYGVSPTDTPSSEFGLIPVMTLTSS 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG +D+ I V AIGY DGYP + G + Sbjct: 240 LIAVRRHKAGEPVGYGGTWISKKDTKIGVIAIGYGDGYPRNI-----------PSGTPVY 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G +VPI+G+++MDM D+ + + +VGD + ++G ++ ++ VA G +Y+L+ ++ Sbjct: 289 INGRIVPIVGRVSMDMITVDLGEDCTDKVGDEVILWGKELPIETVAKHMGILSYELMTKL 348 Query: 362 GTRY 365 R Sbjct: 349 TPRV 352 >gi|326388436|ref|ZP_08210032.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370] gi|326207168|gb|EGD57989.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370] Length = 372 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 186/366 (50%), Gaps = 17/366 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL AL N+ + A+ A VVK + YGLG +A L + G + F V + Sbjct: 5 ATLTIDLGALAANYRLIRQQVSPAQVAGVVKADGYGLGAALVARTLIDEGCRHFCVALLG 64 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 E L + +A +FVL G+ PG E IPV++S+ Q+ +S G P Sbjct: 65 EAAALVPHVRGEADVFVLNGLLPGDEAECATLGAIPVLNSLDQIELWSAQARARGRKLPA 124 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 LQ DTG +R+GLS +E + +ISHLACADDP++ N+ Q ERFR Sbjct: 125 MLQFDTGMSRMGLSPEEIDRLLATPDVLDPIDVRFLISHLACADDPTAAANAEQAERFRA 184 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +H+ G+ +L +S G L HF L R GI+LYGG + + PM VV EARI Sbjct: 185 ITAHFPGVPRALDNSGGSFLDRG-HFDLVRAGIALYGGAPRAGAN-PMHAVVALEARIAQ 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R AG V YG + R++ IA +GYADG+P L G +I G Sbjct: 243 LRTIPAGTGVGYGLTFRAERETRIATIQVGYADGWPRCLGNR-----------GAAYIGG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 PI G+++MD D+TD + G +++ GP +DDVA +GT +Y++L ++ Sbjct: 292 VRAPIAGRVSMDSITLDVTDVPAEHLFPGAPVELVGPHQSIDDVANDAGTISYEILTQLS 351 Query: 363 TRYAKF 368 RY + Sbjct: 352 RRYDRI 357 >gi|332083545|gb|EGI88765.1| alanine racemase [Shigella boydii 5216-82] Length = 359 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 167/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEKAETFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG R++ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERNTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPQAQDNAGDSVILWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|328956604|ref|YP_004373990.1| alanine racemase [Carnobacterium sp. 17-4] gi|328672928|gb|AEB28974.1| alanine racemase [Carnobacterium sp. 17-4] Length = 390 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 158/382 (41%), Gaps = 26/382 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S+ +I L ++NN + LS N AVVK + YG G ++IA AG Sbjct: 5 SSRETWAEISLDNVENNIKNFKKILSSNTALMAVVKADGYGHGAKEIAETAIEAGATYLA 64 Query: 62 VTSVEEGVKLRLYTPQARIFV--LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V ++E V LR I V + + D L + S + +L Sbjct: 65 VAFLDEAVVLRKAGFSIPILVLGYTSLDTETIEKAIDYGLTLTVYSKEAVEIIQQLADQK 124 Query: 120 VS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++D+G NR+G+ E S L I +H A AD S Q Sbjct: 125 KKVCRIHLKIDSGMNRIGVRTAEEALQIVASITSDYLLLEGIFTHFADADAIESTFVHEQ 184 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232 + F + S + +++ + P H + R GI LYG + + + Sbjct: 185 FDHFMHITSKIQEAGYTISLKHCCNTAATIAFPEMHLDMVRIGIGLYGLYPEQHLQDHIE 244 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +T + + ILI+K AG+ VSYG T DS+IA +GYADG+ LS Sbjct: 245 LKPAMTFKTKPILIKKVPAGQSVSYGRTYTTTTDSIIATIPVGYADGFSRALSN------ 298 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G I GY PI+G++ MD TM D+T+ + I +FG I + +VA Sbjct: 299 -----NGNVTIDGYKAPIVGRVCMDQTMVDLTEIDPVHFDKEIVLFGDSKDSCISISEVA 353 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ +G R + Y Sbjct: 354 TQMNTIHYEVACLVGKRVPRVY 375 >gi|309787539|ref|ZP_07682151.1| alanine racemase [Shigella dysenteriae 1617] gi|308925117|gb|EFP70612.1| alanine racemase [Shigella dysenteriae 1617] Length = 353 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 105/364 (28%), Positives = 166/364 (45%), Gaps = 19/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +EE ++ Sbjct: 2 INRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLEEALR 59 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR + +L G ++ + + S +++DT Sbjct: 60 LRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDT 119 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 120 GMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGK 179 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILI 245 G + S+A+S GILL P HF RPGI LYG + Q V++ + +I + Sbjct: 180 PG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAV 238 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ GE V YGG RD+ + V A+GY DGYP G + G Sbjct: 239 REHKVGEPVGYGGTWISERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGR 287 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ +R Sbjct: 288 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELIARLTSRV 347 Query: 366 AKFY 369 A Y Sbjct: 348 AMKY 351 >gi|254700123|ref|ZP_05161951.1| Alr, alanine racemase [Brucella suis bv. 5 str. 513] gi|261750615|ref|ZP_05994324.1| alanine racemase [Brucella suis bv. 5 str. 513] gi|261740368|gb|EEY28294.1| alanine racemase [Brucella suis bv. 5 str. 513] Length = 399 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAAYAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|157825267|ref|YP_001492987.1| alanine racemase [Rickettsia akari str. Hartford] gi|166969426|sp|A8GM54|ALR_RICAH RecName: Full=Alanine racemase gi|157799225|gb|ABV74479.1| alanine racemase [Rickettsia akari str. Hartford] Length = 355 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 185/365 (50%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+++A+KNN+ + + + A VK N YGLG +I+ AL + FFV + EEG Sbjct: 6 LEINISAIKNNYLLLQGICKTSLVGAAVKANGYGLGAVQISKALIKENCRYFFVATSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 66 VNLRKALGLDVDILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKHRLLPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGLS E ++ K L IISHLA +++ + N QL F+ + Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNIFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG + VT +A II ++ Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVMK------NPVTLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADG+ S G+ FI G Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINGRS 288 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+I+MD+ D+TD +++ G +I G D +A GT Y++L +G+R Sbjct: 289 VPIVGRISMDLINIDVTDLPPLDIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRIY 353 >gi|158520074|ref|YP_001527944.1| alanine racemase [Desulfococcus oleovorans Hxd3] gi|254802360|sp|A8ZRV0|ALR_DESOH RecName: Full=Alanine racemase gi|158508900|gb|ABW65867.1| alanine racemase [Desulfococcus oleovorans Hxd3] Length = 390 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 174/386 (45%), Gaps = 34/386 (8%) Query: 7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +IDL A+ +N ++ AL+ R A VK + YG G ++A +G V+ + Sbjct: 6 AWAEIDLDAVAHNVAALKALTRPACRLMAAVKADGYGHGMCEVASVALESGASALGVSRI 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 +E + LR + A I VL + + + D NLI + ++ + S+ + G + Sbjct: 66 DEALDLRNHGITAPILVLGHTPAHRCREMVDQNLIQTVCALAEAQALSRAATAIGATVSV 125 Query: 125 ALQVDTGFNRLGLS---------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 L+VDTG RLG++ + A+ + + +H ACAD Sbjct: 126 HLKVDTGMGRLGINTVVPGRTAPQEAAVKEALAVLDLPGLAAEGVFTHFACADSADKTHA 185 Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229 + Q +RF TLI + A+S+ ++ P H + R GI++YG Sbjct: 186 NAQFKRFSTLIQELEAAGRPVAVRHAANSAALIDMPETHLDMVRAGIAIYGLYPSAEVDR 245 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ + + R+ ++K AG VSYG + +++AV ++GYADG LS Sbjct: 246 QKVALKPAMAFKTRVAQVKKVPAGFTVSYGATYTTPKPTVLAVVSVGYADGLNRLLSSR- 304 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 G ++G VP++G+I MD+TM D+ + VGD + IFG I Sbjct: 305 ----------GFMLVRGCRVPLVGRICMDLTMLDVGGVPDVAVGDEVVIFGSQNGAFIGA 354 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 D++A A T +Y+++ I R + Y Sbjct: 355 DEIADALNTISYEVVTSITGRVPRVY 380 >gi|295702426|ref|YP_003595501.1| alanine racemase [Bacillus megaterium DSM 319] gi|294800085|gb|ADF37151.1| alanine racemase [Bacillus megaterium DSM 319] Length = 396 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 158/381 (41%), Gaps = 29/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +ID+ A+ N + + L + AVVK NAYG G +++A AG V Sbjct: 16 RETWAEIDVEAIFQNVNHVRELIPVHKTLMAVVKANAYGHGDKEVAEIALQAGADMLAVA 75 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + I VL + + + ++ S + + ++ Sbjct: 76 FLDEAIALRKKGIKESILVLGAVPTLHIQTALEWDVTVTAYSKAWIEEAASILGENSQLH 135 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG RLG+ +E L T L + +H A AD+ +S Q F Sbjct: 136 MHLKIDTGMGRLGVRTKEELHETMKIIASHSGFVLDGVFTHFATADELNSSYFEEQYTFF 195 Query: 183 RTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 ++ ++K A+S+ +L P F R GIS+YG + P++ Sbjct: 196 EEMVRIVKEYNFKPPMIHCANSAALLRRPKDIFNGVRLGISMYGLSPSEELKEVLPIPLK 255 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + +RI+ ++K G +SYG + D IA +GYADG+ LS Sbjct: 256 QAFSLHSRIVHVKKVKKGSHISYGATYEAKEDEWIATIPVGYADGWIRKLSNF------- 308 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 + + G VPI+G+I MD M + + G + G +I +D+VA Sbjct: 309 -----EVLVDGVKVPIVGRICMDQLMIKLPKMY--KTGTKVTFIGKQKGAEITIDEVAKH 361 Query: 350 SGTTNYDLLVRIGTRYAKFYT 370 T NY++ + R + YT Sbjct: 362 LETINYEIPCMVAARVPRVYT 382 >gi|170760162|ref|YP_001787063.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree] gi|169407151|gb|ACA55562.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree] Length = 389 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 161/384 (41%), Gaps = 27/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 3 RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V + E +LR I +L P + I D N+ PV+ S SK S Sbjct: 63 VACLSEATELRKGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKNR 122 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG E+L+ + ++ + SH + +D+ + Q Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQDLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182 Query: 180 ERF----RTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 + F + LI I +S+ I+ P+ + R GI LYG + ++ Sbjct: 183 KIFQNFRKKLIEMNMRIPIHHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLH 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T +A I+ I+ +G V Y + K R S IA+ +GY DGY LS Sbjct: 243 IKQVMTLKANIVHIKTIDSGRYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345 GK I G PI+G I MD M D+TD ++VGD + I G D +D Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAED 351 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A G T+ +++ I R + Y Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375 >gi|145632963|ref|ZP_01788696.1| alanine racemase [Haemophilus influenzae 3655] gi|144986619|gb|EDJ93185.1| alanine racemase [Haemophilus influenzae 3655] Length = 360 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 109/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L + V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I I + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETIVHNREQLEALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPKSHLECIRPGIIIYGISPTDTIGKEFDLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|282860859|ref|ZP_06269925.1| alanine racemase [Streptomyces sp. ACTE] gi|282564595|gb|EFB70131.1| alanine racemase [Streptomyces sp. ACTE] Length = 384 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 158/380 (41%), Gaps = 29/380 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N + A + A+ AVVK +AYG G A A AG + Sbjct: 8 RARAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGALPCARAALEAGATWLGTATP 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR R+ G + + ++ +S + + G Sbjct: 68 QEALALREAGVGGRVMCWLWTPGGPWREAIEADIDVSVSGMWALREVVEAATAAGRPARV 127 Query: 125 ALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+ DTG R G + + + +++ + SH ACAD+P + QL Sbjct: 128 QLKADTGLGRNGCQPADWPELVSAARGAEEAGTLRVTGLWSHFACADEPGHPSIAAQLTA 187 Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPM 232 FR +++ + +A+S L P HF L R GI++YG + + Sbjct: 188 FRDMVAYAEKEGVRPEVRHIANSPATLTLPESHFDLVRTGIAMYGLSPSPALGTPADFGL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+T A + L+++ G +SYG + ++ +A+ +GYADG P SG Sbjct: 248 RPVMTLSASVALVKEVPPGHGISYGHHYTTSAETTLALVPLGYADGIPRHASGR------ 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G I G + + G++ MD + D+ G +FGP + +D A+ Sbjct: 302 -----GPVLIDGAVRTVAGRVAMDQFVVDLGGDTP-RPGARAVLFGPGDQGEPGAEDWAV 355 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 A+ T Y+++ RI R + Sbjct: 356 AADTIGYEIVTRISGRVPRV 375 >gi|327482293|gb|AEA85603.1| alanine racemase, catabolic [Pseudomonas stutzeri DSM 4166] Length = 358 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 165/368 (44%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DLTAL++N+ + + AVVK NAYG G + AL F V Sbjct: 2 RPLVATVDLTALRHNYLLAKQCAPQRKAFAVVKANAYGHGAPEAVTALREI-ADGFAVAC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE +R P+ARI +L G E + + + + + Sbjct: 61 LEEAEVIRGCAPEARILLLEGCFEPSEYLRAAELGLDIAVQDARQADWLLAADLARPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG S+ + +ISH ACAD+ + QLER+ Sbjct: 121 WLKLDSGMHRLGFSVDGLRECHARLKGAPQVGELNLISHFACADERGHALTETQLERYAE 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 L+ SLA+S+ ++ P H RPGI LYG T S ++ V+T Sbjct: 181 LLELPFE-HCSLANSAAVVTLPQAHMAWIRPGIMLYGATPFAELSARELGLKPVMTLTGA 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R GE V YG R S I + GYADGYP + G Sbjct: 240 LIAVRDVPVGESVGYGASWVAQRPSRIGTVSCGYADGYPR-----------TAPSGTSVV 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G VP+ G+++MDM D+TD ++GD ++++G + +D++A A GT Y+LL ++ Sbjct: 289 IHGQRVPLAGRVSMDMLAVDLTDLPQAQLGDAVELWGAQMPIDELAQACGTIGYELLTKV 348 Query: 362 GTRYAKFY 369 R + Y Sbjct: 349 TGRVPRRY 356 >gi|114328882|ref|YP_746039.1| alanine racemase [Granulibacter bethesdensis CGDNIH1] gi|114317056|gb|ABI63116.1| alanine racemase [Granulibacter bethesdensis CGDNIH1] Length = 360 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 187/366 (51%), Gaps = 13/366 (3%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL+IDL A+ NW + G R AVVK + YGLG IA L G FV Sbjct: 1 MARLEIDLEAIAANWRFLRTTHGTNRITGAVVKADGYGLGAAVIAQRLVQEGCDHIFVAH 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-P 123 +E + LR P A + VL G+ PG E D LIP + S+ ++ + + + P Sbjct: 61 PQEALTLRPLIPSATLIVLNGLWPGWEAAYTDHGLIPALGSLAEIEAWRQEATRREQALP 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L VDTG NRLGL QE L I++HL A+ P N++Q +RF Sbjct: 121 AFLHVDTGINRLGLDPQERDRLAERPELLDGITLRAIMTHLISAEIPDHDSNTLQRQRFA 180 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 S S+A+SSGI LGP++ + RPG +LYG + +PM+ V+ AR++ Sbjct: 181 AACSRLPPAPRSIANSSGIFLGPDFASDIARPGAALYGINPVPGRPNPMRPVLRLSARVL 240 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 IR AGE+V Y G R S IAV ++GYADG+ LS + Sbjct: 241 QIRPVEAGEIVGYNGIWVAQRPSRIAVCSVGYADGFQRALSSR-----------AEAAFD 289 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G +P++G+++MD+T +D+TD I VG ++++ GP++ D+VA + T Y++L +G Sbjct: 290 GARIPLVGRVSMDLTTYDVTDDPRITVGSWLELIGPEVSPDEVAARASTNGYEVLTSLGR 349 Query: 364 RYAKFY 369 RY + Y Sbjct: 350 RYERVY 355 >gi|54293722|ref|YP_126137.1| hypothetical protein lpl0775 [Legionella pneumophila str. Lens] gi|81822433|sp|Q5WYG1|ALR_LEGPL RecName: Full=Alanine racemase gi|53753554|emb|CAH15009.1| hypothetical protein lpl0775 [Legionella pneumophila str. Lens] Length = 357 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 176/367 (47%), Gaps = 19/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+ +AL +N + L+ + A+VK NAYG G ++AP L + ++ F V Sbjct: 2 SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE + +R + + G+ E + + + V+ QL + K Sbjct: 61 CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAKQLEWLIKT-PLPYPI 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++V+TG +RLG + E + + +++HLACAD+P N Q+ Sbjct: 120 KVWVKVNTGMHRLGFKIHELQKVMDALQTCTWVDKNIGLMTHLACADEPHRPENQQQISL 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTA 238 F+ IS + S+A+S+ I+ P+ + RPGI LYG + N+ + V+ Sbjct: 180 FQE-ISIPGFRQRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNARDLGLIPVMRF 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I I + V YGG K + S I + A GY DGYP +S Sbjct: 239 MSAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS-----------EKT 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 +++G V I+G+++MDM D+T+ +E+GD ++++G + ++ +A ++GT Y+LL Sbjct: 288 PVWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTIGYELL 347 Query: 359 VRIGTRY 365 +I R Sbjct: 348 CQISERV 354 >gi|323144440|ref|ZP_08079044.1| alanine racemase [Succinatimonas hippei YIT 12066] gi|322415779|gb|EFY06509.1| alanine racemase [Succinatimonas hippei YIT 12066] Length = 359 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 162/367 (44%), Gaps = 19/367 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +I+ ALKNN + ++ AVVK NAYG G ++A ALY V F V ++ Sbjct: 4 ATAEINTQALKNNIDIIKTYVPGSKIVAVVKANAYGHGLYQVASALYEK-VDAFAVARLD 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR + I +L G ++ + I + + L Sbjct: 63 EALNLREQGIKKPIILLEGFFNEEDLPFIARSEIYTAVHDMEQLEAIERAKVEKPLHCWL 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSS-HVNSVQLERFRT 184 ++D G +RLG Q+ L+ + +ISHL+ AD P+ N Q+ FR Sbjct: 123 KIDIGMHRLGADPQDVLNMKERLEKCPNVLKPIGLISHLSVADTPTETDYNIAQINYFRE 182 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 H+ G + L++S+GIL P+ H RPGI +YG + +K ++ V+T ++ Sbjct: 183 TAKHFSG-DLCLSNSAGILAWPDSHTPWVRPGIIMYGISPFEDKVGSDFGLKPVMTLKSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II IRK G V YG D+ I + A GY DGYP G Sbjct: 242 IIAIRKVKKGAKVGYGAAWTAPYDTTIGIVATGYGDGYPRVAPN-----------GTPVL 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G VP G + MDM D+ + +VGD ++G + ++ +A GT Y+L+ R+ Sbjct: 291 INGKYVPTAGHVCMDMMFVDLGLNSQDKVGDEAILWGKGLPVEKIAKLCGTIPYELVCRV 350 Query: 362 GTRYAKF 368 R + Sbjct: 351 MPRV-RV 356 >gi|288554966|ref|YP_003426901.1| alanine racemase [Bacillus pseudofirmus OF4] gi|190403006|gb|ACE78171.1| alanine racemase [Bacillus pseudofirmus] gi|288546126|gb|ADC50009.1| alanine racemase [Bacillus pseudofirmus OF4] Length = 369 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 164/382 (42%), Gaps = 29/382 (7%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M ++ F +I L ALK N S A S R AVVK + YG G A + N G Sbjct: 1 MKTSSFRNTYAQISLQALKENAASFKASLQSPACRLMAVVKGDGYGHGAVAAASSALNGG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKL 115 V ++E ++LR +A I VL P + + V S+ + Sbjct: 61 ADYLGVAILDEAIELRDAGVEAPILVLGYTSPHALREAISRNITLTVFSTDVRDALLEVA 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++ +TG R+G+ +E LD ++ ++ I +H A AD+ S Sbjct: 121 SEAESPIKVHIKTETGMGRVGVQTKEELLDVMTPLYHHNNIEVEGIFTHFAEADNLQSTY 180 Query: 175 NSVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 Q RF + I +S+G L + H + R GISLYG ++ Sbjct: 181 TDEQFARFLSFIEAIEKDDMHVPIKHCCNSAGTLFHKDKHLDMVRVGISLYGLRPDVSLE 240 Query: 230 HPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 P+ + + I+ +RK G +SYG KL+ + ++A IGYADG LS Sbjct: 241 FPIELTQAMRLFSSIVSLRKLPEGSSISYGRTHKLSSEKVVATMPIGYADGLSRALSN-- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347 G + G PILG++ MD TM D+TD +GD+++ +D++A Sbjct: 299 ---------KGFVTLHGQKAPILGRVCMDQTMIDVTDIPDAALGDHVEF-----PIDEMA 344 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 +GT NY+++ + R ++Y Sbjct: 345 ELTGTINYEIVCAVSKRVPRYY 366 >gi|85858827|ref|YP_461029.1| alanine racemase [Syntrophus aciditrophicus SB] gi|85721918|gb|ABC76861.1| alanine racemase [Syntrophus aciditrophicus SB] Length = 661 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 105/375 (28%), Positives = 170/375 (45%), Gaps = 25/375 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL + NW + L G A R VVK +AYG G +I+ G V + + Sbjct: 12 WVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKNGAACLGVANAD 71 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125 EGV+LR+ A I +L G+ + I L P +S + F L GV+ P Sbjct: 72 EGVQLRVSGITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRHLARAGVTSPVH 131 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG R G+ +EA N F + I +HLA ++ N Q FR L Sbjct: 132 IEIDTGMGRGGMLCEEAPAIIRNIFGLPNIAVEGIFTHLASSEVCVD-YNEQQWSLFREL 190 Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTA 238 + +A+S IL P +H + RPG+ YG ++ V++ Sbjct: 191 TDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTEDRADLRPVMSF 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + R++L+++ AG + Y R S IA +GY DGY + LS G Sbjct: 251 KTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQ-----------G 299 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + I+G P++G+I+MDMT D++ +GD + + G I +D+A+ T + Sbjct: 300 EVLIRGRRAPVVGRISMDMTTVDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTIS 359 Query: 355 YDLLVRIGTRYAKFY 369 YD+L +G R + + Sbjct: 360 YDILCALGKRAPRIF 374 >gi|239947144|ref|ZP_04698897.1| alanine racemase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921420|gb|EER21444.1| alanine racemase [Rickettsia endosymbiont of Ixodes scapularis] Length = 354 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 182/365 (49%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+L+A+KNN+ + + + A VK N YGLG +I+ AL + FFV S EEG Sbjct: 6 LEINLSAIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 66 VNLRKALGVDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGL+ E +N K L IISHLA ++ + N QL RF+ + Sbjct: 126 HFNTGINRLGLTHDEIEQLINNRDLLKGLDLQYIISHLAISEKIDNSYNLEQLNRFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG + V +A II ++ Sbjct: 186 RYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVMK------NPVNLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADGY S G+ FI G Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGYSCNFSNQ-----------GEVFINGCS 288 Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+I+MD+ D+TD I +G +I G D VA GT Y++L +G R Sbjct: 289 VPIVGRISMDLINIDVTDLPPSDIFLGQEAEIIGNHCTPDKVASIIGTIGYEVLTSLGNR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRIY 353 >gi|160879061|ref|YP_001558029.1| alanine racemase [Clostridium phytofermentans ISDg] gi|160427727|gb|ABX41290.1| alanine racemase [Clostridium phytofermentans ISDg] Length = 389 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 161/384 (41%), Gaps = 29/384 (7%) Query: 3 SNEFLRLK--IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + +LR+ I+L A+ +N + AV+K + YG G IA A + V+ Sbjct: 7 NQRYLRVSANINLDAIIHNVAEARKNIKKETGIFAVIKADGYGHGAVPIARA-IDNDVEA 65 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 + V VEEG++LR I +L P I +L + + + Sbjct: 66 YAVAIVEEGIELREAGITKPILILGYTAPELLTEIVQYDLTQTVFQLSMAEKLDEIARTL 125 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G +++DTG +R+G E++D L I +H+ACAD Sbjct: 126 GKVAKIHIKLDTGMSRIGYQPTAESIDEIVRMKKLSNLMLEGIFTHMACADMTDKTSAKK 185 Query: 178 QLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231 Q E F ++ + +++S+G + P + + R GISLYG Sbjct: 186 QFELFTAFVNQLEEQGVKLPIQHISNSAGTIDLPEMNLSMVRFGISLYGLYPSEEVDKNH 245 Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + + I +++ G + YG + IA +GY DG+P LS + Sbjct: 246 LSLEPAMELKTHISFVKELEPGHGIGYGSTFVTKKTMTIATVPVGYGDGFPRQLSNV--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G+ + G PI+G+I MD M D+TD ++ GD + + G D I +++ Sbjct: 303 --------GRVLVHGEFAPIVGRICMDQFMIDVTDIPEVKQGDIVTLVGRDGDNIIPVEE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A +G+ NY+ + +G R + Y Sbjct: 355 PADLAGSFNYEFVCNVGKRIPRVY 378 >gi|90414458|ref|ZP_01222434.1| alanine racemase [Photobacterium profundum 3TCK] gi|90324463|gb|EAS41022.1| alanine racemase [Photobacterium profundum 3TCK] Length = 359 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL +N ++ + N++ AVVK N YG G +A +L + F V +EE + Sbjct: 8 INTDALTHNIRQLHLQAPNSKLLAVVKANGYGHGLLHVAKSLPD--ADAFGVARIEEALT 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + I TN I + + + L++DT Sbjct: 66 LRAGGVVKPILLLEGFYGASDLPIIVTNNIHTVVHSIEQLEALESAELDNQAVVWLKIDT 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++ DF + + +SH CADD +S+V + Q+ F +L Sbjct: 126 GMHRLGVRPEQLDDFVQRLHACDNVAKPLRYMSHFGCADDLTSNVTNQQINTFLSLTEGC 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEARIIL 244 G E SLA+S+GIL P+ + RPGI +YG + I +Q V+T + +I Sbjct: 186 SG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFIEPDRSAEAFNLQPVMTLTSSLIA 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R GE V YGG RD+ + V AIGY DGYP T G + G Sbjct: 245 VRDVKEGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNG 293 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +VP+ G+++MDM D+ + +VGD ++G + + VA GT Y+L+ ++ +R Sbjct: 294 RIVPMAGRVSMDMLTVDLGPNAQDKVGDEAVLWGNGLPAEVVAEHIGTIAYELVTKLTSR 353 Query: 365 YAKFY 369 Y Sbjct: 354 VDMTY 358 >gi|298291077|ref|YP_003693016.1| alanine racemase [Starkeya novella DSM 506] gi|296927588|gb|ADH88397.1| alanine racemase [Starkeya novella DSM 506] Length = 374 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 139/363 (38%), Positives = 205/363 (56%), Gaps = 11/363 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL+AL N+ + A A+ AAVVK +AYGLG A L++AG + FFV + E Sbjct: 15 LTIDLSALAANFRDVAARVAPAKCAAVVKGDAYGLGLVPTASTLWHAGARTFFVALLSEA 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127 KLR P A IFVL G+ PG E L+PV+ SVP++ + G P AL Sbjct: 75 RKLRELLPDAEIFVLNGLFPGTEATYQQHALLPVLGSVPEIERWQQFCERTGEPLPAALH 134 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG NRLGLS EA++ L+L++SHLACAD+P + QLE F+ +++ Sbjct: 135 VDTGMNRLGLSAAEAVNVAEGRDEL-GFPLALLMSHLACADEPGHPLTDRQLEDFQAIVA 193 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + + ASLA+S+G L P+ HF L RPGI++YG + + + P+Q VV + RI+ IR+ Sbjct: 194 LFPDVRASLANSAGALGDPSLHFDLVRPGIAVYGARPRADVA-PLQPVVRLDLRIVQIRR 252 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE + YG R+S +A+ + GYADG P S + + G + + G+ Sbjct: 253 VHEGETIGYGAAHTAKRESRVAILSAGYADGIPRLAS------ASDLRPGAEAVVGGHRC 306 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+I+MD+ DITD + GD+ + G + L+D+A S T +Y++L +G RY Sbjct: 307 PLIGRISMDLLAVDITDVDEDAVAAGDFATLLGDGLALEDLARHSATIDYEILTSLGRRY 366 Query: 366 AKF 368 + Sbjct: 367 HRR 369 >gi|261320388|ref|ZP_05959585.1| alanine racemase [Brucella ceti M644/93/1] gi|261293078|gb|EEX96574.1| alanine racemase [Brucella ceti M644/93/1] Length = 396 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQLLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|254712683|ref|ZP_05174494.1| Alr, alanine racemase [Brucella ceti M644/93/1] gi|254715753|ref|ZP_05177564.1| Alr, alanine racemase [Brucella ceti M13/05/1] gi|261217513|ref|ZP_05931794.1| alanine racemase [Brucella ceti M13/05/1] gi|260922602|gb|EEX89170.1| alanine racemase [Brucella ceti M13/05/1] Length = 399 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQLLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|298489912|ref|YP_003720089.1| alanine racemase ['Nostoc azollae' 0708] gi|298231830|gb|ADI62966.1| alanine racemase ['Nostoc azollae' 0708] Length = 395 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 112/381 (29%), Positives = 170/381 (44%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL N + LS + AVVK +AYG G +A + AG V Sbjct: 23 SQRAWVEIDLGALSYNVKQLVIFLSSRTQLMAVVKADAYGHGSVTVAKTVLEAGASCLGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118 +V EG++LR +A I +L H Q I L P + S Q S + Sbjct: 83 ATVPEGIQLREGGIKAPILILGATHTLEQIHAIAQWKLQPTLCSPKQALEVSNTLEAINY 142 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++DTG +RLG + QEA DF ++ + SHLA AD P + Q Sbjct: 143 NSPIPVHIKLDTGMSRLGTNWQEAGDFVQLVQGLPHLDIASVYSHLATADSPDPAIMQQQ 202 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231 RF I+ K LA+S+ L P H+ + R G+++YG + Sbjct: 203 HNRFEQAIAQIKARGIKIPSLHLANSAATLADPKLHYDMVRAGLAIYGLYPATHLENKIK 262 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q V+ +AR+ ++ AG VSYG Q R+ IAV IGYADG P +LS Sbjct: 263 LQPVLQLKARVTHVKTIAAGTGVSYGHQFIAPREMRIAVVGIGYADGVPRSLSNQM---- 318 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + ++G V +G ITMD M D++ ++ G+ + + G I DD A Sbjct: 319 -------QVLLRGQRVHQIGTITMDQIMLDVSSIPDLQEGEIVTLLGEQGQEQISADDWA 371 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 372 NQLNTISWEILCAFKHRLPRV 392 >gi|226946802|ref|YP_002801875.1| alanine racemase [Azotobacter vinelandii DJ] gi|226721729|gb|ACO80900.1| alanine racemase [Azotobacter vinelandii DJ] Length = 361 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 166/371 (44%), Gaps = 23/371 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L G AR AVVK +AYG G + A AL F V Sbjct: 2 RPARALIDLAALRHNYRLAREL-GGARALAVVKADAYGHGAVRCARALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR A I +L G E + + + P + + Sbjct: 60 IEEALELREAGIAAPILLLEGFFESAELEPIQRHDLWCVVHSPWQLEAIERTALTRPLTC 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G + + + +SH A AD+ + QL +F T Sbjct: 120 WLKLDSGMHRVGFAPADYRAAHARLMASGKVARIVAMSHFARADELDCPRVAEQLAQFET 179 Query: 185 LISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYGGTDKI---NKSHPMQTVV 236 + E SL +S +L P + + RPGI LYG T ++ ++ V+ Sbjct: 180 ATAGLVA-EFSLRNSPALLGWPQFFRHGHGDEWLRPGIMLYGATPFERYQEQAAQLRPVM 238 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E+RII +R+ AGE V YG + +R + + V A+GYADGYP Sbjct: 239 TLESRIIGVRELPAGEPVGYGARFVASRPTRVGVVAMGYADGYPRHAPN----------- 287 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G ++G+++MDM D+TD +G ++++G + +VA A+GT Y Sbjct: 288 GTPVAVDGRPAQLIGRVSMDMLTVDLTDLPQAGLGSRVELWGAQVPASEVAAAAGTIAYQ 347 Query: 357 LLVRIGTRYAK 367 L + R A+ Sbjct: 348 LFCNV-RRVAR 357 >gi|118616650|ref|YP_904982.1| alanine racemase [Mycobacterium ulcerans Agy99] gi|166969420|sp|A0PME2|ALR_MYCUA RecName: Full=Alanine racemase gi|118568760|gb|ABL03511.1| alanine racemase, Alr [Mycobacterium ulcerans Agy99] Length = 388 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+ +N + +G+A+ AVVK + YG G +A AG + V SV Sbjct: 13 LAEAVVDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASV 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ ISS+ Q G + Sbjct: 73 DEALTLRADGITAPVLAWLHAPGMDFGPALAADVQIAISSIRQLDEALDAARRTGTTATV 132 Query: 125 ALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG NR G++ E + + + +L +++H+ AD P +N +Q +R Sbjct: 133 TVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQSQR 192 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F+ ++ H + A L++SS + P+ L RPGI++YG + + Sbjct: 193 FKQMLDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPRLGDMGLVPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG D+ +A+ IGYADG +L G Sbjct: 253 MTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADGVFRSLGGRL-------- 304 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G++ MD + D+ + GD +FGP + D A Sbjct: 305 ---EVLINGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTAQDWADLV 361 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 362 GTIHYEVVTSPRGRITRVY 380 >gi|319407017|emb|CBI80654.1| Alanine racemase [Bartonella sp. 1-1C] Length = 373 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 192/365 (52%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ A+ N+ ++ +AVVK +AYGLG EKIAPALY AG + FF+ ++E Sbjct: 19 ATIDIGAIVANYKTLVQRVAPIECSAVVKADAYGLGAEKIAPALYQAGCRTFFIAHLKEA 78 Query: 69 VKLRLYTPQARIFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126 ++L+ P + L GI P E+ + T ++PV++S ++ + G P + Sbjct: 79 LQLKAILPNNVTLILLNGIPPTAEEFVTQTGIVPVLNSRNEIENWQMHCQKNGKKFPAII 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E N ++ + IISHLA D+ + N Q +T + Sbjct: 139 QIDTNMNRLGLDQEELQWLIQNPSLFEIADIKYIISHLANGDNATHASNCEQKNAMKTAL 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +ASLA+S GI LGP+++F L RPGI LYG ++ V+ +A++I R Sbjct: 199 AQLPTCKASLANSGGIFLGPDFYFDLVRPGIGLYGIDPHQQHPTSLKPVLKLKAQVIQSR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG + S++ +IGYADG+ LS G + + Sbjct: 259 CTEAGSPVGYGGSFITQKPSILTTISIGYADGWLRNLSN-----------KGFVYFNQHK 307 Query: 307 VPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+I+MD + D T+ + GD++++ G +++VA +GT Y++L +G+R Sbjct: 308 LPIIGQISMDSIIVDATNLQHEKPKRGDWVELIGKHQTIENVAADAGTIPYEILTSLGSR 367 Query: 365 YAKFY 369 Y + Y Sbjct: 368 YKRIY 372 >gi|229167180|ref|ZP_04294921.1| Alanine racemase [Bacillus cereus AH621] gi|228616218|gb|EEK73302.1| Alanine racemase [Bacillus cereus AH621] Length = 398 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 102/385 (26%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSN--EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ N +++DL AL+ N+ VVK NAYG G IA A+ AG Sbjct: 1 MNVNYGRHTIIEVDLNALQRNFQQYKQAIPFGTAIMTVVKANAYGHGAVPIAKAVTEAGT 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 V V+EG++LR I + +L + ++ L ++ Sbjct: 61 SHLAVAFVDEGIELREAGITVPILIFGYTPYEAIVDAITYDLSMTVYTIEDLHAIEEVAS 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG +RLGL L E F K Q+ + +H ACAD+ Sbjct: 121 QMEKNAYIHIKIDTGMSRLGLQLNEVTLFLQTLKCTKYIQVEGMYTHFACADERDKMYTL 180 Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 +Q E F+ +S + + +S+ + + R GI+LYG + + Sbjct: 181 MQQEVFQKAVSKAEELQIVIPWIHANNSAATIDMRETKGNMVRLGIALYGLYPSADVNQE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +Q ++ ++++ I+K G V YG T + IA +GYADG LS Sbjct: 241 AISLQPILIFKSKVAHIKKVKKGNGVGYGATYTATGEEWIATIPVGYADGVSRQLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G IKG VPI+G+I MD M D+T + I VGD + +G I +D Sbjct: 298 --------KGFVLIKGMKVPIIGRICMDQLMLDVTKIMPIHVGDEVVFYGNQGEESISVD 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 VA T NY++ + R + Y Sbjct: 350 CVADILSTINYEITCMLSRRIPRIY 374 >gi|159029814|emb|CAO90868.1| alr [Microcystis aeruginosa PCC 7806] Length = 378 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 109/377 (28%), Positives = 178/377 (47%), Gaps = 25/377 (6%) Query: 6 FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ID +AL+ N + AL + AV+K +AYG G K+A ++ AG Q + + Sbjct: 8 RAWVEIDRSALQQNVRKVKALLAPKTELMAVIKADAYGHGAVKVANSVLEAGAQSLAIAT 67 Query: 65 VEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 + EG++LR A I +L P + + L P + + Q+ + + + Sbjct: 68 IGEGIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVRIFAAVMRRLEQRL 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P +++DTG +RLG F +++ I SH A ADDP+ + +Q +RF Sbjct: 128 PVHIKLDTGMSRLGTPWHNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRF 187 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235 + I+ Y LA+S+ L + H+ R G++LYG + P+Q V Sbjct: 188 QQAIAELKSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +ARI ++ AG VSYG Q +D+ IAV IGYADG P LS Sbjct: 248 LQVKARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSNRL-------- 299 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 K ++G +VP +G ITMD M D+++ ++ G+ + + G D I DD A G Sbjct: 300 ---KVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGLQCITADDWARDLG 356 Query: 352 TTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 357 TISWEILCGFKHRLPRI 373 >gi|163760547|ref|ZP_02167628.1| putative alanine racemase protein [Hoeflea phototrophica DFL-43] gi|162282162|gb|EDQ32452.1| putative alanine racemase protein [Hoeflea phototrophica DFL-43] Length = 374 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 160/366 (43%), Positives = 216/366 (59%), Gaps = 9/366 (2%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R+ +DLTAL NW S+ LSG+AR A VK + YG+G + A L G +DFFV Sbjct: 15 TRMSVDLTALAANWLSLRELSGSARCGAAVKADGYGIGAIEAASRLAREGCRDFFVADAN 74 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG LR + P RI VL G+ I +L+PVI+S Q + YAL Sbjct: 75 EGASLRPHLPDVRIHVLNGVFEDSFAQILAHDLVPVINSTEQ---AAFWTGTADGRAYAL 131 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +DTG NRLGL+ ++A +L++SH ACAD+P +N+ Q+E F L Sbjct: 132 HIDTGMNRLGLTPEQAAA----YAQSDAPPPALLMSHFACADEPGHPLNARQIEMFEALK 187 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + IEASLA+S+GI LG H LTRPGISLYGG + + M+ VVTAE R++ IR Sbjct: 188 ACFPSIEASLANSAGIHLGKPAHHDLTRPGISLYGGNPVADANPKMRPVVTAETRVLQIR 247 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 +A AG+ VSYG L+RDS IAV IGYADG+ SG + G G I G Sbjct: 248 QARAGQPVSYGAAHFLSRDSRIAVCGIGYADGFLRAGSGAGVPLRSAAPKGAFGAINGKR 307 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP++GKITMD+TMFD+TD E+ G +I++FGP I L++ A A+GT +Y++L +G R Sbjct: 308 VPVIGKITMDLTMFDVTDLGEDEIGAGSWIELFGPTISLEEAAQAAGTISYEMLTSLGRR 367 Query: 365 YAKFYT 370 +A+ YT Sbjct: 368 HARRYT 373 >gi|162455533|ref|YP_001617900.1| hypothetical protein sce7251 [Sorangium cellulosum 'So ce 56'] gi|226711060|sp|A9ESU7|ALR_SORC5 RecName: Full=Alanine racemase gi|161166115|emb|CAN97420.1| alr [Sorangium cellulosum 'So ce 56'] Length = 379 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 32/386 (8%) Query: 5 EFLRLKIDLTALKNNWHSM-NALSGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 R +++L L++N + L+G + V+K +AYG G +A L AG+ Sbjct: 2 RPTRAEVNLAHLRHNLRVLERGLTGATKPQIWGVLKADAYGHGAPAVARTLERAGIPGLC 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHP---GQEKIIFDTNLIPVISSVPQLTFYS--KLM 116 V +EE ++LR + I V+ G + + I +L+PV+ Q+ + + Sbjct: 62 VALLEEAIELRDAGIRLPILVMGGYYGPRRDGFEEIIARDLVPVVYDAGQIERLASVVRL 121 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 L+VDTG RLG + E +L +++HLACAD V Sbjct: 122 EQRGRVGVHLKVDTGMGRLGAASSEIEAVLATLAKHPEVKLDGLMTHLACADADDLGVTI 181 Query: 177 VQLERF--RTLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+ F + G+ + +S+ +L P + RPG++L+G + + Sbjct: 182 EQMRLFGEIEQRAKSFGLTPRVRHASNSAAMLRLPAALLDIVRPGVALFGISPCAGLAPD 241 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ + I+ +R G+ + YG + +R+S++A +GYADG LS Sbjct: 242 LKPVIRVRSEIVALRTIAKGDRIGYGHTWQASRESVVATVPMGYADGLSRQLSNR----- 296 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--------IKL 343 G ++G PI G ++MD+TM D+TD +GD + G I Sbjct: 297 ------GAALVRGQRAPIAGAVSMDLTMLDVTDVPGARLGDEVVFLGTQDGPLGRGTISA 350 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +++A +GT +++L I R +FY Sbjct: 351 EEIAGLTGTIAWEVLTSISRRVPRFY 376 >gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4] gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4] Length = 819 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 157/372 (42%), Gaps = 23/372 (6%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L AL +N + L + +VK AYG G ++A L + V Sbjct: 459 TTLEVNLNALIDNLNYFRAKLRPETKIMCMVKAFAYGSGAVEVARTLQHHRCDYLAVAVA 518 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHP 123 +EG +LR + I V+ G +IFD L P I S L + +P Sbjct: 519 DEGAELRREGIRIPIVVMNP-EKGSFGMIFDNKLEPEIYSFRLLDAFIASAEKLGLTDYP 577 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERF 182 +++D+G +RLG + + N+ ++ + SHL+ +D+ Q++ F Sbjct: 578 IHIKIDSGMHRLGFEPKNMEELLTRLKNQNQVKVRSVFSHLSGSDEAKFDSFTKQQIDTF 637 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 I + +S+GI Y F + R GI YG + + + Sbjct: 638 TDCADQLSGAFSHNIMRHILNSAGIERFSEYQFDMVRLGIGHYGISSLPDVKLKQVCAL- 696 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I+ I+ AGE V Y + + D IA+ IGYADG+ L G Sbjct: 697 -KTIILQIKTVKAGETVGYSRKGIVNEDKRIAIIPIGYADGFDRKLGNG----------G 745 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 G+ + G ++G + MD+ M D+T+ GD ++IFG ++ + +VA T Y++ Sbjct: 746 GEVLVNGKRAKVIGNVCMDLVMIDVTNV-EANEGDSVEIFGDNLTISEVAGWLKTIPYEV 804 Query: 358 LVRIGTRYAKFY 369 L + R + Y Sbjct: 805 LTSVSRRVKRVY 816 >gi|166367623|ref|YP_001659896.1| alanine racemase [Microcystis aeruginosa NIES-843] gi|166089996|dbj|BAG04704.1| alanine racemase [Microcystis aeruginosa NIES-843] Length = 397 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 110/377 (29%), Positives = 179/377 (47%), Gaps = 25/377 (6%) Query: 6 FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ID +AL+ N + AL + AV+K +AYG G K+A ++ AG Q + + Sbjct: 27 RAWVEIDRSALQQNVRKVKALLAPKTELIAVIKADAYGHGAVKVANSVLEAGAQSLAIAT 86 Query: 65 VEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSH 122 + EG++LR A I +L P + + L P + + Q+ ++ + Sbjct: 87 IGEGIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVQIFASVMRRLEQRL 146 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P +++DTG +RLG Q F +++ I SH A ADDP+ + +Q +RF Sbjct: 147 PVHIKLDTGMSRLGTQWQNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRF 206 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235 + I+ Y LA+S+ L + H+ R G++LYG + P+Q V Sbjct: 207 QQAIAELRSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPV 266 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +ARI ++ AG VSYG Q +D+ IAV IGYADG P LS Sbjct: 267 LQVKARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSNRL-------- 318 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 K ++G +VP +G ITMD M D+++ ++ G+ + + G D I DD A G Sbjct: 319 ---KVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGPQCITADDWARDLG 375 Query: 352 TTNYDLLVRIGTRYAKF 368 T ++++L R + Sbjct: 376 TISWEILCGFKHRLPRI 392 >gi|145641722|ref|ZP_01797298.1| alanine racemase [Haemophilus influenzae R3021] gi|145273536|gb|EDK13406.1| alanine racemase [Haemophilus influenzae 22.4-21] Length = 360 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L V F V Sbjct: 4 KPATAKISSHALKKNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSLIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 + +G E ++A+S GIL P H + RPGI +YG + I K + V+ + Sbjct: 183 SATKDKQG-ERTIAASGGILFWPESHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP +V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYP-----------SNVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|307328078|ref|ZP_07607259.1| alanine racemase [Streptomyces violaceusniger Tu 4113] gi|306886383|gb|EFN17388.1| alanine racemase [Streptomyces violaceusniger Tu 4113] Length = 384 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 153/385 (39%), Gaps = 29/385 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R +DL AL+ N ++ + A AVVK +AYG G A A AG Sbjct: 3 ETPMRARAVVDLAALRANVRALRDAAPTAELMAVVKADAYGHGMIPCARAARKAGASWLG 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGV 120 + EE + LR R+ G + + ++ S + + +CG Sbjct: 63 AATPEEALGLRAAGDTGRLMCWLWTPGGPWRQAIEADIDVSASGLWALREAVAAARACGR 122 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSV 177 + L+ DTG R G + + + + SH ACAD+P Sbjct: 123 TARLHLKADTGLGRSGCQPADWPALVDEARAAEAEGAIRVTGLWSHFACADEPGHPSIGA 182 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----K 228 QL FR +++H + LA+S L P HF L R GI+ YG + Sbjct: 183 QLSVFREMVAHAEQAGLRPEVRHLANSPATLTVPESHFDLVRTGIATYGISPSPELGTAA 242 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V+T A + +++ G VSYG + ++ +A+ +GY DG P SG Sbjct: 243 DFGLRPVMTLSAALASVKRVPGGHGVSYGHRYVTPGETTLALVPVGYGDGIPRHASGT-- 300 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 G + G I G + MD + D+ + GD +FGP + + Sbjct: 301 ---------GPVLVAGKWRTIAGTVAMDQFVVDLGGD-TAAPGDEAVLFGPGDRGEPTAE 350 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D A A G+ Y+++ RI R + Y Sbjct: 351 DWARAVGSIAYEIVTRISARIPRVY 375 >gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19] gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3] gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19] gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3] Length = 821 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 150/369 (40%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N++ L + +VK YG G ++A L V +E Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 G +LR I V+ + + V S + G++ +P + Sbjct: 523 GAELRKEGISIPIIVMNPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIHI 582 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + SHLA +D QL++F Sbjct: 583 KIDTGMHRLGFQPEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTKA 642 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +S+GI Y + R GI LYG + K + T + Sbjct: 643 AGELENGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQKGLRNVS--TLKT 700 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AG+ + Y + RDS IA+ IGYADG S GG+ Sbjct: 701 TILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSNG----------GGEV 750 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G PI+G I MD M D+TD + GD + IFG ++ + +++ T Y++L Sbjct: 751 LINGQRCPIIGNICMDACMIDVTDIH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILTS 809 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 810 ISPRVKRVY 818 >gi|150009966|ref|YP_001304709.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Parabacteroides distasonis ATCC 8503] gi|255012771|ref|ZP_05284897.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides sp. 2_1_7] gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503] Length = 821 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 150/369 (40%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N++ L + +VK YG G ++A L V +E Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 G +LR I V+ + + V S + G++ +P + Sbjct: 523 GAELRKEGISIPIIVMNPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIHI 582 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + SHLA +D QL++F Sbjct: 583 KIDTGMHRLGFQPEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTKA 642 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +S+GI Y + R GI LYG + K + T + Sbjct: 643 AGELESGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQKGLRNVS--TLKT 700 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AG+ + Y + RDS IA+ IGYADG S GG+ Sbjct: 701 TILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSNG----------GGEV 750 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G PI+G I MD M D+TD + GD + IFG ++ + +++ T Y++L Sbjct: 751 LINGQRCPIIGNICMDACMIDVTDIH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILTS 809 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 810 ISPRVKRVY 818 >gi|148557977|ref|YP_001257844.1| alanine racemase [Brucella ovis ATCC 25840] gi|166919547|sp|A5VVI9|ALR_BRUO2 RecName: Full=Alanine racemase gi|148369262|gb|ABQ62134.1| alanine racemase [Brucella ovis ATCC 25840] Length = 396 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLPLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|154502763|ref|ZP_02039823.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149] gi|153796646|gb|EDN79066.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149] Length = 383 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 161/385 (41%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58 M + + +IDL A+ N M G A+ AVVK + YG G IA L + V Sbjct: 2 MEKHSRVYAEIDLDAISYNMEQMKKRVGEGAKFIAVVKTDGYGHGAVPIACMLDDDPDVW 61 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 + ++EE V+L Q VL + P Q + + + + ++ + Sbjct: 62 GYATATLEEAVELHRAGIQKPTMVLGCVFPDQYEEMIKEEVRATVYTLDMAHEISNLARK 121 Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + + +++DTG RLG +E+ D L + +H A AD+ + Sbjct: 122 LGKTAYFHIKIDTGMERLGFPATEESADLIGQIEKLPNVCLEGMFTHFAKADELDKTFSE 181 Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q +F + + + + +S+GI+ P + L R GI+LYG + Sbjct: 182 EQYRKFVWMRNEVEKRGISISQYHCDNSAGIIDFPQWKQNLVRAGIALYGLYPSEEVKKE 241 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ + + + +++ G +SYGG + +A +GY DGY LS Sbjct: 242 TVDLKPALRLVSHVSFVKEVEPGASISYGGTFTADKKMKVATIPVGYGDGYARGLSNR-- 299 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G+ I+G ILG++ MD M D+TD D + + G +I ++ Sbjct: 300 ---------GEVLIRGKRARILGRVCMDQFMVDVTDIPDTVFMDEVVLIGRDGDDEITVE 350 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +++ G NY+ + +G R + Y Sbjct: 351 ELSEICGRFNYEFVCCLGKRIPRVY 375 >gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Chitinophaga pinensis DSM 2588] gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588] Length = 834 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 161/369 (43%), Gaps = 18/369 (4%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L+A+ +N +L + A+VK +YG G +IA L GV V +E Sbjct: 473 LEINLSAVTHNVKQYQSLLKPGTKLMAMVKAFSYGSGSFEIANLLQFHGVDYLAVAYADE 532 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 GV LR I V+ + I+ + S F ++ G + P + Sbjct: 533 GVDLRRTGITMPIMVMNPEPSSFDAILQWNLEPEIYSLHLLKQFEEEVQLAGKTGFPVHI 592 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + +++ + SHLA ++DP Q + F + Sbjct: 593 KLDTGMHRLGFEKKDIPELARLLSDNIYLKVNSVFSHLAASEDPAMDAFTKQQGQLFFEM 652 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +A+S+ I P+ + R GI +YG ++ T + Sbjct: 653 SHELQKALGYTVIRHIANSAAIERHPDLQLDMVRLGIGMYGIDSANKIQDQLRPASTLKT 712 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + ++ G+ V YG + S+ A IGYADGYP LS GK Sbjct: 713 TVAQVKHLSTGDTVGYGAKWVAKGPSVTATVRIGYADGYPRRLSNG----------KGKM 762 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++G + P+ G + MDM M D+T+ + GD + +FG ++ + V+ + T Y++L Sbjct: 763 LVRGQLAPVAGVVAMDMLMLDVTNIPEVAEGDEVIVFGNELPVQQVSAWADTIPYEILTG 822 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 823 ISQRVKRVY 831 >gi|163845038|ref|YP_001622693.1| alanine racemase [Brucella suis ATCC 23445] gi|189027530|sp|A9WVT5|ALR_BRUSI RecName: Full=Alanine racemase gi|163675761|gb|ABY39871.1| alanine racemase [Brucella suis ATCC 23445] Length = 396 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG + ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTQAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|260599554|ref|YP_003212125.1| alanine racemase [Cronobacter turicensis z3032] gi|260218731|emb|CBA34079.1| Alanine racemase, biosynthetic [Cronobacter turicensis z3032] Length = 371 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 102/373 (27%), Positives = 168/373 (45%), Gaps = 19/373 (5%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S + + ++ AL++N + L+ ++ AVVK NAYG G + A L + F Sbjct: 11 KSMQAATVVVNRRALRHNLQRLRELAPASQLVAVVKANAYGHGLLETARTLPD--ADAFG 68 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V +EE ++LR I +L G + + + + + Sbjct: 69 VARLEEALRLREGGITQPILLLEGFFNADDLPAIAAQRLHTAVHSEEQLAALEQATLSEP 128 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 +++DTG +RLG+ + A F + + K + Q ++SH A AD+P QL+ Sbjct: 129 VTVWMKLDTGMHRLGVRPEAAQAFYNRLAACKNVRQPVNVVSHFARADEPDCGATERQLD 188 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVV 236 F + G + S+A+S GIL P HF RPGI LYG + Q + Sbjct: 189 IFNSFTHDKPG-KRSIAASGGILFWPQSHFDWIRPGIILYGVSPLDTHPWGAELGFQPAM 247 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + +I +R AGE V YGG RD+ + V A+GY DGYP Sbjct: 248 SLISSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPR-----------CAPT 296 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G VPI+G++ MDM D+ + GD + ++G + ++ +A +G + Y+ Sbjct: 297 GTPVLVNGREVPIVGRVAMDMICVDLGPDAPEKAGDTVVMWGEALPVERIAEVTGVSAYE 356 Query: 357 LLVRIGTRYAKFY 369 L+ R+ +R A Y Sbjct: 357 LVTRLTSRVAMRY 369 >gi|182436579|ref|YP_001824298.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465095|dbj|BAG19615.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 392 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 162/381 (42%), Gaps = 29/381 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N + + A+ AVVK + YG G A A AG + Sbjct: 8 RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAAREAGATWLGTATP 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR RI G + + ++ + + + + G + Sbjct: 68 QEALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSVGGMWALREVVAAAAAAGRTARI 127 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLER 181 L+ DTG R G + + + + + SH ACAD+P + QL Sbjct: 128 QLKADTGLGRGGCQPADWPELVGEALAAERAGRVEVTGLWSHFACADEPGHPSIAAQLAV 187 Query: 182 FRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 +R L+ + +G+E LA+S L P HF L R GI++YG + + Sbjct: 188 YRDLVAYAEKEGVEPEVRHLANSPATLTIPEAHFDLVRTGIAMYGVSPAPELGTSADLGL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+T A + L++ A AG +SYG T ++ + + +GYADG P SG Sbjct: 248 RPVMTLAASVALVKDAPAGHGISYGHHYTTTAETTLGLIPVGYADGVPRHASGT------ 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G + G + + G++ MD + D+ D E G +FGP + D A Sbjct: 302 -----GPVLVGGKVRRVAGRVAMDQFVVDL-DGDRPEAGAEAVLFGPGDRGEPTAQDWAE 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 A+GT Y+++ RIGTR + Y Sbjct: 356 AAGTIAYEIVTRIGTRVPRVY 376 >gi|256015684|ref|YP_003105693.1| alanine racemase [Brucella microti CCM 4915] gi|255998344|gb|ACU50031.1| alanine racemase [Brucella microti CCM 4915] Length = 396 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+L G + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALCGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|119471275|ref|ZP_01613778.1| alanine racemase 1, PLP-binding, biosynthetic [Alteromonadales bacterium TW-7] gi|119445741|gb|EAW27024.1| alanine racemase 1, PLP-binding, biosynthetic [Alteromonadales bacterium TW-7] Length = 359 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 105/370 (28%), Positives = 173/370 (46%), Gaps = 19/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I+LTAL +N + + N++ AV+K NAYG G KIA L + F V Sbjct: 2 RLATAEINLTALAHNLAQVKRFAPNSKVMAVLKANAYGHGLVKIAQHLND--ADAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR I +L G + I N I + Sbjct: 60 IDEALALRAGGLTKPIVLLEGFFNKDDLPILLANNFQTIIHDEYQLAALEEAELEAPLLC 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V+TG +RLG++ ++ +F +++H ACADD ++ + Q+ +F Sbjct: 120 WLKVNTGMHRLGIAPEQFDEFYKRLQKTPNANNTVNLMTHFACADDVNNTKTAQQISQFD 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 L+++ L++S+GI+ PN H RPG+ LYG + N + H ++ V+ Sbjct: 180 CLVNNINQAH-CLSNSAGIIAWPNAHGDWVRPGLMLYGVSPMANALGEQHQLKPVMRLTT 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I +R A E V YGG+ K + + +AV A+GY DGYP G Sbjct: 239 RVIAVRHVPANEAVGYGGRWKSDKATQLAVVAMGYGDGYPRHAK-----------EGTPV 287 Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I I+G + MDM DI + +I+VGD + ++GP++ ++++A + T Y+LL Sbjct: 288 VIGKQRYGIVGSVAMDMISVDIGQNEHNIKVGDRVTMWGPELPVEEIAQCADTIPYELLC 347 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 348 NITPRVSYEY 357 >gi|312199983|ref|YP_004020044.1| alanine racemase [Frankia sp. EuI1c] gi|311231319|gb|ADP84174.1| alanine racemase [Frankia sp. EuI1c] Length = 388 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 155/376 (41%), Gaps = 29/376 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL A++ + + A +G+A T AVVK + YG G A A +AG V +EE + Sbjct: 22 IDLDAVRASTAELVARAGSAATMAVVKADGYGHGMLPCARAALDAGATWLGVAVIEEALA 81 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQVD 129 LR + + S+ + S G L+ D Sbjct: 82 LRAAGITVPVMSWLMSPGEPLDAAIGAQIDLSASAPWALAEIAAAARSTGRPARVHLKAD 141 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRT-- 184 TG R G + + + + + + SH A AD P Q+ RF Sbjct: 142 TGLGRAGATDADWPGLCDAAAALRAEGVLDVVGVWSHFAFADAPGHPTVQGQIGRFTDAV 201 Query: 185 LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 I+ G+ LA+S+ L+ P HF L RPGIS+YG + + ++ + Sbjct: 202 EIAEKAGLRPEVRHLANSAATLVSPEAHFDLVRPGISIYGLSPGPDVGRSAELGLRPAMR 261 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 AR+ L ++ G VSY + ++ +A+ +GYADG P + L Sbjct: 262 LAARVALAKRVPPGTGVSYAHRYVTDSETTLALVPLGYADGVPRAATNL----------- 310 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 G+ + G I G + MD + D+ D + GD +FGP + DD A A GT Sbjct: 311 GEVLLAGRRRRIAGTVCMDQFVLDVGDD-QVAEGDEAVLFGPGDAGEPTADDWAAALGTI 369 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ RIG R + Y Sbjct: 370 NYEIVTRIGPRVPRIY 385 >gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B] gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B] Length = 821 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 149/369 (40%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N++ L + +VK YG G ++A L V +E Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 G +LR I V+ + + V S + G++ +P + Sbjct: 523 GAELRKEGISIPIIVMNPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIHI 582 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + SHLA +D QL++F Sbjct: 583 KIDTGMHRLGFQPEDVPAICERLRAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTKA 642 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +S+GI Y + R GI LYG + K + T + Sbjct: 643 AGELENGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQKGLRNVS--TLKT 700 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AG + Y + RDS IA+ IGYADG S GG+ Sbjct: 701 TILQIQNVPAGNSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSNG----------GGEV 750 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G PI+G I MD M D+TD + GD + IFG ++ + +++ T Y++L Sbjct: 751 LINGQRCPIIGNICMDACMIDVTDIH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILTS 809 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 810 ISPRVKRVY 818 >gi|37523387|ref|NP_926764.1| alanine racemase [Gloeobacter violaceus PCC 7421] gi|35214391|dbj|BAC91759.1| alanine racemase [Gloeobacter violaceus PCC 7421] Length = 381 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 115/377 (30%), Positives = 172/377 (45%), Gaps = 26/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++IDL AL++N + L + R AVVK +AYG G A AG V Sbjct: 8 RRAWVEIDLDALRHNVQQIRQRLRSHCRVMAVVKADAYGHGALSAGRAALEAGAACLGVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSH 122 ++EEG +LR I VL IH G E + P + + Q+ ++ +S H Sbjct: 68 TLEEGAQLRESGLGCPIVVLGPIHTGAEVAAVEHWRLEPTLCTPRQVLVCAEHLSA--PH 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P L++DTG RLG Q+A++F ++ Q++ + SHLA AD+P S Q RF Sbjct: 126 PVHLKIDTGMTRLGAPWQDAVEFVRLAYRLPRLQVASVYSHLATADEPDSAALGEQHRRF 185 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTV 235 ++ + + LA+S+ L P H+ L R G++LYG + ++ V Sbjct: 186 ERVLGELEAAGVRPECVHLANSAAALGDPGLHYDLVRVGVALYGLYPAPEFYGAAELRPV 245 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + AR+ +R+ A VSYG + S +A AIGYADG P LSG Sbjct: 246 MQVRARVTQVREVPADTGVSYGHFWRTPTPSRLATVAIGYADGVPRRLSGQL-------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + + G P +G ITMD + D T ++E GD + + G D I D A G Sbjct: 298 ---QVLVHGRRAPQVGAITMDQIVIDCTHLSAVEEGDVVTLLGRDGNEAIGAADWADPLG 354 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y++L R + Sbjct: 355 TIAYEILCGFKHRLPRV 371 >gi|254473465|ref|ZP_05086862.1| alanine racemase [Pseudovibrio sp. JE062] gi|211957581|gb|EEA92784.1| alanine racemase [Pseudovibrio sp. JE062] Length = 383 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 137/367 (37%), Positives = 208/367 (56%), Gaps = 9/367 (2%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +L IDLTAL++NW +N G+ T AVV K N YG G ++ LY+AG + FFV Sbjct: 20 AKLTIDLTALRSNWCYLNGKVGDGCTCAVVLKANGYGTGAAEVGKTLYHAGARVFFVALP 79 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EEG++LR P A I+VL G+ +EK +D +L PV++S+ ++ +S P Sbjct: 80 EEGIELRKELPHAEIYVLNGLFRHREKFYYDFDLKPVLNSLEEVAEWSSFAQSLQEELPA 139 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 AL DTG +RLG+S+ +AL ++ K ++ L++SHLACAD P +N QL RF+ Sbjct: 140 ALHFDTGMHRLGMSIGDALQIGESAHLLKSIRIDLVMSHLACADTPDHGLNEKQLNRFQR 199 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + + SL++S+GI LG +YHF + RPGI+LYGG ++++PM V +A II Sbjct: 200 VCELFPEARKSLSNSAGIFLGDDYHFDMVRPGIALYGGNPVPDETNPMLPVAHVQAEIIS 259 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ G+ V YG + R S IA GYADG + D + G + +I G Sbjct: 260 LREVPHGDPVGYGASRVTPRKSRIATINAGYADGLHRLVGSSDDQ-----PNGARVYIGG 314 Query: 305 YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 + PI G+++MDM D+TD + G ++I G + +D++A + T Y+LL +G Sbjct: 315 HFAPIFGRVSMDMIAVDVTDIPEEHLSRGAPVEIMGAHVNVDELAEFAQTIPYELLCSLG 374 Query: 363 TRYAKFY 369 RY + Y Sbjct: 375 ARYTRHY 381 >gi|183981139|ref|YP_001849430.1| alanine racemase, Alr [Mycobacterium marinum M] gi|183174465|gb|ACC39575.1| alanine racemase, Alr [Mycobacterium marinum M] Length = 388 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 162/379 (42%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+ +N + +G+A+ AVVK + YG G +A AG + V SV Sbjct: 13 LAEAVVDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASV 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ ISS+ Q G + Sbjct: 73 DEALTLRADGITAPVLAWLHAPGMDFGPALAADVQIAISSIRQLDEVLDAARRTGTTATV 132 Query: 125 ALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG NR G++ E + + + +L +++H+ AD P +N +Q +R Sbjct: 133 TVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQSQR 192 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F+ + H + A L++SS + P+ L RPGI++YG + + Sbjct: 193 FKQMFDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPRLGDMGLVPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG D+ +A+ IGYADG +L G Sbjct: 253 MTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADGVFRSLGGRL-------- 304 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G++ MD + D+ + GD +FGP + D A Sbjct: 305 ---EVLINGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTAQDWADLV 361 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 362 GTIHYEVVTSPRGRITRVY 380 >gi|282895986|ref|ZP_06304017.1| Alanine racemase region protein [Raphidiopsis brookii D9] gi|281199096|gb|EFA73966.1| Alanine racemase region protein [Raphidiopsis brookii D9] Length = 385 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 106/381 (27%), Positives = 173/381 (45%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL NN + LS + AVVK +AYG G +A + AG V Sbjct: 12 SQRAWVEIDLGALSNNVKQLVGFLSPGTQLMAVVKADAYGHGAITVATTVLAAGATWLGV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMS---C 118 +V EG++LR +A I +L + P Q I L P + S Q +S+ ++ Sbjct: 72 ATVTEGIQLREAGIKAPILILGATYTPEQIHAITSWQLEPTLCSPGQALIFSQFLNSIDH 131 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++DTG +RLG Q+A F ++ + SH A AD P + + Q Sbjct: 132 NYKLPVHIKLDTGMSRLGAEWQQAGQFAQFVQELPRLHIASVYSHFATADSPDTTIMEQQ 191 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 RF+ I+ + LA+S+ L H+ + R G+++YG ++ + +Q Sbjct: 192 HGRFQQAIAQIRARGIKIPSLHLANSAATLGDKELHYDMVRAGLAIYGLYPAAHQRNYLQ 251 Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +ARI I+ G VSYG + R+ I V IGYADG P LS Sbjct: 252 LRPALQVKARITHIKTISKGTGVSYGHKFIAPREMRIGVVGIGYADGVPRGLSNQM---- 307 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + ++G+ V +G ITMD M DI+ + ++ G+ + + G I DD A Sbjct: 308 -------EVLVQGHRVQQIGMITMDQLMIDISPLVEVQEGEIVTLLGEQGEEKITADDWA 360 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T +++++ R + Sbjct: 361 NQLNTISWEIICGFKHRLPRV 381 >gi|257054529|ref|YP_003132361.1| alanine racemase [Saccharomonospora viridis DSM 43017] gi|256584401|gb|ACU95534.1| alanine racemase [Saccharomonospora viridis DSM 43017] Length = 378 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 165/374 (44%), Gaps = 26/374 (6%) Query: 1 MHSNEFLRLKI--DLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M R ++ DL A+++N + A + A T AVVK + YG G +A A AG Sbjct: 1 MSGMSLPRAEVVVDLEAIRHNVRLLASRAAASGAETMAVVKADGYGHGAVPVARAAVEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKL 115 V S++E + LR R+ + ++ +SS + Sbjct: 61 ATWLGVASLDEALALRNAGLTTRLMSWLDTPDVDFAPAVERDIDVSVSSTGELARAVDAA 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G L++DTG +R G + + + ++ + SHLACAD+P Sbjct: 121 ARVGRRARVHLKIDTGLSRNGCPAELWPTLVKAAAAEDGVEVVGMWSHLACADEPGHPAT 180 Query: 176 SVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q ERF + + LA+S+ L P+ HF L RPGI++YG +++ Sbjct: 181 EAQAERFAAAYAVAREAGLSPLRHLANSAATLTRPDLHFDLVRPGIAVYGLNP-VSQPED 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ +T + ++L ++ AGE VSYG + D+ +A+ +GYADG P TLSG S Sbjct: 240 LRPAMTFRSSVVLTKRIRAGESVSYGQTWTASADTTVALVPVGYADGVPRTLSGRLS--- 296 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 ++ G P++G++ MD + D D E+G + +FG + A Sbjct: 297 --------VWLNGTRRPVVGRVCMDQLVVDCGDDEP-ELGAEVVLFGTGEGGMPTATEWA 347 Query: 348 LASGTTNYDLLVRI 361 GT +Y+++ + Sbjct: 348 EKIGTIDYEIVTGM 361 >gi|332994605|gb|AEF04660.1| alanine racemase [Alteromonas sp. SN2] Length = 355 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 163/365 (44%), Gaps = 15/365 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I A+ +N+ + L+ +R+ AVVK +AYG G ++ L + F V Sbjct: 2 SRQTQAIIHADAILSNFKLLAELAPTSRSMAVVKADAYGHGAVNVSRILQHVS-PRFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR A I VL G H +E + ++ ++ + Sbjct: 61 IIEEAIALREAGITAPIVVLEGAHQAKECAMAASHGCILVMHNQAQLEWMLACPEDRRPT 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+ D+G +RLG L + +++HLACADD S+ QL F Sbjct: 121 IWLKADSGMHRLGFVLNTLPSIVKQYASLITQDTV-LVTHLACADDTSNDFTQKQLSAFL 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 I+ + S+A+S + P R GI++YGG + + +T + II Sbjct: 180 Q-IATQLALPVSIANSPATIEWPQSRGDWNRLGIAVYGGQPNT-ANVALAPTMTLRSSII 237 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R GE V YG +DS IA IGYADGYP G + Sbjct: 238 ALRDVPKGESVGYGQNWVAQKDSRIATVGIGYADGYPRHCPN-----------GTPVAVN 286 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G + G+++MDM D+T ++ +GD ++++G ++ +++VA A+ + +Y+LL R+ Sbjct: 287 GERAGLAGRVSMDMITIDVTHISNVNIGDRVELWGENVPINEVAEAADSIDYELLTRVSA 346 Query: 364 RYAKF 368 R + Sbjct: 347 RVPRI 351 >gi|148360608|ref|YP_001251815.1| hypothetical protein LPC_2554 [Legionella pneumophila str. Corby] gi|226711052|sp|A5IGG9|ALR_LEGPC RecName: Full=Alanine racemase gi|148282381|gb|ABQ56469.1| hypothetical protein LPC_2554 [Legionella pneumophila str. Corby] Length = 357 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 172/366 (46%), Gaps = 17/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+ +AL +N + L+ + A+VK NAYG G ++AP L + ++ F V Sbjct: 2 SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + +R + + G+ E + N + Q + Sbjct: 61 CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAQQLEWLIKTPLPYPIK 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++V+TG +RLG + E + + +++HLACAD+P N Q+ F Sbjct: 121 VWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKSIGLMTHLACADEPHRPENQQQISLF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 + IS + S+A+S+ I+ P+ + RPGI LYG + N+ + V+ Sbjct: 181 QE-ISIPGFRQRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNAHDLGLIPVMRFM 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I I + V YGG K + S I V A GY DGYP +S Sbjct: 240 SAISAIHDNPSFAQVGYGGTWKSDKPSRIGVVAAGYGDGYPRHIS-----------EKTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +++G V I+G+++MDM D+T+ +E+GD ++++G + ++ +A ++GT Y+LL Sbjct: 289 VWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTVGYELLC 348 Query: 360 RIGTRY 365 +I R Sbjct: 349 QISERV 354 >gi|315125720|ref|YP_004067723.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas sp. SM9913] gi|315014234|gb|ADT67572.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas sp. SM9913] Length = 359 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 170/370 (45%), Gaps = 19/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I+L AL +N + + N++ AV+K NAYG G KIA L + F V Sbjct: 2 RLAIAEINLQALAHNLAQVRQFAPNSKVMAVLKANAYGHGLVKIAQHLND--ADAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR I +L G + I N I + Sbjct: 60 IDEALALRAGGLTKPIVLLEGFFHQDDLPILLANNFQTIIHDENQLRALENAKLDAPISC 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG++ + DF +++H + ADD + + Q+ F Sbjct: 120 WLKINTGMHRLGVAPTQLNDFYQRLQATDNAKDTINLMTHFSSADDVNDPKTAEQIALFD 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 +L+ + LA+S+GI+ P H + RPG+ +YG + +N K H ++ V+ Sbjct: 180 SLVQGKQQAH-CLANSAGIIAWPAGHGEWVRPGLMMYGVSPMLNTSGKDHQLKPVMRLTT 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I IR A + V YGG + + + +AV A+GY DGYP G Sbjct: 239 KVIAIRDVDAAQGVGYGGSWQSAQPTKLAVVAMGYGDGYPRHAK-----------HGTPV 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G I G I+MDM DI ++ I+VGD + ++GP++ ++++A + T +Y+LL Sbjct: 288 VIAGKRYGIAGNISMDMISVDIGENADGIKVGDEVVMWGPELPVEEIAQCADTISYELLC 347 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 348 NITPRVSYEY 357 >gi|295136431|ref|YP_003587107.1| alanine racemase [Zunongwangia profunda SM-A87] gi|294984446|gb|ADF54911.1| alanine racemase [Zunongwangia profunda SM-A87] Length = 368 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 107/376 (28%), Positives = 159/376 (42%), Gaps = 21/376 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + L+IDL +L++N+ + + + AVVK AYG IA L AG+ Sbjct: 1 MPKAQETVLEIDLKSLEHNYQYLRSKVEPTVKMMAVVKAFAYGSDSVTIAAKLEKAGIDH 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V +EG LR + + VL+ P ++ D L P + S LT + K Sbjct: 61 FAVAYTKEGETLRAGGIEKPVLVLHP-QPHNLTLLIDNCLTPSLYSKHILTEFIKTAEAL 119 Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 +P + ++TG NRLG L+E N +L I SHLA ++D Sbjct: 120 KLKEYPVHININTGLNRLGFGLEEIDQVITLFKNTLAVRLVGIYSHLAASEDLAEKEFTQ 179 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+E F+ + I L ++SGIL P F + R GI LYG + + Sbjct: 180 GQIETFKKASGKILKAFDHKIMRHLCNTSGILNYPEATFDMVRTGIGLYGYGNSAQEDKK 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V T + I I A E V Y RD+ A IG+ADG Sbjct: 240 LKPVGTLKTIISQIHNIKAEESVGYNRAFIAKRDTTTATLPIGHADGISRIYG------- 292 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 I PI+G + MDM M D+T + GD + IFG + + +A +G Sbjct: 293 ---KQKTAVLINDKEAPIIGNVCMDMIMVDVTGI-ECKEGDQVIIFGKERSAEKLANNAG 348 Query: 352 TTNYDLLVRIGTRYAK 367 T +Y+L+ I R + Sbjct: 349 TISYELITSISQRVKR 364 >gi|146340278|ref|YP_001205326.1| putative alanine racemase (alr) [Bradyrhizobium sp. ORS278] gi|146193084|emb|CAL77095.1| putative alanine racemase (alr) [Bradyrhizobium sp. ORS278] Length = 393 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 182/365 (49%), Gaps = 11/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + + A A V+K +AYG G ++A L AG + FFV ++ E Sbjct: 27 LTIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLGEA 86 Query: 69 VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 R P+ A ++VL G N PVI + +L + G A+ Sbjct: 87 KIARSALPEPAALYVLDGFFQNTGDDYAAINCRPVIGDLNELAEWDMFCRRTGWKGGAAI 146 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTG NRLGL+ +A ++L++SHLA A+ +S N+ QL FR + Sbjct: 147 HVDTGMNRLGLTPIDAQGMI-PRIQSGDHGITLVMSHLASAEQVNSPANARQLATFREVA 205 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 S + G+ A+LA+SSGI LG ++HF + RPG +LYG +PMQ V +ARI+ +R Sbjct: 206 SVFTGVPAALAASSGIFLGASFHFDMVRPGAALYGVNPTPEADNPMQPVAEIKARIVQLR 265 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G+ V YGG R + IA+ + GYADGY S D G + G Sbjct: 266 DLARGDAVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTR------GADVIVAGQR 319 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P+ G+++MD+ D+TD G + + G I +D++A GT Y++L +G R Sbjct: 320 CPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGISVDELAHHFGTIGYEVLTNLGRR 379 Query: 365 YAKFY 369 Y + Y Sbjct: 380 YHRIY 384 >gi|261367671|ref|ZP_05980554.1| alanine racemase [Subdoligranulum variabile DSM 15176] gi|282570464|gb|EFB75999.1| alanine racemase [Subdoligranulum variabile DSM 15176] Length = 395 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 160/378 (42%), Gaps = 25/378 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +IDL AL++N+ + G AVVK +AYG G +A L G F V+ + E Sbjct: 11 WAEIDLDALRHNFAFIKRTIGGP-VCAVVKADAYGHGDIVVARVLQEEGAAAFAVSCLAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 +LR + + +L P + + + S+ + ++ GV L Sbjct: 70 AKRLRRHGITVPVLILGYADPSEASALAQEDIATACFSTEYAKALSAAAVAAGVQVKVHL 129 Query: 127 QVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQL 179 ++DTG R+G Q + + + I H A AD + Q Sbjct: 130 KIDTGMGRIGFAAQSDWQAVVRELEALCSLPGLSICGIFQHFAVADSLEPDAQTYTDNQY 189 Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-Q 233 FR ++ + A+S+ L P + +TR GI LYG P+ + Sbjct: 190 TLFRKVVDQLQADGYDTGTVHCANSAAQLRHPEWRNDMTRAGIILYGLDPSDELHFPVLK 249 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T + + ++ L G+ VSYG +A A +GYADGYP LSG + Sbjct: 250 PVMTLKCIVTFVKDLLPGQSVSYGRTFTAKAPMRVATACVGYADGYPRMLSGSQGQ---- 305 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDVALASG 351 G + G P+LG++ MD T+ D+T+ + +GD + +FGP D +A + Sbjct: 306 ----GLMMVNGRPAPVLGRVCMDQTLLDVTNIPGVRMGDEVTVFGPGAPDTADTIARKTD 361 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+++ I R + Y Sbjct: 362 TISYEIVCGIARRVPRVY 379 >gi|15837454|ref|NP_298142.1| alanine racemase [Xylella fastidiosa 9a5c] gi|9105760|gb|AAF83662.1|AE003925_2 alanine racemase [Xylella fastidiosa 9a5c] Length = 365 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 167/373 (44%), Gaps = 19/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S IDL AL++N+ L G + AVVK +AYG G + A AL V F Sbjct: 1 MCSVRPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR QA I +L G +E + + + + + Sbjct: 59 AVACIEEALELRQAGIQAPILLLEGFFEAEELELIAKHNLWTVIASSWQVRALAAFHSPS 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++D+G +RLGL +E D + ++++HLA AD+ + + Q Sbjct: 119 PIGVWLKLDSGMHRLGLEPKEFRDAWMSLHRLPQVGEIVLMTHLARADELDNPRTNEQAS 178 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVV 236 F AS+ +SSG+L + RPG+ LYG +S P++ V+ Sbjct: 179 VFAQASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPIPQESTSLSGPLRPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +R+I + + AGE V YG R + + V A+GYADGYP Sbjct: 238 MVYSRLIAVHELPAGEPVGYGACFVTERPTRVGVVAMGYADGYPYFAVN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y Sbjct: 287 GTPLLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQ 346 Query: 357 LLVRIGTRYAKFY 369 LL + R ++Y Sbjct: 347 LLCGL-KRVRRYY 358 >gi|220906119|ref|YP_002481430.1| alanine racemase [Cyanothece sp. PCC 7425] gi|219862730|gb|ACL43069.1| alanine racemase [Cyanothece sp. PCC 7425] Length = 387 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 107/391 (27%), Positives = 169/391 (43%), Gaps = 40/391 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E +++DL AL N + L S + AVVK +AYG G +A + G V Sbjct: 8 ERAWVEVDLAALGENTRRIKGLLSPSTELMAVVKADAYGHGAVMVARKVLQQGASSLGVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ EG++LR A I V ++ + + I L +SS Q +S+ + Sbjct: 68 TIAEGIELRQAGIDAPILVFGAVNTLAEVQAIAQWQLQATLSSPKQALIFSRHLEH--PC 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P L +DTG RLG +++L+ + L+ + SHLA AD Q +F Sbjct: 126 PVHLVIDTGMGRLGCPQEQSLELIKFVYGLPHLTLAGLCSHLAMADAIDPSCMEQQRCQF 185 Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTV 235 ++ + LA+S+ L P +H+ L R G++LYG + + Q V Sbjct: 186 EQVVQQVRCAGIPLPPLHLANSAATLRSPQFHYNLVRVGLALYGLYPAPHLRSRVELQPV 245 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ARI L++ AG VSYG Q + IAV IGYADG P LS S Sbjct: 246 LQVRARITLVKTIAAGSGVSYGHQFVAPQPMRIAVVGIGYADGVPRNLSNRMS------- 298 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--------------- 340 ++G V +G ITMD + D+T +++ GD + + G D Sbjct: 299 ----VLLRGQRVAQIGVITMDQLIIDVTGVENVQEGDVVTLIGEDGEDPGATPSRSGQPQ 354 Query: 341 ---IKLDDVALASGTTNYDLLVRIGTRYAKF 368 I +++ A GT ++++L R + Sbjct: 355 VERITVEEWAHTLGTISWEILCNFKQRLPRI 385 >gi|332140005|ref|YP_004425743.1| alanine racemase [Alteromonas macleodii str. 'Deep ecotype'] gi|254802359|sp|B4S1A6|ALR_ALTMD RecName: Full=Alanine racemase gi|327550027|gb|AEA96745.1| alanine racemase [Alteromonas macleodii str. 'Deep ecotype'] Length = 358 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 178/368 (48%), Gaps = 18/368 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I AL +N+ ++ A++ ++++ AVVK +AYG G +A L + F V Sbjct: 2 SRQTQAIIHADALLHNFKALAAIAPSSQSMAVVKADAYGHGAVNVARILQHVS-SQFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE + LR A + VL G + ++ F N I V+ QL + + H Sbjct: 61 IIEEAIALRDAGISAPVVVLEGAHQAKECQMAFQHNCILVMHCEEQLQWLNNCPENQRPH 120 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG ++ + D T + L + ++I +H ACADD + + QL F Sbjct: 121 -IWLKVDSGMHRLGFAISDIEDMTKKYRHL-LSEQTVIATHFACADDVDNGFTASQLSAF 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEA 240 + ++ G+ S+A+S + P R G+ +YGG + + +T + Sbjct: 179 KR-VADAIGLPTSVANSPATVNWPASRNAWNRLGVGVYGGAVSTANNVGVEIYPAMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ +R AGE V YG + ++ S IA IGYADGYP Sbjct: 238 SILAVRTIAAGEGVGYGQRWVASKPSKIATVGIGYADGYPRHCKN-----------KTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++G + G+++MDM D+T ++ VGD ++++G ++ + +VA + T +Y+L+ R Sbjct: 287 MVRGKRAFLAGRVSMDMITIDVTHIDNVSVGDEVELWGQNVPIQEVAACADTIDYELMTR 346 Query: 361 IGTRYAKF 368 + R + Sbjct: 347 VSQRVPRI 354 >gi|212638046|ref|YP_002314566.1| D-alanine racemase [Anoxybacillus flavithermus WK1] gi|226711025|sp|B7GFP5|ALR_ANOFW RecName: Full=Alanine racemase gi|212559526|gb|ACJ32581.1| D-alanine racemase [Anoxybacillus flavithermus WK1] Length = 385 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 144/377 (38%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +IDL A+ N SM G + AVVK NAYG G ++A AG V + Sbjct: 9 TWAEIDLDAIFYNVQSMKQHVGSHVEVIAVVKANAYGHGDIQVAKTALEAGATRLAVAFL 68 Query: 66 EEGVKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E + LR I VL P + N+ + Sbjct: 69 DEALALRKKGISLDVPILVLGATKPQYAPLAASQNIALTVFRADWFEQAIVYAPYEQPLN 128 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++DTG RLG +E + L + +H A AD+ + S Q + F Sbjct: 129 VHMKLDTGMGRLGAKTKEEVQQMIYAIEQHPSFILEGVYTHFATADEQNIDYFSFQYDTF 188 Query: 183 RTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236 ++ + A+S+ L P+ F R GIS+YG +P++ Sbjct: 189 LHMLEWLSIQPPLIHCANSAAGLRYPDRIFNAVRFGISMYGLAPSQEMKSLLPYPLKEAF 248 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +R+ ++K GE +SYG + D I IGYADG+ + Sbjct: 249 SLHSRLTHVKKVKGGEKISYGATYEAETDEWIGTVPIGYADGWLRRMQHFS--------- 299 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + G PI+G++ MD M + + VG + + G I +DDVA T Sbjct: 300 ---VLVDGKRAPIVGRVCMDQMMIRLP--YELPVGTKVTLIGEQQGDRISVDDVAAHVNT 354 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++ I R + + Sbjct: 355 INYEIPCTISYRVPRIF 371 >gi|168184689|ref|ZP_02619353.1| alanine racemase [Clostridium botulinum Bf] gi|237795085|ref|YP_002862637.1| alanine racemase [Clostridium botulinum Ba4 str. 657] gi|182672221|gb|EDT84182.1| alanine racemase [Clostridium botulinum Bf] gi|229263448|gb|ACQ54481.1| alanine racemase [Clostridium botulinum Ba4 str. 657] Length = 389 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 162/384 (42%), Gaps = 27/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 3 RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRHS 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V + E ++LR I +L P + I + N+ PV+ S SK S Sbjct: 63 VACLSEAIELREGGITCPINILGITPPTLFEDIINYNIEPVVFSYDYANQLSKAASLKNR 122 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG E+L+ N ++ + SH + +D+ + Q Sbjct: 123 IVKTHIAVDTGMGRLGFDPTVESLEEIKRIQNLSNIKIEGLCSHFSSSDEKDKSYSEYQF 182 Query: 180 ERF----RTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 + F + LI I +S+ I+ P+ + R GI LYG ++ Sbjct: 183 KIFQNFRKKLIEMNMKIPIHHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSREVNKENLH 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T +A I+ I+ +G+ V Y + K R S IA+ +GY DGY LS Sbjct: 243 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345 GK I G PI+G I MD M D+TD ++VGD + I G D +D Sbjct: 298 ------GKVIINGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGRDDINNLRYDAED 351 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A G T+ +++ I R + Y Sbjct: 352 IASKVGMTSGEIMSIISKRVPRVY 375 >gi|309777766|ref|ZP_07672714.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53] gi|308914450|gb|EFP60242.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53] Length = 382 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 167/388 (43%), Gaps = 31/388 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 SN L+IDL+ + +N + L + + A+VK N YG G + A + G+ F Sbjct: 4 SNTRSWLEIDLSRISHNIKEVQKLLPSTSKIMAIVKANGYGHGDVECARVMEQQGIDFFG 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120 V+SV+EGV+LR + Q+ I VL P + + +LI + S+ + + Sbjct: 64 VSSVDEGVRLREHGIQSPILVLGYTPPVHFHYLHEASLIQTLVSLEYAQKLNAYGRKHDI 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA------CADDPSSHV 174 +VDTG +R+G+ QE + + + C D+ + Sbjct: 124 VIKAHAKVDTGMSRIGIVAQEHAYHIEDIKALYHMDHIAVCGIFSHFSVSDCLDEENCRF 183 Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 Q+ F +++ + L +S GIL PN + RPG+ G T Sbjct: 184 TDHQIALFDRVLADLRAAGIDPGTTHLQNSYGILNYPNLKYDYVRPGLLWMGVTSDDAVE 243 Query: 230 HP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 Q ++ +A + L+++ G VSYG K + +A A+GYADG+P ++S Sbjct: 244 IRTAPQFQPIMEWKANVSLVKEIQPGVTVSYGRHFKAKECTRVATLAVGYADGFPRSVSN 303 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341 G + G VPI+G I MD M DIT +++ GD + G D + Sbjct: 304 K----------GACVLLHGKRVPIIGNICMDQMMVDITGLDAVQEGDVATLIGSDGEETL 353 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +D+++ + T N + L I R + Y Sbjct: 354 PVDELSRLAKTINNETLCWISQRVPRIY 381 >gi|89889690|ref|ZP_01201201.1| alanine racemase [Flavobacteria bacterium BBFL7] gi|89517963|gb|EAS20619.1| alanine racemase [Flavobacteria bacterium BBFL7] Length = 367 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 169/372 (45%), Gaps = 21/372 (5%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL+++L AL++N+H + L + AVVK NAYG G IA L V F V V Sbjct: 6 TRLEVNLAALEHNFHYLKSKLQSGVKFMAVVKANAYGHGAVAIAHRLQELDVDYFAVAYV 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HP 123 E V+LR + I VL+ + + PVI S+ L + + +P Sbjct: 66 SEAVELRNNGIKKPILVLHA-QAFTLNTCIERCIEPVIYSIEMLDAFIAIAQDKQQSAYP 124 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERF 182 L+ +TG NR+G+ ++ + + ++ + SHLA ++D + + Q+E F Sbjct: 125 IHLEFNTGLNRIGIDFKDIDEVISKVTSNSSIKVRGLQSHLAASEDLNELDFTNSQIELF 184 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + + +++SGIL + HF + R GI LYG + ++ V + Sbjct: 185 KEINARLEKALPYPFLKHESNTSGILNYKDAHFSMVRSGIGLYGFGNDHTFDKQLKPVAS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ I R AGE VSY + + + AV A+G+ DG + Sbjct: 245 LKSVISQTRWIEAGESVSYNRKFIAQKRTQYAVIALGHGDGINRIYG----------YGK 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + I G + P LG I MDM M DIT+ VGD + IF + ++A +GT +Y++ Sbjct: 295 AQVSINGKLAPTLGIICMDMFMVDITNI-DCYVGDEVIIFNQEFTAREMAEKAGTISYEI 353 Query: 358 LVRIGTRYAKFY 369 L I R + Y Sbjct: 354 LTGIQKRVPRIY 365 >gi|86159846|ref|YP_466631.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776357|gb|ABC83194.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C] Length = 395 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 19/373 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL +N + A + AR AVVK NAYG G A AG V Sbjct: 14 RPVWAEIDLDALAHNVRLLAARASPARLYAVVKANAYGHGAVACGRAALEAGAHGLAVVC 73 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 V+E +LR A + V+ + L P + ++ + S G P Sbjct: 74 VDEAEELRRAGLDAPLLVIGHTPASDAARVVALGLRPAVGAMDLVEALSAEAGRRGAEVP 133 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NR GL+ + + ++ + +H A A++ Q E R Sbjct: 134 IHLELESGLNRHGLTPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRAQFEVLR 193 Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240 + E A+S+ ILL + R G+SLYG ++ V++ A Sbjct: 194 DTSRRLPWVPERHCAASASILLDHEMALEAVRGGLSLYGYRPAPWCGTDADLRPVMSLRA 253 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+ + + G V YG R + +A+ GYADGY + + Sbjct: 254 RVARVSEIDRGATVGYGRTWAANRATRVALVMCGYADGYRRSFGNR-----------TQV 302 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 + G P++G++ MDM M D+T + GD + + G D + DD+A + T +++ Sbjct: 303 LVHGRRAPVVGRVAMDMCMVDVTAVPGVAAGDVVTLIGRDGDERVDADDLATIADTISWE 362 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 363 ILAGISARVPRLY 375 >gi|145627697|ref|ZP_01783498.1| alanine racemase [Haemophilus influenzae 22.1-21] gi|144979472|gb|EDJ89131.1| alanine racemase [Haemophilus influenzae 22.1-21] Length = 360 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 174/364 (47%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK N + + N++ AVVK NAYG G +A L + V F V Sbjct: 4 KPATAKISSHALKQNLEIIKQKAPNSKIIAVVKANAYGHGVVFVASTLEQS-VDCFGVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G Q+ I N I + + K + Sbjct: 63 LEEALALRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLDALKRANLPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG++L E F ++ +SH + AD+ S +Q+ RF Sbjct: 123 WLKIDTGMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 ++ +G E ++A+S GIL P+ H + RPGI +YG + I K + V+ + Sbjct: 183 SVTKDKQG-ERTIAASGGILFWPDSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V YGG RD+ I V A+GY DGYP +V G + Sbjct: 242 LIAVRHHKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYP-----------SNVPEGTPIY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VPI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ Sbjct: 291 LNGRLVPIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|296100680|ref|YP_003610826.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055139|gb|ADF59877.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 359 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 165/368 (44%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFEAADLPTIADQHLHTAVHNEEQLSALETAELSEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + A F K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEHAQAFYQRLCQCKNVRQPVNIVSHFARADEPDCGATEQQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G+ S+A+S GILL P HF RPGI LYG + Q V++ ++ Sbjct: 182 CEGKPGMR-SIAASGGILLWPQSHFDWARPGIILYGVSPLENRPWGPDFGFQPVMSLVSK 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWTSARDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G V I+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVKIVGRVAMDMICVDLGPDAQDKAGDDVVMWGDGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|295104133|emb|CBL01677.1| alanine racemase [Faecalibacterium prausnitzii SL3/3] Length = 400 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 157/394 (39%), Gaps = 35/394 (8%) Query: 1 MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M F + +IDL AL+ N+ + A +G AVVK ++YG G + A G Sbjct: 1 MQKQPFEKHVWAEIDLEALRYNFREVKARAGALPLCAVVKADSYGHGAVQCARVFAEEGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 V+ + E V+LR I +L + P + ++ S+ Q S+ Sbjct: 61 AWLAVSCLTEAVQLRKAGQTLPILILGHVQPAYAAALIQNDITVACYSLAQARALSEAAV 120 Query: 117 SCGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 + G L+ DTG R+G A+ + +++ + H + ADD + Sbjct: 121 AAGGKVHIHLKADTGMGRIGFALRTDFDAAIREMLEACALPGLEMTGLFQHFSVADDTAP 180 Query: 173 H---VNSVQLERF-----RTLISHYKGIEASLASSSGILLGPNYH------FQLTRPGIS 218 + Q F + + +S+G++L P++ + RPGI Sbjct: 181 ENVAYTAEQHALFVKAFHALKAAGREPALVHCDNSAGVMLHPDWPEGLPRERCMARPGII 240 Query: 219 LYGGTDKINKSHPMQTV-VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 LYG +T + + +I++ G+ SYG + + + +A GYAD Sbjct: 241 LYGYDPSDEVRFGRFKPVMTLKTVVSMIKEMQPGQCASYGRRFTAEKPTKVATLCTGYAD 300 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP LS G I G P+LG++ MD M D+TD + D ++ Sbjct: 301 GYPRLLS----------CGKGVVEIHGKACPVLGRVCMDQMMVDVTDVPEVREDDEAILW 350 Query: 338 GPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369 G + + +A + T Y++L + R + Y Sbjct: 351 GGTVSDTAETIARKTDTIPYEVLCGVSRRVPRVY 384 >gi|311896524|dbj|BAJ28932.1| putative alanine racemase [Kitasatospora setae KM-6054] Length = 394 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 160/384 (41%), Gaps = 32/384 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL AL++N ++ A + A AVVK +AYG G + A AG + Sbjct: 17 RAEATVDLAALRDNLAALRARTSGAELMAVVKADAYGHGALRCAREAVAAGAGWLGTATP 76 Query: 66 EEGVKLRLYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121 EE + LR QARI G ++ IS + + GV Sbjct: 77 EEALALRAAGIGPEQARILCWLWTPGGPWARALRESVDISISGQWALDELLAAVRETGVP 136 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R G + D N+ + L ++ + SH A AD+P Q Sbjct: 137 ARVHLKADTGLGRNGCQPHDWPDLVENAVKAQAAGLLRVVGVWSHFAAADEPGHPSIQAQ 196 Query: 179 LERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229 L+ F ++ LA+S LL P H+ L RPG+++YG + + Sbjct: 197 LDSFAQALAFAERTGVDPEVRHLANSPATLLLPQSHYDLVRPGLAMYGLSPVPDVGAPAD 256 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ AR+ L+++ G +SYG + + + + +GYADG P S Sbjct: 257 FGLRPVMSLAARLALVKRVPGGHGISYGHHYTTSGPTTLGLVPLGYADGVPRHASNT--- 313 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G I + G++ MD + D+ L +VG+ + +FG + +D Sbjct: 314 --------GPVQIGSSWYRVAGRVAMDQFVVDLGGDLP-DVGEEVLLFGSGERGEPTAED 364 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A A GT Y+++ RIG R + Y Sbjct: 365 WARACGTIAYEIITRIGGRVPRRY 388 >gi|296106326|ref|YP_003618026.1| alanine racemase [Legionella pneumophila 2300/99 Alcoy] gi|295648227|gb|ADG24074.1| alanine racemase [Legionella pneumophila 2300/99 Alcoy] Length = 357 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 173/366 (47%), Gaps = 17/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+ +AL +N + L+ + A+VK NAYG G ++AP L + ++ F V Sbjct: 2 SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + +R + + G+ E + N I Q + Sbjct: 61 CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACILHHAQQLEWLIKTPLPYPIK 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++V+TG +RLG + E + + +++HLACAD+P N Q+ F Sbjct: 121 IWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIGLMTHLACADEPHRPENQQQISLF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 + IS + S+A+S+ I+ P+ H + RPGI LYG + N+ + V+ Sbjct: 181 QE-ISIPGFRQRSIANSAAIISFPDSHADVVRPGIMLYGVSPFANQNARDLSLIPVMRFM 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I I + V YGG K + S I + A GY DGYP +S Sbjct: 240 SAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS-----------EKTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +++G V I+G+++MDM D+T+ +E+GD ++++G + ++ +A ++GT Y+LL Sbjct: 289 VWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTVGYELLC 348 Query: 360 RIGTRY 365 +I R Sbjct: 349 QISERV 354 >gi|256262185|ref|ZP_05464717.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9] gi|263091881|gb|EEZ16203.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9] gi|326411074|gb|ADZ68138.1| Alr, alanine racemase [Brucella melitensis M28] gi|326554365|gb|ADZ89004.1| Alr, alanine racemase [Brucella melitensis M5-90] Length = 399 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + VN+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVEMIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|225686682|ref|YP_002734654.1| alanine racemase [Brucella melitensis ATCC 23457] gi|225642787|gb|ACO02700.1| alanine racemase [Brucella melitensis ATCC 23457] Length = 396 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 18 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 77 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 78 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + VN+ QL + L+ Sbjct: 138 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQLAKMTALL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 198 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 258 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRSLSN-------- 309 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 310 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVEMIGPHQRLEDVARDCD 366 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 367 TIPYEILTALGNRYARVY 384 >gi|315649168|ref|ZP_07902258.1| alanine racemase [Paenibacillus vortex V453] gi|315275387|gb|EFU38745.1| alanine racemase [Paenibacillus vortex V453] Length = 395 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 163/384 (42%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I+L L+ N++ AL + A VK NAYG G ++A L G V Sbjct: 6 RPTLAEINLDHLRANYNVFREALPKHMELLACVKANAYGHGAVEVARELQQLGAAYLSVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSH 122 ++E ++LR I VL P + ++ + I + SS + + Sbjct: 66 FLDEALELRQGGISIPILVLGYTPPEAVETAYEYDVTITLFSSEVLKAIKALPVKPEKPL 125 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++D+G RLGL ++AL F + + + + +H A AD+ + Q R Sbjct: 126 KVHIKIDSGMGRLGLLPGEDALTFIEEACSLPQVVVEGMFTHFARADEHNKDYTLEQYRR 185 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 F+ + + + +S+ + P + + R GISLYG K+ ++ Sbjct: 186 FQGVADALRDKGYHIPIIHTGNSAAAIDTPELSYNMVRIGISLYGLYPSDEVNRKAVSLR 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T + +++ ++ +SYG + ++ I IGYADG+ LSG Sbjct: 246 PVMTLKTKLVYVKNLPPHSGISYGSKYVTEQEERIGTLPIGYADGFSRMLSG-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDD 345 + I+G P++G I MD M + ++ I+ G+ + + G I D+ Sbjct: 298 ---KAEVLIRGRRAPVVGNICMDQCMVSLKPFAEEAEQIKAGEEVVLIGQQSGECITADE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ I R + Y Sbjct: 355 LAAKLGTIHYEVVCMIAHRVPRQY 378 >gi|332716082|ref|YP_004443548.1| Alanine racemase [Agrobacterium sp. H13-3] gi|325062767|gb|ADY66457.1| Alanine racemase [Agrobacterium sp. H13-3] Length = 388 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 206/365 (56%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ A++ ++TAAVVK +AYGLG + ++ L++AG ++FFV ++E Sbjct: 18 LTIDLGALRDNYLALAAMAPTSQTAAVVKADAYGLGADIVSQVLFDAGCRNFFVAHIDEA 77 Query: 69 VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 + LR + +ARIFVL G+ PG E + PV++S+ Q+ ++ G + P A+ Sbjct: 78 LALRLRLSAEARIFVLNGLQPGNEASCAAMAVTPVLNSLEQIAQWAAHAKNLGKTLPAAV 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG RLGLS +E ++ ++SHLACAD+P N+ QL R Sbjct: 138 QIDTGMCRLGLSPEELEVLASRPQLLDDIDVAFVMSHLACADEPDHLSNAAQLSVMRKAA 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + ++S GI LG +YH L RPGI+LYGG + + +PM+ VV + +I R Sbjct: 198 VAFPDVSVCFSNSGGIFLGNDYHNSLLRPGIALYGGAPSVTRPNPMKPVVRLDVAVIQTR 257 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG LV YGG + + +A A GYADG P +LS G + G Sbjct: 258 DVPAGSLVGYGGSFEAAGPTRLATIAAGYADGLPRSLSNR-----------GAAWYNGVR 306 Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI G+++MD + DI+ ++ G ++Q+ GPD L+D+A +GT Y++L +G R Sbjct: 307 LPIAGRVSMDSIILDISALPLGTLTQGSFVQMIGPDQTLEDIAEDAGTIAYEILTGLGRR 366 Query: 365 YAKFY 369 Y + Y Sbjct: 367 YRRNY 371 >gi|226310085|ref|YP_002769979.1| alanine racemase [Brevibacillus brevis NBRC 100599] gi|226093033|dbj|BAH41475.1| alanine racemase [Brevibacillus brevis NBRC 100599] Length = 400 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 152/380 (40%), Gaps = 29/380 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++DL A++ N + AVVK + YG G + +G V + Sbjct: 8 TWVEVDLDAIRANLETFKRHLPEKTDIMAVVKADGYGHGAVHVGKEALASGADSLAVALL 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +E + LR A I VL + + SV +T + ++ Sbjct: 68 DEALILRRAGITAPILVLGYTPVESIVTASELEVELTAYSVEWITEANDILQKNDHKPVG 127 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERF 182 ++ DTG RLG+ +E L + + + + I +H ACAD+P + Q + F Sbjct: 128 IHVKTDTGMGRLGVRTKEDLLAVVGALEECSKLKWTGIFTHFACADEPDTTHVRRQHDLF 187 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 ++ + + +++ + P++ + R GI LYG + ++T Sbjct: 188 QSFLQALREANKKLPTVHCCNTAAAIAFPDWGYDTIRLGIGLYGLYPSLYMKERADVILT 247 Query: 238 A----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + RI ++KA VSYG D IA IGYADGY LS Sbjct: 248 PALALKTRIAHVKKADEPFTVSYGATHTAQPDEWIATLPIGYADGYSRLLSNR------- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 G+ G PI G++ MD M + +S V D + ++G +I LD++A Sbjct: 301 ----GEVLYNGTRYPIAGRVCMDQIMVSL-NSTEAAVNDEVVLYGKQGDEEISLDEIADL 355 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT NY++ + R + Y Sbjct: 356 LGTINYEVPCMLNYRIPRLY 375 >gi|225026346|ref|ZP_03715538.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353] gi|224956356|gb|EEG37565.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353] Length = 390 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 27/375 (7%) Query: 10 KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL A++ N+ ++ +G NA T AV+K + YG G ++A L + F V +++EG Sbjct: 26 EIDLKAIRENYINIKKKTGDNAMTMAVIKADGYGHGAVEVAHYLNDI-ADYFGVATIDEG 84 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYALQ 127 V+LR + I +L P + + I + + + Sbjct: 85 VELRKAGLKQPILLLGYNSPSLYYKNLEYGVDQTIYCYDTAKAMSEAAVKAEKTARIHIA 144 Query: 128 VDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +DTG R+GLS E L ++ + +HL+CAD Q+ER+ + Sbjct: 145 LDTGMTRIGLSPDEKGLAIVKQIAELPNIKIEGLFTHLSCADMTDKAYTESQMERYDHFV 204 Query: 187 S--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238 GIE + +S+ I+ ++ + + R GI LYG ++ Sbjct: 205 QLLDEAGIEIPVKHICNSAAIMEYEDHRYDMARAGIILYGMYPSDEVDFSNLDLTPAMSW 264 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + ++ I + VSYG + +A ++GYADGY +LS G Sbjct: 265 YSHVVNIMEPEMERGVSYGATYIVEHPCRLATVSVGYADGYARSLSN-----------KG 313 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 I G PI+G++ MD M DITD +++ D + + G D I ++D+A +G+ N Sbjct: 314 WVLIHGQKAPIVGRVCMDQMMVDITDIPDVKLEDIVTLIGKDGDNYISVEDMANLAGSFN 373 Query: 355 YDLLVRIGTRYAKFY 369 Y+ + +G R + Y Sbjct: 374 YEFVCDVGKRVPRVY 388 >gi|54310410|ref|YP_131430.1| alanine racemase [Photobacterium profundum SS9] gi|123614432|sp|Q3V7I5|ALR_PHOPR RecName: Full=Alanine racemase gi|46914851|emb|CAG21628.1| putative alanine racemase, biosynthetic [Photobacterium profundum SS9] Length = 359 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 107/365 (29%), Positives = 171/365 (46%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ AL +N ++ + N++ AVVK N YG G +A +L + F V +EE + Sbjct: 8 INTDALTHNIRQLHLQAPNSKLLAVVKANGYGHGLLHVAKSLPD--ADAFGVARIEEALT 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + + TN I + + + L++DT Sbjct: 66 LRAGGVVKPILLLEGFYGASDLPVIVTNNIHTVVHSIEQLEALESAELDNQAVVWLKIDT 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++ D + + +SH CADD +S+V + Q+ F +L Sbjct: 126 GMHRLGVRPEQLDDVVQRLHACDNVAKPLRYMSHFGCADDLASNVTNQQINTFLSLTEGC 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTAEARIIL 244 +G E SLA+S+GIL P+ + RPGI +YG + MQ V+T + +I Sbjct: 186 RG-ERSLAASAGILAWPDSQLEWIRPGIIMYGVSPFTEPDRSAEAFNMQPVMTLTSSLIA 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R GE V YGG RD+ + V AIGY DGYP T G + G Sbjct: 245 VRDVKEGEQVGYGGIWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVLVNG 293 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +VP+ G+++MDM D+ + +VGD ++G + + VA GT Y+L+ ++ +R Sbjct: 294 RIVPMAGRVSMDMLTVDLGPNAQDKVGDEAILWGNGLPAEVVAEHIGTIAYELVTKLTSR 353 Query: 365 YAKFY 369 Y Sbjct: 354 VDMTY 358 >gi|291519681|emb|CBK74902.1| alanine racemase [Butyrivibrio fibrisolvens 16/4] Length = 389 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 161/381 (42%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++L A+ N+ + G N + VVK +AYG G ++A L G V+ Sbjct: 6 RRTWAEVNLDAIAYNYKKIKEKIGENTKFLGVVKADAYGHGSVQVAQLLEEIGADYLAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSH 122 S +E ++LR+ + I +L Q + + N+ + + ++ + CG + Sbjct: 66 SADEALELRVNGIKMPILILGHTPKEQVGRLIEYNITQAITCKAKADEYSAEAVKCGGTL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDP---SSHV 174 ++VDTG +RLG + N I +H A AD+ Sbjct: 126 KVHIKVDTGMSRLGYLCDNGYFDTGVDGIVEACNMPGLSAEGIFTHFAVADEFGDECDKY 185 Query: 175 NSVQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 Q E F +I K A++ + P + + RPG+ LYG + Sbjct: 186 TKHQFELFTGVIEAVEEKLGRKFAIRHCANTGAVARFPETYLDMVRPGLLLYG-YGEFAH 244 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ +T + + I+ AG +SYGG K + + I V GYADG+ +LS S Sbjct: 245 EMGLKPAMTMKTTVSTIKIYPAGTAISYGGIFKTEKTTRIGVLPYGYADGFLRSLSNKCS 304 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 ++ + GKI MDM M DITD S++VG ++IFG +D++A Sbjct: 305 LYTKEG-----------PAKLRGKICMDMCMIDITDMPSVDVGSEVEIFGEKNSIDELAE 353 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +GT Y+L + R + Y Sbjct: 354 LAGTIPYELTCAVSKRVPRVY 374 >gi|52425237|ref|YP_088374.1| alanine racemase [Mannheimia succiniciproducens MBEL55E] gi|81825540|sp|Q65TC1|ALR_MANSM RecName: Full=Alanine racemase gi|52307289|gb|AAU37789.1| Alr protein [Mannheimia succiniciproducens MBEL55E] Length = 357 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 174/363 (47%), Gaps = 15/363 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +KI ALK+N + + +++ AVVK NAYG G E ++ L N V F V Sbjct: 2 KPATVKISSVALKHNIQIIKQKAPHSKIIAVVKANAYGHGVEFVSSTLENL-VDGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + +R I +L G ++ I N I + K + Sbjct: 61 LAEALSVRSNGVTKPILLLEGFFSPKDLPILSVNNIQTVVHNQDQLDAIKRANLENPIKV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +RLG+SL+E + + N +SH + AD+ S ++QL RF Sbjct: 121 WLKIDTGMHRLGVSLEEVDYYYNELMNCPNVDEVGFVSHFSRADETDSDYTNIQLNRFLD 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARI 242 + KG ++A+S GIL + H + RPGI +YG + + + + V+T + + Sbjct: 181 ATKNKKG-NRTIAASGGILFWEDSHLEYIRPGIIMYGVSPINIPSSEYGLIPVMTLTSSL 239 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R GE V YGG RD+ I V AIGY DGYP V G +I Sbjct: 240 IAVRDHKKGEPVGYGGIWVSERDTKIGVVAIGYGDGYPRN-----------VPAGTPIYI 288 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI+G+++MDM D+ +VGD ++G ++ +++VA +G +Y+L+ ++ Sbjct: 289 NGRRVPIVGRVSMDMVTVDLGPDCKDKVGDEAVLWGKELPIEEVAEITGLLSYELMTKLT 348 Query: 363 TRY 365 R Sbjct: 349 PRV 351 >gi|52840976|ref|YP_094775.1| hypothetical protein lpg0739 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296765|ref|YP_123134.1| hypothetical protein lpp0804 [Legionella pneumophila str. Paris] gi|81822627|sp|Q5X709|ALR_LEGPA RecName: Full=Alanine racemase gi|81823455|sp|Q5ZXJ2|ALR_LEGPH RecName: Full=Alanine racemase gi|52628087|gb|AAU26828.1| alanine racemase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750550|emb|CAH11952.1| hypothetical protein lpp0804 [Legionella pneumophila str. Paris] Length = 357 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 172/366 (46%), Gaps = 17/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+ +AL +N + L+ + A+VK NAYG G ++AP L + ++ F V Sbjct: 2 SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + +R + + G+ E + N + Q + Sbjct: 61 CLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACVLHHAQQLEWLIKTPLPYPIK 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++V+TG +RLG + E + + +++HLACAD+P N Q+ F Sbjct: 121 VWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKSIGLMTHLACADEPHRPENQQQISLF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 + IS + S+A+S+ I+ P+ + RPGI LYG + N+ + V+ Sbjct: 181 QE-ISIPGFRQRSIANSAAIISFPDSQADVVRPGIMLYGVSPFANQNAHDLGLIPVMRFM 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I I + V YGG K + S I V A GY DGYP +S Sbjct: 240 SAISAIHDNPSFAQVGYGGTWKSDKPSRIGVVAAGYGDGYPRHIS-----------EKTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +++G V I+G+++MDM D+T+ IE+GD ++++G + ++ +A ++GT Y+LL Sbjct: 289 VWVRGREVSIVGRVSMDMLTIDLTEHPDIEIGDEVELWGTHVLVERIAKSAGTVGYELLC 348 Query: 360 RIGTRY 365 +I R Sbjct: 349 QISERV 354 >gi|23100681|ref|NP_694148.1| D-alanine racemase [Oceanobacillus iheyensis HTE831] gi|50897490|sp|Q8ELK1|ALR2_OCEIH RecName: Full=Alanine racemase 2 gi|22778915|dbj|BAC15182.1| D-alanine racemase [Oceanobacillus iheyensis HTE831] Length = 392 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 159/379 (41%), Gaps = 23/379 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S ++ L A+ +N + + + AVVK + YG G ++A AG Sbjct: 5 SYRDTWTEVSLDAIHHNVTAFKNHIDHHTKLMAVVKADGYGHGAVEVAQEALTAGADYLA 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 V ++E ++LR A + VL HP K + + + + Sbjct: 65 VAILDEAIQLRDAGIDAPLLVLGYTHPDGLKTAIEQQITLTVFTKEDAEQVKIAAELLQK 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + L++++G NR+G++ +E + + L +H A AD+ +Q Sbjct: 125 TARIHLKIESGMNRIGIATKEEAVEIAKALHSSFVMLEGAFTHFADADNTDPTYTEMQFH 184 Query: 181 RFRTLISH---YKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 RF +ISH + I +++ + P+ H + R GI +YG + + ++ Sbjct: 185 RFNQIISHLRTHCHIPIVHCCNTAATIAYPDMHLDMVRVGIGIYGLYPETHLKELIDLKQ 244 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ + + + I+ +SYG R S IA IGYADG+ LS Sbjct: 245 AMSLKTKPVYIKTVDQDTAISYGLTFTTERKSTIATMPIGYADGFSRLLSNR-------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G + PI+G+I MD +M D+TD ++ + D I IFG I +++VA Sbjct: 297 ---GDVIVHAGRAPIVGRICMDQSMIDVTDVENVGLDDVITIFGEPTEGYIAMEEVANLM 353 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+ IG R + Y Sbjct: 354 GTIHYETACLIGKRVPRIY 372 >gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13] gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13] Length = 821 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 151/369 (40%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N++ L + +VK YG G ++A L V +E Sbjct: 463 LEVNLDAIVHNFNQYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 G +LR I V+ + + V S + G++ +P + Sbjct: 523 GAELRKEGISIPIIVMNPEFSSFNVLFENHLEPEVYSFRLLDAMIRETERRGITSYPIHI 582 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + SHLA +D QL++F Sbjct: 583 KIDTGMHRLGFQPEDVPAICERLIAQSGVIARSVFSHLAGSDSYVFDDFTHQQLDKFTKA 642 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +S+GI Y + R GI LYG + K + T + Sbjct: 643 AGELESGLEYKVIKHILNSAGIERFAAYQMDMVRLGIGLYGVSASGQKGLRNVS--TLKT 700 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AG+ + Y + RDS IA+ IGYADG S GG+ Sbjct: 701 TILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSNG----------GGEV 750 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G PI+G I MD M D+TD+ + GD + IFG ++ + +++ T Y++L Sbjct: 751 LINGQRCPIIGNICMDACMIDVTDTH-AQEGDAVIIFGDELPVSELSDKLKTIPYEILTS 809 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 810 ISPRVKRVY 818 >gi|227891789|ref|ZP_04009594.1| alanine racemase [Lactobacillus salivarius ATCC 11741] gi|227866448|gb|EEJ73869.1| alanine racemase [Lactobacillus salivarius ATCC 11741] Length = 371 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 27/380 (7%) Query: 3 SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R I L A+K+N ++ L AVVK NAYG G +A A AG F Sbjct: 5 RHRNTRAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV- 120 V ++EG+ LR + I +L + + +L + ++ LT KL+ Sbjct: 65 VAIIDEGIALRESGIKDPILILGVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQ 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQ 178 S L +DTG R+G E L + K QL +H + AD Q Sbjct: 125 SLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQLKCEGVFTHFSTADSKDPAYFEKQ 184 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ++F L+ K + +S+ L PN+ L R GIS+YG I+++ ++ Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETWNLE 244 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ E+ ++ +++ AG + YG ++ I IGYADG+ + G Sbjct: 245 PALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 K I G I+G++ MD M + + G + + G + I DVA Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDVANY 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T +Y+++ I R + Y Sbjct: 351 ADTIHYEIMCNITERVPRIY 370 >gi|301301060|ref|ZP_07207220.1| alanine racemase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851330|gb|EFK79054.1| alanine racemase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 371 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 27/380 (7%) Query: 3 SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R I L A+K+N ++ L AVVK NAYG G +A A AG F Sbjct: 5 RHRNTRAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV- 120 V ++EG+ LR + I +L + + +L + ++ LT KL+ Sbjct: 65 VAIIDEGIALRESGIKDPILILGVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQ 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178 S L +DTG R+G E L + K QL I +H + AD Q Sbjct: 125 SLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQLKCEGIFTHFSTADSKDPAYFEKQ 184 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ++F L+ K + +S+ L PN+ L R GIS+YG I+++ ++ Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETWNLE 244 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ E+ ++ +++ G + YG ++ I IGYADG+ + G Sbjct: 245 PALSLESELVAVKEVEVGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 K I G I+G++ MD M + + G + + G + I DVA Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDVANY 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T +Y+++ I R + Y Sbjct: 351 ADTIHYEIMCNITERVPRIY 370 >gi|160895303|ref|ZP_02076074.1| hypothetical protein CLOL250_02862 [Clostridium sp. L2-50] gi|156862996|gb|EDO56427.1| hypothetical protein CLOL250_02862 [Clostridium sp. L2-50] Length = 388 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 169/384 (44%), Gaps = 27/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ + I+L ++ N M A + + AV+K +AYG G +++ AL + Sbjct: 1 MNKYRRIEADINLDNIRENIKMMKACVPESMKMLAVIKADAYGHGAVEVSRALSDL-ADF 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 + + ++E V+LR + + +L P + + ++ P + + S Sbjct: 60 YAIACIDEAVELRHAGCEKPLLILGYTDPSEYDELITYDVRPAMYDKAECAILSDDAVKK 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G +++DTG +R+G +A ++ + ++ I +H + AD+ + Sbjct: 120 GTKAKIHIKMDTGMSRIGFQCDDAGINDIVEIAHMPGIEVEGIFTHYSKADEYDKTAANG 179 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 QL FR++I + +++S+GI+ N F + R GI YG H + Sbjct: 180 QLALFRSVIGRLEERGISIPVKHISNSAGIMEMDNEGFDMVRSGIVTYGLYPSDEVDHSI 239 Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + A+++ ++ AG + YG D IA + GYADGYP S + Sbjct: 240 AALKPAMELLAKVVHVKDVKAGTGIGYGWTFVAPHDMRIATVSAGYADGYPRAQSNI--- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 G+ I G PI G++ MD M D++D VGD + + G +I +++ Sbjct: 297 --------GRVIIHGKYAPITGRVCMDQFMIDVSDIPETAVGDTVVLIGKCGDKEITVEE 348 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA + + NY+L+ IG R + Y Sbjct: 349 VAEPANSFNYELICNIGRRVPRVY 372 >gi|149377612|ref|ZP_01895350.1| alanine racemase [Marinobacter algicola DG893] gi|149358085|gb|EDM46569.1| alanine racemase [Marinobacter algicola DG893] Length = 366 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 168/372 (45%), Gaps = 23/372 (6%) Query: 6 FLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 R +ID AL++N+ L+ AR AV+K + YG G ++A AL + F V Sbjct: 1 MPRKTVARIDTRALRHNYRLACRLASPARAMAVIKADGYGHGIREVARAL-ASDAPKFAV 59 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 +EE + +R + +L G+H G V+ S QL + + Sbjct: 60 ACLEEALAIREAGVDHPVVLLQGMHSAGDVATCVCEGFEVVVHSGYQLDWLDQ---ADER 116 Query: 122 HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++V+TG NRLG + A ++ ++H ACADD S Q Sbjct: 117 PTVWVKVNTGMNRLGFAPSVLADVMARLDTIGAGETVAGFVTHFACADDISRDDTDQQTR 176 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 F + + +E S ++S+ L F TRPGI LYG + + K+ P + V+T Sbjct: 177 VFSEAVVDWPKLEKSASNSAAHFLPAQPSFDWTRPGIMLYGASPTLGKTGPELGLEAVMT 236 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 EA + +R GE V YG +++ + + AIGY DGYP Sbjct: 237 LEAPLTAVRTLKPGESVGYGYSWTAIQETRMGIVAIGYGDGYPRHAG-----------TD 285 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 ++ G + ++G+++MDM D+T + GD ++++G ++ +D+VA +GT Y+L Sbjct: 286 TPAWVGGNRIRLIGRVSMDMLAVDLTGAPEACPGDLVELWGRNVSVDEVAQHAGTIGYEL 345 Query: 358 LVRIGTRYAKFY 369 L I R + Y Sbjct: 346 LTGITARVPRLY 357 >gi|238922140|ref|YP_002935654.1| alanine racemase [Eubacterium eligens ATCC 27750] gi|238873812|gb|ACR73520.1| alanine racemase [Eubacterium eligens ATCC 27750] Length = 389 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +ID+ AL +N+ ++ G N + VVK +AYG G +++ L +G V+ Sbjct: 6 RRTWAEIDMDALAHNYETLRKRIGENVKFLGVVKADAYGHGSVQVSRLLQESGADYLAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSH 122 S++E V+LR + +L + + N+ V L + + + CG + Sbjct: 66 SIDEAVELRHNGITMPVLILGHTPKEEVSELIKNNITQAVTCRAKALEYSEEAVKCGGTL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDP---SSHV 174 ++VDTG +RLG I +H A +D+ Sbjct: 126 KIHIKVDTGMSRLGYLCDGDYFESGVEGICEGCTLPGLDAEGIFTHFAVSDEFGEEYESY 185 Query: 175 NSVQLERFRTLISHYKGI------EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 Q E F ++I + A++ + P + RPG+ LYG D + Sbjct: 186 TKHQFELFTSVIDEVEKKLGKKFKIRHCANTGAVARYPETWLDMVRPGLLLYGYGDF-AQ 244 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V++ + + I+ AG +SYGG K R + + V GYADGY LS Sbjct: 245 ELGLKPVMSLKTTVSTIKTYPAGTAISYGGIYKTDRKTRMGVVPYGYADGYFRCLSNRYE 304 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 + P GKI MDM M D+TD ++++VG ++IFG ++ +A Sbjct: 305 LMTEEG-----------PAPQRGKICMDMCMIDLTDKMNVDVGSEVEIFGKANPIEHMAQ 353 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +GT Y+L + R + Y Sbjct: 354 LAGTIPYELTCAVSKRVPRMY 374 >gi|20137250|sp|Q9S5V6|ALR_BACPS RecName: Full=Alanine racemase gi|4586399|dbj|BAA76373.1| alanine racemase [Bacillus psychrosaccharolyticus] Length = 383 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 160/384 (41%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +I+L A+ N +M L AVVK NAYG G ++A AG Sbjct: 1 MTLQNFYRDTWAEINLDAIFENAANMKKHLPPEITLFAVVKANAYGHGDVEVAETAIQAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P +I ++ + L + Sbjct: 61 AGYLAVAFLDEALALRKKGITAPILVLGASRPEDAQIAARESITLTVFQAGWLEAAQSFL 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-SLIISHLACADDPSSHVN 175 G L+ D+G R+G+ QE ++ K + I +H A AD + Sbjct: 121 E-GTVLTIHLKCDSGMGRIGIRKQEEMNEIERFLQKTKCFVLEGIFTHFATADQLDTEYF 179 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----S 229 S QL RF +++ K + +S+ +L PN F R GISLYG + + Sbjct: 180 SKQLARFEEMLTWLKEKPKYVHAANSAALLRFPNAVFNSVRMGISLYGLSPSMEMKEVLP 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + + +++ ++ G+ VSYG D+ I IGYADG+ L G Sbjct: 240 FALRPAFSLKTKLVHVKNISKGQSVSYGATYTAEEDTWIGTLPIGYADGWIRMLQGQ--- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 + ++G P++G+I MD M ++ + G + + G + I +DD Sbjct: 297 ---------EVLLEGGRSPLVGRICMDQCMVKLSREFPV--GTEVTLIGKNGTECITVDD 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + Y Sbjct: 346 IAEKLNTINYEVTCMISSRVPRMY 369 >gi|260424611|ref|ZP_05732650.2| alanine racemase [Dialister invisus DSM 15470] gi|260402530|gb|EEW96077.1| alanine racemase [Dialister invisus DSM 15470] Length = 361 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 155/371 (41%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++IDL A ++N + + N AV+K NAYG G + A G V VEEG Sbjct: 1 MEIDLRAFRHNLRVIRSHLKNVPALAVIKANAYGHGAVECLRAALEEGCVGAAVARVEEG 60 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL-Q 127 +R ++VL P + + + LI + L S + Sbjct: 61 RVVRASGFDCPVYVLGLPLPEEMSVGVNEELILPVDDTTNLEALEIAASTLKKMVEVMLP 120 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NR+G ++ F + + +HLA AD + QL F +S Sbjct: 121 IDTGMNRIGTHAKDLSAFLEKLKRYPHLHIHGLFTHLATADAKNKSKTYKQLAEFEEALS 180 Query: 188 HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVVTAEARI 242 +E + S++ + P + L RPGI YG + ++ ++T + I Sbjct: 181 AMPSLENLVISAASSAGVVDIPESWYNLVRPGIIQYGPSPSNTMLNYLDLKYMMTVVSHI 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 ++ GE V YG +D IA IGYADGYP LS G I Sbjct: 241 THVQVVHKGETVGYGATYTAGKDMRIATIPIGYADGYPRALSN-----------KGAVLI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358 PI+G+I MD M + D ++ GD + + G +IK+D++A +GT +Y++L Sbjct: 290 GEKRCPIVGRICMDQLMAAVDD--TVMPGDEVVLIGKQGDEEIKVDELAELAGTIHYEIL 347 Query: 359 VRIGTRYAKFY 369 + R + + Sbjct: 348 CGL-RRIPRIF 357 >gi|311071135|ref|YP_003976058.1| alanine racemase [Bacillus atrophaeus 1942] gi|310871652|gb|ADP35127.1| alanine racemase [Bacillus atrophaeus 1942] Length = 389 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 161/384 (41%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAG 56 M+ F R +I+L+A++ N +M G+ AVVK NAYG G ++A A +AG Sbjct: 1 MNIKPFYRDTWAEINLSAIEENVSNMKKHIGDRVELMAVVKANAYGHGDAEVAEAALSAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL + P +I + ++ SV + ++ + Sbjct: 61 ASCLAVAILDEAISLRKRGLAAPILVLGAVPPEYVEIAAEYDVTLTGYSVEWIQEAARHI 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVN 175 + L+VDTG NRLG+ +E + + +H A AD+ Sbjct: 121 -KETPVHFHLKVDTGMNRLGVKTEEEVQNVMKILERNPGLLCKGVFTHFATADEKDRSYF 179 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKS 229 +Q ERF+ LI+ +K + A+S+ L F R G+ +YG Sbjct: 180 LMQFERFKELIAPLPWKQLMVHCANSAAGLRLKKGFFNAVRFGVGMYGLRPSAEITNEIP 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + T + + ++K GE VSYG +D I +GYADG+ L Sbjct: 240 FRLHQAFTLNSTLTHVKKIHKGESVSYGATYTAEKDQWIGTVPVGYADGWLRKLQ----- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G + I G + I G+I MD M ++ G + + G I +D+ Sbjct: 295 -------GTEVLINGKRLKIAGRICMDQFMVELDKEYP--PGSRVTLIGRQKDDCITVDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + + Sbjct: 346 IASRLETINYEVTCTISSRVPRMF 369 >gi|156932325|ref|YP_001436241.1| alanine racemase [Cronobacter sakazakii ATCC BAA-894] gi|156530579|gb|ABU75405.1| hypothetical protein ESA_00100 [Cronobacter sakazakii ATCC BAA-894] Length = 359 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + ++ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVVNRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + Sbjct: 62 EALRLREGGITQPILLLEGFFNAADLPAIAAQRFHTAVHSEEQLAALEQATLSEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + A F + K + Q ++SH A AD+P QL+ F + Sbjct: 122 KLDTGMHRLGVRPEAAQAFYDRLAACKNVRQPVNVVSHFARADEPDCGATERQLDIFNSF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GIL P HF RPGI LYG + Q ++ + Sbjct: 182 THDKPG-KRSIAASGGILFWPQSHFDWVRPGIILYGLSPLDTHPWGAELGFQPAMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPR-----------CAPTGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + + GD + ++G + ++ +A A+G + Y+L+ R+ Sbjct: 290 VNGREVPIVGRVAMDMICVDLGPDAAEKAGDTVIMWGEALPVERIAEATGVSAYELVTRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMRY 357 >gi|307609535|emb|CBW99033.1| hypothetical protein LPW_08181 [Legionella pneumophila 130b] Length = 357 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 173/366 (47%), Gaps = 17/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+ +AL +N + L+ + A+VK NAYG G ++AP L + ++ F V Sbjct: 2 SRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVREVAPVL-DGRIEAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + +R + + G+ E + N I Q + Sbjct: 61 CLEEALAIRALGVETSCILFQGVFSSDELSVAVENDFACILHHAQQLEWLIKTPLPYPIK 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++V+TG +RLG + E + + +++HLACAD+P N Q+ F Sbjct: 121 IWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIGLMTHLACADEPHRPENQQQISLF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 + IS + S+A+S+ I+ P+ H + RPGI LYG + N+ + V+ Sbjct: 181 QE-ISIPGFRQRSIANSAAIISFPDSHADVVRPGIMLYGVSPFANQNARDLSLIPVMRFM 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I I + V YGG K + S I + A GY DGYP +S Sbjct: 240 SAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYGDGYPRHIS-----------EKTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +++G V I+G+++MDM D+T+ +E+GD ++++G + ++ +A ++GT Y+LL Sbjct: 289 VWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVERIAKSAGTVGYELLC 348 Query: 360 RIGTRY 365 +I R Sbjct: 349 QISERV 354 >gi|166713563|ref|ZP_02244770.1| alanine racemase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 366 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 162/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ L G ++ AVVK +AYG G + A AL F V Sbjct: 2 RPAHASIDLEALRHNYRLAKRL-GGSKALAVVKADAYGHGAVRCAQALEPE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I +L G E + + + +++ PQ Sbjct: 60 IEEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGLS ++ ++++HLA AD+ Q F Sbjct: 120 WLKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDQQAVAF-A 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEAR 241 L + E SL +S G+L P +RPG+ LYG + + V+T +R Sbjct: 179 LSAGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQDTENTAQLRPVMTLRSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R GE V YG + R + + V A+GYADGYP G Sbjct: 239 IISVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + P++G+++MDM D+TD +G +Q++G ++ +A + Y LL + Sbjct: 288 VDGQVCPLIGRVSMDMLTVDLTDHPQAAMGATVQLWGQAPRVGPLATQCNVSAYQLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRVPRTY 354 >gi|92114747|ref|YP_574675.1| alanine racemase [Chromohalobacter salexigens DSM 3043] gi|122419409|sp|Q1QU82|ALR_CHRSD RecName: Full=Alanine racemase gi|91797837|gb|ABE59976.1| alanine racemase [Chromohalobacter salexigens DSM 3043] Length = 364 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 153/370 (41%), Gaps = 17/370 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L IDL AL+ N+ + ++R AVVK +AYG G A AL + F V Sbjct: 2 SRPLIADIDLDALRRNYCLARDQAPHSRAIAVVKADAYGHGAVACADALRDL-APAFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR I +L G E + D + + P Sbjct: 61 CLEEALTLREAGITQPIVLLEGFFDAAELSLIDAHRLWTAVHSDWQIDALLAYRPRQPIP 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182 L++D+G +RLG + + +++H A AD + Q+ Sbjct: 121 TWLKLDSGMHRLGFAPEAFEARWQRLAAATEHVTDLHLMTHFATADALDAAYFRRQMACI 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 + LA+S L P H RPG+ LYG + S ++ V+T Sbjct: 181 -ASLRQRLEAPVCLANSPATLAWPEAHGDWNRPGVMLYGSDPLEGANDASRALEPVMTLR 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +R+ GE V YGG+ + +R S I V A GY DGY G Sbjct: 240 SEIIAVRELAEGEAVGYGGRWRASRPSRIGVVAGGYGDGYDRHA-----------RDGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G VP+ GK++MDM D+T+ +G + ++G + +D+VA T +Y L+ Sbjct: 289 VLVEGQRVPLAGKVSMDMLTVDLTELPEAGIGSPVVLWGEGLPIDEVARHCDTISYTLMT 348 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 349 GVLPRVPRRY 358 >gi|329928943|ref|ZP_08282753.1| alanine racemase [Paenibacillus sp. HGF5] gi|328937195|gb|EGG33622.1| alanine racemase [Paenibacillus sp. HGF5] Length = 395 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 168/384 (43%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I+L L+ N+++ AL + + A VK NAYG G ++A L G V Sbjct: 6 RPTLAEINLDHLRANYNAFREALPDHMKLLACVKANAYGHGAVEVARELQQLGAAYLSVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSH 122 ++E ++LR I VL P +I ++ + I + SS + + Sbjct: 66 FLDEALELRQGGISVPILVLGYTPPEAVEIAYEYDVTITLFSSEVLQAIKALPVKPEKPL 125 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++D+G RLGL ++A+ F +F+ + + +H A AD+ + Q R Sbjct: 126 KVHIKIDSGMGRLGLLPGEDAISFIEEAFSLPQVVVEGMFTHFARADEENKDYTLGQYRR 185 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 F+ + + + + +S+ + P + + R GI LYG K+ ++ Sbjct: 186 FQGVADALRDKDYHIPIIHTGNSAAAIDTPELSYNMVRVGIGLYGLYPSDEVNRKTVSLR 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T + +++ ++ +SYG + ++ I IGYADG+ LSG Sbjct: 246 PVMTLKTKLVYVKNLPPHSGISYGTKYVTEQEERIGTLPIGYADGFSRMLSG-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDD 345 + I+G VP++G I MD M + ++ I+ G+ + + G I D+ Sbjct: 298 ---KAEVLIRGRRVPVVGNICMDQCMVSLKSFAEEAEQIKAGEEVVLIGQQSGECITADE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ I R + Y Sbjct: 355 LAAKLGTIHYEVVCMIAHRVPRLY 378 >gi|268589444|ref|ZP_06123665.1| alanine racemase [Providencia rettgeri DSM 1131] gi|291315109|gb|EFE55562.1| alanine racemase [Providencia rettgeri DSM 1131] Length = 359 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 161/367 (43%), Gaps = 23/367 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L L++N + GN++ +V+K + YG G ++I PAL F V Sbjct: 3 RPISAVIHLQNLQHNLAIVRQHVGNSKIWSVMKADGYGHGIKQIWPALKE--TDGFGVLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E + LR + I +L G Q+ + D + F + Sbjct: 61 FDEAILLRKEGWKGPILLLEGFFQPQDLQLIDQYNLTTSVHSEWQLFAIENAQLSSPISV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183 +++++G NRLG S E + ++SH A +D + Q+++F Sbjct: 121 YIKLNSGMNRLGFSPSEYESVVQRLSKMLNVRSLTLMSHFANSDTKTGVTEPFQQIQQFE 180 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAE 239 L +E +A+S L + + R GI LYG + + ++ +T + Sbjct: 181 HLS-----LETCIANSGATLWHKHTQYDWIRTGILLYGASPSGKSTDISGLGLKAAMTLQ 235 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I + AG+ + YG + T+ IA A GYADGYP + Sbjct: 236 SEVIAIHEIPAGQSIGYGSRFTSTKPMRIATVACGYADGYPRHAANR-----------TP 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + KG +LG ++MDM DI+D +++G+ ++++G ++ +D+VA A+GT Y+LL Sbjct: 285 VWCKGKRCALLGAVSMDMLTIDISDCGDVKLGERVELWGQNLPVDEVAQAAGTIGYELLC 344 Query: 360 RIGTRYA 366 + R Sbjct: 345 ALAKRVP 351 >gi|160944933|ref|ZP_02092160.1| hypothetical protein FAEPRAM212_02449 [Faecalibacterium prausnitzii M21/2] gi|158444117|gb|EDP21121.1| hypothetical protein FAEPRAM212_02449 [Faecalibacterium prausnitzii M21/2] Length = 400 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 157/394 (39%), Gaps = 35/394 (8%) Query: 1 MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M F + +IDL AL+ N+ + A +G AVVK ++YG G + A G Sbjct: 1 MQKQPFEKHVWAEIDLEALRYNFREVKARAGALPLCAVVKADSYGHGAVQCARVFAEEGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 V+ + E V+LR I +L + P + ++ S+ Q S+ Sbjct: 61 AWLAVSCLTEAVQLRKAGQTLPILILGHVQPAYAAALIQNDITVACYSLAQAHALSEAAV 120 Query: 117 SCGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 + G L+ DTG R+G A+ + +++ + H + ADD + Sbjct: 121 AAGGRVHIHLKADTGMGRIGFALRTDFDAAIREMLEACALPGLEMTGLFQHFSVADDTAP 180 Query: 173 H---VNSVQLERF-----RTLISHYKGIEASLASSSGILLGPNYH------FQLTRPGIS 218 + Q F + + +S+G++L P++ + RPGI Sbjct: 181 ENVAYTAEQHALFVKAFHALKAAGREPALVHCDNSAGVMLHPDWPEGLPRERCMARPGII 240 Query: 219 LYGGTDKINKSHPMQTV-VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 LYG +T + + +I++ G+ SYG + + + +A GYAD Sbjct: 241 LYGYDPSDEVRFGRFKPVMTLKTVVSMIKEMQPGQCASYGRRFTAEKPTKVATLCTGYAD 300 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP LS G I G P+LG++ MD M D+TD + D ++ Sbjct: 301 GYPRLLS----------CGKGVVEIHGKACPVLGRVCMDQMMVDVTDVPEVREDDEAILW 350 Query: 338 GPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369 G + + +A + T Y++L + R + Y Sbjct: 351 GGTVSDTAETIARKTDTIPYEVLCGVSRRVPRVY 384 >gi|116748009|ref|YP_844696.1| alanine racemase [Syntrophobacter fumaroxidans MPOB] gi|189027394|sp|A0LFQ9|ALR_SYNFM RecName: Full=Alanine racemase gi|116697073|gb|ABK16261.1| alanine racemase [Syntrophobacter fumaroxidans MPOB] Length = 375 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 167/368 (45%), Gaps = 23/368 (6%) Query: 8 RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++IDL AL++N+ L+ +R VVK +AYG G +A L G V+ Sbjct: 5 WVEIDLAALRHNYSRAKERLAPGSRILGVVKSDAYGHGMIPVARELVACGASFLAVSKHW 64 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E V LR + I L G+ P + + PVI + S + Sbjct: 65 EAVDLRAAGIRLPILCLLGVEPSEMAEAIRNEIRPVIYRIDHARRLSDTARSLNATATVH 124 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG RLG+ + F + +L ++SH A AD+ +++QL RFR Sbjct: 125 VKLDTGMGRLGIPCRHLEAFLNELLTLPAIRLEGVLSHFASADEADKTSSTLQLTRFREA 184 Query: 186 I----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAE 239 + + + +A+S+G+L P HF L RPGI LYG + P + V+T + Sbjct: 185 MALLSARGLSVLGHIANSAGLLDLPQAHFDLARPGIMLYGSPPSLELHKPADLRPVMTFK 244 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++II ++ AG+ + YGG IA +GY DGYP LS G+ Sbjct: 245 SKIIQLKDVQAGQPIGYGGTFVTAAPGRIATIPVGYDDGYPRLLSNR-----------GR 293 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 ++G P++G+++M+M D+T S D + + G + +++A GT +Y Sbjct: 294 VLVRGMSAPVVGRVSMNMITADVTHIPSAREDDEVVLLGAQGTERVTAEEIAQLCGTISY 353 Query: 356 DLLVRIGT 363 ++ IG Sbjct: 354 EIYCSIGR 361 >gi|323490569|ref|ZP_08095775.1| alanine racemase [Planococcus donghaensis MPA1U2] gi|323395835|gb|EGA88675.1| alanine racemase [Planococcus donghaensis MPA1U2] Length = 385 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 167/381 (43%), Gaps = 27/381 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N + IDLTA+K+N SG+A AVVK +AYG G ++ + GV+ Sbjct: 1 MVENYRPTKAVIDLTAIKSNLTYFQEKSGDAEVIAVVKADAYGHGVLEVVKTVVAHGVRM 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + +E + LR + VL I N+I S+ L+ ++ + Sbjct: 61 LAVATPDEALFLRNQGIDTELLVLGATSSQFIPIAQQHNIIVTAISLDWLSMAARHIEQN 120 Query: 120 V-SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VDTG R+G+ + E + I +H A AD+ S + S Q Sbjct: 121 SDPLKIHLKVDTGMRRIGVQVDEVEE-AFGFIADHDFDFKGIFTHFATADEKDSPLFSQQ 179 Query: 179 LERFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPM 232 + T++ ++ +++S+ ++ P+ R GISLYG + + Sbjct: 180 VNAMNTILDKLDDPSVKVHISNSAAAIMHPDLACDAVRIGISLYGIAPSPYVGEEMNFDL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E +I ++K AGE +SYG + +D IA IGYADG L G D Sbjct: 240 QPALSLETEMIHVKKLKAGETLSYGATYRAEKDEWIATIPIGYADGMLRGLQGQD----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 +KG VPI+G+I MD M +++ S +G+ +Q+ G I +D+ A Sbjct: 295 -------VLVKGQRVPIIGRICMDQCMIRLSEKSS--IGEKVQLIGRQGNQQILIDEWAA 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y++ + R + Y Sbjct: 346 KLDTIPYEIPCILTKRVPRVY 366 >gi|256380541|ref|YP_003104201.1| alanine racemase [Actinosynnema mirum DSM 43827] gi|255924844|gb|ACU40355.1| alanine racemase [Actinosynnema mirum DSM 43827] Length = 388 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 160/375 (42%), Gaps = 25/375 (6%) Query: 7 LRLK--IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R + IDL L++N + A + A AVVK + YG G ++A +G S Sbjct: 26 PRAEVVIDLDNLRHNTAYLAARAPGAELMAVVKADGYGHGAVEVARTALGSGATWLGSCS 85 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHP 123 + E + LR A + + +S+ L + G Sbjct: 86 IPEALALRAGGITAPVLAWLDTPDTDFAPAIAEGVDLGLSTPRALESAAAAARRAGRRAR 145 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182 L++DTG +R G E F + ++ I SHLACAD+P Q ERF Sbjct: 146 VHLKIDTGLSRNGCPADEWEAFVELAAATPEVEVHAIWSHLACADEPGHPATDAQAERFD 205 Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 R + + LA+S+ +L P+ HF L RPGI+LYG ++ H ++ V+T Sbjct: 206 DAYRAALRAGLDPKRHLANSAALLTRPDLHFDLVRPGIALYGLNPVPDE-HDLRPVMTFR 264 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + ++ ++ AGE VSYG D+ +A+ +GYADG P LS Sbjct: 265 SSVVRTKRIRAGESVSYGLTWTAKSDTSLALVPVGYADGVPRALSNRM-----------H 313 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355 + G P++G++ MD + D D I GD + +FG + A +GT +Y Sbjct: 314 VRLAGRRRPVVGRVCMDQVVVDCGDD-EIAEGDEVVLFGTGVDGGPTAREWADTTGTIDY 372 Query: 356 DLLVRI-GTRYAKFY 369 +++ + R + Y Sbjct: 373 EIVTGMHRPRVVRTY 387 >gi|325578240|ref|ZP_08148375.1| alanine racemase [Haemophilus parainfluenzae ATCC 33392] gi|325159976|gb|EGC72105.1| alanine racemase [Haemophilus parainfluenzae ATCC 33392] Length = 360 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 171/364 (46%), Gaps = 16/364 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + KI ALK+N + + +++ AVVK NAYG G ++ AL + V F V Sbjct: 4 KPATAKISSLALKHNLQVIKEKAPHSKIIAVVKANAYGHGVVFVSSALESM-VDCFAVAR 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR I +L G ++ I N I + + K + Sbjct: 63 LEEALSLRSNGIIKPILLLEGFFDEKDLPIIAVNNIETVVHNREQLEALKRAAVPSPIKV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +RLG+SL E F ++ +SH + AD+ S VQL+RF Sbjct: 123 WLKIDTGMHRLGVSLDEVDYFYQELKKLPQIQPHLGFVSHFSRADELDSDYTQVQLDRFL 182 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEAR 241 G E ++A+S GIL P H RPGI +YG + + + V+ + Sbjct: 183 QATKDKGG-ERTIAASGGILFWPEAHLDCIRPGIIMYGISPTDTVGAEFGLTPVMNLTSS 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ +R+ GE V YGG +D+ I V AIGY DGYP V G + Sbjct: 242 LLAVREHKKGEPVGYGGIWTSPKDTKIGVVAIGYGDGYPR-----------DVPEGTPVY 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +VP +G+++MDM D+ +VGD + ++G ++ ++ VA SG +Y+L+ ++ Sbjct: 291 LNGRIVPSVGRVSMDMLTVDLGADSQDKVGDEVILWGKELPIETVAKYSGILSYELITKL 350 Query: 362 GTRY 365 R Sbjct: 351 TPRV 354 >gi|238061049|ref|ZP_04605758.1| alanine racemase [Micromonospora sp. ATCC 39149] gi|237882860|gb|EEP71688.1| alanine racemase [Micromonospora sp. ATCC 39149] Length = 372 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 99/375 (26%), Positives = 159/375 (42%), Gaps = 27/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +++DL A++ N + A + +A AVVK + YG G A A +AG V +++E Sbjct: 6 VRVDLDAIRENVTRLRAGT-SAELMAVVKGDGYGHGMLPSARAALDAGADWLGVCTLDEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 + LR A + + +S+ Q G L+ Sbjct: 65 LALRRAGIDAPVLAWLLAPGLPLHEGVAVGVDLAAASLTQLAEMVEASQLAGRPARLHLK 124 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +DTG R G ++ + + + L ++ + SH AD P QL F Sbjct: 125 IDTGLARGGATVADWPALLEAAAKAQADGLIEVVGVWSHFVYADLPGHPTTDRQLAIFHE 184 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + LA+S+ L P+ HF L RPGI++YG + + ++ +TA Sbjct: 185 GLDMVERAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAIYGLSPVAGERFGLRPAMTAR 244 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 AR++L ++ AG VSYG D+ +AV +GYADG P S G Sbjct: 245 ARVMLTKRVPAGSGVSYGHTYLTEADANLAVVPLGYADGVPRHASNT-----------GP 293 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355 + G + G++ MD + D D + GD +FGP + DD A A GT NY Sbjct: 294 VQLAGRRRTVSGRVCMDQFVIDCGDDP-VAAGDVATLFGPGTGGEPTADDWAEAVGTINY 352 Query: 356 DLLVRIGT-RYAKFY 369 +++ R G R + Y Sbjct: 353 EIVTRFGGVRVPRVY 367 >gi|162148204|ref|YP_001602665.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl 5] gi|209542849|ref|YP_002275078.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5] gi|161786781|emb|CAP56364.1| putative alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl 5] gi|209530526|gb|ACI50463.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5] Length = 383 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 137/372 (36%), Positives = 199/372 (53%), Gaps = 15/372 (4%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H+ L IDL A++ N+ ++ L+ A AAVVK +AYGLG ++APAL G + FF Sbjct: 13 HARAGATLTIDLDAIRANYRTVRNLAAGAECAAVVKADAYGLGAARVAPALQEEGARTFF 72 Query: 62 VTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CG 119 V ++EG+ LR + + ARI VL+G PG EK +LIPV++SV Q+ + L G Sbjct: 73 VAHLDEGMALRRHVSADARIIVLHGAVPGAEKDCLHDDLIPVLNSVDQIQRWRGLAHEAG 132 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + P LQ+DTG +R GLS E + + L L+ISHLACADDP ++ Q Sbjct: 133 RALPSILQLDTGMSRFGLSENEIRAIVADPDGLRGIDLRLVISHLACADDPDDPASTRQR 192 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 R + + SLA+SSG+ LG ++HF L RPG +LYG +PM+ VV + Sbjct: 193 ARLVRMRALLPPAPVSLAASSGVFLGRDFHFDLVRPGAALYGVAPNAATPNPMRPVVRLQ 252 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ARI+ R + V YG + + IA A GYADG+ + G Sbjct: 253 ARILQTRHVSPNDGVGYGLTYRPSAMRRIATIATGYADGFMRS-----------GAARGC 301 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 ++ +P+LG+I+MD D+TD+ G + + GP +DDVA A+GT Y++ Sbjct: 302 AWLGDMQLPVLGRISMDSMTVDVTDAPETLTRPGTMVDLLGPRRGVDDVARAAGTIGYEI 361 Query: 358 LVRIGTRYAKFY 369 L +G RY + Y Sbjct: 362 LTSLGHRYHRAY 373 >gi|108798118|ref|YP_638315.1| alanine racemase [Mycobacterium sp. MCS] gi|119867214|ref|YP_937166.1| alanine racemase [Mycobacterium sp. KMS] gi|126433776|ref|YP_001069467.1| alanine racemase [Mycobacterium sp. JLS] gi|108768537|gb|ABG07259.1| alanine racemase [Mycobacterium sp. MCS] gi|119693303|gb|ABL90376.1| alanine racemase [Mycobacterium sp. KMS] gi|126233576|gb|ABN96976.1| alanine racemase [Mycobacterium sp. JLS] Length = 383 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 160/378 (42%), Gaps = 26/378 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++ +DL A+ +N + +G+A+ V+K + YG G ++A + +AGV + V +V Sbjct: 12 AQVVVDLDAISHNVALLRDRAGSAQVMPVLKADGYGHGATEVAKVVLDAGVTELGVATVG 71 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR A + ++ +SSV Q + G++ Sbjct: 72 EALALRADGITAPVLAWLHGPGTDFAPAVQADIQLAVSSVRQLGEILDAVHRTGMTATLT 131 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERF 182 ++ DTG +R G+S E + I+SHLAC D+P + N Q +R Sbjct: 132 VKADTGLSRNGVSPAEYPALLQRLAKAQAEDAVRVRGIMSHLACGDEPDNPTNDRQAQRL 191 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 + A L +S + P+ F + RPGI++YG T ++ + Sbjct: 192 TDMRRQAADAGVTFEVAHLCNSPAAMTRPDLAFDMVRPGIAVYGQTPIPALGDMGLRPAM 251 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + R AG+ VSYG RD+ +A+ IGYADG +LSG Sbjct: 252 TLRCPVAQTRSIKAGDGVSYGHTWIAQRDTTVALLPIGYADGVYRSLSGRL--------- 302 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALASG 351 + I G + P +G+I MD + D+ + GD +FGP + D A G Sbjct: 303 --QVLINGRLRPGVGRICMDQFVVDLGPGPVDVSDGDEAILFGPGTRGEHTAQDWAEIIG 360 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+++ R + Y Sbjct: 361 TINYEIVTSPRGRVVRTY 378 >gi|300214211|gb|ADJ78627.1| Alanine racemase [Lactobacillus salivarius CECT 5713] Length = 371 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 27/380 (7%) Query: 3 SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R I L A+K+N ++ L + AVVK NAYG G +A A AG F Sbjct: 5 RHRNTRAIISLEAIKHNVATQISKLKDSQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV- 120 V ++EG+ LR + I +L + + +L + ++ LT KL+ Sbjct: 65 VAIIDEGIALRESGIKDPILILGVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQ 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQ 178 S L +DTG R+G E L + K QL +H + AD Q Sbjct: 125 SLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQLKCEGVFTHFSTADSKDPAYFEKQ 184 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ++F L+ K + +S+ L PN+ L R GIS+YG I+++ ++ Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDVIDETWNLE 244 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ E+ ++ +++ AG + YG ++ I IGYADG+ + G Sbjct: 245 PALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 K I G I+G++ MD M + + G + + G + I DVA Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDVANY 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T +Y+++ I R + Y Sbjct: 351 ADTIHYEIMCNITERVPRIY 370 >gi|90961338|ref|YP_535254.1| alanine racemase [Lactobacillus salivarius UCC118] gi|122449330|sp|Q1WV14|ALR_LACS1 RecName: Full=Alanine racemase gi|90820532|gb|ABD99171.1| Alanine racemase [Lactobacillus salivarius UCC118] Length = 371 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 158/380 (41%), Gaps = 27/380 (7%) Query: 3 SNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R I L A+K+N ++ L AVVK NAYG G +A A AG F Sbjct: 5 RHRNTRAIISLEAIKHNVATQISKLKDGQSLFAVVKANAYGHGMIPVAKAAKEAGANGFC 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV- 120 V ++EG+ LR + I +L + + +L + ++ LT KL+ Sbjct: 65 VAIIDEGIALRESGIKDPILILGVNPASEAVCMAKHDLSVAVGTLEFLTEAQKLLQEEKQ 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQ 178 L +DTG R+G E L + K QL +H + AD Q Sbjct: 125 RLKIHLALDTGMGRIGFRNTEDLKEAVDFIEKHSDQLKCEGVFTHFSTADSKDPAYFEKQ 184 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ++F L+ K + +S+ L PN+ L R GIS+YG I+++ ++ Sbjct: 185 SQKFDELVGVLKKKPKYIHQANSATALWHPNFEGNLVRMGISMYGLNPSGDMIDETWNLE 244 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ E+ ++ +++ AG + YG ++ I IGYADG+ + G Sbjct: 245 PALSLESELVAVKEVEAGSSIGYGATYTSSQSEWIGTVPIGYADGWLRRMQGF------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 K I G I+G++ MD M + + G + + G + I DVA Sbjct: 298 -----KVLIDGQYCEIVGRVCMDQFMVRLPKKYDL--GTKVTLIGENNGKVITAQDVANY 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T +Y+++ I R + Y Sbjct: 351 ADTIHYEIMCNITERVPRIY 370 >gi|256157422|ref|ZP_05455340.1| Alr, alanine racemase [Brucella ceti M490/95/1] gi|256253600|ref|ZP_05459136.1| Alr, alanine racemase [Brucella ceti B1/94] gi|261220737|ref|ZP_05935018.1| alanine racemase [Brucella ceti B1/94] gi|265995910|ref|ZP_06108467.1| alanine racemase [Brucella ceti M490/95/1] gi|260919321|gb|EEX85974.1| alanine racemase [Brucella ceti B1/94] gi|262550207|gb|EEZ06368.1| alanine racemase [Brucella ceti M490/95/1] Length = 399 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T AR+I +R G V YGG IA A+GYA G +LS Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYAAGLFRSLSN-------- 312 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASG 351 G F +PI+G+++MD D+T +++G +++ GP +L+DVA Sbjct: 313 ---KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCD 369 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L +G RYA+ Y Sbjct: 370 TIPYEILTALGNRYARVY 387 >gi|269926050|ref|YP_003322673.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798] gi|269789710|gb|ACZ41851.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798] Length = 376 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 158/374 (42%), Gaps = 21/374 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++DL A+++N ++ AVVK +AYG G +I+ + +AG V V Sbjct: 12 PTWVEVDLNAIRHNLRLYLDKCPGSKVIAVVKGDAYGHGIIEISKTVLDAGAWGLGVARV 71 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPY 124 EG+ LR A I VL + K ++L +S+ + G Sbjct: 72 SEGLLLRSSGIDAPIIVLGYSSEQEIKQAVASDLAISVSTEKMLDWILATAREVGRIPRI 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG RLG+ ++A H L I +H A ADDP + QL F+ Sbjct: 132 HLEVDTGMRRLGVKFEDAAQIVHYIHGTNSVYLEGIFTHFASADDPEGFLFKRQLSMFQD 191 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 LI A+S+ L P HF R GI LYG K++P++ + Sbjct: 192 LIHLIRERGEVPPIVHAANSAAALYAPESHFDAVRIGIGLYGVQPLQFKTYPLRPAMALR 251 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + + AGE VSYG AV GYADGYP LS G+ Sbjct: 252 SVVARVLDVHAGEGVSYGHTYVAKESHRAAVIPCGYADGYPRILSN-----------KGE 300 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 + G P++G++ MD + + + + VGD + + G + +A +GT Y Sbjct: 301 VIVSGIRCPVIGRVCMDNLIVKLPEGVDARVGDAVTLIGSQGSEAVDAGYLARLAGTIPY 360 Query: 356 DLLVRIGTRYAKFY 369 ++L IG R K Y Sbjct: 361 EILCGIGRRPEKIY 374 >gi|295095419|emb|CBK84509.1| alanine racemase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 359 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 19/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFEASDLPTIADQHLHTAVHNEEQLAALETAELSEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + A F S K + Q I+SH A AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPESAEAFYQRLSQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEAR 241 G+ S+A+S GILL P HF RPGI LYG + NK + V++ ++ Sbjct: 182 CEGKPGMR-SIAASGGILLWPQSHFDWARPGIILYGVSPLENKPWGPDFGFKPVMSLVSK 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG D+ + V A+GY DGYP G Sbjct: 241 LIAVREHKAGEPVGYGGTWTSEHDTRLGVVAMGYGDGYPRAA-----------PTGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G V I+G++ MDM D+ + GD ++G + ++ +A + + Y+L+ R+ Sbjct: 290 VNGREVKIVGRVAMDMICVDLGPDAQDKAGDDAVMWGEGLPVERIAEITKVSAYELITRL 349 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 350 TSRVAMKY 357 >gi|300724710|ref|YP_003714035.1| alanine racemase [Xenorhabdus nematophila ATCC 19061] gi|297631252|emb|CBJ91947.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus nematophila ATCC 19061] Length = 359 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 173/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 I+ AL++N + A + +++ AVVK NAYG G + A + + F V + Sbjct: 4 ATAVINRRALRHNLQQVRAQAPDSKVIAVVKANAYGHGLLETACTMED--ADCFGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + + N I + + + + Sbjct: 62 EALALRSGGLVKPILLLEGFFEAADLPVLVVNHIDTVVHSIEQLEALEQADLSHPIKVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + EA F Q +ISH + AD+P+ Q+ERF Sbjct: 122 KLDTGMHRLGVRIDEAEAFYQRLSCCHNVEQPINLISHFSRADEPAVETTQQQIERFMAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 ++ G E S+A+S G+LL H RPGI +YG + ++K + +T ++ + Sbjct: 182 VADKSG-EKSIAASGGVLLWLQAHLDWVRPGIMMYGVSPMVDKTAADFNLIPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK GE V YGG RD+ + V A+GY DGYP + G FI Sbjct: 241 IAVRKHKVGESVGYGGTWSSERDTCLGVVAMGYGDGYPRSA-----------PTGMPVFI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 VPI+G+++MDM D+ + +VGD + ++G + ++ +A SG + Y+L+ ++ Sbjct: 290 NDREVPIVGRVSMDMITVDLGPACQDKVGDEVILWGSALPVEKIAEHSGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|206889591|ref|YP_002248188.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347] gi|259710075|sp|B5YIM9|ALR_THEYD RecName: Full=Alanine racemase gi|206741529|gb|ACI20586.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 363 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 172/378 (45%), Gaps = 34/378 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA----RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + FL+ +I+L +L +N+ + A N + A+VK +AYG G ++A GV Sbjct: 2 SRFLQAEINLKSLIHNFSKIKAHLRNTRVSCKIIAIVKADAYGHGAVEVARVFGLLGVDY 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V EE + LR + I VL + + +F NLIPVI Q F SK Sbjct: 62 LGVAFSEEAIVLREAGIKVPIIVL---FDREIEGVFKYNLIPVIFDYRQAEFLSKEASRR 118 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 GV P ++V+TG RLG+ + + ++ ++SH + A+D Q Sbjct: 119 GVILPVHIKVETGMGRLGIY-ENPCETIKKIAQLDNLKIDGVMSHFSRAEDL--EWTQEQ 175 Query: 179 LERFRTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 +++F + + ++S L F RPG+ LYG + Sbjct: 176 MKKFSKIREFLHNLGMKPLFHIANSQGLNYKEALFDAVRPGLMLYGYGAE-----GFIPC 230 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + +++ IRK G +SYGG +DSLI V +GYADGY +LS Sbjct: 231 MTVKTKLLDIRKLPKGTPISYGGTFVTKKDSLIGVIPVGYADGYFRSLSN---------- 280 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 + ++G VP++G + MD+TM D+TD +++ D + + G +I +A +G Sbjct: 281 -KAEVIVRGKRVPVVGTVCMDLTMIDLTDIQEVQIDDEVILLGKTGSEEITASHIAQWAG 339 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L G R + Y Sbjct: 340 TIPYEVLTSFGGRARRKY 357 >gi|118588136|ref|ZP_01545546.1| alanine racemase [Stappia aggregata IAM 12614] gi|118439758|gb|EAV46389.1| alanine racemase [Stappia aggregata IAM 12614] Length = 380 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 136/366 (37%), Positives = 199/366 (54%), Gaps = 10/366 (2%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL IDL A+ +NW + G AAV+K +AYG G +K A ALY AG + FFV Sbjct: 17 RLTIDLDAIVSNWSLLKDKVGGGTDCAAVLKADAYGTGQDKTAAALYQAGCRTFFVAVPT 76 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR P A I+VL G+ PG + ++ PV+ S+ + + + S P A Sbjct: 77 EALTLRASLPDAVIYVLDGLFPGTAEHFLKHDIRPVLGSLEELVEWSEICRGASKSFPAA 136 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + V+TG +RLGL+ +E ++ Q SL++SHLAC +P +N QL+ F Sbjct: 137 VHVNTGIHRLGLTPEEFTQALSDTAALGPFQPSLVMSHLACGSNPDHPMNRRQLKLFTET 196 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + + I SLA+S+G+LLGP YHF + RPGI+LYGG + +PM+ V EARI+++ Sbjct: 197 TAPFPLIPRSLANSAGVLLGPEYHFDVVRPGIALYGGLAIETEPNPMKPVAKVEARIMMV 256 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G+ + YG ++ TR AV A GYADG D GG G I GY Sbjct: 257 RDVPKGDTIGYGAKQTATRPLRNAVVAAGYADGMIRRAGSTDER------PGGFGTIGGY 310 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 PILG+I+MDM D+TD + G ++++ GP + D+A + T +Y+ L +G Sbjct: 311 KAPILGRISMDMITLDVTDVPDHLLRRGAFVEMLGPGVAASDLAAYAETIDYEYLTSLGR 370 Query: 364 RYAKFY 369 R+ + Y Sbjct: 371 RFERVY 376 >gi|284051398|ref|ZP_06381608.1| alanine racemase [Arthrospira platensis str. Paraca] gi|291568246|dbj|BAI90518.1| alanine racemase [Arthrospira platensis NIES-39] Length = 399 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 168/384 (43%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++D A+ NN + L S R AV+K +AYG G +A + GV DF V Sbjct: 24 HRAWVEVDRWAIANNVKQIRHLLSPETRFMAVIKADAYGHGAVSVAKIVSEIGVDDFAVA 83 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121 ++ EG++LR Q I VL +H E + P L S S Sbjct: 84 TIPEGMELRRLGIQQPILVLGAVHTADEIKAIAHWGLQPTLCTPTQALLFSETLQSIQRS 143 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P L +DTG +RLG ++AL+F ++S I SH A AD + Q R Sbjct: 144 LPVQLNIDTGMSRLGTWWEQALEFVQLVRGLPNLEISGIYSHFATADIRDRTIMDQQHWR 203 Query: 182 FRTLISHYK-----------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229 F+ +++ + LA+S+ L H+ + R G+SLYG + Sbjct: 204 FQQVLAQIQEHTSLLSVPTIKPCLHLANSAATLTDRALHYDMVRVGLSLYGLYPAPHLRS 263 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 +Q ++ ARI I+ AG VSYG + + + IAV IGYADG P LS Sbjct: 264 VINLQPAMSIRARITQIKTIEAGCGVSYGYKFIAKQRTPIAVVGIGYADGVPRQLSNCM- 322 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 K I+G VP +G ITMD M D+T ++VG+ + + G D I D Sbjct: 323 ----------KVLIRGQFVPQIGAITMDQLMLDVTAIPDLQVGEVVTLLGSDRHHSISAD 372 Query: 345 DVALASGTTNYDLLVRIGTRYAKF 368 D A GT ++++L R + Sbjct: 373 DWAQQLGTISWEILCGFKHRLPRI 396 >gi|51246605|ref|YP_066489.1| alanine racemase [Desulfotalea psychrophila LSv54] gi|50877642|emb|CAG37482.1| related to alanine racemase [Desulfotalea psychrophila LSv54] Length = 373 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 106/382 (27%), Positives = 173/382 (45%), Gaps = 24/382 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N F + + +AL+ N+ +M + + A+VK +AYG G ++A AL + Sbjct: 1 MKRNSFNNVTVCRSALRKNFKTMQDKMGQGGKLMAMVKADAYGHGAVEVAKALQDVACSS 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSC 118 F V + E V LR IFV+ G ++FD L PV+ + S + Sbjct: 61 FGVAEIREAVLLRDAGITGDIFVMLGFDLDAVGLMFDYRLTPVVHCYEDIVALSVEGVKR 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G ++VDTG RLG ++ L HN ++ ++SH AD +S + Sbjct: 121 GYEIGCHIKVDTGMRRLGFEPEQVLGVAHNISRLSGVFVAGMLSHFPEADVVNSPSSRDG 180 Query: 179 LERFRT---LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHP 231 + RF + ++ LA+S G+L P F + R GIS+YG + + P Sbjct: 181 IRRFASLDVVLKSEFSTVCHLANSGGVLNFPESLFDMGRSGISIYGYHPAGAIEGGGTSP 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ +RI+ ++K AG VSYG R +L+AV GY DGY +LS Sbjct: 241 FIPAMSFRSRILQVKKVAAGTGVSYGHSYITKRPTLLAVLPTGYEDGYRRSLSN------ 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + I+G P+ G+I M+ + D+TD ++ GD + + G I DD+A Sbjct: 295 -----KAEVLIRGQRAPVRGQICMNACVVDVTDIENVTAGDEVVLLGEQGNERITADDIA 349 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 + T +Y++L +G + Y Sbjct: 350 EWADTISYEILCMLGHTNNRLY 371 >gi|20137243|sp|Q9PF26|ALR_XYLFA RecName: Full=Alanine racemase Length = 362 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 165/369 (44%), Gaps = 19/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ L G + AVVK +AYG G + A AL V F V Sbjct: 2 RPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR QA I +L G +E + + + + + Sbjct: 60 IEEALELRQAGIQAPILLLEGFFEAEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGL +E D + ++++HLA AD+ + + Q F Sbjct: 120 WLKLDSGMHRLGLEPKEFRDAWMSLHRLPQVGEIVLMTHLARADELDNPRTNEQASVFAQ 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 AS+ +SSG+L + RPG+ LYG +S P++ V+ + Sbjct: 180 ASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPIPQESTSLSGPLRPVMMVYS 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I + + AGE V YG R + + V A+GYADGYP G Sbjct: 239 RLIAVHELPAGEPVGYGACFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPL 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y LL Sbjct: 288 LVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCG 347 Query: 361 IGTRYAKFY 369 + R ++Y Sbjct: 348 L-KRVRRYY 355 >gi|219871770|ref|YP_002476145.1| alanine racemase [Haemophilus parasuis SH0165] gi|219691974|gb|ACL33197.1| alanine racemase [Haemophilus parasuis SH0165] Length = 378 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 173/380 (45%), Gaps = 32/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I+ +AL++N + +L+ +++ AVVK NAYG G + L + V+ F V Sbjct: 2 KPATATINGSALRHNMRLIKSLAPHSKICAVVKANAYGQGIRAVIKNLEDQ-VEAFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120 ++E + ++ +I +L G + VI + QL + Sbjct: 61 IKEALTIQESGYAGKILLLEGFFDREELLKTLSRRFDTVIHCLEQLELLENVAQEWQAEK 120 Query: 121 -------------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 L++DTG +RLG+ ++ +F L + +SH + A Sbjct: 121 QKGFWQRKTKIYFPITVWLKIDTGMHRLGIHPEQVAEFYQRLTACPLVECIHFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+ Q+ F T +S +E S+++SSGIL H+ RPGI +YG + Sbjct: 181 DELDCDYTEKQIATFET-VSQEYKVERSISASSGILYWKQAHYDWVRPGIIMYGISPHST 239 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ I V AIGY DGYP Sbjct: 240 PIVDLGFKPVMTLSSSLIAVRSHKAGEPVGYGGSWVSDKDTKIGVVAIGYGDGYPRNA-- 297 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G F+ G VPI+G+++MDM D+ +VGD ++++G + +++ Sbjct: 298 ---------PEGTPVFVNGRKVPIVGRVSMDMMTVDLGIDSQDKVGDEVELWGERLLIEE 348 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA A G+ NY+L+ ++ R Sbjct: 349 VAEAIGSINYELITKLTPRV 368 >gi|16078827|ref|NP_389646.1| alanine racemase [Bacillus subtilis subsp. subtilis str. 168] gi|221309646|ref|ZP_03591493.1| hypothetical protein Bsubs1_09706 [Bacillus subtilis subsp. subtilis str. 168] gi|221313968|ref|ZP_03595773.1| hypothetical protein BsubsN3_09647 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318891|ref|ZP_03600185.1| hypothetical protein BsubsJ_09566 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323164|ref|ZP_03604458.1| hypothetical protein BsubsS_09682 [Bacillus subtilis subsp. subtilis str. SMY] gi|3913040|sp|P94494|ALR2_BACSU RecName: Full=Alanine racemase 2 gi|1750128|gb|AAB41097.1| YncD [Bacillus subtilis] gi|2634148|emb|CAB13648.1| alanine racemase [Bacillus subtilis subsp. subtilis str. 168] Length = 394 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 172/384 (44%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ + ++ AVVK N YG G ++A G + V Sbjct: 6 REVWIEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 SVEEG+ LR A I VL K N+ V + ++++ S Sbjct: 66 SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASAN 125 Query: 124 Y---ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L+ K + + I +H + AD+P + + +Q Sbjct: 126 RLAIHINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQH 185 Query: 180 ERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230 E+F + +S +GIE + +++ + P + + R GI LYG Sbjct: 186 EKFISFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLV 245 Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ +ARI ++ VSYG + +IA IGYADGY LS Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTVSYGATYIAEPNEVIATLPIGYADGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + ++ + GD + I+G +I +D+ Sbjct: 303 --------GFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGDEVVIYGKQKGAEISVDE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY+++ + R +FY Sbjct: 355 VAEMLNTINYEVVSTLSRRIPRFY 378 >gi|120555293|ref|YP_959644.1| alanine racemase [Marinobacter aquaeolei VT8] gi|166969416|sp|A1U388|ALR_MARAV RecName: Full=Alanine racemase gi|120325142|gb|ABM19457.1| alanine racemase [Marinobacter aquaeolei VT8] Length = 357 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +IDL ALK+N+ L+G A AVVK + YG G +A AL F V Sbjct: 3 RPTVARIDLDALKHNFRRARELAGTAYAMAVVKADGYGHGIRSVADALAPE-TSRFAVAC 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + +R + + +L G H + + + + Q + + G S + Sbjct: 62 IEEAIAIRGAGHRHSVVLLQGTHQKDDLAECERSGFEPVLHCQQQLSW---LGAGRSPRF 118 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFR 183 ++V+TG NRLG +E + L ++H ACADD S + +Q F Sbjct: 119 WIKVNTGMNRLGFRPEELPEVMAGLEEAGLKHLAIGFVTHFACADDSDSEMTGLQTRIFE 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240 ++ + + S+ +S+ ++ +RPGI LYG + K + +T +A Sbjct: 179 RAVAPWPDLMRSVGNSAAHFRPNQPLYEWSRPGIMLYGASPMEGKTGAELGLCPAMTLQA 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I R AGE V YG ++D+ + + AIGYADGYP G Sbjct: 239 PLITTRVVRAGESVGYGASWTASQDTRMGMVAIGYADGYPRHAG-----------TGTPA 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++G + +LG+++MDM D++ GD ++++G + +D+VA +GT Y+LL Sbjct: 288 AVRGQRIRLLGRVSMDMLAVDLSAVPEAREGDMVELWGKTVSVDEVATCAGTIGYELLTG 347 Query: 361 IGTRYAKF 368 + +R + Sbjct: 348 VTSRVPRV 355 >gi|307546199|ref|YP_003898678.1| alanine racemase [Halomonas elongata DSM 2581] gi|307218223|emb|CBV43493.1| alanine racemase [Halomonas elongata DSM 2581] Length = 366 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 153/374 (40%), Gaps = 22/374 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 LR IDL AL +N+ L+ +R+ AV+K +AYG G A AL F V Sbjct: 3 RPLRADIDLDALCHNYRLARDLAPTSRSLAVLKADAYGHGLVPCARAL-EGLAPAFAVAC 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE LR A I +L GI E + + + P Sbjct: 62 LEEAEALREGGITAPIVLLEGIFSADELARVEALKLGTVVHSDWQVEALLSHRPAEPIPT 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERFR 183 ++VD+G +RLG + + A ++SH A AD + Q R Sbjct: 122 WVKVDSGMHRLGFAPERAASVWARLSAAPAQACDLHLMSHFATADHADTAYFEHQ-MRTL 180 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240 ++ LA+S L P H RPG+ LYG + S ++ V+T + Sbjct: 181 NALAETLNAPTCLANSPATLARPESHGAWNRPGVMLYGSDPLEASNSASRELEPVMTLRS 240 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R GE V YGG+ + R S I V A GY DGY G Sbjct: 241 QLIAVRDLDEGEPVGYGGRWRAPRPSRIGVVACGYGDGYDRHA-----------IDGTPA 289 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNY 355 + G ++GK++MDM D+TD ++G + ++G + +D+VA T +Y Sbjct: 290 LVAGRRTTLVGKVSMDMLTVDLTDIPEADIGSEVVLWGRAANGEVLSVDEVARHCDTISY 349 Query: 356 DLLVRIGTRYAKFY 369 LL + R + Y Sbjct: 350 TLLTGVLPRVPRRY 363 >gi|37528186|ref|NP_931531.1| alanine racemase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787623|emb|CAE16730.1| alanine racemase, biosynthetic [Photorhabdus luminescens subsp. laumondii TTO1] Length = 359 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 170/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ + AVVK NAYG G + A L + F V + Sbjct: 4 ATAVIDRRALRHNLQRVREIAPKSNLIAVVKANAYGHGLLETAHTLDD--ADCFGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + ++ N I + + + + Sbjct: 62 EALTLRHGGIVKPILLLEGCFDAADLLVLVANHIETVVHSVEQLQALEQAKLSHPVKVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++D+G +RLG+ ++A +F S K + Q I+SH AD+P+ Q+ F+ Sbjct: 122 KLDSGMHRLGVRPEDAEEFYQRLSRCKNVQQPVNIVSHFGRADEPTVDTTCQQIACFQAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G E S+ +S GILL P H RPG+ +YG + +K + +T ++ + Sbjct: 182 CADKPG-EKSIDASGGILLWPEVHQDWVRPGLMMYGVSPLSDKTAVDFNLIPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK AGE V YGG RD+ + V AIGY DGYP + G I Sbjct: 241 IAVRKHKAGESVGYGGIWVSERDTYLGVVAIGYGDGYPRSA-----------PSGTPIHI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI G+++MDM D+ + +VGD + ++G + ++ VA +G Y+L+ ++ Sbjct: 290 NGREVPIAGRVSMDMISVDLGPEATDKVGDEVVLWGDVLPVERVAKHTGIITYELVTKLT 349 Query: 363 TRYAKFY 369 +R Y Sbjct: 350 SRVVMEY 356 >gi|255038732|ref|YP_003089353.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Dyadobacter fermentans DSM 18053] gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053] Length = 824 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 160/371 (43%), Gaps = 21/371 (5%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + A +G + A+VK AYG G ++A L V V +E Sbjct: 462 LEINLDALVHNLNYYRARAGQGTKIMAMVKAFAYGSGSSEVAALLQYHRVDYLGVAYTDE 521 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY--- 124 GV LR I V+ P + + + S + + G Sbjct: 522 GVMLRQSGITLPIMVMNATLPTFDLLWQYKLEPEIYSRRILTDWIEYITRKGEPTNTPSV 581 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 L++DTG +RLG + +++ + SHL AD+ + + Q +F Sbjct: 582 HLKLDTGMHRLGFVKDDYEWLVEQLRQNPALKVATLFSHLVGADEGVHNEFSRKQYAQFM 641 Query: 184 TLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + +S+GI+ P Y + R GI LYG +Q+V T Sbjct: 642 EGAELIEATLGYKTIKHILNSAGIVRFPEYRLDMVRLGIGLYGVEATGQDQRALQSVGTL 701 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + + ++ +GE V Y + + DS IA AIGYADGY L G Sbjct: 702 KTIVSQVKYLSSGETVGYSRKGVVDHDSAIATLAIGYADGYDRGLGNGV----------G 751 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 K ++ G + P +G I MDMTM D+T++ +E GD + +FG ++ + ++A T Y++L Sbjct: 752 KVWVNGTLCPTIGNICMDMTMIDVTNA-QVEEGDEVIVFGKEVPITELAKTINTIPYEIL 810 Query: 359 VRIGTRYAKFY 369 IG R + + Sbjct: 811 TGIGDRVKRVF 821 >gi|187779670|ref|ZP_02996143.1| hypothetical protein CLOSPO_03266 [Clostridium sporogenes ATCC 15579] gi|187773295|gb|EDU37097.1| hypothetical protein CLOSPO_03266 [Clostridium sporogenes ATCC 15579] Length = 397 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 162/384 (42%), Gaps = 27/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 11 RNHRPVWEEVNLDNLSYNMKNIKNKVKCKEIFAVVKANGYGHGAVDIASTLLENGATRLS 70 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 V + E ++LR I +L + I + N+ PV+ S SK Sbjct: 71 VACLSEAIELREGGITCPINILGITPSTLFEDIINYNIEPVVFSYDYAYQLSKAACQKNR 130 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ E+L+ N ++ + SH + +D+ + Q Sbjct: 131 IVKTHIAVDTGMGRLGVDPTVESLEEIKKIQNLSNIKIEGLCSHFSSSDEKDKSYSEYQF 190 Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 +RF+ + +A+S+ I+ PN + R GI LYG + ++ Sbjct: 191 KRFQHFRKKLIEMNIKIPIHHMANSAAIIDLPNTYLDGVRAGIILYGYYPSMEVNKENLH 250 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T +A I+ I+ +G+ V Y + K R S +A+ +GY DGY LS Sbjct: 251 IKQVMTLKANIVHIKTIDSGKYVGYNRKFKTKRKSRVAILPLGYGDGYTRFLSNR----- 305 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDD 345 GK I G PI+G I MD M D+TD ++VGD I G D +D Sbjct: 306 ------GKVIINGQYAPIIGNICMDQCMIDVTDIKEVKVGDEAIIIGKDYINNLKYDAED 359 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 ++ G T+ +++ I R + Y Sbjct: 360 ISSQVGMTSGEIMSIISKRVPRVY 383 >gi|290476881|ref|YP_003469792.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus bovienii SS-2004] gi|289176225|emb|CBJ83030.1| alanine racemase 1, PLP-binding, biosynthetic [Xenorhabdus bovienii SS-2004] Length = 359 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 172/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + + +++ AVVK NAYG G ++A + + F V + Sbjct: 4 ATAVIDRRALRHNLQQVRVKAPDSKLVAVVKANAYGHGFLEVAYTMED--ADSFGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + + N I + + + + + Sbjct: 62 EALALRNGGIVKPILLLEGFFEAADLPVLVVNHIETVVHSIEQLEALEQANLSHPIKVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + EA +F Q I+SH + AD+ + Q++RF Sbjct: 122 KLDTGMHRLGVRIDEAEEFYQRLSCCHNVEQPVNIVSHFSRADELTVDTTPQQIDRFMAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 I+ G E S+A+S GILL P H RPGI +YG + +K + +T ++ + Sbjct: 182 IADKSG-EKSIAASGGILLWPQAHLDWVRPGIMMYGASPIADKTAADFNLIPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK + E V YGG RD+ + V A+GY DGYP + G I Sbjct: 241 IAVRKHKSDESVGYGGTWISERDTTLGVVAVGYGDGYPRSA-----------PSGTPVLI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VP++G+++MDM D+ +VGD + ++G + ++ +A +G + Y+L+ ++ Sbjct: 290 NGRKVPLVGRVSMDMITVDLGPECYDKVGDEVTLWGNILPVEKIAEHTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R Y Sbjct: 350 SRVVMEY 356 >gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823] gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823] Length = 762 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 177/371 (47%), Gaps = 21/371 (5%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++I+L+A+K+N + + A+VK ++YG G +K+AP L +G+++F V +E Sbjct: 400 VEINLSAIKHNVSFYQSRIPKEVKILAMVKASSYGSGADKVAPFLQQSGIRNFGVAFADE 459 Query: 68 GVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPY 124 GV+LR V+ P +I + L P I S QL + + ++P Sbjct: 460 GVELRKAGIGISSSIVVMNPDPEHSDLIIEYRLEPAIYSFEQLDEFITALIHKQISAYPI 519 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183 L+ DTG +RLG + + ++ ++ I SHLA AD+P QL F Sbjct: 520 HLKFDTGMHRLGFAPSDKERILAIINSQPEVKIQGIYSHLADADNPIHSEFTQKQLTSFE 579 Query: 184 TLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 +++S+++ A + +S G L P + + R GIS+YG T+ +Q V+ Sbjct: 580 SIVSYFRTNSSDSFLAHILNSEGSLRYPESCYDMIRLGISMYGYTENNQLKASLQGSVSW 639 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I I+ G+ + YG + D IA+ +GYADG+ +LS G Sbjct: 640 YSSISQIKAVPKGDFIGYGISYQAIEDMTIAIIPVGYADGFRRSLSNG----------KG 689 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 FI G P++G++ MDM M DI+ ++ D ++I G + ++ A + T Y+++ Sbjct: 690 SVFIHGIKCPVVGRVCMDMIMVDISSV-DAKINDSVEIIGQNQPMEVFAKSMETIPYEVM 748 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 749 TGLSKRMHRVY 759 >gi|167855746|ref|ZP_02478501.1| alanine racemase [Haemophilus parasuis 29755] gi|167853143|gb|EDS24402.1| alanine racemase [Haemophilus parasuis 29755] Length = 378 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 173/380 (45%), Gaps = 32/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I+ +AL++N + +L+ +++ AVVK NAYG G + L + V+ F V Sbjct: 2 KPATATINGSALRHNMRLIKSLAPHSKICAVVKANAYGQGIRAVIKNLEDQ-VEAFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120 ++E + ++ +I +L G + VI + QL + Sbjct: 61 IKEALTIQESGYAGKILLLEGFFDREELLKTLSRRFDTVIHCLEQLELLENVAQEWQAEK 120 Query: 121 -------------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 L++DTG +RLG+ ++ +F L + +SH + A Sbjct: 121 QKGFWQRKTKIYFPITVWLKIDTGMHRLGIHPEQVAEFYQRLTACPLVECIHFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 D+ Q+ F T +S +E S+++SSGIL H+ RPGI +YG + Sbjct: 181 DELDCDYTEKQIATFET-VSQEYKVERSISASSGILYWKQAHYDWVRPGIIMYGISPHTT 239 Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ I V AIGY DGYP Sbjct: 240 PIIDLGFKPVMTLSSSLIAVRSHKAGEPVGYGGSWVSDKDTKIGVVAIGYGDGYPRNA-- 297 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G F+ G VPI+G+++MDM D+ +VGD ++++G + +++ Sbjct: 298 ---------PEGTPVFVNGRKVPIVGRVSMDMMTVDLGIDSQDKVGDEVELWGERLLIEE 348 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA A G+ NY+L+ ++ R Sbjct: 349 VAEAIGSINYELITKLTPRV 368 >gi|30249388|ref|NP_841458.1| alanine racemase [Nitrosomonas europaea ATCC 19718] gi|81838719|sp|Q82UR4|ALR_NITEU RecName: Full=Alanine racemase gi|30138751|emb|CAD85328.1| Alanine racemase [Nitrosomonas europaea ATCC 19718] Length = 362 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 164/368 (44%), Gaps = 20/368 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +R I+ AL++N + AR AVVK +AYG G ++A AL V F V Sbjct: 2 SRPIRAFINCAALRHNLAVVRRHVHQARIMAVVKADAYGHGLLRVARALDA--VDGFAVL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +E ++LR I +L G + + I L VI QL+ G Sbjct: 60 ELEAAIQLREAGFSQLILLLEGFFSIEEIEAINHYRLSTVIHCHEQLSMLLAHKKTGKPD 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLER 181 + L+++TG NRLG +E + +++H ACADD QL Sbjct: 120 IF-LKINTGMNRLGFRPEEGNSVLNRLRQWHTDISITLMTHFACADDLLEADHVDQQLGS 178 Query: 182 FRTLISHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 F L +G I +LA+S+ IL P H RPGI LYG + +K +Q V+T Sbjct: 179 FARLEEKREGCIPRTLANSAAILRYPGTHADWVRPGIILYGASPLPDKTGIELGLQPVMT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +RII ++ + + YGGQ + + V A GYADGYP G Sbjct: 239 LTSRIIAVQHLDFSDRLGYGGQFVADQPMRVGVVAAGYADGYPRHA-----------PTG 287 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + G ++G+++MDM D++ G + ++G + +++VA ++ T +Y+L Sbjct: 288 TPVLVNGRRTRLIGRVSMDMLTVDLSGINEAGAGSLVTLWGEGLPVEEVARSAQTISYEL 347 Query: 358 LVRIGTRY 365 L + R Sbjct: 348 LAALSPRV 355 >gi|291484362|dbj|BAI85437.1| hypothetical protein BSNT_02911 [Bacillus subtilis subsp. natto BEST195] Length = 395 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 172/384 (44%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ + ++ AVVK N YG G ++A G + V Sbjct: 7 REVWIEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 SVEEG+ LR A I VL K N+ V + ++++ S Sbjct: 67 SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASAN 126 Query: 124 Y---ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L+ K + + I +H + AD+P + + +Q Sbjct: 127 RLAIHINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQH 186 Query: 180 ERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230 E+F + +S +GIE + +++ + P + + R GI LYG Sbjct: 187 EKFISFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLV 246 Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ +ARI ++ VSYG + +IA IGYADGY LS Sbjct: 247 KLEPALSLKARIAYVKTMRTEPRTVSYGATYVAEPNEVIATLPIGYADGYSRALSNR--- 303 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + ++ + GD + I+G +I +D+ Sbjct: 304 --------GFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGDEVVIYGKQKGAEISVDE 355 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY+++ + R +FY Sbjct: 356 VAEMLNTINYEVVSTLSRRIPRFY 379 >gi|296330975|ref|ZP_06873450.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674493|ref|YP_003866165.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151980|gb|EFG92854.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412737|gb|ADM37856.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23] Length = 394 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 172/384 (44%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ + ++ AVVK N YG G ++A G + V Sbjct: 6 REVWIEVNLDAIKKNLRAIRRHIPHKSKIMAVVKANGYGHGSVEVARHALEHGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-- 121 SVEEG+ LR A I VL K N+ V + ++++ S Sbjct: 66 SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASTD 125 Query: 122 -HPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L K + + I +H + AD+ + + +Q Sbjct: 126 RLAIHINVDTGMGRLGVRTKKELLAVVKALKASKSLRWTGIFTHFSTADEADTTLTKLQH 185 Query: 180 ERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230 E+F + +S +GIE +++++ + P + + R GI LYG Sbjct: 186 EKFISFLSFLKNQGIELPTVHMSNTAAAIAFPEFSADMIRLGIGLYGLYPSTYIKQLNLV 245 Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ +ARI ++ +SYG D +IA IGYADGY TLS Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTISYGATYIAEPDEVIATLPIGYADGYSRTLSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + +S + GD + I+G +I +D+ Sbjct: 303 --------GFVLHRGKRVPLAGRVTMDMIMVSLGESGEGKQGDEVVIYGQQKGAEISVDE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY+++ + R +FY Sbjct: 355 VAEMLNTINYEVVSTLSRRIPRFY 378 >gi|257438081|ref|ZP_05613836.1| alanine racemase [Faecalibacterium prausnitzii A2-165] gi|257199412|gb|EEU97696.1| alanine racemase [Faecalibacterium prausnitzii A2-165] Length = 401 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 160/395 (40%), Gaps = 36/395 (9%) Query: 1 MHSNEF---LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M F + +IDL AL+ N+ ++ +G+ AVVK ++YG G + A G Sbjct: 1 MQMQNFEKHVWAEIDLDALRANFRTVKQRAGSLPLCAVVKADSYGHGAVQCARVFAQEGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 V+ + E ++LR I +L + P + ++ S+PQ S+ Sbjct: 61 SWLAVSCLAEALQLRRSGQTLPILILGHVQPAYAAALIRNDITAACYSLPQAQALSEAAQ 120 Query: 118 -CGVSHPYALQVDTGFNRLGL----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 G L VDTG R+G A+ + +++ + H + ADD + Sbjct: 121 AAGGRVKVHLAVDTGMGRIGFALRTDFDAAIAEAIAACTLPGLEMTGLFQHFSVADDTAE 180 Query: 173 H---VNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYH------FQLTRPGIS 218 + Q F + ++ +S+G++L P++ + RPGI Sbjct: 181 ENIAYTAEQHRLFVQACSALTAAGHEPGIVHCDNSAGVMLHPDWPEGLPRAHCMARPGII 240 Query: 219 LYGGTDKINKSHPMQTV-VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 LYG + + + + +++ G+ SYG + R + +A GYAD Sbjct: 241 LYGFDPSDEVRFGLFRPVMKLKTVVSMVKVLQPGQSTSYGRRFTAERPTPVATLCTGYAD 300 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 GYP LS G I G P+LG++ MD M D++ ++ GD + Sbjct: 301 GYPRQLS----------CGKGIVEIHGTPCPVLGRVCMDQMMVDLSAVPGTVQEGDEAIL 350 Query: 337 FGPDI--KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +G + +D+A + T Y++L + R + Y Sbjct: 351 WGGTVSDSAEDIAHKTDTITYEVLCGVSRRVPRVY 385 >gi|299133317|ref|ZP_07026512.1| alanine racemase [Afipia sp. 1NLS2] gi|298593454|gb|EFI53654.1| alanine racemase [Afipia sp. 1NLS2] Length = 383 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 133/377 (35%), Positives = 205/377 (54%), Gaps = 19/377 (5%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNARTAA-VVKDNAYGLGCEKIAPALYNAG 56 M N R L +DL A+++N+ + + + A VVK + YGLG ++ AL+ G Sbjct: 1 MEKNGRFRGGTLAVDLRAVRSNYRLLRSRLRASTLCAGVVKADGYGLGATYVSRALFAEG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 + FFV ++EG+ LR Y P+ A IF+L G+ G E+ L+PV++S Q ++ Sbjct: 61 CRHFFVAHLDEGLALRPYLPRSAAIFILNGLPRGAERECAAAGLVPVLNSPEQAGAWAGC 120 Query: 116 MSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G P LQVD+G NRLGL+ EA F + L I+SHLACAD P+ Sbjct: 121 ARTRGQRLPAVLQVDSGMNRLGLTAGEAARFAETPARSGVVDLRYIMSHLACADTPAHEA 180 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 N++QL FR L + + SLA+SSGI LGP+YHF L RPG +LYG ++PMQ+ Sbjct: 181 NAMQLATFRQLAGLFPDVPRSLANSSGIFLGPDYHFSLVRPGSALYGVNPDPAATNPMQS 240 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 VV A++I +R + G+ V YG + ++ +A ++GYADG+ Sbjct: 241 VVRLTAKVIQLRNVMPGDCVGYGWDARARGEARLATLSLGYADGFHRAWG---------- 290 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG--DYIQIFGPDIKLDDVALASGT 352 GG F +G +P++G+++MD + D + +G +++ G D LDD+A +GT Sbjct: 291 -KGGAVFFEGLRLPVVGRVSMDSIVIDASAIAPGRLGPDSEVEVIGDDQPLDDLASVAGT 349 Query: 353 TNYDLLVRIGTRYAKFY 369 Y++L +G+RY + Y Sbjct: 350 IGYEVLTGLGSRYQRIY 366 >gi|261409040|ref|YP_003245281.1| alanine racemase [Paenibacillus sp. Y412MC10] gi|261285503|gb|ACX67474.1| alanine racemase [Paenibacillus sp. Y412MC10] Length = 395 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 167/384 (43%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I+L L+ N+++ AL + + A VK NAYG G ++A L G V Sbjct: 6 RPTLAEINLDHLRANYNAFREALPDHMKLLACVKANAYGHGAVEVARELQQLGAAYLSVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSH 122 ++E ++LR I VL P I ++ + I + SS + + Sbjct: 66 FLDEAIELRQGGISVPILVLGYTPPEAVGIAYEYDVTITLFSSEVLQAIKALPVKPEKPL 125 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++D+G RLGL ++A+ F +F+ + + +H A AD+ + Q R Sbjct: 126 KVHIKIDSGMGRLGLLPGEDAISFIEEAFSLPQVVVEGMFTHFARADEENKDYTLGQYRR 185 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 F+ + + + + +S+ + P + + R GI LYG K+ ++ Sbjct: 186 FQGVADALRDKDYHIPIIHTGNSAAAIDTPELSYNMVRVGIGLYGLYPSDEVNRKTVSLR 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T + +++ ++ +SYG + ++ I IGYADG+ LSG Sbjct: 246 PVMTLKTKLVYVKNLPPHSGISYGTKYVTEQEERIGTLPIGYADGFSRMLSG-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD----IKLDD 345 + I+G VP++G I MD M + ++ I+ G+ + + G I D+ Sbjct: 298 ---KAEVLIRGRRVPVVGNICMDQCMVSLKSFAEEAEQIKAGEEVVLIGQQSGECITADE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y+++ I R + Y Sbjct: 355 LAAKLGTIHYEVVCMIAHRVPRLY 378 >gi|28199693|ref|NP_780007.1| alanine racemase [Xylella fastidiosa Temecula1] gi|31076596|sp|Q87AK1|ALR_XYLFT RecName: Full=Alanine racemase gi|28057814|gb|AAO29656.1| alanine racemase [Xylella fastidiosa Temecula1] Length = 365 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 169/373 (45%), Gaps = 19/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S IDL AL++N+ L G + AVVK +AYG G + A AL V F Sbjct: 1 MCSVRPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR QA I +L G +E + + + + + Sbjct: 59 AVACIEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPS 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++D+G +RLGL +E D + + ++++HLA AD+ + + Q Sbjct: 119 PIGVWLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQAS 178 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVV 236 F AS+ +SSG+L + RPG+ LYG + S P++ V+ Sbjct: 179 VFAHASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +++I +R+ AGE V YG R + + V A+GYADGYP Sbjct: 238 MVYSKLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y Sbjct: 287 GTPLLVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQ 346 Query: 357 LLVRIGTRYAKFY 369 LL + R ++Y Sbjct: 347 LLCGL-KRVRRYY 358 >gi|237654641|ref|YP_002890955.1| alanine racemase [Thauera sp. MZ1T] gi|237625888|gb|ACR02578.1| alanine racemase [Thauera sp. MZ1T] Length = 361 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 165/365 (45%), Gaps = 15/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL+AL++N+ G R AVVK NAYG G + A AL + F V Sbjct: 2 RPARALIDLSALRHNYLLARERHGG-RALAVVKANAYGHGALRCAQALRDE-ADGFAVAF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E ++LR A I +L G+ E + ++ + + Sbjct: 60 LGEALELRAGGIDAPILLLEGVFAADELAEAARQRLWMVVHHEEQLCMLERTPLAAPVDV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NR G ++++H A AD+P QL+RF Sbjct: 120 WLKVNSGMNRAGFVGDAVARTWRRLQASGKVGRIVLMTHFARADEPELGTTLEQLQRFEA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G S+A+S+ IL P RPGI LYG + + ++ V+T E+ ++ Sbjct: 180 ATAGLPGAR-SVANSAAILAWPQARRDWARPGILLYGADPMPAEGNGLRAVMTLESAVMA 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ +GE + YGG+ R + + + A+GYADGYP V G ++G Sbjct: 239 VREIASGEALGYGGRFVAERPTRVGLVAMGYADGYPR-----------VVPDGTPVAVEG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM D+T +G ++++G + ++ +A A+GT +Y+LL + R Sbjct: 288 RASRIIGRVSMDMLTIDLTALPEACLGSQVELWGKQVPINHIAQAAGTISYELLCNV-KR 346 Query: 365 YAKFY 369 Y Sbjct: 347 VRLEY 351 >gi|225572058|ref|ZP_03780922.1| hypothetical protein RUMHYD_00352 [Blautia hydrogenotrophica DSM 10507] gi|225040493|gb|EEG50739.1| hypothetical protein RUMHYD_00352 [Blautia hydrogenotrophica DSM 10507] Length = 384 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 161/385 (41%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M N ++ I L A+ N+ M L + AV+K + YG G IA + + V Sbjct: 1 MEKNSRTKVSISLDAIAQNFEEMHRKLPKETKMMAVIKADGYGHGALAIAKTVESYEYVW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 F + +E +LR I VL + ++ + P + S+ Sbjct: 61 GFATATAQEAGQLREAGIHKPILVLGYTFQEDDALLVREEIRPTVFQYSTAKRLSQEAAR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + L +DTG R+G +Q E++ ++ + +H A AD+ + Sbjct: 121 QGKTVHIHLALDTGMARIGFPVQKESVREIQKIQKLDFLEIEGLFTHFAKADEADLTYTA 180 Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 QL ++ A+S+GI+ P + L R GI +YG + Sbjct: 181 EQLRQYEQFCQWLSQEGVTVPIRHCANSAGIMCVPRAYLDLVRAGIIMYGIYPSDEVERE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ + +A+I ++ AG VSYGG +++ IA +GYADGYP +LS Sbjct: 241 KLFLRPAMEWKAQIAYVKTVPAGCAVSYGGTYVTEKETKIATIPVGYADGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G + G PILG++ MD M D+TD + D + + G D + ++ Sbjct: 298 --------KGWILVHGQKAPILGRVCMDQFMVDVTDIPQVRQHDEVTLIGWDHQAFLSVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A SG Y+ + IG+R + Y Sbjct: 350 ELARLSGRFPYEFVCDIGSRVPRVY 374 >gi|169334902|ref|ZP_02862095.1| hypothetical protein ANASTE_01308 [Anaerofustis stercorihominis DSM 17244] gi|169257640|gb|EDS71606.1| hypothetical protein ANASTE_01308 [Anaerofustis stercorihominis DSM 17244] Length = 377 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 157/370 (42%), Gaps = 20/370 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +KI+L L NN+ + + V+K +AYG G E A L + G F V+SV E Sbjct: 8 VKINLDNLINNYRVIKNKVKGKKVIPVIKADAYGHGAEICAKILMSEGADLFAVSSVYEA 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127 + LR Y A + +L + + I D ++IP I ++ ++ ++ Sbjct: 68 MCLRDYGIDADVLILGYVPDRKINKIIDNDIIPTIYNLDFAKKLNEEAGKKNKKIKVHIK 127 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 ++TG NRLG + E + + SH A +D+ ++ Q E F I Sbjct: 128 INTGMNRLGFNKDEIDEAFKLLKGLDNLIYEGLFSHFATSDEVDKSYSNKQFEIFDYAIK 187 Query: 188 HYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTAEA 240 K + +A+S+ I Y R GI LYG K +P + V++ Sbjct: 188 KSKEYDLGVTINHIANSAAITDLDEYSLDAVRAGIVLYGVYPSEVKPEINPYKPVMSFYT 247 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I I E V YG + +AV +GYADGY LS G+ Sbjct: 248 TITNIFHIDKDETVGYGRTFTAKEKTKVAVMCVGYADGYNRKLSN-----------KGEV 296 Query: 301 FIKGY-MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I ++G + MDMTM +I + IE+GD ++IFG +I + +A T Y+LL Sbjct: 297 LINNKYKAKVIGNVCMDMTMLEIPEEADIEIGDNVEIFGENINISSLAEICETIPYELLC 356 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 357 CINKRVKREY 366 >gi|119900214|ref|YP_935427.1| alanine racemase [Azoarcus sp. BH72] gi|166919546|sp|A1KCI5|ALR_AZOSB RecName: Full=Alanine racemase gi|119672627|emb|CAL96541.1| alanine racemase [Azoarcus sp. BH72] Length = 353 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 161/366 (43%), Gaps = 17/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ + G R AVVK NAYG G + A AL F V Sbjct: 2 RPATALIDLDALRHNYRLARSRHGG-RALAVVKANAYGHGAVRCAQALAAE-ADGFAVAF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR I +L G+ + + + L PV+ Q+ + Sbjct: 60 LDEALELRAAGITQTIVLLEGVFDAAELEQVVAHGLWPVVHHAAQIEMIEQAALA-RPLD 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NR G +++H A AD+P + QL F Sbjct: 119 IWLKVNSGMNRAGFVGDAVGSAWQRLRASGKVGEITLMTHFARADEPQVIATAEQLADFD 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 T G SLA+S+ +L P+ H RPGI LYG + + +Q V+T E+ +I Sbjct: 179 TATRGLPG-PRSLANSAAVLGWPDAHADWARPGILLYGADPMPGEGNGLQPVMTLESGVI 237 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R AG + YG + R I + A+GYADGYP + G + Sbjct: 238 AVRDLAAGAPLGYGARYVAERPRRIGLVAMGYADGYPRSA-----------PDGTPVVVD 286 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G ++G+++MDM D+TD +G ++++G + ++ VA +GT Y+LL + Sbjct: 287 GQPSMLVGRVSMDMLTVDLTDLPQAGIGSRVELWGRQVPINQVAAGAGTIAYELLCNV-K 345 Query: 364 RYAKFY 369 R Y Sbjct: 346 RVVFRY 351 >gi|119485491|ref|ZP_01619819.1| alanine racemase [Lyngbya sp. PCC 8106] gi|119457247|gb|EAW38373.1| alanine racemase [Lyngbya sp. PCC 8106] Length = 404 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 165/385 (42%), Gaps = 33/385 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+L A+ N + L S AVVK +AYG G +A + AG F V Sbjct: 28 QRSWVEINLAAIAYNVEQIKTLLSPQTTLMAVVKADAYGHGAVSVAKTVSQAGAGAFAVA 87 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121 + EG++LR + I VL + E + PQ L + Sbjct: 88 TTPEGIELREAGIKQPILVLGAAYTPDEVKAISHWQLQPTLCTPQQALLFSEILSQLNQT 147 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +DTG +RLG S Q A++F +++ I SH A AD P + Q +R Sbjct: 148 LEVHLNIDTGMSRLGTSWQHAVEFVQLVQRLPNLKIAGIYSHFATADSPDQTLMRQQHQR 207 Query: 182 FRTLISHY-------------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 F+ +I +++S+ L H+ L R G+++YG + Sbjct: 208 FQDVIKKIGVNPQNGLTKETVSRPCLHISNSAATLTDSALHYDLVRVGLAIYGLYPAPHL 267 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ + +A++ I+ AG VSYG Q + + +AV IGYADG P LS Sbjct: 268 AATIDLKPAMQVKAKVTQIKMIEAGTGVSYGYQYVAEKITRVAVVGIGYADGIPRNLSN- 326 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 K ++G ++P +G ITMD M D+T ++VG+ + + G + I Sbjct: 327 ----------KMKVLVRGQLLPQIGAITMDQLMIDVTSMPDLQVGEVVTVLGQEGENTIS 376 Query: 343 LDDVALASGTTNYDLLVRIGTRYAK 367 +D A T ++++L R + Sbjct: 377 AEDWAADLDTISWEILCGFKHRLPR 401 >gi|253991385|ref|YP_003042741.1| alanine racemase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782835|emb|CAQ86000.1| alanine racemase) [Photorhabdus asymbiotica] Length = 359 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 167/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ + AVVK NAYG G + A L + F V + Sbjct: 4 ATAVIDRRALRHNLQRVREIAPKSNLIAVVKANAYGHGLLETAHTLDD--ADCFGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + + N I + + + + Sbjct: 62 EALTLRHGGIVKPILLLEGCFDAADLPVLVANHIETVVHSIEQLEALEQAKLSHPVKVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++D+G +RLG+ ++A +F S K + Q I+SH AD+P+ Q+ F+ Sbjct: 122 KLDSGMHRLGVRPEDAEEFYQRLSRCKNVQQPVNIVSHFGRADEPTLDTTCQQIACFQAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242 + G E S+ +S GILL P H RPG+ +YG + K + +T ++ + Sbjct: 182 CADKPG-EKSIDASGGILLWPEVHQDWVRPGLMMYGVSPLSDKTAADFNLMPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +RK AGE V YGG RD+ + V AIGY DGYP G +I Sbjct: 241 IAVRKHKAGEAVGYGGTWISERDTCLGVVAIGYGDGYPR-----------CAPSGTPIYI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI G+++MDM D+ + +VGD ++G + ++ +A +G Y+L+ ++ Sbjct: 290 NGREVPIAGRVSMDMISVDLGPDAADKVGDEAVLWGDVLPVERIAECTGIITYELVTKLT 349 Query: 363 TRYAKFY 369 +R Y Sbjct: 350 SRVVMEY 356 >gi|300023238|ref|YP_003755849.1| alanine racemase [Hyphomicrobium denitrificans ATCC 51888] gi|299525059|gb|ADJ23528.1| alanine racemase [Hyphomicrobium denitrificans ATCC 51888] Length = 380 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 196/364 (53%), Gaps = 9/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + +DL + NW ++ A A+ AAVVK +AYGLG E++ AL +AG FF+ + EE Sbjct: 18 ITVDLAQIAANWRALAAKVAPAQCAAVVKADAYGLGAERVIAALSHAGCTTFFIATPEEA 77 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQ 127 R P+A IF L G+ G + + PV+S++ + + + G + P AL Sbjct: 78 ETARKLAPEAHIFALDGLVGGCATAFANQGVTPVLSTLDDIAAWAALARMRGETLPAALH 137 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL +++ T + +L L++SHLA AD+P N QL F TL + Sbjct: 138 IDTGLNRLGLPVRDVRRLTADPSVLSGLRLELVMSHLASADNPRDPKNRDQLLAFETLTA 197 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ SLA+S G++LGP YHF L RPG ++YGG P++ V ARI+ + Sbjct: 198 LFPGVPRSLAASDGLMLGPAYHFNLVRPGYAIYGGQASQLAPAPVKPAVRVAARILAVAD 257 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y + R S IA A GYADG P S +P GG I G++ Sbjct: 258 VAPGETVGYSATWRAKRPSRIATIAAGYADGVPRNSS------APDGRPGGHVLIDGHLA 311 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++MD+ D+TD ++ D+ + G + ++D +A+ T Y++L R+G R+ Sbjct: 312 PLVGRVSMDLITVDVTDLPDGAVKPHDFATLIGEGLTIEDAGIAAATIGYEILTRLGPRF 371 Query: 366 AKFY 369 + Y Sbjct: 372 TRLY 375 >gi|217077374|ref|YP_002335092.1| alr alanine racemase [Thermosipho africanus TCF52B] gi|217037229|gb|ACJ75751.1| alr alanine racemase [Thermosipho africanus TCF52B] Length = 364 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 145/372 (38%), Gaps = 23/372 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +I++ N A+ V+K NAYG G +A + G+ F V Sbjct: 5 SRRTFAEININNYIENLKYFQKKCSPAKVMPVIKANAYGHGAVMLAKSAEKMGIDYFAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR I V + + D N+ ++ + Sbjct: 65 FLEEALILRKNGINTNILVFNYLDKDFVPLAADNNITI---TIISNEQVEEYKDLIKKPK 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + +DTG NR+G+ ++A + ++ I +H A AD +++ Sbjct: 122 VHINIDTGMNRVGIEPKDA-MKIYEKLISNGFEVEGIYTHFAVADSLKKEDIEFTKKQYE 180 Query: 184 TLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEAR 241 + ++ +S+ L G R GI+ YG K ++ V+T ++ Sbjct: 181 KFLEVNLPVKIRHTNNSAASLSGIISCGDYVRIGIASYGLMPSNQVKDENLKPVLTWKSV 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + ++ GE VSYG D +A +GYADGY LS G+ Sbjct: 241 VSHVKTLKKGESVSYGRTFVAPYDMKVATIPVGYADGYWRHLSN-----------NGEVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDL 357 I G ILG++ MD + + D +++GD + + G I +++A GT NY++ Sbjct: 290 INGKRRKILGRVCMDQFVVEADD--EVKIGDEVILIGKQGNEFISAEEIADKVGTINYEV 347 Query: 358 LVRIGTRYAKFY 369 RI R + Y Sbjct: 348 TCRISERVPRIY 359 >gi|309973248|gb|ADO96449.1| Alanine racemase [Haemophilus influenzae R2846] Length = 360 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 168/358 (46%), Gaps = 16/358 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I ALK N + + N++ AVVK NAYG G +A L V F V +EE + Sbjct: 10 ISSHALKQNLEIIKQKALNSKIIAVVKANAYGHGVVFVASTLEQN-VDCFGVARLEEALA 68 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G Q+ I N I + + K + L++DT Sbjct: 69 LRSNGITKPILLLEGFFNEQDLPILAVNNIETVVHNHEQLEALKRSNLPSPIKVWLKIDT 128 Query: 131 GFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG++L E F ++ +SH + AD+ S +Q+ RF + Sbjct: 129 GMHRLGVALDEVDYFYQELKKLPQIQPHLGFVSHFSRADELESDYTQLQINRFLSATKDK 188 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIRK 247 +G E ++A+S GIL P H + RPGI +YG + I K + V+ + +I +R Sbjct: 189 QG-ERTIAASGGILFWPKSHLECIRPGIIMYGISPTDTIGKEFGLTPVMNLTSSLIAVRH 247 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YGG RD+ I V A+GY DGYP V G ++ G +V Sbjct: 248 HKQGDPVGYGGIWTSPRDTKIGVVAMGYGDGYPR-----------DVPEGTPVYLNGRLV 296 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI+G+++MDM D+ VGD + ++G ++ ++ VA +G +Y+L+ ++ R Sbjct: 297 PIVGRVSMDMLTVDLGADSQDLVGDEVILWGKELPIETVAKFTGILSYELITKLTPRV 354 >gi|282901702|ref|ZP_06309618.1| Alanine racemase region protein [Cylindrospermopsis raciborskii CS-505] gi|281193465|gb|EFA68446.1| Alanine racemase region protein [Cylindrospermopsis raciborskii CS-505] Length = 391 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 27/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ ++IDL AL NN + LS ++ AVVK +AYG G +A + AG V Sbjct: 14 SQRAWVEIDLGALSNNVKQLVGFLSPGSQLMAVVKADAYGHGAVTVATTVLAAGATWLGV 73 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYS---KLMSC 118 +V EG++LR +A I +L H P Q I L P + S Q +S + Sbjct: 74 ATVTEGIQLREAGIKAPILILGATHTPEQIHAITSWQLEPTLCSPGQALIFSDLLNSIDY 133 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++DTG +RLG Q+A +F ++ + SH A AD P + + Q Sbjct: 134 NYELPVHIKLDTGMSRLGADWQQAGEFAQLVQGLPRLHIASVYSHFATADSPDTTIMEQQ 193 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 RF+ I+ + + LA+S+ L H+ + R G+++YG ++ + +Q Sbjct: 194 HGRFQQAIAQIRAMGIKIPSLHLANSAATLGNKELHYDMVRAGLAIYGLYPAAHQRNHLQ 253 Query: 234 --TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +ARI I+ G VSYG + R+ I V IGYADG P +LS Sbjct: 254 LRPALQVKARITHIKTISEGTGVSYGHKFIAPREMRIGVVGIGYADGVPRSLSNQMD--- 310 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 ++G V +G ITMD M DI+ + +E G+ + + G I DD A Sbjct: 311 --------VLVQGQRVKQIGMITMDQLMIDISSLVEVEEGEIVTLLGEQGEENITADDWA 362 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T +++++ R + Sbjct: 363 NQLNTISWEIICGFKDRLPRV 383 >gi|269121335|ref|YP_003309512.1| alanine racemase [Sebaldella termitidis ATCC 33386] gi|268615213|gb|ACZ09581.1| alanine racemase [Sebaldella termitidis ATCC 33386] Length = 356 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 166/364 (45%), Gaps = 17/364 (4%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I+L L++N + + ++G++ +K +AYG G ++ L + G++ V + E Sbjct: 4 WAEINLDNLRHNINILKTIAGDSMLLPAIKADAYGHGIAEVFNVLISEGIKWVGVATFNE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 KLR I V + + D N+ ++S+ ++ F + ++ L Sbjct: 64 AEKLRKLDKATNILVFGPVETEDMRKAIDMNIAFPLTSMDEIDFLN---ENNLAPRVHLA 120 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG R+G S + + + I SHL+ AD QLE F+ ++ Sbjct: 121 VDTGMGRIGFSRNSLDEVKRKTEENSKINVEGIFSHLSSADTSP-EYTKRQLEDFKKIVE 179 Query: 188 HYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILI 245 + I+ + +S G + + + RPGI LYGG K N S+ + V+ ++R+ I Sbjct: 180 KFPKIKYRHILNSFGSMQFSESKYDIIRPGIILYGGIKKENAFSYDFKPVMALKSRVSFI 239 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 +K +SY + + IA +IGYADG L+G G+ I Sbjct: 240 KKLENNSFISYNRKYEGRAGEKIATVSIGYADGIRRDLTG-----------KGEVVINNR 288 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 I G I MD M I + L + VGD ++ FG +I +++VA GT +Y++L IG R Sbjct: 289 RCRIAGTICMDQLMVSIPEDLEVNVGDTVEFFGENIHIEEVAEKCGTISYEILCGIGQRV 348 Query: 366 AKFY 369 + Y Sbjct: 349 TRIY 352 >gi|49474549|ref|YP_032591.1| alanine racemase [Bartonella quintana str. Toulouse] gi|49240053|emb|CAF26478.1| Alanine racemase [Bartonella quintana str. Toulouse] Length = 372 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 187/364 (51%), Gaps = 14/364 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID++A+ N+ ++ A +AVVK NAYGLG +KIAPALY AG + FFV +EE Sbjct: 19 ATIDVSAIVANYKTLAQRVAPAECSAVVKANAYGLGADKIAPALYRAGCRIFFVAQIEEA 78 Query: 69 VKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 ++L+ P +L G E+ I ++PV++S + + K P + Sbjct: 79 LQLKDILPSNVTLALLNGPPHATEEFIAQAGIVPVLNSWNAIENWQKLCQKKDKKFPAII 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E + ++ I+SHLA DD + N QL F+T++ Sbjct: 139 QIDTNMNRLGLDKKELQQLIKKPTIFEKAEIKYILSHLANGDDATHSSNYTQLAAFKTVL 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + AS A+S GI LGP+++F L RPGI+LYG + + V+ EA++I R Sbjct: 199 TQLPTCRASFANSGGIFLGPDFYFDLVRPGIALYGIDPQGKHPTLFKPVLKLEAQVIQSR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V Y R S + +IGYADG+ LS G + G+ Sbjct: 259 SIEAGIPVGYEESFITRRPSTLITISIGYADGWLRILSN-----------KGTVYFNGHK 307 Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +PI+G+I+MD D T+ + GD++++ GP L V++ + T +++L +G+RY Sbjct: 308 LPIVGRISMDSMTVDATNLDKKPQSGDWVELIGPHQTLKKVSIDANTIPHEILTSLGSRY 367 Query: 366 AKFY 369 + Y Sbjct: 368 QRIY 371 >gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] Length = 823 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 17/370 (4%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I+L AL +N++ L + +VK AYG G +IA + G V Sbjct: 461 TTLEINLNALTHNYNFYKSRLKPETKVMVMVKAFAYGGGSVEIANHIQTMGADYLAVAFT 520 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +EGV LR + I VL + + V S + + Sbjct: 521 DEGVTLRKHGISLPIMVLNPMEESIDLCHQYELEPVVYSPAFFKMVSNYCQAHDSKLSIH 580 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184 L +DTG +RLG + + + +++ + +HL AD+ + QL+ F+ Sbjct: 581 LDMDTGMHRLGFEEKHLEELGLLLEAETRLRIASVYTHLVGADEEIHKDYSLRQLKLFKK 640 Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + +S+GI+ P++ + R GI LYG + ++++ T + Sbjct: 641 MKGKLEHLLPSSTLFHALNSAGIVAFPDFQMHMVRLGIGLYGVEVTGKHASSLRSISTLK 700 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I I+ GE V Y + L IA ++GYADGY S G Sbjct: 701 TTISQIKTLEPGETVGYSRKGSLPEGGKIATLSLGYADGYDRRFSNG----------KGY 750 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I+G PI+G I MDM M D+TD ++ G+ I+G I L ++A T Y+LL Sbjct: 751 VIIQGKKAPIIGNICMDMCMVDVTDIEDVKAGNEAIIYGEGISLKELADRIETIPYELLT 810 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 811 NISARVKRIY 820 >gi|296119282|ref|ZP_06837850.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306] gi|295967674|gb|EFG80931.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306] Length = 366 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 22/368 (5%) Query: 10 KIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +I+L A+ +N H + L + R VVK +AYG G EK+AP + AG +V+E Sbjct: 7 RINLDAISHNVHKLKELVGPDVRLMCVVKADAYGHGVEKVAPVMLKAGADVLGCATVDEA 66 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 V LR A + D ++ VP L L+ V A++V Sbjct: 67 VALRSMGIDAPLVAWMWEPEQDL---SDALSSNIVIGVPSLQHAQVLVDIEVPVKVAIKV 123 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG +R G+ + + + +++ ++SHLACAD+P + VQ E FR I+ Sbjct: 124 ETGMHRNGVDRAQWAEVFALLNDAPHIEVTGLMSHLACADEPDNPHTDVQAEEFRAAIAQ 183 Query: 189 YK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + G+E LA+S L P+ HF R G++ YG H +Q +T A II Sbjct: 184 AREAGLECPINHLANSPATLTRPDLHFDQVRVGLACYGLEPVAGLDHELQPAMTWAANII 243 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ GE YG D +AV +GYADG P ++ G + I Sbjct: 244 NVKPIKKGESSCYGLTWTAPADGYLAVLPVGYADGLPRSIQGSL-----------QVTIG 292 Query: 304 GYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRI 361 G P +G+++MD + D+ D+ + D IFG ++A A+GT NY+++ R Sbjct: 293 GKSYPHVGRVSMDQIVIDLGDNPFGVRADDEAIIFGEGGHSATELADAAGTINYEIICRP 352 Query: 362 GTRYAKFY 369 R + Y Sbjct: 353 TGRTKRIY 360 >gi|281500991|pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella Henselae With Covalently Bound Pyridoxal Phosphate gi|281500992|pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella Henselae With Covalently Bound Pyridoxal Phosphate Length = 376 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 180/364 (49%), Gaps = 14/364 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ A+ N+ ++ +AVV NAYGLG KIAPALY AG + FFV +EE Sbjct: 23 ATIDVRAIVANYRTLAQHVAPTECSAVVXANAYGLGAHKIAPALYQAGCRTFFVAQIEEA 82 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHPYAL 126 ++L+ P+ + L P + + + I S + + P + Sbjct: 83 LQLKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAII 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVDT +RLGL +E N + ++ I+SHLA +D S N+ QL F+ ++ Sbjct: 143 QVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVL 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + S A+S GI LG +++F L RPGI+LYG P++ VV EA+++ R Sbjct: 203 AQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQSR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V Y R S +A +IGYADG+P LS G + G+ Sbjct: 263 FIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGHK 311 Query: 307 VPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +PI+G I+MD + D TD + GD++++ GP L+ V+ + T +++L +G RY Sbjct: 312 LPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKRY 371 Query: 366 AKFY 369 + Y Sbjct: 372 KRIY 375 >gi|269792742|ref|YP_003317646.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100377|gb|ACZ19364.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 380 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 155/378 (41%), Gaps = 24/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+++ L A+++N + + G A+ VVK NAYGLG ++ AL GV F V Sbjct: 3 RPTRMEVSLRAVRHNLDQIRSYVGGRAQVMGVVKANAYGLGARRVVEALRAQGVVRFAVA 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 + +E V+LR + + VL P + ++ + S+ ++ G Sbjct: 63 TPDEAVQLREWGVGEPVLVLGQCLPSAAGEMVAMDVTCAVGSLELARALSAEAERQGRQV 122 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG R+G E + + + I +H A AD+ QL RF Sbjct: 123 KVHIKVDTGMGRIGFLPGELEAAMDQILSMRHLDVEGIFTHFATADEARLDHAEEQLRRF 182 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + +S+ + P+ H RPGI LYG P+ V Sbjct: 183 GDALDRMRCRGVRFRLRHACNSAATIRMPHGHLDAVRPGIILYGMRPSPLCPMPLNLEVP 242 Query: 238 AE--ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 E + +R+ +SYG + + IAV IGY DGY LSG Sbjct: 243 FEVNTAVAAVRELPPMWGISYGMRYVTRGNERIAVLPIGYRDGYARALSG---------- 292 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + I+G P++G I MD M D+TD S++VGD + + G I ++ A Sbjct: 293 -KAQVLIRGRRFPVVGTICMDQCMVDVTDCPSVQVGDPVVLLGRQGDQAITPEEFASWLN 351 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++ R + Y Sbjct: 352 TIVYEVPGMFSERVPRVY 369 >gi|295092961|emb|CBK82052.1| alanine racemase [Coprococcus sp. ART55/1] Length = 389 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 173/386 (44%), Gaps = 29/386 (7%) Query: 1 MHSNEFLR--LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M ++ F R I+L +++N +M L G+ + AV+K +AYG G ++A AL + V Sbjct: 1 MDNSNFNRVQAVINLDNIRDNITAMKRLIDGDKKMLAVIKADAYGHGAVEVAEALDDL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 F V ++E ++LR I +L P ++I ++ P + V S L Sbjct: 60 DFFAVAFIDEALELRRANIDKPILILGYTDPSDYELILRYDVRPAMYEVDDAQKLSDLAV 119 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 S ++VDTG R+G + E + ++ I +H A AD+ Sbjct: 120 SMNTKAKIHIKVDTGMGRIGFTCDEDGVKNIEKISQMPGIEIEGIFTHYAKADELDKTAA 179 Query: 176 SVQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 + QLE+FR + S + + + +S+GI+ N F + R GI YG Sbjct: 180 NGQLEKFRWINSQLEALGIHIPVRHISNSAGIMEMDNSDFDMVRSGIVTYGLYPSDEVDK 239 Query: 231 PM---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + + + +++I ++ AG + YG D +A + GYADGYP S + Sbjct: 240 NIAALKPAMRLMSKVIFVKDVKAGTGIGYGWSYIADHDIKVATVSAGYADGYPRAQSNI- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 G+ I G PI+G++ MD M D++ ++V D + + G D + + Sbjct: 299 ----------GRVIIHGEYAPIIGRVCMDQFMVDVSHIDGVKVRDDVTLIGQDGDREVTV 348 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 ++VA + + NY+L+ I R + Y Sbjct: 349 EEVAAPANSFNYELVCNISRRVPRTY 374 >gi|218281653|ref|ZP_03488054.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989] gi|218217260|gb|EEC90798.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989] Length = 383 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 161/383 (42%), Gaps = 30/383 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +ID A+++N + L N + +VK NAYGLG A AL GV F V+S Sbjct: 6 SRAWTEIDYDAIRHNVKEVKKLVKNTKIMGIVKANAYGLGDVACAKALQKCGVDYFGVSS 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123 ++E + LR Q I +L + + N++ + S+ + V Sbjct: 66 IDEALNLRNAGIQDNILILGYTPSMHFHYLHEQNIVQSLVSIEYARELNAYAKENDVKIR 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA------CADDPSSHVNSV 177 +VDTG R G+ QE + + + + + + C D+ + Sbjct: 126 CHCKVDTGMCRTGIVYQEQDKHIEDIYEEYRLENLCVEGIFSHFPVSDCLDEDCTEFTKK 185 Query: 178 QLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDK----INK 228 Q++ F +I +GI+ L +S GIL P ++ RPG+ G T I Sbjct: 186 QIQLFDEVIDLLKSQGIDPGIRHLQNSYGILNYPELEYEYCRPGLLYMGVTSDDHIKIKT 245 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +++ A + L++ G+ VSYG + + +A +IGYADG P LS Sbjct: 246 NPDFIPIMSMYANVSLVKWIYPGQSVSYGRHFIAEKPTKVATMSIGYADGLPRLLSNQ-- 303 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G + + G ++G + MD M D+T+ ++ GD + I G + +D Sbjct: 304 --------GFEVLVHGQRCKLIGNLCMDQCMIDVTEVEDVKEGDVVCIVGHQGNEVVTVD 355 Query: 345 DVALASGTTNYDLLVRIGTRYAK 367 ++ + T N + L I +R + Sbjct: 356 QISRMAKTINNETLTSISSRVPR 378 >gi|188583600|ref|YP_001927045.1| alanine racemase [Methylobacterium populi BJ001] gi|179347098|gb|ACB82510.1| alanine racemase [Methylobacterium populi BJ001] Length = 363 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 14/363 (3%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL +DL A+ NW ++ A + A AVVK +AYG G +APAL+ AG + FFV + Sbjct: 13 ARLTVDLAAIAANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLS 72 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG+ R P+A I+VL G+ PG + L PV+ + + P AL Sbjct: 73 EGIAARKILPEAAIYVLNGLVPGHAEAFRAHGLRPVLGDR--GELLEWAAATDGAAPAAL 130 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTG NRLGL ++EAL + + G ++SHL A+ P +N+ Q E F + Sbjct: 131 HVDTGMNRLGLRVEEALALAGDPLIARAGIDL-VMSHLVSAERPDDPLNAGQAEAFARVR 189 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + ASLA+SSG L L RPG +L+GG + + +PM+ VV EA I+ +R Sbjct: 190 DAFPPLRASLANSSGTCLAARARHDLLRPGYALFGGNPEPGQRNPMRPVVRLEATILQLR 249 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE Y G+ + +A ++GYADGYP + S G + G Sbjct: 250 AVEAGESCGYNGRWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVP 298 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 PI+G I+MD+ + D+TD+ G + G + +D V A+GT Y++L +G+RY Sbjct: 299 CPIVGLISMDLIILDVTDASEARRGATATLIGDSLDIDTVGQAAGTIGYEILTGLGSRYV 358 Query: 367 KFY 369 + Y Sbjct: 359 RSY 361 >gi|171779289|ref|ZP_02920260.1| hypothetical protein STRINF_01137 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282345|gb|EDT47772.1| hypothetical protein STRINF_01137 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 368 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 172/382 (45%), Gaps = 27/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + R IDL A+ +N ++ A + AVVK NAYG G +K+A A+++ V Sbjct: 1 MISSLHRPTRALIDLGAICDNIETVKANIPEGKKAFAVVKANAYGHGAKKVAQAVHHL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++V+E ++LR + I +L I P + + D ++ ++S L ++ Sbjct: 60 DGFCVSNVDEALELREAGIEETILILGVIMPNEVALARDYDITLTVASQEWLDLANEQDI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ E + + K + I +H A AD+ + + Sbjct: 120 SLKGVNVHLKVDSGMGRIGVRSLEEAESLMANLKKAGANVEGIFTHFATADEADNTKFNE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F ++++ A + +S+ + F + R GI +YG I +P+ Sbjct: 180 QLAFFTNIVNNLSEKPALVHASNSATSIWHSETIFNIVRLGIVMYGLNPSGTDIALPYPI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++ AG V YG ++ IA IGYADG+ L G Sbjct: 240 KPALSLESALVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G+++MD + + +G + + G + I D+A Sbjct: 295 -------VLVNGQFCEIVGRVSMDQITIRLPEKFP--IGTKVTLIGQEGDKAISATDLAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 GT NY++L + R +FY+ Sbjct: 346 KCGTINYEVLCLLSDRIPRFYS 367 >gi|15891641|ref|NP_357313.1| alanine racemase [Agrobacterium tumefaciens str. C58] gi|20137303|sp|P58737|ALR2_AGRT5 RecName: Full=Alanine racemase, catabolic gi|15160087|gb|AAK90098.1| alanine racemase [Agrobacterium tumefaciens str. C58] Length = 388 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ ++ ++TAAVVK +AYGLG + ++ L+ AG ++FFV ++E Sbjct: 18 LTIDLGALRDNYLTLAGMAPASQTAAVVKADAYGLGADVVSQTLFEAGCRNFFVAHIDEA 77 Query: 69 VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 + LR + +ARIFVL G+ PG E + PV++S+ Q+ + + G + A+ Sbjct: 78 LALRLRLSAKARIFVLNGLQPGNETSCAAMAITPVLNSLEQIAQWSAHARELGKTLTAAV 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG RLGLS +E + +++ ++SHLACAD+P N+ QL R Sbjct: 138 QIDTGMCRLGLSPEELEILSAKQQLLDGIEIAFVMSHLACADEPDHVSNAAQLAVMRKAA 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + ++S GI LG +YH L RPGI+LYGG +PM+ VV + +I R Sbjct: 198 TAFPETPVCFSNSGGIFLGNDYHNALLRPGIALYGGAPSAAGPNPMKPVVRLDVAVIQTR 257 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG LV YGG + + +A A GYADG P +LS G + G Sbjct: 258 TVPAGSLVGYGGSFTASVPTRLATIAAGYADGLPRSLSNR-----------GAAWYNGVR 306 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI G+++MD + DI+ + G +Q+ GPD L+D+A +GT Y++L +G R Sbjct: 307 LPIAGRVSMDSIILDISALPEGTLTQGSLVQMIGPDQTLEDIAEDAGTIAYEILTGLGRR 366 Query: 365 YAKFY 369 Y + Y Sbjct: 367 YRRSY 371 >gi|326202147|ref|ZP_08192017.1| alanine racemase [Clostridium papyrosolvens DSM 2782] gi|325987942|gb|EGD48768.1| alanine racemase [Clostridium papyrosolvens DSM 2782] Length = 719 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 115/381 (30%), Positives = 181/381 (47%), Gaps = 31/381 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +ID+ LK+N + + L + + AVVK NAYG G +I+ +L AGV F V + Sbjct: 349 RAWAEIDMDRLKHNVNQLKLLLPHDCQLMAVVKSNAYGHGDIEISKSLNKAGVYAFAVAT 408 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + EG++LR + I +L HP + ++ +L +V + L S G+ Sbjct: 409 LSEGIELRNNKIKGEILILGYTHPDEAPLLVRYDLTQ---TVVDYEYAEILDSTGLKIKV 465 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLER 181 +++DTG +RLG + +AL ++N K + +HL+ AD Q+++ Sbjct: 466 HIKIDTGMHRLGET-NDALTNLDRTYNCKNLIVGGTYTHLSSADSVEPSNIIFTKEQIKK 524 Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 F + ++ + + + SS GIL P R GI+LYG K N+ ++ Sbjct: 525 FYSTLNYLKSHNRNPSKIHIQSSYGILNYPELDCDYARVGIALYGVLSKENEKTKIRAAL 584 Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V++ +ARI+L ++ GE V YG + + IAV IGYADG P +LS Sbjct: 585 EPVLSLKARIVLTKEIQEGESVGYGRSFIAVKRTKIAVLCIGYADGIPRSLS-------- 636 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G IKG PI+G I MD DI+D ++ GD + G D I + VA Sbjct: 637 --CGKGYVLIKGKKAPIIGNICMDQLTVDISDIPDVQQGDIATLIGDDGNEAITAEQVAS 694 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +GT +LL R+G R + Y Sbjct: 695 LAGTITNELLSRLGNRIERVY 715 >gi|19076018|ref|NP_588518.1| alanine racemase Alr1 [Schizosaccharomyces pombe 972h-] gi|12229634|sp|O59828|ALR1_SCHPO RecName: Full=Alanine racemase, catabolic gi|3136037|emb|CAA19068.1| alanine racemase Alr1 [Schizosaccharomyces pombe] Length = 375 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 173/379 (45%), Gaps = 31/379 (8%) Query: 11 IDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNA--GVQDFFVTS 64 IDL A+ +N++ + + + A+VK NAYG G ++A L + F V+S Sbjct: 8 IDLHAIAHNYNVAKQMMLQKNPSGHVLAIVKANAYGHGAVQVARFLLKHCSSIDGFGVSS 67 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE ++LR +I +L G ++++ D N +I S Q+ + K Sbjct: 68 IEEALELRHGGIYNKIVLLEGFFTEEDELKLIDDYNFSIIIHSEDQVNSFIKY-PFNRPV 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLER 181 L++D+G NRLG + + + F + N K I+H A AD + Q + Sbjct: 127 EIWLKLDSGMNRLGFTPSQFMKFYNLLSNNKNVSNIGKITHFAFADMLENPEHTLKQWDI 186 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--------PMQ 233 F ++H G ++ S+ + R GI LYG + ++K+ ++ Sbjct: 187 FEKSVAHLPGPLSAGGSAIILGWLNTVCTDWLRAGIMLYGISPFLSKNKDSKTPESVNIK 246 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + II ++ G+ + YGG+ TRD + V A+GY DG+P Sbjct: 247 PAMKLVSTIISVKHVDKGQPIGYGGRYVATRDMKLGVVAMGYGDGFPRQ----------- 295 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALAS-G 351 V G + G PI+G+++MDM D++D ++ GD + +G P++ + D+A Sbjct: 296 VKDGCPVLVNGVKAPIVGRVSMDMLTVDLSDIPDVKPGDEVIFWGTPELTVADIAKYCSD 355 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T+ Y+L+ ++ R YT Sbjct: 356 TSPYELVTKLTRRVPLQYT 374 >gi|294788699|ref|ZP_06753940.1| alanine racemase [Simonsiella muelleri ATCC 29453] gi|294483181|gb|EFG30867.1| alanine racemase [Simonsiella muelleri ATCC 29453] Length = 352 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 16/360 (4%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +I L L+ N+ + + G + AV+K NAYG G + A AL++ F V +EE + Sbjct: 7 EIRLNYLRENYQILKKIHGK-KLLAVIKANAYGHGAVQCAQALHDI-ADGFAVAFLEEAI 64 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 +LR + I +L G +E + + + + L++D Sbjct: 65 ELREHGITRPIVLLEGTFDAKEYDLVEQYDLWTVIHQQSQLELFLAHDWRKPTTVWLKMD 124 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 +G +R G + + ++H +CAD+ + +Q+E F Sbjct: 125 SGMHRTGFFPHQFAAAYTALSQSDKIANIVKMTHFSCADEAERSMTDMQIESFDLGCHGL 184 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249 G E S+A+S+ ++ P R G++LYG S ++ V+ +RI R Sbjct: 185 TGEE-SIANSAAMIRFPEARRDWGRAGLALYGVDPTGEFSGSLKPVMRLSSRIFAERILQ 243 Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309 E + YG R + + + A GYADGYP +KG I Sbjct: 244 PHEPIGYGANFYTKRSTRVGLVACGYADGYPRNAPNE-----------TPILVKGLRTKI 292 Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +G+I+MDM D+ DS VGD +++FG I + ++A A+G Y++L I R + Y Sbjct: 293 IGRISMDMLTVDLNDSHE-GVGDEVELFGDLINVQEIADAAGMIPYEILCNI-KRAKRVY 350 >gi|291542251|emb|CBL15361.1| alanine racemase [Ruminococcus bromii L2-63] Length = 392 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 158/390 (40%), Gaps = 32/390 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ + +I L A+++N++ + ++ + + V+K + YG G +++ G Sbjct: 1 MNMVKRTWAEISLNAIEHNYNVIRNKVADDTKVCCVIKADGYGHGAVELSQIYEKLGADF 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 F V++++EG+++R + I +L + + + + ++ + S+ K + Sbjct: 61 FAVSNIDEGIEIRKSGSKLPIVILGYTPVSEAENLAEYDISQAVFSLEYAKELSEKCVEE 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI------ISHLACADDPSS 172 ++VD+G +R+G QE ++ +H +D+ + Sbjct: 121 DCICKMHIKVDSGMSRIGFMCQEFPRDEYSIEEICEACCLPNLEVEGLFTHFCVSDEDAE 180 Query: 173 --HVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225 + Q E F + K ++S I P + R GI LYG Sbjct: 181 GREFTNKQYENFIHVRDSLKKRGVDISVVHCSNSGAIEDYPETCCDMVRAGIILYGLAPS 240 Query: 226 INKS--HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + + +T + + +++ G +SYG R IA IGYADG+ Sbjct: 241 SKLADRLDLVPAMTLKTVVAFVKEVQKGATISYGRTFTADRKMKIATVPIGYADGFIRQ- 299 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---- 339 G + G I+G+I MD TM D+TD ++ GD + +FG Sbjct: 300 ----------NAKDGYMMVNGKKAKIVGRICMDQTMLDVTDIEDVKTGDEVVVFGTGENG 349 Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D +A +GT NY+ + +G R + Y Sbjct: 350 EPTADSLAENTGTINYETVCLVGKRVPRIY 379 >gi|255527458|ref|ZP_05394329.1| alanine racemase [Clostridium carboxidivorans P7] gi|296186051|ref|ZP_06854456.1| alanine racemase [Clostridium carboxidivorans P7] gi|255508838|gb|EET85207.1| alanine racemase [Clostridium carboxidivorans P7] gi|296049319|gb|EFG88748.1| alanine racemase [Clostridium carboxidivorans P7] Length = 394 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 33/387 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I++ + +N + ++ + +VVK +AYG G ++AP L G V Sbjct: 6 NPAWAEINIDNVIHNIKEIRRVAKSKEIISVVKADAYGHGAVELAPILLENGADRLAVAL 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL--------- 115 + E ++LR +A I + K I N VI++ ++T S Sbjct: 66 LSEALQLRKSGIKAPILIFGYTPLKYGKDIIHNNAEDVINNELEVTVLSYDYAKKLSKVA 125 Query: 116 MSCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + + VDTG R+G ++++ + + + SH + +D+ S Sbjct: 126 KKLNKNVKIHINVDTGMGRIGFLPTTQSVEDIYKISQLPNIIIEGLYSHFSTSDEKSKSY 185 Query: 175 NSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 + Q +R+ + + +A+S+ ++ P H RPGI+ YG + + Sbjct: 186 ANKQFKRYLDFYERLEKKDIRINIKHIANSAALIDLPYTHLDAVRPGIANYGYYPSEDVN 245 Query: 230 HPMQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 H + +T + ++ R AG + YG + R S I IGYADGY LS + Sbjct: 246 HDIIKLKPTMTLKCNVVASRTLKAGSYIGYGRTFRTERASRIVTLGIGYADGYDRRLSNV 305 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 G+ +KG PI+G+I MDM M D+TD I+V D + + G + Sbjct: 306 -----------GEIVVKGKAAPIVGRICMDMCMSDVTDIGDIKVSDEVILMGESLSEKTT 354 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 ++++A +GT ++ I R + Y Sbjct: 355 VENIAKLTGTIPQEVTSNISKRVPRHY 381 >gi|39995713|ref|NP_951664.1| alanine racemase [Geobacter sulfurreducens PCA] gi|81832115|sp|Q74FK2|ALR_GEOSL RecName: Full=Alanine racemase gi|39982477|gb|AAR33937.1| alanine racemase [Geobacter sulfurreducens PCA] gi|298504725|gb|ADI83448.1| alanine racemase [Geobacter sulfurreducens KN400] Length = 382 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 165/386 (42%), Gaps = 29/386 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S ++DL AL++N+ + + AVVK +AYG G IA L GV Sbjct: 1 MDS-RPTIAEVDLAALRHNYDLVVRTIPRGCGILAVVKADAYGHGFMDIARELETLGVTA 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F V + EG++LR + +L G++PGQE+ NL + S+ Q Sbjct: 60 FGVAFLAEGIQLRKSGIDRPVLILGGVYPGQERKCVGFNLSTALFSLEQARVLDDAAGRL 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VN 175 ++DTG RLG+ +EA F K L IISH A AD+ + Sbjct: 120 YRRARVHAKIDTGMGRLGIPHEEASAFFSALRELKHLDLEGIISHFASADELDEDGRRYS 179 Query: 176 SVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 +Q RF + ++ +A+S+ L RPGI LYG + Sbjct: 180 DLQASRFAAAVAAARHEGFEPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALPSGDFEG 239 Query: 231 PM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 M + ++ + I +++ G +SY + L+A +GYADGY +L+ Sbjct: 240 KMALKPIMRLRSSIAMLKWVEPGTSISYARRFTAPDRRLVASIPVGYADGYSRSLTNR-- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-----KL 343 G+ ++G P++G + MD M D+T + VGD + + G D + Sbjct: 298 ---------GEVVVRGRRAPVVGTVCMDWIMADVTHVSGVTVGDEVTLLGCDQEGNCVRA 348 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +++A +GT Y++ I R + Y Sbjct: 349 EELAEWAGTIPYEIFCGISKRVPRVY 374 >gi|13473409|ref|NP_104976.1| alanine racemase [Mesorhizobium loti MAFF303099] gi|20137427|sp|Q98F05|ALR2_RHILO RecName: Full=Alanine racemase, catabolic gi|14024158|dbj|BAB50762.1| alanine racemase [Mesorhizobium loti MAFF303099] Length = 381 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 179/365 (49%), Gaps = 17/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A++ N+ + AL G A VVK N YGLG K+A AL G FFV + EG Sbjct: 27 LTIDLGAIRENYRRLKALLGGVHCAGVVKANGYGLGAAKVAAALTREGCDIFFVALLAEG 86 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126 + LR I+VL G+ PG E L VI+S Q + + + G P A+ Sbjct: 87 IALRKAVGTGPDIYVLNGLPPGSEPEAVAAGLCAVINSGAQLKAWRAAVHDAGRRLPAAI 146 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVD+G +RLG++ E +S + ++SHLACAD+P N Q F L Sbjct: 147 QVDSGMSRLGMAPAEVEALAGDSSAFDGIDIKYVMSHLACADEPRHPANEQQRLAFERLR 206 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + ASLA+SSGI LGP+YH L RPG +LYG + +PM VV +A++ R Sbjct: 207 AMLPRAPASLANSSGIFLGPSYHHDLARPGAALYGINPTPGEPNPMLPVVWLQAKVAQTR 266 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + G + YG +A + GYADG+ + +G Sbjct: 267 RIEKGAGIGYGHSYHADGPLSLATISFGYADGWLRR-------------SASAAWFEGVR 313 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P LG+++MD + DI+ + GD +++ GP +DD A +GT Y++L +G R Sbjct: 314 LPFLGRVSMDSIILDISALPPGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILASLGPR 373 Query: 365 YAKFY 369 + + Y Sbjct: 374 FHRHY 378 >gi|227355801|ref|ZP_03840194.1| alanine racemase, catabolic [Proteus mirabilis ATCC 29906] gi|227164120|gb|EEI49017.1| alanine racemase, catabolic [Proteus mirabilis ATCC 29906] Length = 370 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 21/366 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ I+L AL +N + + + ++ +VVK +AYG G + PAL + F + Sbjct: 2 SRPAKISINLDALSHNLSVIKSKAQGSKVWSVVKADAYGHGLSCVWPALSH--TDGFALI 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++ + LR I +L G + + + + + + Sbjct: 60 ELDKAIMLREQGWVGPILLLEGFFKPDDVYLLERYSLTTVVHADWQFEAIEQAQLERPIN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++ + + +SH A AD + Q+ Sbjct: 120 IYLKLNSGMNRLGYRPEDYQQAIQRAKRITNIGSIVQMSHFANADSGLNMATQKQII--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 S + LA+S+ IL P H RPGI LYG + +Q V+T Sbjct: 177 -DSSMVNDLPRCLANSAAILFEPQTHHSWVRPGIILYGVSPSGVWQDIADFDLQPVMTFN 235 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + ++ I+ GE + YG + RD IAV A GYADGYP G Sbjct: 236 SEVLAIQSVKKGEQIGYGSRYTAQRDMRIAVVACGYADGYPRHA-----------PDGTP 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +KG+ ++G+I+MDM D+TD +E G ++++G + +D+VALA GT Y+LL Sbjct: 285 VIVKGHKTQLVGRISMDMLTIDVTDLPDVEHGSPVELWGNQLPVDEVALACGTIGYELLC 344 Query: 360 RIGTRY 365 I R Sbjct: 345 AIAPRV 350 >gi|172058812|ref|YP_001815272.1| alanine racemase [Exiguobacterium sibiricum 255-15] gi|171991333|gb|ACB62255.1| alanine racemase [Exiguobacterium sibiricum 255-15] Length = 357 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 151/369 (40%), Gaps = 19/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ID A+ +N + A G+ AVVK + YG G +A G V Sbjct: 3 RPTWIEIDREAIAHNVREIKARIGHQTMMAVVKADGYGHGAVTVAEIALANGADLLAVAL 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR QA I +L + P I + ++ + S L + ++ Sbjct: 63 LEEAIELREAGIQAPILMLETLLPEHAPIASNYDVAVPVFSADWLREAKQHLTDVDHLRL 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VD+G RLGL E LD + + +L I +H A AD+ +S + Q F Sbjct: 123 HIKVDSGMGRLGLQTPEELDAVLQELDSDVMELEGIYTHFATADELNSRLFDEQQTVFLH 182 Query: 185 LISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VVTAE 239 + I S+ I L F + R GI+LYG + T + Sbjct: 183 FVERVPDIRYIHAANSAGAIRLIGQDPFNVVRIGIALYGAMPSDEMIPYYEFLRPAFTLK 242 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R++ +++ G+ +SYG D I IGYADG+ G Sbjct: 243 SRLMQVKQVEPGQTISYGATYTAPTDEWIGTVPIGYADGWSRKFQGYSL----------- 291 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + GY I+G++ MD M + + + G + + G + +D+ A GT NY++L Sbjct: 292 -LVDGYPCEIVGRVCMDRLMIRLPRNYPV--GTEVTLIGQGVPIDEAAHWLGTINYEVLC 348 Query: 360 RIGTRYAKF 368 + R + Sbjct: 349 QFSKRVPRI 357 >gi|25027149|ref|NP_737203.1| alanine racemase [Corynebacterium efficiens YS-314] gi|259506716|ref|ZP_05749618.1| D-alanine racemase [Corynebacterium efficiens YS-314] gi|81846897|sp|Q8FS13|ALR_COREF RecName: Full=Alanine racemase gi|23492430|dbj|BAC17403.1| alanine racemase [Corynebacterium efficiens YS-314] gi|259165699|gb|EEW50253.1| D-alanine racemase [Corynebacterium efficiens YS-314] Length = 367 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 154/373 (41%), Gaps = 18/373 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +IDL A+ +N + G A+ AVVK + Y G +++AP + G F V + Sbjct: 2 NLLTTRIDLDAIAHNTRLLKNRVGAAKLMAVVKADGYNHGMDRVAPVMAANGADAFGVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR I + + + S + Sbjct: 62 IAEALALRATGITTPILCWIWSPEQDWAAAVEAGIDLAVISPRHARVLVDAPPTSRAIRV 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++VDT +R G+ Q+ + +++ + +HL+CAD+P + Q E FR Sbjct: 122 SVKVDTALHRSGVDEQDWDAVFTLLRDCGHIEVTGLFTHLSCADEPGNPETDHQAETFRR 181 Query: 185 LISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + + E L +S L P+ H + RPG++LYG H ++ +T Sbjct: 182 AIDRARALGLEVPENHLCNSPATLTRPDLHMDMVRPGVALYGLEPIPGLDHGLRPAMTWA 241 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I +++ GE SYG + D +AV GYADG P + Sbjct: 242 GAITVVKPIRKGEGTSYGLTWRAEADGFVAVVPAGYADGVPRAAQDHL-----------R 290 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF-GPDIKLDDVALASGTTNYDL 357 + G+ P +G++ MD + + D+ + GD IF G + ++A A T NY++ Sbjct: 291 VHVNGHDYPQVGRVCMDQFVIFLGDNPHGVTAGDEAVIFGGTGMSATELADALATINYEV 350 Query: 358 LVRIGTRYAKFYT 370 + R R + YT Sbjct: 351 ICRPTGRTVRDYT 363 >gi|150020918|ref|YP_001306272.1| alanine racemase [Thermosipho melanesiensis BI429] gi|149793439|gb|ABR30887.1| alanine racemase [Thermosipho melanesiensis BI429] Length = 364 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 157/374 (41%), Gaps = 27/374 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +IDL +N ++ V+K + YG G +A A G+ F V Sbjct: 5 SRRTFAEIDLKNYIHNLKYFEEKCAPSKVMPVIKADGYGHGAIYLAKAAEKYGIDYFAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR ++ I V I ++ + N+ + S Q + Sbjct: 65 FLEEALTLRKNGIKSDILVFNYIDKDFVELAVENNITITMLSWEQ---FELYKKLKKKPK 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLE 180 + VDTG NR+G+ ++A F +N+ + + +H A AD Q + Sbjct: 122 VHINVDTGMNRVGIKPKDAKKF-YNALIENEFIVEGAYTHFAVADSTKKEDILFTKKQYK 180 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAE 239 F L + + +S+G +LG R GI+ YG K +++V+T + Sbjct: 181 LFSEL--NLNVKIKHVNNSAGAILGIVPIENYVRIGIASYGLMPSNEVKDENLKSVLTWK 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ GE +SYG + +A +GYADGY LS L G+ Sbjct: 239 SIVSHVKHIEPGESISYGRTFRAKEKMKVATIPVGYADGYWRHLSNL-----------GE 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G ILG++ MD + + D ++VGD + + G I +++A G+ NY Sbjct: 288 VLIRGRRRKILGRVCMDQFVVEADD--EVQVGDEVVLIGSQGNEKITAEEIAQKVGSINY 345 Query: 356 DLLVRIGTRYAKFY 369 ++ RI +R + Y Sbjct: 346 EVTCRISSRVPRIY 359 >gi|297562974|ref|YP_003681948.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847422|gb|ADH69442.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 376 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 152/382 (39%), Gaps = 28/382 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + F ++DL A+ +N + +G VVK + YG G A AL G Sbjct: 2 SHFAHARVDLDAISHNARVLRGFAGGTPLMGVVKADGYGHGMLPAARALIAGGATWLGTA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSH 122 + E ++LR + + ++ +S T ++ G + Sbjct: 62 FIGEALELRRAGLTPPVLAWIIPPGEPVAEAVEADIDLGVSDRAVLDTVIAEARRIGRTA 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNSVQL 179 L+ DTG NR G+ + + + + + SH ACAD+P + QL Sbjct: 122 RVQLKADTGLNRGGVGPADWGALAEAAARAEDEGHLRVTGVWSHFACADEPGHPSVARQL 181 Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-HPMQ 233 RF + + +A+S+ +L P F L R GI+ YG + + ++ Sbjct: 182 SRFHEALETADKVGLTPEVRHIANSAALLTLPEARFDLVRGGIASYGLSPIPGLTGTGLR 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T +R+ L ++ G VSYG + R++ +A+ +GYADG P + Sbjct: 242 PAMTLRSRLALTKRVPEGSGVSYGHRYVTDRETTLALVPLGYADGVPRAATNR------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG------PDIKLDDVA 347 G + G + G + MD + D+ D +E G+Y +FG +D A Sbjct: 295 ----GPVLLGGRRRAVAGTVCMDQFVVDVGDDA-VEAGEYAVLFGNPEDHPDTPTAEDWA 349 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T Y+++ R+G R + Y Sbjct: 350 EILDTIPYEIVTRVGPRVPREY 371 >gi|254360577|ref|ZP_04976726.1| alanine racemase [Mannheimia haemolytica PHL213] gi|153091117|gb|EDN73122.1| alanine racemase [Mannheimia haemolytica PHL213] Length = 374 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ID AL++N + + + + A++K NAYG G A L + V F V Sbjct: 2 KPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLPAAGTLADM-VDGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120 + E ++++ +I ++ G + VI ++ QL ++ Sbjct: 61 LREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHNLEQLELLEQVAKEWQAEQ 120 Query: 121 -------------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 L++DTG +RLG+ ++ F N L +SH + A Sbjct: 121 QKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVERLKNCALVNSISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+ Q+ F Y+ + S+++SSGIL H+ RPGI ++G + Sbjct: 181 DELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVTAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G I G +VPI+G+++MDM D+ +VGD +G + ++D Sbjct: 299 ---------PEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKVGDKAIFWGEQLLIED 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAKHIGVISYELITKLTPRV 369 >gi|396388|gb|AAC43147.1| alanine racemase [Escherichia coli str. K-12 substr. MG1655] Length = 358 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 167/368 (45%), Gaps = 20/368 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + + ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLREXAPASKMVAVVKANAYGHGLLETARTLPD--ADAFXVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGY + G Sbjct: 241 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGY------------XAAPSGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 289 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 348 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 349 TSRVAMKY 356 >gi|149369298|ref|ZP_01889150.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [unidentified eubacterium SCB49] gi|149356725|gb|EDM45280.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [unidentified eubacterium SCB49] Length = 367 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 160/378 (42%), Gaps = 23/378 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M L+IDL AL+ N+H + L + + AVVK N YG IA L + Sbjct: 1 MSKVTETTLEIDLNALRQNYHFIKSKLKPSTKMLAVVKANGYGSDGVIIAKELSSLDCDY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V EGV LR + I VL+ P I D L P I S+ L + Sbjct: 61 FAVAYAGEGVALRDAGIKTPILVLHP-LPVNFDTIIDNKLEPSIYSLKMLRDFIAFADSK 119 Query: 120 --VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNS 176 ++P L+ +TG NRLG E + ++ I SHLA ++D + Sbjct: 120 NQKNYPIHLKFNTGLNRLGFIASEIETMLQHIAETSSVKICSIFSHLAASEDANETIFTQ 179 Query: 177 VQLERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q+++F+ + Y+ I +L ++SGIL P F + R GI +YG + Sbjct: 180 NQIDQFQHISEEITTQIGYQPIRHTL-NTSGILNFPEAQFDMVRCGIGIYGYGNDPKFDK 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + V++ + I I G+ + Y + + T A IG+ADG P +L Sbjct: 239 ELVPVLSLKTVISQIHHLREGDTIGYNRKGQATTALKTATLPIGHADGLPRSLG------ 292 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 FI G PI+G + MDM M +ITD GD + IF + +A Sbjct: 293 ----QGKASVFINGKAAPIIGNVCMDMIMVNITDI-ECNEGDEVIIFDKKHTAEMLAEQM 347 Query: 351 GTTNYDLLVRIGTRYAKF 368 + +Y+LL + +R + Sbjct: 348 NSISYELLTGLSSRIKRI 365 >gi|88703618|ref|ZP_01101334.1| alanine racemase [Congregibacter litoralis KT71] gi|88702332|gb|EAQ99435.1| alanine racemase [Congregibacter litoralis KT71] Length = 359 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 155/367 (42%), Gaps = 16/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I L++N + + +R A VK +AYG G + AL + V F V Sbjct: 3 RPTLARILTGNLRHNARRVREEAPRSRIMACVKADAYGHGITTASEALNDI-VDGFAVAC 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR + + +L G E + + + + + Sbjct: 62 ISEALALRDAGIKKPVLMLEGPQSPDEVPEAAHKDLTLCVNEWHQLEWLEKAGLSAPLAC 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +RLG S Q + K ++ +H + AD P + Q+ F Sbjct: 122 WLKIDTGMHRLGFSPQRTAEALQRLERKAKNPELVLCTHFSSADLPKDNGVEAQVRAFDE 181 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 ++ SLA+S+ IL P H RPG LYGG+ + + ++ + A Sbjct: 182 -VAATTAYAHSLANSAAILTIPESHRHWVRPGYMLYGGSPLADAAAATLNLKPAMEFVAE 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R GE V Y G+ + R S IA A GY DGYP G F Sbjct: 241 VISVRDVSVGERVGYRGRWEARRPSRIATVAAGYGDGYPRHA-----------PDGTPVF 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G + P+ G+++MDM D+T+ I VG ++G + +D+VA A+ T Y++L + Sbjct: 290 INGKVAPLAGRVSMDMITVDVTEHPDIAVGAKAVLWGGEPTVDEVATAADTIGYEILAGM 349 Query: 362 GTRYAKF 368 R + Sbjct: 350 PKRVPRV 356 >gi|126701086|ref|YP_001089983.1| alanine racemase [Clostridium difficile 630] gi|254977087|ref|ZP_05273559.1| alanine racemase [Clostridium difficile QCD-66c26] gi|255094415|ref|ZP_05323893.1| alanine racemase [Clostridium difficile CIP 107932] gi|255102672|ref|ZP_05331649.1| alanine racemase [Clostridium difficile QCD-63q42] gi|255316167|ref|ZP_05357750.1| alanine racemase [Clostridium difficile QCD-76w55] gi|255518828|ref|ZP_05386504.1| alanine racemase [Clostridium difficile QCD-97b34] gi|255652007|ref|ZP_05398909.1| alanine racemase [Clostridium difficile QCD-37x79] gi|260684982|ref|YP_003216267.1| alanine racemase [Clostridium difficile CD196] gi|260688640|ref|YP_003219774.1| alanine racemase [Clostridium difficile R20291] gi|306521749|ref|ZP_07408096.1| alanine racemase [Clostridium difficile QCD-32g58] gi|115252523|emb|CAJ70366.1| Alanine racemase 2 [Clostridium difficile] gi|260211145|emb|CBA66582.1| alanine racemase [Clostridium difficile CD196] gi|260214657|emb|CBE07277.1| alanine racemase [Clostridium difficile R20291] Length = 385 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 157/376 (41%), Gaps = 24/376 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I+L L+ N +++ L + + V+K +AYG G ++A L V V Sbjct: 7 PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVAR 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 EG++LR I L + + + S+ +++ G Sbjct: 67 TAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKAC 126 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL--E 180 +++D+G R+G +E++ + L + +H A AD+ S Q Sbjct: 127 VHVKIDSGMTRIGFQPNEESVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNY 186 Query: 181 RFRTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 +F + G++ +++S+ I+ P+ + R GI LYG + ++ Sbjct: 187 KFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRP 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + +++I I++ G +SYG + T IA IGYADG+ Sbjct: 247 AMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQKNP-------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTT 353 K IKG + ++G+I MD M I + I+VGD + +FG ++ + +A GT Sbjct: 299 ----KVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTI 354 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L I R + Y Sbjct: 355 NYEVLCMISRRVDRVY 370 >gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] Length = 821 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 152/370 (41%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLEALVDNLNYYRNKLKPDTKMVCMVKASAYGAGSFEIAKTLEDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR + I ++ K +FD L P + S L K + P Sbjct: 523 GADLRKAGINSSIIIMNPELTA-FKTMFDYKLEPEVYSFHLLEELIKAAGREGVSNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + SHL +D + Q+E F Sbjct: 582 IKIDTGMHRLGFAPEEIPALVDRLHRQSAVIPRSVFSHLVGSDAERFDSFTRRQIETFEN 641 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG NK V T + Sbjct: 642 ASAELQAGFSHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNKIL--HNVGTLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I A E V Y + LTR+S IA IGYADG L Sbjct: 700 TTILQIHDVPADETVGYSRKGILTRNSRIAAIPIGYADGLNRHLGNG----------NAY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG ++ + +A T Y++L Sbjct: 750 CLVNGQKTPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDELPVTILADKLNTIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRIY 818 >gi|261493404|ref|ZP_05989930.1| alanine racemase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496669|ref|ZP_05993049.1| alanine racemase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307872|gb|EEY09195.1| alanine racemase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311048|gb|EEY12225.1| alanine racemase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 374 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ID AL++N + + + + A++K NAYG G A L + V F V Sbjct: 2 KPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLPAAGTLADM-VDGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120 + E ++++ +I ++ G + VI ++ QL ++ Sbjct: 61 LREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHNLEQLELLEQVAKEWQAEQ 120 Query: 121 -------------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 L++DTG +RLG+ ++ F N L +SH + A Sbjct: 121 QKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVERLKNCALVNSISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+ Q+ F Y+ + S+++SSGIL H+ RPGI ++G + Sbjct: 181 DELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G I G +VPI+G+++MDM D+ +VGD +G + ++D Sbjct: 299 ---------PEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKVGDKAIFWGEQLLIED 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAKHIGVISYELITKLTPRV 369 >gi|167629789|ref|YP_001680288.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1] gi|167592529|gb|ABZ84277.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1] Length = 409 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 105/383 (27%), Positives = 160/383 (41%), Gaps = 30/383 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I L+A +N + + AR AV+K + YG G +A GV F V Sbjct: 37 RPAWAEIRLSAFAHNLQVLRRATQPQARLMAVIKADGYGHGAVALAWEAVRQGVDCFVVA 96 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E +KLR I +L P +++ + V + + G + Sbjct: 97 LLDEALKLRDAGITTPILILGYTPPAACYRVVAEDLSQAVYCRTVAEALSAAALRLGRTA 156 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+V+TG R+G E + + + SH A AD+P QLERF Sbjct: 157 RIHLKVETGMGRVGFQGDEGVREMLAIARLPGIAVEGVFSHFATADEPDKSFAREQLERF 216 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT--- 234 T+ + +A+S+ IL P H + RPGI+LYG + Sbjct: 217 LTITGRLQQAGLDIPMRHMANSAAILDLPESHLEGVRPGIALYGSSPFDGVRWDGAFLVP 276 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+T +ARII I++ AG +SYG + R + IA +GYADG TLSG + Sbjct: 277 VMTLKARIIFIKEVAAGTPISYGCTYRCPRRTRIATIPLGYADGIRRTLSGRIGAYKGE- 335 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--------KLDDV 346 P +G+I MD M DI D+ + GD + +FG ++D Sbjct: 336 ----------RYFPQVGRICMDQFMIDIGDA-ELAEGDEVTLFGRWQEGGTWRTAPVEDW 384 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A A GT +Y++L I R + Y Sbjct: 385 ARADGTISYEILSGISPRVPRHY 407 >gi|182682437|ref|YP_001830597.1| alanine racemase [Xylella fastidiosa M23] gi|182632547|gb|ACB93323.1| alanine racemase [Xylella fastidiosa M23] gi|307578720|gb|ADN62689.1| alanine racemase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 362 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ L G + AVVK +AYG G + A AL V F V Sbjct: 2 RPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR QA I +L G +E + + + + + Sbjct: 60 IEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGL +E D + + ++++HLA AD+ + + Q F Sbjct: 120 WLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFAH 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 AS+ +SSG+L + RPG+ LYG + S P++ V+ + Sbjct: 180 ASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYS 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG R + + V A+GYADGYP G Sbjct: 239 KLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPL 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y LL Sbjct: 288 LVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCG 347 Query: 361 IGTRYAKFY 369 + R ++Y Sbjct: 348 L-KRVRRYY 355 >gi|110640090|ref|YP_680300.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Cytophaga hutchinsonii ATCC 33406] gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406] Length = 842 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 161/370 (43%), Gaps = 19/370 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + + +VK +YG G +IA L GV V +E Sbjct: 483 LEINLDALIHNLNVYRSKLKPDTKIMCMVKAFSYGSGGFEIAQLLQYHGVDYLAVAYADE 542 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G +LR I V+ + I+ + V + ++ Sbjct: 543 GARLRENGITLPIMVMNPTLSSFDTILRYELEPEIYEPVLLKQIIEYAQAKQKHIGIHIK 602 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLI 186 +DTG RLG ++ + + + ++ + +HLA +D + QL F +I Sbjct: 603 IDTGMKRLGFEKKDVTEIAQQLKHTEFVKVYSVFTHLAASDSAEHDAFTAHQLNLFDEVI 662 Query: 187 SHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 S + A+SSGI+ H+ + R GI LYG + +Q + + Sbjct: 663 SLFQTTLNYSFIKHAANSSGIMRFKEAHYDMVRLGIGLYGVESAGLYQNELQAISVFKTH 722 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I I++ E V Y + ++T+ S IA A+GYADGY G+ Sbjct: 723 ISQIKEITTEESVGYSRKGRVTKPSKIATIAVGYADGYNRRFGNGI----------GEVL 772 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G PI+G + MDM+M D+TD+ + + GD + +FG + + D+A GT Y++L + Sbjct: 773 VNGVRCPIIGNVCMDMSMVDVTDAHAAQ-GDEVILFGHNPTVSDLAKRIGTIPYEILTSV 831 Query: 362 GTRYAKF-YT 370 G R + Y+ Sbjct: 832 GARVKRIFYS 841 >gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC 43184] gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii DSM 18315] gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC 43184] gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii DSM 18315] Length = 821 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N++ L + +VK YG G ++A L V +E Sbjct: 463 LEVNLDAVVHNFNYYRSKLKPETKMVCMVKAFGYGAGSYELAKTLQEHRCDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 G +LR + V+ + + V S + G++ +P + Sbjct: 523 GEELRKEGISIPLIVMNPEFSSFNVLFENQLEPEVYSFRLLDAMIKETERRGITSYPIHI 582 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG ++ + + + SHL +D QL+ F + Sbjct: 583 KIDTGMHRLGFQPEDVPEVCRRLKEQSGVVARSVFSHLVGSDSYIFDDFTKKQLDTFTRV 642 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + + +S+GI +Y + R GI LYG + K + T + Sbjct: 643 AAELEAGLEYKVIKHILNSAGIERFTDYQMDMVRLGIGLYGVSASGQKGLRNIS--TLKT 700 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AG+ + Y + RDS IA+ IGYADG S GG+ Sbjct: 701 TILQIQNVPAGDSIGYSRMSYVKRDSRIAIIPIGYADGLDRHFSNG----------GGEV 750 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G+ PI+G I MD M D+TD+ GD + IFG ++ + +++ T Y++L Sbjct: 751 VINGHRCPIIGNICMDACMIDVTDT-DAHEGDSVIIFGEELPVSELSDKLKTIPYEILTS 809 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 810 ISPRVKRVY 818 >gi|325979040|ref|YP_004288756.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178968|emb|CBZ49012.1| Alanine racemase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 368 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 173/382 (45%), Gaps = 27/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + + IDL A+ N ++ A + + AVVK NAYG G +A A+++ V Sbjct: 1 MISSLHRPTKAVIDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATNVAQAIHHL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L I P + + D ++ ++S L ++ Sbjct: 60 DGFCVSNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ + + + K ++ I +H A AD+ + Sbjct: 120 SLAGLDVHLKVDSGMGRIGVRSLDEAENVIANLKKSGANVAGIFTHFATADEADDTKFNE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QLE F L+++ A + +S+ + F L R GI +YG +++ +P+ Sbjct: 180 QLEFFTNLVNNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++ AG V YG ++ IA IGYADG+ L G Sbjct: 240 KPALSLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G+++MD + + L +G + + G + I D+A Sbjct: 295 -------VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQEGSKVISATDLAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 GT NY++L + R + Y+ Sbjct: 346 KRGTINYEVLCLLSDRIPRVYS 367 >gi|321311401|ref|YP_004203688.1| alanine racemase [Bacillus subtilis BSn5] gi|320017675|gb|ADV92661.1| alanine racemase [Bacillus subtilis BSn5] Length = 394 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 172/384 (44%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ + ++ AVVK N YG G ++A G + V Sbjct: 6 REVWIEVNLDAVKKNLRAIRRHIPHKSKIMAVVKANGYGHGSIEVARHALEHGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 SVEEG+ LR A I VL K N+ V + ++++ S Sbjct: 66 SVEEGIVLRKAGITAPILVLGFTSLSCVKKSAAWNITLSAFQVDWMKEANEILEKEASAN 125 Query: 124 Y---ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L+ K + + I +H + AD+P + + +Q Sbjct: 126 RLAIHINVDTGMGRLGVRTKEELLEVVKALKASKFLRWTGIFTHFSTADEPDTTLTKLQH 185 Query: 180 ERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230 E+F + +S +GIE + +++ + P + + R GI LYG Sbjct: 186 EKFISFLSFLKKQGIELPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLNLV 245 Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ +ARI ++ VSYG + +IA IGYADGY LS Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTVSYGATYIAEPNEVIATLPIGYADGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + ++ + G+ + I+G +I +D+ Sbjct: 303 --------GFVLHRGKRVPVAGRVTMDMIMVSLGENGEGKQGEEVVIYGKQKGAEISVDE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY+++ + R +FY Sbjct: 355 VAEMLNTINYEVVSTLSRRIPRFY 378 >gi|197285367|ref|YP_002151239.1| alanine racemase, catabolic [Proteus mirabilis HI4320] gi|194682854|emb|CAR43168.1| alanine racemase, catabolic [Proteus mirabilis HI4320] Length = 370 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 21/366 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ I+L AL +N + + + ++ +VVK +AYG G + PAL + F + Sbjct: 2 SRPAKISINLDALSHNLSVIKSKAQGSKVWSVVKADAYGHGLSCVWPALSH--TDGFALI 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++ + LR I +L G + + + + + + Sbjct: 60 ELDKAIMLREQGWVGPILLLEGFFKPDDVYLLERYSLTTVVHADWQFEAIEQAQLERPIN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++ + + +SH A AD + Q+ Sbjct: 120 IYLKLNSGMNRLGYRPEDYQQAIQRAKGITNIGSIVQMSHFANADTGLNMATQKQII--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 S + LA+S+ IL P H RPGI LYG + +Q V+T Sbjct: 177 -DSSMVNDLPRCLANSAAILFEPQTHHSWVRPGIILYGVSPSGVWQDIADFDLQPVMTFN 235 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + ++ I+ GE + YG + RD IAV A GYADGYP G Sbjct: 236 SEVLAIQSVKKGEQIGYGSRYTAQRDMRIAVVACGYADGYPRHA-----------PDGTP 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +KG+ ++G+I+MDM D+TD +E G ++++G + +D+VALA GT Y+LL Sbjct: 285 VIVKGHKTQLVGRISMDMLTIDVTDLPDVEHGSPVELWGNQLPVDEVALACGTIGYELLC 344 Query: 360 RIGTRY 365 I R Sbjct: 345 AIAPRV 350 >gi|261822874|ref|YP_003260980.1| alanine racemase [Pectobacterium wasabiae WPP163] gi|261606887|gb|ACX89373.1| alanine racemase [Pectobacterium wasabiae WPP163] Length = 359 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 103/374 (27%), Positives = 166/374 (44%), Gaps = 21/374 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + I AL++N + L+ ++ AVVK NAYG G + A + + Sbjct: 1 MKT---ATAVISRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIESAHTFCD--ADCY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E + LR I +L G + + + + P+ + + Sbjct: 56 GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLAEHQLETAVHSPEQLAALEQATLPQ 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG +RLG+ ++A F + + + Q I+SH AD+P + QL Sbjct: 116 PLRVWMKLDTGMHRLGVLPEQADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQL 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236 F G + S+A+S GILL P H RPGI LYG + N+ Q + Sbjct: 176 ACFDAFTQGKPGAQ-SIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPAM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +I +R+ AGE V YG RD+ + V A+GY DGYP Sbjct: 235 TFTSHLIAVREHKAGEAVGYGSTWTSPRDTRLGVVAVGYGDGYPR-----------CAPA 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G I G VP+ G+++MDM D+ +VGD ++GP + ++ +A +G + Y+ Sbjct: 284 GTPVLINGREVPLSGRVSMDMITIDLGPDAQDKVGDEAILWGPALSVERIAAHTGVSAYE 343 Query: 357 LLVRIGTRYAKFYT 370 L+ R+ R YT Sbjct: 344 LITRLTQRATLEYT 357 >gi|261343600|ref|ZP_05971245.1| alanine racemase [Providencia rustigianii DSM 4541] gi|282567981|gb|EFB73516.1| alanine racemase [Providencia rustigianii DSM 4541] Length = 354 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 163/367 (44%), Gaps = 23/367 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R I L +L++N + G A+ +V+K +AYG G ++ L N F V Sbjct: 3 RPIRAVIHLQSLEHNLSVIRQNIGAAKIWSVLKADAYGHGIHRVWRGLKN--TDGFAVLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR + I +L G ++ + D + + + Sbjct: 61 LHEAILLREEGWEGPILLLEGFFQQEDLQVIDQYQLTTSVHSHWQLTAIEQATLHQPLSV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ-LERFR 183 +++++G NRLG + +E + + + ++SH A +D PS +Q + +F Sbjct: 121 YIKLNSGMNRLGFTTEEYVSVVSKLQSMANVKNVTLMSHFANSDIPSGIDQPLQKIMQF- 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAE 239 + +A+S +L N H+ R GI LYG + S + +Q ++ + Sbjct: 180 ----DGLHLNTCIANSGAVLWHKNTHYDWVRAGIVLYGASPSGKWSDIEKYNLQAAMSLQ 235 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I + AGE + YG + T+ IA A GYADGYP G Sbjct: 236 SEIIAIHEIQAGESIGYGSKFTTTKPMHIATVACGYADGYPRHA-----------PSGTP 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +LG ++MDM DI+D ++G ++++G +I +DDVA A+GT Y+LL Sbjct: 285 VWCNGMRCSLLGAVSMDMLTIDISDCPDAKLGSLVELWGQNIPVDDVAEAAGTIGYELLC 344 Query: 360 RIGTRYA 366 + R Sbjct: 345 ALARRVP 351 >gi|251788347|ref|YP_003003068.1| alanine racemase [Dickeya zeae Ech1591] gi|247536968|gb|ACT05589.1| alanine racemase [Dickeya zeae Ech1591] Length = 358 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 163/373 (43%), Gaps = 21/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + ID AL++N + ++ +R A+VK NAYG G + A A + + Sbjct: 1 MKT---ATAVIDRQALRHNLQHIRQMAPQSRLIAIVKANAYGHGAVEAARAFSD--ADGY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ + E + LR I +L G E + + + + + Sbjct: 56 GVSRLSEALALRTAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQLAALEQAHLPH 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG +RLG+ Q+A F S + Q I+SH AD+P + QL Sbjct: 116 PLTVWMKLDTGMHRLGVLPQQAEAFYARLSRCSNVVQPVNIMSHFCRADEPQTDTTQRQL 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VV 236 + F G S+A+S GILL P H RPGI YG + + Sbjct: 176 DCFDAFAQGKPG-RQSIAASGGILLWPQAHRDQIRPGIIQYGVSPLAEGDASQWQLKPAM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +R+I +R+ AGE V YG RD+ + V AIGY DGYP Sbjct: 235 TLTSRLIAVREHPAGEPVGYGSLWSSPRDTRLGVIAIGYGDGYPR-----------DAKS 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G +I G VP+ G+++MDM D+ +VGD + ++G + ++ +A +G + Y+ Sbjct: 284 GTPVWINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGGPLPVEKIAAHNGISAYE 343 Query: 357 LLVRIGTRYAKFY 369 L+ R+ R Y Sbjct: 344 LITRLTARTELEY 356 >gi|71275083|ref|ZP_00651370.1| Alanine racemase [Xylella fastidiosa Dixon] gi|170731066|ref|YP_001776499.1| alanine racemase [Xylella fastidiosa M12] gi|71163892|gb|EAO13607.1| Alanine racemase [Xylella fastidiosa Dixon] gi|167965859|gb|ACA12869.1| Alanine racemase [Xylella fastidiosa M12] Length = 369 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ L G + AVVK +AYG G + A AL V F V Sbjct: 9 RPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGFAVAC 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR QA I +L G +E + + + + + Sbjct: 67 IEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGV 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGL +E D + + ++++HLA AD+ + + Q F Sbjct: 127 WLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFAH 186 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 AS+ +SSG+L + RPG+ LYG + S P++ V+ + Sbjct: 187 ASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYS 245 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG R + + V A+GYADGYP G Sbjct: 246 KLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPL 294 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y LL Sbjct: 295 LVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCG 354 Query: 361 IGTRYAKFY 369 + R ++Y Sbjct: 355 L-KRVRRYY 362 >gi|86606130|ref|YP_474893.1| alanine racemase [Synechococcus sp. JA-3-3Ab] gi|86554672|gb|ABC99630.1| alanine racemase [Synechococcus sp. JA-3-3Ab] Length = 429 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 111/378 (29%), Positives = 173/378 (45%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ID L+ N + LS + AVVK NAYG G +AP AG + V Sbjct: 56 SRAWVEIDAAQLRENLRLLQARLSPDTEIWAVVKANAYGHGARLVAPIALAAGAKGLCVA 115 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVS 121 ++ EG++LR QA I VL ++ E + + + + G Sbjct: 116 TLAEGIELRQAGLQAPILVLGALNTWAELQQAMAARLEVSLTRAEQIPVMRQVARWAGRP 175 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P + VDTG RLG+ QEA + + SH A AD+P S V + Q R Sbjct: 176 VPVHVNVDTGMTRLGIPWQEAAAVWGQICRIPELEGCSLFSHFATADEPDSPVMAQQEAR 235 Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTV 235 F ++ + L +S+G L+ H+ R G++LYG + + P + + Sbjct: 236 FAQVVEQIRQAGDPLPPLHLDNSAGALIH--LHYPRVRLGLALYGLSPAPHLQVPGLRPI 293 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +AR+ I+ A VSYG + +R S IA AIGYADG P LSG Sbjct: 294 LRLKARLTHIQTVPAHTGVSYGHRYVTSRPSRIATLAIGYADGIPRRLSGWL-------- 345 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-----KLDDVALAS 350 +G+++G ++ +G ITMD M+D+T+ I+VGD +++ GP + + D A Sbjct: 346 ---RGWVRGSLIQQVGTITMDQCMWDVTERPDIQVGDVVELLGPHLASAGFSIQDWADQL 402 Query: 351 GTTNYDLLVRIGTRYAKF 368 GT +Y+LL + R + Sbjct: 403 GTISYELLCGLSARLPRV 420 >gi|308172332|ref|YP_003919037.1| D-alanine racemase [Bacillus amyloliquefaciens DSM 7] gi|307605196|emb|CBI41567.1| D-alanine racemase [Bacillus amyloliquefaciens DSM 7] gi|328552144|gb|AEB22636.1| alanine racemase [Bacillus amyloliquefaciens TA208] gi|328910417|gb|AEB62013.1| D-alanine racemase [Bacillus amyloliquefaciens LL3] Length = 389 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 162/384 (42%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M++ F R +I+L+A+K N M G N AVVK NAYG G ++ A AG Sbjct: 1 MNTASFYRDTWAEINLSAIKENITHMKKHIGENVHLMAVVKANAYGHGDLEVGKAALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL + P + + ++ SV L ++ + Sbjct: 61 ASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHL 120 Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + P+ L+VDTG NRLG+ +E + +H A AD+ + Sbjct: 121 GSE-TVPFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLVCKGVFTHFATADEKNRDYF 179 Query: 176 SVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 Q ERF+ LI+ + A+S+ L F R GIS+YG + + + Sbjct: 180 LFQFERFKKLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQNEIP 239 Query: 234 TVV----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + T + + ++K GE VSYG +D I IGYADG+ LS Sbjct: 240 FQLKPAFTLHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLS----- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G I G + I G+I MD M ++ S G + + G I +D+ Sbjct: 295 -------GTAVLIDGKRMNIAGRICMDQLMVELDQSYP--PGTKVTLIGSQKEETITMDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + + Sbjct: 346 IAGRLETINYEIPCTISSRVPRMF 369 >gi|297564288|ref|YP_003683261.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848737|gb|ADH70755.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 402 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 161/370 (43%), Gaps = 26/370 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D++A+ +N M + N+ AVVK N +G G ++A A AG VTS+EE + Sbjct: 26 VDISAIAHNVRFMAKRT-NSEILAVVKANGFGHGAVEVARASLEAGATWLGVTSLEEALA 84 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVD 129 LR +A + ++ + SV L + G L+ D Sbjct: 85 LRRAGLRAPVLCWLHRADQDFDSAVAADVDLSVPSVGHLRAVADAAVRTGRVAHVHLKAD 144 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTLI 186 TG +R G + +L ++ + SHLA AD P + + Q+ F + Sbjct: 145 TGLSRNGAPPDAWPGLVGLARVLELDGLVRVRGVWSHLASADLPGAATTAQQVTAFEGAL 204 Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 S + LA+++ IL P HF L R G+ LYG + ++ +T AR Sbjct: 205 SQARAAGLDPSLRHLANTAAILNEPATHFDLVRAGVGLYGVEPVEGRRFGLRLAMTLRAR 264 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + ++R+ AG VSY R+SL+A+ +GYADG P + Sbjct: 265 VAMVRRVPAGTGVSYHHAYTTPRESLLALVPLGYADGVPRAAGDR-----------AYVW 313 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDL 357 I G P+ G+I MD + D+ + + GD + +FGP + +++ A +GT +++ Sbjct: 314 IAGRRCPVAGRIAMDQFVVDVGG-MDVREGDEVVVFGPGDRGEPTVEEWADWAGTIPHEI 372 Query: 358 LVRIGTRYAK 367 L +G R + Sbjct: 373 LTGVGARVPR 382 >gi|144899038|emb|CAM75902.1| Alanine racemase [Magnetospirillum gryphiswaldense MSR-1] Length = 369 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 192/376 (51%), Gaps = 17/376 (4%) Query: 1 MHSNEFLR--LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M +++ L IDL A+ +NW ++ A + NA A VVK + YGLG +A AL AG Sbjct: 1 MTAHDRATGILSIDLDAIADNWRTLAAHAPNAEAAGVVKADGYGLGAAPVARALRKAGCT 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 FFV +++EG+ LR + ARI VL G+ PG LIPV++S Q+ +S + Sbjct: 61 TFFVATIDEGISLRPHVNDARILVLGGVLPGTGADFIGHQLIPVLNSPEQIGLWSGFAAA 120 Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G P A+ +D+G NRLGL ++ Q L++SH+ACAD+ +N Sbjct: 121 GGRPLPAAIHIDSGMNRLGLDETAVELLAADNRRLDGIQPVLVMSHMACADERDHAMNRQ 180 Query: 178 QLERFRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 QL+RF L SLA+SS I LG +YHF L RPG LYG + +P++ V Sbjct: 181 QLDRFTVLADRLGVSAPRSLAASSTIFLGADYHFDLIRPGAGLYGINPMPDSPNPLRQTV 240 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +I+ +R + V YG + +A A GYADG +L Sbjct: 241 RLHGKILQVRDVDTPQTVGYGASHRFKSKGRVATIACGYADGLFRSLGNR---------- 290 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTN 354 G G I G VP++G+I+MD+ D++ V G +++ GPD +D +A +GT Sbjct: 291 -GFGVIGGVKVPVVGRISMDLITLDVSAVAPAHVHAGALVELIGPDHDVDALAAEAGTIG 349 Query: 355 YDLLVRIGTRYAKFYT 370 Y++L +G RY + Y+ Sbjct: 350 YEILTSLGRRYLRDYS 365 >gi|315185426|gb|EFU19197.1| alanine racemase [Spirochaeta thermophila DSM 6578] Length = 388 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 157/373 (42%), Gaps = 23/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 I L L++N + G R A VK +AYG G ++ L GV+ V + EE Sbjct: 6 AVIYLPHLRHNLREIRRRVGEGRMVCAAVKADAYGHGAVRVGRVLVEEGVEMLGVATPEE 65 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYAL 126 G +L AR+ +L ++ + + + + G + Sbjct: 66 GAELVEAGVGARVLLLGLTDGAGLELAVEAGVELAVGDREYVREVVRVARAKGRRVRVHV 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +VDTG R G + +EA+ + +L+ + +H +D+ Q+ERF ++ Sbjct: 126 EVDTGMGRTGCAPEEAVGVVEEVEGAGVLELAGMWTHFPSSDEADDGFTEAQVERFLQVV 185 Query: 187 SHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTAE 239 + A+S GI+ P + RPGISLYG + + V+ Sbjct: 186 GRVRARGISPGLLHAANSGGIIGHPPSWLDMVRPGISLYGYYPSEEQERTLSLLPVMEFV 245 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++++ ++K G VSYG + RD+ IA A GYADGY LS + Sbjct: 246 SQVVFLKKVRKGTPVSYGRTWRAPRDTWIATVAAGYADGYSRLLSSR-----------AE 294 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALASGTTNYD 356 I+G P++G++ MD M D+ L + D + +FGPD +++A GT Y+ Sbjct: 295 VLIRGRRYPVVGRVCMDQFMVDVGPHLEVARYDRVVLFGPDPAGPSAEELARLVGTIPYE 354 Query: 357 LLVRIGTRYAKFY 369 + + R + Y Sbjct: 355 ITCAVSRRVPRVY 367 >gi|255280965|ref|ZP_05345520.1| alanine racemase [Bryantella formatexigens DSM 14469] gi|255268413|gb|EET61618.1| alanine racemase [Bryantella formatexigens DSM 14469] Length = 390 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 164/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + + +IDL A+ N+ SM + +A AV+K + YG G IA + Sbjct: 1 MKNYSRVYAEIDLDAIAYNFESMHRNIHPSAGMIAVIKADGYGHGAVPIARLAEPLDYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 F V + EE ++LR + + +L + + + ++ PV+ + SK Sbjct: 61 GFAVATAEEALQLRTAGIKKPVLILGYVFEEHYEELIRADIRPVVFKLSMAEQLSKEAVR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + + +DTG R+G E+L ++ I +H A AD+ Sbjct: 121 QQKNAVIHIGLDTGMTRIGFPCTAESLLEIMLISRLPNIKIEGIFTHFARADETDKTSAQ 180 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 QLE F ++S+GI+ P + L R GIS+YG + Sbjct: 181 NQLEHFLKFTDSLKEKGVDIPLRHCSNSAGIIDMPYANLNLVRAGISIYGIYPSEEVCKE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + P++ + ++ I L+++ AG VSYGG R + IA +GYADGYP LS Sbjct: 241 NVPLKPAMALKSHITLVKEVEAGVAVSYGGTFVTKRKTRIATIPVGYADGYPRLLSNR-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G+ I G PILG++ MD M D+T+ + D + + G D + ++ Sbjct: 299 ---------GRVLIHGKSAPILGRVCMDQFMVDVTEIPQAQELDAVTLLGEDGESVLSVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG Y+ + I R + Y Sbjct: 350 ELGGLSGRFPYEFVCDISKRVPRVY 374 >gi|83591749|ref|YP_425501.1| alanine racemase [Rhodospirillum rubrum ATCC 11170] gi|123527432|sp|Q2RXD1|ALR_RHORT RecName: Full=Alanine racemase gi|83574663|gb|ABC21214.1| alanine racemase [Rhodospirillum rubrum ATCC 11170] Length = 374 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 16/366 (4%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL A+ +NW ++ L A A VVK NAYGLG K+ PAL AG +DF V ++E Sbjct: 11 LTVDLDAIADNWLALRGRLRPGASCAGVVKANAYGLGARKVVPALLAAGCRDFVVAQIDE 70 Query: 68 GVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125 G+ + P AR+FVL G G E + D+ LIPV++S Q+ ++K G P A Sbjct: 71 GLDILDLLPADARLFVLSGPPEGAEDEVLDSALIPVLNSPDQIDRWAKACARAGRKAPAA 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L VDTG RLGL+ E + L+++HLACAD+P +N+ Q F Sbjct: 131 LHVDTGMRRLGLTPLELDALLADPRPLAAFTPVLVMTHLACADEPDHPLNAEQRALFAAA 190 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + + G+ ASLA++SGI LGP +HF L RPGI LYGG + ++PM+ VV + +I+ + Sbjct: 191 AARFPGLRASLANTSGIFLGPEWHFDLARPGIGLYGGNPTVGTANPMRQVVKLQGKILQV 250 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ V YG S IA +GYADG+P + G + G Sbjct: 251 RRIDTPLSVGYGATHTAPAGSTIATVGVGYADGFPRSAGNRAM-----------GLLAGR 299 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 VP++G+++MD+ FD++D G I + GPD+ +D +A + T +Y++L R+G Sbjct: 300 SVPVVGRVSMDLLTFDVSDVPENLARPGAMIDLLGPDLSVDALADRADTVSYEILTRLGA 359 Query: 364 RYAKFY 369 RY + Y Sbjct: 360 RYPRRY 365 >gi|150391836|ref|YP_001321885.1| alanine racemase [Alkaliphilus metalliredigens QYMF] gi|149951698|gb|ABR50226.1| alanine racemase [Alkaliphilus metalliredigens QYMF] Length = 391 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 167/381 (43%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I+L LK+N + ++ + AVVK N YG G IA L + G V Sbjct: 8 RPTWAEINLDHLKHNIREVKKVINKDTLLCAVVKANGYGHGVMTIAKTLLDHGADRLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++ E ++LR Q ++ G P Q ++I D N+I I + Q +K+ S Sbjct: 68 TLSEAIELRQGGYQDIPILVLGYTPETQGQVILDYNVIQTIYTYEQAKALAKIGKEQKKS 127 Query: 122 HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++DTG +RLG + + ++ + + I +H A AD+ + Q Sbjct: 128 MTIHLKIDTGMSRLGFNCSQKTIEEIKQIIELEYINVEGIYTHFAVADEKNKDYTKFQFN 187 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PM 232 F L Y+ +++S+ I+ P+ + + R GI LYG + +H + Sbjct: 188 CFMELTEELKKEGYQIPIRHVSNSAAIIDLPDMNLDMVRAGIMLYGLYPSPDVNHEAVQL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ + R+ ++ L + VSYG K + I IGYADG+ L Sbjct: 248 KQVMELKTRVAHVKNVLPQQGVSYGLTYKTKGEEKIITLPIGYADGFTRML--------- 298 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVAL 348 + +KG PI+G+I MD M D T IE GD + +F D +DD+A Sbjct: 299 --TDKAELILKGEKRPIVGRICMDQCMADATGI-EIEQGDVVTLFSNDPASGCSIDDIAR 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY+++ +G R + Y Sbjct: 356 KLNTINYEIVCMVGRRVPRAY 376 >gi|189218087|ref|YP_001938729.1| Alanine racemase [Methylacidiphilum infernorum V4] gi|259710070|sp|B3DWZ0|ALR_METI4 RecName: Full=Alanine racemase gi|189184945|gb|ACD82130.1| Alanine racemase [Methylacidiphilum infernorum V4] Length = 387 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 170/373 (45%), Gaps = 18/373 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ ++ID AL+ N + AVVK AYG G IA L ++GV+ Sbjct: 13 AHPRSWVEIDGRALRFNIRVARERIPKKTKIIAVVKSEAYGHGLIPIAKELVHSGVEVLG 72 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 + +++E ++LR ++ + +L I P + II N+ VISS + + S+ G Sbjct: 73 INNIDEAIELRQAGIRSALLILCPILPSEASIIVSYNVGVVISSYNEAKWLSQAAERQGK 132 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 +++DTG RLG + + ++ I +H + A + Q Sbjct: 133 KAIVHIKIDTGMGRLGFIPSQFIQEMEKIKRLSSLSIAAICTHFSQA-ETDIEATEKQWL 191 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 ++KG+ +A+S+ + Y R G++LYG ++ ++T + Sbjct: 192 ELLKFRHYFKGLPIHVANSAALWRKSVYACDYVRIGLALYGIAPMPFLRRFLKPILTWKC 251 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I+LI++ G +SYG KL + S IAV ++GY DGY +LS Sbjct: 252 KIVLIKELPRGHPISYGATYKLKKPSRIAVLSVGYGDGYCRSLSN-----------KASV 300 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356 IKG P+ G ITM++ M DITD S +VGD + G I D++A S T +Y+ Sbjct: 301 LIKGKRCPVRGAITMNLLMVDITDLPSCKVGDEAVLLGTQGKESITADELAKLSQTISYE 360 Query: 357 LLVRIGTRYAKFY 369 ++ I + + Y Sbjct: 361 IITNIHSHIRRNY 373 >gi|34580918|ref|ZP_00142398.1| alanine racemase [Rickettsia sibirica 246] gi|28262303|gb|EAA25807.1| alanine racemase [Rickettsia sibirica 246] Length = 355 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 183/365 (50%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+L+ +KNN+ + + + A VK N YGLG +I+ AL A + FFV S EEG Sbjct: 6 VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEANCRHFFVASSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 66 VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGLS E ++ K L IISHLA +++ + N QL RF+ + Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG VT +A II ++ Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTK------NPVTLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADG+ S G+ FI Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MD+ D+TD E+ G +I G D +A GT Y++L +G+R Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRKY 353 >gi|197119823|ref|YP_002140250.1| alanine racemase [Geobacter bemidjiensis Bem] gi|254802364|sp|B5EBG2|ALR_GEOBB RecName: Full=Alanine racemase gi|197089183|gb|ACH40454.1| alanine racemase [Geobacter bemidjiensis Bem] Length = 379 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 113/389 (29%), Positives = 176/389 (45%), Gaps = 32/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S ++IDL AL++N+ + AVVK +AYG G + ++ L GV Sbjct: 1 MDS-RPTVVEIDLAALRHNFSLVQKRVPEGCGLLAVVKADAYGHGFQYVSEELEKLGVDA 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLM 116 F V + EGV+LR+ + +L GI+PG+E+ N+ + S+ L + + Sbjct: 60 FAVAFLAEGVQLRMSGITRPVLILGGIYPGEERRCIGLNISTALFSLEQAAALDQAALEI 119 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173 C L+VDTG RLG+ E +F K +L I SH A AD+ Sbjct: 120 KCYRKAHIHLKVDTGMGRLGVPYHEVPEFLAKLKQFKNLELEGIFSHFASADELDPEGIA 179 Query: 174 VNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--I 226 +Q ERF + Y +A+S+ IL + L RPGI LYG Sbjct: 180 FTKLQAERFNAAVEEARRQGYAPTYVHVANSAAILTQDLPYCNLARPGIILYGALPSGDF 239 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 P Q V+ ++R+ +++ G +SYG + +LIA +GYADGY +L+ Sbjct: 240 EGQVPSQPVMRLKSRVAMLKWVEPGTSISYGRRYVAAERALIASVPVGYADGYCRSLTN- 298 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----I 341 G+ I+G + G + MD M D+T+ + VGD + + GPD I Sbjct: 299 ----------KGEALIRGQRAKVAGTVCMDWIMLDVTNVKGVAVGDDVTLLGPDPMGDCI 348 Query: 342 KLDDVALASGTTNYDLLVRI-GTRYAKFY 369 +++A +GT Y++L I R + Y Sbjct: 349 SAEEMAEKAGTIPYEVLCGIATRRVRRVY 377 >gi|270263327|ref|ZP_06191597.1| hypothetical protein SOD_d03440 [Serratia odorifera 4Rx13] gi|270043015|gb|EFA16109.1| hypothetical protein SOD_d03440 [Serratia odorifera 4Rx13] Length = 359 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 174/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + + +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + P + Sbjct: 62 EALMLRSGGIVKPILLLEGFFCAEDLPVLVANNIETAVHSIEQLEALEQTELARPVPVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S + + Q I+SH + AD+P S Q++ F + Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACRNVAQPVNIMSHFSRADEPDSDATLKQMQCFESF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G + S+A+S G LL P+ H RPGI LYG + + +Q +T ++ + Sbjct: 182 VRGKPG-QRSIAASGGTLLWPDAHNDWVRPGIILYGVSPMEDACGSQFDLQPAMTLKSNL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE V YGG D+ + V A+GY DGYP + G ++ Sbjct: 241 IAVRDHKAGEAVGYGGTWVSEGDTRLGVVAMGYGDGYPRSA-----------PSGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VP++G+++MDM D+ + + +VGD + ++G + ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVPVVGRVSMDMISVDLGPNATDKVGDEVVLWGKALPVERIAACTGISAYELITKLT 349 Query: 363 TRYAKFY 369 R A Y Sbjct: 350 QRVAMEY 356 >gi|313899530|ref|ZP_07833039.1| alanine racemase [Clostridium sp. HGF2] gi|312955637|gb|EFR37296.1| alanine racemase [Clostridium sp. HGF2] Length = 388 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 100/390 (25%), Positives = 166/390 (42%), Gaps = 31/390 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + SN L+IDL + +N + L + + A+VK N YG G + + + G+ Sbjct: 8 LKSNTRSWLEIDLNRISHNIKEVQKLIPSTSKIMAIVKANGYGHGDVECSRMMEQQGIDF 67 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F V+SV+EGV+LR Q+ I VL P + + +LI + S + Sbjct: 68 FGVSSVDEGVRLRENGIQSPILVLGYTPPVHFHYLNEASLIQTLVSKEYAEKLNAYAKEQ 127 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA------CADDPSS 172 V +VDTG +R+G+ Q+ + + + + C D+ + Sbjct: 128 NVVVKAHAKVDTGMSRIGIIAQDHAYHIEDIKALYRLEYLDVCGIFSHFSVSDCLDEENC 187 Query: 173 HVNSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 + Q+ F +++ + L +S GIL PN H+ RPG+ G T Sbjct: 188 AFTNHQIALFERVLADLRAEGIDPGTTHLQNSYGILNYPNLHYDYVRPGLLWMGVTSDDA 247 Query: 228 KSHP----MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + Q ++ +A + L++ G VSYG K + +A A+GYADG+P ++ Sbjct: 248 LAIRTAPQFQPIMEWKANVSLVKDIQPGVTVSYGRHFKAEVCTRVATLAVGYADGFPRSV 307 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 S G + G VPI+G I MD M DIT + GD + G D Sbjct: 308 SNQ----------GACVLLHGRRVPIIGNICMDQMMVDITGLDGVSEGDVATLIGCDGDE 357 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +D+++ + T N + L I R + Y Sbjct: 358 VLSVDELSRLAHTINNETLCWISQRVPRIY 387 >gi|163786834|ref|ZP_02181282.1| alanine racemase [Flavobacteriales bacterium ALC-1] gi|159878694|gb|EDP72750.1| alanine racemase [Flavobacteriales bacterium ALC-1] Length = 368 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 162/378 (42%), Gaps = 21/378 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + L+IDL+AL +N++ + L+ + AVVK AYG +IA L + V Sbjct: 1 MSKAQETILEIDLSALTHNFNYLKSKLNAKTKFLAVVKAFAYGSDSIEIAKHLQSLEVDY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V +EGV LR I VL+ P K I + L P I S L + + Sbjct: 61 FAVAYAKEGVVLRDAGITTPIIVLHP-QPVNFKTIIERCLEPSIYSAKVLNEFIAVAETE 119 Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 ++P ++ +TG NRLG + K + SHLA ++D + Sbjct: 120 SQTNYPVHIKFNTGLNRLGFWENDVEYIVSKLRVTKSIVAKSLFSHLAVSEDINEEEFTN 179 Query: 177 VQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 +Q++ F+ + + I L ++SG++ P+ H + R GI LYG + + + Sbjct: 180 LQVQNFKQIAKEFESKIGYKIWLHLCNTSGVINYPDTHLDMVRCGIGLYGFGNSVKEDQY 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ I I K GE V Y K IA IG+ADG Sbjct: 240 LKPIASLKSVISQIHKIEKGETVGYNRAYKAKGFEKIATVPIGHADGINRIYGNG----- 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G I I+G + MDM M +IT+ GD + IF + K A ++ Sbjct: 295 -----NGFVIINSKKAQIIGNVCMDMIMVNITNI-DCNEGDEVIIFNTNHKASKFAESAN 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y++L I R + + Sbjct: 349 TISYEILTSISQRVKRVF 366 >gi|255308493|ref|ZP_05352664.1| alanine racemase [Clostridium difficile ATCC 43255] Length = 385 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 153/376 (40%), Gaps = 24/376 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I+L L+ N +++ L + + V+K +AYG G ++A L V V Sbjct: 7 PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVAR 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 EG++LR I L + + + S+ +++ G Sbjct: 67 TAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKAC 126 Query: 124 YALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G R+G E ++ + L + +H A AD+ S Q + Sbjct: 127 VHVKIDSGMTRIGFQPNEKSVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNY 186 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 + + +++S+ I+ P+ + R GI LYG + ++ Sbjct: 187 KFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRP 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + +++I I++ G +SYG + T IA IGYADG+ Sbjct: 247 AMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQKNP-------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTT 353 K IKG + ++G+I MD M I + I+VGD + +FG ++ + +A GT Sbjct: 299 ----KVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTI 354 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L I R + Y Sbjct: 355 NYEVLCMISRRVDRVY 370 >gi|326777201|ref|ZP_08236466.1| Alanine racemase [Streptomyces cf. griseus XylebKG-1] gi|326657534|gb|EGE42380.1| Alanine racemase [Streptomyces cf. griseus XylebKG-1] Length = 408 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 160/381 (41%), Gaps = 29/381 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N + + A+ AVVK + YG G A A AG + Sbjct: 24 RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAAREAGATWLGTATP 83 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR RI G + + ++ + + + G + Sbjct: 84 QEALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSVGGMWALREVVAAAAEAGRTARI 143 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLER 181 L+ DTG R G + + + + + SH ACAD+P + QL Sbjct: 144 QLKADTGLGRGGCQPADWPELVGEALAAERAGRVEVTGLWSHFACADEPGHPSIAAQLAV 203 Query: 182 FRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 +R L+ + +G+E LA+S L P HF L R GI++YG + + Sbjct: 204 YRDLVAYAEKEGVEPEVRHLANSPATLTIPEAHFDLVRTGIAMYGVSPAPELGTSADLGL 263 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+T A + L++ A AG +SYG T + + + +GYADG P SG Sbjct: 264 RPVMTLAASVALVKDAPAGHGISYGHHYTTTAGTTLGLIPVGYADGVPRHASGT------ 317 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G + G + + G++ MD + D+ D E G +FGP + D A Sbjct: 318 -----GPVLVGGKVRRVAGRVAMDQFVVDL-DGDRPEAGAEAVLFGPGDRGEPTAQDWAE 371 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 A+GT Y+++ RIGTR + Y Sbjct: 372 AAGTIAYEIVTRIGTRVPRVY 392 >gi|154684967|ref|YP_001420128.1| hypothetical protein RBAM_004980 [Bacillus amyloliquefaciens FZB42] gi|154350818|gb|ABS72897.1| Alr [Bacillus amyloliquefaciens FZB42] Length = 389 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 162/384 (42%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M++ F R +I+L+A+K N M G N AVVK NAYG G ++ A AG Sbjct: 1 MNTASFYRETWAEINLSAIKENVTHMKKHIGQNVHLMAVVKANAYGHGDLEVGKAALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL + P + + ++ SV L ++ + Sbjct: 61 ASCLAVAILDEAISLRKRGITAPILVLGAVPPEYVQAAAEYDVTLTGYSVEWLQEAARHL 120 Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + P+ L+VDTG NRLG+ +E + +H A AD+ + Sbjct: 121 GSA-TVPFHLKVDTGMNRLGVKTEEEIQSVLKILSQNPGLVCKGVFTHFATADEKNRDYF 179 Query: 176 SVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 Q +RF+TLI+ + A+S+ L F R GIS+YG + + Sbjct: 180 LFQFDRFKTLIAPLPLKELMVHCANSAAGLRLKKGFFNAVRFGISMYGLRPSADIQSEIP 239 Query: 234 TVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + + ++K GE VSYG +D I IGYADG+ LS Sbjct: 240 FQLKPAFALHSVLSHVKKIRKGESVSYGATYTAEKDQWIGTVPIGYADGWLRKLS----- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G I G + I G+I MD M ++ S G + + G I +D+ Sbjct: 295 -------GTSVLIGGKRMNIAGRICMDQLMVELDQSYP--PGTKVTLIGSQKEETITMDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY++ I +R + + Sbjct: 346 IAGRLGTINYEVPCTISSRVPRMF 369 >gi|284048796|ref|YP_003399135.1| alanine racemase [Acidaminococcus fermentans DSM 20731] gi|283953017|gb|ADB47820.1| alanine racemase [Acidaminococcus fermentans DSM 20731] Length = 389 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 157/386 (40%), Gaps = 29/386 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M S +IDL AL N+H + + VVK +AYG G ++ L G Sbjct: 1 MKSTLRRTWAEIDLDALAYNYHKIREHIGPQVKFLGVVKADAYGHGAVQVGSHLQALGAN 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMS 117 V+S++E ++LR I +L Q + V L + + + Sbjct: 61 YLAVSSIDEAMELRFNGITMPILILGHTPREQVDRLICFNITQAVTCEAKALEYSEEAVK 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDF-----THNSFNKKLGQLSLIISHLACADDPSS 172 G + ++VDTG +RLG + ++ + + I +H A AD+P Sbjct: 121 YGGTLKIHVKVDTGMSRLGYICEGDYFEHGVEGIIHACSLPGLEPEGIFTHFAVADEPGE 180 Query: 173 H---VNSVQLERFRTLISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGT 223 Q FR + + A++ L P+ + + RPG+ LYG Sbjct: 181 DALAYTRHQFALFRKVCDEVEKRTGKKFKLRHCANTGATTLFPDTYLDMVRPGLLLYG-Y 239 Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + + ++ V+T + I I+ G +SYGG + + VA IGYADG+ L Sbjct: 240 GEHARMLGLKPVMTVKTTISTIKIYPKGTKISYGGIYTCPDTTRMGVAPIGYADGFMRCL 299 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343 S S + P G+I MDM M D+T ++VG +++FG L Sbjct: 300 SNRCSFVTEEG-----------PAPQRGRICMDMCMVDLTGKPKVDVGSELELFGTRQSL 348 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A +GT Y++ I R + Y Sbjct: 349 DDLAQLAGTIPYEITCNISKRVPRVY 374 >gi|329938191|ref|ZP_08287642.1| alanine racemase [Streptomyces griseoaurantiacus M045] gi|329302680|gb|EGG46570.1| alanine racemase [Streptomyces griseoaurantiacus M045] Length = 387 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 172/389 (44%), Gaps = 33/389 (8%) Query: 1 MHSNE----FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M ++E R +IDL AL+ N ++ A + A+ AVVK +AYG G A A AG Sbjct: 1 MKTSEAAPLRARAEIDLAALRANVRALRAHAPGAQLMAVVKADAYGHGALPCARAALAAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKL 115 + + EE + LR RI G + + +L +S + + Sbjct: 61 ARWLGTATPEEALALRAAGIPGRIMCWLWTPGGPWREAVEADLDLGVSGLWALREVTAAA 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172 + GV L+ DTG R G S + + + + L +++ + SHLACAD+P Sbjct: 121 RAAGVPARVQLKGDTGLGRNGCSPADWPELVAEALRAEAAGLLRITGLWSHLACADEPGH 180 Query: 173 HVNSVQLERFRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 QL RFR ++ + +G+ +A+S L P+ HF L R GI++YG + Sbjct: 181 PSVVPQLARFREMVGYAEERGVRPEVRHIANSPAALTLPDSHFDLVRTGIAMYGLSPSPE 240 Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ V+T A + L++ G VSYG D+ + + +GYADG P Sbjct: 241 LGAPADFGLRPVMTLAASLALVKHVPGGHGVSYGHHYVTPGDTTLGLVPLGYADGIPRHA 300 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---- 339 SG G + G + G++ MD + D+ VG +FGP Sbjct: 301 SG-----------AGPVLVGGKWRTVAGRVAMDQFVVDLGGDEPP-VGAEAVLFGPGDRG 348 Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 + +D A A+GT Y+++ RIGTR + Sbjct: 349 EPTAEDWAQAAGTIAYEIVTRIGTRVPRV 377 >gi|239980001|ref|ZP_04702525.1| alanine racemase [Streptomyces albus J1074] Length = 402 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 102/383 (26%), Positives = 157/383 (40%), Gaps = 32/383 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R++IDL AL+ N ++ A + A AVVK +AYG G + A A AG V + Sbjct: 2 RARVEIDLGALRANVRALRARTDGAAYMAVVKADAYGHGMVRCAEAALQAGATWVGVATP 61 Query: 66 EEGVKLRLYTPQ---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121 E ++LR AR+ G + + +L +S + L + G Sbjct: 62 YEALELRAAGVTPERARVMCWLWTPGGPWREGIEADLDMSVSDLWALAEVTEAARATGRR 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQ 178 L+ DTG R G + D + + L + SH ACAD+P + Q Sbjct: 122 ARIQLKADTGLGRNGCQPADWADLVDRARAAEREGLVTVTGLWSHFACADEPGHPSIAAQ 181 Query: 179 LERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229 L RF + +A+S +L P F L RPGI++YG + Sbjct: 182 LARFDEMSGRAYAGGLRPEVRHMANSPAVLTLPEARFDLVRPGIAMYGLSPAPELGTPAD 241 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 H ++ V+T A + L++ G VSYG + + + +GY DG P SG Sbjct: 242 HGLRPVMTLAAPLALVKHVPGGHGVSYGHHYVTAGPTTLGLVPLGYGDGVPRHASG---- 297 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G + G + G+I MD + D+ E G +FGP + +D Sbjct: 298 -------AGPVLVDGKWRTVAGRIAMDQFVVDLGGETPPE-GTEAVLFGPGDRGEPGAED 349 Query: 346 VALASGTTNYDLLVRIGTRYAKF 368 A A+GT Y+++ RIG R + Sbjct: 350 WARAAGTIGYEIVTRIGGRVPRV 372 >gi|221133975|ref|ZP_03560280.1| alanine racemase [Glaciecola sp. HTCC2999] Length = 367 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 112/378 (29%), Positives = 178/378 (47%), Gaps = 28/378 (7%) Query: 6 FLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 R ID+ AL +N+H + ++T AV+K + YG G KIA L + F V Sbjct: 1 MPRQTIAHIDINALLHNYHQAKNAAPQSQTMAVIKADGYGHGMLKIAQCLADV-ADGFAV 59 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMS 117 ++E + R I VL G P + D +L V+ Q+ + + L Sbjct: 60 AFIDEAIACRDAGLTQPILVLEGAHSPEDIVLAVDYDLWLVMHQPEQIDWLVEFDATLSV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + DTG +RLGLS E ++ L ++ H ACADD S+ +N+ Sbjct: 120 DETKPTVWFKCDTGLHRLGLSPNELETALRRVPSEYLDNAV-LMGHFACADDLSNPMNAH 178 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPM 232 QL + +++ + S+A+S I+ + H Q R GI+LYG + + + Sbjct: 179 QLTQLND-LANRYQLPISMANSPAIVADTDSHGQWNRLGIALYGAEPLNRSSAVQSNVVL 237 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+T A II +R+ G+ V YG + R S+IA AIGY DGYP Sbjct: 238 KPVMTLTAAIIGLRQIQPGDAVGYGQTWQAQRPSMIATVAIGYGDGYPRHA--------- 288 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI-EVGDYIQIFGPDIKLDDVALASG 351 G F++G VP++G+++MDM D+TD + +GD ++++G ++ + VA Sbjct: 289 --PSGTPVFLQGQTVPLVGRVSMDMITVDVTDLSQVPNIGDMVELWGANLSVTTVAAHIN 346 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+L+ RI R K Y Sbjct: 347 TINYELVTRISPRVTKTY 364 >gi|50122586|ref|YP_051753.1| alanine racemase [Pectobacterium atrosepticum SCRI1043] gi|123614469|sp|Q3V7N2|ALR_ERWCT RecName: Full=Alanine racemase gi|49613112|emb|CAG76563.1| alanine racemase, biosynthetic [Pectobacterium atrosepticum SCRI1043] Length = 360 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 172/374 (45%), Gaps = 23/374 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + I+ AL++N + L+ ++ AVVK NAYG G + A + + Sbjct: 1 MKT---ATAVINRRALRHNLQRIRQLAPGSQIVAVVKANAYGHGMIESAHTFCD--ADCY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E + LR I +L G + ++ + L + S+ QL + + Sbjct: 56 GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSLEQLAALEQ-ATLP 114 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++DTG +RLG+ + A F + + + Q I+SH AD+P + Q Sbjct: 115 QPIRVWMKLDTGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQ 174 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 L F G + S+A+S GILL P H RPGI LYG + N+ Q Sbjct: 175 LACFDAFTQGKPGAQ-SIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + +I +R+ AGE V YGG RD+ + V A+GY DGYP Sbjct: 234 MTFTSHLIAVREHKAGETVGYGGTWTSPRDTRLGVVAVGYGDGYPR-----------CAP 282 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G I G VP+ G+++MDM D+ +VGD + ++GP + ++ +A +G + Y Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLSVERIAAHTGASAY 342 Query: 356 DLLVRIGTRYAKFY 369 +L+ R+ R A Y Sbjct: 343 ELITRLTQRTALEY 356 >gi|126207740|ref|YP_001052965.1| alanine racemase [Actinobacillus pleuropneumoniae L20] gi|166919545|sp|A3MYX4|ALR_ACTP2 RecName: Full=Alanine racemase gi|126096532|gb|ABN73360.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 374 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + + A++K NAYG G A L + V+ F V Sbjct: 2 KPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIPVIS------------SVP 107 + E ++++ +I ++ G +E FDT + Sbjct: 61 LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAEEWQQEQ 120 Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 Q F+ + L++DTG +RLG+ ++ F L + +SH + A Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEQVDMFYQRLKACPLVESISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+P Q+ F S Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DEPDCGYTEKQIAIFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGTWISDKDTKLGVVAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G +VPI+G+++MDM D+ +VGD + +G D+ +++ Sbjct: 299 ---------PEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAQHIGVISYELITKLTPRV 369 >gi|332304651|ref|YP_004432502.1| alanine racemase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171980|gb|AEE21234.1| alanine racemase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 375 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 104/382 (27%), Positives = 180/382 (47%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN----------ARTAAVVKDNAYGLGCEKIAPALYN 54 + + +DL A+++N++ +L ++T AV+K +AYG G A AL + Sbjct: 3 RPISITVDLNAIRHNFNYAQSLGAKPKNGDSLDNVSQTMAVIKADAYGHGAVATARAL-D 61 Query: 55 AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114 V+S+EE V LR + I +L G E + D + V+ Sbjct: 62 GKATLLAVSSIEEAVSLRQNHIKTPILLLEGCFCSSELSVLDDLNLQVVLHNQHQIEELL 121 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 S L++DTG +RLG+S +A N K + ++++H A +D P+ Sbjct: 122 NTSLDEPADVWLKIDTGMHRLGISAADANHTYQTLANSKNVRSIVLMTHFAMSDQPNHTF 181 Query: 175 NSVQLERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q E F L+ + I S A+S+ ++ P H RPGI LYG + +++ Sbjct: 182 FKRQHEDFHNLVKALSTTDQLIPNSAANSAAVMSAPESHGTWNRPGIMLYGISPFDHENT 241 Query: 231 ---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 P+ + ++II +R+ AGE V YG T+ S+IA A GY DGYP Sbjct: 242 FSAPLIPAMQFHSKIIALRQVNAGESVGYGATWTATQPSIIATVAAGYGDGYPR------ 295 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347 + G I G + P+ G+++MDM D+T +++GD ++++G ++ +++VA Sbjct: 296 -----TAKSGTPVMINGQIAPLAGRVSMDMLCVDVTKLNKVKIGDDVELWGKELSVNEVA 350 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 + T Y+L+ R+ TR + + Sbjct: 351 QWADTLGYELVTRMPTRAKRIF 372 >gi|317492318|ref|ZP_07950747.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919657|gb|EFV40987.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 356 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R IDL+AL +N + + A+ +VVK NAYG G +I AL F + Sbjct: 3 RPIRATIDLSALTHNLDQIRQQTPEAKIWSVVKANAYGHGLSRIWRALAK--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR Q I +L G Q+ + D + Sbjct: 61 IEEAILLREQGWQGPILLLEGFFQPQDLQLIDRYRLTTTIHNESQLQILGRARLSAPVDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V+TG +RLG ++ + H++ +++H A AD+ L F Sbjct: 121 YLKVNTGMHRLGFMPEQLMAIYHSARALPNVDHITLMTHFANADNHLG--VESPLAAFNA 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 LA+S+ L H RPGI LYG + ++ V++ + Sbjct: 179 AAVDISA-PRCLANSAATLWHQPTHADWVRPGIVLYGASPTGRWHDIAESHLRPVMSLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I+ +G+ V YG + + + I + A GYADGYP G Sbjct: 238 EIIAIQNIQSGDSVGYGSRYQAVQPQRIGIVACGYADGYPRHA-----------LSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++ G +LG ++MDM D+T ++VG+ ++++G ++ +DDVA ++GT Y+LL Sbjct: 287 WVSGQRTQLLGTVSMDMLAIDLTALPEVQVGESVELWGQNLPVDDVAQSAGTIGYELLCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|114319749|ref|YP_741432.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1] gi|114226143|gb|ABI55942.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1] Length = 365 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 160/367 (43%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R +I L AL++N+ + + + AR AV+K + YG G +++A L F V+ Sbjct: 6 RPTRARIRLEALRHNYRLLRSSAPGARVMAVIKADGYGHGIDRVARTLAGE-ADCFAVSG 64 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 V+E + +R + +L G + + PV+ S Q+ + S Sbjct: 65 VDEAMPIRAAGATQPVVLLGGFFAAAEIPLHVREGFQPVVHSWWQVEALAS-AGPHESLD 123 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++VD+G +RLG E + + ++HLA ADD S QL F Sbjct: 124 VWIKVDSGMHRLGFLPGEVAEVHRRLTALPNLRQIGFLTHLAEADDRDSPRTLEQLRVFD 183 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEA 240 + G S A+S+G L P H+ RPGISLYG + I++ P V+T E+ Sbjct: 184 QACAGLPG-PRSAANSAGTLGWPAAHYDWVRPGISLYGASPFIDQGRPRPDLRPVMTLES 242 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I +++ AG + YG + + V AIGY DGYP G Sbjct: 243 GLISVKRLPAGAPIGYGSTWRCPEAMPVGVVAIGYGDGYPRHA-----------PSGTPV 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG+++MD+ D+ G + ++G + + +A +GT Y+L + Sbjct: 292 RVDGVESQLLGRVSMDLITVDLRPCPEARPGAPVVLWGDGLPAETIAERAGTIAYELYCQ 351 Query: 361 IGTRYAK 367 + R + Sbjct: 352 VTPRAPR 358 >gi|148243246|ref|YP_001228403.1| alanine racemase [Synechococcus sp. RCC307] gi|147851556|emb|CAK29050.1| Alanine racemase [Synechococcus sp. RCC307] Length = 395 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 111/371 (29%), Positives = 173/371 (46%), Gaps = 24/371 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + L+ID A++ N + +LS AVVK + YG G +A A + G F V Sbjct: 20 QQRAWLEIDRDAIRYNTAQLKGSLSPGCALMAVVKADGYGHGAVTVAEAALDGGASSFGV 79 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ EG++LR +A I VL P + + L P ISS+ Q S + G Sbjct: 80 ATLAEGIELRQAGIEAPILVLGNLQQPEEFRCCLHWQLSPTISSLRQGLIGSNVGVAGGK 139 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++DTG RLG+ Q+ ++ + SHLA AD+P +N+ Q E Sbjct: 140 PLLAHLKLDTGMARLGIDWQQGPKLLEELQQLDGLSIAGVYSHLADADNPDGLLNATQQE 199 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQT 234 RF ++ + +E LA+S+G L P H+ + R G+SLYG + + K P++ Sbjct: 200 RFEAVLRRFHELELKPGLRHLANSAGTLSSPELHYDMVRVGLSLYGHSPAAHLKQLPLRP 259 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ A++ L+R AG VSYG Q TR S +AV IGYADG LSG Sbjct: 260 AMSVHAKVTLLRDVPAGAGVSYGHQFHTTRPSRLAVLGIGYADGVSRRLSGQM------- 312 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + +G +P +G ITMD + D TD +++GD + + G I + Sbjct: 313 ----EVLAEGRRLPQVGAITMDQIVIDATDLPELDIGDSVTLLGSSGSETIGPQAWSDVC 368 Query: 351 GTTNYDLLVRI 361 + +++L Sbjct: 369 QSIPWEVLCSF 379 >gi|254252040|ref|ZP_04945358.1| Alanine racemase [Burkholderia dolosa AUO158] gi|124894649|gb|EAY68529.1| Alanine racemase [Burkholderia dolosa AUO158] Length = 356 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG S ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYSPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G LA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAG-TRCLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQSIAKGQSIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAARVP 352 >gi|253702117|ref|YP_003023306.1| alanine racemase [Geobacter sp. M21] gi|259710067|sp|C6E5Z6|ALR_GEOSM RecName: Full=Alanine racemase gi|251776967|gb|ACT19548.1| alanine racemase [Geobacter sp. M21] Length = 379 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 114/389 (29%), Positives = 178/389 (45%), Gaps = 32/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S ++IDL AL++N+ + AVVK +AYG G + ++ L GV Sbjct: 1 MDS-RPTVVEIDLAALRHNFSLVQKRVPEGCGLLAVVKADAYGHGFQYVSEELEKLGVDA 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLM 116 F V + EGV+LR+ + +L GI+PG+E+ + N+ + S+ L + + Sbjct: 60 FAVAFLAEGVQLRMSGITRPVLILGGIYPGEERRLIGLNISTALFSLEQAAALDQAALEI 119 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173 C L+VDTG RLG+ E +F K +L I SH A AD+ Sbjct: 120 KCYRKAHIHLKVDTGMGRLGVPYHEVPEFLAKLKQFKNLELEGIFSHFASADELDPEGIA 179 Query: 174 VNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--I 226 +Q ERF + Y +A+S+ IL + L RPGI LYG Sbjct: 180 FTRLQAERFNAAVEEARRQGYAPSYVHVANSAAILAQDLPYCNLARPGIILYGALPSGDF 239 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 P Q V+ ++R+ +++ G +SYG + T +LIA +GYADGY +L+ Sbjct: 240 EGQVPSQPVMRLKSRVAMLKWVEPGTSISYGRRYVATERALIASVPVGYADGYCRSLTN- 298 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----I 341 G+ I+G + G + MD M D+T+ + VGD + + GPD I Sbjct: 299 ----------KGEALIRGQRAKVAGTVCMDWIMLDVTNVKGVAVGDDVTLLGPDPMGDCI 348 Query: 342 KLDDVALASGTTNYDLLVRI-GTRYAKFY 369 +++A +GT Y++L I R + Y Sbjct: 349 SAEEMAEKAGTIPYEVLCGIATRRVRRVY 377 >gi|34497370|ref|NP_901585.1| alanine racemase [Chromobacterium violaceum ATCC 12472] gi|34103226|gb|AAQ59589.1| alanine racemase [Chromobacterium violaceum ATCC 12472] Length = 356 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 162/368 (44%), Gaps = 17/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I L L++N+ A G+ R AV+K NAYG G + A AL + F V Sbjct: 2 RPLIATIRLDHLRHNYLQARAAHGD-RALAVLKANAYGHGAVRCAQALADI-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR I +L G+ +E D + + + + + + + Sbjct: 60 LEEALELRAAGIANPILLLEGVFDAEELKAVDEHGLWMAVTSEEQLSMVEQSNPSRPFNV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +D+G +R G + H ++H A AD+P + QLE F Sbjct: 120 WLMLDSGMHREGFLPENYHQAWHRLQASGKAGGITKMTHFARADEPEIPMTFAQLEAFDA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 + + S+A+S+GIL P R GI+LYG T + ++ V+ ++ Sbjct: 180 AVRGLPAGDESVANSAGILCHPRAQRNWGRVGIALYGVTPLPAGFGQGDALRPVMRFSSK 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + +R+ GE + YG R + + + A GYADGYP S G Sbjct: 240 VFGVRELGVGEPIGYGDNFVTERPTRVGLVACGYADGYPRRAS-----------SGSPAL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G ++G+++MDM D+TD ++ VG ++++G + +++VA +GT Y+ L + Sbjct: 289 VDGQRTRLIGRVSMDMLTVDLTDLPAVGVGSEVELWGDGVSVNEVAAHAGTIGYEPLCNV 348 Query: 362 GTRYAKFY 369 R Y Sbjct: 349 -KRARFVY 355 >gi|86748627|ref|YP_485123.1| alanine racemase [Rhodopseudomonas palustris HaA2] gi|86571655|gb|ABD06212.1| alanine racemase [Rhodopseudomonas palustris HaA2] Length = 388 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 201/373 (53%), Gaps = 18/373 (4%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 H + L IDL A++ N+ + + R VVK +AYGLG ++APALY AG +DF Sbjct: 5 HRHAGATLTIDLAAIRWNYRRLAEMVGPKVRCGGVVKADAYGLGARQVAPALYGAGCRDF 64 Query: 61 FVTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 +V ++E + LR + P A I VL G+ G E D ++PV++S+ QL + + Sbjct: 65 YVAHLDEALDLRPHLPPDASIVVLNGLPRGGEDDCADAGIVPVLNSLAQLDDWSACARKA 124 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G +Q+D+G +RLGLS +E + + + + L++SHLACAD N+ Q Sbjct: 125 GRVLGAIVQIDSGMSRLGLSPRELDEL--SHARLRGIDIRLVMSHLACADVADHAANAYQ 182 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 RF L + GI SLA+SSGI LGP++H+ RPG +LYG ++ +PM+ VV Sbjct: 183 RARFCALADRFGGIPKSLANSSGIFLGPDFHYDAARPGAALYGINPTSSRPNPMRPVVRL 242 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A I+ R+ AG+ V YG ++ R S +A +IGYADG L G Sbjct: 243 AAAIVQTREIEAGDHVGYGWDFRVERPSRLATLSIGYADGLHRALG-----------RAG 291 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYD 356 + +G + I G+++MD D+ D + + G I++ GP +D++A ASGT Y+ Sbjct: 292 AVYFEGRALAIAGRVSMDSITVDLGDLPAERLGRGAEIELIGPHQSVDELASASGTIGYE 351 Query: 357 LLVRIGTRYAKFY 369 +L +G R+ + Y Sbjct: 352 ILTSLGDRFRRIY 364 >gi|29831510|ref|NP_826144.1| alanine racemase [Streptomyces avermitilis MA-4680] gi|29608626|dbj|BAC72679.1| putative alanine racemase [Streptomyces avermitilis MA-4680] Length = 391 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 106/390 (27%), Positives = 164/390 (42%), Gaps = 33/390 (8%) Query: 1 MHSNE----FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + E R +IDL AL+ N ++ A + A AVVK +AYG G A A AG Sbjct: 1 MTTRETAPLRARAEIDLAALRANVRTLRAHAPAAALMAVVKSDAYGHGAIPCARAAVEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKL 115 + EE + LR RI + G + D ++ +S + Sbjct: 61 ATWLGTATPEEALALRAAGLPGRIMCWLWVPGGPWREAIDADIDLGVSGLWALREVVEAA 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172 G L+ DTG R G ++ + + L +++ + SHLACAD+P Sbjct: 121 AGAGAPARVQLKADTGLGRNGCQPEDWPGLVAEALRAEAAGLVRVTGLWSHLACADEPGH 180 Query: 173 HVNSVQLERFRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 QL FR ++ + +G+ +A+S L P+ HF L R GI++YG + Sbjct: 181 PSIEAQLALFRQMVAYAERQGVRPEVRHIANSPATLTLPDSHFDLVRTGIAVYGISPSPE 240 Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ V+T A + L++ G VSYG + + + +GYADG P Sbjct: 241 LGVPADFGLRPVMTLAASLALVKHVPGGHGVSYGHHYVTPGATTLGLVPVGYADGIPRHA 300 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---- 339 SG G I G + G+I MD + D+ G +FGP Sbjct: 301 SGS-----------GPVLIGGKWRTVAGRIAMDQFVVDLGGDEP-GAGAEAVLFGPGDRG 348 Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +D A A+GT Y+++ RIGTR + Y Sbjct: 349 EPTAEDWAKAAGTIAYEIVTRIGTRVPRVY 378 >gi|306832114|ref|ZP_07465268.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425553|gb|EFM28671.1| alanine racemase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 368 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 173/382 (45%), Gaps = 27/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + + IDL A+ N ++ A + + AVVK NAYG G +A A+++ V Sbjct: 1 MISSLHRPTKAVIDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATSVAQAIHHL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L I P + + D ++ ++S L ++ Sbjct: 60 DGFCVSNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ + + + K ++ I +H A AD+ + Sbjct: 120 SLAGLDVHLKVDSGMGRIGVRSLDEAENVIANLKKAGANVAGIFTHFATADEADDTKFNE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QLE F L+++ A + +S+ + F L R GI +YG +++ +P+ Sbjct: 180 QLEFFTNLVNNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++ AG V YG ++ IA IGYADG+ L G Sbjct: 240 KPALSLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G+++MD + + L +G + + G + I D+A Sbjct: 295 -------VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQEGSKAISATDLAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 GT NY++L + R + Y+ Sbjct: 346 KRGTINYEVLCLLSDRIPRVYS 367 >gi|288906075|ref|YP_003431297.1| alanine racemase [Streptococcus gallolyticus UCN34] gi|288732801|emb|CBI14377.1| Putative alanine racemase [Streptococcus gallolyticus UCN34] Length = 368 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 173/382 (45%), Gaps = 27/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + + IDL A+ N ++ A + + AVVK NAYG G +A A+++ V Sbjct: 1 MISSLHRPTKAVIDLDAICQNIDAVKANIPQDKKAFAVVKANAYGHGATSVAQAIHHL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L I P + + D ++ ++S L ++ Sbjct: 60 DGFCVSNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ + + + K ++ I +H A AD+ + Sbjct: 120 SLAGLDVHLKVDSGMGRIGVRSLDEAENVIANLKKAGANVAGIFTHFATADEADDTKFNE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QLE F L+++ A + +S+ + F L R GI +YG +++ +P+ Sbjct: 180 QLEFFTNLVNNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++ AG V YG ++ IA IGYADG+ L G Sbjct: 240 KPALSLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G+++MD + + L +G + + G + I D+A Sbjct: 295 -------VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQEGSKVISATDLAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 GT NY++L + R + Y+ Sbjct: 346 KRGTINYEVLCLLSDRIPRVYS 367 >gi|163789953|ref|ZP_02184389.1| D-alanine racemase [Carnobacterium sp. AT7] gi|159874893|gb|EDP68961.1| D-alanine racemase [Carnobacterium sp. AT7] Length = 390 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 157/383 (40%), Gaps = 26/383 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 S ++I L L +N + LS AVVK + YG G + A A AG Sbjct: 4 ESYRETWVEIALDHLTDNIKAFKGILSPETALMAVVKADGYGHGAIETAKAAIEAGATYL 63 Query: 61 FVTSVEEGVKLRLYTPQARIFV--LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V ++E + LR I V + ++ D + I S + KL Sbjct: 64 AVAFLDEAISLRKAGFSTPILVLGYTSLDTETIEMAIDYGITLTIYSKEAVESIQKLAIQ 123 Query: 119 GVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L++D+G NR+G+ E + I +H + AD S Sbjct: 124 KKKVCRIHLKIDSGMNRIGVRTAEEALQIIAAITSDYLVFEGIFTHFSDADAIESTFVHD 183 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SH 230 Q F ++S + +++ + P H + R GI +YG + + Sbjct: 184 QFNHFMKIVSSIQKKGYTIPIKHCCNTAATIAFPKMHLDMVRIGIGIYGLYPEEHLRTKI 243 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V+T + + ILI++ G+ +SYG T+DS++A +GYADG TLS Sbjct: 244 SLKPVMTFKTKPILIKEVPVGQTISYGRTYTTTKDSIVATIPVGYADGLSRTLSN----- 298 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346 G + G+ PI+G++ MD TM D+T+ + + +FG I + +V Sbjct: 299 ------KGHITVNGHKAPIVGRVCMDQTMVDLTEIDPVYFNEEFVLFGDPLDGAISIGEV 352 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A GT +Y++ IG R + Y Sbjct: 353 ADQMGTIHYEVACLIGKRVPRIY 375 >gi|315122242|ref|YP_004062731.1| alanine racemase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495644|gb|ADR52243.1| alanine racemase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 277/345 (80%), Positives = 305/345 (88%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 LSG ARTAAVVKDNAYGLG EKIA LYN+GVQDFFV V EGVKLR Y P+A+IFVLYG Sbjct: 4 LSGCARTAAVVKDNAYGLGFEKIAQTLYNSGVQDFFVAHVGEGVKLRAYVPKAKIFVLYG 63 Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145 IHPG+EKI+FD NLIPVISS QLTFY KLMS G SHPYALQVDTGFNRLGLSLQEAL+F Sbjct: 64 IHPGEEKILFDANLIPVISSSQQLTFYLKLMSNGFSHPYALQVDTGFNRLGLSLQEALNF 123 Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205 N NKK +LSLI+SHLAC++DP S +NS QLE+F TL+ YKGIEASLASS+GILLG Sbjct: 124 AKNFSNKKSDKLSLIMSHLACSEDPVSLMNSSQLEQFLTLMKSYKGIEASLASSAGILLG 183 Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265 NYHFQLTRPGISLYGGT INK +PMQTVVTAEARIILIR+A AGE++SYGGQKKL R+ Sbjct: 184 ENYHFQLTRPGISLYGGTPAINKLNPMQTVVTAEARIILIREAAAGEVISYGGQKKLKRN 243 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 SLIAVAAIGYADGYPLTLSG+D EH+ + F GGKGFIKGYMVPILGKITMD+TMFDITDS Sbjct: 244 SLIAVAAIGYADGYPLTLSGIDLEHNQAQFPGGKGFIKGYMVPILGKITMDITMFDITDS 303 Query: 326 LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 + IE GDYI++FGP+IKLDDVALAS TTNYDLLVRIGTRYA+FYT Sbjct: 304 IGIEAGDYIEVFGPNIKLDDVALASRTTNYDLLVRIGTRYARFYT 348 >gi|260466737|ref|ZP_05812923.1| alanine racemase [Mesorhizobium opportunistum WSM2075] gi|259029467|gb|EEW30757.1| alanine racemase [Mesorhizobium opportunistum WSM2075] Length = 379 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 179/365 (49%), Gaps = 17/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A++ N+ + A G R A VVK + YGLG ++A AL G FFV + EG Sbjct: 25 LTIDLGAIRENYRRLKAQLGGVRCAGVVKADGYGLGATQVASALMKDGCDTFFVALLAEG 84 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 + LR I+VL G+ PG E L VI+S QL + G P A+ Sbjct: 85 ISLRKAIGAGPDIYVLNGLPPGSEPEAVAAGLCAVINSGAQLKAWRAAAHGAGRQLPAAI 144 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVD+G +RLG++ E ++ + + + SHLACAD+P N Q F L Sbjct: 145 QVDSGMSRLGMAPAEVEAVVEDTGAFEGIDVRYVTSHLACADEPRHPANEQQRLAFERLR 204 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + ASLA+SSGI LGP YH+ L RPG +LYG + ++PM VV +A++ R Sbjct: 205 ALLPAAPASLANSSGIFLGPRYHYDLARPGAALYGINPTPDATNPMLPVVGLQAKVAQTR 264 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YG +A + GYADG+ + +G Sbjct: 265 GIEKGTGVGYGHTYHAEGPRSLATISFGYADGWLRR-------------SASAAWFEGVR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P LG+++MD + D++ + GD +++ GP +DD A +GT Y++L +GTR Sbjct: 312 LPFLGRVSMDSIILDVSALSPGKLREGDLVELLGPAQSVDDAAGHAGTIGYEILASLGTR 371 Query: 365 YAKFY 369 + + Y Sbjct: 372 FHRRY 376 >gi|304392032|ref|ZP_07373974.1| alanine racemase [Ahrensia sp. R2A130] gi|303296261|gb|EFL90619.1| alanine racemase [Ahrensia sp. R2A130] Length = 378 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 192/363 (52%), Gaps = 4/363 (1%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R+ IDL ALK N+ + L+ A AVVK N YG G E + PAL++AG + FFV E Sbjct: 12 RVTIDLDALKANYTHLAKLAAPAECGAVVKANGYGCGIEVVVPALWDAGCRTFFVAVSSE 71 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 G+++ P AR F+L G+ G E + D LIP + SV Q+ ++ G P A+ Sbjct: 72 GLRVMKTAPDARCFILNGLFTGAENALADAGLIPCLGSVTQIENWAATAKQRGTPLPCAI 131 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +D+G NRLGLS E + L ++H ACADD Q ERF Sbjct: 132 HMDSGMNRLGLSYDELARTVEQPHLMDHLDVQLFMTHYACADDIGHPQTEAQRERFLQGA 191 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 G+ S A+S+ L ++ F L RPGI+LYGG + +PM+ VVT E R++ R Sbjct: 192 DLLPGVPRSAANSAADLQATDHTFDLARPGIALYGGEALNDVDNPMRPVVTLEGRVVQTR 251 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YG + +TR + +A + GYADGY S V KG+ Sbjct: 252 WVERGGAVGYGASETMTRRTRLAYVSTGYADGYHRAASNFGVPMRF-VAPAAVTHYKGHT 310 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + +G+I+MD+ FD+TD I GD+I++FG ++ +DDVA A+GT Y+LL +G R Sbjct: 311 LKGVGRISMDLAAFDVTDMPDDAIGEGDWIELFGNNVPVDDVARAAGTIGYELLTGLGAR 370 Query: 365 YAK 367 YA+ Sbjct: 371 YAR 373 >gi|332291955|ref|YP_004430564.1| alanine racemase [Krokinobacter diaphorus 4H-3-7-5] gi|332170041|gb|AEE19296.1| alanine racemase [Krokinobacter diaphorus 4H-3-7-5] Length = 365 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 157/371 (42%), Gaps = 21/371 (5%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL+IDL AL++N+ + + + + AVVK YG +A L GV F V V Sbjct: 4 TRLEIDLAALRHNYSYLRKKVAPSVKMMAVVKAFGYGSDAGAVAQELEMLGVDYFAVAYV 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 EG+ LR I VL+ P + + L P I S+ + ++ ++P Sbjct: 64 SEGIALRDAGITTPILVLHP-QPDTFDELIERCLEPSIYSIRMMELFTAFAKGKGQENYP 122 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182 L+ +TG NRLG + +++ + SHL ++DP Q+ +F Sbjct: 123 IHLKFNTGLNRLGFLNTDVSWILDRLRENVSVKVASLFSHLVASEDPAEEEFTLNQILQF 182 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + ++SG++ HF R GI LYG + + ++ V Sbjct: 183 TNISKELLQALDYVPFMHMTNTSGVINYHRAHFDCVRIGIGLYGYGNSKEDTKKLKPVAR 242 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ I I G+ + Y K T + + A IG+ADG +L Sbjct: 243 LKSVISQIHHIKPGQSIGYNRAYKATEEIVTATLPIGHADGISRSLGNGV---------- 292 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 G I G PI+G + MDM M DIT S + GD +++FG + +A + +Y+L Sbjct: 293 GYVMIAGQKAPIVGNVCMDMLMVDITGI-SCKEGDDVEVFGETTSAETLAGEMQSISYEL 351 Query: 358 LVRIGTRYAKF 368 L IG R + Sbjct: 352 LTAIGQRVKRV 362 >gi|218133145|ref|ZP_03461949.1| hypothetical protein BACPEC_01007 [Bacteroides pectinophilus ATCC 43243] gi|217992018|gb|EEC58022.1| hypothetical protein BACPEC_01007 [Bacteroides pectinophilus ATCC 43243] Length = 395 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 27/376 (7%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 I+L ++ N ++ AL+ + AVVK +AYG G +A A+ + V + V +VEE Sbjct: 13 ADINLDNIEYNVRALMALTKPGTKAMAVVKADAYGHGDVAVAKAVNDI-VDAYAVATVEE 71 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G+ LR + I VL + + IPV + + ++ G + + Sbjct: 72 GINLRQNGIEKMILVLGYVDEMHYDQVIRYALSIPVFDTEMAKKMSAAAVAAGENIRCHV 131 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTL 185 +VDTG +R+GL + T + K G I +H A AD+ Q E F+T Sbjct: 132 KVDTGMHRIGLRPDDDGIKTVLALAKYDGLDVEGIFTHFATADEKDKTAAYRQFELFKTF 191 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 + ++S+GI+ P+ + + R GI++YG SH + + + Sbjct: 192 VEKLENEGMHFKYRHCSNSAGIIDMPDVNMDMVRLGIAMYGMYPSEEVSHDVVELKPAIE 251 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ + +++ GE VSY G + R + +A GY DGYP +LS Sbjct: 252 LKSSVTMVKTIQPGERVSYNGTFEAKRVTRLATIETGYGDGYPRSLSN-----------K 300 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I+G PI G++ MD M D+TD + D + + G D I ++++A +GT Sbjct: 301 GYVLIRGRKAPITGRVCMDQFMVDVTDIPDVGRLDEVTLIGRDGNEYISVEEIAALAGTF 360 Query: 354 NYDLLVRIGTRYAKFY 369 NY+ + +G R + Y Sbjct: 361 NYEFVCDLGKRIPRNY 376 >gi|261855604|ref|YP_003262887.1| alanine racemase [Halothiobacillus neapolitanus c2] gi|261836073|gb|ACX95840.1| alanine racemase [Halothiobacillus neapolitanus c2] Length = 378 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 167/368 (45%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL AL++N ++ + A VK +AYG G +A AL + V F V + Sbjct: 19 RRPELTIDLAALRHNAAVARQVAKGRKLLAAVKADAYGHGMATVARALRD-RVDGFMVAT 77 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + EG LRL R+ VL G+ E + + + G+ Sbjct: 78 LGEGEALRLAGITQRVLVLQGVMSQAEARRAARRFLEPVFHHASQIDAVGTVGFGLPLTA 137 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERFR 183 L++DTG +R+G + +E + +++H ACAD+P Q+ F+ Sbjct: 138 WLKLDTGMHRVGFTPEEFAQAYARLSALRGVRPNPNVLTHFACADEPDRAPTDDQITLFK 197 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEA 240 + G E SL +S+G+L P+ RPGI LYGG I ++ V+T Sbjct: 198 QTTTECSG-ETSLCNSAGLLAYPHAGGDWVRPGIMLYGGNPFITGTAADWDLKPVMTLTT 256 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YGG+ + V +IGY DGYP G Sbjct: 257 QLIAVREVQAGERVGYGGKFTAPATMPVGVVSIGYGDGYPRHAPN-----------GTPI 305 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MD+ D+ +VGD +Q +G + +D+VA A+GT +Y+L+ + Sbjct: 306 VVNGQRSQVIGRVSMDLVTVDLRGI-QAQVGDTVQCWGDQLPIDEVAQAAGTISYELMCQ 364 Query: 361 IGTRYAKF 368 + R + Sbjct: 365 MSGRVTRR 372 >gi|157372681|ref|YP_001480670.1| alanine racemase [Serratia proteamaculans 568] gi|157324445|gb|ABV43542.1| alanine racemase [Serratia proteamaculans 568] Length = 359 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 173/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + + +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + P + Sbjct: 62 EALMLRSGGIVKPILMLEGFFCAEDLPVLVANNIETAVHSIEQLEALEQATLARPVPVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S + + Q I+SH + AD+P S Q++ F + Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACRNVVQPVNIMSHFSRADEPESDTTLKQIQCFESF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEARI 242 + G + S+A+S G LL P+ H + RPGI LYG + +T ++ + Sbjct: 182 AAGKPG-QRSIAASGGTLLWPDAHNEWVRPGIILYGVSPMEGSQGCQYDLQPAMTLKSNL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG D+ + V A+GY DGYP + G ++ Sbjct: 241 IAVREHKAGESVGYGGTWVSAGDTRLGVVAMGYGDGYPRSA-----------PTGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI+G+++MDM D+ + +VGD + ++G + ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVPIVGRVSMDMMSVDLGPEATDKVGDEVVLWGQALPVERIADCTGISAYELITKLT 349 Query: 363 TRYAKFY 369 R + Y Sbjct: 350 QRVSMEY 356 >gi|16125907|ref|NP_420471.1| alanine racemase [Caulobacter crescentus CB15] gi|221234670|ref|YP_002517106.1| alanine racemase [Caulobacter crescentus NA1000] gi|20137228|sp|Q9A7Q9|ALR_CAUCR RecName: Full=Alanine racemase gi|13423069|gb|AAK23639.1| alanine racemase [Caulobacter crescentus CB15] gi|220963842|gb|ACL95198.1| alanine racemase [Caulobacter crescentus NA1000] Length = 364 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 200/371 (53%), Gaps = 14/371 (3%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + R+ IDL AL +N+ ++ A +G+A A VK +AYGLG +A L+ G + F Sbjct: 1 MTDAQDTRITIDLDALAHNYAALRARAGDAEVAPAVKADAYGLGAAPVADRLWAEGARSF 60 Query: 61 FVTSVEEGVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 +V + EGV LR A I+VL G PG + + L+PV++S+PQ+ ++ Sbjct: 61 YVARLAEGVALRRSLGDREATIYVLDGATPGSGEALEGAQLVPVLNSLPQVEAWNVQARS 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G AL +DTG NRLGL +E + K + L++SHLACAD P +N+ Q Sbjct: 121 GR-LRAALHIDTGMNRLGLRPEELKVLVGSFDRLKRLDVELVVSHLACADTPEHPLNATQ 179 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 L RF+ + G+ SLA+S G+ LG Y F TRPG+SLYGG + ++ V T Sbjct: 180 LARFQEAAALLPGVRRSLANSGGLFLGEAYRFDQTRPGVSLYGGGPEGRPHPEIRAVATV 239 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 EA I+ +R GE + YG + ++ +A+ A GYADG P F G Sbjct: 240 EAPILQVRVVPRGESIGYGAGWTASDNTRVAIVAAGYADGVPRAA-----------FPRG 288 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + + G P+LG+++MD+ D+TD + G +++FG ++ +DD A A+GT+ Y+ L Sbjct: 289 EVWFDGARRPMLGRVSMDLIAVDVTDCDAARPGAMVELFGANLPVDDAADAAGTSAYERL 348 Query: 359 VRIGTRYAKFY 369 R+ R + Y Sbjct: 349 TRLTLRGVRRY 359 >gi|15892051|ref|NP_359765.1| alanine racemase [Rickettsia conorii str. Malish 7] gi|20137218|sp|Q92JD9|ALR_RICCN RecName: Full=Alanine racemase gi|15619170|gb|AAL02666.1| alanine racemase [Rickettsia conorii str. Malish 7] Length = 355 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+L+ +KNN+ + + + A VK N YGLG +I+ AL + FFV S EEG Sbjct: 6 VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 66 VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGLS E ++ K L IISHLA +++ + N QL RF+ + Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG VT +A II ++ Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTK------NPVTLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADG+ S G+ FI Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MD+ D+TD E+ G +I G D +A GT Y++L +G+R Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRKY 353 >gi|194467667|ref|ZP_03073654.1| alanine racemase [Lactobacillus reuteri 100-23] gi|194454703|gb|EDX43600.1| alanine racemase [Lactobacillus reuteri 100-23] Length = 375 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 152/375 (40%), Gaps = 28/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L ++L AL++N + N++ AVVK NAYG G +A +G V ++E Sbjct: 11 LIVNLDALRHNIQEQKKVLPENSKILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGVSHPY 124 ++LR +A VL I + + + Q +++ Sbjct: 71 ALELRDNGIEAMTLVLGITPVEDALIAAQAGVSLTVGSLDWLEQYHRLAQVAKPKKPLKV 130 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +D+G R+G + + + + + +H A AD P + + Q++R+ Sbjct: 131 HLGIDSGMGRIGFTAVDTFKQAVKLLDNPEFEFEGMFTHFATADSPDENYFNQQVQRWHQ 190 Query: 185 LISHYKGIEASLA--SSSGILLGPN-YHFQLTRPGISLYGGTDK---INKSHPMQTVVTA 238 ++ + + +S+ L R GIS+YG + + +Q V + Sbjct: 191 FVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRDLKLTLDLQPVSSL 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I +++ AG VSYG +D +A IGYADGYP ++G Sbjct: 251 VSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY------------ 298 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 K + G I G++ MD M + + G + + G +I D+A +GT N Sbjct: 299 KVLVDGQFCDIAGRVCMDQMMVRLPKYYPV--GTPVVLMGKSGDQEITATDLAEQAGTIN 356 Query: 355 YDLLVRIGTRYAKFY 369 Y++L I R + Y Sbjct: 357 YEILTNISNRVHRIY 371 >gi|260584704|ref|ZP_05852450.1| alanine racemase [Granulicatella elegans ATCC 700633] gi|260157727|gb|EEW92797.1| alanine racemase [Granulicatella elegans ATCC 700633] Length = 371 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 160/379 (42%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R+ + L A+K N ++ N AVVK NAYG G ++A A + GV F + Sbjct: 6 HRNTRVIVHLNAIKQNIKAVKDHYPNTDIFAVVKANAYGHGMMEVAKAAHEEGVAGFCIA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR Q I +L I+ D + +SS+ L L+ G Sbjct: 66 LLDEAIQLRQEGFQEPILILGISRLEDVPILCDYRISTTVSSLDWLEKAQTLIPDGKQLI 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181 L +DTG R+G+ E + + Q I +H A AD+ + QL+ Sbjct: 126 VHLAIDTGMGRIGVRTPEQVQEIEQFLREHDSQFVFEGIFTHFATADEADTSQFEQQLKS 185 Query: 182 FRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-----INKSHPMQT 234 F + + ++S+ + + R GI LYG + + P++ Sbjct: 186 FNECVEALEQRPTYVHCSNSAAAIWHEGLTTNVIRWGIGLYGLNPSNGGLRLPDTLPLEK 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T E I+ +++ AG+ +SYG + D IA +GYADGY Sbjct: 246 ALTWETEIVFVKQLHAGDTISYGATYTCSDDEWIATLPVGYADGYLRA------------ 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 + G+ + G PI+G++ MD M + I VG + + G + I ++++ S Sbjct: 294 YAPGEVIVSGVRCPIVGRVCMDQCMIRLP--YEIPVGTKVTLLGKNGNERITAEELSHRS 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y+ L I R + Y Sbjct: 352 HTISYESLCLISDRVPRSY 370 >gi|290967925|ref|ZP_06559475.1| alanine racemase [Megasphaera genomosp. type_1 str. 28L] gi|290782064|gb|EFD94642.1| alanine racemase [Megasphaera genomosp. type_1 str. 28L] Length = 399 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 156/385 (40%), Gaps = 29/385 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + + +IDL A N + L +VVK NAYG G ++A G Sbjct: 11 TKRPVWAQIDLDAAIANIRGIRRLVGPQVCVTSVVKANAYGHGAIELAKVFLGHGADQVA 70 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 V + E V+LR RI +L + + + + P + +S+ Sbjct: 71 VACLGEAVELRQGGITGRILILGHTDGHRAEELTAYGVEPTVFRYEDALRFSRAAQAQHR 130 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNS 176 + + VDTG R+G + QL + +H A +D Sbjct: 131 TVNIHIAVDTGMGRIGYEPNANGIREIQAIAALPGLQLEGVFTHFAVSDSNTPADRAYTQ 190 Query: 177 VQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q + F ++ + + SSSG+L +H + RPGI YG Sbjct: 191 AQYQCFTKFLTALAEVGIRPVYTHCCSSSGLLSQTAFHQNMVRPGILQYGYHPSGTVACT 250 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 S Q V++ I ++ G+ +SYG + T+++ IA +GYADGYP LS Sbjct: 251 SFTPQPVMSLRCCITHVKWVHKGQYISYGRHFQATKETCIATIPVGYADGYPRLLSNR-- 308 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 + + G VP +G I MD M D+TD ++++GD +FG + L+ Sbjct: 309 ---------TEVLVHGRRVPQVGNICMDQCMIDVTDVPNVQIGDEAVLFGTQGEGSLPLE 359 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A A GT ++++L I R + Y Sbjct: 360 ELAAAIGTIDHEILCNINRRVPRVY 384 >gi|315498295|ref|YP_004087099.1| alanine racemase [Asticcacaulis excentricus CB 48] gi|315416307|gb|ADU12948.1| alanine racemase [Asticcacaulis excentricus CB 48] Length = 376 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 187/364 (51%), Gaps = 15/364 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L++DL ALK N+ + L+ +AVVK +AYGLG + ++ L+ G + FFV E Sbjct: 18 LRVDLGALKANYLKLCQLAAPTPVSAVVKADAYGLGVKAVSATLHAVGCRHFFVALTREA 77 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126 +LR + P A ++VL G+ PG E + LIPV+ Q + + G + P L Sbjct: 78 FELRSHLPTDAALYVLNGLTPGSEARAAEARLIPVLDCPEQLDAWAAVARQRGQTLPALL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVDTG +RLG ++ + ++ ++SHLACAD+P++ N QLE F Sbjct: 138 QVDTGMSRLGFMPEDLKALATAQERLQGLRIDYLMSHLACADEPANPANGQQLEAFEMAS 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + A+S G+ LG YH L RPGI+LYG +++ +PMQ V+ + ++ R Sbjct: 198 RLFPDTPLCFANSGGLFLGAEYHADLCRPGIALYGAAPHLDRPNPMQPVIALDLAVLQTR 257 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG + YGG +A + GYADG P L G + KG Sbjct: 258 TVPAGTRIGYGGTVVTDAPKRLATLSAGYADGLPRRLGDQ-----------GAVYFKGTR 306 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P +G+++MD + DI ++ GD++++ GP LD VA A+GT Y++L ++G R Sbjct: 307 LPFIGRVSMDSIIIDIDALPEGTLKTGDFVELIGPHQSLDAVAEAAGTIAYEILTQLGPR 366 Query: 365 YAKF 368 Y + Sbjct: 367 YHRH 370 >gi|238789907|ref|ZP_04633687.1| Alanine racemase 1 [Yersinia frederiksenii ATCC 33641] gi|238721980|gb|EEQ13640.1| Alanine racemase 1 [Yersinia frederiksenii ATCC 33641] Length = 359 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 172/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFTAEDLPILVANRIETAVHSIEQLEALEAATLSAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S + + Q I+SH + AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACRNVIQPVNIMSHFSRADEPKVETTRQQLDCFDTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 G + S+A+S GILL P H RPGI LYG + + + ++ + Sbjct: 182 AKDKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYGSHFNLLPAMELKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G +I Sbjct: 241 IAVREHKAGEPVGYGGTWVSKRDTRLGVVAIGYGDGYPRSA-----------PSGTPMWI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + +VGD + ++G ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVGIVGRVSMDMISVDLGPDATDKVGDEVLLWGAELPVEKIAARTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|71899103|ref|ZP_00681267.1| Alanine racemase [Xylella fastidiosa Ann-1] gi|71731097|gb|EAO33164.1| Alanine racemase [Xylella fastidiosa Ann-1] Length = 369 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ L G + AVVK +AYG G + A AL V F V Sbjct: 9 RPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGFAVAC 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR QA I +L G +E + + + + + Sbjct: 67 IEEALELRQVGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGV 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGL +E D + + ++++HLA AD+ + + Q F Sbjct: 127 WLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFAH 186 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 AS+ +SSG+L + RPG+ LYG + S P++ V+ + Sbjct: 187 ASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYS 245 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG R + + V A+GYADGYP G Sbjct: 246 KLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPL 294 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y LL Sbjct: 295 LVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCG 354 Query: 361 IGTRYAKFY 369 + R ++Y Sbjct: 355 L-KRVRRYY 362 >gi|284006501|emb|CBA71762.1| alanine racemase (biosynthetic) [Arsenophonus nasoniae] Length = 361 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 176/368 (47%), Gaps = 18/368 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 I AL++N + ++ ++R AVVK NAYG G + A + + F V + Sbjct: 4 ATAVIHRRALRHNLQRVREIASHSRIIAVVKANAYGHGLLETAHTVKDL-ADSFGVARIS 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G E I + I ++ + + + + Sbjct: 63 EAIALRENGISNPILLLEGFFDLAELPIITRHAIDIVVQSIEQLETLEQIKLEKPIKVWM 122 Query: 127 QVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRT 184 ++DTG +RLG +EA + + + + I+SH + AD+P + QL F Sbjct: 123 KLDTGMHRLGFRPEEAAISYARLVACQNIQKPINIMSHFSRADEPGLPAATNQQLTCFNV 182 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 I G E S+A+S+GILL P +F RPGI +YG + + K + V+T ++ Sbjct: 183 FIKDKPG-EKSIAASAGILLWPASYFDWVRPGIMMYGASPQEGKQGKDFGLLPVMTLKSN 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I IR+ AGE V YGG +D+ + V AIGY DGYP G Sbjct: 242 LIAIRQHKAGEPVGYGGVWVSEQDTNLGVVAIGYGDGYPRNA-----------PSGTPIL 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G VPI+G+++MDM D+ + +VGD ++G + +++VA +G ++Y+LL ++ Sbjct: 291 INGRKVPIVGRVSMDMISVDLGVGTNDKVGDEAIMWGDLLPVEEVAAYTGVSDYELLTKL 350 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 351 TSRVAMEY 358 >gi|255657417|ref|ZP_05402826.1| alanine racemase [Clostridium difficile QCD-23m63] gi|296449013|ref|ZP_06890803.1| alanine racemase [Clostridium difficile NAP08] gi|296879836|ref|ZP_06903809.1| alanine racemase [Clostridium difficile NAP07] gi|296262106|gb|EFH08911.1| alanine racemase [Clostridium difficile NAP08] gi|296429125|gb|EFH14999.1| alanine racemase [Clostridium difficile NAP07] Length = 385 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 153/376 (40%), Gaps = 24/376 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I+L L+ N +++ L + + V+K +AYG G ++A L V V Sbjct: 7 PTWAEINLDNLRFNLNNIKNLLEEDIKVCGVIKADAYGHGAVEVAKLLEKEKVDYLAVAR 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 EG++LR I L + + + S+ +++ G Sbjct: 67 TAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKAC 126 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G R+G +E++ + L + +H A AD+ S Q + Sbjct: 127 VHVKIDSGMTRIGFQPNEESVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNY 186 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 + + +++S+ I+ P+ + R GI LYG + ++ Sbjct: 187 KFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRP 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + +++I I++ G +SYG + T I IGYADG+ Sbjct: 247 AMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIVTIPIGYADGFTRIQKNP-------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTT 353 K IKG + ++G+I MD M I + I+VGD + +FG ++ + +A GT Sbjct: 299 ----KVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTI 354 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L I R + Y Sbjct: 355 NYEVLCMISRRVDRVY 370 >gi|291536141|emb|CBL09253.1| alanine racemase [Roseburia intestinalis M50/1] Length = 389 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58 M+ + +IDL A+ +N +M ++ + + AV+K + YG G +IA + Sbjct: 1 MNRYSRVHAEIDLDAILHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDYLY 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + V +VEEG+ LR + Q I +L + P Q + + P + + S + Sbjct: 61 GYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAAAS 120 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +DTG +R+G + +EA D + I +H A AD+ Sbjct: 121 IGRDCKIHFAIDTGMSRIGYQVTEEAADEMAQLSKLPHIIVEGIFTHFAKADEKDKEPTY 180 Query: 177 VQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230 Q++ FR +I + ++S+GI+ P + + R GI+LYG + Sbjct: 181 QQIKLFRKMIDMLEERGVSILIHHCSNSAGIVDIPEANMDMVRAGITLYGMWPSEDVDKT 240 Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ ++ + +++ AG +SYGG +IA +GYADGY LS Sbjct: 241 AISLKPALSLVTHVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGYADGYARGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PILG++ MD M D+TD ++ D + + G D I ++ Sbjct: 298 --------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVILIGRDGDECITME 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +V SG NY+ +G R + Y Sbjct: 350 EVGGLSGRFNYEFACDLGKRIPRVY 374 >gi|240147271|ref|ZP_04745872.1| alanine racemase [Roseburia intestinalis L1-82] gi|257200543|gb|EEU98827.1| alanine racemase [Roseburia intestinalis L1-82] Length = 389 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 165/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58 M+ + +IDL A+ +N +M ++ + + AV+K + YG G +IA + Sbjct: 1 MNRYSRVHAEIDLDAILHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDYLY 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + V +VEEG+ LR + Q I +L + P Q + + P + + S + Sbjct: 61 GYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAAAS 120 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +DTG +R+G + +EA D + I +H A AD+ Sbjct: 121 IGRDCKIHFAIDTGMSRIGYQVTEEAADEMAQLSKLPHIIVEGIFTHFAKADEKDKEPTY 180 Query: 177 VQLERFRTLI----SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSH- 230 Q++ FR +I I S+S ++ P + + R GI+LYG + Sbjct: 181 QQIKLFRKMIDMLEERGVSIPIHHCSNSAGIVDIPEANMDMVRAGITLYGMWPSEDVDKT 240 Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ ++ + +++ AG +SYGG +IA +GYADGY LS Sbjct: 241 AISLKPALSLVTHVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGYADGYARGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PILG++ MD M D+TD ++ D + + G D I ++ Sbjct: 298 --------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVILIGRDGDECITME 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +V SG NY+ +G R + Y Sbjct: 350 EVGGLSGRFNYEFACDLGKRIPRVY 374 >gi|291538997|emb|CBL12108.1| alanine racemase [Roseburia intestinalis XB6B4] Length = 389 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 165/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-Q 58 M+ + +IDL A+ +N +M ++ + + AV+K + YG G +IA + Sbjct: 1 MNRYSRVHAEIDLDAILHNMDAMRGNIAKDTKIMAVIKADGYGHGAVEIAETIEKLDYLY 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + V +VEEG+ LR + Q I +L + P Q + + P + + S + Sbjct: 61 GYAVATVEEGLILRNHGIQKPILILGYVFPDQYVDMIKAGIRPTVFTREMAEKLSVAAAS 120 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +DTG +R+G + +EA D + I +H A AD+ Sbjct: 121 IGRDCKIHFAIDTGMSRIGYQVTEEATDEMAQLSKLPHIIVEGIFTHFAKADEKDKEPTY 180 Query: 177 VQLERFRTLI----SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSH- 230 Q++ FR +I I S+S ++ P + + R GI+LYG + Sbjct: 181 QQIKLFRKMIDMLEERGVSIPIHHCSNSAGIVDIPEANMDMVRAGITLYGMWPSEDVDKT 240 Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ ++ + +++ AG +SYGG +IA +GYADGY LS Sbjct: 241 AISLKPALSLVTHVAYVKELPAGRAISYGGTYVTKEPRMIATIPVGYADGYARGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PILG++ MD M D+TD ++ D + + G D I ++ Sbjct: 298 --------KGAVLIHGRRAPILGRVCMDQFMVDVTDIPDVKNEDEVILIGRDGDECITME 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +V SG NY+ +G R + Y Sbjct: 350 EVGGLSGRFNYEFACDLGKRIPRVY 374 >gi|320547461|ref|ZP_08041747.1| alanine racemase [Streptococcus equinus ATCC 9812] gi|320447806|gb|EFW88563.1| alanine racemase [Streptococcus equinus ATCC 9812] Length = 368 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 170/382 (44%), Gaps = 27/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + R IDL A+ N ++ A + AVVK NAYG G +K+A A+++ V Sbjct: 1 MISSLHRPTRALIDLGAICQNIEAVKANIPEGKKAFAVVKANAYGHGAKKVAQAVHHL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++V+E ++LR + I +L I P + + D ++ ++S L + Sbjct: 60 DGFCVSNVDEALELREAGIEETILILGVIMPNEVALARDYDITLTVASQEWLDLAIEQDI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ + + + K + I +H A AD+ + Sbjct: 120 SLKGVKVHLKVDSGMGRIGVRSLDEAENLIANLKKAGASVEGIFTHFATADEADDTKFNE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QLE F ++ + A + +S+ + F + R GI +YG I +P+ Sbjct: 180 QLEFFTNIVDNLSDKPALVHASNSATSIWHSETIFNIVRLGIVMYGLNPSGTDIELPYPI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++ AG V YG ++ IA IGYADG+ L G Sbjct: 240 KPALSLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + I+G+++MD + + +G + + G + I D+A Sbjct: 295 -------VLVNGQVCEIVGRVSMDQITIRLPEKFP--IGTKVTLIGQEGDKVISATDLAK 345 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 GT NY++L + R +FY+ Sbjct: 346 KRGTINYEVLCLLSDRIPRFYS 367 >gi|113475275|ref|YP_721336.1| alanine racemase [Trichodesmium erythraeum IMS101] gi|110166323|gb|ABG50863.1| alanine racemase [Trichodesmium erythraeum IMS101] Length = 395 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 176/381 (46%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+ AL N + +L S + VVK +AYG G KI+ + AGV V Sbjct: 24 QRAWVEINDRALSYNVQQLKSLLSAKTQLMGVVKADAYGHGASKISKTILEAGVDRLAVA 83 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-S 121 ++ EG++LRL + I +L I P Q + I L P I + Q +S+ +S Sbjct: 84 TLPEGIELRLAGIKPPILILGAIDRPEQIRAIAHWQLEPTICTPQQALVFSETLSYQTEP 143 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG +RLG Q+A++F +++ I SHLA AD+ V Q +R Sbjct: 144 MLVHLKLDTGMSRLGTPWQQAVEFVKFVQGLPNLKIASIYSHLATADNLDQTVMKQQHQR 203 Query: 182 FRTLISHY--------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHP 231 F I I+ LA+S+ L P H+ + R G+++YG + Sbjct: 204 FEEAIGLCGIGGKSFSSDIQLHLANSAATLTDPALHYDMVRVGLAIYGLYPAPHLQDKIN 263 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+ +AR+ ++ AG VSYG Q + +AV IGYADG P LS Sbjct: 264 LKPVMQVKARVTQVKTIEAGTGVSYGYQFIAPKQMRLAVVGIGYADGLPRNLSNRM---- 319 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 K ++ ++P +G ITMD M D++ +E G+ + + G I ++ A Sbjct: 320 -------KVIVRDRLIPQVGAITMDQLMLDVSAIPDLETGEVVTLLGQVGKHQISAENWA 372 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 GT ++++L R + Sbjct: 373 NTLGTISWEILCGFKNRLPRV 393 >gi|285019694|ref|YP_003377405.1| alanine racemase [Xanthomonas albilineans GPE PC73] gi|283474912|emb|CBA17411.1| probable alanine racemase protein [Xanthomonas albilineans] Length = 357 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 162/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L G + AVVK +AYG G A AL F V Sbjct: 2 RPARALIDLDALRHNYCLARRL-GGGKVLAVVKADAYGHGAVACARALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR A I +L GI E + + + + + P Sbjct: 60 IEEALELRQAGIAAPILLLEGIFEADELPLVAAHRLWCVVASPWQVEAIAAFDAPQPLCL 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGL+ + +++SH A AD+ S Q+E FR Sbjct: 120 WLKLDSGMHRLGLAPDAFRAAHARLSALPQVERLVLMSHFARADELESARTLEQVEVFRQ 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 + G E SL +S +L P H RPG+ LYG ++ V+T +++ Sbjct: 180 TTADLAG-EISLCNSPALLGWPQVHSDWARPGLMLYGADPFAAAAALPGELRPVMTLQSK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R GE V YG + R + + V AIGYADGYP S G Sbjct: 239 VIAVRDLAPGEPVGYGARFVAPRPTRVGVVAIGYADGYPQFASN-----------GTPVL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+T+ +G +Q++G ++D +A ++ Y LL + Sbjct: 288 IDGMPGELIGRVSMDMLTVDLTEHPQAGLGSVVQLWGAQPRIDALAARCASSAYRLLCGL 347 Query: 362 GTRYAKFY 369 R + Y Sbjct: 348 -KRAPRHY 354 >gi|319952867|ref|YP_004164134.1| alanine racemase [Cellulophaga algicola DSM 14237] gi|319421527|gb|ADV48636.1| Alanine racemase [Cellulophaga algicola DSM 14237] Length = 375 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 101/377 (26%), Positives = 152/377 (40%), Gaps = 21/377 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + L+I+LTAL++N+ + +S + VVK AYG IA L G Sbjct: 1 MAKAQETVLEINLTALEHNYRYLKTKISSKTKFLGVVKAFAYGSDAVSIAQKLVALGADY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMS 117 V EEGV LR + I VL+ I + L P + S LT + + Sbjct: 61 LAVAYTEEGVSLRNAGIKIPILVLHPQIVS-FDTIIERCLEPNLYSERILTAFITAAERH 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 +P L+ +TG NRLG + ++ ++ I SHLA ++D Sbjct: 120 QQKIYPIHLKFNTGLNRLGFNAKDIPSIVKKLSETTAVKVLSIFSHLAASEDLEEKDFTL 179 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q++ F + + LA++SGI+ P HF + R GI LYG + I++ Sbjct: 180 NQIKNFNIISTQIDAALPYIPFKHLANTSGIINYPEAHFDMVRSGIGLYGFGNDIDEDKN 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 V T + I I E V Y + A +G+ADG Sbjct: 240 FIPVATLKTNISQIHYLEPNESVGYNRAFTSNKKIKTATLPLGHADGIGREYGNG----- 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G + GY PI+G MDM M D+TD GD + +FG + A + Sbjct: 295 -----KGVVCVHGYYAPIIGNTCMDMIMVDVTDI-DCSEGDEVIVFGNKPTATEFAAGAN 348 Query: 352 TTNYDLLVRIGTRYAKF 368 T +Y++L I R + Sbjct: 349 TISYEVLTGISQRVKRV 365 >gi|134296048|ref|YP_001119783.1| alanine racemase [Burkholderia vietnamiensis G4] gi|134139205|gb|ABO54948.1| alanine racemase [Burkholderia vietnamiensis G4] Length = 356 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 150/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++ + +++H + AD + QL F Sbjct: 121 QLKMNSGMNRLGYQPEKYRAAWERARACPAIGQITLMTHFSDADTERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + +Q +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSADIADTGLQPTMTLTS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAPARMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGVRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNTLPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|194289835|ref|YP_002005742.1| alanine racemase [Cupriavidus taiwanensis LMG 19424] gi|226711038|sp|B3R2F9|ALR_CUPTR RecName: Full=Alanine racemase gi|193223670|emb|CAQ69677.1| alanine racemase 2, PLP-binding [Cupriavidus taiwanensis LMG 19424] Length = 373 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 160/367 (43%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + + +AR AVVK NAYG G ++ AL G F + Sbjct: 3 RPIQAVIHQPALANNLDVIRRKAPDARVWAVVKANAYGHGIRRVFAALR--GADGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E V LR Q I +L G P +I L I QL G Sbjct: 61 LNEAVLLRDLGWQGPILLLEGFFQPQDIALIEQYRLTTAIHCDEQLRMLESARPKG-PLA 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NRLG E + + ++H + AD P + Q+E F Sbjct: 120 IQLKLNTGMNRLGFHPAEYRAAWERARAMPCVGSIVHMTHFSDADGPRGI--AHQVEAFD 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 ++ G EASL++S+ +L P H RPGI LYG + +Q ++ Sbjct: 178 AATANLPG-EASLSNSAAVLWHPQAHRAWVRPGIILYGASPTGRDADIAGTGLQPAMSLH 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G+ V YG R I V A GYADGYP SG + +P Sbjct: 237 SELIAVQDLQPGDTVGYGSLFTAERPMRIGVVACGYADGYPRHASGWGEQRAP------- 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+T VG + ++G + +D+VA ASGT Y+L+ Sbjct: 290 VLVDGVRTELVGRVSMDMLCVDLTPCPKARVGSPVTLWGQGLPIDEVAQASGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALAPRVP 356 >gi|295110109|emb|CBL24062.1| alanine racemase [Ruminococcus obeum A2-162] Length = 388 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 158/385 (41%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + ++ + L A+ +N+ M ++ + AV+K + YG G E IA + + + Sbjct: 1 MKKFDRVKAVVSLDAIAHNFEEMKKNIAEGTKIVAVIKADGYGHGAEAIARLIEDYEYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + + EE ++LR I +L + K + + + S+ Sbjct: 61 GYATATPEEALQLRDAGIDKPILILGIVFEEYYKELIAHEVRMTVCEYEMAAALSEEAVR 120 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + +DTG +R+G + E+++ ++ + +H A AD+ Sbjct: 121 QGRQVHIHIGLDTGMSRIGFADVPESVETIKKIAALPNVEIEGMFTHFARADETDRSPAI 180 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 QL R+ + + ++S+GI+ P + R GI++YG Sbjct: 181 TQLNRYLAFTELLEKAGVEIPMKHCSNSAGIIRVPEANLNAVRAGITIYGIYPSNEVERD 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + ++ + ++ AG +SYGG +D +A +GYADGYP +LS Sbjct: 241 IVKLIPAMELKSHVSYVKDLPAGTPISYGGTFASEKDLRVATIPVGYADGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PI+G++ MD M D+TD ++ GD + + G D I ++ Sbjct: 298 --------KGWVLIHGQKAPIIGRVCMDQFMVDVTDIPEVKHGDEVTLIGKDGEEFISIE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 SG +Y+ I R + Y Sbjct: 350 TFGDLSGRFSYEFACDISKRVPRVY 374 >gi|330992271|ref|ZP_08316219.1| Alanine racemase [Gluconacetobacter sp. SXCC-1] gi|329760470|gb|EGG76966.1| Alanine racemase [Gluconacetobacter sp. SXCC-1] Length = 382 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 137/365 (37%), Positives = 205/365 (56%), Gaps = 14/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I L A+ N+ + A +G A AAVVK +AYGLG ++AP L AG + FFV +EEG Sbjct: 22 LEISLGAVAANYRLLRARTGQATCAAVVKADAYGLGAHQVAPVLEQAGAKVFFVAHLEEG 81 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 ++LR + +P A+IFVL+G PG E+ L+PV++S+ Q+ + + + P AL Sbjct: 82 IRLRPHVSPTAQIFVLHGPMPGTERAFTHHALLPVLNSMEQIAGWRAHASKAQHALPAAL 141 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVDTG +R GLS + + L++SHLACAD P+S N++Q +R R + Sbjct: 142 QVDTGMSRFGLSDADVTALADTPALLDGIETRLVMSHLACADTPASPANALQRDRLRAMA 201 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +L++SSGI LGP+YHF L RPG +LYG + +P+Q V +ARI+ R Sbjct: 202 ARLPAAPLALSASSGIFLGPDYHFDLVRPGAALYGLAPNADAPNPLQPTVRLQARIVQRR 261 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG+ V YG + IA IGYADG+ GG ++ Y Sbjct: 262 TIKAGDGVGYGLTWHASGPRRIATLGIGYADGFLRQ----------GASNGGCAWLDSYR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PILG+I+MD T D+T ++ ++ + GP +DDVA A+GT Y++L +G+R Sbjct: 312 LPILGRISMDSTTVDVTGVPESVLDQATHVDMIGPRRSVDDVAHAAGTIGYEVLTALGSR 371 Query: 365 YAKFY 369 + + Y Sbjct: 372 FHRVY 376 >gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170] gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170] Length = 823 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 148/370 (40%), Gaps = 22/370 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G ++A L V V +E Sbjct: 464 LEINLNALVDNLNYYRNKLKPETKLMCMVKASAYGAGPFEVAKTLEEHRVDYLAVAVADE 523 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126 G LR I ++ + + + GV + P + Sbjct: 524 GADLRKAGITCPIVIMNPEATAFKTMFAYRLEPNIYGFPILEEMIKAAEREGVSNFPIHI 583 Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 ++DTG +RLG S Q+ + + SHLA +D + Q+E F Sbjct: 584 KIDTGMHRLGFSPHQDMQRLVERLHRQSAVIPRSVFSHLAGSDSERFDAFTRKQIETFEA 643 Query: 185 LISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + I + +++GI P F + R GI LYG N H + V T + Sbjct: 644 AAAELQAGFGVKILRHVCNTAGIERYPGAQFDMVRLGIGLYGIDPFTN--HILHNVSTLK 701 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I A E V Y + L RDS IA IGYADG L Sbjct: 702 TTILQIHDIPADETVGYSRKGVLYRDSRIATIPIGYADGLNRHLGNGH----------AY 751 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG D+ + +A A GT Y++L Sbjct: 752 CLVNGKKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLAEALGTIPYEILT 810 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 811 SVSNRVKRVY 820 >gi|320539399|ref|ZP_08039068.1| alanine racemase 1, PLP-binding, biosynthetic [Serratia symbiotica str. Tucson] gi|320030524|gb|EFW12534.1| alanine racemase 1, PLP-binding, biosynthetic [Serratia symbiotica str. Tucson] Length = 359 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 108/367 (29%), Positives = 176/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID +AL++N + + + A+VK NAYG G + A L + F V+ + Sbjct: 4 ATAVIDRSALRHNLQQVRRQAPQSHLIAIVKANAYGHGMLETAHTLQD--ADCFGVSRIS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + P + Sbjct: 62 EALALRFGGIVKPILLLEGFFSAEDLPLLVANNIETVVHSSEQLEALEQAKLAHPLPVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + Q I+S +CAD+P S Q+ F Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLCACHNVAQPVNIMSQFSCADEPGSDATLKQIACFEQF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARI 242 G + S+A+SSGILL P+ H Q RPGI LYG + N + H +Q +T ++ + Sbjct: 182 ARGKPG-QRSIAASSGILLWPDAHNQWVRPGIILYGVSPLDNANGSQHLLQPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R LAGE V YGG RD+ + V AIGY DGYP + ++ Sbjct: 241 IAVRDHLAGEPVGYGGTWISQRDTRLGVVAIGYGDGYPRSA-----------PTCTPIWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI+G+++MDM D+ + +VGD ++G + ++ +A+ +G + Y+L+ ++ Sbjct: 290 NGREVPIVGRVSMDMISVDLGPDATDKVGDEAVLWGQALPVERIAIYAGISVYELVTKLT 349 Query: 363 TRYAKFY 369 R A Y Sbjct: 350 QRVAMEY 356 >gi|148543492|ref|YP_001270862.1| alanine racemase [Lactobacillus reuteri DSM 20016] gi|184152900|ref|YP_001841241.1| alanine racemase [Lactobacillus reuteri JCM 1112] gi|227363641|ref|ZP_03847755.1| alanine racemase [Lactobacillus reuteri MM2-3] gi|325681836|ref|ZP_08161355.1| alanine racemase [Lactobacillus reuteri MM4-1A] gi|166969414|sp|A5VI51|ALR_LACRD RecName: Full=Alanine racemase gi|226711051|sp|B2G5M9|ALR_LACRJ RecName: Full=Alanine racemase gi|148530526|gb|ABQ82525.1| alanine racemase [Lactobacillus reuteri DSM 20016] gi|183224244|dbj|BAG24761.1| alanine racemase [Lactobacillus reuteri JCM 1112] gi|227071310|gb|EEI09619.1| alanine racemase [Lactobacillus reuteri MM2-3] gi|324978927|gb|EGC15875.1| alanine racemase [Lactobacillus reuteri MM4-1A] Length = 375 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 28/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL AL++N + N++ AVVK NAYG G +A +G V ++E Sbjct: 11 LIVDLDALRHNIQEQKKVLPENSKILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGVSHPY 124 ++LR +A VL I + + + Q +++ Sbjct: 71 ALELRDNGIEAMTLVLGITSVEDALIAAQAGVSLTVGSLDWLEQYHQLAQVAKPKKPLKV 130 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +D+G R+G + A + + + +H A AD P + + Q++R+ Sbjct: 131 HLGIDSGMGRIGFTEVAAFKQAVKLLDSPEFEFEGMFTHFATADSPDENYFNQQVQRWHQ 190 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHF-QLTRPGISLYGGTDK---INKSHPMQTVVTA 238 ++ + + +S+ L R GIS+YG + + +Q V + Sbjct: 191 FVASLAELPPYVHMANSATGLWHRETITANTIRMGISMYGQNPSGRDLKLTLDLQPVSSL 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I +++ AG VSYG +D +A IGYADGYP ++G Sbjct: 251 VSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY------------ 298 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 K + G I G++ MD M + + G + + G +I D+A +GT N Sbjct: 299 KVLVDGQFCDIAGRVCMDQMMIRLPKYYPV--GTPVVLMGKSGDQEITATDLAERAGTIN 356 Query: 355 YDLLVRIGTRYAKFY 369 Y++L I R + Y Sbjct: 357 YEILTNISNRVHRIY 371 >gi|46201989|ref|ZP_00208341.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1] Length = 371 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 145/365 (39%), Positives = 201/365 (55%), Gaps = 14/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L ID+ A+ NW ++AL A +AVVK + YGLG E IAPAL AG Q FFV V EG Sbjct: 11 LTIDVAAIVANWKRLSALVAPAEASAVVKADCYGLGMEHIAPALSAAGCQSFFVACVNEG 70 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP-YALQ 127 + LR P A I VL G G E NLIPV++S+ Q+T ++ G P A+ Sbjct: 71 IALRRILPAAVIHVLSGPLGGDEGEFAAHNLIPVLNSLAQITGWAGFAKKGSGAPAAAIH 130 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGLS E + L++SHLACADD S +N+ QL R L S Sbjct: 131 IDTGMNRLGLSETELERLAAKPEITAAIRPILVMSHLACADDADSPMNARQLTTLRRLAS 190 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 H + S+A+SSGI LG +H L RPG +LYG + +PM VV + +I+ +R Sbjct: 191 HLPALPQSIAASSGIFLGRGFHLGLVRPGAALYGLNPMPGRPNPMSQVVKLQGKIVQVRD 250 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 + + V YG ++ +AV A+GYADG+ +LS G G I G V Sbjct: 251 VDSPQTVGYGATHRVEGKRKLAVVAVGYADGWFRSLSNR-----------GHGMIGGMKV 299 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P+ G+I+MD+T FD+TD + G +I++ GPD+ D VA +GT Y++L +G R+ Sbjct: 300 PVAGRISMDLTTFDVTDVPAEHAHPGAWIELIGPDLSPDRVADEAGTIGYEILTSLGRRH 359 Query: 366 AKFYT 370 + +T Sbjct: 360 HRRWT 364 >gi|284929657|ref|YP_003422179.1| alanine racemase [cyanobacterium UCYN-A] gi|284810101|gb|ADB95798.1| alanine racemase [cyanobacterium UCYN-A] Length = 400 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 105/376 (27%), Positives = 163/376 (43%), Gaps = 23/376 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++IDL AL N + L S AVVK + YG G +A + AG V Sbjct: 26 QRAWMQIDLDALTYNVTQIKNLLSTGTALMAVVKADGYGHGGVTVAKTVLKAGANALAVA 85 Query: 64 SVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121 ++ EG++LR + I VL P + NL I + Q S+ +S Sbjct: 86 TLMEGIELREAGVNSPILVLGVTNTPEEVVANIHWNLEATICCLEQAFMISRTLSQYKKQ 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG +RLG + +LS I SHL+ +DDP +Q +R Sbjct: 146 LSVHLKLDTGMSRLGTPWYQGTRLIKLVHKLPYLKLSGIYSHLSASDDPDKESIELQHQR 205 Query: 182 FRT---LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVV 236 F T + + A+S+ + P H+ L R G++LYG + ++ ++ Sbjct: 206 FETVVSDLKNQNKFCLHFANSAATINYPQLHYNLVRVGLALYGIYPSPHLRSQVSLKPIL 265 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +A+I I+ G VSYG Q +IA+ +IGYADG P LS Sbjct: 266 QVKAKITQIKTISQGTKVSYGNQFTSKHSMIIAIVSIGYADGVPRNLSNRL--------- 316 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + I G +G ITMD + D++ I+VGD + + G D I +D AL GT Sbjct: 317 --QVLIHGQRAHQIGAITMDQLILDVSHVKDIKVGDIVTLIGKDGEQEITANDWALELGT 374 Query: 353 TNYDLLVRIGTRYAKF 368 ++++L R + Sbjct: 375 ISWEILCGFKRRLPRV 390 >gi|149918225|ref|ZP_01906717.1| alanine racemase [Plesiocystis pacifica SIR-1] gi|149820985|gb|EDM80392.1| alanine racemase [Plesiocystis pacifica SIR-1] Length = 402 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 27/380 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +D AL +N ++ A G R AVVK + YG G + A A +AG V+ Sbjct: 32 RPTWASVDEGALAHNLRTVQAHVGERCRVLAVVKADGYGHGAVESARAFVDAGAWGLAVS 91 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121 VEEGV+LR + +A + VL G+HPG E +I L PV+ S + S + Sbjct: 92 LVEEGVELRQHGVRAPVLVLSGVHPGSEDVIVHGALTPVVWSPQHFQLLTSAVRRSGAAT 151 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG--QLSLIISHLACADDPSSHVN-SVQ 178 P +++DTG +RLG+ ++ ++ +++H ACADD + + Q Sbjct: 152 LPVHIKIDTGMSRLGVLPEDLGALLDWYQAHAASELRIEGVMTHFACADDAEDALTSARQ 211 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM- 232 LERF+ + + +S+G++ H + RPGI+LYG P Sbjct: 212 LERFQACLRVLGERRIHPSIRHVCNSAGLVRFSEAHLDMVRPGIALYGAGSSRAVELPEL 271 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + +R++ IR+ AG VSYG ++ L R S + + +GY DGYP T+SG Sbjct: 272 RMAMGVHSRLLGIRELPAGTAVSYGHRQVLDRPSRLGIVPVGYGDGYPRTMSGR------ 325 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I+G+ P++G ITMD++M D+T+ G+ + + G I L ++A Sbjct: 326 -----AQMLIRGHRCPVVGNITMDLSMVDVTELPDAREGERVTLMGTQGRERIDLYELAD 380 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 + Y++ + R + Sbjct: 381 WAQLIPYEVTCGLSKRVPRR 400 >gi|87122505|ref|ZP_01078385.1| biosynthetic alanine racemase [Marinomonas sp. MED121] gi|86162298|gb|EAQ63583.1| biosynthetic alanine racemase [Marinomonas sp. MED121] Length = 359 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 165/368 (44%), Gaps = 16/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL A+K+N+ L N + AVVK NAYG G ++A L + V F V + Sbjct: 3 RPLTAHIDLAAIKHNYLLAKKLQPNTKAFAVVKANAYGHGAVEVAKYLDDI-VDAFAVAA 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR + I +L G+ E + + + V Q + + Sbjct: 62 IEEAIELREAGVSSPILLLEGVFESAEWQVCENHNFWVAI-ENQTQLTDFIAANIQIDKV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG+ A F + ++++H + ADD S S QL F Sbjct: 121 FLKLDSGMHRLGVQPSSADKFIELLEHNPNVGEVVLMTHFSSADDLDSPATSEQLAVFDQ 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 + + ++ S+A+S+ L RPGI LYG + + ++ +T ++ Sbjct: 181 VHRQFSQLDVSVANSAATLKWQLPEGGWIRPGIMLYGISPFDEISAQELGLKPAMTLTSK 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ GE V Y IA A+GY DGYP + Sbjct: 241 IISLREVKDGEAVGYARAYVAKGQRQIATVAVGYGDGYPRMANHQ-----------TPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 ++ M + G+++MDM D+T+ +VGD + ++G ++DVA S T Y+L+ R+ Sbjct: 290 VEQAMCCLSGRVSMDMITLDVTELGETQVGDEVILWGEKNPVEDVAAHSSTIAYELVTRM 349 Query: 362 GTRYAKFY 369 R + Y Sbjct: 350 TGRAKRQY 357 >gi|312880319|ref|ZP_07740119.1| alanine racemase [Aminomonas paucivorans DSM 12260] gi|310783610|gb|EFQ24008.1| alanine racemase [Aminomonas paucivorans DSM 12260] Length = 372 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 150/377 (39%), Gaps = 24/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+++ L ++ N+ S+ + G A+ VVK NAYG G +A AL AG F V Sbjct: 3 RPTRMEVHLGRIQENYRSIRSHVGARAQVMGVVKANAYGTGMVPVASALREAGCTRFAVA 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 + EE ++LR I V+ + ++ ++ + S+ G Sbjct: 63 TPEEALELRRCGIGDPILVMGASSADAAGELVAQDVAATVADLSFAQVLSREATRQGRPA 122 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + L+VDTG R+G QE + +H A AD+ Q RF Sbjct: 123 RFHLKVDTGMGRIGFLPQELPSLLPELLALGNLDFEGVFTHFATADEERLDYTWTQFRRF 182 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 ++ + +S+ ++ P H RPG+ LYG P Sbjct: 183 GDVLEELRDRGVGVRLRHACNSAALMRCPEMHLDAVRPGVILYGLRPSPGCPVPFPLSPA 242 Query: 238 AEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 E + + +R+ G VSYG + +AV +GY DGY L+G Sbjct: 243 FEVKTSVAALRELPPGSGVSYGLRYVTRGRERLAVLPLGYRDGYVRALAG---------- 292 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + I G+ VP++G I MD + D+T + VGD + + G I+ +++A G Sbjct: 293 -KAEVLILGHRVPVVGTICMDQCLVDVTSLPEVCVGDEVVLLGRQGDRSIEAEEMARWLG 351 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y++ R + Sbjct: 352 TIVYEIPGLFSERVPRV 368 >gi|238650557|ref|YP_002916409.1| alanine racemase [Rickettsia peacockii str. Rustic] gi|259710073|sp|C4K1B0|ALR_RICPU RecName: Full=Alanine racemase gi|238624655|gb|ACR47361.1| alanine racemase [Rickettsia peacockii str. Rustic] Length = 355 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+L+ +KNN+ + + + A VK N YGLG +I+ AL + FFV S EEG Sbjct: 6 VEINLSTIKNNYLLLQDVCKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 66 VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGLS E ++ K L IISHLA +++ + N QL RF+ + Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG VT +A II ++ Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTK------NPVTLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADG+ S G+ FI Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MD+ D+TD E+ G +I G D +A GT Y++L +G+R Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRKY 353 >gi|297538234|ref|YP_003674003.1| alanine racemase [Methylotenera sp. 301] gi|297257581|gb|ADI29426.1| alanine racemase [Methylotenera sp. 301] Length = 358 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 154/364 (42%), Gaps = 18/364 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I L A ++N+ + AV+K NAYG G A A F V Sbjct: 2 SRPAIAHIRLDAFRHNYRVAKQAHAG-KALAVIKANAYGHGAVHCAKA-IEGEADGFAVA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR I +L G E N + ++ Sbjct: 60 CLEEALQLREAGIPEPILLLEGFFEAIELPEIVANDLWIVVHAQWQVEILFAAKLAKPLH 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+GL E + N K ++++H A AD+ SS+ Q+E F+ Sbjct: 120 VWLKMDSGMHRVGLPPDEYVQAYERLKNHKNVGKIVLMTHFANADNVSSNHTLQQIETFQ 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 E SLA+S+ IL TRPGI LYG + ++ V+ ++II Sbjct: 180 NTTQGLSA-EISLANSAAILGWKQAKCDWTRPGIMLYGADPLMKADAKLKPVMQLTSKII 238 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 I GE + YG RD+++ V A GYADGYP + G + Sbjct: 239 SISNVKQGESIGYGSIFTAERDTVVGVVACGYADGYPRSA-----------VTGTPIAVD 287 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G M ++G+++MDM D+TD + +G ++++G + + VA ++GT Y+L Sbjct: 288 GKMTRLIGRVSMDMLFVDLTDIPNATIGSQVELWGNQVSANAVATSAGTIAYELFCN--- 344 Query: 364 RYAK 367 + Sbjct: 345 -VKR 347 >gi|271501945|ref|YP_003334971.1| alanine racemase [Dickeya dadantii Ech586] gi|270345500|gb|ACZ78265.1| alanine racemase [Dickeya dadantii Ech586] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 162/373 (43%), Gaps = 21/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + ID AL++N + ++ +R A+VK NAYG G + A A + + Sbjct: 1 MKT---ATAVIDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGALEAARAFSD--ADGY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ + E + LR I +L G E + + + + + Sbjct: 56 GVSRLSEALVLRAAGITKPILLLEGFFDADELPLLAEHQLETAVHSEEQLAALEQARLPH 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG +RLG+ + A F + Q I+SH AD+P QL Sbjct: 116 PLTVWMKLDTGMHRLGVLPEHADAFYTRLCNCTNVVQPVNIMSHFCRADEPEVDTTQRQL 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VV 236 + F + G S+A+S GILL P H RPGI YG + + Sbjct: 176 DCFDAFVQGKPG-RQSIAASGGILLWPQAHRDQIRPGIIQYGISPLAQGDASQWQLKPAM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +++I +R+ AGE V YG RD+ + V AIGY DGYP Sbjct: 235 TLTSQLIAVREHHAGEPVGYGSNWVSPRDTRLGVVAIGYGDGYPRDAKN----------- 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G ++ G VP+ G+++MDM D+ +VGD + ++G + +++VA +G + Y+ Sbjct: 284 GTPVWVNGREVPLSGRVSMDMLTVDLGPDAQDKVGDEVILWGGPLPVENVAAYNGISAYE 343 Query: 357 LLVRIGTRYAKFY 369 L+ R+ R Y Sbjct: 344 LITRLTARTQLEY 356 >gi|238918209|ref|YP_002931723.1| alanine racemase [Edwardsiella ictaluri 93-146] gi|259710066|sp|C5BCC5|ALR_EDWI9 RecName: Full=Alanine racemase gi|238867777|gb|ACR67488.1| alanine racemase, putative [Edwardsiella ictaluri 93-146] Length = 363 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 109/369 (29%), Positives = 172/369 (46%), Gaps = 20/369 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N+ + + ++R AVVK NAYG G + A L + V + Sbjct: 4 ATAIIDRRALRHNFQQIRKFAPHSRLIAVVKANAYGHGLLETAKILNQ--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + + N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQLQALENAGLERPIRVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + Q +SH +CAD+P S VQL F Sbjct: 122 KLDTGMHRLGVRPEQAEAFYRRLCACPNVAQPVNFMSHFSCADEPDSGRTEVQLACFDDF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV-----VTAEA 240 + G E S+A+S GILL P H + RPGI +YG + + + S +T ++ Sbjct: 182 VRGKTG-EQSIAASGGILLWPQSHRDMVRPGIIMYGVSPQADLSLAADHYGLQPAMTLQS 240 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I +R+ AGE V YGG RD+ + V AIGY DGYP + G Sbjct: 241 SLIAVREHKAGEPVGYGGAWVAQRDTRLGVVAIGYGDGYPRSA-----------PSGTPV 289 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G VPI+G+++MDM D+ + VGD + ++GP + ++ VA +G + Y+L+ + Sbjct: 290 LINGREVPIVGRVSMDMISVDLGPQAADRVGDNVIMWGPGLPVEKVAACTGISAYELITK 349 Query: 361 IGTRYAKFY 369 + +R A Y Sbjct: 350 LTSRVAMEY 358 >gi|307718295|ref|YP_003873827.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM 6192] gi|306532020|gb|ADN01554.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM 6192] Length = 391 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 160/373 (42%), Gaps = 25/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 I L+ L++N + G R A VK +AYG G ++ L GV+ V + EE Sbjct: 8 AVIYLSHLRHNLREIRRRVGEGRMVCAAVKADAYGHGAVEVGKVLVEEGVEMLGVATPEE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 G +L AR+ +L ++ + L + + +++ G + Sbjct: 68 GAEL--AGVGARVLLLGLTDGAGLELAVEAGLELAVGDREYVREVARVARAKGRRVRVHV 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +VDTG R G + +EA+ + +L+ + +H +D+ Q+ERF ++ Sbjct: 126 EVDTGMGRTGCAPEEAVGVVEEVEGAGVLELAGMWTHFPSSDEADDGFTEAQVERFLQVV 185 Query: 187 SHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTAE 239 + A+S GI+ P + RPGISLYG + + V+ Sbjct: 186 GRVRARGISPGLLHAANSGGIIGHPPSWLDMVRPGISLYGYYPSEEQERTLSLLPVMEFV 245 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++++ ++K G VSYG + RD+ IA A GYADGY LS + Sbjct: 246 SQVVFLKKVRKGTPVSYGRTWRAPRDTWIATVAAGYADGYSRLLSSR-----------AE 294 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---IKLDDVALASGTTNYD 356 I+G P++G++ MD M D+ + D + +FGPD +++A GT Y+ Sbjct: 295 VLIRGRRYPVVGRVCMDQFMVDVGPHPRVRRYDRVVLFGPDPSGPSAEELARLVGTIPYE 354 Query: 357 LLVRIGTRYAKFY 369 + + R + Y Sbjct: 355 ITCAVSRRVPRLY 367 >gi|78356590|ref|YP_388039.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218995|gb|ABB38344.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 388 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 156/387 (40%), Gaps = 33/387 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E L +IDL AL++N+ ++ + G R AVVK +AYG G +A L G F V Sbjct: 8 EPLWAEIDLCALRHNFSAVRSHVGKGVRIMAVVKADAYGHGAVAVAHELLRQGADAFGVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR + + P + ++ +I + S + Sbjct: 68 RLDEAVELRENGITQPVLIFGPTPPQKAPLLARYGIIQTVHSDTYAEALQAALLAQQPRR 127 Query: 124 Y---ALQVDTGFNRLGLSLQ------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++VDTG RLG ++ + + + +H A +D Sbjct: 128 RVQVHIKVDTGMGRLGYIATGNGGDVPLGQVFAGFSSRTMLDVCGVFTHFAASDAADPVT 187 Query: 175 NSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 QL F +S + A+S+ ++ P F + RPGI LYG Sbjct: 188 ARRQLAVFEQALSELPAGMRDRLCVHAANSAATMVMPGARFDMVRPGIILYGLRPSAEMD 247 Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ V++ + RI +++ AG VSYG ++IA GYADGY LS Sbjct: 248 TAGFDLRPVMSLKGRIASVKRVPAGFTVSYGHTHVTAAGTVIAAVPAGYADGYSRLLSSC 307 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 G + G + G++ MD TM D+ ++ GD + + G + Sbjct: 308 -----------GTMLVHGRPAAVTGRVCMDQTMIDVGHIDGVQEGDEVVLLGRQGAESVT 356 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 DD A + T NY+++ RI R + Y Sbjct: 357 ADDHARLTSTINYEVVSRILARVPRVY 383 >gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135] gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135] Length = 821 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 151/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRNKLKPETKIVCMVKASAYGAGSFEIAKTLEDQRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR + I ++ K +FD L P + S L K + P Sbjct: 523 GADLRKAGINSSIIIMNPEITA-FKTMFDYRLEPEVYSFHLLEELIKAAEREGVSNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + E + + SHL +D + Q+E F Sbjct: 582 IKIDTGMHRLGFAPSEIPQLVQRLQKQSAVIPRSVFSHLVGSDAERFDAFTRHQIETFEA 641 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG NK V T + Sbjct: 642 ASTTLQEGFKHKIIRHICNTAGIERYPGAQFDMVRLGIGLYGVDPFTNKML--HNVTTLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + A E V Y + LTRDS IA IGYADG L Sbjct: 700 TTILQIHEVPADETVGYSRKGVLTRDSRIAAIPIGYADGLNRHLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSDILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|161524411|ref|YP_001579423.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|189350834|ref|YP_001946462.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|221198343|ref|ZP_03571389.1| alanine racemase [Burkholderia multivorans CGD2M] gi|221208282|ref|ZP_03581286.1| alanine racemase [Burkholderia multivorans CGD2] gi|221215437|ref|ZP_03588401.1| alanine racemase [Burkholderia multivorans CGD1] gi|160341840|gb|ABX14926.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|189334856|dbj|BAG43926.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|221164621|gb|EED97103.1| alanine racemase [Burkholderia multivorans CGD1] gi|221171930|gb|EEE04373.1| alanine racemase [Burkholderia multivorans CGD2] gi|221182275|gb|EEE14676.1| alanine racemase [Burkholderia multivorans CGD2M] Length = 356 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 152/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRYAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYAPEKYRAAWERARACPSIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 ++ G LA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAANIAGAR-CLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQSIGKGQAIGYGSTFSAPAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALSIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAARVP 352 >gi|71901892|ref|ZP_00683951.1| Alanine racemase [Xylella fastidiosa Ann-1] gi|71728346|gb|EAO30518.1| Alanine racemase [Xylella fastidiosa Ann-1] Length = 369 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N+ L G + AVVK +AYG G + A AL V F V Sbjct: 9 RPAHAVIDLDALRHNYRFARRL-GGGKALAVVKADAYGHGAVRCAQALEAE-VDGFAVAC 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR QA I +L G +E + + + + + Sbjct: 67 IEEALELRQAGIQAPILLLEGFFEVEELELIAKHNLWTVIASSWQVRALAAFHSPSPIGV 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLGL +E D + + ++++HLA AD+ + + Q F Sbjct: 127 WLKLDSGMHRLGLEPKEFRDAWMSLHSLPQVGEVVLMTHLARADELDNPRTNEQASVFAH 186 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 AS+ +SSG+L + RPG+ LYG + S P++ V+ + Sbjct: 187 ASQGMVA-PASVCNSSGLLGWAGLYSDWGRPGLMLYGVNPISQESTSLSGPLRPVMMVYS 245 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I +R+ AGE V YG R + + V A+GYADGYP G Sbjct: 246 KLIAVRELPAGEPVGYGASFVTERPTRVGVVAMGYADGYPYFAVN-----------GTPL 294 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + P++G+++MDM D+TD +VG +Q++G + ++A + Y LL Sbjct: 295 LVDGRVCPLIGRVSMDMLTVDLTDHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLSG 354 Query: 361 IGTRYAKFY 369 + R ++Y Sbjct: 355 L-KRVRRYY 362 >gi|225378153|ref|ZP_03755374.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM 16841] gi|225209959|gb|EEG92313.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM 16841] Length = 390 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 102/385 (26%), Positives = 169/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M+ + + IDL+A+ +N +M + + + AV+K + YG G IA + + V Sbjct: 1 MNKHSRVCANIDLSAVMHNMEAMHQNIDPDTKIMAVIKADGYGHGAVPIAKEIEHLDYVY 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + +VEEG+ LR Q I +L I P Q + + + P + ++ S Sbjct: 61 GYAAATVEEGMILRNNGIQKPILILGYIFPDQYEEVIQAEICPSVFTLEMAKELSAAAEK 120 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G VDTG +R+G + +EA D + I +H A AD+ Sbjct: 121 VGKDCRMHFAVDTGMSRIGYQVTEEAADEMAQIAKLPHMIVEGIFTHFAKADEYDKTFTK 180 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+++FR +I+ + ++S+GI + + R GI+LYG Sbjct: 181 EQIQKFRKMIAMMEDRGVSIPVKHCSNSAGIAEIREANMDMVRAGITLYGLWPSEEVDQN 240 Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + V+ + + ++ AG +SYGG RDS IA +GYADGY LS Sbjct: 241 SLDLKPVMELKTHVAYVKDLEAGRAISYGGTFITKRDSRIATIPVGYADGYCRGLSNT-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PI G++ MD M D+TD +++GD + + G D I ++ Sbjct: 299 ---------GSVLIHGKRAPICGRVCMDQFMVDVTDIPDVKIGDEVTLIGRDGDEVITME 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +V SG NY+ + +G R + + Sbjct: 350 EVGSLSGRFNYEFVCVLGKRIPRVF 374 >gi|304312030|ref|YP_003811628.1| Alanine racemase, catabolic [gamma proteobacterium HdN1] gi|301797763|emb|CBL45985.1| Alanine racemase, catabolic [gamma proteobacterium HdN1] Length = 362 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 187/374 (50%), Gaps = 23/374 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R +D++AL++N+ + L+ R A++K +AYG G IA AL + F V Sbjct: 2 SRSTRAVVDISALRHNYQRLRTLAQGRRVMALMKADAYGHGALGIASALPD--ADAFGVA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E V+LR +A I +L G E + V+ + + K S Sbjct: 60 YLGEAVQLREAGVRAPIVLLEGAMAIDELAYAAALDLAVVIHQHEQLQWLKNSSLSRPLT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL-----SLIISHLACADDPSSHVNSVQ 178 L+VDTG +RLG++ EA + +++SHLACAD P + + Q Sbjct: 120 IWLKVDTGMHRLGIAPSEAASVLAELECLQRAPDPKVREVVVMSHLACADLPDHPMTAQQ 179 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 L+ F+ + G + S+A+S+G+LLG ++ F RPGI LYGG+ + ++S ++ V Sbjct: 180 LKAFQEVTRGVGG-QRSIANSAGLLLGDDFGFDWVRPGIMLYGGSPRNDRSAEQLGLRAV 238 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + A II IR AGE V YG RD+ + + A+GY DGYP V Sbjct: 239 MKLVAPIIAIRTVAAGESVGYGASWVAERDTRVGIVAVGYGDGYPRH-----------VR 287 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + G +LG+++MDM D++ + ++GD ++++GP + ++ VA +GT NY Sbjct: 288 AGACVLLHGCECLLLGRVSMDMLAIDLSAV-NAQLGDEVELWGPSLPVERVANWAGTINY 346 Query: 356 DLLVRIGTRYAKFY 369 +L +I R + Y Sbjct: 347 ELFCQITGRVRREY 360 >gi|145596368|ref|YP_001160665.1| alanine racemase [Salinispora tropica CNB-440] gi|189027392|sp|A4XBI0|ALR_SALTO RecName: Full=Alanine racemase gi|145305705|gb|ABP56287.1| alanine racemase [Salinispora tropica CNB-440] Length = 372 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 97/377 (25%), Positives = 155/377 (41%), Gaps = 27/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A++ N + + A AVVK + YG G A A + G V +++ Sbjct: 4 AEVRVDLDAIRENVSWLRS-GSAAELMAVVKGDGYGHGMVPAAHAALDGGADWLGVCTLD 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR + + ++SV Q G Sbjct: 63 EALTLRRAGITVPVLAWLLAPGLPLHEGVTAGIDLGVASVAQLEEMVEAGRVAGRPARLH 122 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERF 182 L++DTG +R G ++ E + + + + SH AD P QL F Sbjct: 123 LKIDTGLSRGGATISEWPELLDAAAKAQADGAVEVVGVWSHFVYADAPGHPTTDRQLAVF 182 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + + LA+S+ L P+ HF L RPG+++YG + + ++ +T Sbjct: 183 HEGLGMVEKAGLRPRYRHLANSAATLTRPDAHFDLVRPGLAVYGLSPVAGERFGLRPAMT 242 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A AR++L ++ AG VSYG R S +AV +GYADG P S Sbjct: 243 ARARVMLTKQVPAGAGVSYGHTYTTDRASNLAVIPLGYADGVPRDASNS----------- 291 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 G + G I G++ MD + D D + GD +FG + DD A A GT Sbjct: 292 GPVQLGGVRRTISGRVCMDQFVLDCGDDP-VAPGDVATLFGTGRDGEPTADDWAEAVGTI 350 Query: 354 NYDLLVRIGT-RYAKFY 369 NY+++ R G+ R + Y Sbjct: 351 NYEIVTRFGSTRVPRCY 367 >gi|88800247|ref|ZP_01115814.1| alanine racemase [Reinekea sp. MED297] gi|88776962|gb|EAR08170.1| alanine racemase [Reinekea sp. MED297] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 165/371 (44%), Gaps = 20/371 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R I +AL +N + + A AV+K NAYG G + A AL F V+ Sbjct: 2 SRGTRALISRSALTHNLGRVRHYAPQANIWAVIKANAYGHGADVAAEALSA--ADGFAVS 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S++E + LR I +L G+ + + + + Sbjct: 60 SLDEAIALRDSGVSHPILLLSGVTQADHWAEAAALGLHCVVHSRTQVEQIRTQTLPSPLS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182 L++D+G +RLGL+ + + ++H+A AD P + Q E F Sbjct: 120 VWLKIDSGMHRLGLTPENVPAAFSALSQVSNVSVIGALTHMASADVPERDNATRQQFEVF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 + + ++ S+ +S+ IL + RPGI LYG T + +Q V+ E Sbjct: 180 QA--ASPATLQTSVGNSATILRHADCVGDWVRPGIMLYGATPTTEASAADYGLQPVMAFE 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A +I +R AGE V YG + + +R + IA A GY DGYP G Sbjct: 238 APVIAVRDIAAGESVGYGHRWQASRPARIATLAAGYGDGYPRHA-----------PDGTP 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 ++ G VPI G+++MD+ D++ ++VGD Q++GP++ +DDVA GT Y+LL Sbjct: 287 VWLGGQRVPIAGRVSMDLITVDVSLLSEEVKVGDMAQLWGPELPVDDVAEHIGTIGYELL 346 Query: 359 VRIGTRYAKFY 369 R+ R K + Sbjct: 347 TRLSLRVPKVF 357 >gi|238752148|ref|ZP_04613630.1| Alanine racemase 1 [Yersinia rohdei ATCC 43380] gi|238709621|gb|EEQ01857.1| Alanine racemase 1 [Yersinia rohdei ATCC 43380] Length = 359 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 171/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPVLVANRIETAVHSIEQLEALEAAELSAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S K + Q I+SH + AD+P QL+ F + Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSDCKNVIQPVNIMSHFSRADEPLIETTRQQLDCFDSF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G + S+A+S GILL P H RPGI LYG + + + ++ + Sbjct: 182 ATGKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFNLLPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G I Sbjct: 241 IAVREHKAGESVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMLI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + +VGD + ++G ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVGIVGRVSMDMISVDLGPDATDKVGDEVLLWGAELPVETIAARTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|325286092|ref|YP_004261882.1| Alanine racemase [Cellulophaga lytica DSM 7489] gi|324321546|gb|ADY29011.1| Alanine racemase [Cellulophaga lytica DSM 7489] Length = 368 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 19/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L L+ N+ + L+ N AVVK AYG +IA + G V E Sbjct: 9 LEINLNYLEQNYKYLKSKLAPNTMFLAVVKAFAYGSDQVQIAKKITELGADYLAVAYTSE 68 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126 GV +R Q I VL+ E+I+ + S+ F S +P L Sbjct: 69 GVAIRKAGIQTPILVLHPQEVNFEEIVAYNLEPSIYSARILDQFIKYTSSINKEDYPVHL 128 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTL 185 + +TG NRLG + +++ SH+A ++D Q+++F+++ Sbjct: 129 KFNTGLNRLGFLKADVPQIVQKIQETTTIKVASAFSHMAASEDLTEKEFTEQQIQKFKSI 188 Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + G+ + ++SGIL P+ HF + R GI LYG + ++ + + + Sbjct: 189 SNTLDGLLCYSPIKHMCNTSGILNYPDAHFNMVRSGIGLYGFGNDAKYDVYLKPIASLKT 248 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I + + V Y K T + A +G+ADG G Sbjct: 249 VISQLHNLDPNQSVGYNMAYKATHKMVTATLPLGHADGIYRIYGNQ----------KGFV 298 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 FI G PI+G MDM M D+T+ + + GD + +F D +A A+GT +Y+L+ Sbjct: 299 FINGKKAPIVGNTCMDMIMVDVTNI-NCKEGDEVIVFNEVHTADALATAAGTISYELVTG 357 Query: 361 IGTRYAKFY 369 I R + + Sbjct: 358 ISQRVNRVF 366 >gi|223041769|ref|ZP_03611961.1| alanine racemase [Actinobacillus minor 202] gi|223017420|gb|EEF15839.1| alanine racemase [Actinobacillus minor 202] Length = 374 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 161/380 (42%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + + A++K NAYG G A L + V+ F V Sbjct: 2 KPATATISQEALRHNIQLIKTFAPKQKLLAMIKANAYGQGLLPAAGTLSDL-VEGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLT------------- 110 + E ++++ +I ++ G + VI + QL Sbjct: 61 LREALEIQETGYTGKIVLVEGFFDREELLKTLSRRFDTVIHCLEQLELLEQVAKEWDEEQ 120 Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 F+ + L++DTG +RLG+ ++ F L +SH + A Sbjct: 121 RKGFWKRKAKIYFPVHIWLKIDTGMHRLGVHPEQVEMFYQRLKACSLVASISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 D+ Q+ F Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DELDCGYTEKQIATFEAATKPYPEHERSISASSGILYWQQAHYDWVRPGIIMHGISPHYE 240 Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 S + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITSLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G VPI+G+++MDM D+ +VGD + +G D+ ++D Sbjct: 299 ---------PEGTPVLVNGRKVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIED 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAKHIGVISYELITKLTPRV 369 >gi|229586333|ref|YP_002844834.1| alanine racemase [Rickettsia africae ESF-5] gi|259710072|sp|C3PMD1|ALR_RICAE RecName: Full=Alanine racemase gi|228021383|gb|ACP53091.1| Alanine racemase [Rickettsia africae ESF-5] Length = 355 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 181/365 (49%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+L+ +KNN+ + + + A VK N YGLG +I+ AL + FFV S EEG Sbjct: 6 VEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + L Sbjct: 66 VNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLSCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGLS E ++ K L IISHLA +++ + N QL RF+ + Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG VT +A II ++ Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTK------NPVTLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADG+ S G+ FI Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MD+ D+TD E+ G +I G D +A GT Y++L +G+R Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRKY 353 >gi|307256278|ref|ZP_07538062.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865242|gb|EFM97141.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 374 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + + A++K NAYG G A L + V+ F V Sbjct: 2 KPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIPVIS------------SVP 107 + E ++++ +I ++ G +E FDT + Sbjct: 61 LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAEEWQQEQ 120 Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 Q F+ + L++DTG +RLG+ ++ F L + +SH + A Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEQVDMFYQRLKACPLVESISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+P Q+ F S Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DEPDCGYTEKQIAIFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPRNAQ- 299 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G +VPI+G+++MDM D+ +VGD + +G D+ +++ Sbjct: 300 ----------EGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAQHIGVISYELITKLTPRV 369 >gi|240949115|ref|ZP_04753463.1| alanine racemase [Actinobacillus minor NM305] gi|240296510|gb|EER47142.1| alanine racemase [Actinobacillus minor NM305] Length = 374 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 162/380 (42%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + + A++K NAYG G A L + V+ F V Sbjct: 2 KPATATISQEALRHNIQLIKTFAPKQKLLAMIKANAYGQGLLPAAGTLSDL-VEGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLT------------- 110 + E ++++ +I ++ G + VI + QL Sbjct: 61 LREALEIQETGYTGKIVLVEGFFDREELLKTLSRRFDTVIHCLEQLELLEQVAKEWDAEQ 120 Query: 111 ---FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 F+ + L++DTG +RLG+ ++ F L +SH + A Sbjct: 121 RKGFWKRKAKIYFPVHIWLKIDTGMHRLGVHPEQVEMFYQRLKACSLVASISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 D+ Q+ F Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DELDCGYTEKQIATFEAATKPYPEHERSISASSGILYWQQAHYDWVRPGIIMHGISPHYE 240 Query: 228 K--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 S + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITSLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWVSPKDTKLGVIAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G VPI+G+++MDM D+ +VGD + +G D++++D Sbjct: 299 ---------PEGTPVLVNGRKVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLQIED 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAKHIGVISYELITKLTPRV 369 >gi|206560472|ref|YP_002231236.1| alanine racemase [Burkholderia cenocepacia J2315] gi|198036513|emb|CAR52410.1| alanine racemase, catabolic [Burkholderia cenocepacia J2315] Length = 356 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAGRVP 352 >gi|319408978|emb|CBI82637.1| Alanine racemase [Bartonella schoenbuchensis R1] Length = 373 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 116/365 (31%), Positives = 193/365 (52%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + ID+ A+ N+ ++ +AVVK NAYG+G EK+APALY AG + FFV ++E Sbjct: 19 VTIDIGAIVANYTALAQHVAPTECSAVVKANAYGIGVEKVAPALYQAGCRTFFVAQIKEA 78 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 ++L+ P + +L G+ P E+ + ++PV++S ++ + P + Sbjct: 79 LQLKNILPSDVTLALLNGLPPAAEEFVAQAGIVPVLNSWHEIESWQILCQEKSKKFPAIV 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E ++ + IISHL+ DD + N QL +T++ Sbjct: 139 QIDTNMNRLGLDQKELQQLIKCPTLFEVADIKYIISHLSNGDDFTHSSNDTQLTTIKTML 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + SLA+S GI LGP+++F L RPGI+LYG + P++ V+ EA++I R Sbjct: 199 AQLPACKVSLANSGGIFLGPDFYFDLVRPGIALYGINLHKKHTVPIKPVLKLEAQVIQSR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G + YGG R S++ +IGYADG+ LS G + KGY Sbjct: 259 FVEEGVPIGYGGSFITRRPSVLTTISIGYADGWMRNLSN-----------KGSVYFKGYK 307 Query: 307 VPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+I+MD + D TD + GD++++ G ++DV++ + T +++L + R Sbjct: 308 LPIVGRISMDSIIVDATDLEHGKPKRGDWVELIGEHQTIEDVSIDANTVPHEILSSLSAR 367 Query: 365 YAKFY 369 + Y Sbjct: 368 CKRIY 372 >gi|307245065|ref|ZP_07527159.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249464|ref|ZP_07531453.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254020|ref|ZP_07535868.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258475|ref|ZP_07540213.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854053|gb|EFM86264.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858538|gb|EFM90605.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306863046|gb|EFM94992.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867480|gb|EFM99330.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 381 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 35/388 (9%) Query: 1 MHSNE----FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M S++ I AL++N + + + A++K NAYG G A L + Sbjct: 1 MKSSKKVMKPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL- 59 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIPVIS------- 104 V+ F V + E ++++ +I ++ G +E FDT + Sbjct: 60 VEGFGVARLREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQV 119 Query: 105 -----SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159 Q F+ + L++DTG +RLG+ ++ F L + Sbjct: 120 AKEWQQEQQKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEKVDMFYQRLKACPLVESIS 179 Query: 160 IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL 219 +SH + AD+P Q+ F S Y E S+++SSGIL H+ RPGI + Sbjct: 180 FVSHFSRADEPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIM 239 Query: 220 YGGTDK--INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 +G + + V+T + +I +R AGE V YGG +D+ + V A+GY D Sbjct: 240 HGISPHYTPITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGD 299 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP G + G +VPI+G+++MDM D+ +VGD + + Sbjct: 300 GYPRNA-----------PEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFW 348 Query: 338 GPDIKLDDVALASGTTNYDLLVRIGTRY 365 G D+ +++VA G +Y+L+ ++ R Sbjct: 349 GKDLLIEEVAQHIGVISYELITKLTPRV 376 >gi|293401062|ref|ZP_06645207.1| alanine racemase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306088|gb|EFE47332.1| alanine racemase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 382 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 157/388 (40%), Gaps = 31/388 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S+ L+IDL+ + +N + L + + A+VK NAYG G A L G+ F Sbjct: 4 SDTRAWLEIDLSKISHNVKEIQKLLPSTSKIMAIVKANAYGHGDVACAKELSRCGIDFFG 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120 V+SV+EG+ LR + I +L P + +LI S+ + GV Sbjct: 64 VSSVDEGISLREGGIREPILILGYTPPVHFHQVIQHDLIQTFLSLDYAKKANAWCKEHGV 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA------DDPSSHV 174 ++VDTG +RLG+ Q+ + + D+ + Sbjct: 124 IMHGHVKVDTGMSRLGIITQQQDYRIEEVKEVYHLPHIAVDGIFSHFSVSDGLDEDNKAY 183 Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 Q+ F ++ + L +S GIL P+ + RPG+ G T Sbjct: 184 TRKQIMLFDQVLKDLEDAGIDVGIRHLQNSYGILNYPDLKYDYVRPGLLFLGATSDDAID 243 Query: 230 HPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + +A I +++ G VSYG R S IA +IGYADGYP ++S Sbjct: 244 TITHPDFQPIMQLKANISMVKTIQPGVCVSYGRHFTSERISRIATVSIGYADGYPRSVSN 303 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDI 341 G + G VPI+G I MD M D+TD ++ GD + +FG + Sbjct: 304 K----------GACALLHGKRVPIIGNICMDQMMLDVTDIEHVKEGDVVTLFGCDGDEKL 353 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +D++ + T N + + R + Y Sbjct: 354 PIDELTRLAQTINNETFCWMSARLPRIY 381 >gi|291545833|emb|CBL18941.1| alanine racemase [Ruminococcus sp. SR1/5] Length = 389 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M E ++ + L A+ +N+ M + + AV+K + YG G IA + + + Sbjct: 1 MKKYERVKALVSLDAIAHNFEEMHKNVKEGTKIIAVIKADGYGHGARAIARLIQDYDYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMS 117 F + EE ++LR + +L + + + ++ IS + + Sbjct: 61 GFATATAEEALELRHAGITKPVLILGLVFEEYYEELAANDIRITISDLNTAAEYAKAGAR 120 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + L +DTG R+G + E + + +H A AD+ Sbjct: 121 IGKNVHIHLALDTGMTRIGYADIPENAVKIEKISKIPNLVIEGMFTHFARADETDRSPAL 180 Query: 177 VQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 VQL+R+ ++S+GI+ P + + R GI++YG Sbjct: 181 VQLDRYLRFAELLEKRGVHIPVRHCSNSAGIIRVPEANLNVVRAGITIYGIYPSEEVERD 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + ++ + ++ G VSYGG R + +A +GYADGYP LS Sbjct: 241 IVKLTPAMELKSHVSYVKNVERGTAVSYGGTFVTERFTRMATIPVGYADGYPRQLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G PILG++ MD M D+TD ++ GD + + G D I ++ Sbjct: 298 --------KGWVLIRGKKAPILGRVCMDQFMVDVTDIPEVKAGDEVTLMGRDGEEFISVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 + SG +Y+ + I R + Y Sbjct: 350 TLGDLSGRFSYEFVCGISKRVPRVY 374 >gi|227487051|ref|ZP_03917367.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867] gi|227093125|gb|EEI28437.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867] Length = 377 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 156/382 (40%), Gaps = 29/382 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + E L IDL A+ +N + +GNA AVVK NAY G + + P L AG+ F Sbjct: 8 ETMELTTLTIDLDAIASNAREVQKAAGNADVMAVVKANAYNHGVDLVVPVLEKAGIAGFG 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V ++ E ++R T + + + + + S + V+ Sbjct: 68 VATIPEARQVREVT-ELPVLAWIWHPEQDLPRQEEHIDLGLASMAQARALAADPTPRTVT 126 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +DTG NR G+ + + ++ + +HLACAD+ + + Q++ Sbjct: 127 LV----IDTGLNRSGVDEENWEELCRFVAGVPHLTVTGLFTHLACADEEDNPLTGEQVDT 182 Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 ++ +A+S G+L + F RPG+ LYG + Sbjct: 183 LTRALAVARACGLNPTRNHVANSPGVLTKGDLGFSTVRPGLILYGYSPLREGDTAGYTLR 242 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A + +++K AGE SYG D A+ +GYADG P + G Sbjct: 243 PAMTWSAHVTIVKKIHAGEGASYGMTWHAPTDRYTAIVPVGYADGLPRRMQG-------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVAL 348 + I G P +G++ MD + D+ + + GD +FGP ++ +D+ A Sbjct: 295 ---KLEVAIGGKRYPQVGRVCMDQIVVDLGPEEPQVHPGDEAFLFGPGDHGEMTVDEWAE 351 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 T NY++L R + Y+ Sbjct: 352 HLETINYEVLCSPRGRVQRTYS 373 >gi|33151809|ref|NP_873162.1| alanine racemase [Haemophilus ducreyi 35000HP] gi|71152228|sp|Q7VNC9|ALR_HAEDU RecName: Full=Alanine racemase gi|33148030|gb|AAP95551.1| alanine racemase [Haemophilus ducreyi 35000HP] Length = 374 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 160/376 (42%), Gaps = 31/376 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 I AL++N + L+ + A++K NAYG G A L + V F V + E Sbjct: 6 ATISRQALRHNIQLIKKLAPKQKLLAMIKANAYGQGLLPAAATLADL-VDGFGVARLHEA 64 Query: 69 VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV------- 120 ++++ +I ++ G + VI + QL ++ Sbjct: 65 LEVQETGYTGKILLVEGFFDREELLKTLSRGFDTVIHCLEQLELLEQVAKEWQIEQQKRF 124 Query: 121 ---------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 L++DTG +RLG+ ++ F + L +SH + AD+ Sbjct: 125 WQRKTKIYFPINIWLKIDTGMHRLGIHPEQVDLFYARLKSCPLVATISFMSHFSRADELD 184 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKS 229 Q+ F Y S+A+SSGIL P H++ RPGI ++G + Sbjct: 185 CGYTEQQIATFEMATEQYSAHSRSIAASSGILYWPQAHYEWVRPGIIMHGISPHYQPITQ 244 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + V+T + +I IR AGE V YGG + + + V A+GY DGYP Sbjct: 245 LGFKPVMTLSSTLIAIRSHKAGEPVGYGGAWISDKATTLGVVAMGYGDGYPRNA------ 298 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349 G I G +VPI+G+++MDM D+ +VGD + ++G D+ ++ VA Sbjct: 299 -----PEGTPVLINGRIVPIVGRVSMDMLTVDLGIDSQDQVGDEVILWGNDLLIETVAQH 353 Query: 350 SGTTNYDLLVRIGTRY 365 G +Y+L+ ++ R Sbjct: 354 IGVISYELITKLTPRV 369 >gi|259047269|ref|ZP_05737670.1| alanine racemase [Granulicatella adiacens ATCC 49175] gi|259036045|gb|EEW37300.1| alanine racemase [Granulicatella adiacens ATCC 49175] Length = 371 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 156/378 (41%), Gaps = 27/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+ +DL+ +K N + L+ + + AVVK NAYG G +A A AGVQ F V Sbjct: 6 HRNTRVVVDLSIIKQNISKLKSKLNPSKQVYAVVKANAYGHGMIPVAKAALEAGVQGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +V+E + LR + +L G+ ++ + +N I + + + + Sbjct: 66 ANVDEALALREAGIMEPVLIL-GLSRVEDAPLLASNHITAAVDSVEWLLQAAPLLKEIPL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + VD+G R+G+ ++ L + + +H A AD+ + + Q E+F Sbjct: 125 KVHVAVDSGMGRIGVVNEKELTEVEAVLRNGPFEFEAMFTHFATADEEDTAHLTKQEEKF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-----INKSHPMQTV 235 +I + + +S+ + + R GI LYG + + Sbjct: 185 NGMIGELEERPPHIHCSNSAYAIWHSAGDSDIIRYGIGLYGINPSNGDLCVEDEELLTPA 244 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + E ++ ++K G+ VSYG K +A IGYADGY + Sbjct: 245 LQWETEMVKVKKLEIGDTVSYGATYKAKEPQWVATLPIGYADGYIRA------------Y 292 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 G+ + G PI+G++ MD M + + G + + G +I ++A + Sbjct: 293 NKGEVIVDGVRCPIIGRVCMDQCMVRLPHEYPV--GTKVTLLGKNKEEEITAIELAKRAD 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ I R + Y Sbjct: 351 TIAYEVICMISDRVKREY 368 >gi|254282682|ref|ZP_04957650.1| alanine racemase [gamma proteobacterium NOR51-B] gi|219678885|gb|EED35234.1| alanine racemase [gamma proteobacterium NOR51-B] Length = 351 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 108/367 (29%), Positives = 173/367 (47%), Gaps = 19/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L IDL AL +N +L+ +R AV+K +AYG G A AL F V Sbjct: 2 SRPTLLSIDLDALVHNAKLCQSLAAPSRFMAVIKADAYGHGAVPCARAL-RGIADAFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCGVSH 122 VEE V+LR I V+ G+ + + L PVI S QL + S Sbjct: 61 LVEEAVELRAAGISEPILVMEGLFSADDMRHIVEHKLWPVIHSRHQLDYLSPEHH---GT 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P L++DTG +RLG+ ++ ++SHL A++P + ++ Q++ + Sbjct: 118 PLWLKIDTGMHRLGIEPEKLPQMLSRIREL-GFSDITLMSHLGDAENPDTALSQRQIDAW 176 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + + + SL +S+ + R G LYGG N P++ V++ ++ + Sbjct: 177 QNITGQHSSV-TSLCNSAAVAQRSVPESSWVRAGYMLYGGQTTPN-PLPLKPVMSFQSAV 234 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + +R AGE V YGG+ R S+IA A GYADGYP + G I Sbjct: 235 MALRTIAAGETVGYGGRWCAQRPSVIATVAAGYADGYPRSA-----------EDGTPVNI 283 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G + P++G+++MDM D+TD +++G ++G +DDVA +GT Y+L R+ Sbjct: 284 GGEIAPLVGRVSMDMVTVDVTDLPGVKIGTPALLWGASPTIDDVANRAGTIGYELTARMP 343 Query: 363 TRYAKFY 369 R + Y Sbjct: 344 PRTPRTY 350 >gi|325295168|ref|YP_004281682.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065616|gb|ADY73623.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 353 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 165/367 (44%), Gaps = 26/367 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVE 66 +I L L +N+ + +SG + AVVK NAYG G +I+ L + V F V + E Sbjct: 4 WAEIHLNRLFHNYREIKKISGRKKIFAVVKANAYGHGSVRISKFLEDKTDVSGFAVATFE 63 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG +LR + I V+ K D L PVI L + + P+ + Sbjct: 64 EGKELREARIRREILVMASHLEEGYKEAVDYRLTPVIFDFEGLK-----LVKELDIPFHV 118 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++DTG RLG E + K ++ I+SH + AD+ Q ++F + Sbjct: 119 KIDTGMGRLGFLENEWNELL---SELKYSKVEGIMSHFSSADEDLD-FTKEQFKKFYSFA 174 Query: 187 SH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 S I+ + +S+ I + + R GI+LYG + ++ V+ +A++ Sbjct: 175 SELKQLKPEIKIHIDNSAAIPIKFDSILTHCRVGIALYGSKPYPDYPLNLKQVMEVKAKV 234 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I I++ + +SY K ++ +AV + GYADG +LS G+ I Sbjct: 235 ISIKELPSEFPISYSKTYKTSKQEKVAVISFGYADGLLRSLSN-----------KGEVLI 283 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G PI G+I MDMT+ I + L + GD I G + +++A +GT Y+++ I Sbjct: 284 NGRRCPIRGRICMDMTIVSI-EGLKVRKGDTAIISGEKLTFEEIAEKAGTIPYEIMCDIS 342 Query: 363 TRYAKFY 369 R + Y Sbjct: 343 PRVKRIY 349 >gi|91206154|ref|YP_538509.1| alanine racemase [Rickettsia bellii RML369-C] gi|157826544|ref|YP_001495608.1| alanine racemase [Rickettsia bellii OSU 85-389] gi|122425170|sp|Q1RGU4|ALR_RICBR RecName: Full=Alanine racemase gi|91069698|gb|ABE05420.1| Alanine racemase [Rickettsia bellii RML369-C] gi|157801848|gb|ABV78571.1| alanine racemase [Rickettsia bellii OSU 85-389] Length = 410 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 129/416 (31%), Positives = 191/416 (45%), Gaps = 65/416 (15%) Query: 9 LKIDLTALKNNWHSMNAL-----------------SGNAR-------------------- 31 L+I+L+A+K N+ + + +GN Sbjct: 6 LEINLSAIKANYRLLKNICENSVDFLHNVANKEEFAGNTSPRTAAYTLVREDASLGSTPK 65 Query: 32 ------------TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY-TPQA 78 A VK N+YGLG +I+ L + FFV S EG+ LR + Sbjct: 66 LPLGASYAKNLLVGAAVKANSYGLGAIEISKTLLEENCRYFFVASSNEGISLRKAIGDEV 125 Query: 79 RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGFNRLGL 137 I +L G+ + + NLIPV++++ Q+ + K + P L +TG NRLGL Sbjct: 126 NILILNGVFEHDALELIEYNLIPVLNNLNQIKIWQKFSNLKNQLLPCYLHFNTGINRLGL 185 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 + E +N K + IISHL+ ++D + N QL +F+ + ++ +ASLA Sbjct: 186 NHNEIEQLINNRDLLKGLNVEYIISHLSASEDSDNPYNLEQLNKFKAYLEYFPNAKASLA 245 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARIILIRKALAGELVSY 256 +S GI LG +YHF L RPG +LYG NK +PMQ VT +A II ++ G + Y Sbjct: 246 NSGGIFLGKDYHFNLVRPGAALYGLNPLGSNKPNPMQNPVTLKAPIIHLQNLTYGSRIGY 305 Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316 RDSLIA GYADG+ S G FI VPI+G+I+MD Sbjct: 306 NMTFTTKRDSLIATLPFGYADGFSRNFSNQ-----------GTVFINSRNVPIIGRISMD 354 Query: 317 MTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 + D+TD I +G ++I G + D +A GT Y++L +G RY + YT Sbjct: 355 LVNIDVTDLPPSDIFLGQEVEIIGNNCTPDKIADIIGTIGYEILTSLGNRYKRIYT 410 >gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510] gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510] Length = 821 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 150/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG N+ + V T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQ--IIHNVSTLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA] gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl [Bacteroides sp. 3_1_40A] gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA] gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl [Bacteroides sp. 3_1_40A] Length = 821 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 150/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG N+ + V T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQ--IIHNVSTLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|327438475|dbj|BAK14840.1| alanine racemase [Solibacillus silvestris StLB046] Length = 372 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 156/385 (40%), Gaps = 30/385 (7%) Query: 1 MHSN---EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M++ + IDL A+ +N S+ + + AVVK NAYG G ++A AG Sbjct: 1 MNTPIYYRPTKAVIDLQAITHNISSLQNYIGPKIQIIAVVKANAYGHGDVEVAKTAIEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V + +E V +R I VL N+I + S L + Sbjct: 61 ATMLAVATPDEAVHIRENFKDIDILVLGASPHTFIPFASAENIILTVFSTEWLQLAQQYT 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 ++VD+G R+G+S +E ++ + + I +H A AD+ S Sbjct: 121 PLLNQLRLHIKVDSGMGRIGVSTKEELMELYTMINSSDDFLVDGIFTHFATADEEDSMYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDK----INK 228 Q F+ + + +++ ++ P+ H+ R GIS+YG Sbjct: 181 DNQATLFKDFLGALPQKPRLVHVANTATALVKDPSLHYDAVRFGISMYGLLPSSYVGTKL 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P++ + + ++ I+K AG+ V YG D I IGYADG LSG Sbjct: 241 PFPIKPAFSLQTELVHIKKMQAGQSVGYGATYTAEEDCYIGTIPIGYADGMIRKLSGQ-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 + + G I+G+I MD +M + ++ ++ G+ + + G +I +D Sbjct: 299 ----------EVLVGGKRAKIVGRICMDQSMILLPEAYNV--GEEVVLIGCQQQEEITID 346 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D A T NY++ I R + Y Sbjct: 347 DWAHKLQTINYEVPCVITARVPRVY 371 >gi|227502721|ref|ZP_03932770.1| alanine racemase [Corynebacterium accolens ATCC 49725] gi|227076451|gb|EEI14414.1| alanine racemase [Corynebacterium accolens ATCC 49725] Length = 365 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 156/372 (41%), Gaps = 22/372 (5%) Query: 6 FLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ IDL A+ +N + + + + VVK +AYG G E++ P + AG V + Sbjct: 1 MLKTTIDLAAIAHNVRLIKEKIGPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVAT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V+LR + I + + + ++S Q + + Sbjct: 61 LTEAVQLRRMGVDSPIAAWIWQSDQVLEEALASGIQIAVNSPAQAQKL---VEAEIPAEI 117 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-- 182 ++V+TG +R G+ + + + ++SH ACADDP + N Q E F Sbjct: 118 YIKVETGMHRSGVDKADWDEVFALLREAPHITVLGLMSHFACADDPDNAHNDTQEEEFRR 177 Query: 183 RTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + G+E LA+S L P+ HF R GI+ YG + H ++ +T Sbjct: 178 ALDAARAAGLECPVNHLANSPATLSRPSAHFDQVRVGIACYGLEPIAGRDHGLRPAMTWS 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + ++ E SYG + +A GYADG P G + Sbjct: 238 GNVFGVKPIDKNEATSYGRTWSADKPGFLATVDCGYADGLPRAYQGHL-----------Q 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357 I G + P +G++ MD + D+ D+ I GD + IFG + ++A A GT NY++ Sbjct: 287 VGIGGRLYPQVGRVCMDQIVVDLGDNPHGIAPGDEVTIFGQGGMSATELADAVGTINYEV 346 Query: 358 LVRIGTRYAKFY 369 + R R + Y Sbjct: 347 VCRPTGRTEREY 358 >gi|319937488|ref|ZP_08011893.1| alanine racemase [Coprobacillus sp. 29_1] gi|319807328|gb|EFW03937.1| alanine racemase [Coprobacillus sp. 29_1] Length = 391 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 170/382 (44%), Gaps = 32/382 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++I+L AL+NN ++ L + + AVVK +AYG G KI+ L G+ F V Sbjct: 9 DRSWVEINLDALENNVQEISKLLRSRKQIMAVVKADAYGHGAIKISQELEKLGIDCFAVA 68 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + LR I +L P ++ +LI + + + + Sbjct: 69 TIDEAMILRQNHIHGDILILGFTAPHLAPLLLKYHLIQTVIDYDYGQQLNAMQ---LPLQ 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180 +++D+G +RLG + F + + SHL AD H Q Sbjct: 126 IHIKIDSGMHRLGADYHDLTH-IRRLFELPYLHVEGVFSHLCVADSSKMEDIHFTKQQFL 184 Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHP 231 F I + + + SS G+L P+YH+ R GI+LYG D + Sbjct: 185 NFNQTIHQLQEFGYDVGKVHIQSSYGLLNYPDYHYDYARMGIALYGVQSSTDDYMKNHLN 244 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q V++ ++ I + AG + YG L +DSLIAV +GYADG P LS Sbjct: 245 LQPVLSIQSHIACLHHYPAGSSLGYGRTYTLEKDSLIAVVPLGYADGLPRQLS------- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 ++G +PI+G+I MD M D+T +++ D + G + I ++++A Sbjct: 298 ----QNQDVLVRGKKIPIVGRICMDQLMIDVTSLKDVQLNDIVTFIGHNHQQTIGIEELA 353 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 + T + ++L RIG R K Y Sbjct: 354 KNAHTISNEILSRIGQRLPKVY 375 >gi|229011407|ref|ZP_04168598.1| Alanine racemase [Bacillus mycoides DSM 2048] gi|229166972|ref|ZP_04294719.1| Alanine racemase [Bacillus cereus AH621] gi|228616600|gb|EEK73678.1| Alanine racemase [Bacillus cereus AH621] gi|228749924|gb|EEL99758.1| Alanine racemase [Bacillus mycoides DSM 2048] Length = 408 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A + AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++LR I +L + + +++ + V L Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTSLFEKA 207 Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ ++S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTAEELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D+T+++ ++VGD + +G I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|311740005|ref|ZP_07713839.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305078|gb|EFQ81147.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035] Length = 368 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 161/372 (43%), Gaps = 22/372 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ IDL+A+ +N + + VVK +AYG G K+ P + AG F V + Sbjct: 4 MLKTTIDLSAIAHNVRLIKEKVGPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVAT 63 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR A I + + ++S+ Q + Sbjct: 64 LREAVDLRRAGVDAPIVAWIWQTDEILEEALANGIEVAVNSLEQAHKL---VKADFPAEV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V+TG +R G+ ++ + + ++ ++SH ACAD+P + N Q E FRT Sbjct: 121 YVKVETGMHRSGVDEEDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPHNDAQEEAFRT 180 Query: 185 --LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 ++ G+E LA+S +L P+ +F+ R G + YG + H ++ +T Sbjct: 181 ALQLAREIGLECPVNHLANSPAVLTRPSSYFEQVRVGAACYGLEPIEGREHGLRPAMTWS 240 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +I ++ GE YG K + +A GYADG P G Sbjct: 241 GQIFNVKPIQPGEGTCYGLTWKADKPGFLATVDCGYADGLPRGYQGDL-----------H 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357 I G++ P +G+I MD + D+ ++ ++ G IFG + D+A A+GT NY++ Sbjct: 290 VGIGGHLYPQVGRICMDQIVVDLGENPHGVDTGQDAVIFGNGGVSATDLAAAAGTINYEV 349 Query: 358 LVRIGTRYAKFY 369 + R + Y Sbjct: 350 VCLPDGRTEREY 361 >gi|229059775|ref|ZP_04197152.1| Alanine racemase [Bacillus cereus AH603] gi|228719604|gb|EEL71205.1| Alanine racemase [Bacillus cereus AH603] Length = 408 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A + AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++LR I +L + + +++ + V L Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTNLFEKA 207 Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ ++S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTAEELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D+T+++ ++VGD + +G I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|269137597|ref|YP_003294297.1| alanine racemase [Edwardsiella tarda EIB202] gi|267983257|gb|ACY83086.1| alanine racemase [Edwardsiella tarda EIB202] gi|304557668|gb|ADM40332.1| alanine racemase [Edwardsiella tarda FL6-60] Length = 363 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 20/369 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N+ + + ++R AVVK NAYG G + A L+ + V + Sbjct: 4 ATAIIDRRALRHNFQQIRKFAPHSRLIAVVKANAYGHGLLETAKILHQ--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G + + N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQLQALENARLERPIKVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + Q +SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPEQAEAFYRRLCTCPNVAQPVNFMSHFSRADEPECGRTEQQLACFDDF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV-----VTAEA 240 + G E S+A+S GILL P H + RPGI +YG + + + S +T ++ Sbjct: 182 VQGKAG-EQSIAASGGILLWPQSHRDMVRPGIIMYGVSPQADLSLAADHYGLQPAMTLQS 240 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I +R+ AGE V YGG RD+ + V AIGY DGYP + G Sbjct: 241 SLIAVREHKAGEPVGYGGAWVAQRDTRLGVVAIGYGDGYPRSA-----------PSGTPV 289 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G VPI+G+++MDM D+ + VGD + ++GP + ++ VA +G + Y+L+ + Sbjct: 290 LINGREVPIVGRVSMDMISVDLGPQAADRVGDNVIMWGPGLPVEKVAACTGISAYELITK 349 Query: 361 IGTRYAKFY 369 + +R A Y Sbjct: 350 LTSRVAMEY 358 >gi|74318118|ref|YP_315858.1| alanine racemase [Thiobacillus denitrificans ATCC 25259] gi|123611457|sp|Q3SH36|ALR_THIDA RecName: Full=Alanine racemase gi|74057613|gb|AAZ98053.1| alanine racemase [Thiobacillus denitrificans ATCC 25259] Length = 367 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 164/367 (44%), Gaps = 23/367 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ I A+ +N +G AR AVVK NAYG G + AL G F V Sbjct: 2 RPIKASISADAMAHNLRVARRHAGAARVFAVVKANAYGHGL---SRALRAFGAADGFAVL 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EE LR I +L GI G+ + +L PV+ QL + + + Sbjct: 59 TLEEAASLRQMGVDKPILLLEGIFDAGEIAACAELDLWPVLHHARQLDWLEQQRPA-RAL 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ D+G +RLG L E + +++H A ADD + + QL+ F Sbjct: 118 EVFLKFDSGMHRLGFPLAEHAEVVARVRALAGVARVTLMTHFAQADDSAG--VAWQLQPF 175 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239 R + + G+ S A+S+ ++ P RPGI LYG + + ++ +T Sbjct: 176 REALDGH-GLPWSSANSAALMRYPETVGDWVRPGIMLYGASPFTDVPASGLGLEPAMTLR 234 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE + YG + + V A GYADGYP G Sbjct: 235 SEIIAVQTLAAGEGIGYGQTFRADKPMRAGVVACGYADGYPRHA-----------PTGTP 283 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G LG+++MDM D+++ + VG + ++G + +DDVA A+GT++Y+LL Sbjct: 284 VVVDGRRTRTLGRVSMDMLCVDLSECPAAGVGSAVVLWGDGLPVDDVAAAAGTSSYELLC 343 Query: 360 RIGTRYA 366 + R Sbjct: 344 ALAPRVP 350 >gi|319780958|ref|YP_004140434.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166846|gb|ADV10384.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 379 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 180/365 (49%), Gaps = 17/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A++ N+ + A G+ A V+K + YGLG ++ AL G FFV + EG Sbjct: 25 LTIDLGAIRENYRRLKARLGDVACAGVLKADGYGLGAGQVGAALLREGCDIFFVALLGEG 84 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126 V LR IFVL GI PG E NL VI+S Q + S G P A+ Sbjct: 85 VALRRSLGAGPAIFVLNGIPPGAETDAVAANLCAVINSPEQLAAWRSAARRAGRKLPAAV 144 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVD+G +RLG++ ++ + + ++SHLACAD+P N Q F L Sbjct: 145 QVDSGMSRLGMAPRDVDRIAADPQAFDGIDIRYVMSHLACADEPEHPANEKQRSVFERLR 204 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + ASL +SSGI LGP++H+ L RPG +LYG KS+PM VV +A++ R Sbjct: 205 AMLPKAPASLTNSSGIFLGPSFHYDLARPGAALYGINPTPPKSNPMLPVVRLQAKVAQTR 264 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YG +A + GYADG+ + + +G Sbjct: 265 SVEKGAGVGYGHSYHAQGPLRLATISFGYADGWQRRAASA-------------AWFEGVR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P +G+++MD + DI+ + + GD +++ GP +DD A +GT Y++L +G R Sbjct: 312 LPFVGRVSMDSIILDISALPAGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILTSLGPR 371 Query: 365 YAKFY 369 + + Y Sbjct: 372 FHRRY 376 >gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126] gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126] Length = 821 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 155/370 (41%), Gaps = 19/370 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL + +N + L +T +VK AYG +IA L V V +E Sbjct: 462 LEIDLNKITHNLNFYRARLKPGVKTMVMVKAFAYGSSSHEIANWLEFQNVDYLAVAYADE 521 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 GV LR + Q I V+ E + + S + S + L+ Sbjct: 522 GVILRQHGIQLPIMVMNPDPRSFELLHQYNLEPELYSETIFKDYASYTRNHKSLLKVHLK 581 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLI 186 +DTG +RLG E + +++ I SHLA +D+ + ++ Q F+ L Sbjct: 582 LDTGMHRLGFEAHEIEQLQLLLRHNPQLKVASIFSHLAASDEAMHNGFSAQQAMSFKKLA 641 Query: 187 SH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 L +S GI P+Y F + R GI LYG S +Q+V T + Sbjct: 642 ESLVDFLGYKPILHLLNSPGISRFPDYQFDMVRLGIGLYGVDPTGIYSGQLQSVSTLKTV 701 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I ++ GE + Y + D A +IGYADG+ S GK Sbjct: 702 ISQVKHIKKGETIGYARRGVANEDMKTATISIGYADGFNRKFS----------QGIGKVL 751 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G + P++G + MDMTM ++T+ + GD + +FG + D+A A T Y++L I Sbjct: 752 INGILAPVIGNVCMDMTMVEVTNI-DCKAGDEVIVFGEGPNISDMASAIDTIPYEILTNI 810 Query: 362 GTRYAKF-YT 370 R + YT Sbjct: 811 SERVKRVFYT 820 >gi|220924500|ref|YP_002499802.1| alanine racemase [Methylobacterium nodulans ORS 2060] gi|254802370|sp|B8IEC7|ALR_METNO RecName: Full=Alanine racemase gi|219949107|gb|ACL59499.1| alanine racemase [Methylobacterium nodulans ORS 2060] Length = 370 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 190/366 (51%), Gaps = 15/366 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL IDL AL NW + A + A AAV+K +AYG G ++APAL++AG + FFV + Sbjct: 9 ARLTIDLGALAANWRRLAAEAAGAECAAVIKADAYGCGIAQVAPALWDAGCRTFFVAHLS 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125 E + R A I+VL G PG PV+ S ++ +++ S G P A Sbjct: 69 EAERTRAVLSDATIYVLNGFPPGSAPAYRAMGFRPVLGSRSEIAEWAQACRSLGERLPAA 128 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L VDTG NRLGL+ EA+D Q +L++SHL A+ P + + Q+ F + Sbjct: 129 LHVDTGMNRLGLNPAEAIDLA-GDAVLGAFQPTLLMSHLVSAEVPGDAITARQIAEFARV 187 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 Y + ASLA+S+GI LG ++ RPG +LYGG + +PM+ VV EA I+ + Sbjct: 188 RMAYPALPASLANSAGIFLGKAARHEIVRPGYALYGGNPTPERENPMRPVVRLEAAILQL 247 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AGE Y + L+A ++GYADGYP SG + + G Sbjct: 248 REVAAGETAGYNARWTAPGPRLLATLSLGYADGYPRAGSGR-----------AEALVGGV 296 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 P +G I+MD+ + D+T + + G + + G + LD+V +GT Y++L +G+ Sbjct: 297 RCPFVGTISMDLVILDVTQAPPEAVRRGAPVVLIGDGLTLDEVGQRAGTIGYEILTNLGS 356 Query: 364 RYAKFY 369 RY + Y Sbjct: 357 RYDRHY 362 >gi|322515165|ref|ZP_08068166.1| alanine racemase [Actinobacillus ureae ATCC 25976] gi|322118830|gb|EFX91025.1| alanine racemase [Actinobacillus ureae ATCC 25976] Length = 374 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 163/380 (42%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I + L++N + + + + A++K NAYG G A AL + V F V Sbjct: 2 KPATATISQSVLRHNIELIKTFAPHQKLLAMIKANAYGQGLLPAAGALTDL-VDGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120 + E ++++ +I ++ G + V+ + QL ++ Sbjct: 61 LREALEIQETGYTGKILLVEGFFDREELLKTLSRRFDTVVHCLEQLELLEQVAQEWQQEQ 120 Query: 121 -------------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 L++DTG +RLG+ ++ F L + +SH + A Sbjct: 121 QKGFWKRKAKIYFPVNVWLKIDTGMHRLGVHPEQVDMFYQRLQACPLVESISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+P Q+ F + Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DEPDCGYTEKQIATFEAATAPYTTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G + PI+G+++MDM D+ +VGD + +G D+ +++ Sbjct: 299 ---------PEGTPVLVNGRIAPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAQHIGVISYELITKLTPRV 369 >gi|306835298|ref|ZP_07468326.1| alanine racemase [Corynebacterium accolens ATCC 49726] gi|304568818|gb|EFM44355.1| alanine racemase [Corynebacterium accolens ATCC 49726] Length = 365 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 22/372 (5%) Query: 6 FLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ IDL A+ +N + + + + VVK +AYG G E++ P + AG V + Sbjct: 1 MLKTTIDLAAIAHNVRLIKEKIGPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVAT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V+LR + I + + ++S Q + + Sbjct: 61 LTEAVQLRRMGVDSPIAAWIWQSDQVLEEALACGIQIAVNSPAQAQKL---VEAEIPAEI 117 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V+TG +R G+ + + + ++SH ACADDP + N Q E FR Sbjct: 118 YIKVETGMHRSGVDKADWDEVFALLREAPHITVLGLMSHFACADDPDNAHNDAQEEEFRR 177 Query: 185 LI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + +H G+E LA+S L P+ HF+ R GI+ YG + H ++ +T Sbjct: 178 ALDAAHAAGLECPVNHLANSPATLSRPSAHFEQVRVGIACYGLEPIAGRDHGLRPAMTWS 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + ++ E SYG + +A GYADG P G + Sbjct: 238 GNVFGVKPIDKDEATSYGRTWSADKPGFLATVDCGYADGLPRAYQGHL-----------Q 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357 I G + P +G++ MD + D+ D+ I GD + IFG + ++A A GT NY++ Sbjct: 287 VGIDGRLYPQVGRVCMDQIVVDLGDNPHGIAPGDEVTIFGQGGMSATELADAVGTINYEV 346 Query: 358 LVRIGTRYAKFY 369 + R R + Y Sbjct: 347 VCRPAGRTEREY 358 >gi|307132473|ref|YP_003884489.1| alanine racemase 1, PLP-binding, biosynthetic [Dickeya dadantii 3937] gi|306530002|gb|ADM99932.1| alanine racemase 1, PLP-binding, biosynthetic [Dickeya dadantii 3937] Length = 358 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 102/373 (27%), Positives = 164/373 (43%), Gaps = 21/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + ID AL++N + ++ +R A+VK NAYG G + A A + + Sbjct: 1 MKT---ATAVIDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGAVEAARAFSD--ADGY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ + E + LR I +L G E + + + + + Sbjct: 56 GVSRLSEALALRAAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQLAALEQARLPH 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG +RLG+ ++A F S + Q I+SH AD+P + QL Sbjct: 116 PLTVWMKLDTGMHRLGVLPEKAEAFYARLSACANVVQPVNIMSHFCRADEPQAGTTQHQL 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VV 236 + F + G S+A+S GILL P H RPGI YG + + Sbjct: 176 DCFDAFVQDKPG-RQSIAASGGILLWPQTHRDQIRPGIIQYGVSPLAQGDASQWQLKPAM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +I +R+ A E V YGG R + + V AIGY DGYP Sbjct: 235 TLTSHLIAVREHHADEPVGYGGTWTSPRATRMGVIAIGYGDGYPR-----------DAKS 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G +I G VP+ G+++MDM D+ + +VGD + ++G + ++ VA SG + Y+ Sbjct: 284 GTPVWINGREVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGGPLPVEKVAAHSGISAYE 343 Query: 357 LLVRIGTRYAKFY 369 L+ R+ +R Y Sbjct: 344 LITRLTSRTRLEY 356 >gi|187924455|ref|YP_001896097.1| alanine racemase [Burkholderia phytofirmans PsJN] gi|226711029|sp|B2T5L6|ALR_BURPP RecName: Full=Alanine racemase gi|187715649|gb|ACD16873.1| alanine racemase [Burkholderia phytofirmans PsJN] Length = 356 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 153/367 (41%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I +AL NN + ++ AVVK NAYG G ++ P L F + Sbjct: 3 RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE VKLR I +L G P +I +L + S QL Sbjct: 61 LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NRLG + ++ + + +++H + AD Q++ F Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLMTHFSDADGDRG--VDYQVQAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G SLA+S+ L P HF RPGI +YG + + +Q +T Sbjct: 178 RGAQGIAGAR-SLANSAATLWHPATHFDWVRPGIIMYGASPSGVTAAIEGTGLQPAMTLA 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G V YG K I V A GYADGYP G Sbjct: 237 SELIAVQTLSEGHTVGYGSSFKARGSMRIGVVACGYADGYPR-----------VAPEGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+T + VG ++++G + +DDVA A GT Y+L+ Sbjct: 286 VIVDGVRTRVVGRVSMDMLTVDLTPVPTANVGSRVELWGTSLPIDDVAQACGTIGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|296158928|ref|ZP_06841756.1| alanine racemase [Burkholderia sp. Ch1-1] gi|295890803|gb|EFG70593.1| alanine racemase [Burkholderia sp. Ch1-1] Length = 356 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 154/367 (41%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I +AL NN + ++ AVVK NAYG G ++ P L F + Sbjct: 3 RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE VKLR I +L G P +I +L + S QL Sbjct: 61 LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NRLG + ++ + + +++H + AD Q+E F Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLMTHFSDADGDRG--VDYQVEAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G SLA+S+ L P HF RPGI +YG + + +Q +T Sbjct: 178 RGAQGIAGAR-SLANSAATLWHPATHFDWVRPGIIMYGASPSGVTAAIEGTGLQPAMTFA 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G V YG K I V A GYADGYP G Sbjct: 237 SELIAVQTLNEGHTVGYGSSFKARGSMRIGVVACGYADGYPR-----------VAPEGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G I+G+++MDM D+T + VG ++++G + +DDVA A GT Y+L+ Sbjct: 286 VIVEGVRTRIVGRVSMDMLTVDLTPIPTANVGSRVELWGNALPIDDVAQACGTIGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|227326007|ref|ZP_03830031.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 360 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 169/373 (45%), Gaps = 21/373 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + I+ AL++N + L+ ++ AVVK NAYG G + A + + Sbjct: 1 MKT---ATAVINRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIEAAHTFCD--ADCY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E + LR I +L G + + + + P+ + + Sbjct: 56 GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHCPEQLAALEQATLPQ 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P +++D+G +RLG+ + A F + + + Q I+SH AD+P + QL Sbjct: 116 PIPVWMKLDSGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQL 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVV 236 F G + S+A+S GILL P H RPGI LYG + N+ Q + Sbjct: 176 ACFDAFTQGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPAM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +I +R+ +GE V YGG R++ + V A+GY DGYP Sbjct: 235 TFTSHLIAVREHNSGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPR-----------CAPA 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G VP+ G+++MDM D+ +VGD + ++GP + ++ +A +G + Y+ Sbjct: 284 GTPVLVNGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAYE 343 Query: 357 LLVRIGTRYAKFY 369 L+ R+ R A Y Sbjct: 344 LITRLTQRTALEY 356 >gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] Length = 825 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 107/370 (28%), Positives = 170/370 (45%), Gaps = 24/370 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++D A+ +N + +L AV VK +YG G ++A L GV V +E Sbjct: 468 LEVDFDAMVHNLNYFRSLLPRKTMIAVMVKAFSYGSGAGEVASLLQYQGVNYLMVAFADE 527 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV+LR I V+ P + + NL P I S+ L + ++++ +P Sbjct: 528 GVELRAAGITIPIGVMNP-EPEAFDHMIEFNLEPEIYSLELLEAFDRVLTKHGIEKYPVH 586 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 L+++TG NR GL ++ K+ + + SHLA +D+ Q+ RF Sbjct: 587 LKLNTGMNRSGLDPEDLPALLKFFETKRKVIIRSMFSHLAGSDEARHDEYTLFQINRFIE 646 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +S+GI Y F + R GI L+G + P+ V + + Sbjct: 647 MTKEVQARFDYPIIRHILNSAGIERFGQYAFDMVRLGIGLHGISAVGA---PLWPVSSFK 703 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I +R+ + V YG + L RD+ IAV +GYADG LS G+ Sbjct: 704 TYIAAVRQVKGDQTVGYGRKGVLGRDTRIAVIPVGYADGLDRHLSCGV----------GE 753 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +I G VPI+G I MD M DITD+ +VGD ++IFG I + +++ GT Y++L Sbjct: 754 VWIGGQRVPIVGNICMDACMVDITDT-DAQVGDEVEIFGKHISVTELSDKLGTIPYEILT 812 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 813 SVSLRVKRIY 822 >gi|253578412|ref|ZP_04855684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850730|gb|EES78688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 381 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 158/385 (41%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + ++ I L A+++N+ M ++ + AV+K +AYG G +A + + + Sbjct: 1 MKKDSRVKAVISLDAVEHNFREMRKNIAEETKMIAVIKADAYGHGAVPVAHLIEDYDYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117 F + EE + LR I +L + + + P + + S Sbjct: 61 GFAAATAEEAIHLREAGITKPILILGIVFDEYFPELVRYEIRPAVCEYEEARKLSDEAVL 120 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + + +DTG R+G QE ++ ++ + +H A AD+ Sbjct: 121 QKKTVHIHIALDTGMTRIGFADAQENVEEIKKISELPNLEIEGMFTHFARADEYDRSPAM 180 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 VQLER+ + ++S+GI+ P + + R GI++YG Sbjct: 181 VQLERYLDFSRRVEEAGVEIPLHHCSNSAGIIRMPEANLNIVRAGITIYGIYPSSEVERD 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V+ ++ + ++ AG +SYGG R +A +GYADGY LS Sbjct: 241 IVKLEPVMELKSHVTYVKDVPAGAAISYGGTYVADRKLRVATVPVGYADGYSRQLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PILG++ MD M D+T+ ++ GD + + G D I ++ Sbjct: 298 --------KGWVLIHGQKAPILGRVCMDQFMVDVTEIGDVKKGDEVTLIGRDGDEFIGIE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ G +Y+ I R + Y Sbjct: 350 EIGDLCGRFSYEFACDISPRVPRVY 374 >gi|165975710|ref|YP_001651303.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251626|ref|ZP_07337799.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252778|ref|ZP_07338938.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247237|ref|ZP_07529287.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251781|ref|ZP_07533684.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260709|ref|ZP_07542399.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262841|ref|ZP_07544466.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165875811|gb|ABY68859.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648339|gb|EFL78535.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649468|gb|EFL79651.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856295|gb|EFM88448.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860782|gb|EFM92792.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869630|gb|EFN01417.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871856|gb|EFN03575.1| Alanine racemase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 374 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + + A++K NAYG G A L + V+ F V Sbjct: 2 KPATATISREALRHNIELIKTFAPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIPVIS------------SVP 107 + E ++++ +I ++ G +E FDT + Sbjct: 61 LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQ 120 Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 Q F+ + L++DTG +RLG+ ++ F L + +SH + A Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEKVDMFYQRLKACPLVESISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+P Q+ F S Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DEPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G +VPI+G+++MDM D+ +VGD + +G D+ +++ Sbjct: 299 ---------PEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAQHIGVISYELITKLTPRV 369 >gi|332535828|ref|ZP_08411559.1| alanine racemase, biosynthetic [Pseudoalteromonas haloplanktis ANT/505] gi|332034780|gb|EGI71319.1| alanine racemase, biosynthetic [Pseudoalteromonas haloplanktis ANT/505] Length = 359 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 171/371 (46%), Gaps = 21/371 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I+LTAL +N + + N++ AV+K NAYG G IA L F V Sbjct: 2 RLATAEINLTALAHNLAQVKGFAPNSKVMAVLKANAYGHGLVTIAQHL--NNADAFAVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EG+ LR I +L G I+ N +I QL Sbjct: 60 IDEGLALRAGGLTKPIVLLEGFFNKADLPILLANNFQTIIHDEYQLAALE-KAKLDAPIT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKL-GQLSLIISHLACADDPSSHVNSVQLERF 182 L+V+TG +RLG++ ++ F + +++H +CADD + Q+ F Sbjct: 119 CWLKVNTGMHRLGIAPEQFEAFYNRLQKTPNAKNSVNLMTHFSCADDVDNAKTVQQITLF 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L++ L++S+GI+ P+ H RPG+ LYG + I + H ++ V+ Sbjct: 179 DNLVNGIDQAH-CLSNSAGIIAWPSGHGDWVRPGLMLYGVSPMANSIGQQHKLKPVMRLT 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 R+I +R A E V YGG+ K + + +AV A+GY DGYP G Sbjct: 238 TRVIAVRDVPANEAVGYGGRWKSDKPTKLAVVAMGYGDGYPRHAK-----------EGTP 286 Query: 300 GFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 I I+G + MDM DI + +I+VGD + ++GP++ ++++AL + T Y+LL Sbjct: 287 VIIGEQRYGIVGSVAMDMISVDIGANEHNIKVGDRVTMWGPELPVEEIALCADTIPYELL 346 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 347 CNITPRVSYEY 357 >gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] Length = 818 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 151/370 (40%), Gaps = 21/370 (5%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL+++L+AL +N + L +T ++K AYG G ++A L V V Sbjct: 460 ARLEVNLSALAHNLRAYQRCLKPGVKTMVMIKATAYGAGSREVARLLEYLRVDYCCVAYA 519 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +EG +LR A I VL E++ V L + + + H Sbjct: 520 DEGTELRQAGISAPIMVLNPEAGAFEQMRLQRLEPV----VYSLEQLNNMSQEALPHGVH 575 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRT 184 L +D+G +RLG L E + + +HLA ++DP+ Q RF Sbjct: 576 LSIDSGMHRLGFDLHEMEGLLDYLRTHPELHVKSVYTHLAASEDPAHDAFTHEQARRFNQ 635 Query: 185 LISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + +S+GI P Y + R GI LYG P+Q V++ + Sbjct: 636 AYARITAVLGYHPLQHALNSNGITRFPQYQQDMVRLGIGLYGIDVSNTLPEPLQVVLSFK 695 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A I I+ AGE + YG + + ++GYADG Sbjct: 696 ATISQIKTIAAGETIGYGRRAQAHSLMRTGTISVGYADGLRRAAGNGAFS---------- 745 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G PILG + MDM+M D+T + GD ++IFG D + ++A T Y++ Sbjct: 746 VGVRGKRAPILGSVCMDMSMIDLTHIPEAQTGDTVEIFGHDPSVQELAKILATIPYEVFT 805 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 806 GISQRVKRVY 815 >gi|290508880|ref|ZP_06548251.1| alanine racemase [Klebsiella sp. 1_1_55] gi|289778274|gb|EFD86271.1| alanine racemase [Klebsiella sp. 1_1_55] Length = 356 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 158/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL+ N + + +R AVVK NAYG G ++ AL +G F + + Sbjct: 3 RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSAL--SGADGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + D + + Sbjct: 61 LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQAKLRAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A++P V ++ Sbjct: 121 YLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---E 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SLA+S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QAAEGLNCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ GE + YGG + +++ I + A GYADGYP G Sbjct: 238 EIIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPR-----------VAPSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +G ++++G +IK+DDVA +SGT Y+L+ Sbjct: 287 LVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|157964159|ref|YP_001498983.1| alanine racemase [Rickettsia massiliae MTU5] gi|157843935|gb|ABV84436.1| Alanine racemase [Rickettsia massiliae MTU5] Length = 377 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 182/371 (49%), Gaps = 21/371 (5%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++I+L+ +KNN+ + + + A VK N YGLG +I+ AL + FFV Sbjct: 22 TMSLCTVEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFV 81 Query: 63 TSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 S EEGV LR I VL G+ + + NL PV++++ Q+ + K + Sbjct: 82 ASSEEGVNLRNALGLDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNR 141 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 P L +TG NRLGLS E ++ K L IISHLA +++ + N QL Sbjct: 142 LLPCYLHFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLN 201 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RF+ + ++ ++ASLA+S GI LG +YHF L R G +LYG VT +A Sbjct: 202 RFKAYLQYFPNVKASLANSGGIFLGQDYHFDLARSGAALYGLNPLTK------NPVTLKA 255 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ + Y RDS+IA +GYADG+ S G+ Sbjct: 256 PIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEV 304 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLL 358 FI VPI+G+++MD+ D+TD E+ G +I G D +A GT Y++L Sbjct: 305 FINSRGVPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVL 364 Query: 359 VRIGTRYAKFY 369 +G+RY + Y Sbjct: 365 TNLGSRYKRKY 375 >gi|114569759|ref|YP_756439.1| alanine racemase [Maricaulis maris MCS10] gi|114340221|gb|ABI65501.1| alanine racemase [Maricaulis maris MCS10] Length = 366 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 187/371 (50%), Gaps = 19/371 (5%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ RL IDL A+K N+ ++ L+ A AVVK N YGLG ++ PAL +AG + F+ Sbjct: 10 RAHPAPRLIIDLAAIKRNYAALQTLAPTASVGAVVKANGYGLGAAQVVPALADAGCRCFY 69 Query: 62 VTSVEEGVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V E + R A IFV G P + + +L PVI+ + Q L + Sbjct: 70 VAHTSEAREAREALAGRPADIFVFNGFWPSELAELRQLSLFPVINDLQQ---LEDLRALA 126 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P A+ DTG +RLGL E + + I+SHLAC+DDP +N Q Sbjct: 127 PDLPCAIHFDTGMSRLGLDAAETEALLADPARIDALDVRQIMSHLACSDDPDHPLNEQQR 186 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 +RF + GI ASL++S+G LLG YHF + RPG++L+ G ++ P + VV + Sbjct: 187 QRFERIRHALPGIPASLSNSTGTLLGQAYHFDMLRPGLALFSGMPAPGQASPFEPVVAID 246 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A I+ IR G+ V YG R +A A GYADG GG Sbjct: 247 APILQIRTLQPGDTVGYGACWTADRPRRVATVAAGYADGLLRAFGN-----------GGY 295 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 G I VPILG+++MD+ DI + GD ++ GPDI +++A ++ T +Y+ L Sbjct: 296 GRIGETQVPILGRVSMDLICVDIDAVEEPVRPGDPVRFLGPDI--ENMADSAATISYEFL 353 Query: 359 VRIGTRYAKFY 369 VR+G R+ + Y Sbjct: 354 VRLGIRFDRSY 364 >gi|91784141|ref|YP_559347.1| alanine racemase [Burkholderia xenovorans LB400] gi|91688095|gb|ABE31295.1| Alanine racemase [Burkholderia xenovorans LB400] Length = 356 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 154/369 (41%), Gaps = 22/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I +AL NN + ++ AVVK NAYG G ++ P L F + Sbjct: 3 RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE VKLR I +L G P +I +L + S QL Sbjct: 61 LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NRLG + ++ + + +++H + AD Q+E F Sbjct: 120 IQLKMNTGMNRLGYTPEKFRAAWERARAAQGVGQITLMTHFSDADGDRG--VDYQVEAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G SLA+S+ L P HF RPGI LYG + + +Q +T Sbjct: 178 RGAQGIAGAR-SLANSAATLWHPATHFDWVRPGIILYGASPSGVTAAIEGTGLQPAMTFA 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G V YG K I V A GYADGYP G Sbjct: 237 SELIAVQTLHEGHTVGYGSSFKARGSMRIGVVACGYADGYPR-----------VAPEGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G I+G+++MDM D+T + VG ++++G + +DDVA A GT Y+L+ Sbjct: 286 VIVEGVRTRIVGRVSMDMLTVDLTPIPTANVGSRVELWGNALPIDDVAQACGTIGYELMC 345 Query: 360 RIGTRYAKF 368 + R Sbjct: 346 AVAPRVPMR 354 >gi|288919701|ref|ZP_06414028.1| alanine racemase [Frankia sp. EUN1f] gi|288348890|gb|EFC83140.1| alanine racemase [Frankia sp. EUN1f] Length = 379 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 162/389 (41%), Gaps = 31/389 (7%) Query: 1 MHSNEFLRL--KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M + R IDL A++++ ++ + NA T AVVK + YG G A A +AG Sbjct: 1 MSQSHLPRAYAAIDLDAVRDSVAALVVRARNATTMAVVKADGYGHGMVPCARAALDAGAG 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMS 117 +EE + LR A IF + ++ S + + Sbjct: 61 WLGTAFLEEALSLRAAGINAPIFSWLAAPGERLAAGLAADIDLSASATWALAELAAAARQ 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHV 174 G + L+VDTG R G + ++ + + + + + SH A ADDP Sbjct: 121 VGRAARVHLKVDTGLGRAGATAEDWPNLCDTAAALEGEGLLDVVGVWSHFAFADDPGHPT 180 Query: 175 NSVQLERF--RTLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 Q+ RF ++ G+ LA+S+ L+ P HF + RPG+S+YG + Sbjct: 181 VQSQIGRFGDAMDVARKAGLNPQIRHLANSAATLITPEAHFDMVRPGVSVYGLSPGPEVG 240 Query: 230 HPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 P + +T A L+++ G VSY + ++ +AV +GYADG P + Sbjct: 241 PPSAFGLRPAMTLRATTALVKRVPEGTGVSYAHRYTTRSETNLAVIPLGYADGIPRAATN 300 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341 + + G I G + MD + D+ + GD + +FGP + Sbjct: 301 T-----------AEVLLGGRRRRIAGTVCMDQFVVDVG-VDPVAAGDDVVLFGPGHHGEP 348 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370 DD A GT NY+++ R+G R + YT Sbjct: 349 TSDDWARVLGTINYEIVTRVGARVPRVYT 377 >gi|123444026|ref|YP_001007996.1| alanine racemase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090987|emb|CAL13870.1| alanine racemase (biosynthetic) [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 359 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 176/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRIAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + ++ + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPILAANCIETAVHSIEQLEALEVAELSAPIHVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S K + Q I+SH + AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACKNVIQPVNIMSHFSRADEPQVDTTRQQLDCFDTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 ++ G + S+A+S GILL P H RPGI LYG + ++ + ++ + Sbjct: 182 VADKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFELKPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + + +VGD + ++G ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVGIVGRVSMDMISVDLGPNATDKVGDEVLLWGAELPVEKIAACTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|319648697|ref|ZP_08002908.1| alanine racemase [Bacillus sp. BT1B_CT2] gi|317389116|gb|EFV69932.1| alanine racemase [Bacillus sp. BT1B_CT2] Length = 398 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 155/378 (41%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDLTALK N +M G + AVVK NAYG G ++A A G V Sbjct: 17 RKTWAEIDLTALKENVRNMKRHIGEHVHLMAVVKANAYGHGDAQVAKAALAEGASILAVA 76 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSH 122 ++E + LR + I VL + P I + +I SV L Sbjct: 77 LLDEALSLRAQGIEEPILVLGAVPPEYASIAAEKRIIVTGYSVGWLKDVLGFLNEAEAPL 136 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 Y L++DTG RLG + +E + + + + + +H A AD+ + ++QL+R Sbjct: 137 EYHLKIDTGMGRLGCKTEEEIKEMMEMTESSDKLNCTGVFTHFATADEKDTDYFNMQLDR 196 Query: 182 FRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 F+ LIS + ++S+ L F R GI +YG ++ V Sbjct: 197 FKELISPLPLDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDELPFRLREV 256 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + ++K GE VSYG RD I +GYADG+ L Sbjct: 257 FSLHTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRL------------ 304 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G + I G I G+I MD M + + + G + + G I +D++A Sbjct: 305 AGTEVLIDGKRQKIAGRICMDQFMISLAEEYPV--GTKVTLIGKQKDEWISVDEIAQNLQ 362 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I +R + + Sbjct: 363 TINYEITCMISSRVPRMF 380 >gi|293394140|ref|ZP_06638440.1| alanine racemase [Serratia odorifera DSM 4582] gi|291423118|gb|EFE96347.1| alanine racemase [Serratia odorifera DSM 4582] Length = 359 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 169/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + + +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRQAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + P + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPVLVANNIETAVHSIEQLEALEQAELARPVPVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + + Q I+SH + AD+P+S Q+ F Sbjct: 122 KIDTGMHRLGVRPEQAEAFYQRLCACRNVAQPVNIMSHFSRADEPNSDATQQQIACFSAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEARI 242 G + S+A+S G LL P+ H + RPGI LYG + + +T ++ + Sbjct: 182 AHGKPG-QRSIAASGGTLLWPDAHNEWVRPGIILYGVSPIEQRHGGQFDLQPAMTLKSCL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V A+GY DGYP + G ++ Sbjct: 241 IAVREHKAGEAVGYGGTWVSPRDTRLGVVAMGYGDGYPRSA-----------PTGTPIWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G VPI+G+++MDM D+ S VGD + ++G + ++ +A +G Y+L+ ++ Sbjct: 290 NGREVPIVGRVSMDMISVDLGPDASDRVGDEVVLWGAPLPVERIAEVTGIGAYELITKLT 349 Query: 363 TRYAKFY 369 R A Y Sbjct: 350 QRVAMEY 356 >gi|294634343|ref|ZP_06712881.1| alanine racemase [Edwardsiella tarda ATCC 23685] gi|291092240|gb|EFE24801.1| alanine racemase [Edwardsiella tarda ATCC 23685] Length = 363 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 103/365 (28%), Positives = 169/365 (46%), Gaps = 20/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL++N+ + + + ++R AVVK NAYG G + A L+ + V + E + Sbjct: 8 IDRRALRHNFQQIRSFAPHSRLIAVVKANAYGHGLLETANTLHQ--ADCYGVARIGEALM 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR I +L G + + N I + + +++DT Sbjct: 66 LRSGGIVKPILLLEGFFSASDLPVLVANNIETAVHSEEQLQALEQAQLERPVKVWMKLDT 125 Query: 131 GFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG+ ++A F + Q +SH + AD+P Q+ F + Sbjct: 126 GMHRLGVRPEQAEAFYQRLCACPNVAQPVNFMSHFSRADEPQCGRTEAQMACFDAFVQGK 185 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV-----VTAEARIIL 244 G + S+A+S GILL P H + RPGI LYG + + + + +T ++ +I Sbjct: 186 PG-DQSIAASGGILLWPQSHRDMVRPGIILYGVSPQADLALAADHYGLQPAMTLQSSLIA 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ AGE V YGG D+ + V AIGY DGYP + G I G Sbjct: 245 VREHKAGEPVGYGGTWVAECDTRLGVVAIGYGDGYPRSA-----------PSGTPVLING 293 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MDM D+ VGD + ++GP + ++ VA +G + Y+L+ ++ +R Sbjct: 294 REVPIVGRVSMDMISVDLGPQAQDRVGDKVIMWGPGLPVEKVAACTGISAYELITKLTSR 353 Query: 365 YAKFY 369 A Y Sbjct: 354 VAMEY 358 >gi|90407215|ref|ZP_01215402.1| alanine racemase [Psychromonas sp. CNPT3] gi|90311638|gb|EAS39736.1| alanine racemase [Psychromonas sp. CNPT3] Length = 357 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 171/370 (46%), Gaps = 20/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R I+L AL++N + + N++ A++K NAYG G +IA L + + V Sbjct: 2 NITRAIINLKALQHNLKVLKKQAPNSKILAIIKANAYGHGMIEIAKNLTD--IHGLGVAR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 E + LR + I +L G + ++ +L VI S Q+ + Sbjct: 60 FNEALVLRHAHIKTPIVLLEGFFAKENLPLLVQHDLQTVIHSEEQVQDL-ISATLDKPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D G +RLG + +K + +I H CAD+ + + Q++ F Sbjct: 119 IWLKLDVGMHRLGFHAHQFKKMYQLLKHSKNVKLPINLICHFNCADELDNPITEKQIQLF 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239 + I G+ SLASS+ L P H + RPGI+LYG + +K +Q V+T + Sbjct: 179 KVQIQEDSGLN-SLASSAATLAWPTSHADMIRPGIALYGISPFADKEAEEFSLQPVMTLK 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+I +R+ GE V YG +D+ + V A+GY DGYP G Sbjct: 238 SRLIAVREHKKGEAVGYGANWVAPQDTKLGVVAVGYGDGYPRMA-----------PEGTP 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +VP++G+++MDM D+ + +VGD + ++G + V+ GT Y+L+ Sbjct: 287 ILVNGRIVPLVGRVSMDMLTVDLGLDCTDKVGDDVTLWGEGLSATRVSKHMGTVAYELIT 346 Query: 360 RIGTRYAKFY 369 ++ R Y Sbjct: 347 KLTARVELQY 356 >gi|163939906|ref|YP_001644790.1| alanine racemase [Bacillus weihenstephanensis KBAB4] gi|229132940|ref|ZP_04261783.1| Alanine racemase [Bacillus cereus BDRD-ST196] gi|163862103|gb|ABY43162.1| alanine racemase [Bacillus weihenstephanensis KBAB4] gi|228650522|gb|EEL06514.1| Alanine racemase [Bacillus cereus BDRD-ST196] Length = 408 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A + AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++LR I +L + + +++ + V L Sbjct: 88 EAIELREAGITVPILILGYTPVAAVEDVIQYDVMMTVYRVEDLQGIDEVANHLQKKVRIH 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTNMQTSLFEKA 207 Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ ++S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTAEELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSREVDHTVASLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D+T+++ ++VGD + +G I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTNAMPVQVGDEVVFYGKQDEEEIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|229917795|ref|YP_002886441.1| alanine racemase [Exiguobacterium sp. AT1b] gi|229469224|gb|ACQ70996.1| alanine racemase [Exiguobacterium sp. AT1b] Length = 358 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 157/372 (42%), Gaps = 24/372 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R++ID A+ +N + AVVK NAYG G ++A G V Sbjct: 3 RPSRIEIDRAAIAHNIKELTRRIPQ-DLMAVVKANAYGHGAVEVAKIALENGATMLGVAL 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A I V+ P + + + + S L + + Sbjct: 62 LEEALELRDAGIEAPILVMEAQFPEYAGVAAEQGITLSVFSAEWLREAAPYIE-EKPLAV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VDTG RLGL +E L+ + I +H A AD+ S++ Q ERF Sbjct: 121 HIKVDTGMGRLGLRTREQLNAL-LEEATDSFVVEGIYTHFATADELDSNLYYTQQERFER 179 Query: 185 LISHYKGIEASLA----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVT 237 L+ + + + + G + + L R GI+LYG + T Sbjct: 180 LMDGLHERFRYIHTSNSAGAIRMAGQDVPYNLVRVGIALYGLYPSHEMETFYSFLRPAFT 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +++++ +++ AG+ +SYG + D I +GYADG+ SG Sbjct: 240 LKSQLMQVKRLEAGQTISYGATYTTSADEWIGTVPVGYADGWLRKASGF----------- 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + + G PI+G++ MD M + + G + + G ++ +D++A GT NY++ Sbjct: 289 -EVEVNGIRCPIVGRVCMDRFMIRLPKEFPV--GTDVTLVGGNVAIDELASYLGTINYEI 345 Query: 358 LVRIGTRYAKFY 369 + + +R + Y Sbjct: 346 VCQFTSRLPRLY 357 >gi|42526605|ref|NP_971703.1| alanine racemase [Treponema denticola ATCC 35405] gi|81831436|sp|Q73NQ7|ALR_TREDE RecName: Full=Alanine racemase gi|41816798|gb|AAS11584.1| alanine racemase [Treponema denticola ATCC 35405] Length = 379 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 162/384 (42%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I L L+ N + L+ N + VK +AYG G ++A A AGV V Sbjct: 2 RATKAIIHLDNLQYNIKEIKKRLNKNVKICLPVKADAYGHGAVRVAVAAIRAGVSYLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 S++E V+LR A I L + + ++ P++ + ++ Sbjct: 62 SIQEAVELREAGIVAPIISLSLPVLEEIPELLKYDIEPLVIDEEFINDLNRFAKKLNKKA 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQL 179 L++DTG R+G S EA+ + +L + +H A + D+ + Q+ Sbjct: 122 WVHLKIDTGMRRIGCSPMEAVKLAVQIDRAENLELKGVCTHFAVSDSTDEKNIKFTKKQI 181 Query: 180 ERFRTLISHYK--GIEASLASSSGI---LLGPNYHFQLTRPGISLYGG--TDKINKSHPM 232 F+ I K GI L ++ L P F + RPGI +YG + +N + Sbjct: 182 SVFKDSIKEIKKAGINPGLIHAANSGSVLQYPEAQFDMVRPGILVYGYAPSPSLNSLIDL 241 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ +++LI+K VSY +++ +A IGYADG +LSGL Sbjct: 242 KPVMELVTQVVLIKKIEKDTSVSYDRCWTAEKETFVATLPIGYADGLMRSLSGL------ 295 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-------DIKLDD 345 K I PI+G+I MD M DI S ++ D + IFGP + D Sbjct: 296 ------KVRIGKDFFPIIGRICMDQCMIDIGASPWVQRWDEVCIFGPVSKEHPKNNTAQD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A +GT Y+L I R + + Sbjct: 350 LAKIAGTIPYELTCDINKRVPRIF 373 >gi|227541786|ref|ZP_03971835.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182492|gb|EEI63464.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866] Length = 368 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 155/379 (40%), Gaps = 29/379 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 E L IDL A+ +N + +GNA AVVK NAY G + + P L AG+ F V + Sbjct: 2 ELTTLTIDLDAIASNAREVQKAAGNADVMAVVKANAYNHGVDLVVPVLEKAGIAGFGVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E ++R T + + + + + S + V+ Sbjct: 62 IPEARQVREVT-ELPVLAWIWHPEQDLPRQEEHIDLGLASMAQARALAADPTPRTVTLV- 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +DTG NR G+ + + ++ + +HLACAD+ + + Q++ Sbjct: 120 ---IDTGLNRSGVDEENWEELCRFVAGVPHLTVTGLFTHLACADEEDNPLTGEQVDTLTR 176 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVV 236 ++ +A+S G+L + F RPG+ LYG + + Sbjct: 177 ALAVARACGLNPTRNHVANSPGVLTKGDLGFSTVRPGLILYGYSPLREGDTAGYTLRPAM 236 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A + +++K AGE SYG D A+ +GYADG P + G Sbjct: 237 TWSAHVTIVKKIHAGEGASYGMTWHAPTDRYTAIVPVGYADGLPRRMQG----------- 285 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVALASG 351 + I G P +G++ MD + D+ + + GD +FGP ++ +D+ A Sbjct: 286 KLEVAIGGKRYPQVGRVCMDQIVVDLGPEEPQVHPGDEAFLFGPGDHGEMTVDEWAEHLE 345 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T NY++L R + Y+ Sbjct: 346 TINYEVLCSPRGRVQRTYS 364 >gi|89099495|ref|ZP_01172371.1| alanine racemase [Bacillus sp. NRRL B-14911] gi|89085881|gb|EAR65006.1| alanine racemase [Bacillus sp. NRRL B-14911] Length = 392 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 160/375 (42%), Gaps = 27/375 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +I+L +K N SM L G+ + AVVK N YG G + A A AG V + Sbjct: 13 TWAEINLDHIKENVKSMKKLLPGDVKLFAVVKANGYGHGDIQAAGAALEAGADCLAVAFL 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR +A I VL P + ++ + V L + G + Sbjct: 73 DEALSLRQRGIEAPILVLGASRPEDAPLAASADITLTVFQVNWLEKALPCL-QGKRLTFH 131 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG R+G+ E L + + +L I +H A AD+ QL RFR Sbjct: 132 VKLDTGMGRIGVREKDELLAIEKLAGREDAFELQGIYTHFATADELDDSYFREQLGRFRE 191 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTA 238 ++S + + +S+ L P F R GIS+YG T H P++ + Sbjct: 192 MLSWLGKVPEMVHTSNSAASLRFPEARFNAVRMGISMYGLTPSPEIEHELPFPLKEAFSL 251 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ARI+ ++K G+ VSYG + D I IGYADG+ L G Sbjct: 252 HARIVHVKKLQKGDKVSYGATYEAEGDEWIGTLPIGYADGWIRRLQGQ------------ 299 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + + G VPI+G+I MD M + +E G + G I ++++A T N Sbjct: 300 EVLVNGSRVPIVGRICMDQCMIRLP--YGVEPGTAATLIGAQGDSMISVNEIAAKLETIN 357 Query: 355 YDLLVRIGTRYAKFY 369 Y++ I +R + Y Sbjct: 358 YEVTCMISSRVPRVY 372 >gi|197303364|ref|ZP_03168403.1| hypothetical protein RUMLAC_02086 [Ruminococcus lactaris ATCC 29176] gi|197297362|gb|EDY31923.1| hypothetical protein RUMLAC_02086 [Ruminococcus lactaris ATCC 29176] Length = 387 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58 M + IDL A+ N M G + + AV+K + YG G +A + Sbjct: 1 MKKYSRVCAYIDLDAIAYNMEQMKKRIGEDGKLIAVIKTDGYGHGAVPLAKMFEEMPYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 + V + E LR + I VL + P + + + + + + + Sbjct: 61 GYAVACMGEAGVLREQGIKKPILVLGCVFPDEYEEMVEKEIRAAVYTEEMARGMSEAAQR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + + +++DTG R+G + +E+ Q + +H A AD+ Sbjct: 121 LGKTAYFHIKIDTGMGRIGFPVTEESASSIERISRLPNVQTEAMFTHFAKADELDKSYTL 180 Query: 177 VQLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q E+F + + + +S+GI+ P+ + R GIS+YG + Sbjct: 181 KQHEKFLWMKELMEERNVPIRYFDCDNSAGIIDFPDLKHDIARAGISIYGMYPSDDVDQN 240 Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + + + +++ G +SYGG + IA +GY DGYP +LS Sbjct: 241 AVSLRPALRLVSHVSFVKEVGKGTSISYGGTYITEKKMKIATIPVGYGDGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G I G ILG++ MD M D+T+ + D + + G I+++ Sbjct: 298 --------KGYVLIHGKKARILGRVCMDQFMVDVTEIPDVAFMDEVILIGRDQEEQIQVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A SG NY+ + + R + Y Sbjct: 350 DLAELSGRFNYEFVCCLSKRIPRVY 374 >gi|85716398|ref|ZP_01047370.1| alanine racemase region protein [Nitrobacter sp. Nb-311A] gi|85696755|gb|EAQ34641.1| alanine racemase region protein [Nitrobacter sp. Nb-311A] Length = 397 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 181/365 (49%), Gaps = 11/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + + A A VVK +AYG G + AL AG + FFV +++E Sbjct: 31 LTVDLDAIVANWRKLEKAAVPAECAGVVKADAYGCGSRPVVRALSAAGCKTFFVATLDEA 90 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R A I+VL G N PVI + +L + G + A+ Sbjct: 91 RVVRAAASAADIYVLDGFFQNCGDAFATINCRPVIGDINELAEWDVFCRRTGWAGGAAIH 150 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL+ EA ++L++SHLACA+ + +N+ Q+ FR + Sbjct: 151 IDTGMNRLGLTPDEAQGILPRIEA-GDHGITLVMSHLACAESLNHPLNARQVAAFREIAR 209 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASLA+SSGI LGP Y F L RPG +LYG ++PMQ VV +ARI+ R Sbjct: 210 LFSGVPASLANSSGIFLGPQYQFDLVRPGAALYGVNPTPEAANPMQPVVELKARIVQTRS 269 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R + +AV + GYADGY D G + G Sbjct: 270 IDKGESVGYGATWTARRPTRLAVVSAGYADGYFRAGGSNDGTR------GANIVVAGTRC 323 Query: 308 PILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P+ G+I+MD+ DITD S + G + G I +D++A GT Y++L +G R Sbjct: 324 PVAGRISMDLLAVDITDLPSPGGVRRGHLATLIGEGITVDELAHHFGTIGYEVLTSLGRR 383 Query: 365 YAKFY 369 Y + Y Sbjct: 384 YYRIY 388 >gi|301051975|ref|YP_003790186.1| alanine racemase [Bacillus anthracis CI] gi|300374144|gb|ADK03048.1| alanine racemase [Bacillus cereus biovar anthracis str. CI] Length = 389 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIQLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|86131244|ref|ZP_01049843.1| Alanine racemase [Dokdonia donghaensis MED134] gi|85818655|gb|EAQ39815.1| Alanine racemase [Dokdonia donghaensis MED134] Length = 366 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 157/371 (42%), Gaps = 21/371 (5%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL+IDL AL++N+ M + S + AVVK AYG + +A L V F V V Sbjct: 4 TRLEIDLRALRHNYAYMRSKVSPGVKVMAVVKAFAYGSDAQVVAQELEKLNVDYFAVAYV 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HP 123 EEGV LR I VL+ P + + + L P I S L +S +P Sbjct: 64 EEGVALRDAGITTPILVLHP-QPDNFETLLERCLEPNIYSRRMLEMFSAFAKAKKQTAYP 122 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERF 182 L+ +TG NRLG + ++ N + ++ + SHLA ++D Q+ +F Sbjct: 123 IHLKFNTGLNRLGFTGEDVPWIVKNVLKSEHLKVKSLFSHLAASEDLDERDFTLHQIAQF 182 Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + + ++SGI+ PN H+ R GI LYG + ++ ++ V Sbjct: 183 DEIANEIKTQLGYAPFMHMTNTSGIINYPNAHYDCVRTGIGLYGYGNTPEETANLKPVAR 242 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I G+ V Y + A IG+ADG Sbjct: 243 LNSVISQKHIINPGDSVGYNRALVAKEKMVTATIPIGHADGISRAYGNGV---------- 292 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 G I G P +G + MDM M ++T+ E GD ++IFG + ++ + +Y+L Sbjct: 293 GYVTIAGEKAPFVGNVCMDMIMVNVTNIA-CEEGDDVEIFGTQTGAETLSQQVQSISYEL 351 Query: 358 LVRIGTRYAKF 368 L +G R + Sbjct: 352 LTMVGQRVKRV 362 >gi|184154687|ref|YP_001843027.1| alanine racemase [Lactobacillus fermentum IFO 3956] gi|227514327|ref|ZP_03944376.1| alanine racemase [Lactobacillus fermentum ATCC 14931] gi|226711050|sp|B2GA65|ALR_LACF3 RecName: Full=Alanine racemase gi|183226031|dbj|BAG26547.1| alanine racemase [Lactobacillus fermentum IFO 3956] gi|227087299|gb|EEI22611.1| alanine racemase [Lactobacillus fermentum ATCC 14931] gi|299782815|gb|ADJ40813.1| Alanine racemase [Lactobacillus fermentum CECT 5716] Length = 373 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 151/385 (39%), Gaps = 30/385 (7%) Query: 1 MHSNEFLR--LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + L +DL AL N L+ +R AVVK NAYG G +A AL AGV Sbjct: 1 MVSARLRKTDLVVDLKALGANVQRQREQLAPGSRILAVVKANAYGNGMVPVASALARAGV 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSK 114 + F V ++E ++LR Q + VL + + + S+ +K Sbjct: 61 EGFCVALLDEAIELRDSGIQELVLVLGITPVEYAPLAAAQGISLTVGSLEWLKNYQRLAK 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L +DTG R+G + E + I +H A AD+ + Sbjct: 121 EEGIKQPLKVHLALDTGMGRIGFTTPEDFKEALQLVAAPCFEFEGIFTHFATADEEDATY 180 Query: 175 NSVQLERFRTLISHYKGIEASLA--SSSGILLGPNYH-FQLTRPGISLYGGTDK---INK 228 Q RF ++ + +S+ L R GIS+YG I + Sbjct: 181 FERQRARFDDFMAVVTKRPPFVHVANSATGLWHQKSIVANTIRMGISMYGANPSGVGIKE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 S P++ V + +++ AGE VSYG D +A +GYADGYP + G Sbjct: 241 SFPLEPVTSLVTHATYVKQLKAGESVSYGATYTAKEDEWVATLPVGYADGYPRRMQGF-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 + G +LG++ MD M + + G + G +I + Sbjct: 299 ----------YVLVDGQRCEVLGRVCMDQMMVRLPKEYPV--GTEAVLMGRSLDQEITVT 346 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 DVA + T NY++L +G R + Y Sbjct: 347 DVAEYAHTINYEILTGMGARLHRRY 371 >gi|255319496|ref|ZP_05360710.1| alanine racemase [Acinetobacter radioresistens SK82] gi|262378480|ref|ZP_06071637.1| alanine racemase [Acinetobacter radioresistens SH164] gi|255303436|gb|EET82639.1| alanine racemase [Acinetobacter radioresistens SK82] gi|262299765|gb|EEY87677.1| alanine racemase [Acinetobacter radioresistens SH164] Length = 356 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 23/364 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ A+ ++VK NAYG G + AL +F V +EE ++ Sbjct: 8 IDSQALQYNLNRVKQLAPTAKIVSMVKANAYGHGIKDCLAAL--NSTDNFGVACLEEALE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R Q I ++ GI +E + S+ K + ++ Sbjct: 66 IRKLGYQQPITLIEGIFSEEEMDSVIQYGLECVIHQSAQLDWLKARKEEYITKNLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E ++ ++ + + + A AD +N Q +F + Sbjct: 126 LNSGMNRLGFKVPEIIEIINSLKAEGFSCVLAMHFANADAD---HPLNEQQKTQFLQVKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIIL 244 + AS +S+ I P +F RPGI LYG + +KS ++ V+T +A II Sbjct: 183 ACDPVLASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKSAHELDLKPVMTFDAAIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + + GE V YG ++D IA+ +IGY DGYP I Sbjct: 243 LNQIQTGEAVGYGSTFVASQDMQIAIVSIGYGDGYPRAF-----------IKPNYVMINN 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+++MDM D++ ++ +G ++++G +D+VA A+GT Y+LL R+ R Sbjct: 292 KPAPVIGRVSMDMIAVDVSGL-TVTLGTQVELWGKQRLVDEVAEANGTIGYELLCRLSNR 350 Query: 365 YAKF 368 + Sbjct: 351 PKRI 354 >gi|300857828|ref|YP_003782811.1| alanine racemase [Corynebacterium pseudotuberculosis FRC41] gi|300685282|gb|ADK28204.1| Alanine racemase [Corynebacterium pseudotuberculosis FRC41] gi|302330118|gb|ADL20312.1| Alanine racemase [Corynebacterium pseudotuberculosis 1002] Length = 370 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 156/376 (41%), Gaps = 22/376 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L +IDL A+ +N + + A+ VVK + Y G ++A + G F V Sbjct: 2 NLLEARIDLAAIAHNTRLIKDKAAAQGAQLMCVVKADGYNHGAVEVATVMEENGADQFGV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 ++ E + LR ++ I + S+ + + Sbjct: 62 ATIGEALALREGGIESSILSWIWSPEQDLGAAITAEIDLAAISLEHVKALVRASESYGKK 121 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++VDTG +R G+ Q+ + + + Q++ + SH + AD+ S Q Sbjct: 122 PVRVTVKVDTGLHRSGVDKQDWRESFCMLRDAENIQVTGVFSHFSSADESDSTETEQQER 181 Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F I + + +A+S L P+ +F + RPG++LYG +SH ++ Sbjct: 182 AFLNAIELGRSLGLELPVNHIANSPATLNRPDLYFDMVRPGLALYGHEPIPGESHGLREA 241 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ R+ +++ GE SYG + +D + V +GYADG P + G Sbjct: 242 MSWVGRVTVVKPIARGEGTSYGLTWRAEQDGYLCVVPVGYADGLPRSAQGHL-------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTT 353 + I G P +G++ MD + + ++ + GD I GP + ++A A GT Sbjct: 294 ---EITIGGRRYPQVGRVCMDQIVVALGENPYGVAQGDEAVILGPTGMTATELATAMGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+L+ R R + + Sbjct: 351 NYELVCRPCGRTVRVF 366 >gi|190149523|ref|YP_001968048.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914654|gb|ACE60906.1| alanine racemase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 374 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 165/380 (43%), Gaps = 31/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + + A++K NAYG G A L + V+ F V Sbjct: 2 KPATATISREALRHNIELIKTFTPQQKLLAMIKANAYGQGLLPAADTLADL-VEGFGVAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIPVIS------------SVP 107 + E ++++ +I ++ G +E FDT + Sbjct: 61 LREALEIQETGYTGKILLIEGFFDREELLKTLSRRFDTVIHCQEQLELLEQVAKEWQQEQ 120 Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 Q F+ + L++DTG +RLG+ ++ F L + +SH + A Sbjct: 121 QKGFWKRKAKIYFPINVWLKIDTGMHRLGVHPEKVDMFYQRLKACPLVESISFVSHFSRA 180 Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 D+P Q+ F S Y E S+++SSGIL H+ RPGI ++G + Sbjct: 181 DEPDCGYTEKQIAVFEAATSPYPTHERSISASSGILYWKQAHYDWVRPGIIMHGISPHYT 240 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + V+T + +I +R AGE V YGG +D+ + V A+GY DGYP Sbjct: 241 PITDLGFKPVMTLASSLIAVRTHKAGEPVGYGGAWVSDKDTKLGVVAMGYGDGYPRNA-- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G +VPI+G+++MDM D+ +VGD + +G D+ +++ Sbjct: 299 ---------PEGTPVLVNGRIVPIVGRVSMDMLTVDLGADSQDKVGDEVIFWGKDLLIEE 349 Query: 346 VALASGTTNYDLLVRIGTRY 365 VA G +Y+L+ ++ R Sbjct: 350 VAQHIGVISYELITKLTPRV 369 >gi|307729311|ref|YP_003906535.1| alanine racemase [Burkholderia sp. CCGE1003] gi|307583846|gb|ADN57244.1| alanine racemase [Burkholderia sp. CCGE1003] Length = 356 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 154/367 (41%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I +AL NN + ++ AVVK NAYG G + P L F + Sbjct: 3 RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE VKLR I +L G P +I +L + S QL Sbjct: 61 LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + ++ + + +++H + AD + Q+E F Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLMTHFSDADSERG--VAHQMEAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G SLA+S+ L P HF RPGI +YG + + +Q +T Sbjct: 178 RGAQGIAGAR-SLANSAATLWHPQSHFDWVRPGIIMYGASPSGVSAAIEGTGLQPAMTLA 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G+ V YG K I V A GYADGYP G Sbjct: 237 SELIAVQSVPEGQTVGYGSLFKARAPMRIGVVACGYADGYPR-----------VAPEGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+T + VG ++++G + +DDVA A GT Y+L+ Sbjct: 286 VIVDGVRTRIVGRVSMDMLTVDLTPVPTANVGSRVELWGTSLPIDDVARACGTIGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|291614600|ref|YP_003524757.1| alanine racemase [Sideroxydans lithotrophicus ES-1] gi|291584712|gb|ADE12370.1| alanine racemase [Sideroxydans lithotrophicus ES-1] Length = 353 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 103/370 (27%), Positives = 179/370 (48%), Gaps = 22/370 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ IDL+AL+NN + ++R AV+K NAYG G ++A AL + F + Sbjct: 2 SRPIQAHIDLSALQNNLRVARR-TASSRIMAVIKANAYGHGLLRVAEALNE--AEGFALL 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 V + + LR + I +L G +E ++ + L VI S QL S Sbjct: 59 DVRDAIALREAGFRQTILLLEGFFDAEELPLLAEYELGSVIHSTRQLAMLDACPRRN-SL 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+++TG NRLG + ++ + +++H + AD+P + QLE F Sbjct: 118 EVWLKINTGMNRLGFAPEQVPAAMEKLRKHPAVRDITLMTHFSHADEPEG--VAEQLELF 175 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239 + L + Y+ + SLA+S+ +L P+ H + RPGI LYG + + S ++ V+T Sbjct: 176 KGLTAAYR-LPRSLANSAALLRYPSTHSEWVRPGIMLYGASPFADASAQQLGLRPVMTLT 234 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +R+ AG+ V Y G + + I A GYADGYP G Sbjct: 235 SEIISVRELKAGDRVGYAGLFRADKTMRIGTVACGYADGYPRHA-----------PTGTP 283 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G LG+++MDM D+++ ++G + ++G + +++VA ++GT +Y+L+ Sbjct: 284 IQVNGQRTRTLGRVSMDMLSVDLSEIPDADIGSPVTLWGTGLSVEEVAKSAGTISYELMC 343 Query: 360 RIGTRYAKFY 369 + R Y Sbjct: 344 ALTARVPVKY 353 >gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium psychrophilum JIP02/86] gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase [Flavobacterium psychrophilum JIP02/86] Length = 817 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 161/370 (43%), Gaps = 21/370 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L A+ +N + L+ + +VK YG G +IA L + V V +E Sbjct: 457 LEINLNAISHNLNYFKSKLNPKTKIMVMVKAFGYGSGSFEIAKLLAHHKVNYLGVAFADE 516 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G++LR Q I VL I NL P I S+ L + K+ S+P Sbjct: 517 GIELRQAGIQLPIMVLNPEMTS-FPSIIQYNLEPEIYSIRGLKAFIKITQQKELTSYPIH 575 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 ++++TG NRLG Q + + I+SHLA +DD Q+ F T Sbjct: 576 IKINTGMNRLGFDAQIIPELISILQKHDSVLVKSILSHLAASDDLAQDIFTRKQISDFDT 635 Query: 185 LISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + ++++S I P F + R GI LYG ++ N++ ++ V T + Sbjct: 636 ISNKITTKLKINPIRHISNTSAISNYPQAQFDMVRLGIGLYGVSNDANETKKLENVGTLK 695 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I IR +G+ V Y + + + + IA IGYADG G Sbjct: 696 SIISQIRNLNSGQSVGYNRRFMVKKPTTIATIPIGYADGISRAWGNEV----------GY 745 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + PI+G I MDM M D+T + G+ + IFG + +A A+ T Y++L Sbjct: 746 VLVNEQKAPIVGSICMDMLMIDVTKI-NCSEGNQVIIFGKTPSVTTIAKATKTIPYEILT 804 Query: 360 RIGTRYAKFY 369 I +R + + Sbjct: 805 SISSRVKRVF 814 >gi|170696497|ref|ZP_02887622.1| alanine racemase [Burkholderia graminis C4D1M] gi|170138600|gb|EDT06803.1| alanine racemase [Burkholderia graminis C4D1M] Length = 356 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 154/367 (41%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I +AL NN + ++ AVVK NAYG G + P L F + Sbjct: 3 RPLSATIHTSALANNLAVARRYAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE VKLR I +L G P +I +L + S QL Sbjct: 61 LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + ++ + + +++H + AD + Q+E F Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLMTHFSDADSERG--VAHQMEAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G SLA+S+ L P HF RPGI LYG + + +Q +T Sbjct: 178 RGAQGIAGAR-SLANSAATLWHPQSHFDWVRPGIILYGASPSGVSAAIQGTGLQPAMTLA 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G+ V YG K I V A GYADGYP G Sbjct: 237 SELIAVQNIAEGQTVGYGSLFKARGPMRIGVVACGYADGYPR-----------VAPEGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+T + VG ++++G + +DDVA A GT Y+L+ Sbjct: 286 VIVDGVRTRIVGRVSMDMLTVDLTPVPTANVGSRVELWGASLPIDDVARACGTIGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|253689861|ref|YP_003019051.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259710071|sp|C6DE79|ALR_PECCP RecName: Full=Alanine racemase gi|251756439|gb|ACT14515.1| alanine racemase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 360 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 23/374 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + I+ AL++N + L+ +++ A+VK NAYG G + A + + Sbjct: 1 MKT---ATAVINRRALRHNLQRIRQLAPDSQVVAIVKANAYGHGMIEAAHTFCD--ADCY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E + LR I +L G + ++ + L + S QL + + Sbjct: 56 GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQLAALEQ-ATLS 114 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++DTG +RLG+ + A F + + + Q I+SH + AD+P + Q Sbjct: 115 QPLRVWMKLDTGMHRLGVLPEHADAFWQRLTACRNVVQPVNIMSHFSRADEPEAGTTERQ 174 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 L F G + S+A+S GILL P H RPGI LYG + N+ Q Sbjct: 175 LTCFDAFTQGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + +I +R+ GE V YGG R++ + V A+GY DGYP Sbjct: 234 MTFTSHLIAVREHHTGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPR-----------CAP 282 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G I G VP+ G+++MDM D+ +VGD + ++GP + ++ +A +G + Y Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITVDLGPDAQDKVGDEVILWGPTLPVERIAAHTGASAY 342 Query: 356 DLLVRIGTRYAKFY 369 +L+ R+ R A Y Sbjct: 343 ELITRLTQRTALEY 356 >gi|163119246|ref|YP_077790.2| D-alanine racemase [Bacillus licheniformis ATCC 14580] gi|145902752|gb|AAU22152.2| D-alanine racemase [Bacillus licheniformis ATCC 14580] Length = 389 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 155/378 (41%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDLTALK N +M G + R AVVK NAYG G ++A A G V Sbjct: 8 RKTWAEIDLTALKENVRNMKRHIGEHVRLMAVVKANAYGHGDAQVAKAALAEGASILAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSH 122 ++E + LR + I VL + I + +I SV L Sbjct: 68 LLDEALSLRAQGIEEPILVLGAVPTEYASIAAEKRIIVTGYSVGWLKDVLGFLNEAEAPL 127 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 Y L++DTG RLG + +E + + + + + +H A AD+ + ++QL+R Sbjct: 128 EYHLKIDTGMGRLGCKTEEEIKEMMEMTESNDKLNCTGVFTHFATADEKDTDYFNMQLDR 187 Query: 182 FRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 F+ LIS + ++S+ L F R GI +YG ++ V Sbjct: 188 FKELISPLPLDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDELPFRLREV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + ++K GE VSYG RD I +GYADG+ L Sbjct: 248 FSLHTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRL------------ 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G + I G I G+I MD M + + + G + + G I +D++A Sbjct: 296 AGTEVLIDGKRQKIAGRICMDQFMISLAEEYPV--GTKVTLIGKQKDEWISVDEIAQNLQ 353 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I +R + + Sbjct: 354 TINYEITCMISSRVPRMF 371 >gi|167586833|ref|ZP_02379221.1| alanine racemase [Burkholderia ubonensis Bu] Length = 356 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 150/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G + P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRYAGQSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD + QL F Sbjct: 121 QLKMNSGMNRLGYTPEKYRAAWERARACHGIGQITLMTHFSDADSERG--VAEQLAAFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 H G SLA+S+ +L P HF RPGI LYG + ++ +T + Sbjct: 179 GAEHIAGAR-SLANSAAVLWHPGTHFDWVRPGIMLYGASPSGRFADIADTGLKPTMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQSIGYGSTFSAQAQMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G ++ +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGSRVELWGNELPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAARVP 352 >gi|322418170|ref|YP_004197393.1| alanine racemase [Geobacter sp. M18] gi|320124557|gb|ADW12117.1| alanine racemase [Geobacter sp. M18] Length = 379 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 32/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S ++IDL AL++N+ + AVVK +AYG G + ++ L GV Sbjct: 1 MDS-RPTVVEIDLAALRHNFGLVQKKVPQGCGILAVVKADAYGHGFQYVSEELEKLGVDA 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV---PQLTFYSKLM 116 F V + EGV+LR+ + +L G++PG+E+ N+ + S+ L + + Sbjct: 60 FAVAFLAEGVQLRMSGIYRPVLILGGVYPGEERRCIGLNISTALYSLEQAAALDQAALEI 119 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--- 173 C L+VDTG RLG++ + +F K ++ I SH A AD+ Sbjct: 120 KCYRKAKVHLKVDTGMGRLGVTWDKVPEFLAELRQFKNLEMEGIFSHFASADELDPDGLA 179 Query: 174 VNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 +Q ERF + ++ +A+S+ IL L RPGI LYG + Sbjct: 180 FTKLQAERFNAAVVEARRQGFEPRYVHVANSAAILAADLPFCNLVRPGIILYGAAPSGDF 239 Query: 229 S--HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 S + V+ ++R+ +++ G +SYG + +LIA +GYADGY +L+ Sbjct: 240 SDENSALPVMKLKSRVAMLKWVEPGTTISYGRRYVARERALIASVPVGYADGYCRSLTN- 298 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----I 341 G+ I+G + G + MD M D+TD + VGD + + G D I Sbjct: 299 ----------KGEALIRGERARVAGTVCMDWIMLDVTDIEGVAVGDEVTLLGADPMGDRI 348 Query: 342 KLDDVALASGTTNYDLLVRIG-TRYAKFY 369 +++A +GT Y+++ I R + Y Sbjct: 349 SAEELAEKAGTIAYEIMCGISTRRVRRVY 377 >gi|197286571|ref|YP_002152443.1| alanine racemase [Proteus mirabilis HI4320] gi|227357646|ref|ZP_03841999.1| alanine racemase (biosynthetic) [Proteus mirabilis ATCC 29906] gi|194684058|emb|CAR45397.1| alanine racemase (biosynthetic) [Proteus mirabilis HI4320] gi|227162356|gb|EEI47360.1| alanine racemase (biosynthetic) [Proteus mirabilis ATCC 29906] Length = 363 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 21/370 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N+ + + ++ AVVK NAYG G + A L + F V + Sbjct: 4 ATAVIDRRALRHNFQHVRDYAPHSHLIAVVKANAYGHGLLETAYTLMD-DADCFGVARIG 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G I+ ++ V+ S QL Sbjct: 63 EALTLRSGGIVKPILLLEGFFDAVDLPILVVNHIETVVHSEEQLEALEN-ADLEEPVKVW 121 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFR 183 +++DTG +RLG+ +EA F K + Q ++SH + AD+P V Q++ F+ Sbjct: 122 MKLDTGMHRLGVRPEEAEAFYQRLCACKNVQQPVNLVSHFSRADEPDIPEVTQNQIQLFQ 181 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAE 239 I G + S+A+S+GIL P H+Q RPGI YG + + K + +T + Sbjct: 182 AFIQDKAG-DKSIAASAGILFWPQVHYQWVRPGIITYGISPTGDNRTGKDFGLTPAMTLK 240 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +I +RK AGE V YGG +D+ + V AIGY DGYP + G Sbjct: 241 TSLIAVRKHKAGEPVGYGGTWVSEKDTYLGVIAIGYGDGYPRSA-----------PSGTP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +I G VPI+G+++MDM D+ L VGD ++G + ++++A SG + Y+L+ Sbjct: 290 VWINGRKVPIVGRVSMDMISVDLGSELIDRVGDEAILWGDVLPVEEIAKYSGISAYELIT 349 Query: 360 RIGTRYAKFY 369 ++ +R Y Sbjct: 350 KLTSRVIMEY 359 >gi|288934755|ref|YP_003438814.1| alanine racemase [Klebsiella variicola At-22] gi|288889464|gb|ADC57782.1| alanine racemase [Klebsiella variicola At-22] Length = 356 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 158/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL+ N + + +R AVVK NAYG G ++ AL +G F + + Sbjct: 3 RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSAL--SGADGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + D + + Sbjct: 61 LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQAKLRAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A++P V ++ Sbjct: 121 YLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---E 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SLA+S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ GE + YGG + +++ I + A GYADGYP G Sbjct: 238 EIIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPR-----------VAPSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +G ++++G +IK+DDVA +SGT Y+L+ Sbjct: 287 LVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|157828002|ref|YP_001494244.1| alanine racemase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932698|ref|YP_001649487.1| alanine racemase [Rickettsia rickettsii str. Iowa] gi|166969428|sp|A8GQR1|ALR_RICRS RecName: Full=Alanine racemase gi|189027390|sp|B0BW55|ALR_RICRO RecName: Full=Alanine racemase gi|157800483|gb|ABV75736.1| alanine racemase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907785|gb|ABY72081.1| alanine racemase [Rickettsia rickettsii str. Iowa] Length = 355 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 182/365 (49%), Gaps = 21/365 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+L+ +KNN+ + + + A VK N YGLG +I+ AL + FFV S EEG Sbjct: 6 VEINLSTIKNNYLLLQDVCKTSLVGAAVKANGYGLGAIQISKALIEENCRHFFVASSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V LR I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 66 VNLRNALGLDINILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGLS E ++ K L IISHLA +++ + N QL RF+ + Sbjct: 126 HFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKAYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ ++ASLA+S GI LG +YHF L RPG +LYG VT +A II ++ Sbjct: 186 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPLTK------NPVTLKAPIIHLQ 239 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + Y RDS+IA +GYADG+ S G+ FI Sbjct: 240 NLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQ-----------GEVFINSRS 288 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MD+ D+TD E+ G +I G + +A GT Y++L +G+R Sbjct: 289 VPIVGRVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPNKIASIIGTIGYEVLTNLGSR 348 Query: 365 YAKFY 369 Y + Y Sbjct: 349 YKRKY 353 >gi|311068669|ref|YP_003973592.1| alanine racemase [Bacillus atrophaeus 1942] gi|310869186|gb|ADP32661.1| alanine racemase [Bacillus atrophaeus 1942] Length = 393 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 171/384 (44%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ ++ AVVK NAYG G ++A G + V Sbjct: 6 REVWIEVNLDAIKKNLRAIRHHIPKKSKIMAVVKANAYGHGSVEVARHALENGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 SVEEG+ LR A I VL K N+ V + ++++ Sbjct: 66 SVEEGIVLRKAGITAPILVLGFTSLSCVKESAAWNIELSAFQVDWIKEANEILKNEARPN 125 Query: 124 Y---ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L + K + + I +H + AD+P + + +Q Sbjct: 126 RLGIHINVDTGMGRLGVRTKEELLAVVNALTASKFLRWAGIFTHFSTADEPDTTLTKLQH 185 Query: 180 ERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230 ++F + +GIE +++++ + P + + R GI LYG Sbjct: 186 DKFIRFLRFLKNQGIELPTVHMSNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKQLHLV 245 Query: 231 PMQTVVTAEARIILIRKAL-AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ ++ +ARI ++ +SYG D +IA +GYADGY LS Sbjct: 246 KLEPALSLKARIAYVKTMRTEPRTISYGATYIAEPDEVIATLPVGYADGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP++G++TMD+ M + +S + G+ + I+G +I +D+ Sbjct: 303 --------GFVLHRGRRVPVVGRVTMDLIMVSLGESEG-KQGEEVVIYGQQKGAEISVDE 353 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY+++ + R +FY Sbjct: 354 VAEMLNTINYEVVSTLSRRIPRFY 377 >gi|154686685|ref|YP_001421846.1| YncD [Bacillus amyloliquefaciens FZB42] gi|154352536|gb|ABS74615.1| YncD [Bacillus amyloliquefaciens FZB42] Length = 393 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 165/384 (42%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++DL A+K N ++ N + AVVK NAYG G ++A +G + V Sbjct: 6 REVWIEVDLDAIKKNVRAIRRHIPNTSKIMAVVKANAYGHGSVEVARQALESGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---V 120 SVEEG+ LR A I VL K N+ V + ++++ Sbjct: 66 SVEEGIVLRRAGITAPILVLGFTALSCVKKSAVWNITLSAFQVSWIKKANRILEKEADSK 125 Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L + I +H + AD+P + + +Q Sbjct: 126 RLSIHINVDTGMGRLGVRTEEDLLAVVKALKSSTYLSWDGIFTHFSTADEPDTELTMLQH 185 Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----H 230 E+F + + K + + +++ + P + + R GI LYG + Sbjct: 186 EKFISFLRFLKNQDITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSASIKELNLV 245 Query: 231 PMQTVVTAEARIILIR-KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +ARI ++ VSYG +IA IGY DGY LS Sbjct: 246 DLTPALSLKARIAYVKAMVTDPRTVSYGATYIAEPGEIIATIPIGYGDGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + ++ + G+ + I+G +I +D+ Sbjct: 303 --------GFILHRGRRVPVAGRVTMDMIMVSLGENEG-KQGEEVVIYGKQQGAEISVDE 353 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT +Y++L + R +FY Sbjct: 354 IAEMLGTISYEVLSVLSRRVPRFY 377 >gi|325263860|ref|ZP_08130593.1| alanine racemase [Clostridium sp. D5] gi|324030898|gb|EGB92180.1| alanine racemase [Clostridium sp. D5] Length = 387 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 154/385 (40%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + ++DL A+ N M G A+ AV+K + YG G IA + Sbjct: 1 MKQFNRVYARVDLDAIAYNMEQMKQRIGEGAQIIAVIKMDGYGHGAVPIAEMFEENNYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + S+EE + LR + I VL I P Q + + ++ + SK + Sbjct: 61 GYATASLEEAIALRKEGIKKPILVLGCIFPEQYEEMILNDIRATVYMKETAEGISKAAAA 120 Query: 119 -GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G ++VDTG RLG +++ + +L + +H A AD+ Sbjct: 121 LGRKVRIHIKVDTGMGRLGFLPDTDSVKAIREISSLPNIELEGMFTHFAKADETDKSYTY 180 Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q E+F + + +S+GI+ P+ L R GIS YG K Sbjct: 181 KQHEKFVWMKDALEAEGADITYYHCDNSAGIIDFPDMKHNLVRAGISTYGMYPSDEVSQK 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ + + + +++ AG +SYGG + +A +GY DGY LS Sbjct: 241 AVDLKPALELISHVTFVKEVEAGTSISYGGTFTAPKRMKVATIPVGYGDGYSRGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 I+G ILG++ MD M D+TD + D + G I ++ Sbjct: 298 --------KADVLIRGRRARILGRVCMDQFMVDVTDIPDVRFMDQAVLIGFDGEEHIPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 +++ G NY+ + +G R + Y Sbjct: 350 ELSGLCGRFNYEFVCCLGKRIPRVY 374 >gi|42779353|ref|NP_976600.1| alanine racemase [Bacillus cereus ATCC 10987] gi|42735268|gb|AAS39208.1| alanine racemase [Bacillus cereus ATCC 10987] Length = 389 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSGVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|319764875|ref|YP_004128812.1| alanine racemase [Alicycliphilus denitrificans BC] gi|330827080|ref|YP_004390383.1| alanine racemase [Alicycliphilus denitrificans K601] gi|317119436|gb|ADV01925.1| alanine racemase [Alicycliphilus denitrificans BC] gi|329312452|gb|AEB86867.1| alanine racemase [Alicycliphilus denitrificans K601] Length = 358 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 163/369 (44%), Gaps = 18/369 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R DL AL+ N+ A+ G + AA +K NAYG G + A AL F V Sbjct: 2 SRPARADFDLAALRANYAHAKAVHGG-KVAATLKANAYGHGAVECARAL-AGQADAFAVA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYS--KLMSCGV 120 +E ++LR I VL G + + + + V+ QL + G Sbjct: 60 FAQEAMELREAGLTEPILVLEGAFGMDDVALAQRHGLWLVVHQEEQLRMLESLQDRGGGA 119 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++DTG +R G++ +A +++HLA AD+P + + QL Sbjct: 120 GVHAWLKIDTGMHRAGVAPGQARALWQRLAACDKVAGITLMTHLASADEPGNPMTGRQLA 179 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F G S+A+S+G+L H RPGI LYG + S +Q V+ + Sbjct: 180 VFADATQGLPG-PRSIANSAGVLGWKGAHQDWARPGIMLYGADPRGMPSDVLQPVMRLAS 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + + R GE + YGG R + + + A+GYADGYP V G Sbjct: 239 EVFVERWLAPGEALGYGGSFVADRPTRVGLVAMGYADGYPR-----------VVPSGTPV 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + I+G++ MDM D+TD G ++++G + ++ VA A+GT Y+LL Sbjct: 288 AVDGRLTRIIGRVAMDMLTVDLTDLPGAGPGAQVELWGSQVSVNQVAAAAGTIAYELLCN 347 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 348 V-KRVRRVY 355 >gi|260663736|ref|ZP_05864624.1| alanine racemase [Lactobacillus fermentum 28-3-CHN] gi|260551787|gb|EEX24903.1| alanine racemase [Lactobacillus fermentum 28-3-CHN] Length = 373 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 151/385 (39%), Gaps = 30/385 (7%) Query: 1 MHSNEFLR--LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + L +DL AL N L+ +R AVVK NAYG G +A AL AGV Sbjct: 1 MVSARLRKTDLVVDLKALGANVQRQREQLAPGSRILAVVKANAYGNGMVPVASALARAGV 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSK 114 + F V ++E ++LR Q + VL + + + S+ +K Sbjct: 61 EGFCVALLDEAIELRDSGIQELVLVLGITPVEYAPLAAAQGISLTVGSLEWLKNYQRLAK 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L +DTG R+G + E + I +H A AD+ + Sbjct: 121 EEGIKHPLKVHLALDTGMGRIGFTTPEDFKEALQLVAAPCFEFEGIFTHFATADEEDATY 180 Query: 175 NSVQLERFRTLISHYKGIEASLA--SSSGILLGPNYH-FQLTRPGISLYGGTDK---INK 228 Q RF ++ + +S+ L R GIS+YG I + Sbjct: 181 FERQRARFDDFMAVVTKRPPFVHVANSATGLWHQKSIVANTIRMGISMYGANPSGVGIKE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 S P++ V + +++ AGE VSYG D +A +GYADGYP + G Sbjct: 241 SFPLEPVTSLVTHATYVKQLKAGESVSYGATYTAKEDEWVATLPVGYADGYPRRMQGF-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 + G +LG++ MD M + + G + G +I + Sbjct: 299 ----------YVLVDGQRCEVLGRVCMDQMMVRLPKEYPV--GTEAVLMGRSLDQEITVT 346 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 DVA + T NY++L +G R + Y Sbjct: 347 DVAEYAHTINYEILTGMGARLHRRY 371 >gi|206580802|ref|YP_002237825.1| alanine racemase [Klebsiella pneumoniae 342] gi|206569860|gb|ACI11636.1| alanine racemase [Klebsiella pneumoniae 342] Length = 356 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL+ N + + +R AVVK NAYG G ++ AL +G F + + Sbjct: 3 RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSAL--SGADGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + D + + Sbjct: 61 LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQAKLRAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A++P V ++ Sbjct: 121 YLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---E 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SLA+S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ GE + YGG + +++ I + A GYADGYP G Sbjct: 238 EVIGVQNLRPGEAIGYGGLYRTSQEQRIGIVACGYADGYPR-----------VAPSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +G ++++G +IK+DDVA +SGT Y+L+ Sbjct: 287 LVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|310659416|ref|YP_003937137.1| alanine racemase [Clostridium sticklandii DSM 519] gi|308826194|emb|CBH22232.1| Alanine racemase [Clostridium sticklandii] Length = 384 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 168/381 (44%), Gaps = 26/381 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 H+ +I+L +K N++++ L + AV+K NAYG G + A L G F Sbjct: 3 HTFRPTWAEINLDHVKANYNNIRKLLKPETKFCAVIKANAYGHGAVQYAKVLDKEGADYF 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V EE ++LR + I L + + K + N+ I S + S++ Sbjct: 63 AVAVCEEALELRQNSITKPIMCLGYVPEDRFKDMMQNNVDITIYSYEKAALLSQIAKDNN 122 Query: 120 VSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++ +++D+G +RLGL EA+D + ++ I +H A ADD Q Sbjct: 123 LNAKIHIKLDSGMSRLGLQCDNEAVDEILKISTLENLEIVGIFTHFALADDKDLSYTHEQ 182 Query: 179 LERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230 + + +++ + + +S+ ++ P YH + RPGI LYG + Sbjct: 183 YKNYSFVVNELETKGLKIPIKHVCNSAATMMLPEYHLDMVRPGIILYGHYPSDDVDKSKV 242 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + + ++ + ++K G +SYG + + + +IA IGYADG+ LSG Sbjct: 243 KLYPAMALKSTVAHVKKLEEGRGISYGHKYRSKENEIIATIPIGYADGFTRMLSGQAD-- 300 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVAL 348 + MVP++G+I MD M + +VGD I IF + + ++ A Sbjct: 301 ---------VKLNDKMVPVVGRICMDQCMLSL--EEEAKVGDQITIFSDEEGMDIERFAQ 349 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+LL + R + Y Sbjct: 350 RLGTINYELLCMVQRRVPRIY 370 >gi|52144988|ref|YP_081841.1| alanine racemase [Bacillus cereus E33L] gi|51978457|gb|AAU20007.1| alanine racemase [Bacillus cereus E33L] Length = 389 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|49479127|ref|YP_034579.1| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476000|ref|YP_893151.1| alanine racemase [Bacillus thuringiensis str. Al Hakam] gi|196036026|ref|ZP_03103427.1| alanine racemase [Bacillus cereus W] gi|196041155|ref|ZP_03108451.1| alanine racemase [Bacillus cereus NVH0597-99] gi|196046235|ref|ZP_03113462.1| alanine racemase [Bacillus cereus 03BB108] gi|218901445|ref|YP_002449279.1| alanine racemase [Bacillus cereus AH820] gi|225862294|ref|YP_002747672.1| alanine racemase [Bacillus cereus 03BB102] gi|228912983|ref|ZP_04076626.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925498|ref|ZP_04088591.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931744|ref|ZP_04094645.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944050|ref|ZP_04106433.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119908|ref|ZP_04249166.1| Alanine racemase [Bacillus cereus 95/8201] gi|229182639|ref|ZP_04309884.1| Alanine racemase [Bacillus cereus BGSC 6E1] gi|49330683|gb|AAT61329.1| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415225|gb|ABK83644.1| alanine racemase [Bacillus thuringiensis str. Al Hakam] gi|195991395|gb|EDX55362.1| alanine racemase [Bacillus cereus W] gi|196022980|gb|EDX61660.1| alanine racemase [Bacillus cereus 03BB108] gi|196028090|gb|EDX66701.1| alanine racemase [Bacillus cereus NVH0597-99] gi|218535948|gb|ACK88346.1| alanine racemase [Bacillus cereus AH820] gi|225790248|gb|ACO30465.1| alanine racemase [Bacillus cereus 03BB102] gi|228600834|gb|EEK58409.1| Alanine racemase [Bacillus cereus BGSC 6E1] gi|228663546|gb|EEL19128.1| Alanine racemase [Bacillus cereus 95/8201] gi|228815624|gb|EEM61862.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827924|gb|EEM73657.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834160|gb|EEM79704.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846658|gb|EEM91667.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 389 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|308068000|ref|YP_003869605.1| alanine racemase 1 [Paenibacillus polymyxa E681] gi|305857279|gb|ADM69067.1| Alanine racemase 1 [Paenibacillus polymyxa E681] Length = 398 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 165/391 (42%), Gaps = 32/391 (8%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQ 58 M + R +I+L L N+ + + V VK NAYG G +I+ L G Sbjct: 1 MQAQYRSTRAEINLDHLGANYEAFRKALPADKLILVCVKANAYGHGAVEISKELERLGAD 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V ++E ++LR Q I VL P + ++ ++ + S L +L Sbjct: 61 YLSVAFLDEALELRHAGVQLPILVLGYTSPDAVQTAWEHDISLTVFSEEVLESIRRLDRQ 120 Query: 119 G--VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G +++D+G RLGL +EA+ F + + L + +H A AD+ Sbjct: 121 GSERKLKVHIKIDSGMGRLGLLPGEEAMAFVRQANELEQVLLEGMYTHFARADEEDKSYT 180 Query: 176 SVQLERFR--TLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 +Q +RFR +GI + +S+ + P+ + R GIS+YG + Sbjct: 181 LLQYDRFRGVAQALREQGITIPIIHTGNSAATIDTPSLSPNMVRIGISIYGLYPSDEVNR 240 Query: 231 PMQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 V++ + ++ + G VSYG + + + I IGYADGY LSG Sbjct: 241 QAIELLPVLSLKTAVVYTKTLPPGWGVSYGTRYVTSSEERIGTLPIGYADGYSRMLSGKI 300 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD--- 340 + I+G VP+LG I MD M + D+ I+ G+ + + G Sbjct: 301 -----------EVLIRGRRVPVLGTICMDQCMVSLQSFAEDAEEIQTGEEVVLIGQQSGE 349 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 I D++A GT +Y+++ I R + YT Sbjct: 350 TIAADELASKLGTIHYEVICMIADRVPRVYT 380 >gi|52784371|ref|YP_090200.1| hypothetical protein BLi00551 [Bacillus licheniformis ATCC 14580] gi|52346873|gb|AAU39507.1| Alr [Bacillus licheniformis ATCC 14580] Length = 390 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 155/378 (41%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDLTALK N +M G + R AVVK NAYG G ++A A G V Sbjct: 9 RKTWAEIDLTALKENVRNMKRHIGEHVRLMAVVKANAYGHGDAQVAKAALAEGASILAVA 68 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSH 122 ++E + LR + I VL + I + +I SV L Sbjct: 69 LLDEALSLRAQGIEEPILVLGAVPTEYASIAAEKRIIVTGYSVGWLKDVLGFLNEAEAPL 128 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 Y L++DTG RLG + +E + + + + + +H A AD+ + ++QL+R Sbjct: 129 EYHLKIDTGMGRLGCKTEEEIKEMMEMTESNDKLNCTGVFTHFATADEKDTDYFNMQLDR 188 Query: 182 FRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 F+ LIS + ++S+ L F R GI +YG ++ V Sbjct: 189 FKELISPLPLDRLMVHSSNSAAGLRFREQLFNAVRFGIGMYGLAPSTEIKDELPFRLREV 248 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + ++K GE VSYG RD I +GYADG+ L Sbjct: 249 FSLHTELTHVKKIKKGESVSYGATYTAQRDEWIGTVPVGYADGWLRRL------------ 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G + I G I G+I MD M + + + G + + G I +D++A Sbjct: 297 AGTEVLIDGKRQKIAGRICMDQFMISLAEEYPV--GTKVTLIGKQKDEWISVDEIAQNLQ 354 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I +R + + Sbjct: 355 TINYEITCMISSRVPRMF 372 >gi|257083766|ref|ZP_05578127.1| alanine racemase [Enterococcus faecalis Fly1] gi|256991796|gb|EEU79098.1| alanine racemase [Enterococcus faecalis Fly1] Length = 371 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVQFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|325473141|gb|EGC76337.1| alanine racemase [Treponema denticola F0402] Length = 379 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 162/384 (42%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I L L+ N + L+ N + VK +AYG G ++A A AGV V Sbjct: 2 RATKAIIHLDNLQYNIKEIKKRLNKNVKICLPVKADAYGHGAVRVAVAAIRAGVSYLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 S++E V+LR A I L + + ++ P++ + ++ Sbjct: 62 SIQEAVELREAGIVAPIISLSLPVLEEIPELLKYDIEPLVIDEEFINDLNRFAKKLNKKA 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQL 179 L++DTG R+G S EA+ + +L + +H A + D+ + Q+ Sbjct: 122 GVHLKIDTGMRRIGCSPMEAVKLAVQIDRAENLELKGVCTHFAVSDSTDEKNIKFTKKQI 181 Query: 180 ERFRTLISHYK--GIEASLASSSGI---LLGPNYHFQLTRPGISLYGG--TDKINKSHPM 232 F+ I K GI L ++ L P F + RPGI +YG + +N + Sbjct: 182 SVFKDSIKEIKKAGINPGLIHAANSGAVLQYPEAQFDMVRPGILVYGYAPSPSLNSLIDL 241 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ +++LI+K VSY +++ +A IGYADG +LSGL Sbjct: 242 KPVMELVTQVVLIKKIEKDTSVSYDRCWTAEKETFVATLPIGYADGLMRSLSGL------ 295 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-------DIKLDD 345 K I PI+G+I MD M DI S ++ D + IFGP + D Sbjct: 296 ------KVRIGKDFFPIIGRICMDQCMIDIGASPWVQRWDEVCIFGPVSKEHPKNNTAQD 349 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A +GT Y+L I R + + Sbjct: 350 LAKIAGTIPYELTCDINKRVPRIF 373 >gi|167897553|ref|ZP_02484955.1| alanine racemase [Burkholderia pseudomallei 7894] gi|167922125|ref|ZP_02509216.1| alanine racemase [Burkholderia pseudomallei BCC215] Length = 374 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHCDEQLKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|328554160|gb|AEB24652.1| alanine racemase [Bacillus amyloliquefaciens TA208] Length = 393 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 164/384 (42%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++DL A+K N ++ N ++ AVVK NAYG G ++A +G + V Sbjct: 6 REVWIEVDLDAIKKNIRAIRRHIPNKSKIMAVVKANAYGHGSVEVARQALESGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---V 120 SVEEG+ LR A I VL K N+ V + ++++ Sbjct: 66 SVEEGIVLRRAGITAPILVLDFTALSCVKKSAVWNITLSAFQVSWIKKANQILEEEAVSK 125 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ + + L + I +H + AD+P + + +Q Sbjct: 126 RLSIHINVDTGMGRLGVRTEKDLLAVVKALKSSTYLSWDGIFTHFSTADEPDTELTMLQH 185 Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----H 230 E+F + + + +++ + P + + R GI LYG Sbjct: 186 EKFISFLRFLKDQGITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKELDLV 245 Query: 231 PMQTVVTAEARIILIR-KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +ARI ++ VSYG +IA IGYADGY LS Sbjct: 246 KLTPALSLKARIAYVKAMVTEPRTVSYGATYIAEPGEIIATIPIGYADGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + +S + G+ + I+G +I +D+ Sbjct: 303 --------GFILYRGRRVPVAGRVTMDMIMVSLGESEG-KQGEEVVIYGKQKGAEISVDE 353 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+++ + R +FY Sbjct: 354 IAEMLGTINYEVVSTLSRRVPRFY 377 >gi|170751205|ref|YP_001757465.1| alanine racemase [Methylobacterium radiotolerans JCM 2831] gi|170657727|gb|ACB26782.1| alanine racemase [Methylobacterium radiotolerans JCM 2831] Length = 377 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 197/365 (53%), Gaps = 16/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + A +G A AAVVK +AYGLG +++AP L AG + FFV V EG Sbjct: 22 LTIDLAALAENYRLLAARAGTATCAAVVKADAYGLGADRVAPVLAAAGCRHFFVAQVGEG 81 Query: 69 VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126 V LR + P A I VL G PG E D +L+PV++ + QL + P L Sbjct: 82 VALRSILGPGAVIAVLNGAAPGSEATCADHDLVPVLNDLSQLDGWQGLARRRARRLPAIL 141 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 QVDTG R G + E L L++SHLACA +P S VN+ QL FR + Sbjct: 142 QVDTGMARFGFAPDEVGALLDRPDALAGLDLRLVMSHLACAGEPDSPVNAAQLSVFRAVR 201 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + ASLA+SSGI LGP++HF L RPG +LYG + +PM+ V+ AR++ R Sbjct: 202 RRLPAVPASLAASSGIFLGPDFHFDLVRPGAALYGIAPQEGAPNPMRPVIGLRARVMQTR 261 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YG + RDS +A AIGYADG+ + GG + G Sbjct: 262 SVPAGTPVGYGHAATVARDSRLATVAIGYADGFFRS------------TAGGAAWFGGVR 309 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P++G+++MD + D+TD+ + G + I GP+ +D A A+GT Y++L +G R Sbjct: 310 LPVVGRVSMDSLVLDVTDAAPGTLGPGALVDIVGPERDVDAAAAAAGTIGYEVLTNLGHR 369 Query: 365 YAKFY 369 + + Y Sbjct: 370 FHRVY 374 >gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM 18228] gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM 18228] Length = 821 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL N + L + +VK +AYG G ++A L + V V +E Sbjct: 463 LEINLNALTANLNYYRNKLKPETKMVCMVKASAYGAGSFEVAKTLEDQRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 G LR I ++ K +FD L P + S L + + P Sbjct: 523 GADLRKAGIHCPIIIMDPEVSA-FKTMFDYKLEPEVYSFQMLEELIKAAEREGAANVPVH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 ++VDTG +RLG + + + I SHL +D D Q+E F Sbjct: 582 IKVDTGMHRLGFAPSDMPRLAERLHRQSTVIPRSIFSHLVGSDSDRFDPFTRRQIETFEA 641 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R G+ LYG N+ V T + Sbjct: 642 AAADLQKEFNHKIIRHICNTAGIERYPGAQFDMVRLGLGLYGIDPYTNRIL--HNVTTLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I A E V Y + L+RDS IA IGYADG L Sbjct: 700 TTILQIHDVPADETVGYSRKGVLSRDSRIATLPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGKKAPYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSDVLETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSGRVKRIY 818 >gi|306834227|ref|ZP_07467347.1| alanine racemase [Streptococcus bovis ATCC 700338] gi|304423800|gb|EFM26946.1| alanine racemase [Streptococcus bovis ATCC 700338] Length = 368 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 171/382 (44%), Gaps = 27/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + + IDL + N ++ A + + AVVK NAYG G +A A+++ V Sbjct: 1 MISSLHRPTKAVIDLDVICQNIDAVKANIPQDKKAFAVVKANAYGHGATNVAHAIHHL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L I P + + D ++ ++S L ++ Sbjct: 60 DGFCVSNIDEALELREAGIEETILILGVIMPDEVALARDYHVTLTVASQEWLDLANEQGI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ + + + K ++ I +H A AD+ + Sbjct: 120 SLAGLDVHLKVDSGMGRIGVRSLDEAENVIANLKKAGANVAGIFTHFATADEADDTKFNE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QLE F L+ + A + +S+ + F L R GI +YG +++ +P+ Sbjct: 180 QLEFFTNLVDNLSDKPAIVHASNSATSIWHSETIFNLVRLGIVMYGLNPSGTELDLPYPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++ AG V YG ++ IA IGYADG+ L G Sbjct: 240 KPALSLESSLVHVKTIPAGATVGYGATYTAQKEEYIATVPIGYADGWTRDLQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G+++MD + + L +G + + G + I D+A Sbjct: 295 -------VLVNGEFCEIVGRVSMDQITIRLPEKLP--IGTKVTLIGQESDKVISATDLAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 GT NY++L + R + Y+ Sbjct: 346 KRGTINYEVLCLLSDRIPRVYS 367 >gi|227520095|ref|ZP_03950144.1| alanine racemase [Enterococcus faecalis TX0104] gi|227072439|gb|EEI10402.1| alanine racemase [Enterococcus faecalis TX0104] Length = 371 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPQYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTESEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|312898652|ref|ZP_07758042.1| alanine racemase [Megasphaera micronuciformis F0359] gi|310620571|gb|EFQ04141.1| alanine racemase [Megasphaera micronuciformis F0359] Length = 403 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 150/382 (39%), Gaps = 26/382 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + + +IDL N + ++G R AVVK +AYG G ++ G Sbjct: 17 TKRPVWAEIDLDRAAENMREIRRITGKDRLVTAVVKADAYGHGAVMLSKVFLQNGADRLA 76 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 V+S++EG +LR A I +L + + + D ++ P + S +S+ G Sbjct: 77 VSSLDEGTELRRAKITAPILILGHTAGERAEELLDNDIEPAVFSYRDAEMFSRKAVETGR 136 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + DTG R+G EA++ + I +H + AD Q Sbjct: 137 EVKIHIAADTGMCRIGYVPSPEAIEEVKKIAALPGITMQGIFTHFSEADIADKEWAHEQH 196 Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 RF I KG +S+G L P++H ++ RPGI YG Sbjct: 197 SRFSAFIDALKGAGVTFNIHHCCNSAGTLELPDFHREMIRPGIIQYGYDASKEVLVTGTK 256 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V++ I ++ G+ V YG + IA IGYADGY LS Sbjct: 257 IKPVMSLRCCITHLKTIYEGDCVGYGRHFTAKGPTKIATLPIGYADGYNRALSSKID--- 313 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + G +G I MD M D++ ++VGD + +FG + D++A Sbjct: 314 --------VIVHGVRAHQVGNICMDQCMIDVSHIPDVKVGDEVVLFGEQGSECVSADEIA 365 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +++ I R + Y Sbjct: 366 DTCHTIIHEITCNINRRVPRVY 387 >gi|308174216|ref|YP_003920921.1| alanine racemase [Bacillus amyloliquefaciens DSM 7] gi|307607080|emb|CBI43451.1| alanine racemase [Bacillus amyloliquefaciens DSM 7] gi|328912552|gb|AEB64148.1| alanine racemase [Bacillus amyloliquefaciens LL3] Length = 393 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 164/384 (42%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++DL A+K N ++ N ++ AVVK NAYG G ++A +G + V Sbjct: 6 REVWIEVDLDAIKKNIRAIRRHIPNKSKIMAVVKANAYGHGSVEVARQALESGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---V 120 SVEEG+ LR A I VL K N+ V + ++++ Sbjct: 66 SVEEGIVLRRAGITAPILVLGFTALSCVKKSAVWNITLSAFQVSWIKKANQILEEEAVSK 125 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ + + L + I +H + AD+P + + +Q Sbjct: 126 RLSIHINVDTGMGRLGVRTEKDLLAVVKALKSSTYLSWDGIFTHFSTADEPDTELTMLQH 185 Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----H 230 E+F + + + +++ + P + + R GI LYG Sbjct: 186 EKFISFLRFLKDQGITLPTVHMCNTAAAIAFPEFSADMIRLGIGLYGLYPSAYIKELDLV 245 Query: 231 PMQTVVTAEARIILIR-KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +ARI ++ VSYG +IA IGYADGY LS Sbjct: 246 KLTPALSLKARIAYVKAMVTEPRTVSYGATYIAEPGEIIATIPIGYADGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + +S + G+ + I+G +I +D+ Sbjct: 303 --------GFILYRGRRVPVAGRVTMDMIMVSLGESEG-KQGEEVVIYGKQKGAEISVDE 353 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+++ + R +FY Sbjct: 354 IAEMLGTINYEVVSTLSRRVPRFY 377 >gi|251795108|ref|YP_003009839.1| alanine racemase [Paenibacillus sp. JDR-2] gi|247542734|gb|ACS99752.1| alanine racemase [Paenibacillus sp. JDR-2] Length = 394 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 162/385 (42%), Gaps = 32/385 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++I L AL N H+ R A VK NAYG G +IA GV V Sbjct: 6 RPTRVEISLDALNRNLHAFRGAMPEGRLLMASVKANAYGHGAVEIAREAERFGVDYLGVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP---VISSVPQLTFYSKLMSCGV 120 ++E ++LR I VL G P I I + + + G Sbjct: 66 FLDEALQLRHAGIATPILVL-GFVPADALAIARDKDITIALFREDILEAAAALPAQADGK 124 Query: 121 SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++D+G RLG+ EA+ F + + ++ + +H A AD+ Q Sbjct: 125 KLKAHIKIDSGMGRLGIIGKDEAIAFIRKALDVPQLEIEGMFTHYAKADETDKSYTRQQY 184 Query: 180 ERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 ERF + + + + + +S+ + P Y + R GIS+YG + Sbjct: 185 ERFHAVAEYVRSNKLPIRILHAANSAAGIDTPEYGGDMVRLGISMYGLYPSDEVSRERIK 244 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V++ ++ +++++K G +SYG + ++ I IGYADG+ LSG Sbjct: 245 LEPVLSLKSEVVMVKKTPPGWGISYGTRYVTKQEECIGTLPIGYADGFSRMLSG------ 298 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDI---TDSLSIEVGDYIQIF----GPDIKLD 344 ++G VP+ G I MD M + + ++E G+ + + G +I + Sbjct: 299 -----KAHVLVRGVKVPVRGTICMDQCMIALDPASADAAVEPGEEVVLIGRQGGEEISAE 353 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++AL GT NY++ + R + Y Sbjct: 354 ELALQLGTINYEVTCMLAARVPRVY 378 >gi|254247864|ref|ZP_04941185.1| Alanine racemase [Burkholderia cenocepacia PC184] gi|124872640|gb|EAY64356.1| Alanine racemase [Burkholderia cenocepacia PC184] Length = 356 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 149/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G + P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAESIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAARVP 352 >gi|291522358|emb|CBK80651.1| alanine racemase [Coprococcus catus GD/7] Length = 392 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 101/389 (25%), Positives = 167/389 (42%), Gaps = 31/389 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + +I+L ALK+N + A+ G+ + V+K NAYG G +A L G F Sbjct: 1 MKNTYRACAEINLDALKHNIQEIQAVLGDTKLMCVIKTNAYGHGSIVLARELAAMGAYGF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +V+EG++LR I VL + Q + +++P I + + + + Sbjct: 61 AVATVDEGIELRNNGIIQPILVLGFVAKEQYADMITHHIMPAIFTYSMAKDFDAVANAMH 120 Query: 121 S-HPYALQVDTGFNRLGLSLQE------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + +++DTG +R+G + K ++ I +H ACAD H Sbjct: 121 TVADVHIKLDTGMSRIGFKSDAESIEATVQGIVMINSLLKNIRIDGIFTHFACADCEDDH 180 Query: 174 VNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 + QL+RF +I A+S+ I+ P + R GI +YG Sbjct: 181 MTFKQLKRFDNVIDRLEKNGVHIPIKHCANSAAIIKYPGMRMNMARAGIIIYGLYPSDEV 240 Query: 229 S---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 ++ V+ ++ +I ++ G V YG R + IA +IGY DGYP LS Sbjct: 241 DREVIKLEPVMRLKSHVIYVKTVEPGTTVGYGATYVCQRPTKIATVSIGYGDGYPRALSN 300 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPD---- 340 G+ I PI+G+I MD M D+TD I+ GD + + G Sbjct: 301 -----------KGRVLIGSQSWPIIGRICMDQLMVDVTDADYEIKQGDEVVLVGSQGSES 349 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I +++VA + + NY+ + I R + Y Sbjct: 350 IPVEEVAAINNSFNYEFVCDINRRVPRVY 378 >gi|302205563|gb|ADL09905.1| alanine racemase [Corynebacterium pseudotuberculosis C231] gi|308275798|gb|ADO25697.1| Alanine racemase [Corynebacterium pseudotuberculosis I19] Length = 370 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 157/376 (41%), Gaps = 22/376 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L +IDL A+ +N + + A+ VVK + Y G ++A + G F V Sbjct: 2 NLLEARIDLAAIAHNTRLIKDKAAAQGAQLMCVVKADGYNHGAVEVATVMEENGADQFGV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 ++ EG+ LR ++ I + S+ + + Sbjct: 62 ATIGEGLALREGGIESSILSWIWSPEQDLGAAITAEIDLAAISLEHVKALVRASESYGKK 121 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++VDTG +R G+ Q+ + + + Q++ + SH + AD+ S Q Sbjct: 122 PVRVTVKVDTGLHRSGVDKQDWRESFCMLRDAENIQVTGVFSHFSSADESDSTETEQQER 181 Query: 181 RFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F I + + +A+S L P+ +F + RPG++LYG +SH ++ Sbjct: 182 AFLNAIELGRSLGLELPVNHIANSPATLNRPDLYFDMVRPGLALYGHEPIPGESHGLREA 241 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ R+ +++ GE SYG + +D + V +GYADG P + G Sbjct: 242 MSWVGRVTVVKPIARGEGTSYGLTWRAEQDGYLCVVPVGYADGLPRSAQGHL-------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTT 353 + I G P +G++ MD + + ++ + GD I GP + ++A A GT Sbjct: 294 ---EITIGGRRYPQVGRVCMDQIVVALGENPYGVAQGDEAVILGPTGMTATELATAMGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+L+ R R + + Sbjct: 351 NYELVCRPCGRTVRVF 366 >gi|324324251|gb|ADY19511.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 389 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSGVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPLKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|256390195|ref|YP_003111759.1| alanine racemase [Catenulispora acidiphila DSM 44928] gi|256356421|gb|ACU69918.1| alanine racemase [Catenulispora acidiphila DSM 44928] Length = 397 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 156/389 (40%), Gaps = 36/389 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNAR------TAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +IDL A+++N + + AVVK +AYG G A A G Sbjct: 16 RAEARIDLDAIRSNTRRLGQIVAETGSKSAAGVMAVVKADAYGHGAVPCARAAKQGGAAW 75 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 EE ++LR I G + + + L + C Sbjct: 76 LGTALPEEALQLRAAGLTGPILAWLHPAGGPWDELIVHEIDVTAYAPWVLEEITAAAQRC 135 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVN 175 G+ L+VDTG R G + L+ + + + SH ACAD+P Sbjct: 136 GIQARVQLKVDTGLGRGGTQPHDWLELVELAAKAEAAGHIRVTGVWSHFACADEPGHPSI 195 Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 QL+ F ++ +A+S L P HF L R G+++YG + + Sbjct: 196 RAQLDVFALALAAADHAGLRPEVRHIANSPAALSLPEAHFDLVRAGLAVYGLSPLPDTTP 255 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ +T AR+ L++ A A VSYG + +A+ +GYADG P S + Sbjct: 256 ADFGLRPAMTLTARVALVKNAPAEHGVSYGHIHHTAGPTTLALVPLGYADGLPRNSSNV- 314 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD---SLSIEVGDYIQIFGP----D 340 G+ + G + G++ MD + D+ D + VGD + IFGP + Sbjct: 315 ----------GEVLVGGARHRVAGRMAMDQFVVDLGDPDAVHDVHVGDEVVIFGPGDRGE 364 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 DD A A+GT NY+++ RIG R + Y Sbjct: 365 PTADDWAQATGTLNYEIVTRIGPRVPRVY 393 >gi|229089375|ref|ZP_04220650.1| Alanine racemase [Bacillus cereus Rock3-42] gi|228693956|gb|EEL47644.1| Alanine racemase [Bacillus cereus Rock3-42] Length = 389 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGLSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|183599314|ref|ZP_02960807.1| hypothetical protein PROSTU_02779 [Providencia stuartii ATCC 25827] gi|188021549|gb|EDU59589.1| hypothetical protein PROSTU_02779 [Providencia stuartii ATCC 25827] Length = 356 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 21/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L +N + G+A+ +V+K +AYG + + AL + F + Sbjct: 3 RPISAVIHLQNFTHNLSVVRQHVGHAKIWSVMKADAYGHSIKHVWKALAAS--DGFAILD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR + I +L G + + D + + Sbjct: 61 LNEAILLREQGWKGPILLLEGFFQPDDLKVIDQYQLTTAVHSYWQLDAIENRHFQNPISV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++++G NRLG E H + + +++H A +D S + Sbjct: 121 YVKLNSGMNRLGFEPPEYAQVVHRLSAMENVETVTLMTHFANSD--LSTGTDKPHAIIKQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 I + +A+S L P H+ R G+ LYG + ++ +T ++ Sbjct: 179 FIDGQFPV--CIANSGATLWHPKTHYDWVRSGVILYGASPSGRWQDIADKDLRATMTLQS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II + AGE + YG + IA A GYADGYP G Sbjct: 237 QIIATHEIAAGESIGYGSKFTAPYPMKIATVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++ G P+LG ++MDM D+++ + ++GD ++++G ++ +DDVA A+GT Y+L+ Sbjct: 286 WLNGTRCPLLGTVSMDMLTIDVSECPTAKIGDRVELWGKNLPIDDVAQAAGTIGYELMCA 345 Query: 361 IGTRYAKFY 369 + R Y Sbjct: 346 LAKRVPVVY 354 >gi|238798495|ref|ZP_04641974.1| Alanine racemase 1 [Yersinia mollaretii ATCC 43969] gi|238717657|gb|EEQ09494.1| Alanine racemase 1 [Yersinia mollaretii ATCC 43969] Length = 359 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 169/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G +IA L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLEIAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFSAEDLPILAANRIETAIHSIEQLEALEAADLPAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + A F S + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGIRPEHAEAFYQRLSTCPNVIQPVNIMSHFSRADEPQVETTRQQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G + S+A+S GILL P H RPGI LYG + + + ++ + Sbjct: 182 ATGKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPLDEPYASHFDLLPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ S +VGD + ++G ++ ++ VA +G + Y+L+ ++ Sbjct: 290 NGREVGIVGRVSMDMISVDLGPDASDKVGDEVLLWGAELPVERVAACTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|229194629|ref|ZP_04321426.1| Alanine racemase [Bacillus cereus m1293] gi|228588850|gb|EEK46871.1| Alanine racemase [Bacillus cereus m1293] Length = 389 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKEVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|23100604|ref|NP_694071.1| alanine racemase [Oceanobacillus iheyensis HTE831] gi|50897491|sp|Q8ELR9|ALR1_OCEIH RecName: Full=Alanine racemase 1 gi|22778837|dbj|BAC15105.1| alanine racemase [Oceanobacillus iheyensis HTE831] Length = 376 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 160/383 (41%), Gaps = 26/383 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 S +++ L AL N +R AVVK + YG G IA AG + Sbjct: 4 TSYRDAWVEVSLDALTYNVRQFKNHLQEKSRLMAVVKADGYGHGAVPIARRSLEAGAEYL 63 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119 V ++E +++R A I +L + +L + S L Sbjct: 64 GVAFIDEALQIREAGILAPILLLGFTPSYAVREAVRHDLTLTVYSTETLEAIKDAARSLD 123 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQ 178 ++VD+G +R+GL E + S + ++ I +H A AD D S Q Sbjct: 124 KKAKIHIKVDSGMSRIGLRSSEEVISLMTSLQTEEIEVEGIFTHFADADNDESDAYTYKQ 183 Query: 179 LERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231 E F+ ++ + +S+ + P+ H + R GISLYG + + Sbjct: 184 FETFQGIMEALENEGYSIPIKHCCNSAATIAFPDMHMDMVRVGISLYGLYPGQHLKEILS 243 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q V++ +A+ +LI+ + +SYG + S IA IGYADG+ LS + Sbjct: 244 LQQVMSFKAKPVLIKDVPPHQPISYGLTYETKETSKIATLPIGYADGFSRLLSNV----- 298 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDV 346 G + G PI+G+I MD +M D+++ + D + IFG + I LD V Sbjct: 299 ------GHVTVHGTACPIVGRICMDQSMIDVSEVQTDVTKDDIVTIFGDENAGYIPLDVV 352 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T +Y+ + IG R + Y Sbjct: 353 AEQMQTIHYETVCLIGKRVPRHY 375 >gi|53721740|ref|YP_110725.1| alanine racemase [Burkholderia pseudomallei K96243] gi|126455974|ref|YP_001074998.1| alanine racemase [Burkholderia pseudomallei 1106a] gi|167848949|ref|ZP_02474457.1| alanine racemase [Burkholderia pseudomallei B7210] gi|242313527|ref|ZP_04812544.1| alanine racemase [Burkholderia pseudomallei 1106b] gi|254192792|ref|ZP_04899227.1| alanine racemase [Burkholderia pseudomallei S13] gi|52212154|emb|CAH38171.1| alanine racemase, catabolic [Burkholderia pseudomallei K96243] gi|126229742|gb|ABN93155.1| alanine racemase [Burkholderia pseudomallei 1106a] gi|169649546|gb|EDS82239.1| alanine racemase [Burkholderia pseudomallei S13] gi|242136766|gb|EES23169.1| alanine racemase [Burkholderia pseudomallei 1106b] Length = 374 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQLKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|107028781|ref|YP_625876.1| alanine racemase [Burkholderia cenocepacia AU 1054] gi|116690060|ref|YP_835683.1| alanine racemase [Burkholderia cenocepacia HI2424] gi|105897945|gb|ABF80903.1| alanine racemase [Burkholderia cenocepacia AU 1054] gi|116648149|gb|ABK08790.1| alanine racemase [Burkholderia cenocepacia HI2424] Length = 356 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 150/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G + P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 G SLA+S+ +L P+ HF RPGI LYG + +++ +T + Sbjct: 179 GAESIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKSAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAARVP 352 >gi|317127074|ref|YP_004093356.1| alanine racemase [Bacillus cellulosilyticus DSM 2522] gi|315472022|gb|ADU28625.1| alanine racemase [Bacillus cellulosilyticus DSM 2522] Length = 381 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 162/385 (42%), Gaps = 32/385 (8%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 H +++DL A++ N ++ + A VK N YG +A A AG Sbjct: 6 HFYRNTWVEVDLNAIRENVKNLKNHLPSHVHIMAAVKANGYGHSSVPVAEAALQAGATYL 65 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V ++E ++LR +A I VL + P + + ++ + + +K++ Sbjct: 66 GVALLDEAIELRENGIKAPILVLGYVSPKYVNVAAEYDIRLTVFQSEWVEEAAKVLEADN 125 Query: 121 SHP--YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++DTG RLG+ +E L + + +H A AD+ + + Sbjct: 126 KGKIACHVKIDTGMGRLGIRTKEEGNALIVKLKKYSLFTIEGLFTHYATADELDTSYLEL 185 Query: 178 QLERFRTLISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227 Q +RF+ +IS ++ +S+ L + ++ L R GIS+YG + Sbjct: 186 QQQRFKDMISWFEATWGAEVPMKHCGNSATALRFSSEYYNLVRYGISMYGLSPSEEIKEL 245 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 P++ + + I I+KA G+ +SYG K + I IGYADG+ Sbjct: 246 LPFPLKQAFSLYSEITHIKKAEKGDGISYGATYKSPGEEWIGTIPIGYADGWIRA----- 300 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 G+ + G VPI+G+I MD M + +++G + I G I + Sbjct: 301 -------NATGEVLVNGERVPIVGRICMDQMMVAL--KQPVQIGTKVTIIGKQGNSFITI 351 Query: 344 DDVALASGTTNYDLLVRIGTRYAKF 368 D+VA T NY++ IG+R + Sbjct: 352 DEVANRLNTINYEIPCTIGSRVPRI 376 >gi|256761608|ref|ZP_05502188.1| alanine racemase [Enterococcus faecalis T3] gi|256682859|gb|EEU22554.1| alanine racemase [Enterococcus faecalis T3] Length = 371 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQS 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLSPSYGLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|255026477|ref|ZP_05298463.1| alanine racemase [Listeria monocytogenes FSL J2-003] Length = 368 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 98/378 (25%), Positives = 158/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLEHLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ ++EA + QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DDVA Sbjct: 294 ---HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNAITADDVAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|167827477|ref|ZP_02458948.1| alanine racemase [Burkholderia pseudomallei 9] gi|167914212|ref|ZP_02501303.1| alanine racemase [Burkholderia pseudomallei 112] gi|226195224|ref|ZP_03790815.1| alanine racemase [Burkholderia pseudomallei Pakistan 9] gi|225933029|gb|EEH29025.1| alanine racemase [Burkholderia pseudomallei Pakistan 9] Length = 374 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|307244412|ref|ZP_07526523.1| alanine racemase [Peptostreptococcus stomatis DSM 17678] gi|306492231|gb|EFM64273.1| alanine racemase [Peptostreptococcus stomatis DSM 17678] Length = 387 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 26/376 (6%) Query: 8 RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I+L L+ N+ + + V+K NAYG G +IA G F V + Sbjct: 11 WLEINLDNLEYNFKGIKNKIPEGTKMCMVIKSNAYGHGAVQIARFYEELGADFFAVARLN 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR + I L +P + N+ + + K+ G+ Sbjct: 71 EAMELRDHGITTPILNLGYTNPLTIEDSIRNNVSMTVFDLELAQEIDKVAREIGIKAKIH 130 Query: 126 LQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++DTG +RLG L E D + + L + +H A AD + ++Q Sbjct: 131 LKLDTGMSRLGYVVLDDKLDEIADEIKHISQFEGIILEGMYTHFATADARNKEFENLQTH 190 Query: 181 RFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQT 234 RF ++ K IE S+S +L + + + RPGI YG S+ ++ Sbjct: 191 RFSEMVDKVKAMGVNIEYIHCSNSAEILDCDEKYDMVRPGIIQYGIYPSNEVSYSIDIKP 250 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+T +A++ ++ AG +SYG T I A GYADG+ Sbjct: 251 VMTFKAKVSNVKVLDAGTSISYGRVYFTTVKEKIISIAAGYADGFLRGRRNP-------- 302 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-KLDDVALASGTT 353 +I G I+G+I MD M + + ++V D + IFG D+ +DDVA T Sbjct: 303 ----YVYINGVKCSIVGRICMDQCMVRVPMDMDVKVNDDVVIFGDDLVSVDDVARGCDTI 358 Query: 354 NYDLLVRIGTRYAKFY 369 ++++ + R + Y Sbjct: 359 AHEVMCMMSRRVPRVY 374 >gi|254383132|ref|ZP_04998486.1| alanine racemase [Streptomyces sp. Mg1] gi|194342031|gb|EDX22997.1| alanine racemase [Streptomyces sp. Mg1] Length = 382 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 162/378 (42%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL A++ N ++ + A+ AVVK + YG G A A +AG + +E Sbjct: 13 AEIDLDAVRGNVRALRERAPRAQVMAVVKADGYGHGAVPCARAALDAGAAWIGTATPQEA 72 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 + LR A + G + + + +S++ + + G + L+ Sbjct: 73 LALRAAGIDAPLMCWLWTPGGPWREAVEAGIDVSVSALWALDEVRAAARAAGRTARIQLK 132 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLERFRT 184 DTG R G + + + + + SH ACAD+P +QL FR Sbjct: 133 ADTGLGRAGCQPADWAELVGAAVAAQAEGTVRVTGLWSHFACADEPGHPSVPLQLAAFRD 192 Query: 185 LI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235 ++ + +G+E +A+S L P HF L R G+++YG + P Q Sbjct: 193 MLAYAEKEGVEPEVRHIANSPATLTLPESHFDLVRCGLAVYGVSPAPELGTPAQLGLRPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T +A + L++ AG VSYG D+ +A+ GYADG P SG Sbjct: 253 MTLKASVALVKAVPAGHGVSYGHHHVTAADTRLALIPAGYADGVPRHASGR--------- 303 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + G + + G++ MD + D+ +E GD +FGP + +D A A+ Sbjct: 304 --GPVLVGGKVRTVAGRVAMDQFVVDLGPDDLVEAGDEAVLFGPGDGGEPTAEDWAQAAD 361 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ RIG R + Y Sbjct: 362 TIAYEIVTRIGGRVPRVY 379 >gi|76818834|ref|YP_337437.1| alanine racemase [Burkholderia pseudomallei 1710b] gi|167741914|ref|ZP_02414688.1| alanine racemase [Burkholderia pseudomallei 14] gi|167819093|ref|ZP_02450773.1| alanine racemase [Burkholderia pseudomallei 91] gi|217419246|ref|ZP_03450753.1| alanine racemase [Burkholderia pseudomallei 576] gi|237507771|ref|ZP_04520486.1| alanine racemase [Burkholderia pseudomallei MSHR346] gi|254189746|ref|ZP_04896255.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237] gi|254264373|ref|ZP_04955238.1| alanine racemase [Burkholderia pseudomallei 1710a] gi|254300019|ref|ZP_04967465.1| alanine racemase [Burkholderia pseudomallei 406e] gi|76583307|gb|ABA52781.1| alanine racemase [Burkholderia pseudomallei 1710b] gi|157810371|gb|EDO87541.1| alanine racemase [Burkholderia pseudomallei 406e] gi|157937423|gb|EDO93093.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237] gi|217398550|gb|EEC38565.1| alanine racemase [Burkholderia pseudomallei 576] gi|234999976|gb|EEP49400.1| alanine racemase [Burkholderia pseudomallei MSHR346] gi|254215375|gb|EET04760.1| alanine racemase [Burkholderia pseudomallei 1710a] Length = 374 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|126444859|ref|YP_001062046.1| alanine racemase [Burkholderia pseudomallei 668] gi|167905905|ref|ZP_02493110.1| alanine racemase [Burkholderia pseudomallei NCTC 13177] gi|254183078|ref|ZP_04889670.1| alanine racemase [Burkholderia pseudomallei 1655] gi|126224350|gb|ABN87855.1| alanine racemase [Burkholderia pseudomallei 668] gi|184213611|gb|EDU10654.1| alanine racemase [Burkholderia pseudomallei 1655] Length = 374 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQLKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|322388802|ref|ZP_08062399.1| alanine racemase [Streptococcus infantis ATCC 700779] gi|321140421|gb|EFX35929.1| alanine racemase [Streptococcus infantis ATCC 700779] Length = 367 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 156/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + IDL A++ N M + AVVK NAYG G +A V Sbjct: 1 MKTSPHRPTKALIDLGAIRYNIQQMGEHTPKDALKWAVVKANAYGHGAVAVA-TAIQGDV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR +I +L + + + ++ + + S Sbjct: 60 DGFCVSNIDEALELRQAGITKKILILGVSEVESLSLAKEYAITLTVAGLEWIENLLATES 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L++D+G R+G + + I +H A AD+ S + Sbjct: 120 DLSGLTVHLKIDSGMGRIGFRSTSEAAQAQALLKEHGANVEGIFTHFATADEESDSYFNQ 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QLE F+ +I+ + + ++S+ L F R G S+YG + + + Sbjct: 180 QLECFKEIIAGLQEVPELVHASNSATTLWHAETIFNAVRMGDSMYGLNPSGQVLELPYKL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T E+ I+ ++K AG + YG + + +IA IGYADG+ + Sbjct: 240 KPALTLESAIVHVKKVPAGACMGYGATYQADSEQVIATLPIGYADGWTRDMQNFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G + PI+G+++MD + + G + + G +I DVA+ Sbjct: 295 -------VLVDGQLCPIVGRVSMDQITIRLPKFYPL--GTKVTLIGSDGDKEITATDVAV 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ + R + Y Sbjct: 346 YRGTINYEVVCLLSDRIPREY 366 >gi|47567489|ref|ZP_00238201.1| alanine racemase [Bacillus cereus G9241] gi|228983498|ref|ZP_04143708.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154011|ref|ZP_04282140.1| Alanine racemase [Bacillus cereus ATCC 4342] gi|47555891|gb|EAL14230.1| alanine racemase [Bacillus cereus G9241] gi|228629532|gb|EEK86230.1| Alanine racemase [Bacillus cereus ATCC 4342] gi|228776242|gb|EEM24598.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 389 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|217957812|ref|YP_002336356.1| alanine racemase [Bacillus cereus AH187] gi|222094012|ref|YP_002528063.1| alanine racemase [Bacillus cereus Q1] gi|229137081|ref|ZP_04265705.1| Alanine racemase [Bacillus cereus BDRD-ST26] gi|217063401|gb|ACJ77651.1| alanine racemase [Bacillus cereus AH187] gi|221238061|gb|ACM10771.1| alanine racemase [Bacillus cereus Q1] gi|228646388|gb|EEL02598.1| Alanine racemase [Bacillus cereus BDRD-ST26] Length = 389 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|305665877|ref|YP_003862164.1| alanine racemase [Maribacter sp. HTCC2170] gi|88710652|gb|EAR02884.1| alanine racemase [Maribacter sp. HTCC2170] Length = 380 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 98/377 (25%), Positives = 155/377 (41%), Gaps = 19/377 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M L+IDL L++N++ + L+ + + AVVK AYG KIA L GV Sbjct: 13 MAKASETVLEIDLNNLEHNYNYLRSKLNSDTKFLAVVKAYAYGSDAVKIALKLEAIGVDY 72 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V V EGV LR+ + I VL+ +K+I + S F G Sbjct: 73 FAVAYVNEGVALRMGGVKKSILVLHPQSVNFDKLIEHCLEPSLYSPKILREFLEATKRNG 132 Query: 120 -VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSV 177 +P ++ +TG NRLG + ++ +++ I SHLA D Sbjct: 133 QKDYPVHIKFNTGLNRLGFWENDVDYIMDQLKERRDIRITSIFSHLAATEDSTEKQFTLK 192 Query: 178 QLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q++ F ++S + + ++SGI+ P +F + R GI LYG + + Sbjct: 193 QIDTFTKIVSDFEEKLGYSPLKHILNTSGIINYPEANFDMVRSGIGLYGFANDEEIDSQL 252 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + T + I I K E V Y + A +G+ADG Sbjct: 253 KPIATLKTIISQIHKIEPNESVGYNRAYTSEGYRVTATLPLGHADGIGRQYG-------- 304 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 + G + PI+G + MDM M DIT + GD + IFG + A + T Sbjct: 305 --KGKTFVSVNGTLAPIIGNVCMDMIMVDITGI-DCKEGDEVIIFGGNPTAHSFAATANT 361 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y+L+ I R + + Sbjct: 362 ISYELITGISQRIKRVF 378 >gi|256617722|ref|ZP_05474568.1| alanine racemase [Enterococcus faecalis ATCC 4200] gi|257089263|ref|ZP_05583624.1| alanine racemase [Enterococcus faecalis CH188] gi|312904409|ref|ZP_07763569.1| alanine racemase [Enterococcus faecalis TX0635] gi|256597249|gb|EEU16425.1| alanine racemase [Enterococcus faecalis ATCC 4200] gi|256998075|gb|EEU84595.1| alanine racemase [Enterococcus faecalis CH188] gi|310632236|gb|EFQ15519.1| alanine racemase [Enterococcus faecalis TX0635] gi|315577240|gb|EFU89431.1| alanine racemase [Enterococcus faecalis TX0630] Length = 371 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 VLRLTSELIHVKRLAAGEGIGYGETYVTESEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|163840445|ref|YP_001624850.1| alanine racemase [Renibacterium salmoninarum ATCC 33209] gi|162953921|gb|ABY23436.1| alanine racemase [Renibacterium salmoninarum ATCC 33209] Length = 393 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 159/392 (40%), Gaps = 35/392 (8%) Query: 1 MHSNEFL---RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ +F + IDL A++ N + +S A+ AVVK + YG G +A A AG Sbjct: 1 MNRADFPVERQAVIDLEAIRQNVRRIADISSPAKVMAVVKADGYGHGAVPVAKAALEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 V E + LR A + + + +S + Sbjct: 61 SWIGTAHVNEALALREAGIDAPLLAWLHTPATDFAAAVEAGIDLGVSGWELEYIVAAARE 120 Query: 118 CGVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L++DTG R G + + + ++ L ++ + SHLA AD+P+ Sbjct: 121 QQRPARVHLKIDTGLGRNGSTSSLWESLIGEALEHQDEGLLRVVGLFSHLAVADEPNRAE 180 Query: 175 NSVQLERFRT--LISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-- 227 QL RFR I+ G++ LA++ I P+ HF L R G+ +YG + Sbjct: 181 TDDQLARFREAVAIAEDSGVDVEVRHLANTPAIFSRPDTHFDLVRAGVGIYGLSPFAGQT 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + + +T + + + A + VSYG + S + + +GY DG P Sbjct: 241 SEELGLTPAMTLKTLVAHCKDVPADQGVSYGLNYRTAAPSTLGLIPMGYGDGVPR----- 295 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE-----VGDYIQIFGP-- 339 V GG I + ++G+I MD + D+ + + +G +FG Sbjct: 296 -------VATGGPVRIGDQVYSVVGRIAMDQMVVDLGPNSKMADGCSLLGHEAVLFGAAA 348 Query: 340 --DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D +D A A+GT NY++++RI R + Y Sbjct: 349 VGDPSVDLWAAAAGTINYEVVIRIAPRVPRIY 380 >gi|134279387|ref|ZP_01766100.1| alanine racemase [Burkholderia pseudomallei 305] gi|134249806|gb|EBA49887.1| alanine racemase [Burkholderia pseudomallei 305] Length = 374 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I + A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGIVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|56477426|ref|YP_159015.1| alanine racemase [Aromatoleum aromaticum EbN1] gi|81821118|sp|Q5P3K0|ALR_AZOSE RecName: Full=Alanine racemase gi|56313469|emb|CAI08114.1| Alanine racemase [Aromatoleum aromaticum EbN1] Length = 353 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 167/367 (45%), Gaps = 17/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+H + G R AVVK NAYG G + A F V Sbjct: 2 RPARALIDLDALRHNYHLARSRHGG-RALAVVKANAYGHGAAQ-CARALAADADGFAVGF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR I +L G+ P + + +L V+ QL + Sbjct: 60 LEEALELRAAGIDQPILLLEGVFAPAELDEVVRHDLWIVVHHAEQLRIIDHARPA-LPLE 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NR G E + +++H A AD+P + QL F Sbjct: 119 VWLKMNSGMNRAGFLSHELRPAWQRLKDSGKVGGITLMTHFARADEPQVLATTEQLTAFD 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 T G SLA+S IL P H RPGI LYG ++ + ++ V+T E+ +I Sbjct: 179 TATRELPG-PRSLANSGAILGWPAAHRDWARPGILLYGADPMPDEPNGLRPVMTLESAVI 237 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R+ AG + YG + R + + A+GYADGYP ++ G + Sbjct: 238 AVREIPAGAPLGYGARFHAERATRAGLVALGYADGYPRSVPN-----------GTPVAVD 286 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G ++G+++MD+ D+TD +G ++++G +I ++ +A A+ T +Y+LL + Sbjct: 287 GLRTRLIGRVSMDLLTIDLTDLPDAGLGSRVELWGANIPVNRIAQAAKTISYELLCNV-K 345 Query: 364 RYAKFYT 370 R Y+ Sbjct: 346 RVRFEYS 352 >gi|110632757|ref|YP_672965.1| alanine racemase [Mesorhizobium sp. BNC1] gi|110283741|gb|ABG61800.1| alanine racemase [Chelativorans sp. BNC1] Length = 385 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 195/364 (53%), Gaps = 16/364 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + + A AAVVK +AYGLG ++A AL +AG + FFV +EEG Sbjct: 11 LTVDLEAVTANWLLLAGRAAGAECAAVVKADAYGLGAAEVATALQDAGCRTFFVAHLEEG 70 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126 + LR +RIFVL G P ++ L PV+ ++ +L + K + P AL Sbjct: 71 LSLRRTLGSGSRIFVLNGTPPDTQEEFGQAALTPVVGTINELQAWRKHAATKRGPIPVAL 130 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +RLGLS + ++ + + L++SHLACAD+P N Q RF+ L Sbjct: 131 QLDTGMSRLGLSPSDVSGIAADTTLLRGIHIELVMSHLACADEPGHSANESQRSRFQRLR 190 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 AS+A+SSG LG +HF + RPG +LYG + +PM VV AR++ +R Sbjct: 191 RMLPQAPASIANSSGTFLGKGFHFSMIRPGAALYGINPTPYQPNPMCQVVKVAARVLQVR 250 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 +A AG + YG + R S++A A+GYADG+P S G + +G Sbjct: 251 QARAGTGIGYGHAARARRLSMLATIALGYADGWPCQAS-------------GAAYYRGQR 297 Query: 307 VPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +P +G+++MD + D+T GD ++ P +D++ +G+ Y++L R+G R+ Sbjct: 298 LPFIGRVSMDSIILDVTGCSNPPREGDLVEFICPSQTVDEIGRLAGSIGYEVLTRLGRRF 357 Query: 366 AKFY 369 + Y Sbjct: 358 HRRY 361 >gi|212550479|ref|YP_002308796.1| alanine racemase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548717|dbj|BAG83385.1| alanine racemase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 383 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 175/383 (45%), Gaps = 27/383 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +++ L+++L A+ +N++ +L + + +VK N YG+G +++ L N G V Sbjct: 8 DDYTILEVNLKAIIDNFNYFRSLLKRDTKIICMVKANGYGIGSYELSKTLQNNGADILAV 67 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 +EGV LR I V+ + + ++ + ++ T + Sbjct: 68 ALADEGVYLRKKGIHLPILVMNTEKYSLNKIFQYNLHPCIYNQNILDATIVETKKQDILH 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLE 180 +P L++DTG +R G + +E D N+ + I SHLA AD + + Q++ Sbjct: 128 YPIHLKIDTGMHRFGFNPEEIPDVAKILKNQNNVFVQSIFSHLAATADPFLDYFTNQQIK 187 Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-------NK 228 F L + + + + +S+GI P+ F + R GI LYG + ++ Sbjct: 188 LFIYLSKQLEQLLGYQCQRHILNSAGIERFPDAQFDMVRLGIGLYGISVCTFSHTMGKDR 247 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ V + RI+ IR+ GE V Y L RDS +A +GYADG L Sbjct: 248 PYGVKPVAVLKTRILQIREIKKGETVGYNRNGILDRDSFVACLPVGYADGLNRHLGNRCC 307 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDV 346 + FI G++ PI+G I MD + DITD + ++ GD ++IFG I ++ + Sbjct: 308 ----------QVFIGGHLCPIIGNICMDSCIIDITDITNKKIVEGDEVEIFGKHITINFL 357 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T Y++L I R + Y Sbjct: 358 AKKLQTIPYEILTSISQRVKRVY 380 >gi|142467|gb|AAA22220.1| alanine racemase (EC 5.1.1.1) [Geobacillus stearothermophilus] Length = 386 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 150/378 (39%), Gaps = 28/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++DL A+ +N ++ L + AVVK NAYG G ++A G V Sbjct: 5 HRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALERGPPP-AV 63 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR +A I VL P + + + L S L S Sbjct: 64 AFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPI 123 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 + L++DTG RLG+ +E L + +H A AD+ ++ S Q R Sbjct: 124 HFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTR 183 Query: 182 FRTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F ++ A+S+ L P+ F + R GI++YG +P++ Sbjct: 184 FLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEA 243 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +R++ ++K GE VSYG + I IGYADG Sbjct: 244 FSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGVRR-------------L 290 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G+I MD M + L + G + + G I +DDVA Sbjct: 291 QHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPV--GTKVTLIGRQGDEVISIDDVARHLE 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 349 TINYEVPCTISYRVPRIF 366 >gi|182679264|ref|YP_001833410.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635147|gb|ACB95921.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039] Length = 379 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 193/371 (52%), Gaps = 16/371 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL A+ NW ++ A+ G A AVVK +AYG+G E + L AG + +FV V Sbjct: 16 ATLSVDLAAIVRNWRTLQAVCGEAECGAVVKADAYGVGLEPVVRELSAAGCKTYFVAHVF 75 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-------G 119 EG + R A I+VL G+ PG + L PV+ S+P++ + + + G Sbjct: 76 EGRRARAIDASAIIYVLNGLVPGTAPAYLEHGLRPVLCSLPEIEEWLQFCALFGRRSAEG 135 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + P ALQ+DTG NRLGL L + + + + LI+S + + Q+ Sbjct: 136 ETLPAALQLDTGLNRLGLRLDQIERAADLTESLNI---KLILSQFIWSGQSNLARCETQV 192 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 F ++ +K + AS+A+S+GI L + L RPG +LYGG + +PMQ V+ E Sbjct: 193 SLFESMRQPWKQVPASIANSAGIFLERTPLYDLVRPGYALYGGNPAPGRPNPMQGVLRLE 252 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ARI+ + GE V Y G+ +A +IGYADG P + G V GG+ Sbjct: 253 ARILQVNHVEQGETVGYDGRYLAKSPRRLATISIGYADGIPRSALGS------EVHPGGE 306 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +KG P +G+++MD+T+ DIT + GD +++ G I +D++A S T Y++L Sbjct: 307 VVVKGVRCPFVGRVSMDLTVVDITLAPEAMRGDTVELIGKAISIDELATRSRTIGYEILT 366 Query: 360 RIGTRYAKFYT 370 +G+R+ + YT Sbjct: 367 NLGSRFYRRYT 377 >gi|229542538|ref|ZP_04431598.1| alanine racemase [Bacillus coagulans 36D1] gi|229326958|gb|EEN92633.1| alanine racemase [Bacillus coagulans 36D1] Length = 383 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 159/381 (41%), Gaps = 27/381 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M +++DL A+ N +M L + + AVVK NAYG G E +A +G Sbjct: 1 MAFYRDTWVEVDLDAISENVGNMRQLLPEHTQIIAVVKANAYGHGAEYVAKTALASGASA 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V ++E + LR A I VL P + + N+ + L + + G Sbjct: 61 LAVAFLDEALALRKKGITAPILVLGAARPEDAGVAAEENISLTVFQKDWLEEAGRYL-TG 119 Query: 120 VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G+ QE + + I +H A AD+ + + Q Sbjct: 120 RKLSVHLKCDTGMGRIGVRTLQELKEVEKIVNQQSCFYFEGIFTHFATADEIDTTLYEKQ 179 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 +F+ ++ + + + +S+ L F R GI++YG + P+ Sbjct: 180 YSQFQDMVLNLEHRPPYVHCANSAAALRFDQSPFNAVRFGIAMYGLSPSPAIKPVLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + ++ +++ AG+ VSYG + + D IA IGYADG+ LSG Sbjct: 240 KEAFSLHTKVTHVKQIHAGDTVSYGATYQASGDEWIATLPIGYADGWIRRLSGQ------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I G PI+G+I MD M + + + VG + G I +D++A Sbjct: 294 ------EVIIDGERAPIVGRICMDQCMVKL--ARPVAVGTKATLIGKQGDLSIPVDEIAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++ I +R + + Sbjct: 346 KLETINYEVTCSISSRVPRIF 366 >gi|309388300|gb|ADO76180.1| alanine racemase [Halanaerobium praevalens DSM 2228] Length = 377 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 24/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I + AL N+ + L+ + AAVVK +AYG G KIA L G + V Sbjct: 7 RPAWLEIKMKALAKNYKFIRSKLNKKTKIAAVVKADAYGHGAVKIAKKLVCLGTEYLCVG 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSH 122 S EEG++LR + I VL + P Q + I +LI +S Sbjct: 67 SPEEGIELRNAGLEVPILVLAEVLPAQYQSILAGDLIQTAASRETLFALNKFAAKNNKKI 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ DTG R+G +E + + + +L I SHLA AD+ ++ QL RF Sbjct: 127 KIHLKCDTGMGRIGFLPEELFEVYKLALSLDNLKLEGIFSHLARADETEKEFSNKQLARF 186 Query: 183 RTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235 ++ K +A+S+ ++ + L RPGI LYG ++ + ++ + Sbjct: 187 DCALNKIKKSNFKLPLIHIANSAAVIDLKATYLDLVRPGIILYGLLPSAELKEESFLEPI 246 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + +I+ +R+ +SYG K +AV IGY DGYP LS Sbjct: 247 LEFKTKIVQLRELPPASTISYGSTYKTEASEKLAVLPIGYKDGYPRLLSNQ--------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G+ I+G PI GK+ M T+ + + + +GD + + G +I ++A + Sbjct: 298 --GEVLIRGQRAPIRGKVCMGQTIVSVEEIENAAIGDEVVLIGKQGTAEITAAEIAKLAS 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+++ + K Y Sbjct: 356 TISYEIVCNLDRNLKKIY 373 >gi|229161081|ref|ZP_04289069.1| Alanine racemase [Bacillus cereus R309803] gi|228622440|gb|EEK79278.1| Alanine racemase [Bacillus cereus R309803] Length = 408 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 165/376 (43%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++ID+ A+K+N N + A VK N YG G ++A + AGV V V+ Sbjct: 28 VEIDVNAVKHNVKEFKKHVNNEQIAMMAAVKANGYGHGAVEVAKSAIEAGVNQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E ++LR I +L + +++ + + L +++ Sbjct: 88 EAIELREAGITVPILILGYTSVAAAEYAIQYDVMMTVYRIEDLQGINEIAQHLQKKAHIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ I +H + AD+ ++Q F Sbjct: 148 IKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K + + ++S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTAKELGIHISYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D+T ++ ++VGD + +G I ++++A GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDEVVFYGKQGEEEIAVEEIADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM 22836] Length = 823 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 165/369 (44%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL A+ +N++ L+ + +VK + YG G ++A L V EE Sbjct: 465 LDIDLDAIVHNYNFYRSRLNPKTKMVCMVKADGYGTGATEVAKTLQYHKCDYLAVAVAEE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 GV LR + I VL G E++ V + F + G++ +P + Sbjct: 525 GVFLRKQGIKVPIIVLNSEVGGFEELAMYALEPEVYNFRILDAFIKEAKLQGITNYPIHI 584 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG + ++ + ++ ++ + SHLA ++ + Q++ F+ + Sbjct: 585 KIDTGMHRLGFTEEDIPELMERIKSQTGVRIQSVFSHLAASESWNFDNFTVDQIKTFKKI 644 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + + +S+GI PN + R GISLYG + T + Sbjct: 645 TKEIEKNCHYQVMKHILNSAGIERFPNEQMDMVRLGISLYGVSASGLNGLRNVC--TLKT 702 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AGE V YG + +D+ IA IGYADG GK Sbjct: 703 TILQIKDIKAGETVGYGRKGHFDKDATIATIRIGYADGLSRQFGNGV----------GKV 752 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G+MVPI+G I MD++M D+T ++ GD + IFG + + D+A T Y++L Sbjct: 753 LVNGHMVPIVGNICMDLSMIDVTGI-EVKEGDSVVIFGENPSVVDLAKEINTIPYEVLTS 811 Query: 361 IGTRYAKFY 369 I +R Y Sbjct: 812 ISSRVKHIY 820 >gi|166031784|ref|ZP_02234613.1| hypothetical protein DORFOR_01485 [Dorea formicigenerans ATCC 27755] gi|166028237|gb|EDR46994.1| hypothetical protein DORFOR_01485 [Dorea formicigenerans ATCC 27755] Length = 389 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 169/385 (43%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + ++DL A+ N+ M A + + AV+K + YG G +IA L + Sbjct: 1 MKQYSRVCERVDLDAIFYNFQMMKANIKDGVQMIAVIKTDGYGHGAVQIARLLEPVDYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + V +++E V LR + I VL I P Q + + + + +V S L Sbjct: 61 GYAVATLDEAVVLRKNEIKKPILVLGCIFPDQWEAMIENEVRMTTYTVEMAKGVSNLAVK 120 Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +++DTG +RLG ++++D +L + +H A AD+ Sbjct: 121 MGKDAYIHIKLDTGMSRLGFQIHEDSVDAIEEISKMPGLKLEGMFTHFAKADETDKAYTD 180 Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 VQ+ ++ + K ++S+GI+ + L R GIS+YG K Sbjct: 181 VQIGKYNYMRDELKKRGVTFPIYHCSNSAGIIDIKKANMDLVRAGISIYGLYPSEEVEKK 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + P++ + + + ++ G VSYGG +++ +A +GY DGYP +LS Sbjct: 241 NVPLRPAMELISHVSYVKTVPEGTPVSYGGTYVTEKETSLATIPVGYGDGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PI G++ MD M D+TD ++ GD + + G D + ++ Sbjct: 298 --------KGYVLIHGKKAPIRGRVCMDQFMVDVTDIPDVKFGDKVTLVGKDGDEFLPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ + +G R + Y Sbjct: 350 TLSDLSGRFNYEFVCDLGKRIPREY 374 >gi|83816434|ref|YP_444716.1| alanine racemase [Salinibacter ruber DSM 13855] gi|83757828|gb|ABC45941.1| alanine racemase [Salinibacter ruber DSM 13855] Length = 450 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 164/377 (43%), Gaps = 25/377 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 + +DL A+++N + +G A A++K +AYG G +A A Y AG++ + V + Sbjct: 58 PVTATVDLAAIRHNAGVLQERAGGADVMAIIKADAYGHGVRPVAQAAYEAGIRHYGVARL 117 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR RI VL P Q + +L +SS + S Sbjct: 118 PEGVHLREAGHGGRILVLGAPAPTQLPRYAEYDLDLTVSSADVAAAVVRHASPEAPLRVH 177 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + VDTG RLGL+ + + +L+ + +H A AD P S QL+RFR + Sbjct: 178 VTVDTGMGRLGLAPDDVPAVMTRLADASGVRLAGLWTHFATADAPGSSFAQTQLDRFRAV 237 Query: 186 ISHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237 + + +++ L + L R GI+LYG T +++ ++ + Sbjct: 238 VGAVDVDVEHVHAANTGGLLTIGAPTHEFDASLVRSGIALYGLAATPELSARLDLRPAMR 297 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 AR+ ++ AG +SYG Q + R + IA IGY DGYP SG S Sbjct: 298 LAARVTHLKTVPAGTPISYGAQWEAPRRTRIATLGIGYGDGYPRRCSGRAS--------- 348 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS-----IEVGDYIQIFGP-DIKLDDVALASG 351 I G PI+G I MDM M D+ ++ GD +FGP DVA S Sbjct: 349 --VRIGGASCPIVGTICMDMCMVDLGPPNEAPATRVDRGDEAVLFGPAGPTAYDVAQWSD 406 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y++L + R + Sbjct: 407 TIPYEILCGVSPRVPRR 423 >gi|255323995|ref|ZP_05365121.1| alanine racemase [Corynebacterium tuberculostearicum SK141] gi|255299175|gb|EET78466.1| alanine racemase [Corynebacterium tuberculostearicum SK141] Length = 368 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 22/372 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ IDL+A+ +N + + VVK +AYG G K+ P + AG F V + Sbjct: 4 MLKTTIDLSAIAHNVRLIKEKVGPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVAT 63 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR A I + + ++S+ Q + Sbjct: 64 LREAVNLRRAGVDAPIVAWIWQTDEILEEALANGIEVAVNSLEQAHKL---VKADFPAEV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V+TG +R G+ + + + ++ ++SH ACAD+P + N Q E FRT Sbjct: 121 YVKVETGMHRSGVDEGDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPHNDAQEEAFRT 180 Query: 185 --LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 ++ G+E LA+S +L P+ +F+ R G + YG + H ++ +T Sbjct: 181 ALQLAREIGLECPVNHLANSPAVLTRPSSYFEQVRVGAACYGLEPIEGREHGLRPAMTWS 240 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +I ++ AGE YG K + +A GYADG P G Sbjct: 241 GQIFNVKPIQAGEGTCYGLTWKADKPGFLATVDCGYADGLPRGYQGDL-----------H 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357 I G++ P +G+I MD + D+ ++ ++ G IFG + D+A A+GT NY++ Sbjct: 290 VGIGGHLYPQVGRICMDQIVVDLGENPHGVDTGQDAVIFGNGGVSATDLAAAAGTINYEV 349 Query: 358 LVRIGTRYAKFY 369 + R + Y Sbjct: 350 VCLPDGRTEREY 361 >gi|296332832|ref|ZP_06875292.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673178|ref|YP_003864850.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150112|gb|EFG91001.1| alanine racemase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411422|gb|ADM36541.1| alanine racemase [Bacillus subtilis subsp. spizizenii str. W23] Length = 389 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 103/384 (26%), Positives = 166/384 (43%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R +IDL+A+K N +M G + AVVK NAYG G + A A +AG Sbjct: 1 MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR +A I VL + P +I + +L SV L ++ M Sbjct: 61 ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYAEIAAEYDLTLTGYSVEWLQEAARHM 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175 G S + L+VDTG NRLG+ +E + ++ + + +H A AD+ Sbjct: 121 KKG-SLHFHLKVDTGMNRLGVKTEEEVHHVMAILDRNPRLKCKGVFTHFATADEKERGYF 179 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK----INKS 229 +Q ERF+ LI+ + + +S+ L F R GI +YG Sbjct: 180 LMQFERFKELIAPLPLKKMMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADITDEIP 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + T + + ++ GE VSYG + +D+ I +GYADG+ L Sbjct: 240 FELHPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLK----- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G + +KG + I G+I MD M ++ G + + G I +D+ Sbjct: 295 -------GTEILVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + + Sbjct: 346 IAGRLETINYEVSCTISSRVPRMF 369 >gi|126728695|ref|ZP_01744510.1| alanine racemase [Sagittula stellata E-37] gi|126710625|gb|EBA09676.1| alanine racemase [Sagittula stellata E-37] Length = 345 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 26/366 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL IDL AL+ NW ++ ALS T AVVK +AYGLG EK AP L AG + FFV Sbjct: 3 MARLTIDLGALRANWTALAALSEG-ETGAVVKADAYGLGAEKCAPVLAAAGARTFFVAIA 61 Query: 66 EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EEG++LR P I V G PG I D +L+P+I+S+ Q+ + + + HP+ Sbjct: 62 EEGLRLRRILGPGPEICVFSGHMPGDRDAIRDADLVPMINSIDQMLMHVEGL---PGHPF 118 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +Q+D+G NRLG+ E + + L++SHLACAD+P +N+ QL FR Sbjct: 119 GIQLDSGMNRLGMEPAEWSALRDIALAQ---NPRLVMSHLACADEPDHAMNARQLAAFRD 175 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + SL ++ G LLGP YHF +TRPG+ LYGG ++ Q VV+ + +I Sbjct: 176 MTDGIDA-PRSLGATGGTLLGPEYHFDMTRPGVGLYGGLPFVDA----QPVVSLDIPVIQ 230 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R L GE V YG + S +A A GYADG + + Sbjct: 231 TRDVLPGETVGYGNTWTASAPSRVATIAGGYADGIHRAMG-----------SAAYVWAGE 279 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ILG+I+MD+ D+T + D++++ G +D +A +GT Y++L +G R Sbjct: 280 TRCKILGRISMDLIAVDVTGLPELP--DHVELIGLHQGVDTLADWAGTIGYEVLTSLGAR 337 Query: 365 YAKFYT 370 Y + YT Sbjct: 338 YDRSYT 343 >gi|229074289|ref|ZP_04207333.1| Alanine racemase [Bacillus cereus Rock4-18] gi|228708841|gb|EEL60970.1| Alanine racemase [Bacillus cereus Rock4-18] Length = 389 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEASFYRDTWVEVDLDAIYNNIKHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVDGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|315148009|gb|EFT92025.1| alanine racemase [Enterococcus faecalis TX4244] Length = 371 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQS 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYGLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|313201238|ref|YP_004039896.1| alanine racemase [Methylovorus sp. MP688] gi|312440554|gb|ADQ84660.1| alanine racemase [Methylovorus sp. MP688] Length = 356 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 101/365 (27%), Positives = 163/365 (44%), Gaps = 21/365 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L AL++N + + +ART AVVK N YG G +A L F V Sbjct: 2 RPITATIHLAALQHNLRRVRDYAPHARTMAVVKANGYGHGLLNVARGLAE--ADGFAVLR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR + + +L G+ + D + V+ + Q+ + S V Sbjct: 60 LQEALELRAAGYRQTLLLLEGVFESAELNAAADAGVSIVVHAEHQIAMLEQ-ASLPVPIA 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++++TG NRLG Q +++H A AD+ ++Q RF Sbjct: 119 VFVKMNTGMNRLGFVPQAFASAVARLAACPQVSSITLMTHFATADEAPGIATALQ--RFE 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240 + + SLA+S+ IL P H RPGI LYG T +Q V+ ++ Sbjct: 177 AGAAGMQ-YPKSLANSAAILRHPESHADWVRPGIMLYGATPVQSVTAAHFGLQAVMHLQS 235 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ GE + YG R++ + + A GYADGYP G G Sbjct: 236 ELIALQTLPPGESLGYGATFVAERETRVGIVACGYADGYPRHAPG-----------GTPI 284 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + LG+++MDM DITD ++G ++++G I +D VA A GT Y+LL Sbjct: 285 AVAGQVSKTLGRVSMDMLFVDITDIPGADIGSPVELWGATIPVDAVAEACGTVGYELLCA 344 Query: 361 IGTRY 365 + +R Sbjct: 345 VTSRV 349 >gi|289164180|ref|YP_003454318.1| alanine racemase 1, PLP-binding, biosynthetic [Legionella longbeachae NSW150] gi|288857353|emb|CBJ11181.1| alanine racemase 1, PLP-binding, biosynthetic [Legionella longbeachae NSW150] Length = 359 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 166/366 (45%), Gaps = 17/366 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+ +AL +N + + + A+VK NAYG G +AP L V F V Sbjct: 2 SRPTRLVIEPSALLHNLEQIKRFAPGKKIIAMVKANAYGCGVHIVAPVL-EGHVDAFGVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + L + + G+ E I + + P + Sbjct: 61 CIEEALILHKIGSRTPCILFQGVFSPDEFKIVAQHQFGCVIHQPHQLQWLLNTPLNTPIK 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++V+TG +RLG QE + + + +++HLACAD+P N Q+ F Sbjct: 121 LWVKVNTGMHRLGFKPQELHEVMSALQTCTWVDKDIGLMTHLACADEPERIENYQQISLF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAE 239 IS + S+A+S+ I+ P H + RPGI LYG + N+ + V+ Sbjct: 181 EN-ISITGFSQRSIANSAAIISFPQTHADVVRPGIMLYGVSPFANQTSIELGLLPVMRFV 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I + V Y G K + S+I + A GY DGYP + Sbjct: 240 SAISAVHHNPPFAPVGYSGIWKSEKHSVIGIVAAGYGDGYPRHI-----------AENTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +++G VPI+G+++MDM D+T+ ++ G ++++G +I ++ VA A+GT+ Y+LL Sbjct: 289 VWVQGKEVPIVGRVSMDMLAVDLTEHQEVKPGAPVELWGKNILVERVAKAAGTSGYELLC 348 Query: 360 RIGTRY 365 +I R Sbjct: 349 QISERV 354 >gi|229172800|ref|ZP_04300355.1| Alanine racemase [Bacillus cereus MM3] gi|228610688|gb|EEK67955.1| Alanine racemase [Bacillus cereus MM3] Length = 408 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 158/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A G+ V V+ Sbjct: 28 IEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEVGIDQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYA 125 E ++LR I +L + +++ + S Sbjct: 88 EAIELREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRLQKKAQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ K + + +S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNAAKELGIHIPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHAVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ I+ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHIKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D++ ++ ++VGD + +G I +++VA GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDVSKAMPVQVGDEVVFYGKQGEEEIAVEEVADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|30260428|ref|NP_842805.1| alanine racemase [Bacillus anthracis str. Ames] gi|47525509|ref|YP_016858.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183271|ref|YP_026523.1| alanine racemase [Bacillus anthracis str. Sterne] gi|65317680|ref|ZP_00390639.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012] gi|165871589|ref|ZP_02216235.1| alanine racemase [Bacillus anthracis str. A0488] gi|167634186|ref|ZP_02392508.1| alanine racemase [Bacillus anthracis str. A0442] gi|167640352|ref|ZP_02398617.1| alanine racemase [Bacillus anthracis str. A0193] gi|170687737|ref|ZP_02878952.1| alanine racemase [Bacillus anthracis str. A0465] gi|170707904|ref|ZP_02898354.1| alanine racemase [Bacillus anthracis str. A0389] gi|177653374|ref|ZP_02935584.1| alanine racemase [Bacillus anthracis str. A0174] gi|190567419|ref|ZP_03020333.1| alanine racemase [Bacillus anthracis Tsiankovskii-I] gi|227812920|ref|YP_002812929.1| alanine racemase [Bacillus anthracis str. CDC 684] gi|229599992|ref|YP_002864879.1| alanine racemase [Bacillus anthracis str. A0248] gi|254686594|ref|ZP_05150453.1| alanine racemase [Bacillus anthracis str. CNEVA-9066] gi|254723566|ref|ZP_05185353.1| alanine racemase [Bacillus anthracis str. A1055] gi|254734928|ref|ZP_05192640.1| alanine racemase [Bacillus anthracis str. Western North America USA6153] gi|254739713|ref|ZP_05197406.1| alanine racemase [Bacillus anthracis str. Kruger B] gi|254754916|ref|ZP_05206951.1| alanine racemase [Bacillus anthracis str. Vollum] gi|254756959|ref|ZP_05208987.1| alanine racemase [Bacillus anthracis str. Australia 94] gi|30253749|gb|AAP24291.1| alanine racemase, spore-specific [Bacillus anthracis str. Ames] gi|47500657|gb|AAT29333.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177198|gb|AAT52574.1| alanine racemase [Bacillus anthracis str. Sterne] gi|164712693|gb|EDR18224.1| alanine racemase [Bacillus anthracis str. A0488] gi|167511754|gb|EDR87135.1| alanine racemase [Bacillus anthracis str. A0193] gi|167530500|gb|EDR93215.1| alanine racemase [Bacillus anthracis str. A0442] gi|170127262|gb|EDS96139.1| alanine racemase [Bacillus anthracis str. A0389] gi|170668264|gb|EDT19012.1| alanine racemase [Bacillus anthracis str. A0465] gi|172081414|gb|EDT66487.1| alanine racemase [Bacillus anthracis str. A0174] gi|190561546|gb|EDV15517.1| alanine racemase [Bacillus anthracis Tsiankovskii-I] gi|227006546|gb|ACP16289.1| alanine racemase [Bacillus anthracis str. CDC 684] gi|229264400|gb|ACQ46037.1| alanine racemase [Bacillus anthracis str. A0248] Length = 389 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKIALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|150004319|ref|YP_001299063.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides vulgatus ATCC 8482] gi|149932743|gb|ABR39441.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides vulgatus ATCC 8482] Length = 821 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 150/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG N+ + V T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQ--IIHNVSTLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDKTIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|294506479|ref|YP_003570537.1| Alanine racemase [Salinibacter ruber M8] gi|294342806|emb|CBH23584.1| Alanine racemase [Salinibacter ruber M8] Length = 465 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 163/377 (43%), Gaps = 25/377 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 + +DL A+++N + +G A A++K +AYG G +A A Y AG++ + V + Sbjct: 68 PVTATVDLAAIQHNAGVLQERAGGADVMAIIKADAYGHGVRPVARAAYEAGIRHYGVARL 127 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR RI VL P Q + +L + S + S Sbjct: 128 PEGVHLREAGHGGRILVLGAPAPTQLPRYAEYDLDLTVPSADIAAAVVRHASPEAPLRVH 187 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + VDTG RLGL+ + + +L+ + +H A AD P S QL+RFR + Sbjct: 188 VTVDTGMGRLGLAPDDVPAVMTRLADAPGVRLAGLWTHFATADAPGSSFAQTQLDRFRAV 247 Query: 186 ISHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYG--GTDKINKSHPMQTVVT 237 + + +++ L + L R GI+LYG T +++ ++ + Sbjct: 248 VDAVDVDVEHVHAANTGGLLTIGAPTHEFDASLVRSGIALYGLAATPELSARLDLRPAMR 307 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 AR+ ++ AG +SYG Q + R + IA IGY DGYP SG S Sbjct: 308 LAARVTHLKTVPAGTPISYGAQWEAPRRTRIATLGIGYGDGYPRRCSGRAS--------- 358 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS-----IEVGDYIQIFGP-DIKLDDVALASG 351 I G PI+G I MDM M D+ ++ GD +FGP DVA S Sbjct: 359 --VRIGGASCPIVGTICMDMCMVDLGPPNEAPATRVDRGDEAVLFGPAGPTAYDVAQWSD 416 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y++L + R + Sbjct: 417 TIPYEILCGVSPRVPRR 433 >gi|256964328|ref|ZP_05568499.1| alanine racemase [Enterococcus faecalis HIP11704] gi|307271848|ref|ZP_07553116.1| alanine racemase [Enterococcus faecalis TX0855] gi|256954824|gb|EEU71456.1| alanine racemase [Enterococcus faecalis HIP11704] gi|306511354|gb|EFM80356.1| alanine racemase [Enterococcus faecalis TX0855] Length = 371 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A GV F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGVTGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|16077531|ref|NP_388345.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168] gi|221308287|ref|ZP_03590134.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168] gi|221312609|ref|ZP_03594414.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317532|ref|ZP_03598826.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321808|ref|ZP_03603102.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. SMY] gi|321314138|ref|YP_004206425.1| alanine racemase [Bacillus subtilis BSn5] gi|3915604|sp|P10725|ALR1_BACSU RecName: Full=Alanine racemase 1 gi|1881274|dbj|BAA19301.1| ALANINE RACEMASE [Bacillus subtilis] gi|2632764|emb|CAB12271.1| D-alanine racemase [Bacillus subtilis subsp. subtilis str. 168] gi|320020412|gb|ADV95398.1| alanine racemase [Bacillus subtilis BSn5] Length = 389 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 167/384 (43%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R +IDL+A+K N +M G + AVVK NAYG G + A A +AG Sbjct: 1 MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR +A I VL + P I + ++ SV L ++ Sbjct: 61 ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175 G S + L+VDTG NRLG+ +E + ++ + + +H A AD+ Sbjct: 121 KKG-SLHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179 Query: 176 SVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 +Q ERF+ LI+ + A+S+ L F R GI +YG + S + Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIP 239 Query: 234 TVV----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + T + + ++ GE VSYG + +D+ I +GYADG+ L G D Sbjct: 240 FQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI- 298 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 +KG + I G+I MD M ++ G + + G I +D+ Sbjct: 299 -----------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + + Sbjct: 346 IAGRLETINYEVACTISSRVPRMF 369 >gi|295113944|emb|CBL32581.1| alanine racemase [Enterococcus sp. 7L76] Length = 371 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 AILDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVQFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|309782168|ref|ZP_07676898.1| alanine racemase [Ralstonia sp. 5_7_47FAA] gi|308919234|gb|EFP64901.1| alanine racemase [Ralstonia sp. 5_7_47FAA] Length = 374 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 151/367 (41%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + N+R AVVK NAYG G E++ L F + Sbjct: 3 RPIQAVIHGPALANNLQVARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q + +L G P I+ L + QL G Sbjct: 61 LDEAVRLRQLGWQGPVLLLEGFFKPEDLAIVEQYRLTTTVHCEEQLRMLELARPKG-PIS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + + + ++H + AD P QL F Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGVGTIVHMTHFSDADGPRGI--EHQLVAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL +S+ L P H RPG+ +YG + + +T + Sbjct: 178 QATQGLPG-EASLCNSAATLWHPKAHRDWVRPGVIIYGASPTGVAADIDGTGLMPAMTLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I+ G + YG + + I + A GYADGYP G D H Sbjct: 237 SELIAIQDLQPGATIGYGSRFTVEHPMRIGIVACGYADGYPRHAPGWDGNH-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+ VG + ++G + +DDVA ASGT Y+L+ Sbjct: 290 VLVDGVRTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAHASGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALAPRVP 356 >gi|156933648|ref|YP_001437564.1| alanine racemase [Cronobacter sakazakii ATCC BAA-894] gi|156531902|gb|ABU76728.1| hypothetical protein ESA_01470 [Cronobacter sakazakii ATCC BAA-894] Length = 356 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 157/368 (42%), Gaps = 22/368 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFV 62 + ++ +DL AL++N + + +R +VVK NAYG G +++ AL G F + Sbjct: 2 SRPIQASLDLQALRHNLEVVRRAAPRSRVWSVVKANAYGHGLDRVWSAL---GATDGFAM 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EE + LR + I +L G E +FD + Sbjct: 59 LNLEEAILLRERGWKGPILMLEGFFHADELPLFDKYRLTTSVHSNWQLKALAEAKLNAPL 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++++G NRLG + +++H A AD P ++ Sbjct: 119 DVYLKINSGMNRLGFVPERVHTIWQQLKTIANVGQITLMAHFADADRPDGIDAAMVRI-- 176 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTA 238 + SLA+S+ L P HF RPGI LYG + + +Q V+T Sbjct: 177 -EQAAEGIDAPRSLANSAAALWHPQAHFDWVRPGIVLYGASPSGQWRDIATSGLQPVMTL 235 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++ II ++ G+ V YG + + R+ I + A GYADGYP G Sbjct: 236 KSEIIGVQTLKPGDTVGYGSRYRAAREQRIGIVAGGYADGYPRHA-----------PDGT 284 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G I+G ++MDM D+T +G ++++G + K+DDVA A GT Y+L+ Sbjct: 285 PVLVDGVRTGIVGTVSMDMLAVDLTPCPQAGIGSPVELWGNETKIDDVAAACGTIGYELM 344 Query: 359 VRIGTRYA 366 + R Sbjct: 345 CALAPRVP 352 >gi|29375437|ref|NP_814591.1| alanine racemase [Enterococcus faecalis V583] gi|227554961|ref|ZP_03985008.1| alanine racemase [Enterococcus faecalis HH22] gi|229548787|ref|ZP_04437512.1| alanine racemase [Enterococcus faecalis ATCC 29200] gi|255971304|ref|ZP_05421890.1| alanine racemase [Enterococcus faecalis T1] gi|255973923|ref|ZP_05424509.1| alanine racemase [Enterococcus faecalis T2] gi|256854302|ref|ZP_05559666.1| alanine racemase [Enterococcus faecalis T8] gi|256957289|ref|ZP_05561460.1| alanine racemase [Enterococcus faecalis DS5] gi|257077737|ref|ZP_05572098.1| alanine racemase [Enterococcus faecalis JH1] gi|257081097|ref|ZP_05575458.1| alanine racemase [Enterococcus faecalis E1Sol] gi|257086191|ref|ZP_05580552.1| alanine racemase [Enterococcus faecalis D6] gi|257415416|ref|ZP_05592410.1| alanine racemase [Enterococcus faecalis AR01/DG] gi|257418447|ref|ZP_05595441.1| alanine racemase [Enterococcus faecalis T11] gi|257421098|ref|ZP_05598088.1| alanine racemase [Enterococcus faecalis X98] gi|294781263|ref|ZP_06746609.1| alanine racemase [Enterococcus faecalis PC1.1] gi|307267928|ref|ZP_07549316.1| alanine racemase [Enterococcus faecalis TX4248] gi|307277317|ref|ZP_07558419.1| alanine racemase [Enterococcus faecalis TX2134] gi|307278454|ref|ZP_07559529.1| alanine racemase [Enterococcus faecalis TX0860] gi|307286658|ref|ZP_07566744.1| alanine racemase [Enterococcus faecalis TX0109] gi|307291702|ref|ZP_07571576.1| alanine racemase [Enterococcus faecalis TX0411] gi|312901611|ref|ZP_07760882.1| alanine racemase [Enterococcus faecalis TX0470] gi|312952881|ref|ZP_07771742.1| alanine racemase [Enterococcus faecalis TX0102] gi|29342897|gb|AAO80661.1| alanine racemase [Enterococcus faecalis V583] gi|227175904|gb|EEI56876.1| alanine racemase [Enterococcus faecalis HH22] gi|229306016|gb|EEN72012.1| alanine racemase [Enterococcus faecalis ATCC 29200] gi|255962322|gb|EET94798.1| alanine racemase [Enterococcus faecalis T1] gi|255966795|gb|EET97417.1| alanine racemase [Enterococcus faecalis T2] gi|256709862|gb|EEU24906.1| alanine racemase [Enterococcus faecalis T8] gi|256947785|gb|EEU64417.1| alanine racemase [Enterococcus faecalis DS5] gi|256985767|gb|EEU73069.1| alanine racemase [Enterococcus faecalis JH1] gi|256989127|gb|EEU76429.1| alanine racemase [Enterococcus faecalis E1Sol] gi|256994221|gb|EEU81523.1| alanine racemase [Enterococcus faecalis D6] gi|257157244|gb|EEU87204.1| alanine racemase [Enterococcus faecalis ARO1/DG] gi|257160275|gb|EEU90235.1| alanine racemase [Enterococcus faecalis T11] gi|257162922|gb|EEU92882.1| alanine racemase [Enterococcus faecalis X98] gi|294451599|gb|EFG20055.1| alanine racemase [Enterococcus faecalis PC1.1] gi|306497250|gb|EFM66793.1| alanine racemase [Enterococcus faecalis TX0411] gi|306502136|gb|EFM71420.1| alanine racemase [Enterococcus faecalis TX0109] gi|306504960|gb|EFM74155.1| alanine racemase [Enterococcus faecalis TX0860] gi|306506024|gb|EFM75192.1| alanine racemase [Enterococcus faecalis TX2134] gi|306515569|gb|EFM84096.1| alanine racemase [Enterococcus faecalis TX4248] gi|310629184|gb|EFQ12467.1| alanine racemase [Enterococcus faecalis TX0102] gi|311291299|gb|EFQ69855.1| alanine racemase [Enterococcus faecalis TX0470] gi|315027037|gb|EFT38969.1| alanine racemase [Enterococcus faecalis TX2137] gi|315032367|gb|EFT44299.1| alanine racemase [Enterococcus faecalis TX0017] gi|315034374|gb|EFT46306.1| alanine racemase [Enterococcus faecalis TX0027] gi|315153136|gb|EFT97152.1| alanine racemase [Enterococcus faecalis TX0031] gi|315155155|gb|EFT99171.1| alanine racemase [Enterococcus faecalis TX0043] gi|315157689|gb|EFU01706.1| alanine racemase [Enterococcus faecalis TX0312] gi|315165076|gb|EFU09093.1| alanine racemase [Enterococcus faecalis TX1302] gi|315167887|gb|EFU11904.1| alanine racemase [Enterococcus faecalis TX1341] gi|315171754|gb|EFU15771.1| alanine racemase [Enterococcus faecalis TX1342] gi|315574112|gb|EFU86303.1| alanine racemase [Enterococcus faecalis TX0309B] gi|315581739|gb|EFU93930.1| alanine racemase [Enterococcus faecalis TX0309A] gi|323480028|gb|ADX79467.1| alanine racemase [Enterococcus faecalis 62] gi|327534432|gb|AEA93266.1| alanine racemase [Enterococcus faecalis OG1RF] gi|329575938|gb|EGG57459.1| alanine racemase [Enterococcus faecalis TX1467] Length = 371 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|312113724|ref|YP_004011320.1| alanine racemase [Rhodomicrobium vannielii ATCC 17100] gi|311218853|gb|ADP70221.1| alanine racemase [Rhodomicrobium vannielii ATCC 17100] Length = 384 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 193/364 (53%), Gaps = 9/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L I L AL+ N+ S A TAAVVK NAYGLG + + AL + FFV +++E Sbjct: 24 LVIRLPALRRNYRRAAEASLKAETAAVVKANAYGLGIQPVLTALQKETARTFFVATLDEA 83 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQ 127 + LR + A I+ L G+ PG + D L PV++S+ ++ + + P A+Q Sbjct: 84 LALRTFANDATIYTLNGLMPGTSAVYRDARLRPVLNSLAEVEEWSAYCREHEARLPAAIQ 143 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG R+GL + A + + ++++SHL AD+P +N VQ +RF + S Sbjct: 144 FDTGMCRVGLEPEAADALAEKPELLQPFRPAVLMSHLVRADEPMHPLNEVQFKRFEAVTS 203 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + GI SL +S+G LL YH L RPGI++YGG + + + VV RI+ +R Sbjct: 204 LFPGIAKSLVNSAGCLLRRKYHLDLARPGIAIYGGNPQKVEPSQFEPVVWLFGRIVQVRH 263 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G V YGG + L RDS IA +GYADGY +S D++ +G Sbjct: 264 GEKGFTVGYGGTETLRRDSRIATVGVGYADGYFRGVSSSDAKPGAVGHIGEHAL------ 317 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++MD+T FD TD + G ++++ G +DD+A +GT Y++L +G RY Sbjct: 318 PLIGRVSMDLTTFDATDVPEALVHRGGFVELLGEKTTVDDLARHAGTIGYEVLTSLGRRY 377 Query: 366 AKFY 369 + Y Sbjct: 378 HRVY 381 >gi|78066817|ref|YP_369586.1| alanine racemase [Burkholderia sp. 383] gi|77967562|gb|ABB08942.1| Alanine racemase region [Burkholderia sp. 383] Length = 356 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G + P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYLPEKYRAAWERARACHGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D++ VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLSPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAGRVP 352 >gi|300723428|ref|YP_003712733.1| alanine racemase [Xenorhabdus nematophila ATCC 19061] gi|297629950|emb|CBJ90570.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus nematophila ATCC 19061] Length = 355 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 150/366 (40%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L A ++N + G ++ +VVK NAYG G ++I +L F + Sbjct: 3 RPILATIHLNAFRHNLAVIRQRIGKSKIWSVVKANAYGHGLDRIWQSLMQ--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G + I +T + + ++ Sbjct: 61 MNEAIYLREQGWQGPILLLEGFFKSTDLQIINTYSLTTAVHSYWQLEEIEKITLDKPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +E + K ++SH +D+ QL Sbjct: 121 YLKLNSGMNRLGFTPKEYPQAASMAAGIKNINSVTLMSHFPNSDNEIG--VREQLSVIER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 L + LA+S +L P H RPGI LYG + ++ +T ++ Sbjct: 179 L--QMNSLPHCLANSGAVLWHPETHQDWVRPGIILYGASPSGKWCDIADVGLKATMTLQS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II + GE + YG + + + A GYADGYP G Sbjct: 237 EIIAVHTLSKGEKIGYGSRYTTQKTMRVGTVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG ++MDM D+T +G ++++G D+ +D+VA ++GT Y+LL Sbjct: 286 MVDGVRTQLLGAVSMDMLTVDLTPCPQANIGSVVELWGEDLPVDEVAESAGTIGYELLCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LTRRVP 351 >gi|226326592|ref|ZP_03802110.1| hypothetical protein PROPEN_00442 [Proteus penneri ATCC 35198] gi|225205017|gb|EEG87371.1| hypothetical protein PROPEN_00442 [Proteus penneri ATCC 35198] Length = 363 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 109/370 (29%), Positives = 176/370 (47%), Gaps = 21/370 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N+ + + ++ AVVK NAYG G + A L + F V + Sbjct: 4 ATAVIDRRALRHNFQHVRDYAPHSHLIAVVKANAYGHGLLETAYTLMDN-ADCFGVARIG 62 Query: 67 EGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR I +L G I+ ++ V+ S QL + + Sbjct: 63 EALTLRSGGIVKPILLLEGFFDIADLPILVVNHIETVVHSQEQLEALEQ-ANLDEPVKVW 121 Query: 126 LQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFR 183 +++DTG +RLG+ ++A F S K + Q I+SH + AD+P Q+ F+ Sbjct: 122 MKIDTGMHRLGIRPEDAQAFYLRLSACKNVQQPVNIVSHFSRADEPDVPEATQKQISLFQ 181 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAE 239 I G + S+++S+GIL P H+Q RPGI YG + + K + +T + Sbjct: 182 DFIQDKAG-DKSISASAGILFWPQVHYQWVRPGIITYGISPTGDERTGKDFGLTPAMTLK 240 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +I +RK AGE V YGG +D+ + V AIGY DGYP + G Sbjct: 241 TSLIAVRKHKAGEPVGYGGTWVSEKDTYLGVIAIGYGDGYPRSA-----------PSGTP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +I G VPI+G+++MDM D+ L VGD ++G + ++++A SG + Y+L+ Sbjct: 290 VWINGRKVPIVGRVSMDMISVDLGTELIDSVGDEAILWGDVLPVEEIAKYSGISAYELIT 349 Query: 360 RIGTRYAKFY 369 ++ +R Y Sbjct: 350 KLTSRVIMEY 359 >gi|302524053|ref|ZP_07276395.1| alanine racemase [Streptomyces sp. AA4] gi|302432948|gb|EFL04764.1| alanine racemase [Streptomyces sp. AA4] Length = 373 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 159/368 (43%), Gaps = 21/368 (5%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S+ IDL AL++N + A + A VVK + YG G + A AG Sbjct: 4 SSPHAETVIDLGALRHNVSLLAARAPGAAVMCVVKADGYGHGAVPVGRAAVEAGASWLGT 63 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121 S++E + LR R+F + + ++ +SS+ + + G Sbjct: 64 CSLQEALDLRAAGLSGRLFSWLDVPELDFTPGIEADIDLGVSSLGELARVEAAAERAGKR 123 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG +R G + + + ++ I SHLACAD+ Q + Sbjct: 124 ARVHLKIDTGLSRNGCPPAAWPELVEAAAKARGVEVVAIWSHLACADELGHASIDAQAKL 183 Query: 182 FRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 F + LA+S+ L P+ HF+L RPGI++YG ++ V+T Sbjct: 184 FAEAYDAARAAGLDPIRHLANSAATLTRPDLHFELVRPGIAMYGLNPVP-TDDDLRPVMT 242 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++L + AGE VSYG D+ +A+ +GYADG P TLSG Sbjct: 243 FRSTVVLTKPLAAGESVSYGHTWTAREDTTLALVPVGYADGVPRTLSGRMD--------- 293 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 ++ G P++G+I MD + ++ + VGD + +FG + + A GT Sbjct: 294 --VWLGGKRRPVVGRICMDQLVVNVGNEDVPTVGDEVVLFGAGRSGEPTAREWADKLGTI 351 Query: 354 NYDLLVRI 361 +Y+++ + Sbjct: 352 DYEIVTSM 359 >gi|291003863|ref|ZP_06561836.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338] Length = 378 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 164/380 (43%), Gaps = 27/380 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H++ L+ID+ A+++N + A + ART +VK + YG G +A A AG Sbjct: 5 HAHR-ADLRIDVDAIRHNVGVLAARAAGARTMVIVKSDGYGHGAVTVARAALEAGAGQIG 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV 120 V ++ E V LR A + + SSV + G+ Sbjct: 64 VAALGEAVALREAGITAPLMCWLYSRGDDFAPALRHGVELSASSVRGLREIAATAAELGL 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSV 177 L++DTG R G E + + + + SHLACAD+ Sbjct: 124 VARLHLKIDTGLCRSGCPEAEWPNLVDEAAKAEADGHVEVVAVWSHLACADELGHPSIDN 183 Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPM 232 Q RFR + G LA+S+ +L P+ HF++ RPGI++YG + H + Sbjct: 184 QALRFRRAYERARTAGLGPIRHLANSAAVLTRPDLHFEMVRPGIAVYGLDPVPQDGDHGL 243 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T + + L ++ AGE VSYG R +A+ +GYADG P TLSG S Sbjct: 244 RPAMTFRSSVSLTKRVAAGESVSYGHTWTADRPVNLALVPVGYADGVPRTLSGRMS---- 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 ++ G P++G++ MD + + D + GD + +FGP + + A Sbjct: 300 -------VWLAGRRRPVVGRVCMDQLVV-LCDDDVVREGDEVILFGPGDRGEPTAAEWAD 351 Query: 349 ASGTTNYDLLVRI-GTRYAK 367 GT +Y+++ + R + Sbjct: 352 ELGTIHYEIVTGMYRPRVTR 371 >gi|167578429|ref|ZP_02371303.1| alanine racemase [Burkholderia thailandensis TXDOH] Length = 374 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 158/366 (43%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + N+R +VVK NAYG G E++ PAL + + Sbjct: 3 RPIVARIHPDAIAHNLAIVRKKAPNSRVWSVVKANAYGHGIERVYPALAD--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKLLTSAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG D + ++ H A ADD Q+ F Sbjct: 121 QLKMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMMHFANADDGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG + R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYPRHA-----------PSGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|145294758|ref|YP_001137579.1| alanine racemase [Corynebacterium glutamicum R] gi|166967410|sp|A4QBT0|ALR_CORGB RecName: Full=Alanine racemase gi|140844678|dbj|BAF53677.1| hypothetical protein [Corynebacterium glutamicum R] Length = 361 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 20/372 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L KIDL A+ +N + ++G A+ AVVK NAY G EK+AP + G F V + Sbjct: 2 NLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E ++LR + + D N+ + S + Sbjct: 62 LAEAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKALID--TDAEHIRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++++D+G +R G+ QE +++ + +HLACAD+P + Q+ FR Sbjct: 120 SIKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRR 179 Query: 185 --LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 ++ G+E + +S L + H ++ RPG++ YG + H ++ +T E Sbjct: 180 ALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGREHGLKPAMTWE 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A++ ++++ AG+ SYG + +AV GYADG P G S Sbjct: 240 AKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFS----------- 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357 I G P +G++ MD + + D+ +E G IFG + D A T NY++ Sbjct: 289 VTIDGVDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYEV 348 Query: 358 LVRIGTRYAKFY 369 + R R + Y Sbjct: 349 VCRPTGRTVRAY 360 >gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum ATCC 35910] gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum ATCC 35910] Length = 815 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 150/369 (40%), Gaps = 18/369 (4%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + +L + A+VK NAYGLG +++ L + + V +E Sbjct: 454 LEVNLNAILHNINYHKSLLKPGTKMMAMVKANAYGLGSFEVSEFLQHHHIDYLGVAYADE 513 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV+LR I V+ + II + S FY + G +P Sbjct: 514 GVELRKKGITTPIIVMNPEQHSYQTIIEYNLEPEIYSFRVLELFYEAVQKSGYDKKYPIH 573 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++++TG +RLG E + +K + S+ + QLE F Sbjct: 574 IKLETGMHRLGFKDFELDQLSETLSHKNVKVQSMFSHLSSSDMPEEKEFTLKQLEVFEKN 633 Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 S+ + +S+GI ++ + R GI + G + +++VV+ + Sbjct: 634 SSYLIEKLGYTSIRHILNSAGITSYKDHQHDMVRIGIGMLGESADPEIQKQLRSVVSFKT 693 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I I GE V Y + K + IA +GYADG P + G Sbjct: 694 VISQISTVENGESVGYSRRYKTDHPTRIATIPVGYADGIPRLIGNQV----------GNV 743 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + + PI+G I MDM M ++ +++ GD + +F L + A T Y++L Sbjct: 744 GVNKTLAPIVGNICMDMMMINVDHIPNVKEGDTVTVFNAHPSLKEFAGYCKTITYEVLTS 803 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 804 ISPRVKRIY 812 >gi|51594730|ref|YP_068921.1| alanine racemase [Yersinia pseudotuberculosis IP 32953] gi|186893733|ref|YP_001870845.1| alanine racemase [Yersinia pseudotuberculosis PB1/+] gi|51588012|emb|CAH19616.1| alanine racemase (biosynthetic) [Yersinia pseudotuberculosis IP 32953] gi|186696759|gb|ACC87388.1| alanine racemase [Yersinia pseudotuberculosis PB1/+] Length = 359 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + L+ +R AVVK NAYG G A L + + V + Sbjct: 4 ATAVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARIS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + + Sbjct: 62 EALMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAATLSAPINAWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +A F S + + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARI 242 + G + S+A+S GIL P H RPGI LYG + + + +T ++ + Sbjct: 182 AAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDTPYGRDFGLLPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + +VGD ++G ++ ++ VA +G + Y+L+ + Sbjct: 290 NGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|33866630|ref|NP_898189.1| alanine racemase [Synechococcus sp. WH 8102] gi|33633408|emb|CAE08613.1| putative alanine racemase [Synechococcus sp. WH 8102] Length = 376 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 109/379 (28%), Positives = 178/379 (46%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++ TA++ N + L + AVVK + YG G +A A G V Sbjct: 7 RQRAWVEVYPTAIEANCRLLCRQLVTGCQLMAVVKADGYGHGAVTVARASLRGGASSLGV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--G 119 +++EG++LR +A + +L + P + + L+P +SS+ + + + + Sbjct: 67 ATLQEGLELRDAGIEAPVLILSALPSPEDLRHCLEQRLMPTLSSLDEANTAAAVAAERGN 126 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P L++DTG RLG QE + +L + SHLACAD+ + +QL Sbjct: 127 ERFPVQLKLDTGMARLGGEWQEGAQLVQSIRTLPQLELVGLYSHLACADELGDQLTHLQL 186 Query: 180 ERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 +RFR++I G+ LA+S+G L P H + R G++LYG + + +Q Sbjct: 187 QRFRSVIEALPDGGSGLCCHLANSAGTLQDPRLHLDMVRVGLALYGQSPADHLGLDLALQ 246 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + +AR+ LIR+ +G VSYG + +R S +AV AIGYADG LSG Sbjct: 247 PALAVKARVSLIREVPSGSGVSYGHRFVTSRPSRLAVIAIGYADGVVRALSGRID----- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 +G VP +G ITMD + D TD + VGD + + G D I+ D + Sbjct: 302 ------VLHRGRRVPQVGNITMDQIILDATDVEELTVGDNVTLLGQDGDDCIRPQDWSAR 355 Query: 350 SGTTNYDLLVRIGTRYAKF 368 G+ +++L R + Sbjct: 356 CGSIPWEILCGFKHRLPRV 374 >gi|311744760|ref|ZP_07718556.1| alanine racemase [Aeromicrobium marinum DSM 15272] gi|311311877|gb|EFQ81798.1| alanine racemase [Aeromicrobium marinum DSM 15272] Length = 375 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 158/386 (40%), Gaps = 32/386 (8%) Query: 1 MHSN---EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M ++ +DL A + N + L+ + AVVK +AYG G +I A AG Sbjct: 1 MSAHGGPPQAEAHVDLDAYRENLRLLGDLAPASALMAVVKADAYGHGMTEIGRAARQAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 V +VEE + LR + ++ SSV Q ++++ Sbjct: 61 DWLGVATVEEALALRSGGDDGPVLCWLASPGASYAAAVAADVEVTASSVGQ---LEEIVA 117 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHV 174 G L+VDTG +R G + +E D + + SHLACADDP Sbjct: 118 AGGRPRVQLKVDTGLSRNGAAPEEWPDLVEAAARARDAGRIEITGTWSHLACADDPEHPA 177 Query: 175 NSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK- 228 N +Q FR + + LA+S+ L P+ H L R GI+ YG Sbjct: 178 NELQERAFRAALDVVTAAGVDPGLRHLANSAATLTRPSTHLDLVRVGIAAYGIPPDPRLS 237 Query: 229 -SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 P++ +T AR+ +R+ AG VSYG + R + + + +GY +G +G Sbjct: 238 IDLPLRPALTLRARLAAVRRVPAGTGVSYGHRYVTERPTTLGLVPVGYGEGVHRAATGRA 297 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343 G VP++G I MD + D+ D + GD + +FG + Sbjct: 298 EAGFA-----------GRRVPVVGTICMDQLVVDLGDLP-ADRGDVVTLFGDGSDGEPSA 345 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 D A A+GT Y+++ +G R Y Sbjct: 346 TDWAEAAGTIGYEVVTGLGGRIRHTY 371 >gi|315174906|gb|EFU18923.1| alanine racemase [Enterococcus faecalis TX1346] Length = 371 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 149/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N + L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQE 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38] gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38] Length = 780 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 159/369 (43%), Gaps = 19/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L A+ +N + L + + +VK YG G +IA L + V V +E Sbjct: 420 LEINLDAISHNLNFYKSKLKHDTKIMVMVKAFGYGNGGYEIAKLLEHHKVDYLGVAFADE 479 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126 G++LR I VL + +I + S F + ++P + Sbjct: 480 GIELRKAGITTPIMVLNPENSSFRAMIAYNLEPEIYSITGLQAFLKIAQEQNISNYPIHI 539 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185 ++DTG +RLG + + + N ++ + SHLA +DD + +Q +RF + Sbjct: 540 KLDTGMHRLGFEMPQMDELVSLLKNNNFIKIKSVFSHLAASDDKKLNEFTQLQFQRFDEM 599 Query: 186 ISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + + ++SGI P ++ R GI LYG + + ++ V T + Sbjct: 600 YNAIAAVLSYIPIRHILNTSGIFNYPEKQMEMARLGIGLYGIGNSEQELQTLENVSTLKT 659 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I IR+ L GE + Y + +T+ +A IGYADG G Sbjct: 660 IISQIREVLPGESIGYSRKYSVTKKMKVATIPIGYADGIKRAWGN----------EKGYV 709 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I ILG I MDM M D+T+ S GD + +FG + K+ ++A GT Y++L Sbjct: 710 IINNEKATILGSICMDMMMVDVTNI-SCNTGDEVIVFGKNPKVTEMASVIGTIPYEILTG 768 Query: 361 IGTRYAKFY 369 I R + + Sbjct: 769 ISQRVKRIF 777 >gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922] gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922] Length = 824 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 103/371 (27%), Positives = 158/371 (42%), Gaps = 22/371 (5%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L L++N + +L + A+VK N+YG+G +IA L V V +E Sbjct: 463 LEINLEHLEHNIQTYRSLLKPETKIMAMVKANSYGIGSFEIANVLQQMKVNFLGVAIADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---SHPY 124 G +LR I V+ + D L P I + L + + + P Sbjct: 523 GKELRKAGISTPIIVMNPEQHS-YATVIDYQLEPEIYTARVLQLFLQKLQEKQISQPFPI 581 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFR 183 ++++TG NRLG + + + L + I SHLA AD P Q F Sbjct: 582 HIKLETGMNRLGFKPNQLDELIEILRSTNLVYVRSIFSHLATADIPTEKDYAQQQFGVFN 641 Query: 184 ---TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I+ G + +S GI+ P + + + R GI +YG + + ++ VV Sbjct: 642 SSYHYITDKIGYYPIKHILNSPGIVAYPQHQYDMVRLGIGMYGYCEYSDFMQKLENVVQF 701 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I I + GE VSYG + R S IA +GYADG +L + Sbjct: 702 KTVISQINEIEKGETVSYGRRFTAERHSRIATLPVGYADGIRRSLG----------YGNA 751 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 K I G + +G I MDM M D+TD + GD + IFG + L A T Y++L Sbjct: 752 KVNINGQLAATVGTICMDMMMVDVTDI-DCKAGDEVIIFGENPSLSKFAEWMQTIPYEVL 810 Query: 359 VRIGTRYAKFY 369 I +R + Y Sbjct: 811 TSISSRVQRVY 821 >gi|187928333|ref|YP_001898820.1| alanine racemase [Ralstonia pickettii 12J] gi|226711056|sp|B2UAX2|ALR_RALPJ RecName: Full=Alanine racemase gi|187725223|gb|ACD26388.1| alanine racemase [Ralstonia pickettii 12J] Length = 374 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 153/367 (41%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + N+R AVVK NAYG G E++ L F + Sbjct: 3 RPIQAVIHGPALANNLQIARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q + +L G P I+ L + QL G + Sbjct: 61 LDEAVRLRQLGWQGPVLLLEGFFKPEDLAIVEQYRLTTTVHCEEQLRMLELARLKGPT-S 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + + + ++H + AD P QL F Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGVGTIVHMTHFSDADGPRGI--EHQLAAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL++S+ L P H RPG+ +YG + + ++ + Sbjct: 178 RATQGLPG-EASLSNSAATLWHPKAHRDWVRPGVIMYGASPTGVAADIDGTGLMPAMSLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I+ G + YG + + I V A GYADGYP G D H Sbjct: 237 SELIAIQDLQPGATIGYGSRFTVEHPMRIGVVACGYADGYPRHAPGWDGNH-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+ VG + ++G + +DDVA ASGT Y+L+ Sbjct: 290 VLVDGVRTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAQASGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALAPRVP 356 >gi|22124492|ref|NP_667915.1| alanine racemase [Yersinia pestis KIM 10] gi|45440330|ref|NP_991869.1| alanine racemase [Yersinia pestis biovar Microtus str. 91001] gi|108809954|ref|YP_653870.1| alanine racemase [Yersinia pestis Antiqua] gi|108813509|ref|YP_649276.1| alanine racemase [Yersinia pestis Nepal516] gi|145600898|ref|YP_001164974.1| alanine racemase [Yersinia pestis Pestoides F] gi|150260633|ref|ZP_01917361.1| alanine racemase (biosynthetic) [Yersinia pestis CA88-4125] gi|162420301|ref|YP_001605330.1| alanine racemase [Yersinia pestis Angola] gi|165926799|ref|ZP_02222631.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936464|ref|ZP_02225032.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275] gi|166010502|ref|ZP_02231400.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213905|ref|ZP_02239940.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004] gi|167402467|ref|ZP_02307924.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419354|ref|ZP_02311107.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426158|ref|ZP_02317911.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470981|ref|ZP_02335685.1| alanine racemase [Yersinia pestis FV-1] gi|218927526|ref|YP_002345401.1| alanine racemase [Yersinia pestis CO92] gi|229836578|ref|ZP_04456744.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis Pestoides A] gi|229840186|ref|ZP_04460345.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842268|ref|ZP_04462423.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis biovar Orientalis str. India 195] gi|229903994|ref|ZP_04519107.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis Nepal516] gi|270489020|ref|ZP_06206094.1| alanine racemase [Yersinia pestis KIM D27] gi|294502386|ref|YP_003566448.1| alanine racemase [Yersinia pestis Z176003] gi|20137380|sp|Q8ZJ10|ALR1_YERPE RecName: Full=Alanine racemase 1 gi|226711068|sp|A9QYT2|ALR_YERPG RecName: Full=Alanine racemase gi|21957285|gb|AAM84166.1|AE013660_1 alanine racemase 1 [Yersinia pestis KIM 10] gi|45435186|gb|AAS60746.1| alanine racemase (biosynthetic) [Yersinia pestis biovar Microtus str. 91001] gi|108777157|gb|ABG19676.1| alanine racemase (biosynthetic) [Yersinia pestis Nepal516] gi|108781867|gb|ABG15925.1| alanine racemase (biosynthetic) [Yersinia pestis Antiqua] gi|115346137|emb|CAL19005.1| alanine racemase (biosynthetic) [Yersinia pestis CO92] gi|145212594|gb|ABP42001.1| alanine racemase (biosynthetic) [Yersinia pestis Pestoides F] gi|149290041|gb|EDM40118.1| alanine racemase (biosynthetic) [Yersinia pestis CA88-4125] gi|162353116|gb|ABX87064.1| alanine racemase [Yersinia pestis Angola] gi|165915580|gb|EDR34189.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275] gi|165921422|gb|EDR38646.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990592|gb|EDR42893.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204880|gb|EDR49360.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963348|gb|EDR59369.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048155|gb|EDR59563.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054869|gb|EDR64671.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679764|gb|EEO75867.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis Nepal516] gi|229690578|gb|EEO82632.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis biovar Orientalis str. India 195] gi|229696552|gb|EEO86599.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706262|gb|EEO92270.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis Pestoides A] gi|262360469|gb|ACY57190.1| alanine racemase [Yersinia pestis D106004] gi|262364415|gb|ACY60972.1| alanine racemase [Yersinia pestis D182038] gi|270337524|gb|EFA48301.1| alanine racemase [Yersinia pestis KIM D27] gi|294352845|gb|ADE63186.1| alanine racemase [Yersinia pestis Z176003] gi|320013815|gb|ADV97386.1| alanine racemase 1, PLP-binding, biosynthetic [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 359 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + L+ +R AVVK NAYG G A L + + V + Sbjct: 4 ATAVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARIS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + + Sbjct: 62 EALMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAATLSAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +A F S + + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARI 242 + G + S+A+S GIL P H RPGI LYG + + + +T ++ + Sbjct: 182 AAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + +VGD ++G ++ ++ VA +G + Y+L+ + Sbjct: 290 NGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|229017415|ref|ZP_04174318.1| Alanine racemase [Bacillus cereus AH1273] gi|228743978|gb|EEL94077.1| Alanine racemase [Bacillus cereus AH1273] Length = 408 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 162/376 (43%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AG+ V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKRVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + +++ + + L +++ + Sbjct: 88 EAIELREAGITVPILILGYTSVAAVEDAIQYDVMMTVYRIEDLQSINEIANRLQKKVQIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADETDKAYTNMQTSLFEKA 207 Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ ++S+G + N + R GI +YG H ++ ++ Sbjct: 208 VNTAKELGIHFPYIHSSNSAGSMELSNTFQNMVRVGIGIYGMYPSKEVDHTVVALKPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHAKKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M DIT ++ ++VGD + +G I +++VA GT Sbjct: 317 GHALINGVRVPVIGRVCMDQLMLDITKAMPVQVGDEVVFYGKQGEEEIAVEEVADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|297624657|ref|YP_003706091.1| alanine racemase [Truepera radiovictrix DSM 17093] gi|297165837|gb|ADI15548.1| alanine racemase [Truepera radiovictrix DSM 17093] Length = 374 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 108/372 (29%), Positives = 168/372 (45%), Gaps = 21/372 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +I L AL N S+ A + A+ VK NAYG G ++A L GV F V + + Sbjct: 8 PHAEISLRALARNLASLRART-RAQLLVPVKANAYGHGAPEVARQLERLGVPWFGVATAD 66 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR A I + ++ G + + + + + L Sbjct: 67 EALELRGAGISADILIFGPVYEG-LEALIAQGVALSVVDARSAEAVVRAAGSVPGARVHL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 + DTG RLG L L + L + +HLA AD+P S VQL RF + Sbjct: 126 KTDTGMGRLGEPLAATLKTAERLSRARGVTLEGLWTHLAAADEPDSSFTQVQLARFSDTL 185 Query: 187 S--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTA 238 + GI L ++ P HF L RPGI++YG + + V+T Sbjct: 186 AALGRAGITVPLKHAANSAALFAHPASHFDLVRPGIAVYGYHASPFIAALAPELTPVMTL 245 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A + +++ AG +SYGG + RD+ +A GYADGYP LS Sbjct: 246 SAPVTFVKRVAAGTPISYGGLWRAPRDTTVATVRFGYADGYPRGLS---------ATPHA 296 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357 + ++G + PI+G++ MD M D+ D ++ VG+ +FGP+ +D+A GT +Y+L Sbjct: 297 RVRLQGRLCPIVGRVCMDQLMVDVGDL-TVTVGERAVLFGPEGPTAEDLAGGVGTISYEL 355 Query: 358 LVRIGTRYAKFY 369 L ++G R A+ Y Sbjct: 356 LTQLGRRVARSY 367 >gi|300859953|ref|ZP_07106041.1| alanine racemase [Enterococcus faecalis TUSoD Ef11] gi|300850771|gb|EFK78520.1| alanine racemase [Enterococcus faecalis TUSoD Ef11] gi|315145182|gb|EFT89198.1| alanine racemase [Enterococcus faecalis TX2141] gi|315163090|gb|EFU07107.1| alanine racemase [Enterococcus faecalis TX0645] Length = 371 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 146/379 (38%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF--YSKLMSCGV 120 ++E ++LR Q I +L + ++ +L +++ L Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEATLQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|238794660|ref|ZP_04638266.1| Alanine racemase 1 [Yersinia intermedia ATCC 29909] gi|238726049|gb|EEQ17597.1| Alanine racemase 1 [Yersinia intermedia ATCC 29909] Length = 359 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 168/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPILVANRIETAVHSIEQLEALEAADLPAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F + + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPEQADAFYQRLCACRNVIQPVNIMSHFSRADEPEVETTHQQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 G + S+A+S GILL P H RPGI LYG + + + ++ + Sbjct: 182 AIGKPG-KQSIAASGGILLWPQAHRDWVRPGIILYGVSPMDEPYASHFDLLPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG D+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGEPVGYGGTWVSEHDTRLGVVAIGYGDGYPRSA-----------PSGTPMWV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + S +VGD + ++G D+ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVCIVGRVSMDMISVDLGPNSSDKVGDEVLLWGADLPVEKIAAYTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|238782924|ref|ZP_04626952.1| Alanine racemase 1 [Yersinia bercovieri ATCC 43970] gi|238716127|gb|EEQ08111.1| Alanine racemase 1 [Yersinia bercovieri ATCC 43970] Length = 359 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 167/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPILVANRIETAIHSIEQLEALEAADLPAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ + A S + + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPEHAPALYQRLSTCRNVIQPVNIMSHFSRADEPQVETTRQQLSCFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G + S+A+S GILL P H RPGI LYG + + + ++ + Sbjct: 182 AADKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPLDEPYASHFNLLPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGEPVGYGGTWISERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ +VGD + ++G ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVCIVGRVSMDMISVDLGPDAHDKVGDEVLLWGAELPVERIAACTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|241662911|ref|YP_002981271.1| alanine racemase [Ralstonia pickettii 12D] gi|240864938|gb|ACS62599.1| alanine racemase [Ralstonia pickettii 12D] Length = 374 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 151/367 (41%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + N+R AVVK NAYG G E++ L F + Sbjct: 3 RPIQAVIHGPALANNLQVARRHAPNSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q + +L G P I+ L + QL G Sbjct: 61 LDEAVRLRQLGWQGPVLLLEGFFKPEDLAIVEQFRLTTTVHCEEQLRMLELARPKG-PIS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + + + ++H + AD P QL F Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGVGTIVHMTHFSDADGPRGI--EHQLVAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL +S+ L P H RPG+ +YG + + +T + Sbjct: 178 QATQGLPG-EASLCNSAATLWHPKAHRDWVRPGVIMYGASPTGVAADIDGTGLMPAMTLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I+ G + YG + + I + A GYADGYP G D H Sbjct: 237 SELIAIQDLQPGATIGYGSRFTVEHPMRIGIVACGYADGYPRHAPGWDGNH-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+ VG + ++G + +DDVA ASGT Y+L+ Sbjct: 290 VLVDGVRTHIVGRVSMDMITVDLAGVPEARVGTPVTLWGEGLPIDDVAHASGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALAPRVP 356 >gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC 23134] gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC 23134] Length = 833 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 150/376 (39%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + + +VK AYG G +IA L V V +E Sbjct: 466 LEINLGALVHNLNFYREQLPSHTKMMVMVKAFAYGSGSAEIAHLLQFHRVDYLGVAYADE 525 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 GV LR I V+ +K++ + S F L + L+ Sbjct: 526 GVFLRESGIDLPIMVMNPSEDTFDKLLQYDLEPEMYSFKVLDEFIHFLKEQQTTAKVHLK 585 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--------IISHLACADD-PSSHVNSVQ 178 +DTG +RLG ++E Q + + SHLA +D+ + + Q Sbjct: 586 IDTGMHRLGFVVEEVPRLLQVLQQPDTQQKAPLDYLSIASVFSHLAGSDEATHNAYSQQQ 645 Query: 179 LERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 + F + + +S GI+ P F + R GI LYG +Q Sbjct: 646 ITLFEAATKQIETALGYEVIKHILNSPGIVRFPEASFDMVRLGIGLYGIEANQIAQSQLQ 705 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ I I+ GE V Y + + + A AIGYADG+ S Sbjct: 706 SISRLTTTISQIKYLQPGETVGYSRKGVASHTTKTATVAIGYADGFSRAFSNGV------ 759 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 GK + G VP++G + MDM M D+T GD + IF ++ + D+A + T Sbjct: 760 ----GKVMVNGAKVPVIGNVCMDMCMIDVTGV-EATEGDEVIIFNEELSILDLAQSIDTI 814 Query: 354 NYDLLVRIGTRYAKFY 369 Y++L I R + + Sbjct: 815 PYEILTNISQRVKRVF 830 >gi|260061407|ref|YP_003194487.1| Mur ligase domain-containing protein/alanine racemase [Robiginitalea biformata HTCC2501] gi|88785539|gb|EAR16708.1| Mur ligase domain protein/alanine racemase [Robiginitalea biformata HTCC2501] Length = 370 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 150/375 (40%), Gaps = 19/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + L+IDL AL +N+ + L R VVK YG IA L G Sbjct: 1 MPQSRDTVLEIDLGALAHNYRFLRDRLRPETRFLGVVKAYGYGSDSLAIALKLEALGADY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118 V +EG LR + I VL+ G + +I + S F Sbjct: 61 LAVAFTDEGTFLREGGVRLPILVLHPQPSGLDDLITHRLEPALYSLRILKMFLETARRRE 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSV 177 P L+ +TG NRLG + + + SHLA +DDP S+ Sbjct: 121 ARGFPVHLKFNTGLNRLGFWENDVEWIAGQLEGESSLTIRSAFSHLAASDDPGSNTFTQR 180 Query: 178 QLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q++ F +++ + L ++SGIL P+ + + R GI LYG + + Sbjct: 181 QIKSFAAIVADIREQLPGTPFFHLLNTSGILNFPDAQWDMVRSGIGLYGYGNDPEVDPLL 240 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V RI + K GE V Y + A IG+ADG Sbjct: 241 RPVARLRTRISQLHKIEPGEWVGYNKGYRAADFRTTATLPIGHADGIGRIYG-------- 292 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 G ++G PI+G + MDMTM D+T + GD + +FG +D+A +GT Sbjct: 293 --KEHGAFHVRGKRAPIIGNVCMDMTMIDVTGIP-CKEGDEVVVFGNGHSAEDLARGAGT 349 Query: 353 TNYDLLVRIGTRYAK 367 +Y+LL I R A+ Sbjct: 350 ISYELLTGISRRVAR 364 >gi|170026067|ref|YP_001722572.1| alanine racemase [Yersinia pseudotuberculosis YPIII] gi|169752601|gb|ACA70119.1| alanine racemase [Yersinia pseudotuberculosis YPIII] Length = 359 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + L+ +R AVVK NAYG G A L + + V + Sbjct: 4 ATAVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARIS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + + Sbjct: 62 EALMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAATLSAPINAWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +A F S + + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARI 242 + G + S+A+S GIL P H RPGI LYG + + + +T ++ + Sbjct: 182 AAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + +VGD ++G ++ ++ VA +G + Y+L+ + Sbjct: 290 NGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|167839235|ref|ZP_02465962.1| alanine racemase [Burkholderia thailandensis MSMB43] Length = 374 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + ++R +VVK NAYG G E+I PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPSSRVWSVVKANAYGHGIERIYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + D + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFDAADVETADRYRLTVAVHGDEPLKLLTSSKTARPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A ADD Q+ F Sbjct: 121 QLKMNSGMNRLGYRPDAFRAAWERAATAPSIGRIALMMHFANADDGE---IDWQMSMFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG + R I V A GYADGYP G Sbjct: 237 RIIGVQTLSPGETVGYGRRFAAGRAMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSTVELWGEQVRVDDVAQAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|290475457|ref|YP_003468345.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii SS-2004] gi|289174778|emb|CBJ81579.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii SS-2004] Length = 355 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 150/366 (40%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L A ++N + G+++ +VVK NAYG G ++I +L F + Sbjct: 3 RPILATIHLDAFRHNLAVIRQKVGDSKIWSVVKANAYGHGLDRIWQSLMQ--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR + Q I +L G + + D + + Sbjct: 61 MNEAIYLREHGWQGPILLLEGFFKLSDLQLIDQYGLTTTVHSYWQLKAIEEARLNNPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +E + K + +++H A +D+ Q Sbjct: 121 YLKINSGMNRLGFTPEEYSQVVSMANCIKNIKSVTLMTHFANSDNEIGI--DEQFAVVEC 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 L + LA+S +L P H RPGI LYG + ++ ++ + Sbjct: 179 L--KMDLLPRCLANSGAVLWHPKTHGDWVRPGIILYGASPSGKWRDIADVGLKPAMSLHS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II + G + YG + + I A GYADGYP S G Sbjct: 237 EIIAVHDLPKGAKIGYGSRYTTQYPTRIGTVACGYADGYPRHAS-----------TGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG I+MDM D+T E+G ++++G ++ +D+VA ++GT Y+LL Sbjct: 286 LVGGVRTQLLGAISMDMMTVDLTPCPQTEIGSTVELWGENLPVDEVAESAGTIGYELLCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LAIRVP 351 >gi|229015244|ref|ZP_04172279.1| Alanine racemase [Bacillus mycoides DSM 2048] gi|228746046|gb|EEL96014.1| Alanine racemase [Bacillus mycoides DSM 2048] Length = 340 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 154/350 (44%), Gaps = 24/350 (6%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 A VK N YG G +++ N+GV V S+EE +KLR QA I +L P Sbjct: 1 MATVKANGYGHGAVEVSKKAINSGVDYLAVASLEEAIKLRKSDIQAPILILGYTPPSAAN 60 Query: 93 IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + +L I + S G ++VDTG RLGL +EA DF H Sbjct: 61 HVVYWDLTQSIFDIEHAEALSTSGQILGKKAKVHVKVDTGMGRLGLQAEEASDFIHIVSR 120 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGP 206 L + SH A AD+ Q R++ L+ + + +A+S+ + P Sbjct: 121 MDGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAATIEMP 180 Query: 207 NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263 + + + R GIS+YG + ++ + + ++I I+ G VSYG Sbjct: 181 DMTYDMVRIGISMYGLYPSKEVNKTKVNLRQAIQLKTKVIYIQTLEKGYGVSYGATNIER 240 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 ++IA IGYADGY LSG I G + P+ GKI MD M D+T Sbjct: 241 DKAIIATIPIGYADGYSRRLSGT-----------AYVLIHGQLAPVFGKICMDFCMIDVT 289 Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D + +GD + ++G I LD+VA GT +Y++ +G R + Y Sbjct: 290 DIKGVNIGDEVVVYGGQGDYFISLDEVASMLGTISYEVACNLGQRVPRIY 339 >gi|228919176|ref|ZP_04082550.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840487|gb|EEM85754.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 389 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + +L Sbjct: 61 ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIELW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A +D+ + Sbjct: 121 DGSPVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ L ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKLVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|152970855|ref|YP_001335964.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895366|ref|YP_002920101.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044] gi|150955704|gb|ABR77734.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547683|dbj|BAH64034.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 356 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL+ N + + +R AVVK NAYG G ++ AL F + + Sbjct: 3 RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALSA--ADGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + D + + Sbjct: 61 LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQAKLRAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A++P V ++ Sbjct: 121 YLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---E 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SLA+S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ GE + YGG + T++ I + A GYADGYP G Sbjct: 238 EIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPR-----------VAPSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +G ++++G +IK+DDVA +SGT Y+L+ Sbjct: 287 LVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|19551822|ref|NP_599824.1| alanine racemase [Corynebacterium glutamicum ATCC 13032] gi|62389477|ref|YP_224879.1| alanine racemase [Corynebacterium glutamicum ATCC 13032] gi|23813648|sp|Q8RSU9|ALR_CORGL RecName: Full=Alanine racemase gi|158428171|pdb|2DY3|A Chain A, Crystal Structure Of Alanine Racemase From Corynebacterium Glutamicum gi|158428172|pdb|2DY3|B Chain B, Crystal Structure Of Alanine Racemase From Corynebacterium Glutamicum gi|158428173|pdb|2DY3|C Chain C, Crystal Structure Of Alanine Racemase From Corynebacterium Glutamicum gi|158428174|pdb|2DY3|D Chain D, Crystal Structure Of Alanine Racemase From Corynebacterium Glutamicum gi|18699004|gb|AAL77207.1| alanine racemase [Corynebacterium glutamicum] gi|21323353|dbj|BAB97981.1| Alanine racemase [Corynebacterium glutamicum ATCC 13032] gi|41324811|emb|CAF19293.1| ALANINE RACEMASE [Corynebacterium glutamicum ATCC 13032] Length = 361 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 20/372 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L KIDL A+ +N + ++G A+ AVVK NAY G EK+AP + G F V + Sbjct: 2 NLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E ++LR + + D N+ + S + + Sbjct: 62 LAEAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKAL--IETDAEHIRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++++D+G +R G+ QE +++ + +HLACAD+P + Q+ FR Sbjct: 120 SIKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRR 179 Query: 185 --LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 ++ G+E + +S L + H ++ RPG++ YG H ++ +T E Sbjct: 180 ALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWE 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A++ ++++ AG+ SYG + +AV GYADG P G S Sbjct: 240 AKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFS----------- 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357 I G P +G++ MD + + D+ +E G IFG + D A T NY++ Sbjct: 289 VTIDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYEV 348 Query: 358 LVRIGTRYAKFY 369 + R R + Y Sbjct: 349 VCRPTGRTVRAY 360 >gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 821 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG N+ + T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQIINNVS--TLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|227528902|ref|ZP_03958951.1| alanine racemase [Lactobacillus vaginalis ATCC 49540] gi|227351176|gb|EEJ41467.1| alanine racemase [Lactobacillus vaginalis ATCC 49540] Length = 374 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 154/387 (39%), Gaps = 31/387 (8%) Query: 1 MHSNEF--LRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S +L +DL A+K+N H +L+ N++ AVVK NAYG G +A AG Sbjct: 1 MISGRLRDTKLIVDLGAIKHNIHEQQKSLAPNSKILAVVKANAYGNGLVPVAQTAIKAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSK 114 V ++E ++LR + I VL I + + + S+ + Sbjct: 61 TGTCVAILDEALELRDSGITSLILVLGITPVENAHIAAEAGVSLTVGSLDWLEDYHQLAI 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 L +D+G R+G + E + + + +H A AD Sbjct: 121 ANHWTKPLKVHLGIDSGMGRIGFTTVESFNEAVKFVREHHEFEFEGMFTHFATADSADDS 180 Query: 174 VNSVQLERFRTLISHYKGIEASLA--SSSGILLGPN-YHFQLTRPGISLYGGTD---KIN 227 + Q+ ++ +S + + +S+ + R GIS+YG ++ Sbjct: 181 YFNKQVNKWEQFVSSLTELPPFVHMANSATGMWHREKITANTVRMGISMYGQNPSGRELA 240 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + +Q V I ++K AGE VSYG D +A IGYADGYP ++G Sbjct: 241 ATLDLQPVEQLVTSISFVKKLKAGESVSYGATYTAQEDEWLATLPIGYADGYPRCMTGY- 299 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKL 343 K + G I G++ MD M + + G + + G +I Sbjct: 300 -----------KVLVDGQFCDIAGRVCMDQMMIRLPKPYPV--GTQVVLMGRSGNKEITA 346 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFYT 370 +D+A + T NY+++ I R + YT Sbjct: 347 NDLADRADTINYEIMTNISNRVHRVYT 373 >gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855] gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855] Length = 821 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG N+ + T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQIINNVS--TLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|327193285|gb|EGE60191.1| alanine racemase protein [Rhizobium etli CNPAF512] Length = 377 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 195/365 (53%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ G + FFV E Sbjct: 23 LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V+LR A+IFVL G+ PG E ++ +IPV++S+ Q +S S P L Sbjct: 83 VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLTRSLPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG +E + + ++ I+SHLACAD+ S N QL + Sbjct: 143 QFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMARIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G + S A+S G+ LG YH L RPGI+LYGG ++PM+ VV + ++ R Sbjct: 203 DEFPGFDISFANSGGLFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 +G + YGG R++ +A A GYADG P +L G + KG Sbjct: 263 TVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD DIT + +G +++ GP+ L+DVA A+GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTISYEILTGLGDR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YDRQY 376 >gi|228907651|ref|ZP_04071508.1| Alanine racemase [Bacillus thuringiensis IBL 200] gi|228852143|gb|EEM96940.1| Alanine racemase [Bacillus thuringiensis IBL 200] Length = 340 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 155/350 (44%), Gaps = 24/350 (6%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 A VK N YG G +++ N+GV V S+EE +KLR QA I +L P Sbjct: 1 MATVKANGYGHGAVEVSKKAINSGVDYLAVASLEEAIKLRKSDIQAPILMLGYTPPSAAN 60 Query: 93 IIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + +L I + SK G ++VDTG RLGL +EA DF H Sbjct: 61 HVVYWDLTQSIFDIEHAEALSKSGQILGKKAKVHVKVDTGMGRLGLQAEEANDFIHIVSR 120 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGP 206 L + SH A AD+ Q R++ L+ + + +A+S+ + P Sbjct: 121 MDGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAATIEMP 180 Query: 207 NYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263 + + + R GIS+YG + ++ + + ++I I+ G VSYG Sbjct: 181 DMTYDMVRIGISMYGLYPSKEVNKTKVNLKQAIQLKTKVIYIQTLEKGYGVSYGATNIER 240 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 ++IA IGYADGY LSG I G + PI GKI MD M D+T Sbjct: 241 DKAIIATIPIGYADGYSRRLSGT-----------AYVLIHGQLAPIFGKICMDFCMIDVT 289 Query: 324 DSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D + +GD + ++G I LD+VA GT +Y++ +G R + Y Sbjct: 290 DIKGVNIGDEVVVYGGQGDYFISLDEVASMLGTISYEVACNLGQRVPRIY 339 >gi|291482873|dbj|BAI83948.1| D-alanine racemase [Bacillus subtilis subsp. natto BEST195] Length = 389 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 103/384 (26%), Positives = 166/384 (43%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R +IDL+A+K N +M G + AVVK NAYG G + A A +AG Sbjct: 1 MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR +A I VL + P I + ++ SV L ++ Sbjct: 61 ASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175 G + L+VDTG NRLG+ +E + ++ + + +H A AD+ Sbjct: 121 KKGY-LHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179 Query: 176 SVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 +Q ERF+ LI+ + A+S+ L F R GI +YG + S + Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADISDEIP 239 Query: 234 TVV----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + T + + ++ GE VSYG + +D+ I +GYADG+ L G D Sbjct: 240 FQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI- 298 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 +KG + I G+I MD M ++ G + + G I +D+ Sbjct: 299 -----------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + + Sbjct: 346 IAGRLETINYEVACTISSRVPRMF 369 >gi|153948196|ref|YP_001402718.1| alanine racemase [Yersinia pseudotuberculosis IP 31758] gi|152959691|gb|ABS47152.1| alanine racemase [Yersinia pseudotuberculosis IP 31758] Length = 359 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 167/367 (45%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + L+ +R AVVK NAYG G A L + + V + Sbjct: 4 ATAVIDRHALRHNLQQIRRLAPQSRLVAVVKANAYGHGLLAAAHTLQD--ADCYGVARIS 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + Sbjct: 62 EALMLRAGGIVKPILLLEGFFDAEDLPVLVANHIETAVHSLEQLVALEAARLSAPINAWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +A F S + + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPDQAEAFYQRLSACRNVIQPVNIMSHFSRADEPEVAATQQQLACFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARI 242 + G + S+A+S GIL P H RPGI LYG + + + +T ++ + Sbjct: 182 AAGKPG-KQSIAASGGILRWPQAHRDWVRPGIVLYGVSPFDAPYGRDFGLLPAMTLKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGESVGYGGTWVSERDTRLGVIAIGYGDGYPRSA-----------PSGTPVWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ + +VGD ++G ++ ++ VA +G + Y+L+ + Sbjct: 290 NGREVSIVGRVSMDMISIDLGPESTDKVGDEALMWGAELPVERVAACTGISAYELITNLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|313634120|gb|EFS00784.1| alanine racemase [Listeria seeligeri FSL N1-067] Length = 371 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 148/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID +A++ N L N AVVK NAYG G ++A AG + F V Sbjct: 9 HRPTWIEIDRSAIRENIKNEQKKLPKNVAVWAVVKANAYGHGIIEVAKTAKEAGAKGFCV 68 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + Sbjct: 69 AILDEALALREAGFQDDFILVLGATRKEDANLAAHNNI---SLTIFREDWLDGVHLETPL 125 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++D+G RLG+ +EA + L +H A AD + QL + Sbjct: 126 KVHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLAK 185 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 F ++ K + +S+ LL F R GIS+YG I N ++ Sbjct: 186 FDAILKGLKSRPRFVHAANSAAALLQSQIGFDAVRFGISMYGLAPSIEIKSNLPFKLKPA 245 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ ++K G+ VSYG T IA IGYADG SG Sbjct: 246 LALYTEMVHVKKLAPGDSVSYGATYTATEREWIATLPIGYADGLIRHYSGF--------- 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASG 351 + + G PI+G++ MD T+ + + G + I G + DD A Sbjct: 297 ---QVLVDGKKAPIIGRVCMDQTIIKLP--YEFQTGTKVTIIGMDHGNSVTADDAAKYLD 351 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 352 TINYEVTCLLTERIPRKY 369 >gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74] gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74] Length = 835 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 107/382 (28%), Positives = 165/382 (43%), Gaps = 33/382 (8%) Query: 9 LKIDLTALKNNWHSMNAL------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L+I+L AL +N + + +VK AYG G ++A L V V Sbjct: 461 LEINLDALTHNLNYYRERISRNDGPSETKIMVMVKAFAYGSGSAEVAQLLQFHRVDYLAV 520 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--- 119 +EGV LR I V+ P + + L P I S+ L + + + Sbjct: 521 AYADEGVSLRQNGVDLPIMVMNPA-PETFSTLLEYKLEPEIYSLRLLREWEEFLRSREHA 579 Query: 120 ------VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSS 172 ++P L++DTG +RLG +E T + ++ + SHL ADD + Sbjct: 580 FANTQSTTYPIHLKIDTGMHRLGFLERELTVVTDFLKRQPNLHVATVFSHLVGADDAQFN 639 Query: 173 HVNSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 + Q E F L +S+GI+ P+Y + R GI LYG Sbjct: 640 PFSRQQYETFLRCTEFLGAELGYMPTRHLLNSAGIVRFPDYKLDMVRLGIGLYGVEATGT 699 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + +QTV T + I+ AGE V Y + L D+ IA AIGYADGY L Sbjct: 700 EQSALQTVGTLRTIVSQIKTVGAGESVGYSRRGVLDHDARIATLAIGYADGYDRRLGNGV 759 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347 G ++ G P +G + MDMTM D+T++ S+ GD + IFGP++ + ++A Sbjct: 760 ----------GNVWVNGSYCPTVGSVCMDMTMIDVTNA-SVSEGDEVLIFGPELPITELA 808 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT Y++L + R + + Sbjct: 809 RRIGTIPYEILTGVSERVKRVF 830 >gi|182414552|ref|YP_001819618.1| alanine racemase [Opitutus terrae PB90-1] gi|177841766|gb|ACB76018.1| alanine racemase [Opitutus terrae PB90-1] Length = 382 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 94/377 (24%), Positives = 164/377 (43%), Gaps = 28/377 (7%) Query: 8 RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +IDL AL+ N + +L + R AVVK +AYG G + A L +AG F V ++ Sbjct: 13 WAEIDLAALERNLRLIRASLPAHMRYVAVVKADAYGHGLPQTAARLMHAGADLFAVATLA 72 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYA 125 E +R P + +L + P +++ + + +L +SS+ ++ + G Sbjct: 73 EAATVRELGPGWPVLLLSPLLPEEDRYLAEYDLTATVSSIEEVDRFEAAGRVAGRVISVH 132 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L++DTG RLG+ ++ + +L+ + +H A ++ + S Q RF Sbjct: 133 LKIDTGMGRLGVWHEQTASVYEHLARAPHLRLAGVFTHFAAPEE--AAFTSEQRRRFLAA 190 Query: 186 ISHYKGIEASL------ASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236 ++ +GI S+ + F R G+ +G N + V Sbjct: 191 LAACQGIPLDSIFVHADNSAGIETMSSATPFNAVRIGLLQFGILPHPNSLLSEVHTEPVF 250 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + R+ L++ AG +SYG L R + IA+ GY DG P +S Sbjct: 251 SFLTRVGLVKSLPAGYTISYGRTYTLGRPTRIAILCAGYGDGIPRAVSNR---------- 300 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352 + I+G P+LG++TMD T+ DITD+ + GD I G +I + + + + T Sbjct: 301 -AQVLIRGTRCPVLGRVTMDQTIVDITDAGDVRCGDEAVIVGRQDQAEISIAEFSTWADT 359 Query: 353 TNYDLLVRIGTRYAKFY 369 ++ L I R + Y Sbjct: 360 IPWETLCSITKRVPRVY 376 >gi|332163185|ref|YP_004299762.1| alanine racemase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603930|emb|CBY25428.1| alanine racemase, biosynthetic [Yersinia enterocolitica subsp. palearctica Y11] gi|325667415|gb|ADZ44059.1| alanine racemase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861935|emb|CBX72104.1| alanine racemase [Yersinia enterocolitica W22703] Length = 359 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 174/367 (47%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRIAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + ++ + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPILAANCIETAVHSIEQLEALEVAELSAPIHVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S K + Q I+SH + AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACKNVIQPVNIMSHFSRADEPQVDTTRQQLDCFDTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G + S+A+S GILL P H RPGI LYG + ++ + ++ + Sbjct: 182 AADKPG-KQSIAASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFELKPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGEPVGYGGTWVSERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 V I+G+++MDM D+ + + +VGD + ++G ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NDREVGIVGRVSMDMISVDLGPNATDKVGDEVLLWGAELPVEKIAACTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|260598252|ref|YP_003210823.1| alanine racemase [Cronobacter turicensis z3032] gi|260217429|emb|CBA31526.1| Alanine racemase, catabolic [Cronobacter turicensis z3032] Length = 356 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 22/368 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFV 62 + ++ +DL AL++N + + +R +VVK NAYG G +++ AL G F + Sbjct: 2 SRPIQASLDLQALRHNLEVVRRAAPRSRVWSVVKANAYGHGLDRVWSAL---GATDGFAM 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EE + LR + I +L G E +FD + Sbjct: 59 LNLEEAILLRERGWKGPILMLEGFFHADELPLFDKYRLTTSVHSNWQLKALAGAKLNAPL 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++++G NRLG + + +++H A AD P ++ Sbjct: 119 DVYLKINSGMNRLGFTPERVHSIWQQLKAIANVGQITLMAHFADADRPDGIDAAMVRI-- 176 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTA 238 + SL++S+ L P HF RPGI LYG + + +Q V+T Sbjct: 177 -EQAAEGIDAPRSLSNSAAALWHPQAHFDWVRPGIVLYGASPSGQWRDIATSGLQPVMTL 235 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++ II ++ G+ V YG + + + I + A GYADGYP G Sbjct: 236 KSEIIGVQTLKPGDTVGYGSRYRAMGEQRIGIVACGYADGYPRHA-----------PDGA 284 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G I+G ++MDM D+T +G ++++G +IK+DDVA A GT Y+L+ Sbjct: 285 PVLVDGVRTGIIGTVSMDMLTVDLTPCPQAGIGSPVELWGNEIKIDDVAAACGTVGYELM 344 Query: 359 VRIGTRYA 366 + R Sbjct: 345 CALAPRVP 352 >gi|229546693|ref|ZP_04435418.1| alanine racemase [Enterococcus faecalis TX1322] gi|229308178|gb|EEN74165.1| alanine racemase [Enterococcus faecalis TX1322] Length = 371 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSIVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|256959977|ref|ZP_05564148.1| alanine racemase [Enterococcus faecalis Merz96] gi|293383728|ref|ZP_06629635.1| alanine racemase [Enterococcus faecalis R712] gi|293388796|ref|ZP_06633289.1| alanine racemase [Enterococcus faecalis S613] gi|312907057|ref|ZP_07766053.1| alanine racemase [Enterococcus faecalis DAPTO 512] gi|312978687|ref|ZP_07790414.1| alanine racemase [Enterococcus faecalis DAPTO 516] gi|256950473|gb|EEU67105.1| alanine racemase [Enterococcus faecalis Merz96] gi|291078804|gb|EFE16168.1| alanine racemase [Enterococcus faecalis R712] gi|291081953|gb|EFE18916.1| alanine racemase [Enterococcus faecalis S613] gi|310627042|gb|EFQ10325.1| alanine racemase [Enterococcus faecalis DAPTO 512] gi|311288394|gb|EFQ66950.1| alanine racemase [Enterococcus faecalis DAPTO 516] Length = 371 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N + L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPKSNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLNPEETKQAVRFVQFHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|190894994|ref|YP_001985287.1| alanine racemase [Rhizobium etli CIAT 652] gi|190700655|gb|ACE94737.1| alanine racemase protein [Rhizobium etli CIAT 652] Length = 377 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 195/365 (53%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ G + FFV E Sbjct: 23 LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V+LR A+IFVL G+ PG E ++ +IPV++S+ Q +S S P L Sbjct: 83 VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLTRSLPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG +E + + ++ I+SHLACAD+ S N QL + Sbjct: 143 QFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMARIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G + S A+S G+ LG YH L RPGI+LYGG ++PM+ VV + ++ R Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 +G + YGG R++ +A A GYADG P +L G + KG Sbjct: 263 TVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD DIT + +G +++ GP+ L+DVA A+GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTISYEILTGLGDR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YDRQY 376 >gi|300870894|ref|YP_003785765.1| alanine racemase [Brachyspira pilosicoli 95/1000] gi|300688593|gb|ADK31264.1| alanine racemase [Brachyspira pilosicoli 95/1000] Length = 368 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 111/372 (29%), Positives = 183/372 (49%), Gaps = 23/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL AL+NN + +++GN + +VK NAYG G ++ L N V V +VEEG Sbjct: 7 AEIDLKALQNNIKIIRSMTGNTKLLTIVKANAYGHGIVDMSKQLENLNVDALGVATVEEG 66 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYALQ 127 VK+R + I VL+ + + + +L P+IS+ + L + ++ Sbjct: 67 VKIREAGVKIPIIVLFQHFKNEAEDVCRYDLTPIISNAECLDDYDRFLKNHNKKLKLHIK 126 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLERFRT 184 VDTG NR+G ++ L + + ++ I +H A + DD S Q++ F Sbjct: 127 VDTGLNRMGAKPKDVLSLANKILSYGTLEIEGINTHYAASDGFDDISKEFTENQIKIFTD 186 Query: 185 LISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 +++ K + +S+ +L N +F + R GI +YG T+K+ + ++ + Sbjct: 187 VLNELKTNGIKINNAHTANSAALLYYKNAYFDMVRAGIVVYGYTEKL-YDFGFKPILNLK 245 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++IL RK E VSYG K +D+ IAV IGYADG LS + Sbjct: 246 SKVILTRKIKKNETVSYGMTWKADKDTNIAVIPIGYADGLSRKLSN-----------NWE 294 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTTNYDL 357 I G PI+GKI MD+ M DI + +I+ D + IFG D + + +A + ++++ Sbjct: 295 VKINGKYYPIIGKICMDIIMADIGNEDNIKEEDEVLIFGDDERLNANTMAKKIESISHEV 354 Query: 358 LVRIGTRYAKFY 369 LVRIG R + Y Sbjct: 355 LVRIGERVKRVY 366 >gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4] gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4] Length = 821 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKAMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG N+ + T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPGAQFDMVRLGIGLYGIDPFTNQIINNVS--TLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|323526510|ref|YP_004228663.1| alanine racemase [Burkholderia sp. CCGE1001] gi|323383512|gb|ADX55603.1| alanine racemase [Burkholderia sp. CCGE1001] Length = 356 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 154/367 (41%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I +AL NN + ++ AVVK NAYG G + P L F + Sbjct: 3 RPLSATIHTSALANNLAVARRYAPRSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE VKLR I +L G P +I +L + S QL Sbjct: 61 LEEAVKLRELGWAGPILLLEGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + ++ + + +++H + AD + Q+E F Sbjct: 120 IQLKMNSGMNRLGYTPEKFRAAWERARACQGVGQITLMTHFSDADGERGI--AHQMEAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G SLA+S+ L P HF RPGI LYG + + +Q +T Sbjct: 178 RGAHGIAGAR-SLANSAATLWHPESHFDWVRPGIILYGASPSGVSAAIEGTGLQPAMTLA 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G+ V YG K I V A GYADGYP G Sbjct: 237 SELIAVQSVAEGDTVGYGSLFKARAPMRIGVVACGYADGYPR-----------VAPEGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+T + VG ++++G + +DDVA A GT Y+L+ Sbjct: 286 VIVDGVRTRIVGRVSMDMLTVDLTPIPTASVGSRVELWGTSLPIDDVARACGTIGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|5805088|emb|CAB53547.1| alanine racemase [Rhizobium leguminosarum bv. viciae] Length = 354 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 15/363 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ G + FFV E V+ Sbjct: 2 IDLAALGRNYRKLVSMLAPVRAGAVVKADAYGLGAERVARTLYSEGCRHFFVAQFVEAVR 61 Query: 71 LRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQV 128 LR A+IFVL G+ PG E + ++PV++S+ Q + + P LQ Sbjct: 62 LRPALAHDAQIFVLNGLQPGNEIACAEMGIVPVLNSLAQWRQWSAAARILKRCLPAVLQF 121 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG +RLG +E + + ++ I+SHLA ADD S N Q + Sbjct: 122 DTGMSRLGFPREERRELAAALRDGSNVEILFIMSHLASADDMGSEQNGEQFAEMSRIADE 181 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + G + S A+S G+ LG Y+ L RPGI+LYGG + +PM+ VV+ ++ R Sbjct: 182 FPGFDISFANSGGVFLGEAYYGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQTRTV 241 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 AG V YGG R++ +A A GYADG P LS G + KG +P Sbjct: 242 PAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLSDR-----------GAVYFKGVRLP 290 Query: 309 ILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 I+G+++MD T DIT + G +++ G L+D+A +GT +Y++L +G RY Sbjct: 291 IVGRVSMDSTTVDITALPEGALTFGSLVEVLGRHQTLEDIARDAGTISYEILTGLGDRYD 350 Query: 367 KFY 369 + Y Sbjct: 351 RQY 353 >gi|116493287|ref|YP_805022.1| alanine racemase [Pediococcus pentosaceus ATCC 25745] gi|122265249|sp|Q03DZ2|ALR_PEDPA RecName: Full=Alanine racemase gi|116103437|gb|ABJ68580.1| alanine racemase [Pediococcus pentosaceus ATCC 25745] Length = 374 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 89/378 (23%), Positives = 145/378 (38%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +L I+ A++NN ++ L G++ AVVK N YG G + A AG F V Sbjct: 6 HRPSKLVINAEAIRNNVKNEISRLDGHSELFAVVKANGYGHGIVETAQFTKQAGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR I VL GI + + N I + + + Sbjct: 66 AILDEALALRDAGLTETILVL-GITDVKYAKLAAENDISLTVGDQAWLDEATQILNQKPL 124 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +DTG R+G + + +H A AD+ + ++Q+ER Sbjct: 125 KVHLGIDTGMGRIGFQDGASFKKAADYLEQSQQFNFEGVFTHFATADEKDTTYFNLQVER 184 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F IS + +++ L + + R G+ +YG + +Q + Sbjct: 185 FNHFISQLTRRPRYVHVSNTATSLWHAACNGNMIRFGVGIYGMNPSGKTLESPFDLQPAM 244 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + E+ + + G +SYG D I IGYADGY L G Sbjct: 245 SLESELSFSKLVQKGRSISYGATYTAEEDEWIGTIPIGYADGYERRLQGF---------- 294 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 I G I+G+I MD M + S + G + + G I + D+A +GT Sbjct: 295 --HVLIDGQFCEIVGRICMDQMMVRLPKSYPV--GTKVILAGKSGEKSITMTDIAEYAGT 350 Query: 353 TNYDLLVRIGTRYAKFYT 370 NY++ R + YT Sbjct: 351 INYEITCGFTQRLPRIYT 368 >gi|206977042|ref|ZP_03237942.1| alanine racemase [Bacillus cereus H3081.97] gi|206744691|gb|EDZ56098.1| alanine racemase [Bacillus cereus H3081.97] Length = 389 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKGNAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AI YADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIAYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CKVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|116249082|ref|YP_764923.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841] gi|109940037|sp|Q9RAE7|ALR2_RHIL3 RecName: Full=Alanine racemase, catabolic gi|115253732|emb|CAK12125.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841] Length = 377 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 15/363 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ G + FFV E V+ Sbjct: 25 IDLAALGRNYRKLVSMLAPVRAGAVVKADAYGLGAERVARTLYSEGCRHFFVAQFVEAVR 84 Query: 71 LRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQV 128 LR A+IFVL G+ PG E + ++PV++S+ Q + + P LQ Sbjct: 85 LRPALAHDAQIFVLNGLQPGNEIACAEMGIVPVLNSLAQWRQWSAAARILKRCLPAVLQF 144 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG +RLG +E + + ++ I+SHLA ADD S N Q + Sbjct: 145 DTGMSRLGFPREERRELAAALRDGSNVEILFIMSHLASADDMGSEQNGEQFAEMSRIADE 204 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + G + S A+S G+ LG Y+ L RPGI+LYGG + +PM+ VV+ ++ R Sbjct: 205 FPGFDISFANSGGVFLGEAYYGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQTRTV 264 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 AG V YGG R++ +A A GYADG P LS G + KG +P Sbjct: 265 PAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLSDR-----------GAVYFKGVRLP 313 Query: 309 ILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 I+G+++MD T DIT + G +++ G L+D+A +GT +Y++L +G RY Sbjct: 314 IVGRVSMDSTTVDITALPEGALTFGSLVEVLGRHQTLEDIARDAGTISYEILTGLGDRYD 373 Query: 367 KFY 369 + Y Sbjct: 374 RQY 376 >gi|253999137|ref|YP_003051200.1| alanine racemase [Methylovorus sp. SIP3-4] gi|253985816|gb|ACT50673.1| alanine racemase [Methylovorus sp. SIP3-4] Length = 356 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 161/364 (44%), Gaps = 19/364 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L AL++N + + +ART AVVK N YG G +A L F V Sbjct: 2 RPITATIHLAALQHNLRRVRDYAPHARTMAVVKANGYGHGLLNVARGLAE--ADGFAVLR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E ++LR Q + +L G+ E + ++ + S V Sbjct: 60 LQEALELRAAGYQQTLLLLEGVFESTELNAAADAGVSIVVHAEHQIAMLEQASLPVPIAV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++++TG NRLG Q +++H A AD+ +++Q RF Sbjct: 120 FVKMNTGMNRLGFVPQAFASAVARLAACPQVSSITLMTHFATADEAPGIASALQ--RFEA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEAR 241 + + SLA+S+ IL P H RPGI LYG T +Q V+ ++ Sbjct: 178 GAAGMQ-YPKSLANSAAILRHPESHADWVRPGIMLYGATPVQSVTAAHFGLQAVMHLQSE 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I ++ GE + YG R++ + + A GYADGYP G G Sbjct: 237 LIAVQTLPPGESLGYGATFVAERETRVGIVACGYADGYPRHAPG-----------GTPIA 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + LG+++MDM DITD + ++G ++++G I +D VA A GT Y+LL + Sbjct: 286 VAGQVSKTLGRVSMDMLFVDITDIPAADIGSPVELWGATIPVDAVAEACGTVGYELLCAV 345 Query: 362 GTRY 365 +R Sbjct: 346 TSRV 349 >gi|330721327|gb|EGG99406.1| Alanine racemase2C catabolic [gamma proteobacterium IMCC2047] Length = 334 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 151/340 (44%), Gaps = 15/340 (4%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 A++K +AYG G E+ A AL N+ V ++E + LR I +L G +E Sbjct: 1 MAMLKADAYGHGAEQAALAL-NSYTDAIAVAFIDEAIALREAGINKPITLLQGTFDEREI 59 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 + + ++ + + G L+ D+G +RLG S E + Sbjct: 60 ELACQYTLDLVVLHGEQAEMLEAADPGCQLTVWLKFDSGMHRLGFSADEYAYWYERLSKH 119 Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212 +++H +CAD+P + V Q F SLA+S+ I+ P+ Sbjct: 120 PNVAEVRLMTHFSCADEPENPVTKEQEALFDKKTKGLSCTTYSLANSAAIMAWPSTLRDW 179 Query: 213 TRPGISLYGGTDKINK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 RPG+ LYG + ++ V+T + II R AGE V YG + I Sbjct: 180 VRPGVMLYGVCPFADWRENHRDLRPVMTLKTVIISTRTLEAGEAVGYGRSWVASEKCRIG 239 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329 VA+IGYADGYP L G + G V ++G++TMDM D+T ++ Sbjct: 240 VASIGYADGYPRCLPN-----------GTPVLVNGQRVSMVGRVTMDMITLDLTGVADVK 288 Query: 330 VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 VGD + ++G + ++++A +GT Y+LL + R + Y Sbjct: 289 VGDEVTLWGEGLAVEEIAEYAGTIAYELLTGVSKRVPRIY 328 >gi|315029851|gb|EFT41783.1| alanine racemase [Enterococcus faecalis TX4000] Length = 371 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 149/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I +IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVSIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|325845425|ref|ZP_08168718.1| alanine racemase [Turicibacter sp. HGF1] gi|325488531|gb|EGC90947.1| alanine racemase [Turicibacter sp. HGF1] Length = 380 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 148/375 (39%), Gaps = 21/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++DL A+ N + L N + AVVK N YG G +++ AGV + Sbjct: 1 MSFYRDTWAEVDLDAIVYNVQQIKKLHPNKKIFAVVKANGYGHGDVEVSRVALLAGVTNL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ ++E + LR +A I VL I N+ ++ + Sbjct: 61 AVSGLDEALGLRKAGIEAPILVLGMTRLKDVSIAAQYNIALTAHDECWISKL-VELPLET 119 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++D+G +RLGL+ +E + T + D + Q++ Sbjct: 120 PVKVHLKIDSGMHRLGLTTKEKVKETFELLKAAPKVELEGVFTHMATADCDADYLEYQIK 179 Query: 181 RFRTLISHYK--GIEASLASSSGILLGPNYHFQL-TRPGISLYGGTD---KINKSHPMQT 234 F +LI I+ ++ LL + F R G+ LYG I ++ Sbjct: 180 TFESLIEDLDLSSIKYVHIENTATLLQREFEFDHAIRLGLGLYGINPDAKFIPLEFDLKP 239 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ++I +++ G+ V YG D I V IGYADG+ G + Sbjct: 240 ALKLYSKITQVKRINKGDKVGYGATYTAENDEWIGVVPIGYADGWIRAHQGRN------- 292 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 ++G I+G++ MD M + +E+G + + G + ++ VA GT + Sbjct: 293 -----VIVEGKECEIIGRVCMDQLMIRLPH--EVEMGTMVTLIGDGMPVERVADEIGTIS 345 Query: 355 YDLLVRIGTRYAKFY 369 Y++L + R + Y Sbjct: 346 YEILCMLSDRVPRVY 360 >gi|206972274|ref|ZP_03233221.1| alanine racemase [Bacillus cereus AH1134] gi|229067995|ref|ZP_04201308.1| Alanine racemase [Bacillus cereus F65185] gi|229077594|ref|ZP_04210234.1| Alanine racemase [Bacillus cereus Rock4-2] gi|229176832|ref|ZP_04304233.1| Alanine racemase [Bacillus cereus 172560W] gi|206732848|gb|EDZ50023.1| alanine racemase [Bacillus cereus AH1134] gi|228606640|gb|EEK64060.1| Alanine racemase [Bacillus cereus 172560W] gi|228705713|gb|EEL58059.1| Alanine racemase [Bacillus cereus Rock4-2] gi|228715133|gb|EEL66996.1| Alanine racemase [Bacillus cereus F65185] Length = 389 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|269214143|ref|ZP_05983692.2| alanine racemase [Neisseria cinerea ATCC 14685] gi|269144442|gb|EEZ70860.1| alanine racemase [Neisseria cinerea ATCC 14685] Length = 422 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 NEF+R ++I L L++N+ + + G + AVVK +AYG G + A AL + Sbjct: 67 RNEFMRPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 124 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +++EG+KLR I +L G+ E + + Sbjct: 125 FAVATIDEGIKLRESGITNPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWK 184 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +R G + + + SH +CAD+P S + +Q+ Sbjct: 185 KPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQM 244 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E F +G E SLA+S+ IL P R G++LYG + ++ V+ Sbjct: 245 EAFDLGTKGLEGEE-SLANSAAILNIPEARRNWGRAGLALYGISPFGGSDDRLKPVMRLS 303 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 RI R + YG ++ + + + A GYADGYP Sbjct: 304 TRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PTNTP 352 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ Sbjct: 353 VAVDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMC 411 Query: 360 RIGTRYAKFY 369 I R Y Sbjct: 412 NI-KRAKFTY 420 >gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA] gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA] Length = 821 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 149/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL +N + L + +VK +AYG G +IA L + V V +E Sbjct: 463 LEINLNALVDNLNYYRSKLKSETKMVCMVKASAYGAGSYEIAKTLQDHRVDYLAVAVADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR I ++ K +FD L P + S L K + P Sbjct: 523 GSDLRKAGITCSIMIMNPELTA-FKTMFDYKLEPEVYSFHLLNELIKAAEKEGVTNFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + +E + + + SHL +D Q+E F Sbjct: 582 IKLDTGMHRLGFAPEEIPELIDRLKKQTAVIPRSVFSHLVGSDGAQFDSFTRRQIEMFEA 641 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P+ F + R GI LYG N+ + T + Sbjct: 642 ASECLQEAFQHKILRHICNTAGIERYPDAQFDMVRLGIGLYGIDPFTNQIINNVS--TLK 699 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I + E V Y + L RDS IA IGYADG L Sbjct: 700 TTILQIHEVPKEETVGYSRKGHLERDSRIAAIPIGYADGLNRRLGNGH----------AY 749 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD IFG D+ + ++ T Y++L Sbjct: 750 CLVNGQKASYVGNICMDVCMIDVTDI-DCKEGDKAIIFGDDLPVTVLSEILETIPYEILT 808 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 809 SVSNRVKRVY 818 >gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6] gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6] Length = 845 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 107/376 (28%), Positives = 159/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L+IDL AL N + AL+G AV+K +AYG G + A A AG + V Sbjct: 480 DRPTWLRIDLDALAANVRHLRALAG-VPLMAVLKADAYGHGAIRAARAALGAGAEALAVA 538 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 ++ E LR + ARI +L P Q L + S+ G Sbjct: 539 TLGEARTLRAHGIAARILLLGYTPPWQADETVRLGLDCTLFDHDSALALSRAAQSAGRPV 598 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG RLGL E F ++ + +H A AD+ QLERF Sbjct: 599 RVHIKVDTGMARLGLVHSEVGPFLTVLHQLPGLEIHGLYTHFASADEADLRAAQAQLERF 658 Query: 183 RTLISH--YKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTV 235 L++ G+ L +S+ L P F + RPGI+ YG + P + V Sbjct: 659 NHLLADLVAAGLRPPLVHAANSAATLRLPAARFDMVRPGIACYGLNPSPHTPLPPGFRPV 718 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ + + +R+ AG VSYGG T+ + IA GYADG Sbjct: 719 LSFHSEVAQVRELPAGTPVSYGGTYVTTQPTRIATIPAGYADGIRRA------------P 766 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 I G P++G+I MD TM D++ + GD + + G +I D+VA G Sbjct: 767 PWQSVLIAGQRAPVVGRICMDYTMVDVSHIPGVRRGDAVVLIGRQGADEISADEVAEWLG 826 Query: 352 TTNYDLLVRIGTRYAK 367 T +Y++L I R + Sbjct: 827 TISYEVLTSILPRVPR 842 >gi|315149610|gb|EFT93626.1| alanine racemase [Enterococcus faecalis TX0012] Length = 371 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVETAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 T ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 TLLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGSVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|229101047|ref|ZP_04231827.1| Alanine racemase [Bacillus cereus Rock3-28] gi|228682367|gb|EEL36464.1| Alanine racemase [Bacillus cereus Rock3-28] Length = 389 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEASFYRDTWVEVDLDAIYNNITHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 NGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVDGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|302553591|ref|ZP_07305933.1| alanine racemase [Streptomyces viridochromogenes DSM 40736] gi|302471209|gb|EFL34302.1| alanine racemase [Streptomyces viridochromogenes DSM 40736] Length = 390 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 105/382 (27%), Positives = 163/382 (42%), Gaps = 30/382 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N ++ A + A AVVK AYG G + A A AG + Sbjct: 16 RARAEIDLAALRANVRALRAHAPGAALMAVVKSEAYGHGAVQCARAAVAAGADWLGTATP 75 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 EE + LR RI G + + +L +S + + G Sbjct: 76 EEALALRAAGLPGRIMCWLWTPGGPWREAIEADLDVSVSGMWALDEVTAAARLAGRPARV 135 Query: 125 ALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+ DTG R G E + + + L +++ + SH ACAD+P + Q+ Sbjct: 136 QLKADTGLGRNGCQPGDDWAELVREALRAEAEGLLRVTGLWSHFACADEPGHPSIAAQIG 195 Query: 181 RFRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231 FR ++ + +GI +A+S L P HF L R GI+LYG + Sbjct: 196 LFREMVGHAEQQGIRPEVRHIANSPATLTVPESHFDLVRTGIALYGISPSPELGTPADFG 255 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V+T A + L++ G VSYG Q ++ + + +GYADG P S Sbjct: 256 LRPVMTLSASLALVKHVPGGHGVSYGHQYVTPGETTLGLVPLGYADGIPRHAS------- 308 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 G ++G I G++ MD + D+ E G +FGP + +D A Sbjct: 309 ----SAGPVLVEGKWRTIAGRVAMDQFVVDLGGDEP-EAGAEAVLFGPGDRGEPTAEDWA 363 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 A+GT Y+++ RIGTR + Y Sbjct: 364 QAAGTIAYEVVTRIGTRVPRVY 385 >gi|161723116|ref|YP_439909.2| alanine racemase [Burkholderia thailandensis E264] gi|167616568|ref|ZP_02385199.1| alanine racemase [Burkholderia thailandensis Bt4] gi|257143071|ref|ZP_05591333.1| alanine racemase [Burkholderia thailandensis E264] Length = 374 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 158/366 (43%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + N+R +VVK NAYG G E++ PAL + + Sbjct: 3 RPIVARIHPDAIAHNLAIVRQKAPNSRVWSVVKANAYGHGIERVYPALAD--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRALGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKLLTSAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG D + ++ H A ADD Q+ F Sbjct: 121 QLKMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMMHFANADDGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG + R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYPRHA-----------PSGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|229094951|ref|ZP_04225953.1| Alanine racemase [Bacillus cereus Rock3-29] gi|229113905|ref|ZP_04243337.1| Alanine racemase [Bacillus cereus Rock1-3] gi|228669546|gb|EEL24956.1| Alanine racemase [Bacillus cereus Rock1-3] gi|228688464|gb|EEL42340.1| Alanine racemase [Bacillus cereus Rock3-29] Length = 389 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEASFYRDTWVEVDLDAIYNNITHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDINVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVDGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|266620460|ref|ZP_06113395.1| alanine racemase [Clostridium hathewayi DSM 13479] gi|288867938|gb|EFD00237.1| alanine racemase [Clostridium hathewayi DSM 13479] Length = 394 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 158/382 (41%), Gaps = 29/382 (7%) Query: 5 EFLRL--KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R+ ++L A++ N +M A L VVK + YG G +A + V + Sbjct: 3 RYSRVYETVNLDAIRQNMEAMRANLKEGTGMIGVVKADGYGHGSVPVA-CAIDPYVSGYA 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120 + EE V LR + I +L + + L P + + G Sbjct: 62 TATPEEAVILRRHGITKPILILGVSPESSFEDLIRYELRPAVFRYESAARLSELSVKAGK 121 Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P + +DTG +R+G + A + T ++ + +H A AD+ + Q+ Sbjct: 122 ISPIHIALDTGMSRIGYPVTAAAAEETVRISRLPGIRIEGLFTHFARADERDKGATARQM 181 Query: 180 ERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHP 231 E F IS ++S+GIL P +F R GIS+YG + Sbjct: 182 ELFTEFISMLTERGITIPVLHCSNSAGILELPQANFNAVRAGISIYGLYPSDEVEKEPVH 241 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + + ++ I ++ G VSYGG R + IA +GY DGYP +LSG Sbjct: 242 LTPAMELKSTISYLKTIAPGTPVSYGGTFTAERKTAIATIPVGYGDGYPRSLSGR----- 296 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 G I+G ILG++ MD M D T+ E GD + + G +I ++++A Sbjct: 297 ------GDVLIRGRRARILGRVCMDQLMVDTTEIPEAEEGDEVTLIGKDGDEEITVEELA 350 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 G +Y++L IG R + Y Sbjct: 351 RIGGGFHYEILCDIGKRVPRVY 372 >gi|290892923|ref|ZP_06555913.1| alanine racemase [Listeria monocytogenes FSL J2-071] gi|290557499|gb|EFD91023.1| alanine racemase [Listeria monocytogenes FSL J2-071] Length = 368 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLEDLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ ++EA + QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNTITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|253576997|ref|ZP_04854320.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843607|gb|EES71632.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14] Length = 392 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 159/384 (41%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +IDL AL++N+ + + + A VK NAYG G +A L G V Sbjct: 6 RPTHAEIDLDALRSNFEELRRRQQDMKMLACVKANAYGHGAVPVAKELEQIGADYLSVAF 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS--KLMSCGVSH 122 ++E ++LR Q I VL P + ++ ++ + S L Sbjct: 66 LDEALELRKAGIQLPILVLGYTPPHGVRTAWEHDVTLNVFSNEVLEAIEALNPAEFPHKL 125 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++D+G R+GL EA+ F + ++ + +H A AD+ Q R Sbjct: 126 KVHIKIDSGMGRVGLLPGDEAVAFVRKAMQVPHVEVEGLFTHYATADEEDKSYTLEQYRR 185 Query: 182 FRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 F+ ++ + + +S+ + P Q+ R GI+LYG + Sbjct: 186 FQGVVEALREHNIRIPIIHTGNSAIAIDMPELSVQMVRIGIALYGLYPSDEVRRDQVKLT 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ + + ++ A +SYG + ++ IA IGYADGY L+G Sbjct: 246 PVLSLKTETVRVKTLPAHSAISYGARYITEQEERIATLPIGYADGYSRMLNG-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIF----GPDIKLDD 345 + I+G VP+ G I MD M + ++ I+ G+ + + G +I + Sbjct: 298 ---KAQVLIRGRRVPVTGVICMDQCMVSLQALAEEAEEIQAGEEVVLIGRQAGEEITAGE 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A A GT +Y+L+ + R + Y Sbjct: 355 LASAMGTIHYELICMLAHRVPRVY 378 >gi|91775684|ref|YP_545440.1| alanine racemase [Methylobacillus flagellatus KT] gi|122985541|sp|Q1H1N8|ALR_METFK RecName: Full=Alanine racemase gi|91709671|gb|ABE49599.1| alanine racemase [Methylobacillus flagellatus KT] Length = 357 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 168/366 (45%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 IDL AL++N + + + +R AVVK +AYG G ++AP L F V Sbjct: 2 RATTATIDLGALRHNLNLVRQRAPGSRVLAVVKADAYGHGLLRVAPGLAE--ADGFGVLR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCG-VSH 122 +EE + LR + R+ +L GI E + I V+ + QL + + + Sbjct: 60 LEEALALREAGYRQRLLLLEGIFSMDELGAAAQHGISVVVHNAQQLAMFEAMAAASVKPI 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++++G NRLG Q + +++H A AD+ + QL+ F Sbjct: 120 SVFLKMNSGMNRLGFKSQAYKQALQRLEACPVVADVSLMTHFATADEERGI--ADQLKEF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239 + + + SLA+S+ IL P H RPGI LYG + S ++ + Sbjct: 178 DAVTAGWHH-PVSLANSAAILRFPEAHRDWVRPGIILYGASPVSGVSAASFGLRPAMRFT 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ AG+++ YG + T+ + +A+ A GYADGYP G Sbjct: 237 SEVIAVQTLEAGDILGYGARFTATQATRVAIVACGYADGYPRHAPN-----------GTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G+ LG+++MDM DI+ +VG ++++G + +D VA A+GT Y+LL Sbjct: 286 IAIDGHRTQTLGRVSMDMLFADISQLPDADVGSQVELWGEVVPVDAVAEAAGTVGYELLC 345 Query: 360 RIGTRY 365 + R Sbjct: 346 AVAPRV 351 >gi|210621786|ref|ZP_03292815.1| hypothetical protein CLOHIR_00760 [Clostridium hiranonis DSM 13275] gi|210154550|gb|EEA85556.1| hypothetical protein CLOHIR_00760 [Clostridium hiranonis DSM 13275] Length = 388 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 166/375 (44%), Gaps = 24/375 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +IDL A K N S+ L+ + +VK +AYG G +IA L V+ V+ Sbjct: 11 AWAEIDLDAFKRNLKSIRKVLNNGEKICGIVKADAYGHGSVEIAKTLEENDVEYLAVSRA 70 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124 EE ++LR + I +L + + I +++ I S+ ++ + Sbjct: 71 EEAMELRRKGLELPILILGYTPEQRYRDIIRNDVMFTIYSMEDAVKLNEAAEELEMDAKV 130 Query: 125 ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +++DTG NRLG + +E++ + I +H A AD+ +Q E+F+ Sbjct: 131 HIKIDTGMNRLGFKVTEESICEIKKISEMDRISIKGIFTHFAAADEVDKSFTEMQGEKFK 190 Query: 184 TLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTV 235 +++ +G+E L +S+ I+ + F + R GI +YG + + P++ V Sbjct: 191 YMLNRLKEEGVEVPLVHAANSAAIVDCDDLKFDMVRAGIIMYGCYPSDDIMKERVPVEPV 250 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + R+ I+ GE +SYG + IA AIGYADG+ Sbjct: 251 MTIKTRVSHIKTIEPGEKISYGCTYEAKEKERIATLAIGYADGFVRGRKNP--------- 301 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTN 354 K I G ++G+I MD M I I+VGD +FG + + + A GT + Sbjct: 302 ---KVCINGKDYEVVGRICMDQCMIKIGMDDDIKVGDEAVVFGKGGVSISEFAEDCGTIS 358 Query: 355 YDLLVRIGTRYAKFY 369 ++++ I R + + Sbjct: 359 HEIMCNISRRIPRVF 373 >gi|319405446|emb|CBI79065.1| Alanine racemase [Bartonella sp. AR 15-3] Length = 373 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 188/354 (53%), Gaps = 15/354 (4%) Query: 20 WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79 + ++ +AVVK +AYGLG EK+APALY AG + FF+ ++E ++L+ PQ Sbjct: 30 YKTLVQRVAPIECSAVVKADAYGLGAEKVAPALYQAGCRTFFIAHLKEALQLKAILPQNI 89 Query: 80 IFV-LYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDTGFNRLGL 137 V L G+ P E++I ++PV++S ++ + G P +Q+DT NRLGL Sbjct: 90 TLVLLNGLPPNAEELITKAGIVPVLNSRHEIENWQMHCQKNGKKFPAIIQIDTNMNRLGL 149 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 +E N + + IISHLA DD + N Q +T ++ +ASLA Sbjct: 150 DQEELKWLIQNPTLFERIDIKYIISHLANGDDVTHASNCAQKNAMKTALAQLPACKASLA 209 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +S GI LGP+++F L RPGI+LYG +++V+ +A++I R AG V YG Sbjct: 210 NSGGIFLGPDFYFDLVRPGIALYGIDPHKKHPTSLKSVLKLKAQVIQSRYTEAGSPVGYG 269 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 G + S++ AIGYADG+ LS G + K + +PI+G+I+MD Sbjct: 270 GSFITQKPSILTTIAIGYADGWLRNLSN-----------KGFVYFKKHKLPIIGQISMDS 318 Query: 318 TMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D T+ + GD++++ G +++VA +GT Y++L +G+RY + Y Sbjct: 319 ITVDATNLKHEKPKRGDWVELIGRHQTIENVAADAGTIPYEILTSLGSRYKRIY 372 >gi|229159406|ref|ZP_04287426.1| Alanine racemase [Bacillus cereus R309803] gi|228624073|gb|EEK80879.1| Alanine racemase [Bacillus cereus R309803] Length = 389 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNITHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRVGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ R+ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTRVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTRVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|37526452|ref|NP_929796.1| alanine racemase, catabolic [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785883|emb|CAE14934.1| Alanine racemase, catabolic [Photorhabdus luminescens subsp. laumondii TTO1] Length = 362 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 156/367 (42%), Gaps = 19/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L AL+NN + GN++ AVVK NAYG G I +L F + Sbjct: 3 RPISATIHLDALENNLAIIRNKVGNSKIWAVVKANAYGHGLHCIWRSLDQ--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 E + LR Q I +L G P II + L V+ S QL + Sbjct: 61 FHEAILLREQGWQGAILLLEGFFKPEDLPIIDEYQLTTVVHSHWQLEAIEA-ANLSKPIN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + + ++SH A AD + ++ + Sbjct: 120 IYLKLNSGMNRLGFPADQYSAVLSLARGIRQIGQITLMSHFANADKDNKEISVTEQLNVI 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 +S I LA+S+ L P H RPGI LYG + ++ V++ + Sbjct: 180 HSVSQGLDISQCLANSAASLWYPQTHRDWVRPGIVLYGASPSGKWKDIADIGLKAVMSLQ 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I+ AG+ + YG + + A GYADGYP G Sbjct: 240 SEIIAIQNLKAGDKIGYGSEYTAPGPMRVGTVACGYADGYPR-----------CAMTGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +LG ++MDM D+T ++G ++++G ++ +DDVA +SGT Y+LL Sbjct: 289 IIVDGVRTQVLGTVSMDMLSVDLTPCPQAQIGSPVELWGQNLPVDDVAESSGTIGYELLC 348 Query: 360 RIGTRYA 366 + R Sbjct: 349 ALANRVP 355 >gi|228950772|ref|ZP_04112901.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|89475552|gb|ABD73308.1| alanine racemase [Bacillus thuringiensis serovar kurstaki] gi|228808912|gb|EEM55402.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 389 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKAEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|83651967|gb|ABC36031.1| alanine racemase [Burkholderia thailandensis E264] Length = 386 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 158/366 (43%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + N+R +VVK NAYG G E++ PAL + + Sbjct: 15 RPIVARIHPDAIAHNLAIVRQKAPNSRVWSVVKANAYGHGIERVYPALAD--ADGIALLD 72 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 73 LDEAVRVRALGWTKPVLLLEGIFDAADIEIADRHRLTVAVHGDEQLKLLTSAKTTRPIDI 132 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG D + ++ H A ADD Q+ F Sbjct: 133 QLKMNSGMNRLGYRPSAFRDAWERAAAAPSIGRIALMMHFANADDGE---IDWQMSVFDA 189 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 190 ATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGATRHVADVPLRAAMTLTS 248 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG + R+ I V A GYADGYP G Sbjct: 249 RIIGVQTLSPGETVGYGRRFAAEREMRIGVVACGYADGYPRHA-----------PSGTPI 297 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T VG ++++G +++DDVA A+GT Y+L+ Sbjct: 298 AVDGVLTRVVGRVSMDMLTVDLTPCPHAGVGSTVELWGKQVRVDDVAEAAGTIGYELMCA 357 Query: 361 IGTRYA 366 + R Sbjct: 358 LARRVP 363 >gi|229028090|ref|ZP_04184240.1| Alanine racemase [Bacillus cereus AH1271] gi|228733224|gb|EEL84056.1| Alanine racemase [Bacillus cereus AH1271] Length = 389 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNITHIKNFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSIMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|238764111|ref|ZP_04625065.1| Alanine racemase 1 [Yersinia kristensenii ATCC 33638] gi|238697648|gb|EEP90411.1| Alanine racemase 1 [Yersinia kristensenii ATCC 33638] Length = 359 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 18/367 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G + A L + + V + Sbjct: 4 ATAVIDRRALRHNLQQVRRMAPQSRLIAVVKANAYGHGLLETAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPVLVANRIETAVHSIEQLEALEAANLSAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S + + Q I+SH + AD+P QL+ F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACRNIIQPVNIMSHFSRADEPLVDTTRQQLDCFDTF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARI 242 + G + S+++S GILL P H RPGI LYG + + + ++ + Sbjct: 182 AADKPG-KQSISASGGILLWPEAHRDWVRPGIILYGVSPMDEPYASHFDLLPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G ++ Sbjct: 241 IAVREHKAGEPVGYGGTWISERDTRLGVVAIGYGDGYPRSA-----------PSGTPMWL 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V I+G+++MDM D+ +VGD + ++G ++ ++ +A +G + Y+L+ ++ Sbjct: 290 NGREVGIVGRVSMDMISVDLGPEAIDKVGDEVLLWGAELPVEKIAARTGISAYELITKLT 349 Query: 363 TRYAKFY 369 +R A Y Sbjct: 350 SRVAMEY 356 >gi|299538299|ref|ZP_07051584.1| alanine racemase [Lysinibacillus fusiformis ZC1] gi|298726501|gb|EFI67091.1| alanine racemase [Lysinibacillus fusiformis ZC1] Length = 373 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 31/386 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + +F R IDL A++ N ++ L N + AVVK NAYG G +A A AG Sbjct: 1 MKTQQFFRPTKAIIDLQAIQQNVKNLKEFLRPNVQIIAVVKANAYGHGDVAVARAALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V + +E + +R + + I +L +I + + + L+ Sbjct: 61 ATVLAVATPDEALHIRAHFEEPDILILGASPVSFAPYAAQQRIILTAFADDWMQQAASLL 120 Query: 117 -SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + +++D+G R+G+ QE L+ + + +L I +H A AD+ + Sbjct: 121 VDEALPLRLHIKIDSGMGRIGIRSEQELLELYQTIQSTENMELDGIFTHFATADEEDTLH 180 Query: 175 NSVQLERFRTLISHYKGIEASLASS---SGILLGPNYHFQLTRPGISLYGGTDKI----N 227 Q++ F ++ + +S + ++ P+ + R GIS+YG + Sbjct: 181 FDQQVQFFEKCLAVIPNKPRLVHASNTAASLVKDPHLQYDAVRFGISMYGLSPSAYVTSI 240 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 P+ + E+ ++ +++ +G+ V YG D I IGYADG L G Sbjct: 241 LPFPLLPAFSLESELVHVKQIKSGDSVGYGAIYVAPTDMWIGTIPIGYADGVIRKLGGQ- 299 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 + I G +PI+G+I MD M + + +G+ + + G + + Sbjct: 300 -----------EVLIDGQRMPIVGRICMDQCMVALPKAYD--IGEKVTLIGRQGNTGVSI 346 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 D+ A T NY++ I TR + Y Sbjct: 347 DEWATKLETINYEIPCIITTRVPRIY 372 >gi|227112420|ref|ZP_03826076.1| alanine racemase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 360 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 173/374 (46%), Gaps = 23/374 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + I+ AL++N + L+ ++ A+VK NAYG G A + + Sbjct: 1 MKT---ATAVINRRALRHNLQRIRQLAPGSQVVAIVKANAYGHGMIDAAHTFSD--ADCY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E + LR I +L G + ++ + L + S QL + ++ Sbjct: 56 GVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQLAALEQ-VTLP 114 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P +++D+G +RLG+ + A F + + + Q I+SH AD+P + Q Sbjct: 115 QPIPVWMKLDSGMHRLGVLPEHADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQ 174 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 L F G + S+A+S GILL P H RPGI LYG + N+ Q Sbjct: 175 LACFDAFTQGKPGAQ-SIAASGGILLWPQSHRDRVRPGIILYGVSPLDNEDAAHFGFQPA 233 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + +I +R+ AGE V YGG R++ + V A+GY DGYP Sbjct: 234 MTFTSHLIAVREHNAGEAVGYGGTWTSPRNTRLGVVAVGYGDGYPR-----------CAP 282 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G I G VP+ G+++MDM D+ + +VGD + ++GP + ++ +A +G + Y Sbjct: 283 AGTPVLINGREVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGPTLPVERIAAHTGASAY 342 Query: 356 DLLVRIGTRYAKFY 369 +L+ R+ R A Y Sbjct: 343 ELITRLTQRTALEY 356 >gi|222153645|ref|YP_002562822.1| alanine racemase [Streptococcus uberis 0140J] gi|254802390|sp|B9DVI3|ALR_STRU0 RecName: Full=Alanine racemase gi|222114458|emb|CAR43287.1| alanine racemase [Streptococcus uberis 0140J] Length = 368 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 165/381 (43%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +DL A+++N ++ +S +T AVVK NAYG G ++A A+ V Sbjct: 1 MISSLHRPTVATVDLQAIRDNIKAVQEHISSTTKTFAVVKANAYGHGAIQVAKAVDEE-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L I + + + ++ ++S L Sbjct: 60 DAFCVSNLDEALELRQAGIEKDILILGVILANEIPLAIEHSITITVASNEWLESAKACQK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ E + K + I +H A AD+ ++ Sbjct: 120 DLAQLHVHVKVDSGMGRIGVRSLEEANQLIAGLTKSGAHVDGIFTHFATADEENTDKFHQ 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L++ ++S+ L + F R GI +YG +N +P+ Sbjct: 180 QLAFFTDLVNALAIKPELVHASNSATSLWHSDTIFNAVRLGIVIYGLNPSGKTLNLPYPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ +R++ I+K AG V YG + + IGYADG+ + G Sbjct: 240 KPALSLSSRLVHIKKIKAGNTVGYGATYTAKTEEYVGTLPIGYADGWTRDMQGYS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 I G++ I+G+++MD + + +G + + G + I D+A Sbjct: 295 -------VIIDGHLCEIIGRVSMDQLTVRLPKAFD--IGQEVTLIGQEGHQMISATDIAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCLLSDRIPRHY 366 >gi|30018501|ref|NP_830132.1| alanine racemase [Bacillus cereus ATCC 14579] gi|218233448|ref|YP_002365079.1| alanine racemase [Bacillus cereus B4264] gi|228956674|ref|ZP_04118465.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041138|ref|ZP_04189897.1| Alanine racemase [Bacillus cereus AH676] gi|229107913|ref|ZP_04237544.1| Alanine racemase [Bacillus cereus Rock1-15] gi|229125746|ref|ZP_04254775.1| Alanine racemase [Bacillus cereus BDRD-Cer4] gi|229143037|ref|ZP_04271474.1| Alanine racemase [Bacillus cereus BDRD-ST24] gi|229148639|ref|ZP_04276893.1| Alanine racemase [Bacillus cereus m1550] gi|29894041|gb|AAP07333.1| Alanine racemase [Bacillus cereus ATCC 14579] gi|218161405|gb|ACK61397.1| alanine racemase [Bacillus cereus B4264] gi|228634897|gb|EEK91472.1| Alanine racemase [Bacillus cereus m1550] gi|228640426|gb|EEK96819.1| Alanine racemase [Bacillus cereus BDRD-ST24] gi|228657719|gb|EEL13528.1| Alanine racemase [Bacillus cereus BDRD-Cer4] gi|228675536|gb|EEL30749.1| Alanine racemase [Bacillus cereus Rock1-15] gi|228727200|gb|EEL78398.1| Alanine racemase [Bacillus cereus AH676] gi|228803012|gb|EEM49839.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 389 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|83311194|ref|YP_421458.1| alanine racemase [Magnetospirillum magneticum AMB-1] gi|82946035|dbj|BAE50899.1| Alanine racemase [Magnetospirillum magneticum AMB-1] Length = 409 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 135/359 (37%), Positives = 194/359 (54%), Gaps = 14/359 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L ID+ A+ NW ++AL A +AVVK + YGLG ++IAPAL+ AG + FFV V EG Sbjct: 49 LTIDVAAIVANWKRLSALVAPAEASAVVKADCYGLGMDRIAPALFAAGCRSFFVACVNEG 108 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQ 127 + LR P A I VL G G E LIPV++S+ Q+T ++ G P + Sbjct: 109 IALRRLLPGAMIHVLSGPMGGDEAEFAAHGLIPVLNSLSQMTGWASFAKKGSGAPAVAIH 168 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG +RLGLS E + L++SHLACADD S +N+ QL R L S Sbjct: 169 IDTGMSRLGLSEPELERLAAKPEILAAMRPILVMSHLACADDSDSPMNARQLTTLRRLAS 228 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 H + S+A+SSGI LG +H + RPG +LYG + +PM V+ E +I+ +R Sbjct: 229 HLPALPQSIAASSGIFLGRGFHLGMVRPGAALYGLNPMPGRPNPMSQVIKLEGKIVQVRD 288 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 + + V YG ++ +A+ A+GYADG+ +LS G G I G V Sbjct: 289 VDSPQTVGYGATHRVEGKRRLAIVAVGYADGWFRSLSNR-----------GHGMIGGVKV 337 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+++MD+T FD+TD S G IQ+ GP D +A + T Y++L +G R Sbjct: 338 PVVGRVSMDLTTFDVTDVPVESAHPGGLIQLIGPGYGPDHLAAEADTIGYEVLTALGRR 396 >gi|238022968|ref|ZP_04603394.1| hypothetical protein GCWU000324_02890 [Kingella oralis ATCC 51147] gi|237865776|gb|EEP66914.1| hypothetical protein GCWU000324_02890 [Kingella oralis ATCC 51147] Length = 351 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 155/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L++N+ + AL GN + AV+K NAYG G + A AL++A F V Sbjct: 2 RPLTCEIRLDYLRDNYQYLKALHGN-KLLAVMKANAYGHGAVQCARALHDA-ADGFAVAF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE V+LR I VL G+ + + + Sbjct: 60 LEEAVELREAGITKPIVVLEGVFQAADYAAVAEYRLWPVVHCQAQLEGLLAFDWREPATV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + +SH ACAD+ + +QLE F Sbjct: 120 WLKMDSGMHRTGFFPHNYAAAFAALRQSGKVGEIVKMSHFACADETERGMTQMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G E SLA+S+ I+ P R G++LYG S ++ V+ ++ + Sbjct: 180 ACAGLDGAE-SLANSAAIMAYPEARRDWGRAGLALYGVDPFGAFSGSLKPVMRLKSEVFA 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R E + YG R + + A GYADGYP I G Sbjct: 239 ERVLQPHEPIGYGASFYTKRSTRVGAVAGGYADGYPRRA-----------ASDTPVAIDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++G+I+MDM D+ + VG +++FG I +++VA A+GT Y++L + R Sbjct: 288 VRSRLIGRISMDMLTVDL-QQADMGVGSEVELFGDIISVNEVAAAAGTIAYEVLCNV-KR 345 Query: 365 YAKFYT 370 + Y+ Sbjct: 346 AKRVYS 351 >gi|221212666|ref|ZP_03585643.1| alanine racemase [Burkholderia multivorans CGD1] gi|221167765|gb|EEE00235.1| alanine racemase [Burkholderia multivorans CGD1] Length = 373 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 159/366 (43%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AVVK NAYG G E+I PAL + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPALAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + + + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELVERHRLTVAVHCDEQLDLLIAAKPQQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ QL +F Sbjct: 121 QLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANADEGE---VDWQLAQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E +L++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGIPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ AGE V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAAGETVGYGRRFTAERPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|184158698|ref|YP_001847037.1| alanine racemase [Acinetobacter baumannii ACICU] gi|183210292|gb|ACC57690.1| Alanine racemase [Acinetobacter baumannii ACICU] gi|322507492|gb|ADX02946.1| Alanine racemase 1, biosynthetic [Acinetobacter baumannii 1656-2] gi|323518612|gb|ADX92993.1| alanine racemase [Acinetobacter baumannii TCDC-AB0715] Length = 356 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E + + VI Q + K ++ ++ Sbjct: 66 IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHIKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I G Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ +R Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350 Query: 365 YAK 367 + Sbjct: 351 PVR 353 >gi|161870495|ref|YP_001599667.1| alanine racemase [Neisseria meningitidis 053442] gi|161596048|gb|ABX73708.1| alanine racemase [Neisseria meningitidis 053442] Length = 422 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 NEF+R ++I L L++N+ + + G + AVVK +AYG G + A AL + Sbjct: 67 RNEFMRPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 124 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +++EG++LR I +L G+ E + + Sbjct: 125 FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWK 184 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +R G + + + SH +CAD+P S + +Q+ Sbjct: 185 KPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQM 244 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E F +G E SLA+S+ IL P R G++LYG + ++ V+ Sbjct: 245 EAFDLGTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLS 303 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 RI R + YG ++ + + + A GYADGYP Sbjct: 304 TRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSP 352 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + ++G+++MDM ++ D+ +G ++++G I ++ VA A+GT Y+L+ Sbjct: 353 VAVDGKLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTININTVAEAAGTIPYELMC 411 Query: 360 RIGTRYAKFY 369 I R Y Sbjct: 412 NI-KRAKFTY 420 >gi|313905464|ref|ZP_07838828.1| alanine racemase [Eubacterium cellulosolvens 6] gi|313469648|gb|EFR64986.1| alanine racemase [Eubacterium cellulosolvens 6] Length = 380 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 169/388 (43%), Gaps = 31/388 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++ L A+++N G + AVVK NAYG G ++A L V Sbjct: 1 MEEYLRTYAEVSLAAIEHNIDEARKRIGSGTKLLAVVKANAYGHGAVRVARHLQEK-VDF 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V ++EEG++LR I L I P + + + ++ P I + S+ + Sbjct: 60 FAVATLEEGLELREAGIHKPILDLGYISPAEYEDMILADIRPSIYHLEDAEILSRKAASL 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSV 177 G S + +DTG R+G + E + ++ + +HL+CAD Sbjct: 120 GRSAKLHIALDTGMTRIGFQVTEGDADQIREISLMPNLEIEGMFTHLSCADMVDKTYCDG 179 Query: 178 QLERFRTLIS----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKIN-- 227 Q E++ T+++ I +S ++ + + + + R GI+ YG Sbjct: 180 QFEKYDTMLAMLEERNVRIPIRHVCNSAAVMEFDIDEKHRYDMVRTGITNYGIYPSEEVK 239 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSG 285 ++ + + +A +I +++ G VSYG + + IA +IGYADGYP LS Sbjct: 240 KENMNLIPALAWKAHVIHVKEVAPGIGVSYGATFVTQKPVTKIATVSIGYADGYPRALS- 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341 G+ I G PILG++ MD M D+++ + V D + + G D I Sbjct: 299 ----------SKGRVLIHGKTAPILGRVCMDQMMVDVSEIPDVAVEDVVTLVGRDGEECI 348 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++++A SG NY++L I R + Y Sbjct: 349 SIEEIADPSGRFNYEMLCDISPRVRRVY 376 >gi|229188510|ref|ZP_04315554.1| Alanine racemase [Bacillus cereus ATCC 10876] gi|228594973|gb|EEK52748.1| Alanine racemase [Bacillus cereus ATCC 10876] Length = 389 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|296445363|ref|ZP_06887321.1| alanine racemase [Methylosinus trichosporium OB3b] gi|296257124|gb|EFH04193.1| alanine racemase [Methylosinus trichosporium OB3b] Length = 380 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 133/362 (36%), Positives = 193/362 (53%), Gaps = 12/362 (3%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL AL NW + A + A AAVVK +AYG+G E AL AG + FFV + EG + Sbjct: 25 VDLAALVANWRLLAARAPGADCAAVVKADAYGIGLEPATRALAAAGCRTFFVATAGEGER 84 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSCGVSHPYALQVD 129 LR P+A ++VL G+ G + L PV++S+ ++ + + S G P ALQ+D Sbjct: 85 LRAVAPRAIVYVLEGLPQGGAFTLAAARLRPVLASLEEIGEWGAFGRSIGRRLPAALQLD 144 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 TG NRLGLS +EA + + +L +L++SH CA P N+ Q+ F + + Sbjct: 145 TGMNRLGLSPREAPAAAAAAQDIEL---TLVMSHFICAQWPDDPRNARQIAAFEAALGCF 201 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249 G ASL +SSG+ L H L RPG +LYGG +PM+ VV EA ++ +R+ Sbjct: 202 PGAPASLCNSSGVFLSEKPHHDLLRPGYALYGGNPTPLCPNPMRPVVRLEASVLAVREIA 261 Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309 AGE V Y G R + +A +GY DG P S S G + I GY P+ Sbjct: 262 AGETVGYDGVWTAARPTRLATLGLGYGDGLPAGAS------SGPGRAGAEAVIGGYRCPL 315 Query: 310 LGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 +G+++MD M D+TD + G +I G I +D++A SGT Y++L R+G RY + Sbjct: 316 VGRVSMDFVMLDVTDIPEAIVHRGASAEILGETIGVDELAARSGTIGYEILTRLGRRYER 375 Query: 368 FY 369 Y Sbjct: 376 RY 377 >gi|294668465|ref|ZP_06733565.1| hypothetical protein NEIELOOT_00380 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309618|gb|EFE50861.1| hypothetical protein NEIELOOT_00380 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 352 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 155/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 LR I L L+ N+ ++ L G + AV+K +AYG G + A AL + F V Sbjct: 2 RPLRADIRLDRLRENYQTLKRLHGG-KMLAVLKADAYGHGAVRCAHALADL-ADGFAVAF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE V+LR I +L G+ E D + + + Sbjct: 60 LEEAVELRTQGITQPIVLLEGVFDAAEYAAVDEYGLWPVVADQWQLETLLKHEWKTPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + ISH ACAD+ + +Q+E F Sbjct: 120 WLKMDSGMHRAGFFPHNYASAYTALAQSGKVSDIVKISHFACADEEERGMTEMQIEAFDM 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G E SLA+S+ +L P R G++LYG + ++ V+ +R+ Sbjct: 180 GCAGLAGEE-SLANSAAMLAYPQARRDWGRAGLALYGIDPFLENDPSIKPVMRLVSRVFA 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R E + YG R + + +AA GYADGYP G + G Sbjct: 239 ERVLQPHEPIGYGASFYTKRSTRVGLAACGYADGYPRRA-----------ATGTPVAVNG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ILG+++MDM ++ D+ VG ++++G + +++VA A+GT Y+LL + R Sbjct: 288 RRSRILGRVSMDMLTVELADTHE-GVGSEVELWGDTVSINEVAAAAGTIAYELLCNV-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFVY 350 >gi|332873690|ref|ZP_08441633.1| alanine racemase [Acinetobacter baumannii 6014059] gi|332738078|gb|EGJ68962.1| alanine racemase [Acinetobacter baumannii 6014059] Length = 358 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 10 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 67 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E + + VI Q + K ++ ++ Sbjct: 68 IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 127 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 128 LNSGMNRLGFKDPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHIKE 184 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 185 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I G Sbjct: 245 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDG 293 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ +R Sbjct: 294 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 352 Query: 365 YAK 367 + Sbjct: 353 PVR 355 >gi|331002036|ref|ZP_08325556.1| alanine racemase [Lachnospiraceae oral taxon 107 str. F0167] gi|330411832|gb|EGG91237.1| alanine racemase [Lachnospiraceae oral taxon 107 str. F0167] Length = 392 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 27/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S K+DL A+K+N L N + AAVVK + YG G ++ + + V Sbjct: 1 MDSYRRAYAKVDLDAIKHNLMITKQALKENMKLAAVVKADGYGHGSVPVSLHIKDI-VDF 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 F V ++EEG+ LR + I +L I K ++ + ++ Q + Sbjct: 60 FCVATLEEGINLRYHGITKPILILACIPRSSYKESIVFDIRESVFTLEQAKKINDEAKEM 119 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G + +DTG NR+G +E+ D ++ I +H AD+ Sbjct: 120 GKKMSIHIAIDTGMNRIGFKPTKESADIIKTINEMNNIEIEGIFTHFHSADEIDLTSAKR 179 Query: 178 QLERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KS 229 Q E F + GIE + +S+ I+ + R GI++YG + KS Sbjct: 180 QEELFLEFLDMLRNMGIEPKITHASNSAAIVNNIGTQLDMVRCGITMYGVSPSNEVNLKS 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ + I I++ AGE VSYG K +D IA + GYADGYP LS Sbjct: 240 FDYRPALSIYSTITYIKEIKAGECVSYGAIFKAEKDMNIATISFGYADGYPRDLSN---- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G I G ILG+I MD T+ D+++ +E+GD + I G I +++ Sbjct: 296 -------KGYVLIHGVKCRILGRICMDQTIVDVSNIPKVEIGDTVVILGESEDSKITVEE 348 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 + S T +Y+ + I R + Y Sbjct: 349 LTKDSNTFSYEFICGINKRVPRLY 372 >gi|289641127|ref|ZP_06473295.1| alanine racemase [Frankia symbiont of Datisca glomerata] gi|289509068|gb|EFD29999.1| alanine racemase [Frankia symbiont of Datisca glomerata] Length = 442 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 159/388 (40%), Gaps = 32/388 (8%) Query: 1 MHSNE---FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + +DL A++ + ++ A +GNA T AVVK + YG G A A AG Sbjct: 1 MTTQSEGLRACAIVDLDAVRASVATLVARAGNAATMAVVKSDGYGHGMSACARAAVEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 V +EEG+ LR +F ++ S+ L + Sbjct: 61 SWLGVAVIEEGLALRAAGFTVPVFAWLTAPGEPLADALAADIDLSASAPWMLAEIAAAAR 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTH---NSFNKKLGQLSLIISHLACADDPSSH 173 G L+ DTG R G + + + L +++ + SHLA AD P Sbjct: 121 HTGRRARVHLKADTGLGRGGATEADWPSLCDAAAALAAEDLIEVTGVWSHLAFADSPGHP 180 Query: 174 VNSVQLERFRT--LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI-- 226 Q+ RF I+ G+ LA+S+ L+ P+ F + RPGIS+YG + Sbjct: 181 TVRGQIGRFADAVTIAEKTGLRPQVRHLANSAATLVSPDARFDMVRPGISVYGLSPGPQV 240 Query: 227 --NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 + ++ +T AR+ L ++ AG VSY + S + + +GYADG P Sbjct: 241 GSPAALGLRPAMTLTARLALAKRVPAGSGVSYAHRYTTAVASTLGLVPLGYADGVPRAAG 300 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----D 340 + + G I G + MD + D+ D ++ GD + +FG + Sbjct: 301 NT-----------AEVLLAGRRRRIAGTVCMDQFVVDVGDDP-VQAGDQVILFGSGEHGE 348 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKF 368 D A A GT NY+++ R+G R + Sbjct: 349 PTAQDWADALGTINYEIVTRVGVRVPRV 376 >gi|258543551|ref|YP_003188984.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01] gi|256634629|dbj|BAI00605.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01] gi|256637685|dbj|BAI03654.1| alanine racemase [Acetobacter pasteurianus IFO 3283-03] gi|256640739|dbj|BAI06701.1| alanine racemase [Acetobacter pasteurianus IFO 3283-07] gi|256643794|dbj|BAI09749.1| alanine racemase [Acetobacter pasteurianus IFO 3283-22] gi|256646849|dbj|BAI12797.1| alanine racemase [Acetobacter pasteurianus IFO 3283-26] gi|256649902|dbj|BAI15843.1| alanine racemase [Acetobacter pasteurianus IFO 3283-32] gi|256652892|dbj|BAI18826.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655946|dbj|BAI21873.1| alanine racemase [Acetobacter pasteurianus IFO 3283-12] Length = 381 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 185/365 (50%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L ++L+A+ N+ + + G AAVVK +AYGLG ++AP L AG + FFV V+EG Sbjct: 24 LTVNLSAIAENYRYLKSRLGKTACAAVVKADAYGLGVAQVAPVLEKAGAEHFFVAHVDEG 83 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 + LR +P + VL+G P ++ NL PV++S+ Q+ A+ Sbjct: 84 LALRPFLSPHTSVTVLHGPRPDAAEVCVRNNLRPVLNSLEQVAVLRDLAAKMDKPLDVAI 143 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +R GLS + + K +SL++SHLACAD P + N++Q ERF Sbjct: 144 QLDTGMSRFGLSEADIHKLVASPELLKGLFVSLVMSHLACADTPQNPANTMQRERFEAYA 203 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 SL++SSGI LGP +HF L RPG +LYG + +P++ VV +A I+ IR Sbjct: 204 RILPQAALSLSASSGIFLGPQFHFDLVRPGAALYGVAPQNEGDNPLKPVVGLQAHILQIR 263 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G+ V YG + +A A GY + + G + KGY Sbjct: 264 HLSKGDRVGYGLTWQAHGPCRVATIATGY-----------ADGFARAGAAAGCAWYKGYR 312 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PILG+I+MD D++ +E +++ +D VA A GT Y++L +G R Sbjct: 313 LPILGRISMDSMTVDLSAVPEGLLEEDSMVELLNESYGVDAVAKAEGTIGYEVLTSLGRR 372 Query: 365 YAKFY 369 Y + Y Sbjct: 373 YHRVY 377 >gi|217965017|ref|YP_002350695.1| alanine racemase [Listeria monocytogenes HCC23] gi|254802368|sp|B8DG73|ALR_LISMH RecName: Full=Alanine racemase gi|217334287|gb|ACK40081.1| alanine racemase [Listeria monocytogenes HCC23] gi|307570423|emb|CAR83602.1| alr [Listeria monocytogenes L99] Length = 368 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 157/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLEDLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ ++EA + QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVGGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNAITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|160939251|ref|ZP_02086602.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC BAA-613] gi|158438214|gb|EDP15974.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC BAA-613] Length = 396 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 28/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+S + IDL A+++N +M +L +A VVK + YG G +A A + V+ Sbjct: 1 MNSYSRVYASIDLDAVESNMRAMKDSLPPSASMIGVVKTDGYGHGAVPVARA-IDPYVKG 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 + V +++E + LR + Q I VL H + + + ++ P + + S+ Sbjct: 60 YAVATIDEAIILRRHGIQKMILVLGVTHESRFEDLVRYDIRPAMFRYEEAGKLSETAVKN 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G L VDTG +R+G++ EA D + + +H A AD+ Sbjct: 120 GARANIHLAVDTGMSRIGMTPDEASADEAARISRLPGICIEGMFTHFARADEADKAFYEA 179 Query: 178 QLERFRTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q +++R I S+ + + + R GIS+YG + Sbjct: 180 QYKKYREFCEMLCSRGVDIPIRHCSNSAGIVEGLDSNGLDMVRAGISIYGLYPSDEVARD 239 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + ++ I I+ G VSYGG R +A +GY DGY +LS Sbjct: 240 RVKLVPAMELKSFITYIKTIGPGTAVSYGGTFVADRPMRVATIPVGYGDGYLRSLSN--- 296 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G ILG+I MD M D+TD E GD + + G D I ++ Sbjct: 297 --------KGAVLIRGKRAEILGRICMDQFMADVTDIPEAEEGDQVTLIGRDGEECITVE 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A SG +Y+++ +IG R + Y Sbjct: 349 ELAALSGGFHYEIICQIGKRVPRVY 373 >gi|229055082|ref|ZP_04195513.1| Alanine racemase [Bacillus cereus AH603] gi|228721266|gb|EEL72791.1| Alanine racemase [Bacillus cereus AH603] Length = 389 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A +D+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 K + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|254776802|ref|ZP_05218318.1| alanine racemase [Mycobacterium avium subsp. avium ATCC 25291] Length = 391 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + + A+ AVVK + YG G + A A AG + V +V Sbjct: 16 LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 75 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + + + +SS Q + + G + Sbjct: 76 DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLAAVRDTGRTATV 135 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + + ++ ++SH+ AD P++ VN VQ +R Sbjct: 136 TVKVDTGLNRNGVPPAQYPSMLTALRRAVAEEAIVPRGLMSHMVYADQPANPVNDVQAQR 195 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F +++ + A L++SS + P+ F + RPGI++YG + + Sbjct: 196 FTDMLAQARAQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 255 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ +GYADG +L G Sbjct: 256 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 307 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 308 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 364 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 365 GTIHYEVVTSPRGRITRTY 383 >gi|115352122|ref|YP_773961.1| alanine racemase [Burkholderia ambifaria AMMD] gi|115282110|gb|ABI87627.1| alanine racemase [Burkholderia ambifaria AMMD] Length = 356 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ VVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIILYGASPSGLSADIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNTLPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAGRVP 352 >gi|293374646|ref|ZP_06620961.1| alanine racemase [Turicibacter sanguinis PC909] gi|292646736|gb|EFF64731.1| alanine racemase [Turicibacter sanguinis PC909] Length = 377 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 148/375 (39%), Gaps = 21/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++DL A+ N + L N + AVVK N YG G +++ AGV + Sbjct: 1 MSFYRDTWAEVDLDAIVYNVQQIKKLHPNKKIFAVVKANGYGHGDVEVSRVALLAGVTNL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ ++E + LR +A I VL I N+ ++ + Sbjct: 61 AVSGLDEALGLRKAGIEAPILVLGMTRLKDVSIAAQYNIALTAHDECWISKL-VELPLET 119 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++D+G +RLGL+ +E + T + D + Q++ Sbjct: 120 PVKVHLKIDSGMHRLGLTTKEKVKETFELLKAAPNVELEGVFTHMATADCDADYLEYQIK 179 Query: 181 RFRTLISHYK--GIEASLASSSGILLGPNYHFQL-TRPGISLYGGTD---KINKSHPMQT 234 F +LI I+ ++ LL + F R G+ LYG I ++ Sbjct: 180 TFESLIEDLDLSSIKYVHIENTATLLQREFEFDHAIRLGLGLYGINPDATFIPLEFDLKP 239 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ++I +++ G+ V YG D I V IGYADG+ G + Sbjct: 240 ALKLYSKITQVKRINKGDKVGYGATYTAENDEWIGVVPIGYADGWIRAHQGRN------- 292 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 ++G I+G++ MD M + +E+G + + G + ++ VA GT + Sbjct: 293 -----VIVEGKECEIIGRVCMDQLMIRLPH--EVEMGTMVTLIGDGMPVERVADEIGTIS 345 Query: 355 YDLLVRIGTRYAKFY 369 Y++L + R + Y Sbjct: 346 YEILCMLSDRVPRVY 360 >gi|21223124|ref|NP_628903.1| alanine racemase [Streptomyces coelicolor A3(2)] gi|6647408|sp|O86786|ALR_STRCO RecName: Full=Alanine racemase gi|3449257|emb|CAA20401.1| putative alanine racemase [Streptomyces coelicolor A3(2)] Length = 391 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 166/386 (43%), Gaps = 34/386 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N ++ + A AVVK +AYG G A A AG + Sbjct: 15 RARAEIDLAALRANVRALRERAPGAALMAVVKADAYGHGAIPCARAAVAAGATWLGTATP 74 Query: 66 EEGVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +E + LR P RI G + + L +S++ + + GV Sbjct: 75 QEALALRAAEPGLPDDVRIMCWLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAARAAGV 134 Query: 121 SHPYALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 L+ DTG R G + + + + L +++ + SH ACAD+P + Sbjct: 135 PARVQLKADTGLGRGGCQPGADWERLVGAALRAEEEGLLRVTGLWSHFACADEPGHPSIA 194 Query: 177 VQLERFRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227 QL RFR + + +G+ +A+S L P+ HF L RPGI++YG + Sbjct: 195 AQLTRFREMTAYAEQRGLRPEVRHIANSPATLTLPDAHFDLVRPGIAMYGVSPSPEIGTP 254 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ V+T A + L+++ G VSYG ++ + + +GYADG P S Sbjct: 255 ADFGLRPVMTLAASLALVKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIPRHASSS- 313 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKL 343 G + G + G+I MD + D+ E G +FGP + Sbjct: 314 ----------GPVLVDGKWRTVAGRIAMDQFVVDLGGDRP-EPGAEAVLFGPGDRGEPTA 362 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +D A A+GT Y+++ RIG+R + Y Sbjct: 363 EDWAQAAGTIAYEIVTRIGSRVPRVY 388 >gi|163938242|ref|YP_001643126.1| alanine racemase [Bacillus weihenstephanensis KBAB4] gi|229165223|ref|ZP_04293015.1| Alanine racemase [Bacillus cereus AH621] gi|163860439|gb|ABY41498.1| alanine racemase [Bacillus weihenstephanensis KBAB4] gi|228618255|gb|EEK75288.1| Alanine racemase [Bacillus cereus AH621] Length = 389 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A +D+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATSDEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 K + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|218895364|ref|YP_002443775.1| alanine racemase [Bacillus cereus G9842] gi|228963335|ref|ZP_04124500.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001] gi|218545448|gb|ACK97842.1| alanine racemase [Bacillus cereus G9842] gi|228796363|gb|EEM43806.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001] Length = 389 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLRSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|113868091|ref|YP_726580.1| alanine racemase [Ralstonia eutropha H16] gi|123032940|sp|Q0K9V9|ALR_RALEH RecName: Full=Alanine racemase gi|113526867|emb|CAJ93212.1| alanine racemase [Ralstonia eutropha H16] Length = 373 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 155/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + + +R AVVK NAYG G ++ AL G F + Sbjct: 3 RPIHAVIHQPALANNLDIIRGKAPESRIWAVVKANAYGHGIRRVFAALR--GADGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR Q I +L G Q+ + + + + + Sbjct: 61 LNEAVLLRDLGWQGPILLLEGFFQPQDVAVIEQYRLTTAIHCDEQLRMLESARAKGPLAI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG NRLG + + ++H + AD + Q+E F Sbjct: 121 QLKLNTGMNRLGFHPAAYRTAWERARAMPCVGSIVHMTHFSDADSARG--VAHQIEAFDA 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 ++ G EASL++S+ +L P H RPGI LYG + +Q ++ + Sbjct: 179 ATANLPG-EASLSNSAAVLWHPQAHRAWVRPGIILYGASPTGRDADIAGTGLQPAMSLHS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG R I V A GYADGYP SG + +P Sbjct: 238 ELISVQDLQPGDTVGYGSLFTAERPMRIGVVACGYADGYPRHASGWGEQRAP-------V 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T VG + ++G + +D+VA ASGT Y+L+ Sbjct: 291 LVDGVRTELVGRVSMDMLCVDLTPCPKARVGSPVTLWGQGLPIDEVAQASGTVGYELMCA 350 Query: 361 IGTRYA 366 + R Sbjct: 351 LAPRVP 356 >gi|254422201|ref|ZP_05035919.1| alanine racemase [Synechococcus sp. PCC 7335] gi|196189690|gb|EDX84654.1| alanine racemase [Synechococcus sp. PCC 7335] Length = 399 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 27/379 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++I+LTAL +N + A+ +VVK +AYG G +A AG V + Sbjct: 17 RAWVEINLTALAHNVKVLKAMLPKGTDLLSVVKADAYGHGAVMVADVAIAAGTTWLGVAT 76 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSH 122 V EG++LR I V+ ++ E + ++ L F L Sbjct: 77 VPEGIELRQAGIDVPILVMGAVNDSAEVRAIAHWNLQPVIVNPKQALVFSETLKDQRTPV 136 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +Q+DTG +RLG S Q A++F + + SH A AD V +Q +RF Sbjct: 137 QVHIQLDTGMSRLGFSWQRAVEFVRFVRQLPYLETVGLCSHFATADSLDQTVMRLQHDRF 196 Query: 183 RTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + I+ K + +A+S+ L+ P +H+ + R G++ YG + ++ + Sbjct: 197 KQAIARLKQESLLPVRLHIANSAAALIAPTFHYDMVRMGLATYGLYPAPHLRDKLKVELQ 256 Query: 238 A----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +ARI I++ A VSY Q + IA+ IGYADG P LS Sbjct: 257 PVLELKARITHIKEIDAHTGVSYSYQFIAPKSMKIAIVGIGYADGVPRILSN-------- 308 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + + V +G ITMD + D++D S++ GD + + G + D+ A Sbjct: 309 ---KMQVVVNEQRVNQIGAITMDQLIIDVSDLESVQEGDIVTLLGRTQYHCLHADEWAEL 365 Query: 350 SGTTNYDLLVRIGTRYAKF 368 +GT ++++L R + Sbjct: 366 AGTISWEILCGFKHRLPRV 384 >gi|302334971|ref|YP_003800178.1| alanine racemase [Olsenella uli DSM 7084] gi|301318811|gb|ADK67298.1| alanine racemase [Olsenella uli DSM 7084] Length = 386 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 95/390 (24%), Positives = 167/390 (42%), Gaps = 33/390 (8%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 N + +++DL A++ N + AL + VK +AYG G + A A+ ++G F Sbjct: 8 KNRWAWVEVDLNAIRKNTRAFKALLEPRTQMMCAVKADAYGHGAVECAKAMASSGASQFA 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGV 120 V +V+EGV+LR I +L + +++P + S L + + +S G Sbjct: 68 VATVDEGVELRRGGVAQPILMLNECPLEGIDDLLAFDVMPSVYTSGFALAYGERAVSLGK 127 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 Y L +DTG +R+G+ ++ ++F + + + +H A AD Q Sbjct: 128 VGRYHLAIDTGMSRIGVLPEDVVEFRRMIDFHRGLECAGSFTHFATADAIGDWDFRQQSL 187 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQ 233 RF +S +G ++ G +L P HF + R GI LYG ++ Sbjct: 188 RFSDAVSALEGAGLEVGLVHCDNTPGTVLHPENHFDMCRVGIGLYGLQPSETTAPRIALE 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ AR+ + GE V YG ++ + + IA +GYADG +LS Sbjct: 248 PAMSVRARVTRVVNPAVGEGVGYGFTYRVPKPNIQIATVPVGYADGLSRSLSN------- 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTM--FDITDS------LSIEVGDYIQIFG----PD 340 ++G +G+I MD M D+ D ++E GD + + G + Sbjct: 301 ----NMDVLVRGMRARQVGRICMDQFMFAVDVNDIRAYHPATAVERGDVVTLIGRDGDDE 356 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 I D++A T NY+++ R + +T Sbjct: 357 ISADEMADRRDTINYEVVCNFSQRLDRIFT 386 >gi|262369752|ref|ZP_06063080.1| alanine racemase [Acinetobacter johnsonii SH046] gi|262315820|gb|EEY96859.1| alanine racemase [Acinetobacter johnsonii SH046] Length = 356 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ NA+ ++VK NAYG G + AL F V +EE ++ Sbjct: 8 IDSQALQYNLNRVKQLAPNAKIVSMVKANAYGHGVKDCLAALSE--TDAFGVACLEEALE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127 +R + I ++ G+ E + + L VI Q+ + K ++ Sbjct: 66 IRALGFEQPITLIEGVFSADEMSSVIEQKLECVIHHPQQVDWLLAHKTAYIAQKLKLWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E ++ + + + + A AD +N Q +F + Sbjct: 126 LNSGMNRLGFKVAEIINVINTLKAEGFTCVLAMHFANADAD---HPLNEQQRAQFLHIKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + NK ++ V+T A II Sbjct: 183 ACSPILASCCNSAAIFKWPELNFDFVRPGIMLYGASPFANKNAHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG +++ +A+ +IGY DGYP I G Sbjct: 243 LNTIQAGEGVGYGSHFVANQETELAIVSIGYGDGYPRAF-----------PKQNYVAING 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 V ++G++ MDM D+T + ++G ++++G + +DDVA A+GT Y+LL R+ R Sbjct: 292 QAVAVVGRVAMDMIAIDVTGL-NAKLGTKVELWGENRLVDDVAEANGTIGYELLCRLSNR 350 Query: 365 YAK 367 + Sbjct: 351 PIR 353 >gi|239637370|ref|ZP_04678352.1| alanine racemase [Staphylococcus warneri L37603] gi|239596970|gb|EEQ79485.1| alanine racemase [Staphylococcus warneri L37603] Length = 382 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 167/382 (43%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R L IDL A+ +N+ + + L N +V+K N YGLG +IA L G Sbjct: 2 SEKFYRSTYLNIDLNAILSNYQTFDKLHANKTVISVIKANGYGLGSVRIAQHLMENGASF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMS 117 F V +++E ++LR++ +A+I +L I P + S + + + Sbjct: 62 FAVATLDEAIELRMHGIKAKILILGVIPPKDINKAIQHRVALTVPSKSWLKESIKNISDE 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + L++DTG RLG+ ++E + + +H ACAD+P + + Sbjct: 122 NEKALWLHLKLDTGMGRLGMKDVEEYKEVVDIISKYDQLVFEGVYTHFACADEPGDDM-A 180 Query: 177 VQLERFRTLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231 Q ++F+ L+ + +S+G LL R GISLYG N Sbjct: 181 TQYQKFKELVEQVEKPHYIHTQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKENVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + I+ + G+ VSYG T + IAV IGYADGY ++ G Sbjct: 241 LKPSAQLVSEIVQTKTLNVGDSVSYGSTYTATEPTRIAVLPIGYADGYLRSMQGS----- 295 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 + G ++G++ MD TM I D +++VGD + + + ++ +A Sbjct: 296 -------YVNVNGQQCEVIGRVCMDQTMVKIPD--TVKVGDKVILLDNHVDTEQSVEALA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 347 KQQNTINYEVLCNLSRRLPRIY 368 >gi|172060986|ref|YP_001808638.1| alanine racemase [Burkholderia ambifaria MC40-6] gi|171993503|gb|ACB64422.1| alanine racemase [Burkholderia ambifaria MC40-6] Length = 356 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ VVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIMLYGASPSGLSADIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAGRVP 352 >gi|289434154|ref|YP_003464026.1| hypothetical protein lse_0787 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170398|emb|CBH26938.1| alr [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 368 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 150/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID +A++ N N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRSAIRENIKNEQNKLPKNVVVWAVVKANAYGHGIIEVAKTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAHNNI---SLTIFREDWLDGVHLETPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++D+G RLG+ +EA + L +H A AD + QL + Sbjct: 123 KVHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 F ++ K + +S+ LL F R GIS+YG T I N ++ Sbjct: 183 FDAILKGLKSRPRFVHTANSAAALLQSQIGFDAVRFGISMYGLTPSIEIKSNLPFKLKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASG 351 + + G PI+G++ MD T+ + + G + I G + DD A Sbjct: 294 ---QVLVDGKKAPIIGRVCMDQTIIKLP--YEFQTGSKVTIIGMDHGNSVTADDAAKYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLTERIPRKY 366 >gi|227544692|ref|ZP_03974741.1| alanine racemase [Lactobacillus reuteri CF48-3A] gi|300909066|ref|ZP_07126529.1| alanine racemase [Lactobacillus reuteri SD2112] gi|227185338|gb|EEI65409.1| alanine racemase [Lactobacillus reuteri CF48-3A] gi|300894473|gb|EFK87831.1| alanine racemase [Lactobacillus reuteri SD2112] Length = 375 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 150/375 (40%), Gaps = 28/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL AL++N + N+R AVVK NAYG G +A +G V ++E Sbjct: 11 LIVDLDALRHNIQEQRKVLPENSRILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGVSHPY 124 ++L +A VL I + + + Q +++ Sbjct: 71 ALELWDNGIEAMTLVLGITPVEDALIAAQAGVSLTVGSLDWLEQYHQLAQVAKPKKPLKV 130 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +D+G R+G + + + + +H A AD P + + Q++R+ Sbjct: 131 HLGIDSGMGRIGFTEVATFKQAVKLLDSPEFEFEGMFTHFATADSPDENYFNQQVQRWHQ 190 Query: 185 LISHYKGIEASLA--SSSGILLGPN-YHFQLTRPGISLYGGTDK---INKSHPMQTVVTA 238 ++ + + +S+ L R GIS+YG + + +Q V + Sbjct: 191 FVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRDLKLTLDLQPVSSL 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I +++ AG VSYG +D +A IGYADGYP ++G Sbjct: 251 VSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGY------------ 298 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 K + G I G++ MD M + + G + + G +I D+A +GT N Sbjct: 299 KVLVDGQFCDIAGRVCMDQMMIQLPKYYPV--GTPVVLMGKSGDQEITATDLAEQAGTIN 356 Query: 355 YDLLVRIGTRYAKFY 369 Y++L I R + Y Sbjct: 357 YEILTNISNRVHRIY 371 >gi|153812757|ref|ZP_01965425.1| hypothetical protein RUMOBE_03164 [Ruminococcus obeum ATCC 29174] gi|149831117|gb|EDM86206.1| hypothetical protein RUMOBE_03164 [Ruminococcus obeum ATCC 29174] Length = 380 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M E ++ + L A+ +N+ M ++ R AV+K + YG G E I+ + + + Sbjct: 1 MKKFERVKAVVSLDAIAHNFEEMKKNIADGTRIVAVIKADGYGHGAEAISRLIEDYEYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 F + EE ++L+ + + +L + + + ++ + S Sbjct: 61 GFATATAEEAIQLKDAGIEKPVLILGLVFEEYFQELIRKDVRLTVCEYDVAKILSDEAVR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + +DTG +R+G + + E+++ ++ + +H A AD+ Sbjct: 121 QGRQVHIHIALDTGMSRIGFADKPESVEEIKKIAALPNVEIEGMFTHFARADETDKAPAV 180 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 QL+R+ T + + ++S+GI+ P + L R GI++YG Sbjct: 181 EQLKRYLTFADLLEKAGVQIPLKHCSNSAGIIRMPEANLNLVRAGITIYGIYPSDEVERD 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ + ++ + ++ AG +SYGG D +A +GYADGYP TLS Sbjct: 241 IVKLKPAMELKSHVAYVKDLPAGTAISYGGTFASENDLRVATIPVGYADGYPRTLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PILG++ MD M D+T ++ GD + + G D I ++ Sbjct: 298 --------KGWVLIHGQKAPILGRVCMDQFMVDVTHIPDVKHGDEVTLIGRDGDEFISIE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 SG +Y+ I R + Y Sbjct: 350 TFGDMSGRFSYEFACDISKRVPRVY 374 >gi|332967677|gb|EGK06788.1| alanine racemase [Kingella kingae ATCC 23330] Length = 399 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 162/372 (43%), Gaps = 20/372 (5%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + L +I L L++N+ + G + AVVK NAYG G + A AL++ F Sbjct: 43 TTMRPLVCEIRLEHLRHNYRILKEKHGG-KLLAVVKANAYGHGAVRCALALHDI-ADGFA 100 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V +EE ++LR I +L G QE + + + + S Sbjct: 101 VAFLEEAIELRENGITKPIVLLEGAFDAQEYHLIEQWNLWTVVHNQVQLEDLLAHDWKQS 160 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++D+G +R G + +SH ACADD + +Q+E Sbjct: 161 ATVWLKMDSGMHRAGFFPHHYAAAYTALSQSNKVGKIVKMSHFACADDAERGMTEIQIEA 220 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVT 237 F + G E+SLA+S+ IL P H R GI+LYG + ++ ++ V+ Sbjct: 221 FDLACADLAG-ESSLANSAAILAYPEAHRDWGRAGIALYGISPFTDRAGCFDADLKPVMR 279 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +++ R E + YG R + + V A GYADGYP + Sbjct: 280 LVSKVFAERVLQPHEPIGYGATFYTKRSTRVGVVACGYADGYPRATAN-----------D 328 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 I G ++G+++MDM ++TDS +G +++FG + +++VA A+GT +Y++ Sbjct: 329 TPVAINGIRSRLIGRVSMDMITVELTDSH-AGLGSEVELFGDVVNVNEVARAAGTISYEI 387 Query: 358 LVRIGTRYAKFY 369 I R + Y Sbjct: 388 TCNI-KRATRVY 398 >gi|228906022|ref|ZP_04069914.1| Alanine racemase [Bacillus thuringiensis IBL 200] gi|228937533|ref|ZP_04100175.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970420|ref|ZP_04131075.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976990|ref|ZP_04137398.1| Alanine racemase [Bacillus thuringiensis Bt407] gi|228782737|gb|EEM30907.1| Alanine racemase [Bacillus thuringiensis Bt407] gi|228789306|gb|EEM37230.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822144|gb|EEM68130.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853625|gb|EEM98390.1| Alanine racemase [Bacillus thuringiensis IBL 200] gi|326938023|gb|AEA13919.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43] Length = 389 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKAFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|119713697|gb|ABL97747.1| alanine racemase [uncultured marine bacterium EB0_41B09] Length = 360 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 165/370 (44%), Gaps = 21/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ IDL+AL +N + ++ N++ AV+K NAYG G + A+ + + + + Sbjct: 2 RPLKAYIDLSALTSNLKLVKKIAKNSKVMAVLKANAYGHGLIESVKAIKS--AEGIAILT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE VK+R + I +L G+ ++ + + ++ Y ++ Sbjct: 60 IEEAVKIRKAGFKNTILLLEGLFAAEDIHQAEKLNLNIVVHNDLQMDYLSDVTLKKPINV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG NRLG + N +++H A AD+ + QL+ F Sbjct: 120 HLKINTGMNRLGFPPDQVDYLIENLNANPNVSEITLMTHFATADE--KEGITKQLDCFNR 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 +++ +S+A+S+ + P RPGI LYG + + K ++ V++ ++ Sbjct: 178 -VTNNYNFSSSVANSAALYKFPEARLDWVRPGIMLYGASPFEDISAKKIEVKPVMSLVSK 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II I+ G+ V YG D I + A GY DGYP G F Sbjct: 237 IIAIQDIKKGQAVGYGNNFIAKDDMRIGIVACGYGDGYPRHAK-----------TGTPIF 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + +G+++MDM D++ +G ++++G I +D+VA SGT Y+LL I Sbjct: 286 VHNKTTKTVGRVSMDMLYVDLSKIEKAVIGSKVEMWGNHISVDEVAKNSGTVGYELLCNI 345 Query: 362 --GTRYAKFY 369 +R Y Sbjct: 346 SASSRVPLEY 355 >gi|170702444|ref|ZP_02893329.1| alanine racemase [Burkholderia ambifaria IOP40-10] gi|170132647|gb|EDT01090.1| alanine racemase [Burkholderia ambifaria IOP40-10] Length = 356 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ VVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIILYGASPSGLSADIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAGRVP 352 >gi|72163005|ref|YP_290662.1| alanine racemase [Thermobifida fusca YX] gi|123628791|sp|Q47LN3|ALR_THEFY RecName: Full=Alanine racemase gi|71916737|gb|AAZ56639.1| alanine racemase [Thermobifida fusca YX] Length = 374 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 152/381 (39%), Gaps = 26/381 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + F +IDL A+ N + + A+ VVK + YG G A A G Sbjct: 2 SSFAEARIDLDAISGNIALLAERAAGAQVMGVVKADGYGHGMVPAARAALAGGATWLGTA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 + E ++LR A I D + I S+ Sbjct: 62 FIAEALQLRAAGIDAPILAWLVPPGEPLTEAIDAGIDLGIGSMWVINEVIDAARQARRQA 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQL 179 L+VDTG NR G+ + + ++ + SHLACAD+P + + QL Sbjct: 122 RIHLKVDTGLNRGGIGPADWSAAAAALARAEAAGLLTVTGVFSHLACADEPDNPATTAQL 181 Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-Q 233 E F + + +A+S+ +L P+ F L RPGI+ YG + P + Sbjct: 182 EAFHQALSVVDKAGLHPQVRHIANSAALLTRPDARFDLVRPGIATYGLSPIPGLDVPGLR 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A ++ ++ G VSYG + R++ +A+ +GY DG P + Sbjct: 242 PAMTLSATLVGCKRVRPGSGVSYGYRYVTDRETNLALVPLGYGDGVPRAATNR------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 F+ G I G + MD + DI D ++ GD +FGP + D A A Sbjct: 295 ----APVFVAGRRRTIAGTVCMDQFVVDIGDD-TVTPGDRAILFGPGDHGEPTAQDWADA 349 Query: 350 SGTTNYDLLVRIGTRYAKFYT 370 T +Y+++ RIG R + YT Sbjct: 350 LDTISYEIVTRIGRRVPRVYT 370 >gi|73541623|ref|YP_296143.1| alanine racemase [Ralstonia eutropha JMP134] gi|72119036|gb|AAZ61299.1| Alanine racemase region [Ralstonia eutropha JMP134] Length = 373 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+ NN + + +R AV+K NAYG G ++ L G F + Sbjct: 3 RPIHAVIHQPAIANNLEVVRRHAPGSRVWAVIKANAYGHGIRRVFAGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V+LR Q I +L G Q+ + + + + + Sbjct: 61 LNEAVQLRDLGWQGPILLLEGFFQPQDVPLLEQYRLTTAVHCDEQLRMLESARPKGPLAI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG NRLG + + + ++H + AD P + Q+E F Sbjct: 121 QLKLNTGMNRLGFHPSQYRTAWERARAMPCVGSIVHMTHFSDADTPRGI--AHQIEAFDK 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 ++ G EASL++S+ +L P H RPG+ LYG + ++ +Q ++ + Sbjct: 179 ATANLPG-EASLSNSAAVLWHPEAHRAWVRPGVILYGASPTGREADIAGVGLQPAMSLHS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG R I V A GYADGYP +G +P Sbjct: 238 ELIAVQDLQPGDTVGYGSMFTADRPMRIGVVACGYADGYPRHATGWGEHRAP-------V 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+ +G + ++G + +DDVA ASGT Y+L+ Sbjct: 291 LVDGVRTQLVGRVSMDMLCVDLGPCPKARIGSPVTLWGQGLPIDDVAQASGTVGYELMCA 350 Query: 361 IGTRYA 366 + R Sbjct: 351 LAPRVP 356 >gi|75760683|ref|ZP_00740709.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228898981|ref|ZP_04063258.1| Alanine racemase [Bacillus thuringiensis IBL 4222] gi|74491833|gb|EAO55023.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860655|gb|EEN05038.1| Alanine racemase [Bacillus thuringiensis IBL 4222] Length = 389 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLRSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|289450381|ref|YP_003475805.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184928|gb|ADC91353.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 386 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 167/383 (43%), Gaps = 26/383 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + + +I L L NN ++ A ++ + V+K +AYG G A + + GV+ Sbjct: 11 NKRDRCWAEISLANLANNIANIRAAIAPQVKIMGVIKGDAYGHGAVMTARTMIDCGVEYL 70 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119 V +V+E ++LR + I VL + I +L + + S Sbjct: 71 AVATVDEALELRGNDIKTPILVLGYTDVSRAMDIVANDLTQTVYELTLPEAMSLAAIKLN 130 Query: 120 VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + L+++TG R+G+ E ++F + + I +H A AD+ S +Q Sbjct: 131 KTAKIHLKIETGMERIGIPADEHLIEFAKKLYALPNVDVEGIFTHFATADEAKSDFVKLQ 190 Query: 179 LERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 ERF+ + Y +S+ IL P YH + R G +YG P Q Sbjct: 191 FERFKKATEVLATAGYYPRYRHCCNSAAILRYPEYHLDMVRAGGLVYGFVPDFCHVQPGQ 250 Query: 234 TV--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ A+++LI+K G + Y + +RD +A ++GY DG LS Sbjct: 251 YKPLMSLYAKVVLIKKVAKGTSIGYNRRFTASRDMWVATISVGYGDGIARALS------- 303 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFG----PDIKLDDV 346 + + G+ V +G I MD+ M DITD + +++GD + +FG + D++ Sbjct: 304 ----EKLQVLLAGHRVRQVGNICMDLCMIDITDIVDQVKLGDQVTVFGAAATNSMTADEL 359 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A GT NY++ + I R +FY Sbjct: 360 AALQGTINYEITININKRVPRFY 382 >gi|296501064|ref|YP_003662764.1| alanine racemase [Bacillus thuringiensis BMB171] gi|296322116|gb|ADH05044.1| alanine racemase [Bacillus thuringiensis BMB171] Length = 389 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + N AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSNVEIFAVVKANAYGHDYIPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITEPILVLGPSPPRDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + +L + +H A AD+ + Sbjct: 121 DGSSVMKFHINFDSGMGRIGIRERKELKEFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFELEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|118465728|ref|YP_883507.1| alanine racemase [Mycobacterium avium 104] gi|20141183|sp|Q9L888|ALR_MYCAV RecName: Full=Alanine racemase gi|166969418|sp|A0QKR9|ALR_MYCA1 RecName: Full=Alanine racemase gi|118167015|gb|ABK67912.1| alanine racemase [Mycobacterium avium 104] Length = 388 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + + A+ AVVK + YG G + A A AG + V +V Sbjct: 13 LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + + + +SS Q + + G + Sbjct: 73 DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATV 132 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + + ++ ++SH+ AD P++ VN VQ +R Sbjct: 133 TVKVDTGLNRNGVPPAQYPSMLTALRRAVAEQAIVPRGLMSHMVYADQPANPVNDVQAQR 192 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F +++ + A L++SS + P+ F + RPGI++YG + + Sbjct: 193 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ +GYADG +L G Sbjct: 253 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 304 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 305 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 361 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 362 GTIHYEVVTSPRGRITRTY 380 >gi|20137236|sp|Q9FCV2|ALR_LACRE RecName: Full=Alanine racemase gi|9798537|emb|CAC03497.1| alanine racemase [Lactobacillus reuteri] Length = 375 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 149/377 (39%), Gaps = 25/377 (6%) Query: 4 NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL +D A++ N + L + AVVK N YG G +A AG F V Sbjct: 6 HRASRLVVDAAAIRQNVKKEIERLDPQSELFAVVKANGYGHGLIPVARYTEQAGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR I VL + + + N+ + V LT + ++ Sbjct: 66 AILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLTAEHPL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +DTG R+G + L+ N + +H A AD+ ++Q++R Sbjct: 126 KVHLALDTGMGRIGFQESDGLNQAAELLTNDPRFVFEGVFTHFATADEKDPTYFNLQVDR 185 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F L+ + +++ L + L R G+ +YG + + +Q + Sbjct: 186 FHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAM 245 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E+++ + G VSYG + +D I IGYADGYP L G Sbjct: 246 TLESQLSFSKLLKKGRSVSYGATYTVEQDEWIGTVPIGYADGYPRCLQGF---------- 295 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352 + G+ I+G++ MD M + G + + G I + D+A +GT Sbjct: 296 --HVLVDGHFCEIVGRVCMDQLMIRLPHEYPA--GTSVILAGKSQGKSISMTDIADYAGT 351 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++ R + Y Sbjct: 352 INYEITCGFTERIPRVY 368 >gi|332519358|ref|ZP_08395825.1| alanine racemase [Lacinutrix algicola 5H-3-7-4] gi|332045206|gb|EGI81399.1| alanine racemase [Lacinutrix algicola 5H-3-7-4] Length = 368 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 159/376 (42%), Gaps = 21/376 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M L+IDL ALK+N + LS + + AV+K AYG +IA L N V Sbjct: 1 MPKAHETTLEIDLKALKHNVGYIKSKLSKDTKFLAVIKAFAYGSDALEIAKYLENLNVDY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V EGV LR + I VL+ P K I + L P I S L + + Sbjct: 61 FAVAYTNEGVALRDAGIETPILVLHP-QPENFKTIIERCLEPNIYSQRVLKSFIAVAENL 119 Query: 120 V--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 ++P ++ ++G NRLG ++ + ++ + SHLA ++D Sbjct: 120 KQNNYPIHIKYNSGLNRLGFNVNDIEAINKTLKQTAAIKVKSLFSHLAASEDLNEREFTL 179 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+ F+T + + +++SGIL P HF + R GI LYG + + Sbjct: 180 NQIHNFKTFANTLTKALNYKVLLHQSNTSGILNYPEAHFSMVRCGIGLYGFANDNAYNKN 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + + T + I I GE + Y K ++ + A IG+ADG Sbjct: 240 LIPIATLKTIISQIHTLNVGESLGYNRAFKASKITKTATLPIGHADGIGRQYGNG----- 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G ++ I+G + MDM M D+TD + GD + IFGP K++ + Sbjct: 295 -----KGFVYVNEQKAYIVGNVCMDMIMVDVTDI-DCKEGDEVIIFGPKHKINSLTKTVD 348 Query: 352 TTNYDLLVRIGTRYAK 367 T Y+LL + R + Sbjct: 349 TIPYELLTAVSQRIKR 364 >gi|134103194|ref|YP_001108855.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338] gi|133915817|emb|CAM05930.1| alanine racemase [Saccharopolyspora erythraea NRRL 2338] Length = 378 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 164/380 (43%), Gaps = 27/380 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H++ L+ID+ A+++N + A + ART +VK + YG G +A A AG Sbjct: 5 HAHR-ADLRIDVDAIRHNVGVLAARAAGARTMVIVKSDGYGHGTVTVARAALEAGAGQIG 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGV 120 V ++ E V LR A + + SSV + G+ Sbjct: 64 VAALGEAVALREAGITAPLMCWLYSRGDDFAPALRHGVELSASSVRGLREIAATAAELGL 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSV 177 L++DTG R G E + + + + SHLACAD+ Sbjct: 124 VARLHLKIDTGLCRSGCPEAEWPNLVDEAAKAEADGHVEVVAVWSHLACADELGHPSIDN 183 Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPM 232 Q RFR + G LA+S+ +L P+ HF++ RPGI++YG + H + Sbjct: 184 QALRFRRAYERARTAGLGPIRHLANSAAVLTRPDLHFEMVRPGIAVYGLDPVPQDGDHGL 243 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T + + L ++ AGE VSYG R +A+ +GYADG P TLSG S Sbjct: 244 RPAMTFRSSVSLTKRVAAGESVSYGHTWTADRPVNLALVPVGYADGVPRTLSGRMS---- 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 ++ G P++G++ MD + + D + GD + +FGP + + A Sbjct: 300 -------VWLAGRRRPVVGRVCMDQLVV-LCDDDVVREGDEVILFGPGDRGEPTAAEWAD 351 Query: 349 ASGTTNYDLLVRI-GTRYAK 367 GT +Y+++ + R + Sbjct: 352 ELGTIHYEIVTGMYRPRVTR 371 >gi|328948124|ref|YP_004365461.1| Alanine racemase [Treponema succinifaciens DSM 2489] gi|328448448|gb|AEB14164.1| Alanine racemase [Treponema succinifaciens DSM 2489] Length = 383 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 100/390 (25%), Positives = 152/390 (38%), Gaps = 35/390 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R I L LKNN + L + VK +AYG G A A AG V Sbjct: 2 RATRALIHLGNLKNNIIEIKKCLKPETKMCVAVKADAYGHGAVPCARAALEAGADYLSVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVS 121 + EEGV LR + I +L P + + + + P + + + + Sbjct: 62 TYEEGVVLRNAGIASPILMLSLCSPDEVEEVVSAGITPFVFDEEYIELFSSACKKLGIKK 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178 L VDTG R+G EA + N L +H A +D + Q Sbjct: 122 FEVHLAVDTGMGRIGCLPSEAGNIALKIKNCGNLVLGGTATHFALSDCVSEKGKSYTKFQ 181 Query: 179 LERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD--------- 224 E F I++ K + A+S+ L P+ H + RPGI +YG Sbjct: 182 FENFLEAINNIKSVGINPGICHCANSATTLDSPDMHLDMVRPGIIVYGYYADEVSKEYLV 241 Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 K+ ++ V+T E+ + IRK G+ YG + + D+ + V IGYADG+ S Sbjct: 242 SKGKNVELKPVMTLESCVSSIRKFEKGKFAGYGCRWEAKSDTNVGVVPIGYADGWFRRFS 301 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340 G K + G PI G+I MD M D+ + + D +FG Sbjct: 302 ----------ECGVKVAVNGKNYPICGRICMDQCMIDLGADCTAKRWDKAVLFGDSSDGA 351 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A +GT +Y++ I R + + Sbjct: 352 LQTADDIAHLTGTISYEITCGISKRVPRVF 381 >gi|257456069|ref|ZP_05621272.1| alanine racemase [Treponema vincentii ATCC 35580] gi|257446527|gb|EEV21567.1| alanine racemase [Treponema vincentii ATCC 35580] Length = 375 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 158/380 (41%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I L LK N + L + VK +AYG G + A A AGV V Sbjct: 2 RATKAIIHLDNLKYNITQIKQTLVPETKICLPVKADAYGHGAVRTAIAAIRAGVSYLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 SV+EG++LR A I L + I D L P++ + ++ + Sbjct: 62 SVQEGIELREAGIVAPIISLSLPILEEIDSIIDYKLEPLVIDEEFINELNRAADAQKKTV 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQL 179 L++DTG +R+G EA+ K +L + +H A AD + QL Sbjct: 122 AVHLKIDTGMSRIGCKPSEAVKLATQIVRAKHLRLQGVATHFAVADSDSESDRAFTKNQL 181 Query: 180 ERFRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSH--PM 232 ERF + GI L ++ L P F + RPG+ YG N ++ + Sbjct: 182 ERFTDAVEAIRQTGIHIPLVHAANSGAVQLLPEARFDMVRPGLLAYGYLPIRNAAYTIDV 241 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ +++LI++ AG VSYG +D+ IA IGYADG LS Sbjct: 242 KPVMELVTQVVLIKQIRAGTCVSYGRNWTAPQDTYIATLPIGYADGLRRALS-------- 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---KLDDVALA 349 G K I PI+G+I MD M D+ ++ D + IFGP+ +A Sbjct: 294 ---PGLKVRIGSEFFPIVGRICMDQCMIDLGAHPWVQRWDEVCIFGPNPQDNSAQTLADI 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 +GT Y++ I R + + Sbjct: 351 AGTIPYEITCGIHKRVPRVF 370 >gi|163868814|ref|YP_001610040.1| hypothetical protein Btr_1758 [Bartonella tribocorum CIP 105476] gi|161018487|emb|CAK02045.1| Alanine racemase [Bartonella tribocorum CIP 105476] Length = 371 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 115/365 (31%), Positives = 176/365 (48%), Gaps = 14/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID++A+ N+ ++ +AVVK NAYGLG KIAPALY AG + FFV + E Sbjct: 18 ATIDVSAIVANYITLAKRVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIREA 77 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV--ISSVPQLTFYSKLMSCGVSHPYAL 126 + L+ P + L P + + I S + P + Sbjct: 78 LHLKSILPSNVMIALLNGLPHLAEEFVAQSGIVPVLNSWNAIENWQKICQKKDKKFPAIV 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E + + I+SHLA +D + N QL F+T++ Sbjct: 138 QIDTHMNRLGLDQKELQKLIKRPTIFENANIKYILSHLANGEDNTHPSNDAQLTSFKTIL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + AS A+S GI LG +++F L RPGI+LYG + ++ V+ EA+++ R Sbjct: 198 AQLPPCRASFANSGGIFLGSDFYFDLVRPGIALYGSDPSGKHASLLKPVLRLEAQVLQNR 257 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YG +R S +A +IGYADG+ LS G + GY Sbjct: 258 VVDIGTPVGYGETFITSRPSTLATISIGYADGWLRALSN-----------KGTVYFNGYK 306 Query: 307 VPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +P++G+++MD + D TD + GD+I++ GP L+ VA + T ++L +G+RY Sbjct: 307 LPMVGRVSMDSIIVDTTDLDQKPQTGDWIELIGPHQTLEKVATDANTLPNEILTSLGSRY 366 Query: 366 AKFYT 370 YT Sbjct: 367 RYIYT 371 >gi|154246344|ref|YP_001417302.1| alanine racemase [Xanthobacter autotrophicus Py2] gi|154160429|gb|ABS67645.1| alanine racemase [Xanthobacter autotrophicus Py2] Length = 357 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 208/361 (57%), Gaps = 11/361 (3%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL A+ +NW ++ AL+ A AAVVK NAYGLG +++AP L+ AG ++FFV +E V L Sbjct: 2 DLGAIADNWRTIAALAAPAECAAVVKANAYGLGIDRVAPVLWRAGARNFFVAHFKEAVAL 61 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQVDT 130 R P+A I+VL G+ P NL PV+ S P+++ +S GV P A+ VDT Sbjct: 62 RALLPEAIIYVLNGLLPDCAADYAAANLRPVLGSTPEISDWSDYCRDAGVKLPAAIHVDT 121 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 G +RLGLSL+EA+ +F SLI+SHLACAD P + + Q F ++ + Sbjct: 122 GMHRLGLSLEEAVQL-SGTFRLLGFTPSLIMSHLACADTPGHVLTARQRMVFADVVRRFP 180 Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALA 250 GI SLA+S+G LLG ++ F+L RPGI LYGG IN P++ VV E +++ + A A Sbjct: 181 GIPGSLANSAGTLLGRDFRFELVRPGIFLYGGI-AINGVPPLRPVVRLEVKVVQVSTAPA 239 Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310 GE V YG ++L R S +A +IGYADG D+ G + + G ++ Sbjct: 240 GETVGYGAAQRLKRPSRLATVSIGYADGLFRAGGSTDA------IKGVEAIVHGQRCHLV 293 Query: 311 GKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 G+++MD+ DITD ++ GD G I +DD+A SGT Y++L +G RYA+ Sbjct: 294 GRVSMDLATLDITDLPDGVVQRGDTAVFLGDGISVDDLAARSGTIGYEVLTSLGARYARH 353 Query: 369 Y 369 Y Sbjct: 354 Y 354 >gi|229009742|ref|ZP_04166965.1| Alanine racemase [Bacillus mycoides DSM 2048] gi|228751537|gb|EEM01340.1| Alanine racemase [Bacillus mycoides DSM 2048] Length = 389 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 152/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEYIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F + A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLRWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGY DG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYGDGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 K + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------KVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|160915859|ref|ZP_02078067.1| hypothetical protein EUBDOL_01881 [Eubacterium dolichum DSM 3991] gi|158432335|gb|EDP10624.1| hypothetical protein EUBDOL_01881 [Eubacterium dolichum DSM 3991] Length = 382 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 101/390 (25%), Positives = 160/390 (41%), Gaps = 31/390 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + SN L+I ++ +++N + L + +VK NAYG G A L G+ Sbjct: 2 LTSNTRSWLEIHVSRIEHNVAEIQKLLLGTNKIMGIVKANAYGHGDVVCAKELERIGIDF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V+SV+E + LR + I +L P ++ L I S+ + Sbjct: 62 FGVSSVDEALSLREGGISSPILILGYTPPVHFPLLKKYRLTQTILSLEYAKKLNAYALAH 121 Query: 120 -VSHPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSH-- 173 +++DTG +R+G+ Q K I SH +DD Sbjct: 122 DECIDVHVKLDTGMSRIGIVTQSHAYHIEEVKAVYALKGLHACGIFSHFPVSDDLGEDAQ 181 Query: 174 -VNSVQLERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK-- 225 Q+E F +++ GIE + +S GIL P+ + RPG+ G T Sbjct: 182 AFTKHQIELFEQVLADLKQAGIEVGLRHIQNSYGILNYPDLDYDYARPGLLWMGITSDDE 241 Query: 226 --INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 I + V+ +A + L++ G VSYG K + IA ++GYADGYP +L Sbjct: 242 IAIKTNPDFLPVMEWKANVSLVKTIEKGVTVSYGRHYKASETRRIATLSVGYADGYPRSL 301 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 S I G I+G I MD M D++D ++ GD +FG D Sbjct: 302 SNTH----------AYVLIHGKRAEIIGNICMDQMMVDVSDIEDVKEGDVATLFGCDGEE 351 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +D ++ + T N + L RI R + Y Sbjct: 352 CLSIDTLSRNAHTINNETLCRISARVPRIY 381 >gi|166999264|ref|ZP_02265105.1| alanine racemase [Burkholderia mallei PRL-20] gi|254179158|ref|ZP_04885810.1| alanine racemase [Burkholderia mallei ATCC 10399] gi|160694485|gb|EDP84495.1| alanine racemase [Burkholderia mallei ATCC 10399] gi|243064575|gb|EES46761.1| alanine racemase [Burkholderia mallei PRL-20] Length = 374 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+ + Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYEPMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|40063239|gb|AAR38066.1| alanine racemase [uncultured marine bacterium 577] Length = 357 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 96/367 (26%), Positives = 164/367 (44%), Gaps = 18/367 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + IDL+AL++N + S +R AV+K +AYG G + A A + F + Sbjct: 2 SRPIHALIDLSALEHNLSVVRRHSSRSRVMAVIKADAYGHGLLRAAEAFKS--ADGFAIL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E ++LR + I ++ G E +F+ + + Sbjct: 60 ELEAAIRLREAGYEHTILLIEGFFSRSELELFERYHLSTVIHNSWQLDMLSAYKQPRGLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERF 182 L+++TG NRLG + ++ L + + +++H ACAD QL+ F Sbjct: 120 VFLKLNTGMNRLGFTPEQFLRALEILKSNPVIGQITLMTHFACADAYKDRSGVIEQLKCF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239 ++ S SLA+S+ IL P H RPGI LYG + + S ++ +T Sbjct: 180 NSITSDL-DFPCSLANSAAILSYPETHADWVRPGIMLYGSSPFSDISASELDLRPAMTLT 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +RII ++ G+ V YG + R + + A GYADGYP G Sbjct: 239 SRIIAVQDLHTGDKVGYGQTYCVKRPMRVGIVAGGYADGYPRHA-----------PTGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G+++MDM D+T+ + VG + +G + +D+VA ++GT +Y+LL Sbjct: 288 ISVDGIRTRIIGRVSMDMLHVDLTNIENGGVGSLVIFWGKGMPVDEVAESAGTISYELLC 347 Query: 360 RIGTRYA 366 + R Sbjct: 348 SLAQRIK 354 >gi|229015642|ref|ZP_04172632.1| Alanine racemase [Bacillus cereus AH1273] gi|229021834|ref|ZP_04178410.1| Alanine racemase [Bacillus cereus AH1272] gi|228739474|gb|EEL89894.1| Alanine racemase [Bacillus cereus AH1272] gi|228745662|gb|EEL95674.1| Alanine racemase [Bacillus cereus AH1273] Length = 389 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEDAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKESGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGERVPIVGRVTMDQLMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|256032536|pdb|3E5P|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis gi|256032537|pdb|3E5P|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis gi|256032538|pdb|3E5P|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis gi|256032547|pdb|3E6E|A Chain A, Crystal Structure Of Alanine Racemase From E.Faecalis Complex With Cycloserine gi|256032548|pdb|3E6E|B Chain B, Crystal Structure Of Alanine Racemase From E.Faecalis Complex With Cycloserine gi|256032549|pdb|3E6E|C Chain C, Crystal Structure Of Alanine Racemase From E.Faecalis Complex With Cycloserine Length = 371 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID A+ N L AVVK N YG G + A A G F V Sbjct: 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 ++E ++LR Q I +L + ++ +L +++ L + + Sbjct: 66 ALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNT 125 Query: 121 SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG R+G + +E + K I +H + AD+ + Q Sbjct: 126 PLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQA 185 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---T 234 RF+ +++ + + + +S+ L P+ + R G+++YG NK P Sbjct: 186 GRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 246 ALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFT------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + G I+G++ MD M + + + VG + + G + L VA Sbjct: 299 -----VLVNGKRCEIVGRVCMDQCMIRL--AEEVPVGPVVTLVGKDGNEENTLQMVAEKL 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 352 ETIHYEVACTFSQRIPREY 370 >gi|86739335|ref|YP_479735.1| alanine racemase [Frankia sp. CcI3] gi|123724238|sp|Q2JFD6|ALR_FRASC RecName: Full=Alanine racemase gi|86566197|gb|ABD10006.1| alanine racemase [Frankia sp. CcI3] Length = 384 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 153/378 (40%), Gaps = 29/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A++ + ++ A +G+A T AVVK + YG G A A G +EE Sbjct: 18 AVIDLDAVRTSVTALVARAGDAATMAVVKADGYGHGMIPCARAALEGGATWLGTAFLEEA 77 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY-ALQ 127 + LR + ++ S+ L + L+ Sbjct: 78 LALRAAGFTVPVLSWLAAPGESFAAAIAADVDLSASAGWALEEAAAAARRTGRTARVHLK 137 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184 DTG R G + + + + ++ + SH A AD P Q+ RFR Sbjct: 138 ADTGLGRAGATEADWPALCDAGAALEAEGVIEVIGVWSHFAFADAPGHPTVQGQIGRFRD 197 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 I + LA+S+ L+ P HF L RPG+S+YG + + ++ Sbjct: 198 AIDIATKAGLHPSVRHLANSAATLVSPEAHFDLVRPGVSVYGLSPGPEIGPPAAFGLRPA 257 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T L ++ AG VSY + TR++ +AV +GYADG P + + Sbjct: 258 MTLTTHAALTKRVPAGTGVSYAHRYTTTRETTLAVVPLGYADGIPRSATNT--------- 308 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 + G I G + MD + D+ D + GD + +FGP + DD A A G Sbjct: 309 --AEVLFGGRRRRIAGTVCMDQFVLDVGDD-QVAAGDEVLLFGPGDRGEPTADDWAAALG 365 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+++ R+G R + Y Sbjct: 366 TINYEIVSRVGARVPRRY 383 >gi|289423534|ref|ZP_06425335.1| alanine racemase [Peptostreptococcus anaerobius 653-L] gi|289156036|gb|EFD04700.1| alanine racemase [Peptostreptococcus anaerobius 653-L] Length = 387 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 171/376 (45%), Gaps = 25/376 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++++L L+ N++ + + A+ V+K + YG G ++A + G F V+ Sbjct: 9 AWVEVNLDNLEFNYNELRKRVPDSAKMCMVIKADGYGHGAVELAKFYESIGADFFAVSRA 68 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +LR ++ I L + + + + +L I + +++ G Sbjct: 69 KEAKELRDAGVKSPILNLGVTLEDEYEYMVERDLSMTIFDYNVASKINEIAKSMGKVARL 128 Query: 125 ALQVDTGFNRLGLSLQEALDF----THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 +++DTG +R+G ++ LD+ + +L + +H A AD+ + ++QL Sbjct: 129 HIKLDTGMSRIGYVVEGRLDYVVGEIKKISQLENIRLEGMFTHFANADEANPEFKNIQLA 188 Query: 181 RFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQT 234 RF++++ IE S+S +L + F + RPG+ YG ++ K+ ++ Sbjct: 189 RFKSVVDSLEEEGIKIELIHCSNSAAILNDDDDFNMVRPGVIQYGVYPSDEVEKNVAIKP 248 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + R+ I++ +G V YG ++ IA IGYADG+ Sbjct: 249 VMSFKCRVANIKELGSGVSVGYGRNYFTSKTERIATITIGYADGFLRG------------ 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-KLDDVALASGTT 353 G +I G P+ G I MD TM + D L +++GD + +FG + ++DVA T Sbjct: 297 RKGAYVYINGQKCPVTGNICMDQTMVRLPDGLDVKIGDEVLLFGEEYVTVEDVARECSTI 356 Query: 354 NYDLLVRIGTRYAKFY 369 +++ I R + Y Sbjct: 357 VHEVWCNINRRVDRIY 372 >gi|242238192|ref|YP_002986373.1| alanine racemase [Dickeya dadantii Ech703] gi|242130249|gb|ACS84551.1| alanine racemase [Dickeya dadantii Ech703] Length = 358 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 165/372 (44%), Gaps = 22/372 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + +D +AL++N + ++ +R A+VK NAYG G + A + + Sbjct: 1 MKT---ATAVVDRSALRHNLQLIRQMAPQSRLIAIVKANAYGHGALEAARVFSD--ADGY 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ + E + LR I +L G E + + + + + + Sbjct: 56 GVSRLSEALALRAGGITKPILLLEGFFCADELPLLAEHQLETAVHCVEQLAALEQATLPH 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG +RLG+ A F S + Q ++SH AD+P QL Sbjct: 116 PLKVWMKLDTGMHRLGVLPAHAEAFYARLSSCANVVQPVNVMSHFCRADEPEFDTTRRQL 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VV 236 + F G + S+A+S GILL P H RPGI LYG + + + Sbjct: 176 DCFDAFTRGKPGAQ-SIAASGGILLWPEAHRDQIRPGIILYGVSPLGHGDAGQWQLKPAM 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +I +R+ AGE V YG TRD+ + V A+GY DGYP Sbjct: 235 TLTSHLIAVREHHAGEPVGYGSTWSSTRDTRLGVVAMGYGDGYPRGA-----------RS 283 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G +I G VP++G+++MDM D+ +VG+ + ++G + +++VA + + Y+ Sbjct: 284 GTPVWINGREVPLVGRVSMDMLTVDLGPDADDQVGNEVILWGGPLPVENVAAHNDISAYE 343 Query: 357 LLVRIGTRYAKF 368 L+ R+ R + Sbjct: 344 LITRLTAR-TRV 354 >gi|6708455|gb|AAF25943.1|AF214487_1 alanine racemase [Mycobacterium avium] Length = 391 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + + A+ AVVK + YG G + A A AG + V +V Sbjct: 16 LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 75 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + + + +SS Q + + G + Sbjct: 76 DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATV 135 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + + ++ ++SH+ AD P++ VN VQ +R Sbjct: 136 TVKVDTGLNRNGVPPAQYPSMLTALRRAVAEQAIVPRGLMSHMVYADQPANPVNDVQAQR 195 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F +++ + A L++SS + P+ F + RPGI++YG + + Sbjct: 196 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 255 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ +GYADG +L G Sbjct: 256 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 307 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 308 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 364 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 365 GTIHYEVVTSPRGRITRTY 383 >gi|206900696|ref|YP_002251207.1| alanine racemase [Dictyoglomus thermophilum H-6-12] gi|206739799|gb|ACI18857.1| alanine racemase [Dictyoglomus thermophilum H-6-12] Length = 378 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 160/375 (42%), Gaps = 28/375 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63 +IDL+AL NN + G AVVK +AYG G + ++ L A V F V Sbjct: 5 LAWREIDLSALLNNIKVIREKIGKKVDIIAVVKADAYGHGAKIVSLFLQKYANVNSFAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 ++EG+ LR +I VL + L PVIS + L S G Sbjct: 65 HIDEGIFLRKIGITKKILVLSPQLKSSIPYYLEYQLTPVISDIEFLEDLGKFSHSKGKEL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L DTG R GL E + L I SHL+ +++ N Q + F Sbjct: 125 KIHLMFDTGMGREGLLPSEVDKVLNVMEKYPGLILEGISSHLSNSENKKDPYNIFQKKLF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + +K E +++ GI P +HF RPGISLYG DK K V+ +A Sbjct: 185 YEIYDKFKDEELVFHFSNTGGIFNFPEFHFNAVRPGISLYGYGDKALKP-----VMEVKA 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I LI+ G + YG +++ IA+ +GYADGY LS G+ Sbjct: 240 KITLIKDLPEGWGIGYGHTFMTEKNTKIALVPLGYADGYRRDLSN-----------KGRV 288 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 + G I+G+I+MD D+TD + GD + I G + I ++A+ S T Y+ Sbjct: 289 ILNGEYCKIVGRISMDQFTIDVTD-KEAKKGDVVTILGMEKDKIIDAQELAIISNTIPYE 347 Query: 357 LLVRIG--TRYAKFY 369 +L G R Y Sbjct: 348 ILTGFGSAKRLKSVY 362 >gi|119503311|ref|ZP_01625395.1| alanine racemase [marine gamma proteobacterium HTCC2080] gi|119460957|gb|EAW42048.1| alanine racemase [marine gamma proteobacterium HTCC2080] Length = 355 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 102/365 (27%), Positives = 171/365 (46%), Gaps = 14/365 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL AL NN + L GN++ A VK NAYG G + + AL V F V Sbjct: 3 RPTSLSIDLNALSNNAATTRRLVGNSKILASVKANAYGHGLTRCSEALNQK-VDGFAVAF 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EE V LR + +L G ++ + ++ + +C ++ P Sbjct: 62 CEEAVLLRQQGITLPLLLLEGPFDREDVDAIKEYDLMMVVHSHHQIELLQKSACPLTSPV 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG +RLG S EA ++ +++++H ++P+S + Q ++T Sbjct: 122 WIKIDTGMHRLGFSPAEAPSVAQR-LHEMGASSTILMTHYGEGEEPASALTQEQQRAWQT 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 H S A+S+ I+ + RPGI LYG ++ V++ + ++ Sbjct: 181 ST-HSITSATSAANSAAIINTLAPNTDWMRPGIMLYGAAHSDPIGASLEAVMSFRSEVMA 239 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R LAG+ V YGG+ + RDS IA +GY DGYP G +++ Sbjct: 240 MRHILAGDTVGYGGRWRAQRDSTIATIPVGYGDGYPRGA-----------EDGTPVWLQH 288 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP++G+++MDM D+TD +G ++++G + +++VA SGT Y+LL R+ R Sbjct: 289 QCVPLVGRVSMDMITVDVTDFAGCHIGTSVELWGKHLSVNEVAKHSGTIGYELLTRLTGR 348 Query: 365 YAKFY 369 Y Sbjct: 349 VPVNY 353 >gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM 17393] gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM 17393] Length = 842 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 152/370 (41%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V V +E Sbjct: 484 LEVNLGAMIANLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 543 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR A I ++ K +FD L P + S L K + P Sbjct: 544 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 602 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + ++ ++ + SHL +D Q+E F Sbjct: 603 IKLDTGMHRLGFAPEDMPRLIERLKSQNAVIARSVFSHLVGSDASQFDAFTRGQIEMFEA 662 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +S+GI P F + R GI LYG + N + T + Sbjct: 663 ASMQLQAAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGISPIDNTIINNVS--TLK 720 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR+ + V Y + L RDS IA IGYADG L Sbjct: 721 TTILQIREVPEEDTVGYSRKGHLKRDSRIAALPIGYADGLNRHLGNGH----------AY 770 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD ++IFG + + ++ T Y++L Sbjct: 771 CLVNGQRAPYVGNICMDVCMIDVTDI-ECKEGDIVEIFGDHLPITVLSDVLETIPYEVLT 829 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 830 SVSTRVKRVY 839 >gi|229096607|ref|ZP_04227578.1| Alanine racemase [Bacillus cereus Rock3-29] gi|229115582|ref|ZP_04244988.1| Alanine racemase [Bacillus cereus Rock1-3] gi|228667995|gb|EEL23431.1| Alanine racemase [Bacillus cereus Rock1-3] gi|228686813|gb|EEL40720.1| Alanine racemase [Bacillus cereus Rock3-29] Length = 408 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 161/376 (42%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AGV V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKHVNDENIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + +++ + + L +++ Sbjct: 88 EAIELREAGITVPILILGYTSVAAAESAIQYDVMMTVYRIEDLQGINEIAQRLQNKARIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ + + +S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTANELGMQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHATKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D+T ++ ++VGD + +G I +++VA T Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDDVVFYGKQGEEEIAVEEVADMLSTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|82919488|gb|ABB95691.1| D-alanine racemase [Bacillus subtilis] Length = 370 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 163/374 (43%), Gaps = 27/374 (7%) Query: 8 RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +IDL+A+K N +M G + AVVK NAYG G + A A +AG V ++ Sbjct: 1 WAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANAYGHGDAETAKAALDAGASCLAVAILD 60 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR +A I VL + P I + ++ SV L ++ G S + L Sbjct: 61 EAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHTKKG-SLHFHL 119 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VDTG NRLG+ +E + ++ + + +H A AD+ +Q ERF+ L Sbjct: 120 KVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYFLMQFERFKEL 179 Query: 186 ISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV----TAE 239 I+ + A+S+ L F R GI +YG + S + + T Sbjct: 180 IAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIPFQLRPAFTLH 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ GE VSYG + +D+ I +GYADG+ L G D Sbjct: 240 STLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI----------- 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 +KG + I G+I MD M ++ G + + G I +D++A T NY Sbjct: 289 -LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDEIAGRLETINY 345 Query: 356 DLLVRIGTRYAKFY 369 ++ I +R + + Sbjct: 346 EVACTISSRVPRMF 359 >gi|269128462|ref|YP_003301832.1| alanine racemase [Thermomonospora curvata DSM 43183] gi|268313420|gb|ACY99794.1| alanine racemase [Thermomonospora curvata DSM 43183] Length = 375 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 159/381 (41%), Gaps = 26/381 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E ++ ++DL A++ N + +G A T A+VK YG G + A A G V Sbjct: 2 REPVQARVDLDAIRANVALLRERAGGAETMAMVKAEGYGHGLVEAARAALEGGAGWLGVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 V E ++LR + V+ + + S Q ++ G Sbjct: 62 RVAEALRLRAAGITVPVLVVMATRGEPFEEAVAAGVDLTAGSGWQARRLAEAAERAGRPA 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNSVQL 179 L+ DTG +R G ++ + + + ++SHLACAD+P + QL Sbjct: 122 RVHLKADTGMSRGGATMADWPATVEAALAAQAAGHLRVVGVMSHLACADEPGHPSIARQL 181 Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQ 233 F+ + + + L++S+ L P + L RPGI++YG T + ++ Sbjct: 182 AVFKEAVEYAEKAGVRPQVRHLSNSAATLTLPEARYDLVRPGIAIYGLTPVPQMGTFGLR 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A + +++ AG VSYG R++ + + A GY DG P S L + Sbjct: 242 PAMTLVAELAAVKRVPAGSGVSYGHTYVTERETTLGLVAAGYGDGVPRHGSSLLEVLAGG 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G + MD + D+ D + G+ + +FGP + + A A Sbjct: 302 RRRRIAGR-----------VCMDQFVIDLGDD-TASPGEEVLLFGPGDHGEPTAQEWAQA 349 Query: 350 SGTTNYDLLVRIGTRYAKFYT 370 GT +Y+++ RIGTR + Y+ Sbjct: 350 LGTISYEIVTRIGTRVPRVYS 370 >gi|240851017|ref|YP_002972417.1| alanine racemase [Bartonella grahamii as4aup] gi|240268140|gb|ACS51728.1| alanine racemase [Bartonella grahamii as4aup] Length = 371 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 14/365 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID++A+ N+ ++ + +AVVK NAYGLG KIAPALY AG + FFV + E Sbjct: 18 ATIDVSAIVANYITLAKRVAPTQCSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIIEA 77 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126 ++L+ P I VL G+ E+ + + ++PV++S + + P + Sbjct: 78 LQLKSILPSHVTIAVLNGLPHLAEEFVAQSGIVPVLNSWSAIENWQKICQKKDKKFPAIV 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DT NRLGL +E + + ++ I+SHL+ +D + N QL F+T++ Sbjct: 138 QIDTHMNRLGLDQKELQKLIKHPTIFEKAEIKYILSHLSNGEDDTHPSNYAQLATFKTVL 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + S A+S GI LG +++F L RPGI+LYG + P++ V+ EA++I R Sbjct: 198 AQLPACKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPRGKHPSPLKPVLKLEAQVIQNR 257 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YG R S +A +IGYADG+ LS G + GY Sbjct: 258 VVDIGTPVGYGESFITNRPSTLATISIGYADGWLRALSN-----------KGTVYFNGYK 306 Query: 307 VPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +P++G+++MD + D TD + GD++++ GP L+ V++ + T ++L +G+RY Sbjct: 307 LPMVGRVSMDSIIVDTTDLDQKPQTGDWVELIGPHQTLERVSIDADTLPNEILTSLGSRY 366 Query: 366 AKFYT 370 YT Sbjct: 367 KYIYT 371 >gi|226313784|ref|YP_002773678.1| alanine racemase [Brevibacillus brevis NBRC 100599] gi|226096732|dbj|BAH45174.1| alanine racemase [Brevibacillus brevis NBRC 100599] Length = 393 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 151/384 (39%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++++L A+K N S+ + AVVK NAYG G +A G V Sbjct: 6 RETWIEVNLDAIKKNIQSIRRHIPKQTKIMAVVKANAYGHGSVGVARHALEYGATSLAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120 +EEG+ LR A I VL + K N+ + K++ Sbjct: 66 ILEEGIVLRKAGIVAPILVLGFTPLSRVKEAIAWNIELSAFQADWIKKADKIIKSTAFTN 125 Query: 121 SHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + +DTG RLG+ + A L + + I +H + AD+P + Q Sbjct: 126 RLNIHINIDTGMGRLGVRTKSALLSVVTALTSSSSLAWTGIFTHFSTADEPDHTLTKAQH 185 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSH 230 E F + + K + +++ + P Y + R GI +YG Sbjct: 186 ELFVQYLRYLKERGFELPTVHMCNTAATIAFPEYSADMIRLGIGMYGLYPSAYIRQLNRV 245 Query: 231 PMQTVVTAEARIILIRKA-LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ ++R ++ +SYG R +I IGYADGY LS Sbjct: 246 KLVPALSLKSRFSYVKTMLTPPFTISYGATYIAKRGEVIGTVPIGYADGYSRALSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G +PI G++TMD M + + + GD + I+G +I +D+ Sbjct: 303 --------GFVLYQGRRLPIAGRVTMDQMMVSLGEGSG-KQGDEVVIYGKQGNREIPVDE 353 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY+++ + R + + Sbjct: 354 IAEMLGTINYEVVATLSNRIPRLF 377 >gi|125717409|ref|YP_001034542.1| alanine racemase [Streptococcus sanguinis SK36] gi|125497326|gb|ABN43992.1| Alanine racemase, putative [Streptococcus sanguinis SK36] Length = 369 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 146/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQKTEKWAVVKANAYGHGAIEVSKH-IDPLVDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ + QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEVDHYKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I + DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITVTDVAEKLGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|310640776|ref|YP_003945534.1| alanine racemase [Paenibacillus polymyxa SC2] gi|309245726|gb|ADO55293.1| Alanine racemase [Paenibacillus polymyxa SC2] Length = 398 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 97/390 (24%), Positives = 166/390 (42%), Gaps = 32/390 (8%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSGNARTAAV-VKDNAYGLGCEKIAPALYNAGVQ 58 M + R +I+L L N+ + + + V VK NAYG G +I+ + G Sbjct: 1 MQAQYRSTRAEINLDHLGANYEAFRKVLPADKLILVCVKANAYGHGAVEISKEMERLGAD 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V ++E ++LR + I VL P + ++ ++ + S L +L Sbjct: 61 YLSVAFLDEALELRHAGIELPILVLGYTSPEAVQTAWEHDISLTVFSEEVLEGIRRLDRQ 120 Query: 119 G--VSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G +++D+G RLGL E AL F + + L + +H A AD+ Sbjct: 121 GSERKLKVHIKIDSGMGRLGLLPGEAALAFVRQAHELEQVLLEGMYTHFARADEEDKSYT 180 Query: 176 SVQLERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 +Q +RFR + +GI + +S+ + P+ + R GIS+YG + Sbjct: 181 LLQYDRFRGVADALREQGITIPIIHTGNSAATIDTPSLSPNMVRIGISIYGLYPSDEVNR 240 Query: 231 PMQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + V++ + ++ + G VSYG + + + I IGYADGY LSG Sbjct: 241 QVIELLPVLSLKTAVVYTKTLPPGWGVSYGTRYVTSSEERIGTLPIGYADGYSRMLSGKV 300 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGPD--- 340 + I+G VP+LG I MD M + D+ I+ G+ + + G Sbjct: 301 -----------EVLIRGRRVPVLGTICMDQCMVSLQSFAEDAEEIQTGEEVVLIGQQSGE 349 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I D++A GT +Y+++ I R + Y Sbjct: 350 IIAADELASKLGTIHYEVICMIADRVPRVY 379 >gi|262041903|ref|ZP_06015086.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040709|gb|EEW41797.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 356 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL+ N + + +R AVVK NAYG G ++ AL F + + Sbjct: 3 RPVVASIDLLALRQNLQIVRRAAPGSRLWAVVKANAYGHGVARVWSALSA--ADGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + D + + Sbjct: 61 LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLTTSVHSNWQIKALQQAKLRAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A++P V ++ Sbjct: 121 YLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---E 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SLA+S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ GE + YGG + T++ I + A GYADGYP G Sbjct: 238 EIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYP-----------QVAPSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +G ++++G +IK+DDVA +SGT Y+L+ Sbjct: 287 LVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|313638720|gb|EFS03820.1| alanine racemase [Listeria seeligeri FSL S4-171] Length = 368 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 149/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N L N +VVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRCAIRENIKNEQKKLPKNVAVWSVVKANAYGHGIIEVAKTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAHNNI---SLTIFREDWLDGVHLETPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++D+G RLG+ +EA + L +H A AD + QL + Sbjct: 123 KVHLKIDSGMGRLGIRSAEEAEQIEAKIVQTDMFFLEGAYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 F ++ K + +S+ LL F R GIS+YG T I N ++ Sbjct: 183 FDAILKGLKSRPRFVHAANSAAALLQSQIGFDAVRFGISMYGLTPSIEIKSNLPFKLKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ ++K G+ VSYG T IA IGYADG SG Sbjct: 243 LALYTEMVHVKKLAPGDSVSYGATYTATEREWIATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + + G PI+G++ MD T+ + + G + I G D + DD A Sbjct: 294 ---QVLVDGKKAPIIGRVCMDQTIIKLP--YEFQTGTKVTIIGTDHGNSVTADDAAKYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLTERIPRKY 366 >gi|260549412|ref|ZP_05823631.1| alanine racemase 1 [Acinetobacter sp. RUH2624] gi|260407521|gb|EEX00995.1| alanine racemase 1 [Acinetobacter sp. RUH2624] Length = 356 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 171/363 (47%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E + + VI Q + K ++ ++ Sbjct: 66 IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKNPEVIEIIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + + AS +S+ I P +F RPGI LYG + +K ++ V+T A +I Sbjct: 183 ACEPVLASCCNSAAIFKWPEMNFDYVRPGIMLYGASPFADKTVHELDLKPVMTFTAEVIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I G Sbjct: 243 LNHIQAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ TR Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSTR 350 Query: 365 YAK 367 + Sbjct: 351 PVR 353 >gi|224826682|ref|ZP_03699783.1| alanine racemase [Lutiella nitroferrum 2002] gi|224601283|gb|EEG07465.1| alanine racemase [Lutiella nitroferrum 2002] Length = 355 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I L ++N+ G R AVVK NAYG G + A A+ + + V Sbjct: 2 RPLIASIRLEHFRHNYELARRQHGG-RALAVVKANAYGHGAVRCAQAVADI-ADGYAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR I +L G+ E + + + ++ Q + Sbjct: 60 LEEALQLREAGLTLPILLLEGVFEAAELREVEQHGLWLVVQSQQQLDMLLASQPAKPYRV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G Q+ + ++H A AD+P+ + Q+E F Sbjct: 120 WLKMDSGMHRAGFFPQDYAAAYQRLAESGKVDGIVKMTHFARADEPALSATAQQMETFDA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 + G E S+A+S+ I++ RPGI LYG T + ++ V+ +R Sbjct: 180 ACAGLPG-EVSVANSAAIMVHERTRRDWGRPGIMLYGATPLPAGYAQDAALKPVMRLTSR 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + +R+ AGE V YG R + + + A GYADGYP S G Sbjct: 239 VFGVRELAAGEPVGYGATFVTERPTRVGLIACGYADGYPRLAS-----------TGSPVA 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G + I+G+++MDM D+TD + +G ++++G + +++VA +GT Y+LL + Sbjct: 288 IDGVRLRIIGRVSMDMITVDLTDLPAAGIGSEVELWGDSVNVNEVAAQAGTIAYELLCNV 347 Query: 362 GTRYAKFY 369 R Y Sbjct: 348 -KRAHFVY 354 >gi|239501434|ref|ZP_04660744.1| alanine racemase [Acinetobacter baumannii AB900] Length = 356 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 169/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID A + N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRQAFQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E + + VI Q + K ++ ++ Sbjct: 66 IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHIKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I G Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ +R Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350 Query: 365 YAK 367 + Sbjct: 351 PVR 353 >gi|47094893|ref|ZP_00232507.1| alanine racemase [Listeria monocytogenes str. 1/2a F6854] gi|254898941|ref|ZP_05258865.1| hypothetical protein LmonJ_03970 [Listeria monocytogenes J0161] gi|254911571|ref|ZP_05261583.1| alanine racemase [Listeria monocytogenes J2818] gi|254935897|ref|ZP_05267594.1| alanine racemase [Listeria monocytogenes F6900] gi|47016775|gb|EAL07694.1| alanine racemase [Listeria monocytogenes str. 1/2a F6854] gi|258608485|gb|EEW21093.1| alanine racemase [Listeria monocytogenes F6900] gi|293589517|gb|EFF97851.1| alanine racemase [Listeria monocytogenes J2818] Length = 368 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + + AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA S N QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNVITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|229102703|ref|ZP_04233403.1| Alanine racemase [Bacillus cereus Rock3-28] gi|228680711|gb|EEL34888.1| Alanine racemase [Bacillus cereus Rock3-28] Length = 408 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 162/376 (43%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A+K+N + A VK N YG G ++A A AGV V V+ Sbjct: 28 VEVDLNAVKHNVKEFKKHVNDENIAMMAAVKANGYGHGAVEVAKAGIEAGVNQLAVAFVD 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E ++LR I +L + +++ + + L +++ Sbjct: 88 EAIELREAGITVPILILGYTSVAAAESAIQYDVMMTVYRIEDLQGINEIAQRLQNKARIQ 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++DTG +R+GL +E F + ++ + +H + AD+ ++Q F Sbjct: 148 VKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSLFEKA 207 Query: 186 ISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVT 237 ++ + + +S+G + N + R GI +YG H +Q ++ Sbjct: 208 VNTANELGMQIPYIHSSNSAGSMELSNTFQNMVRVGIGVYGMYPSKEVDHTVVSLQPALS 267 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++++ ++ A VSYG T + IA IGYADGY LS Sbjct: 268 LKSKVAHVKHATKNRGVSYGNTYVTTGEEWIATVPIGYADGYNRQLSN-----------K 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G VP++G++ MD M D+T ++ ++VGD + +G I +++VA GT Sbjct: 317 GYALINGVRVPVIGRVCMDQLMLDVTKAMPVQVGDDVVFYGKQGEEEIAVEEVADMLGTI 376 Query: 354 NYDLLVRIGTRYAKFY 369 NY++ + R + Y Sbjct: 377 NYEVTCMLDRRIPRVY 392 >gi|170733394|ref|YP_001765341.1| alanine racemase [Burkholderia cenocepacia MC0-3] gi|169816636|gb|ACA91219.1| alanine racemase [Burkholderia cenocepacia MC0-3] Length = 356 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 148/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G + P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYVPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAESIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T V ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVSARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAARVP 352 >gi|325696971|gb|EGD38858.1| alanine racemase [Streptococcus sanguinis SK160] Length = 369 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 146/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEKDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLKLPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + S + G + + G I + DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|254442146|ref|ZP_05055622.1| alanine racemase [Verrucomicrobiae bacterium DG1235] gi|198256454|gb|EDY80762.1| alanine racemase [Verrucomicrobiae bacterium DG1235] Length = 385 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 106/382 (27%), Positives = 173/382 (45%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDL AL+ N +++ AL R AVVK +AYG G + L AG+ + V Sbjct: 9 RRCWAEIDLAALERNLNAIKNALPPRIRYIAVVKADAYGHGMHQTVARLMQAGIDMYGVA 68 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VS 121 +V E +R ++ G + + +F+ +LIP +SSV ++ F L + Sbjct: 69 NVAEAATIREIGGSGWSILILGATLREEAQFLFEYDLIPTLSSVEEVRFLDDLAEKRDAN 128 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG RLG+ ++A + K +L I +H + A+ Q R Sbjct: 129 LRVHIKVDTGMGRLGIWHEDADELFEAMRTAKRLKLDGIYTHFSHAETDV-EFTERQRRR 187 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGP-NYHFQLTRPGISLYGGTD---KINKSHPM 232 F T I+ I +S+G+ + R G+ +G T + P Sbjct: 188 FMTAITRVNWINPAELLIHADNSAGLTSFSRESAYNAVRIGLLQFGITPYAQSLFAKVPT 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + + RI L+++ AG VSYG +L R+S +A+ GY DG P +LS Sbjct: 248 NPIFSFKTRISLVKRLPAGTEVSYGRTCRLKRESRVAILCAGYGDGIPRSLSN------- 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF----GPDIKLDDVA 347 G I+G P LG++TMD T+ D+TD S + GD + G +IK++ A Sbjct: 301 ----KGFALIQGKRCPYLGRVTMDQTIIDVTDLEVSPQAGDEACLIGFQDGGEIKVEQFA 356 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 +GT ++++L I R + Y Sbjct: 357 RWAGTISWEILCSITKRVPRIY 378 >gi|261363843|ref|ZP_05976726.1| alanine racemase [Neisseria mucosa ATCC 25996] gi|288568436|gb|EFC89996.1| alanine racemase [Neisseria mucosa ATCC 25996] Length = 352 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L++N+ ++ + G + AV+K +AYG G + A AL F V + Sbjct: 2 RPLNARIRLDNLRHNYQTLKQIHGG-KMLAVIKADAYGHGAVRCAHALSEI-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+E V+LR I +L G+ E D + Sbjct: 60 VDEAVELRESGITNPIVLLEGVFEAAEYATVDKYNLWPGVGSQWQLEALIAHHWQNPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G K + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYTSAYTALKQCKHVDSIVKFSHFACADEPDNGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R V YG ++ + + + A GYADGYP S ++G Sbjct: 239 ERVLQPHSPVGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVEG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ D+ +G ++++G + +++VA A+G Y++L + R Sbjct: 288 KRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYEILCNV-KR 345 Query: 365 YAKFYT 370 Y+ Sbjct: 346 AKFTYS 351 >gi|34499248|ref|NP_903463.1| alanine racemase [Chromobacterium violaceum ATCC 12472] gi|34105099|gb|AAQ61455.1| alanine racemase [Chromobacterium violaceum ATCC 12472] Length = 357 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +RL+I L A+++N+ S AV+K NAYG G A AL + F + + Sbjct: 3 RPIRLEISLPAIRHNFLFTRQHSQARSLFAVIKANAYGHGLLDTAKALADQ-ADGFALLN 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E+ V+LR I +L G E + Q + S Sbjct: 62 IEDAVRLREAGFDHPISLLEGPFDAAEAAAMADYRLGGAVHSQQQMDWLAKGSADRPIDV 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG QEA +L+ +++H A AD+ + Q RF Sbjct: 122 WLKINSGMNRLGFRPQEAAAAQARLQALPGARLTAVMTHFATADEDYG--VAEQWARFEP 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 ++ G++ A+S+ +L P+ H + RPGI LYG + N++ + +T A Sbjct: 180 -VAVASGLKVCAANSAALLRHPHTHGDIGRPGIVLYGASPFENETGAGLGLMPAMTLSAD 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +++ G+ V YG + R I V A GYADGYP + G Sbjct: 239 IIAVQQLQPGDAVGYGRRFIADRAMRIGVVACGYADGYPRVAAN-----------GAPAA 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + G+++MDM DI+ VG ++++GP+ ++ VA A+GT +Y+L+ + Sbjct: 288 VDGQPCRLAGRVSMDMLTVDISHLPQAGVGSRVELWGPNAPIEKVAAAAGTISYELMSAV 347 Query: 362 GTRYAKF 368 R + Sbjct: 348 MPRVPRV 354 >gi|150017611|ref|YP_001309865.1| alanine racemase [Clostridium beijerinckii NCIMB 8052] gi|149904076|gb|ABR34909.1| alanine racemase [Clostridium beijerinckii NCIMB 8052] Length = 376 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 161/376 (42%), Gaps = 27/376 (7%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 KIDL A+ +N + N + A++K + YG G ++ L + V + V ++EE Sbjct: 9 AKIDLEAILHNINEAKKRIERNVKIMAIIKADGYGHGAAELGDFLKSE-VDYYGVATLEE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 ++LR + I +L P Q +++ + V ++ C + Sbjct: 68 ALELRKSGIELPILILGYTSPSQYIEVVKNNITQTVYNTEMAKEMSKAGAICKKEAKVHI 127 Query: 127 QVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG R+G E + + + +H A AD+ + +Q+ ++ Sbjct: 128 ALDTGMTRIGFDANEDGIAEVQEILTFSNLVVEGLFTHFATADEADKSYSKLQISKYDKF 187 Query: 186 IS----HYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237 ++ I + +S+GI+ ++ F + R GI YG + + Sbjct: 188 VALLEERDINIPIKHMCNSAGIMEFDHHRFDMVRCGIITYGLYPSEEVNKNAITLKPALQ 247 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I + AG VSYG ++ IA ++GYADGYP LS Sbjct: 248 WKTHVINVNIVDAGHGVSYGKTYITKNETKIATLSVGYADGYPRALS-----------SK 296 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G+ I G PI+G+I MD M D+T ++++ D + + G D I ++++A +G+ Sbjct: 297 GRVLIHGKYAPIIGRICMDQMMVDVTHIDNVKIEDEVTLVGKDGENIIYVEELANMAGSF 356 Query: 354 NYDLLVRIGTRYAKFY 369 NY+ + IG R + Y Sbjct: 357 NYEFVCGIGKRVQRLY 372 >gi|119945753|ref|YP_943433.1| alanine racemase [Psychromonas ingrahamii 37] gi|119864357|gb|ABM03834.1| alanine racemase [Psychromonas ingrahamii 37] Length = 375 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 149/380 (39%), Gaps = 24/380 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R I L L +N + +G +K NAYG E IA L + G Sbjct: 4 KNTHLTRAIIHLDHLTHNMKVLQKKAGKRPLFPAIKANAYGHDAEIIAKHLISLGYTTLC 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-V 120 + E +L A +L + D + P++SS QL ++ Sbjct: 64 TAHLSEAAELVEKGVNATFIILSPTLAENSDYLLDYDFQPIVSSQVQLQALAQAARRRDK 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++VDTG R+G+ + L F + + + SH AD+ + + Q+ Sbjct: 124 QITIHVKVDTGMGRMGVRPDQLLMFLDECKAQPEIIIGGVCSHFPRADENNLSFSKTQIN 183 Query: 181 RF---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----Q 233 F + Y +A+S+ + H RPGIS+YG ++ P + Sbjct: 184 TFTALKKETKAYNIPLYHIANSAALFALEEAHLDAIRPGISIYGLKPSVSMVVPELNDLK 243 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +++ +RI L+++ + +SYG + SLIA IGY DG +LS Sbjct: 244 PIMSLVSRITLLKEVVQDTGISYGHLHYTDKPSLIATIPIGYGDGLSRSLSNRI------ 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDDVAL 348 + I +G I MD M D+T + +GD + I G I DD+A Sbjct: 298 -----EVLIGNERCRQIGNICMDQCMIDVTQLRGKVSIGDEVVIIGTQGSETITADDLAK 352 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 T NY+++ I +R + Sbjct: 353 KQHTVNYEIVTAISSRVPRI 372 >gi|229131246|ref|ZP_04260152.1| Alanine racemase [Bacillus cereus BDRD-ST196] gi|228652237|gb|EEL08168.1| Alanine racemase [Bacillus cereus BDRD-ST196] Length = 389 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 152/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEYIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDVNVAAENDVALTVFQKEWVEEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSIMKFHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F + A+S+ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLRWLKEFGVNPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGY DG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTRTEEWIATVAIGYGDGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGERVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|254501958|ref|ZP_05114109.1| alanine racemase [Labrenzia alexandrii DFL-11] gi|222438029|gb|EEE44708.1| alanine racemase [Labrenzia alexandrii DFL-11] Length = 380 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 135/366 (36%), Positives = 196/366 (53%), Gaps = 10/366 (2%) Query: 8 RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL +DL A+ NW + L+ + AA +K NAYG G + A L+ G + FFV Sbjct: 17 RLTVDLDAIAANWSLLRSRLAPGSECAATIKANAYGTGQAETAKRLFEEGCRTFFVAVPT 76 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR P A I+ L G+ P ++ ++ PV+ S+ + + + + S P A Sbjct: 77 EAMALRQTLPSATIYALDGLFPDTADLLLQHDVRPVLGSLDELKEWAALCRTARKSFPAA 136 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + VDTG +RLGLS E + + SL +SHLAC DP +N QL RF L Sbjct: 137 VHVDTGIHRLGLSGDEFGTALADLELMGPFKPSLFMSHLACGSDPDHPMNQEQLARFTEL 196 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 S +KG+ SLA+S+G+L+GP+YHF L RPGISLYGG + +PMQ V EARI+++ Sbjct: 197 TSPFKGVPRSLANSAGVLMGPDYHFDLVRPGISLYGGRAFDHGDNPMQPVAKVEARIMIV 256 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G+ + YG + R AV A GYADG S D GG G I G+ Sbjct: 257 RNVPKGDAIGYGATQTAKRALRNAVVAAGYADGLLRRASSSDDR------PGGFGMIGGH 310 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 ILG+I+MDM D+TD ++ G +++ GP++ D+A + T +Y+ L +G Sbjct: 311 KASILGRISMDMITLDVTDIPEHLVQRGGLVEMLGPNVAAADMAAYAETIDYEYLTSLGR 370 Query: 364 RYAKFY 369 R+ + Y Sbjct: 371 RFERIY 376 >gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC 43183] gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC 43183] Length = 843 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 150/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V V +E Sbjct: 485 LEVNLGAMIANLNHYRGKLKPETKMVCMVKASAYGAGSYEIARTLQEHHVDYLAVAVADE 544 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + S L K + P Sbjct: 545 GSDLRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 603 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + ++ + + SH +D Q+E F Sbjct: 604 VKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAQQFDAFTRKQIETFEK 663 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +S+GI P F + R GI LYG + N M V T + Sbjct: 664 ASMLLQEAFPYKILRHICNSAGIERFPGAQFDMVRLGIGLYGISPIDN--SIMHNVSTLK 721 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + LTR S IA IGYADG L Sbjct: 722 TTILQIRDVPEEDTVGYSRKGHLTRPSRIAAIPIGYADGLNRHLGNGH----------AY 771 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD ++IFG + + ++ GT Y++L Sbjct: 772 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLGTIPYEVLT 830 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 831 NVSTRVKRVY 840 >gi|302536293|ref|ZP_07288635.1| alanine racemase [Streptomyces sp. C] gi|302445188|gb|EFL17004.1| alanine racemase [Streptomyces sp. C] Length = 378 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 161/378 (42%), Gaps = 29/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL A+++N ++ A + A A+VK NAYG G + A A AG + EE Sbjct: 10 AEIDLDAVRDNVRALRARAPRAELMAIVKSNAYGHGAVQCARAAQEAGAGWLGTATPEEA 69 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 + LR + RI G + + +L +S + + + G L+ Sbjct: 70 LALRDAGIRGRIMCWLWTPGGPWREAVEADLDVSVSGMWALDEVRAAARAAGRPARIQLK 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRT 184 DTG R G + + + + + SH ACAD+P +QL+ FR Sbjct: 130 ADTGLGRNGCQPADWAELVGAAVAAQAEGTVRVTGVWSHFACADEPGHPSIRLQLDAFRD 189 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235 +++ +A+S L P HF L R GI++YG + P Q Sbjct: 190 MLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGIAVYGVSPSPELGTPAQLGLRPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T +A + L++ AG VSYG ++ +A+ GYADG P SG Sbjct: 250 MTLKASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + G + G+I MD + D+ + L E GD IFG + +D A A+G Sbjct: 301 --GPVLVAGKVRRAAGRIAMDQFVVDLGEDL-AEAGDEAVIFGDAERGEPTAEDWAQAAG 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ RIG R + Y Sbjct: 358 TIAYEIVTRIGGRVPRVY 375 >gi|224499424|ref|ZP_03667773.1| hypothetical protein LmonF1_06877 [Listeria monocytogenes Finland 1988] Length = 368 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + + AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA S N QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELTPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|325981463|ref|YP_004293865.1| alanine racemase [Nitrosomonas sp. AL212] gi|325530982|gb|ADZ25703.1| alanine racemase [Nitrosomonas sp. AL212] Length = 360 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 172/371 (46%), Gaps = 21/371 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ ID +AL +N + + +AR AV+K NAYG G A AL N V F + Sbjct: 2 SRPIQAIIDHSALTHNLTIVRQYAPSARILAVLKANAYGHGLLHTANALKN--VDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + LR + I +L G + +I L VI Q++ S Sbjct: 60 ELDAAITLRTAGYKQPILLLEGFFSTKEIALIEQYQLSAVIHHTEQVSMLSDFK--NHKM 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQLER 181 ++V+TG NRLGLS ++ N + + +++H A ADDPS + QL+ Sbjct: 118 DIFIKVNTGMNRLGLSPKQLPQVIKELTNDQHVKNITLMTHFASADDPSEKASVLRQLQC 177 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTA 238 F T I+ SLA+S+ I+ P H RPGI LYG + +K + V+T Sbjct: 178 FET-ITETYNYPCSLANSAAIVNYPETHSDWVRPGIMLYGASPFPDKTAADLNLLPVMTL 236 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++II + G+ V Y G I + A GYADGYP G Sbjct: 237 SSKIIAMHDLEPGDKVGYHGLFTADDRIRIGIVACGYADGYPRHA-----------PTGT 285 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 I +LG+I+MDM D+T+ + ++GD + ++G + ++++A +GT++Y LL Sbjct: 286 PILINNQRSRLLGRISMDMLAIDLTEVENTKLGDPVVLWGKGMPVEEIAGYAGTSSYQLL 345 Query: 359 VRIGTRYAKFY 369 + R + + Sbjct: 346 CGLSARVDRKF 356 >gi|237746074|ref|ZP_04576554.1| alanine racemase [Oxalobacter formigenes HOxBLS] gi|229377425|gb|EEO27516.1| alanine racemase [Oxalobacter formigenes HOxBLS] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 156/369 (42%), Gaps = 21/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ID+ A+++N + + A+ AVVK NAYG G E+ A + F + Sbjct: 3 RPLVASIDIAAMQHNLSLVRSTVPRAKIWAVVKANAYGHGLERSVRAFSD--ADGFALIE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E + LR + I +L G P + + N+ + Q+ K + Sbjct: 61 IEAAIHLREIGWKKPILLLEGFFYPHELPTLARYNIAFAVHCDEQIDMLEKSR-LDMPVD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--VNSVQLER 181 L+++TG NRLG E + ++H A ++ QL R Sbjct: 120 VHLKMNTGMNRLGFLPSEYGKALERLKKIPNVRDISYMTHFANSEAKKHPLLSVKEQLRR 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAE 239 F + KG + +L++S ILL P RPGI LYGGT K + ++ +T Sbjct: 180 FDSATQGLKG-DRNLSNSGAILLHPEIRTDWVRPGIMLYGGTPGGKTAAEYGLEPAMTLS 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I+ G+ + YG V A GYADGYP G Sbjct: 239 SEIIQIQHIREGDSIGYGSIFTAKGPMKTGVVACGYADGYPRMA-----------PEGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+T VG + ++G ++ +D+VA A+GT Y+L+ Sbjct: 288 IMVDGVKTRLVGRVSMDMITVDLTPVPDAHVGSKVTLWGKELPIDEVAEAAGTVGYELMC 347 Query: 360 RIGTRYAKF 368 + R + Sbjct: 348 ALSLR-PRI 355 >gi|148261853|ref|YP_001235980.1| alanine racemase [Acidiphilium cryptum JF-5] gi|226711024|sp|A5G2H9|ALR_ACICJ RecName: Full=Alanine racemase gi|146403534|gb|ABQ32061.1| alanine racemase [Acidiphilium cryptum JF-5] Length = 357 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 189/364 (51%), Gaps = 12/364 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ID A+ NW ++ A A VVK +AYGLG IAPAL AG + FFV + Sbjct: 2 NHPTLTIDPGAVAANWQALAARHTG-EVAGVVKADAYGLGAALIAPALAAAGCRSFFVAT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR P ARI VL G PG+E + L PV+ S+ + + P Sbjct: 61 LDEALSLRALLPAARIGVLNGCPPGEEGTMRARELRPVLGSLAACARWRGAAGDDKAPPS 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +DTG NRLGL EA + L+ +++HL A++P + N+ Q ERF Sbjct: 121 FLHLDTGMNRLGLDRDEAAHLIAHPTLLDGLGLTHVMTHLVAAEEPDASANAAQRERFAA 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + + + SLA+SSG+ LGP + L RPG +LYGG ++PM+ + A I+ Sbjct: 181 FAARFPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPTAANPMRPAIALAAPILQ 240 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 IR +GE V Y G + R S IA +GYADG P +LS + +G Sbjct: 241 IRAIASGETVGYNGTWRAARPSRIATIGVGYADGLPRSLSNRLTARW-----------QG 289 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++P+ G+++MD+T FD+TD I GD I++ GP +D A +GT Y++L +G R Sbjct: 290 KIIPVAGRLSMDLTTFDVTDHPDIAPGDVIELIGPGHDIDAFAAEAGTIGYEILTSLGPR 349 Query: 365 YAKF 368 Y + Sbjct: 350 YRRV 353 >gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057] gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057] Length = 834 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 149/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N +S L A+T +VK +AYG G +IA L V V +E Sbjct: 476 LEVNLGAMIANLNSYRSRLKPEAKTVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 535 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR A I ++ K +FD L P + S L K + P Sbjct: 536 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLEALIKEAEKEGITNFPIH 594 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 ++VDTG +RLG + ++ + + SH +D Q+ F Sbjct: 595 VKVDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRQQIVNFEK 654 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + +S+GI P F + R GI LYG N M V T Sbjct: 655 ASMELQNAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVNPVDN--SIMNNVSTLR 712 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L+R S IA IGYADG L Sbjct: 713 TTILQIRDVPGEDTVGYSRKGHLSRPSRIAAIPIGYADGLNRHLGNGH----------AY 762 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD ++IFG + + ++ T Y++L Sbjct: 763 CLVNGQKAPYVGNICMDVCMIDVTDI-DCKEGDMVEIFGDHLPITVLSDILETIPYEILT 821 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 822 SVSTRVKRVY 831 >gi|126651486|ref|ZP_01723690.1| D-alanine racemase [Bacillus sp. B14905] gi|126591739|gb|EAZ85835.1| D-alanine racemase [Bacillus sp. B14905] Length = 389 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 157/387 (40%), Gaps = 33/387 (8%) Query: 1 MHSN---EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + + I+L A++ N ++ + N + AVVK NAYG G +A A AG Sbjct: 17 MKTQQYFRPTKAMINLQAIQQNVKNLKKFIRPNVQIIAVVKANAYGHGDVAVAQAALEAG 76 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V + +E + +R + ++ G P I + + + + Sbjct: 77 ATILAVATPDEALHIR-AHFEDPDILILGASPVSFAPFAAQQRIMLTVYGSEWVQQAAPL 135 Query: 117 SCGVSHP--YALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + P ++VD+G R+G+ Q+ L + +L+ I +H A AD+ + Sbjct: 136 IANEALPLLLHMKVDSGMGRIGIRSEQDLLALYQTIESTDNVELNGIFTHFATADEKDTT 195 Query: 174 VNSVQLERFRTLISHYKGIEASLASS---SGILLGPNYHFQLTRPGISLYGGTD----KI 226 Q++ F + ++ + +S + ++ N + R GIS+YG + + Sbjct: 196 YFDQQVQFFESCLAVLPIKPPLVHASNTAASLVKDSNLQYDAVRYGISMYGLSPSSYVES 255 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 +Q + E+ ++ +++ GE V YG D I IGYADG L G Sbjct: 256 ILPFALQPAFSLESELVHVKEIKKGESVGYGATYVAPTDMWIGTLPIGYADGVIRKLGGQ 315 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G +PI+G+I MD M + + +G+ + + G I Sbjct: 316 ------------EVLIDGQRMPIVGRICMDQCMVALPKAY--AIGEKVTLIGQQGQNRIS 361 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +D+ A T NY++ I R + Y Sbjct: 362 IDEWATKLETINYEIPCMITARVPRIY 388 >gi|270290192|ref|ZP_06196418.1| alanine racemase [Pediococcus acidilactici 7_4] gi|270281729|gb|EFA27561.1| alanine racemase [Pediococcus acidilactici 7_4] Length = 375 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 148/377 (39%), Gaps = 25/377 (6%) Query: 4 NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL +D A++ N + L + AV+K +AYG G +A AG F V Sbjct: 6 HRASRLVVDAAAIRQNVKKEIERLDPQSELFAVIKADAYGHGLIPVARYTEQAGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR I VL + + + N+ + V LT + ++ Sbjct: 66 AILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLTAEHPL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLER 181 L +DTG R+G + L+ K + +H A AD+ ++Q++R Sbjct: 126 KVHLALDTGMGRIGFQESDGLNQAAELLIKDPRFVFEGVFTHFATADEKDPTYFNLQVDR 185 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F L+ + +++ L + L R G+ +YG + + +Q + Sbjct: 186 FHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAM 245 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E+R+ + G VSYG +D I IGYADGYP L G Sbjct: 246 TLESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGF---------- 295 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352 + G+ I+G++ MD M + G + + G I + D+A GT Sbjct: 296 --HVLVDGHFCEIVGRVCMDQLMIRLPHEYPA--GTPVILAGQSQGKSISMTDIADYVGT 351 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++ R + Y Sbjct: 352 INYEITCGFTERLPRVY 368 >gi|262279566|ref|ZP_06057351.1| alanine racemase [Acinetobacter calcoaceticus RUH2202] gi|262259917|gb|EEY78650.1| alanine racemase [Acinetobacter calcoaceticus RUH2202] Length = 356 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRHALQYNLNRVKQLAANSKIVSMVKANAYGHGIKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQ 127 +R Q + ++ G E I + VI Q + K ++ Sbjct: 66 IRELGFQQPVTLIEGAFYEDEMPIAIEQKFECVIHHQQQFEWLIKHKQEYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKVPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + AS +S+ I P HF RPGI LYG + +K ++ V++ A +I Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADKTVHDLDLKPVMSFTAEVIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I G Sbjct: 243 LNHIQAGEHVGYGSTFCAQQKMDIAIVSIGYGDGYPRAY-----------IKQNYVAIDG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T +++G ++++G +DDVA A+GT Y+LL R+ R Sbjct: 292 QLCPVVGRVSMDMLAIDVTAI-QVKLGSQVELWGTHRLVDDVADANGTIGYELLCRLSNR 350 Query: 365 YAK 367 + Sbjct: 351 PIR 353 >gi|171319307|ref|ZP_02908420.1| alanine racemase [Burkholderia ambifaria MEX-5] gi|171095489|gb|EDT40456.1| alanine racemase [Burkholderia ambifaria MEX-5] Length = 356 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ VVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRFAGPSKVWTVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQVRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 + G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAENIAGAR-SLANSAAVLWHPDTHFDWVRPGIMLYGASPSGLSADIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIAKGQAIGYGSTFSAPAQMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTHIVGRVSMDMITVDLTPCPQAGVGARVELWGNALPIDDVARHCGTIGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAGRVP 352 >gi|298369328|ref|ZP_06980646.1| alanine racemase [Neisseria sp. oral taxon 014 str. F0314] gi|298283331|gb|EFI24818.1| alanine racemase [Neisseria sp. oral taxon 014 str. F0314] Length = 352 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 157/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L++N+ ++ + G + AV+K +AYG G + A AL + F V + Sbjct: 2 RPLNARIRLDNLRHNYQTLKQIHGG-KMLAVIKADAYGHGAVRCAHALSDL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+E V+LR I +L G+ E D + + Sbjct: 60 VDEAVELRESGITNPIVLLEGVFEASEYATVDKYNLWPGVGSQWQLEALIAHNWQTPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G K + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYTSAYTALKQCKHVDGIVKFSHFACADEPDNGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R V YG ++ + + + A GYADGYP S ++G Sbjct: 239 ERVLQPHSPVGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVEG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ D+ +G ++++G + +++VA A+G Y++ + R Sbjct: 288 KRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYEIFCNV-KR 345 Query: 365 YAKFYT 370 Y+ Sbjct: 346 AKFTYS 351 >gi|326790617|ref|YP_004308438.1| alanine racemase [Clostridium lentocellum DSM 5427] gi|326541381|gb|ADZ83240.1| alanine racemase [Clostridium lentocellum DSM 5427] Length = 379 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 111/384 (28%), Positives = 181/384 (47%), Gaps = 33/384 (8%) Query: 5 EFLRL--KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 E LR +I+L+ L++N + L + AVVK +AYG G +++ L G++ F Sbjct: 9 ELLRAYSEINLSNLEHNLGQLQEQLPAMCKVIAVVKADAYGHGAVQVSRHLQRLGIEHFA 68 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V S++E ++LR+ + I VL G+ + + ++ + SK Sbjct: 69 VASIDEAIELRINQIEGEILVLGYTPIGRREDLIYYHITQALIDESYAEKISKGKG---R 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178 +++DTG NRLGL + L +++ SHL+ AD D Q Sbjct: 126 LRVHIKLDTGMNRLGLRATNLDALMAIYRKENL-EITGTFSHLSRADSLCDEDKSFTEYQ 184 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---- 229 ++ F +I +H + + L SS GI+ P L RPGI LYG + ++ Sbjct: 185 IKTFYEIIGSLKKNHIEVGKTHLQSSYGIINYPQIKCDLARPGILLYGVSSNPEENIAER 244 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V++ A++ I+ GE V YG K+ ++S+IA+ IGYADGYP LS Sbjct: 245 LDVRPVLSLRAKVGSIKHVDKGETVGYGNHFKVEKESVIAIVTIGYADGYPRYLSKR--- 301 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G K I+G VPI+G + MD + D+T I+VG + + G D + ++ Sbjct: 302 -------GCKVLIRGREVPIIGNVCMDQMIVDVTSLNDIKVGSQVTLIGKDEEAYLSVNQ 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 ++L + T N + L IG R K Y Sbjct: 355 ISLLTNTINNETLTGIGQRVKKVY 378 >gi|322392695|ref|ZP_08066155.1| alanine racemase [Streptococcus peroris ATCC 700780] gi|321144687|gb|EFX40088.1| alanine racemase [Streptococcus peroris ATCC 700780] Length = 367 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + IDL A++ N M A AVVK NAYG G +A V Sbjct: 1 MKTSPHRPTKAFIDLGAIRYNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVA-TAIQNDV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR RI +L + N+ ++ + + Sbjct: 60 DGFCVSNIDEALELRQAGIDQRILILGVTEVASIDLAKKYNITLAVAGLEWIQQLLAEEP 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L++D+G R+G + + + I +H A AD+ S Sbjct: 120 DLSGLNVHLKIDSGMGRIGFRESRDAEQAQALLKEHGASVEGIFTHFATADEESDIYFYK 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL RF+ ++S K ++S+ L + F R G ++YG + + + Sbjct: 180 QLNRFKEILSELKDRPDLVHASNSATTLWHTDTIFNAVRMGDAMYGLNPSGQVLTLPYEL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ ++K G + YG + + +IA IGYADG+ + Sbjct: 240 KPALSLESALVHVKKVPTGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G PI+G+++MD + +G + + G +I DVA+ Sbjct: 295 -------VLVDGQACPIVGRVSMDQITIRLPKVYP--IGTKVTLIGSNGDQEITATDVAV 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ + R + Y Sbjct: 346 YRGTINYEVVCLLSDRIPREY 366 >gi|229171087|ref|ZP_04298685.1| Alanine racemase [Bacillus cereus MM3] gi|228612417|gb|EEK69641.1| Alanine racemase [Bacillus cereus MM3] Length = 389 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 154/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNITHIKDFIPSDVEIFAVVKANAYGHDYVPVAKTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR I VL + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITVPILVLGPSPARDVNVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKAFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLQQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLINGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGKQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIIATISFRVPRIF 373 >gi|240126095|ref|ZP_04738981.1| Alr [Neisseria gonorrhoeae SK-92-679] gi|268684684|ref|ZP_06151546.1| alanine racemase [Neisseria gonorrhoeae SK-92-679] gi|268624968|gb|EEZ57368.1| alanine racemase [Neisseria gonorrhoeae SK-92-679] Length = 352 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESSMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGDSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|149278412|ref|ZP_01884549.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] gi|149230782|gb|EDM36164.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] Length = 824 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 151/368 (41%), Gaps = 18/368 (4%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL AL N L + A+VK +YG G +IA L V V +E Sbjct: 465 LEIDLNALSGNLQFYRSKLKPGVKIMAMVKAFSYGSGSFEIANVLQYHKVDYLAVAFTDE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 GV LR I V+ E I+ + ++ F + L +P ++ Sbjct: 525 GVALRKGGITMPIMVMSPEPSAFEAIVRYKLEPEIYNTDILNKFLNFLSDTEQQYPVHIK 584 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLI 186 +DTG +RLG + D + + ++ SHL ++D QL RF + Sbjct: 585 IDTGMHRLGFEEIDIPDLLMALNSNQKIRVQSSFSHLVGSEDIMHDEFTRHQLSRFTAMA 644 Query: 187 SHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 ++++SGI P+ + R GI +YG I +S +Q V + Sbjct: 645 DTIREGLGYDFIRHISNTSGISRHPDAQLDMVRIGIGMYGYDGGIAQSKGLQPVAILKTT 704 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I I+ E + YG + L A IGYADGY GK Sbjct: 705 ITQIKHIKPNETIGYGRKGILPEGGTTATVKIGYADGYDRRFG----------HGVGKML 754 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 IKG +VP +G I MDM M D+T ++ GD + +F + + D+A GT Y++L I Sbjct: 755 IKGALVPTVGVICMDMCMLDVTGL-DVQNGDEVIVFNGQLSIADLAQQIGTIPYEILTNI 813 Query: 362 GTRYAKFY 369 R + Y Sbjct: 814 SQRVKRVY 821 >gi|284801216|ref|YP_003413081.1| hypothetical protein LM5578_0966 [Listeria monocytogenes 08-5578] gi|284994358|ref|YP_003416126.1| hypothetical protein LM5923_0920 [Listeria monocytogenes 08-5923] gi|284056778|gb|ADB67719.1| hypothetical protein LM5578_0966 [Listeria monocytogenes 08-5578] gi|284059825|gb|ADB70764.1| hypothetical protein LM5923_0920 [Listeria monocytogenes 08-5923] Length = 368 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + + AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA S N QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|163754461|ref|ZP_02161583.1| alanine racemase [Kordia algicida OT-1] gi|161325402|gb|EDP96729.1| alanine racemase [Kordia algicida OT-1] Length = 369 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 149/370 (40%), Gaps = 20/370 (5%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVE 66 L+I+ AL+ N+ + + + + + AVVK YG ++A L + V F V + Sbjct: 9 LEINFKALQQNFEFLKSKTKADTKFLAVVKAFGYGSDAIEVAKFLQDELNVDYFAVAYIR 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYA 125 EG LR I VL+ + I + + F + G +P Sbjct: 69 EGAYLRAAGITTPILVLHPQIVNLKHAIAYNLEPSLYNDRIFNAFAKEAAKQGKKDYPVH 128 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184 L+ +TG NRLG + + + SHLA ++D + Q+ F Sbjct: 129 LKFNTGLNRLGFFHTDTDYIFKKLKTLSQIKAVSLFSHLAASEDKNEIDFTKNQIRLFND 188 Query: 185 LISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 +++++ + ++SGIL P HF + R GI LYG + +Q V + + Sbjct: 189 VVANFEQTFNYKPILHMTNTSGILNYPEAHFDMVRTGIGLYGFGNDPKYDKHLQPVASLK 248 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I I + GE V Y + IA IG+ADG G Sbjct: 249 SVISQIHRIEKGESVGYNRAFVANDYTTIATIPIGHADGISRQFGNGV----------GS 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G PI+G + MDM M +IT GD + IFG +++A T +Y++L Sbjct: 299 VVINGKKAPIIGNVCMDMLMVNITGIR-CNEGDEVIIFGEGQTAEELASKINTISYEILT 357 Query: 360 RIGTRYAKFY 369 + R + + Sbjct: 358 AVSQRIKRVF 367 >gi|240167811|ref|ZP_04746470.1| alanine racemase [Mycobacterium kansasii ATCC 12478] Length = 392 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 169/379 (44%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + +G+A+ AVVK + YG G ++A A AG + V +V Sbjct: 13 LAEAVVDLGAVEHNVRVLREHAGSAQVMAVVKADGYGHGATRVAQAALAAGAAELGVATV 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ +SS Q + G + Sbjct: 73 DEALALRADGITAPVLAWLHPPGIDFGPALVADVEIAVSSTRQLDELLDAVARTGRTATV 132 Query: 125 ALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++VDTG NR G+ E L + + +L ++SHL AD P +N +Q +R Sbjct: 133 SVKVDTGLNRNGVPPALYPEMLARLRQAAAEHAIRLRGLMSHLVYADAPQQPINDIQAQR 192 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 FR ++S+ + A L++SS + P+ L RPGI++YG + + + Sbjct: 193 FRDMLSYAREEGVTFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPERGEMGLVPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + LI+ AGE VSYG D+ +A+ IGYADG +L G Sbjct: 253 MTVKCAVALIKSVPAGEGVSYGHTWIAPHDTTVALLPIGYADGVFRSLGGRL-------- 304 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 305 ---EVLINGRRRPGVGRICMDQFVVDLGPGPVDVAEGDEAILFGPGARGEPTAQDWADLV 361 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R ++ Y Sbjct: 362 GTIHYEVVTSPRGRISRTY 380 >gi|291550435|emb|CBL26697.1| alanine racemase [Ruminococcus torques L2-14] Length = 388 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 156/385 (40%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58 M + +I+L A+ N M G R AV+K +AYG G +A + Sbjct: 1 MKQYNRVCARINLDAIAYNMEQMKNRIGQEGRLIAVIKTDAYGHGAVPLAEMFEETPYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 + V + E LR + + I +L + P + + + + + + + + Sbjct: 61 GYAVACMGEARTLRAHGIKKPILILGCVFPDEYEEMVEKEIRAAVYTEEMAKGMAEAAVR 120 Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G + +++DTG R+G + +E+++ ++ + +H A AD+ Sbjct: 121 SGKTAFLHIKIDTGMGRIGFKVSKESVETISRISKLPNIKMEGMFTHFAKADEFDKSYTF 180 Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q E+F + + +S+GI+ P+ L R GIS+YG Sbjct: 181 AQHEKFLWMKEQLEKNGVQISYYDCDNSAGIIDFPDMKHDLARAGISIYGMYPSDEVKKD 240 Query: 232 M---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + + I ++ G +SYGG + IA +GY DGYP +LS Sbjct: 241 AVDLKPALELISHISFVKDVEKGTSISYGGTFVAPKKMRIATIPVGYGDGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G I+G++ MD M D+T+ + D + + G D I+++ Sbjct: 298 --------KGYVLIHGKRADIVGRVCMDQFMVDVTEIPEAKFMDPVTLVGKDKDAVIRVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D++ SG NY+ + + R + Y Sbjct: 350 DLSDLSGRFNYEFVCDLSKRVPREY 374 >gi|260554562|ref|ZP_05826783.1| alanine racemase [Acinetobacter baumannii ATCC 19606] gi|260411104|gb|EEX04401.1| alanine racemase [Acinetobacter baumannii ATCC 19606] Length = 356 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 98/363 (26%), Positives = 169/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E I + VI Q + K ++ ++ Sbjct: 66 IRELGFEQPVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHIKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I G Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDG 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G +++ G +DDVA A+GT Y+LL R+ TR Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELLGNHRLVDDVAEANGTIGYELLCRLSTR 350 Query: 365 YAK 367 + Sbjct: 351 PVR 353 >gi|209548649|ref|YP_002280566.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534405|gb|ACI54340.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 388 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 186/365 (50%), Positives = 245/365 (67%), Gaps = 2/365 (0%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DLTAL NW M SG AR AAVVK +AYG+G E ALY AG +DFFV +V+ Sbjct: 19 LRLTVDLTALTENWRDMAQRSGAARAAAVVKADAYGMGIEDAGEALYMAGARDFFVATVD 78 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV LRLY P ARIFVL GI PG E+ F+ +L+PVISS QL F+ +++ +P AL Sbjct: 79 EGVTLRLYAPDARIFVLSGIWPGTERRFFENDLVPVISSDEQLAFWMAVLADYGDYPCAL 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTGFNRLGL + +A+ + L++SHLAC D+PS +N QLE FR + Sbjct: 139 HVDTGFNRLGLHMDDAIALADDVSRPASFAPVLVMSHLACGDEPSHAMNRQQLESFRRVS 198 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG ++PM+ V TAEARII +R Sbjct: 199 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGLANPMRPVATAEARIIQVR 258 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE VSYG +L R S +A+A+ GYADGY LS +V GG+GFI G+ Sbjct: 259 SVEAGETVSYGRALQLRRKSRLAIASAGYADGYMRGLSSGGVPLRQAVPQGGQGFIAGHK 318 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+ITMD+T+FDITD + GDY+++FG ++ LDDVA A+GT Y++L +G R Sbjct: 319 VPVAGRITMDLTIFDITDLPDNAVRAGDYVELFGKNMPLDDVARAAGTIGYEILTSMGLR 378 Query: 365 YAKFY 369 + + Y Sbjct: 379 HERRY 383 >gi|325688113|gb|EGD30132.1| alanine racemase [Streptococcus sanguinis SK72] Length = 369 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 146/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQMTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAREAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLTRF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LISELVHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + S + G + + G I + DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|323340097|ref|ZP_08080362.1| alanine racemase [Lactobacillus ruminis ATCC 25644] gi|323092474|gb|EFZ35081.1| alanine racemase [Lactobacillus ruminis ATCC 25644] Length = 380 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 27/379 (7%) Query: 4 NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+K+N + + + AVVK NAYG G ++A AG F V Sbjct: 12 HRNAKAVIDLDAIKHNIEIEKKRMRDDQKLFAVVKANAYGHGMIEVARTAKEAGANGFCV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++EG++LR + +L Q +I +L + + L L+ G+ Sbjct: 72 AIIDEGIELRNAGFDDLVLILGVCPAEQSNVIAANDLSVAVGDLDFLENAKPLLKAQGLK 131 Query: 122 HPYALQVDTGFNRLGLSLQEALD--FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L DTG R+G E + N + I +H ACAD QL Sbjct: 132 LKVHLAFDTGMGRIGFVNGEKVHEAEAFMKENSDQFEFEGIFTHFACADTKDDSYYKKQL 191 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQT 234 E+F L + + +S+ + + R GI++YG ++ ++ Sbjct: 192 EKFNELKDALDDLPPYVHVANSAASMWHDDCGGNAVRYGITMYGLNPSGRELELPCEIKP 251 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 T E+ ++ +R G + YG + I +GYADG+ + G Sbjct: 252 AFTLESELVSVRLLEPGTGIGYGKTYTVDEPQWIGTVPLGYADGWLRRMQGF-------- 303 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 K + G +G++ MD M + +E G + + G + I DVA + Sbjct: 304 ----KVLLNGEYCQSVGRVCMDQFMVRLP--YEMEKGTKVTLIGENGGKRITAQDVADYA 357 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y++L + R + + Sbjct: 358 DTIHYEILCSVSERVPREF 376 >gi|254827830|ref|ZP_05232517.1| alanine racemase [Listeria monocytogenes FSL N3-165] gi|258600211|gb|EEW13536.1| alanine racemase [Listeria monocytogenes FSL N3-165] Length = 368 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 158/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L N AVVK NAYG G ++A +AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKDAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA S N QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|193077741|gb|ABO12603.2| alanine racemase 1 [Acinetobacter baumannii ATCC 17978] Length = 356 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 169/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E I + VI Q + K ++ ++ Sbjct: 66 IRELGFEQPVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKHKQAYITQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHVKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I Sbjct: 243 LNHIEAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDS 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ +R Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350 Query: 365 YAK 367 + Sbjct: 351 PVR 353 >gi|16802927|ref|NP_464412.1| hypothetical protein lmo0886 [Listeria monocytogenes EGD-e] gi|224503145|ref|ZP_03671452.1| hypothetical protein LmonFR_11593 [Listeria monocytogenes FSL R2-561] gi|17433700|sp|O85045|ALR_LISMO RecName: Full=Alanine racemase gi|16410289|emb|CAC98964.1| dal [Listeria monocytogenes EGD-e] Length = 368 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + + AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA S N QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVGGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTITADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|115525335|ref|YP_782246.1| alanine racemase [Rhodopseudomonas palustris BisA53] gi|115519282|gb|ABJ07266.1| alanine racemase [Rhodopseudomonas palustris BisA53] Length = 404 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 186/364 (51%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + + A A VVK + YG G + AL AG + FFV ++EE Sbjct: 31 LTIDLDALIANWRRLEKTAVPAECAGVVKADGYGCGAGPVTKALAAAGCKTFFVATLEEA 90 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R P+A ++VL G+ P T PVI S+ +L + G A+ Sbjct: 91 RAVRAAAPEAALYVLNGLFPNCGDGFAATGAQPVIGSLDELAEWDVFCRRTGWKGGAAIH 150 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGLS+ EA N ++L++SHLACAD + +N+ Q+ FR + Sbjct: 151 IDTGMNRLGLSIAEAQGIV-PRINAGDHGITLVMSHLACADMLNHPLNAKQVGAFREIAG 209 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASLA+SSGI LG ++ F + RPG +LYG +PMQ VVT +ARI+ +R+ Sbjct: 210 LFSGVPASLAASSGIYLGSHFGFDMVRPGAALYGINPTPEADNPMQPVVTLQARILQVRE 269 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R S +AV + GYADGY G D G I G Sbjct: 270 VERGETVGYGATWTARRASKLAVISAGYADGYFRAAGGSDGTR------GADVIIAGQRC 323 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI G+I+MD+ D+TD G + G I +D++ GT Y++L +G RY Sbjct: 324 PIAGRISMDLLAVDVTDLAPNAARRGQMATLLGDGISVDELGHHFGTIGYEVLTSLGARY 383 Query: 366 AKFY 369 + Y Sbjct: 384 QRTY 387 >gi|328945680|gb|EGG39831.1| alanine racemase [Streptococcus sanguinis SK1087] Length = 369 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGISKKILVLGVSDLAALPLSRKGKVSLTVASLEWLDLALDAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEVIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDNVPPLVHASNSATSLWHSEIVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPRAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|260587632|ref|ZP_05853545.1| alanine racemase [Blautia hansenii DSM 20583] gi|260541897|gb|EEX22466.1| alanine racemase [Blautia hansenii DSM 20583] Length = 382 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M ++ I+L A+ N +M + + N + AV+K + YG G IA + + + Sbjct: 1 MRIQSRIQAHINLDAIDYNLKNMYDYMGKNTQIIAVLKADGYGHGAVPIAKEIEAYSYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 V +VEEG +LR + I +L + I + P + + SK Sbjct: 61 GIAVATVEEGRELRKAGIKKPILILGYTYEEDYDRIVKEDFQPTVFKLSMAEQLSKAAVK 120 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G +++A+ +L I +H A AD+ Sbjct: 121 ANKTLKIHIKLDTGMTRIGYRHIEDAIPEIVEISKLPNIELEGIFTHFARADETDLAPAY 180 Query: 177 VQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 QLE+++ + +GI ++S+ I+ + +F R GI LYG Sbjct: 181 QQLEKYQEFLDALKRQGISIPVKHCSNSAAIIRMQDAYFDAVRAGIILYGMYPSNEVEKD 240 Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ + ++ I I++ G +SYGG + + +A +GYADGY LS Sbjct: 241 KILLKPAMELKSHIAYIKEVEPGVEISYGGTFTTEKVTRVATIPVGYADGYSRGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G ILGK+ MD M D+T+ + D + + G D I ++ Sbjct: 298 --------KGSVLIRGKRAKILGKVCMDQFMVDVTEIPEAKELDEVTLLGKDGTDCITME 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ I R + Y Sbjct: 350 ELGELSGRFNYEFACCISKRVPRVY 374 >gi|189347602|ref|YP_001944131.1| alanine racemase [Chlorobium limicola DSM 245] gi|189341749|gb|ACD91152.1| alanine racemase [Chlorobium limicola DSM 245] Length = 374 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 110/378 (29%), Positives = 160/378 (42%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I L+ L+ N + +G R +VK NAYG G ++A L + GV DF V Sbjct: 8 PMAEARIKLSHLEENIRHIRQWTGKKLRIMGIVKANAYGHGVHRVAETLESVGVSDFGVA 67 Query: 64 SVEEGVKLRLYT----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 +++E V LR P A + + P + + + V S K + G Sbjct: 68 NIQEAVALRTGGALKKPAAILAFSSPLEPQIDGYLQHDIEMTVCSFDILRAAGEKAAAYG 127 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++VDTG RLGL E ++ N +L I +H A QL Sbjct: 128 KKLAVQVKVDTGMGRLGLQPAETMELLRNINRSPDIELKGIYTHFAEGS-KPGGYTGRQL 186 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-- 232 E FR L++ Y+ I ASS IL + F + RPGI LYG P+ Sbjct: 187 EEFRNLVTQYESESGTTICKHAASSGAILCRKDAWFDMVRPGILLYGYLPDPCMPAPIAV 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V+ EAR+I I+ G VSY + IA A GYADGYP LS Sbjct: 247 TPVMQMEARVIFIKTVAPGTSVSYNRTWRAAESRSIATVAAGYADGYPRALSN------- 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASG 351 G+ I G P +G +TMD M D+ ++ GD +FG DD+A + G Sbjct: 300 ----KGRVVINGKSCPQVGTVTMDQIMIDLGKEHDVKTGDKAILFGWEGPTADDIAGSIG 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 + +Y++L + R + + Sbjct: 356 SISYEVLCSVSNRVVRIF 373 >gi|332669569|ref|YP_004452577.1| alanine racemase [Cellulomonas fimi ATCC 484] gi|332338607|gb|AEE45190.1| alanine racemase [Cellulomonas fimi ATCC 484] Length = 421 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 158/381 (41%), Gaps = 24/381 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +DL A++ N S+ A + +A+ AVVK +AYG G A A G V Sbjct: 28 PARAVVDLAAIRGNVRSLAAHAPSAQVMAVVKADAYGHGLVPSARAAVEGGATWLGAAQV 87 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQ--EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 E ++LR + + PG + + V ++ + + Sbjct: 88 AEALELRRAGVVGPRVLTWLYAPGAPLADAVAAVVDVSVAAAWALDEVVAAARVAHRTAR 147 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLE 180 L+VDTG R GL+ + + ++ + SHLA AD+P+ Q Sbjct: 148 VHLKVDTGLGRNGLTPGDLAALLPAVLRAQAEGAVEVVGVWSHLAFADEPAHPTVRAQAG 207 Query: 181 RFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 F + + + LA+S+ L P+ H L RPGI++YG + Sbjct: 208 VFADAVRTVEQAGLRPEVRHLANSAATLTDPSVHHDLVRPGIAVYGLSPVPQVGGPADFG 267 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +T EA + ++ AG+ +SY + +++++ + +GYADG P SG Sbjct: 268 LVPAMTFEAELATVKTVPAGQGLSYAHRYVTPQETVVGIVPVGYADGVPRHASGGQDG-- 325 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 GG + G + + G++ MD + D+ GD +++FG D A Sbjct: 326 ----PGGPLRVGGRTLAVAGRVCMDQVVVDLGPGACEVAGDRVELFGTGADGGPTAQDWA 381 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 A+GT Y+++ R+G R + Sbjct: 382 DAAGTIAYEIVTRVGARVPRV 402 >gi|326405358|ref|YP_004285440.1| alanine racemase [Acidiphilium multivorum AIU301] gi|325052220|dbj|BAJ82558.1| alanine racemase [Acidiphilium multivorum AIU301] Length = 357 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 191/364 (52%), Gaps = 12/364 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ID A+ NW ++ A A VVK +AYGLG IAPAL AG + FFV + Sbjct: 2 NHPTLTIDPGAVAANWQALAARHAG-EVAGVVKADAYGLGAALIAPALAAAGCRSFFVAT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR P ARI VL G PG+E+ + L PV+ S+ + + P Sbjct: 61 LDEALSLRALLPAARIGVLNGCPPGEEETMRARELRPVLGSLAACARWRGAAGDDEAPPS 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +DTG NRLGL EA + L+ +++HL A++P + N+ Q ERF Sbjct: 121 FLHLDTGMNRLGLDRDEAAHLIAHPTLLDGLGLTHVMTHLVAAEEPDASANAAQRERFAA 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + + + SLA+SSG+ LGP + L RPG +LYGG ++PM+ + A I+ Sbjct: 181 FAARFPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPTAANPMRPAIALAAPILQ 240 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 IR +GE V Y G + R S IA +GYADG P +LS + +G Sbjct: 241 IRAIASGETVGYNGTWRAARPSRIATIGVGYADGLPRSLSNRLTARW-----------QG 289 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++P+ G+++MD+T FD+T+ I GD I++ GP +D +A +GT Y++L +G R Sbjct: 290 KIIPVAGRLSMDLTTFDVTEHPDIAPGDVIELIGPGHDIDAIAAEAGTIGYEILTSLGPR 349 Query: 365 YAKF 368 Y + Sbjct: 350 YRRV 353 >gi|313892618|ref|ZP_07826205.1| alanine racemase [Dialister microaerophilus UPII 345-E] gi|313119015|gb|EFR42220.1| alanine racemase [Dialister microaerophilus UPII 345-E] Length = 365 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 103/370 (27%), Positives = 154/370 (41%), Gaps = 25/370 (6%) Query: 11 IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L AL++N + + N A++K + YG G G V V+EG+ Sbjct: 8 ISLKALRHNLRLIRSTVPENVELMAILKSDGYGHGSIATLNIALEEGYSSAAVARVDEGI 67 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYALQV 128 KLR + I+ L P + ++I I V T + L V Sbjct: 68 KLRQHGFNCPIYTLGLPLPYDMPVGVANDMIMPIDDTVDLKTMEAVAAVSNKEVKVMLTV 127 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS- 187 DTG NRLG+ L + +F +L +H+A AD+ QL+ F + Sbjct: 128 DTGMNRLGIHLDKIPEFLKKLKRYPHLKLHGTFTHMATADEKDKTFAIAQLKEFEKALEL 187 Query: 188 --HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARII 243 K S A+S+GIL P + L RPGI +YG + K+ +Q V++ + I Sbjct: 188 LPKTKDFRISAANSAGILELPQSLYNLARPGIIMYGIYPSGDMKKNLDLQPVMSLISHCI 247 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ GE V YG K A IGYADGYP +LS G I Sbjct: 248 HVQTLKKGETVGYGATYKAEHMMKTATIPIGYADGYPRSLSN-----------KGYVLIG 296 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLV 359 G PI+G+I MD M + D ++ GD + + G I +++VA + T Y+L+ Sbjct: 297 GKKRPIVGRICMDQLMVAVDD--TVRTGDQVVLIGEQGNEKITIEEVAELAETIPYELMC 354 Query: 360 RIGTRYAKFY 369 R + Y Sbjct: 355 IF-KRIIRVY 363 >gi|55670437|pdb|1VFH|A Chain A, Crystal Structure Of Alanine Racemase From D-Cycloserine Producing Streptomyces Lavendulae gi|55670438|pdb|1VFS|A Chain A, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae gi|55670439|pdb|1VFS|B Chain B, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae gi|55670440|pdb|1VFT|A Chain A, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae gi|55670441|pdb|1VFT|B Chain B, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine Racemase From D-Cycloserine-Producing Streptomyces Lavendulae Length = 386 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 158/378 (41%), Gaps = 29/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL A++ N ++ A + + AVVK NAYG G A A AG + EE Sbjct: 10 AEIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEA 69 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 ++LR Q RI G + +T++ +S + + + G + L Sbjct: 70 LELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLX 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRT 184 DTG R G + + + + + SH ACAD+P +QL+ FR Sbjct: 130 ADTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRD 189 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235 +++ +A+S L P HF L R G+++YG + P Q Sbjct: 190 MLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A + L++ AG VSYG ++ +A+ GYADG P SG Sbjct: 250 MTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + G + G+I MD + D+ + L E GD I G + +D A A+ Sbjct: 301 --GPVLVAGKIRRAAGRIAMDQFVVDLGEDL-AEAGDEAVILGDAERGEPTAEDWAQAAH 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ RIG R + Y Sbjct: 358 TIAYEIVTRIGGRVPRVY 375 >gi|41410356|ref|NP_963192.1| alanine racemase [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399190|gb|AAS06808.1| Alr [Mycobacterium avium subsp. paratuberculosis K-10] Length = 391 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + + A+ AVVK + YG G + A A AG + V +V Sbjct: 16 LAEALVDLGAIEHNVRLLCEQARGAQVMAVVKADGYGHGAVQTARAALAAGAAELGVATV 75 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + + + +SS Q + + G + Sbjct: 76 DEALALRAAGISAPVLAWLHPPGIDFRPALLAGVQIGLSSQRQLDELLTAVRDTGRTATV 135 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDT NR G+ + + ++ ++SH+ AD P++ VN VQ +R Sbjct: 136 TVKVDTRLNRNGVPPAQYPSMLTALRRAVAEEAIVPRGLMSHMVYADQPANPVNDVQAQR 195 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F +++ + A L++SS + P+ F + RPGI++YG + + Sbjct: 196 FTDMLAQAREQGVRFEVAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPELGDMGLVPA 255 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ +GYADG +L G Sbjct: 256 MTVKCTVALVKSIRAGESVSYGHTWTAQRDTNLALLPVGYADGIFRSLGGRL-------- 307 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 308 ---QVSINGRRRPGVGRICMDQFVVDLGPGRPDVAEGDEAILFGPGSNGEPTAQDWADLL 364 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 365 GTIHYEVVTSPRGRITRTY 383 >gi|38233177|ref|NP_938944.1| alanine racemase [Corynebacterium diphtheriae NCTC 13129] gi|38199436|emb|CAE49080.1| Putative alanine racemase [Corynebacterium diphtheriae] Length = 382 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 24/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I A+ N + + A+ VVK + Y G ++A + G F V + Sbjct: 2 NLLETRISCDAIAANTRRLKDMVAPAQLMCVVKADGYNHGAPEVATVMARNGADQFGVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---SKLMSCGVS 121 + E +LR I D ++ S+ + + G Sbjct: 62 LAEAHQLRDAGITLPILCWIWSPEQDFSAAIDRDIDLAAVSMDHVRALIAEAMRRPAGTR 121 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DT +R G+ + ++ + SHLACADD S Q E Sbjct: 122 VRVTVKIDTELHRSGIDEANWTEAFELLHACPQVNVTGVFSHLACADDLESDYTDHQAEV 181 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 FR IS + + LA+S L P+ HF + RPG++LYG H ++ + Sbjct: 182 FRRAISAGRNVGLDLPVNHLAASPATLTRPDLHFDMVRPGLALYGHEPIAGLDHGLREAM 241 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + +++ AG+ SY D + V +GYADG P + G Sbjct: 242 TWIGSVTVVKPIAAGQGTSYNMTWHAPADGYLCVVPVGYADGLPRNVQGHL--------- 292 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALASG 351 + I G P +G++ MD + + D+ + GD IFGP + + ++A A+G Sbjct: 293 --EVTIAGTRYPQVGRVCMDQIVVFLGDNSRGVAPGDEAIIFGPRDTQAMTVTELACATG 350 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T NY++L R R + Y+ Sbjct: 351 TINYEILCRPTGRSHRTYS 369 >gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056] gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056] Length = 828 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 146/370 (39%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V +E Sbjct: 470 LEVNLGAMIANLNYYRGKLRPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 529 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + S L K + P Sbjct: 530 GSDLRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLEALIKEAEKEGITNFPIH 588 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG + + + + SH +D Q+E F Sbjct: 589 VKLDTGMHRLGFAPDDMPLLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRRQIEIFEK 648 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + +S+GI P F + R GI LYG + N M V T + Sbjct: 649 ASMQLQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVSPIDN--SIMNNVSTLK 706 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L Sbjct: 707 TTILQIRDVPEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGNGH----------AY 756 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD ++IFG + + ++ GT Y++L Sbjct: 757 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLGTIPYEVLT 815 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 816 SVSTRVKRVY 825 >gi|154483679|ref|ZP_02026127.1| hypothetical protein EUBVEN_01383 [Eubacterium ventriosum ATCC 27560] gi|149735589|gb|EDM51475.1| hypothetical protein EUBVEN_01383 [Eubacterium ventriosum ATCC 27560] Length = 395 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 154/376 (40%), Gaps = 28/376 (7%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++L A+ N M + V+K + YG G IA AL N + V + E Sbjct: 12 AEVNLDAIIKNIEMMREKIKPETGIVGVIKTDGYGHGAVPIAKALENE-CVGYAVATAWE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 G LR + +++L + ++ + ++P I + +S + + + Sbjct: 71 GHNLRRHGIDKPLYILGVVPENLCDLVINEEMLPPIFTYKMAKAFSDHAVKLNKTVKFNI 130 Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 VDTG +R+G +EA++ ++ +H A AD Q + + Sbjct: 131 AVDTGMSRIGYIPSEEAVNEVVEISKLPNVEIESAFTHFAKADYVDKSFAEKQFKEYNDF 190 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237 I+ + A+S+ ++ P ++R GIS+YG ++ Sbjct: 191 IAKVESKGVKIPIHQCANSAAMMEMPETSLTISRAGISMYGLYPSEEMDKDNMKLIPAMS 250 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ ++ G VSYG + IA +GY DGYP LS Sbjct: 251 IYSHVVYVKNIEKGRGVSYGQTFVADKPMTIATIPVGYGDGYPRNLSN-----------K 299 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G I G ILG++ MD M D+T + ++ GD + + G +I +DD+A +GT Sbjct: 300 GYVLINGKKCNILGRVCMDQFMVDVTG-MDVKEGDKVTLAGKDGSEEILIDDLAALAGTF 358 Query: 354 NYDLLVRIGTRYAKFY 369 NY+ + +G R + + Sbjct: 359 NYEFVCDLGKRVPRVF 374 >gi|152974082|ref|YP_001373599.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022834|gb|ABS20604.1| alanine racemase [Bacillus cytotoxicus NVH 391-98] Length = 389 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++DL A+ NN + L + AVVK NAYG G +A AG V + Sbjct: 10 TWVEVDLDAIYNNVTRIKELIRDDVEIFAVVKGNAYGHGYVPVAKTALEAGATRLAVAFL 69 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR A I VL P + + ++ + + KL + VS + Sbjct: 70 DEALILRRAGITAPILVLGPSAPRDVNVAAEHDVTLTVFQKEWVEEAIKLWNSPVSMKFH 129 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L D+G R+G+ + E F + N + + +H A AD+ + Q F Sbjct: 130 LNFDSGMGRIGIRERGELEGFLRSLENAPFLEFEGVYTHFATADEVETSYFDKQYNTFLE 189 Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV---- 235 +S + + A+S+ L F R GI++YG T I S + Sbjct: 190 QLSWLEKLGVSPRLVHAANSAATLRFHGITFNAVRIGIAMYGVTPSIEISPFLPIQLEAA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ + + I++ + G+ VSYG + + IA IGYADG+ L G Sbjct: 250 LSLHSTVAHIKQVMKGDGVSYGVTYQTRTEEWIATIPIGYADGWLRRLQGF--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 K + G VPI+G++TMD M + + +G + + G I +VA + Sbjct: 301 ---KVLVNGKRVPIVGRVTMDQLMLRLP--YKVSLGTKVTLIGKQGSEYIHAAEVAEYTS 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+++ R + + Sbjct: 356 TINYEIITTTSFRVPRIF 373 >gi|294649985|ref|ZP_06727373.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194] gi|292824078|gb|EFF82893.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194] Length = 356 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 101/364 (27%), Positives = 169/364 (46%), Gaps = 23/364 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID TAL+ N + + L+ N++ ++VK NAYG G + AL F V +EE ++ Sbjct: 8 IDSTALQYNLNRVKQLAPNSKIVSMVKANAYGHGIKDCLTALAA--TDAFGVACLEEALE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127 +R I ++ G+ E I + L V+ Q+ + K + ++ Sbjct: 66 IRRLGYLQPITLIEGVFSADEMIHVIEQKLECVVHHAQQVEWLLAHKDQYQALDLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E + + + + A D +N Q +F + Sbjct: 126 LNSGMNRLGFKVSEIITVIQRLKAEGFNCVLTMHFANADTD---HPLNEQQKMQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIIL 244 + I AS +S+ I P HF RPGI LYG + +K+ ++ V+T A II Sbjct: 183 ACEPILASCCNSAAIYRYPELHFDFVRPGIMLYGASPFADKNVEALDLKPVMTFSAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + + GE V YG T+D IA+ +IGY DGYP I Sbjct: 243 LNQIQQGEYVGYGSTYVATQDMTIAIVSIGYGDGYPRAY-----------IKPNFVAIHD 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++P++G+++MDM DI++ + E+G ++++G +DDVA A+GT Y+LL R+ R Sbjct: 292 QLIPVIGRVSMDMIAIDISNL-NAEIGTKVELWGNTRLVDDVAEANGTIGYELLCRLSQR 350 Query: 365 YAKF 368 + Sbjct: 351 PQRR 354 >gi|257870946|ref|ZP_05650599.1| alanine racemase [Enterococcus gallinarum EG2] gi|257805110|gb|EEV33932.1| alanine racemase [Enterococcus gallinarum EG2] Length = 373 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+K N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAIIDLKAIKENVENEVARLPKATDLFAVVKANGYGHGAIETATAALEGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 +V+EG++LR I VL + ++ NL +S+ L + + Sbjct: 66 ATVDEGIELREAGFSEPILVLGIVSVADIGLLSYYNLSFPVSTNEWLQEAAAFLQKNPVT 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VDTG R+G +E L + L + +H A AD Q Sbjct: 126 NPLKVHLKVDTGMGRIGFISNEELLSAVKWLQEQSLFTWEGVFTHFATADQADDTYWQEQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 +RF+T ++ + + +S+ L + R GI++YG + +++P++ Sbjct: 186 NQRFQTALACLPELPRYVHAGNSATALWHAEAVGNMVRYGIAMYGLNPSGTALPETYPLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ + ++ ++ G + YG + I IGYADG+ + G Sbjct: 246 PALSLVSELVQVKLLEKGAGIGYGETYITPQAEWIGTVPIGYADGWLRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + G I+G++ MD M + S G + + G D I + VA Sbjct: 301 -------LVAGEYCEIVGRVCMDQLMIRLPRSFPA--GTKVTLIGEDNGQCITMQKVAEQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 LETIHYEVACTLSARVPREY 371 >gi|189485368|ref|YP_001956309.1| alanine racemase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287327|dbj|BAG13848.1| alanine racemase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 385 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 26/375 (6%) Query: 8 RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++ID + N + ++ + + V+K NAYG G +A AGV ++S+E Sbjct: 21 WVEIDRSDFHFNLKKIKEYIAKDTKIMVVIKANAYGHGGVALAKETQRAGVAWIGISSLE 80 Query: 67 EGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124 EG++ R ++ I +L I P ++ +L P IS++ L + Sbjct: 81 EGIQFREAGIKSNILILGNIFPFENFQVAVAHSLTPTISTMSGLAALEYWAVRLNKKINF 140 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G R+G+ + + ++ + +H A AD QL+ F Sbjct: 141 HLKIDSGMGRIGVVPEASYPILQKIVQMPKTNMTGMYTHFAVADTDPV-FTQQQLDIFTN 199 Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVT 237 ++ + A A+S+ + H + RPGIS+YG T + +++V++ Sbjct: 200 IVKFARINLGLKFIAHAANSAALFRNKRTHLDMVRPGISIYGLTPFKHAERFLKLKSVLS 259 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +II ++K AG VSYG R S+IA +GYADGY LS Sbjct: 260 WKTKIIFLKKVPAGFCVSYGRTFVTNRASVIATIPVGYADGYNRLLSNKCD--------- 310 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 ++G PI G+ITMDMTM D+TD + +GD + + G IK+D++A T Sbjct: 311 --VLVRGKRCPIAGRITMDMTMIDVTDVKGVTLGDEVVLIGVQGKEHIKVDELAKIQNTI 368 Query: 354 NYDLLVRIGTRYAKF 368 NY++ I R + Sbjct: 369 NYEVTSSISVRVPRI 383 >gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] Length = 825 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 155/374 (41%), Gaps = 25/374 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L+AL N + + L + + ++K N YGLG ++A L + V V Sbjct: 463 TTLEVNLSALVQNLNFYRSYLKQDTKLVCMIKANGYGLGAVEVAKTLQDHRVDYLAVAVA 522 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + A I ++ K IFD L P + S L + +P Sbjct: 523 DEGVALRKHGVTANIMIMNPEMSS-FKTIFDYELEPEVYSFRLLEALIEEAEKEGITQYP 581 Query: 124 YALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 +++DTG +RLG E L + S+ + D ++ Q Sbjct: 582 IHIKLDTGMHRLGFDPINDIERLISILKKHQNTIIPRSVFSHFVGSDSDHFDDFSAQQFS 641 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F T I + +S+GIL P+ + R G+ LYG + N+ Sbjct: 642 LFDTASKQLQSAFTHHILRHINNSAGILHFPDRQLDMCRLGLGLYGINSRDNQIINNVC- 700 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + I+ + K + E V Y + + R++++A IGYADG L Sbjct: 701 -SLRTTILQMHKIGSNETVGYSRKGTVERETIVAAIPIGYADGLDRRLGNR--------- 750 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 + G+ P LG I MD+ M D+TD + GD ++IFG ++ + ++ T Y Sbjct: 751 -NCYCLVNGHKAPYLGNICMDVAMIDVTDIP-CKEGDSVEIFGDNLPVTVLSDTLDTIPY 808 Query: 356 DLLVRIGTRYAKFY 369 ++L I R + Y Sbjct: 809 EVLTSISERVKRVY 822 >gi|218768673|ref|YP_002343185.1| alanine racemase [Neisseria meningitidis Z2491] gi|20137238|sp|Q9JTA6|ALR_NEIMA RecName: Full=Alanine racemase gi|121052681|emb|CAM09022.1| alanine racemase [Neisseria meningitidis Z2491] gi|319410904|emb|CBY91298.1| alanine racemase [Neisseria meningitidis WUE 2594] Length = 352 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASVYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|329121169|ref|ZP_08249797.1| alanine racemase [Dialister micraerophilus DSM 19965] gi|327470251|gb|EGF15712.1| alanine racemase [Dialister micraerophilus DSM 19965] Length = 365 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 103/370 (27%), Positives = 153/370 (41%), Gaps = 25/370 (6%) Query: 11 IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L AL++N + + N A++K + YG G G V V+EG+ Sbjct: 8 ISLKALRHNLRLIRSTVPENVELMAILKSDGYGHGSIATLNIALEEGYSSAAVARVDEGI 67 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYALQV 128 KLR + I+ L P ++I I V T + L V Sbjct: 68 KLRQHGFNCPIYTLGLPLPYDMPAGVANDMIMPIDDTVDLKTMEAVAAVSNKEVKVMLTV 127 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS- 187 DTG NRLG+ L + +F +L +H+A AD+ QL+ F + Sbjct: 128 DTGMNRLGIHLDKIPEFLKKLKRYPHLKLHGTFTHMATADEKDKTFAIAQLKEFEKALEL 187 Query: 188 --HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARII 243 K S A+S+GIL P + L RPGI +YG + K+ +Q V++ + I Sbjct: 188 LPKTKDFRISAANSAGILELPQSLYNLARPGIIMYGIYPSGDMKKNLDLQPVMSLISHCI 247 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ GE V YG K A IGYADGYP +LS G I Sbjct: 248 HVQTLKKGETVGYGATYKAEHMMKTATIPIGYADGYPRSLSN-----------KGYVLIG 296 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLV 359 G PI+G+I MD M + D ++ GD + + G I +++VA + T Y+L+ Sbjct: 297 GKKRPIVGRICMDQLMVAVDD--TVRTGDQVVLIGEQGNEKITIEEVAELAETIPYELMC 354 Query: 360 RIGTRYAKFY 369 R + Y Sbjct: 355 IF-KRIIRVY 363 >gi|116872288|ref|YP_849069.1| alanine racemase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460815|sp|A0AH04|ALR_LISW6 RecName: Full=Alanine racemase gi|116741166|emb|CAK20286.1| alanine racemase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 368 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + L N AVVK NAYG G + A AG + F V Sbjct: 6 HRPTWIEIDREAIRANIKNEQHRLPENVALWAVVKANAYGHGIIETAKTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR + ++ G ++ + N I S + ++ Sbjct: 66 AILDEALALREAGFRNDFILVLGATRQEDANLAAKNNI---SLTVFREDWLHNLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA L I +H A AD + QL++ Sbjct: 123 RIHLKVDSGMGRLGIRSTEEAKQIEARIALDHQLILEGIYTHFATADQLETSYFEQQLDK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA- 238 F T+++ ++ + +S+ LL P F R GIS+YG T + + + + Sbjct: 183 FTTILTSFESRPTFVHTANSAASLLQPQMDFDAVRFGISMYGLTPSLEIKNSLPFELKPA 242 Query: 239 ---EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGY--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DD A G Sbjct: 294 ---HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAADYLG 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLSDRIPRKY 366 >gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] Length = 851 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 170/374 (45%), Gaps = 22/374 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++IDL AL +N ++ G AV+K +AYG G + A + G V Sbjct: 481 DRPTTVRIDLDALASNVQAIRQAVG-VPVMAVLKADAYGHGAVRSARTVLLNGASSLAVA 539 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++ E + LR A I +L Q + + + + G+ Sbjct: 540 TLGEALHLRQADIAAPILILGYTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKA 599 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++DTG RLGL++++A+DF ++ I +H A AD+ + +QL+RF Sbjct: 600 QVHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTHFANADEADASFFGLQLQRF 659 Query: 183 RTLISH--YKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 +TL+ +G+ + +S+ ++ P+ + + R GI+LYG + +Q V+ Sbjct: 660 QTLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLE 719 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + +R+ AG +SYG +R S IA +GYADG+ Sbjct: 720 FQTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWR---------- 769 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G VP++G++ MD M D+T+ S++ GD + + G I+ ++VA GT Sbjct: 770 -EVLIHGQRVPVVGRVCMDYAMIDVTELDSVQRGDQVVLIGQQGTDRIRAEEVAEWLGTN 828 Query: 354 NYDLLVRIGTRYAK 367 Y+++ I R + Sbjct: 829 AYEVVSAILPRVPR 842 >gi|52000508|dbj|BAD44772.1| alanine racemase [Streptomyces lavendulae subsp. lavendulae] Length = 378 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 159/378 (42%), Gaps = 29/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL A++ N ++ A + + AVVK NAYG G A A AG + EE Sbjct: 10 AEIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEA 69 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 ++LR Q RI G + +T++ +S + + + G + L+ Sbjct: 70 LELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLK 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRT 184 DTG R G + + + + + SH ACAD+P +QL+ FR Sbjct: 130 ADTGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRD 189 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ----TV 235 +++ +A+S L P HF L R G+++YG + P Q Sbjct: 190 MLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T A + L++ AG VSYG ++ +A+ GYADG P SG Sbjct: 250 MTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASGR--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + G + G+I MD + D+ + L E GD I G + +D A A+ Sbjct: 301 --GPVLVAGKIRRAAGRIAMDQFVVDLGEDL-AEAGDEAVILGDAERGEPTAEDWAQAAH 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ RIG R + Y Sbjct: 358 TIAYEIVTRIGGRVPRVY 375 >gi|229821553|ref|YP_002883079.1| alanine racemase [Beutenbergia cavernae DSM 12333] gi|259710063|sp|C5BZY7|ALR_BEUC1 RecName: Full=Alanine racemase gi|229567466|gb|ACQ81317.1| alanine racemase [Beutenbergia cavernae DSM 12333] Length = 378 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 153/379 (40%), Gaps = 27/379 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +DL A+ N + ++G A AVVK +AYG G +A A AG V + Sbjct: 4 PARAVVDLGAIAGNVARLREVAGPAEVMAVVKGDAYGHGLVPVARAALGAGATWLGVAQL 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E + LR AR +L +++ GV Sbjct: 64 GEALTLRAAGVDARTLTWLYAPGAPLAEALRADLDLSVAAPWALDEVVGAARESGVVARV 123 Query: 125 ALQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG R GL L E LD + + + SHLA ADD S + + Q Sbjct: 124 HLKVDTGMGRSGLFLDEWGGLLDAAVRAQAAGEIDVVGVWSHLASADDAESGLTAEQTRV 183 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQ 233 F + + LA+S+G L HF L RPGI++ G + ++ + Sbjct: 184 FAEAVRRAEDAGAHLEVRHLANSAGTLAHAATHFDLVRPGIAVVGLSPFGDRTADELGLT 243 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + EA + +++ A AG+ VSYG + + + +AV +GYADG P G Sbjct: 244 PAMRLEAELTIVKHAPAGQGVSYGHEYTTSEATSLAVVPLGYADGIPRHAGG-------- 295 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G + I G++ MD + D+ + GD +FG + D A A Sbjct: 296 ---AGPVQVGDTWSRIAGRVCMDQFVLDLGAGANAHAGDVAVLFGSGADGEPTAADWARA 352 Query: 350 SGTTNYDLLVRIGTRYAKF 368 + T Y+++ R+G R + Sbjct: 353 ADTITYEIVTRLGPRVPRV 371 >gi|91215530|ref|ZP_01252501.1| alanine racemase [Psychroflexus torquis ATCC 700755] gi|91186482|gb|EAS72854.1| alanine racemase [Psychroflexus torquis ATCC 700755] Length = 367 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 160/370 (43%), Gaps = 19/370 (5%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 RL+IDL AL+ N+ + + LS + VVK AYG I L GVQ V + Sbjct: 7 TRLEIDLQALEYNYKLLKSYLSTKTKIMGVVKAFAYGTDSIIIGKHLVKIGVQHLAVAYI 66 Query: 66 EEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EEGV+LR +A I V Y Q+ I F + + S Sbjct: 67 EEGVRLRKAGVEAPILVFYPQLEEIQKLIDFQLTPSVYNHRFLEGLCEELALHEIDSFGI 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFR 183 L+++TG NRLG + + + ++ ++ + +HLA + + Q+ +F Sbjct: 127 HLKINTGLNRLGFEIDDLNTILQHLKAERKIKMVGLFTHLAASGNKDEVEFTKGQISKFE 186 Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 ++ E+ + +SSGIL P+ + + R GI+LYG + + ++ V + Sbjct: 187 QARQFFENHLPYIFESHICNSSGILNYPDAEYDMVRAGIALYGYGNNPKEHKMLKAVASL 246 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I +R G+ V Y + K R++ IA +GYADG + Sbjct: 247 KTVIAQLRMIQKGDSVGYERKFKAERETKIATLPLGYADGISRSFGNG----------KA 296 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + I PI+G + MD M D+T E GD ++IFG + + D + T Y+++ Sbjct: 297 QVLINHQKAPIIGNVCMDTLMLDVTGI-DCEEGDEVEIFGKNHTVLDFDIEQQTIPYEVI 355 Query: 359 VRIGTRYAKF 368 RI R + Sbjct: 356 TRISQRVTRV 365 >gi|296115772|ref|ZP_06834398.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769] gi|295977749|gb|EFG84501.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769] Length = 390 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 128/368 (34%), Positives = 189/368 (51%), Gaps = 16/368 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAA-VVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL A+ N+ + A VVK +AYGLG ++APAL AG F+V + Sbjct: 30 ATLRIDLDAIAANYRLVRDRVSPTTICAAVVKADAYGLGLTQVAPALQRAGADHFYVAHL 89 Query: 66 EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 EEG+ LR + TP RIFVL+G P E+ +L PV++S Q+ + + P Sbjct: 90 EEGIALRRHVTPATRIFVLHGPLPDTEEEFTAHDLTPVLNSAGQVAGWRALARRLDRVLP 149 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +Q+DTG +R GLS+ + ++ + L+ISHLACAD P + N+ Q R Sbjct: 150 AVIQLDTGMSRFGLSMADVRAIADDAGLLAGIRPDLVISHLACADTPQNPANAQQRARLL 209 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + + +L++SSGI LGP+YHF + RPG +LYG ++P++ VV ARI+ Sbjct: 210 EMAAMLPAAPLALSASSGIFLGPDYHFDMVRPGAALYGIAPNEATANPLRPVVRLSARIL 269 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R +AG+ V YG + + IA GYADG G + Sbjct: 270 QVRDIVAGDGVGYGLTYRASGPRRIATIGAGYADGCLRQ-----------GAHHGAAWFG 318 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVG-DYIQ-IFGPDIKLDDVALASGTTNYDLLVRI 361 +PILG+I+MD DITD ++G D + GP +D A A+GT Y++L + Sbjct: 319 ATRLPILGRISMDSITIDITDVPVGQLGPDMAVDLLGPHYDVDAAARAAGTIGYEILTSL 378 Query: 362 GTRYAKFY 369 G RY + Y Sbjct: 379 GHRYHRAY 386 >gi|94310342|ref|YP_583552.1| alanine racemase [Cupriavidus metallidurans CH34] gi|166969425|sp|Q1LNJ3|ALR_RALME RecName: Full=Alanine racemase gi|93354194|gb|ABF08283.1| alanine racemase 2, PLP-binding protein [Cupriavidus metallidurans CH34] Length = 368 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + + +R AVVK NAYG G ++ L F + Sbjct: 3 RPIQAVIHQPALANNLEVVRRQAPASRIWAVVKANAYGHGIRRVFAGLKA--ADGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR Q I +L GI Q+ + + + + +L Sbjct: 61 LSEAVLLRDLGWQGPILLLEGIFQAQDVPLLEQYRLTTAVHCEEQLRMLELARPKGPLAI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG NRLG + + + ++H + AD + Q+E F Sbjct: 121 QLKLNTGMNRLGFRPAQYRAAWERARTMSCIGSIVHMTHFSDADSKRGI--AHQVEAFEA 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 ++ G E S+A+S+ +L P H RPGI LYGG+ +Q ++ + Sbjct: 179 ATANLPG-EVSMANSAAVLWHPQAHRNWVRPGIILYGGSPTGVSSDIAETGLQPAMSLHS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I I+ G+ V YG R + V A GYADGYP G +P Sbjct: 238 ELIGIQDLQPGDTVGYGSMFTADRAMRVGVVACGYADGYPRHAVGWGERRAP-------V 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T +VG + ++G + +DDVA ASGT Y+L+ Sbjct: 291 LVDGVRTQLVGRVSMDMICVDLTPCPKAKVGTPVTLWGHGLPIDDVAAASGTVGYELMCA 350 Query: 361 IGTRYA 366 + R Sbjct: 351 LAPRVP 356 >gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] Length = 825 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 158/373 (42%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ N + + + + + ++K +AYG G +IA L + V V Sbjct: 464 TTLEVNLNAVVKNLNHYRSFMKPHTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVA 523 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + I ++ K +FD +L P + S L K P Sbjct: 524 DEGVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFP 582 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + + + SH AD D ++ Q E Sbjct: 583 VHIKLDTGMHRLGFDPHKDMDELIRRLKRQNAIIPRSVFSHFVGADSDDFDTFSAQQFEL 642 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F+ I + +S+GI P+ + R G+ LYG + NK + Sbjct: 643 FKLGADKLQAAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINSRNNKIINNVS-- 700 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ I + AGE + Y + L RDSLIA IGYADG LS Sbjct: 701 TLKTTILQIHQLPAGESIGYSRKTYLERDSLIAAIPIGYADGLDRRLSNRR--------- 751 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +G I MD+ M D+TD + GD ++IFG + + ++ A T Y+ Sbjct: 752 -GYCLVNGQKAEYVGNICMDVAMIDVTDI-DCKEGDSVEIFGDHLPVTVLSDAIDTIPYE 809 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 810 VLTGISNRVKRVY 822 >gi|268597531|ref|ZP_06131698.1| alanine racemase [Neisseria gonorrhoeae FA19] gi|291043413|ref|ZP_06569134.1| alanine racemase [Neisseria gonorrhoeae DGI2] gi|268551319|gb|EEZ46338.1| alanine racemase [Neisseria gonorrhoeae FA19] gi|291012649|gb|EFE04634.1| alanine racemase [Neisseria gonorrhoeae DGI2] Length = 375 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 NEF+R ++I L L++N+ + + G + AVVK +AYG G + A AL + Sbjct: 20 RNEFMRPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 77 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +++EG++LR I +L G+ E + + Sbjct: 78 FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWK 137 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +R G + + + SH +CAD+P S + +Q+ Sbjct: 138 KPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQM 197 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E F +G E SLA+S+ IL P R G++LYG + ++ V+ Sbjct: 198 EAFDLGTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLS 256 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 RI R + YG ++ + + + A GYADGYP Sbjct: 257 TRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSP 305 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ Sbjct: 306 VAVDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMC 364 Query: 360 RIGTRYAKFY 369 I R Y Sbjct: 365 NI-KRAKFTY 373 >gi|322386107|ref|ZP_08059744.1| alanine racemase [Streptococcus cristatus ATCC 51100] gi|321269876|gb|EFX52799.1| alanine racemase [Streptococcus cristatus ATCC 51100] Length = 368 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 150/376 (39%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL+A+ N + A + + AVVK NAYG G ++ + V F V Sbjct: 6 HRPTKAVIDLSAIAFNIEQIAAHIPQSVQKWAVVKANAYGHGAVPVSQHIQPL-VDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + ++S+ L + Sbjct: 65 SNIDEALELREAGIAKSILILGVSSLEAVPLAIQQQITLTVASLAWLEELLNQQADLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G R+G + + + I +H A AD+ + QL RF Sbjct: 125 TVHIKIDSGMGRIGFRDSQEAQQAISRLQAAGAVVEGIFTHFATADELDTSHFVAQLNRF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + ++S + + +S+ L R G +YG ++ + ++ ++ Sbjct: 185 KEILSELAFLPPVVHASNSATTLWHSETIMNAVRLGDIIYGLNPSGRVLDLPYEVKPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ +++ AG V YG +I +GYADG+ + G D Sbjct: 245 LESALVHVKEIQAGAHVGYGATYTSDSQQIIGTIPLGYADGWTRDMQGFD---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 I G PI+G+++MD + + G + + G I DVA GT Sbjct: 295 --VLIDGQRCPIVGRVSMDQITVRLPRVYPL--GTQVVLIGQSGAELITATDVAEKRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 351 NYEVVCLISDRVPREY 366 >gi|221196747|ref|ZP_03569794.1| alanine racemase [Burkholderia multivorans CGD2M] gi|221203416|ref|ZP_03576435.1| alanine racemase [Burkholderia multivorans CGD2] gi|221177350|gb|EEE09778.1| alanine racemase [Burkholderia multivorans CGD2] gi|221183301|gb|EEE15701.1| alanine racemase [Burkholderia multivorans CGD2M] Length = 373 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AVVK NAYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + + + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELVERHRLTVAVHCDEQLDLLIAARPQQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ QL +F Sbjct: 121 QLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANADEGE---IDWQLAQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 + G E +L++S+ L P H RPG LYG + P+ +T + Sbjct: 178 ATAGIPG-ERTLSNSAAALWHPRAHRDWVRPGTILYGASPTGASRHIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ AGE V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQSLAAGETVGYGRRFTAERPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|167563210|ref|ZP_02356126.1| alanine racemase [Burkholderia oklahomensis EO147] gi|167570394|ref|ZP_02363268.1| alanine racemase [Burkholderia oklahomensis C6786] Length = 356 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 150/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + + +++ A+VK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLTVVRRHAAHSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD + Q+ F Sbjct: 121 QLKMNSGMNRLGYTPEKFRAAWERARACPGIGQITLMTHFSDADSERG--VADQIATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAEGIAGAR-SLANSAAVLWHPSTHFDWVRPGIMLYGASPSGRSADIADKGLKPTMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG I V A GYADGYP G Sbjct: 238 ELIAVQTLAKGQTVGYGSMFAAQDTMRIGVVACGYADGYPRIA-----------PEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 VVDGVRTRIVGRVSMDMITVDLTPVPQAGVGSRVELWGETLPIDDVAAQCGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|86361167|ref|YP_473054.1| alanine racemase protein [Rhizobium etli CFN 42] gi|86285269|gb|ABC94327.1| alanine racemase protein [Rhizobium etli CFN 42] Length = 377 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 191/365 (52%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ G + FFV E Sbjct: 23 LTIDLAALGRNYSKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82 Query: 69 VKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 V+LR + A+IFVL G+ PG E ++ ++PV++S+ Q + S P L Sbjct: 83 VRLRPALAKAAQIFVLNGLQPGSELACAESGIVPVLNSLAQWRQWSETARRLKRSLPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG +E + + ++ I+SHLACADD S N Q+ + Sbjct: 143 QFDTGMSRLGFPEEERAELAAAIRDGANVEILFIMSHLACADDLESSQNGEQIAEMARIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G + S A+S G+ LG YH L RPGI+LYGG +PM+ V+ + ++ R Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPNAGGKNPMEPVLRLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 +G + YGG + +A A GYADG P +L G + KG Sbjct: 263 TVPSGTKIGYGGAYVTRSQTRLATIAAGYADGLPRSLGDR-----------GAVYHKGTR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD DIT + +G +++ GP+ L+DVA +GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSATVDITALPEGALSLGSLVEVLGPNQTLEDVAGDAGTISYEILTGLGDR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YDRHY 376 >gi|293398716|ref|ZP_06642892.1| alanine racemase [Neisseria gonorrhoeae F62] gi|291610856|gb|EFF39955.1| alanine racemase [Neisseria gonorrhoeae F62] Length = 375 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 NEF+R ++I L L++N+ + + G + AVVK +AYG G + A AL + Sbjct: 20 RNEFMRPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 77 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +++EG++LR I +L G+ E + + Sbjct: 78 FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWK 137 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +R G + + + SH +CAD+P S + +Q+ Sbjct: 138 KPVKVWLKMDSGMHRTGFFPHDYTSAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQM 197 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E F +G E SLA+S+ IL P R G++LYG + ++ V+ Sbjct: 198 EAFDLGTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLS 256 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 RI R + YG ++ + + + A GYADGYP Sbjct: 257 TRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSP 305 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ Sbjct: 306 VAVDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMC 364 Query: 360 RIGTRYAKFY 369 I R Y Sbjct: 365 NI-KRAKFTY 373 >gi|325693570|gb|EGD35489.1| alanine racemase [Streptococcus sanguinis SK150] Length = 369 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N + L AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAQLPQTTEKWAVVKANAYGHGAIEVSRYIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALSLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPRAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|320536161|ref|ZP_08036211.1| alanine racemase [Treponema phagedenis F0421] gi|320146997|gb|EFW38563.1| alanine racemase [Treponema phagedenis F0421] Length = 379 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 156/383 (40%), Gaps = 29/383 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I L L+ N + L + VK +AYG G ++A A AGV V Sbjct: 2 RATKAIIHLDNLQYNIAEIKKRLKPGVKICLPVKADAYGHGAFRVAVAAIRAGVSSLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSH 122 S++EG+ LR A I L + I + N+ P VI S + Sbjct: 62 SIQEGIDLRNAGIVAPIISLSLPILEEIHSIIEYNIHPLVIDSEFIHALNEEAARMKTVQ 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQL 179 L++DTG NR+G ++A+ +L + +H + AD S QL Sbjct: 122 AVHLKIDTGMNRIGCKPEDAITLAAEIVQLPNLKLEGVCTHFSVADSVSPENIAYTKKQL 181 Query: 180 ERFRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDK--INKSHPM 232 F + KGI+ + ++ L P F + RPGI +YG + P+ Sbjct: 182 ALFTQTLDALRAKGIDPGIVHAANSGAVLQYPEAQFDMVRPGIIVYGYPPSDCLADKIPL 241 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ ++++LI+ G +SY + +D+ IA IGYADG LS Sbjct: 242 KPVMELVSQVVLIKCTPQGSDISYDRKWHADKDTFIATLPIGYADGLMRALS-------- 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP------DIKLDDV 346 G K I PI+G+I MD M D+ ++ D IFGP + ++ Sbjct: 294 ---PGLKVRIGDTFYPIVGRICMDQCMVDLGSEPTVTRWDTAVIFGPSENSVKNNSAKEL 350 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A +GT Y++ I R + Y Sbjct: 351 ATIAGTIPYEITCDINKRVPRVY 373 >gi|187250740|ref|YP_001875222.1| alanine racemase [Elusimicrobium minutum Pei191] gi|186970900|gb|ACC97885.1| Alanine racemase [Elusimicrobium minutum Pei191] Length = 369 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 145/378 (38%), Gaps = 28/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFV 62 IDL LK+N + + +L + + V+K NAYG G K+A Sbjct: 6 RPTAAVIDLENLKHNINYVRSLLNPKTKMLFVLKANAYGHGAVKLAKYAQENNLCDMLGT 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMSCGV 120 SVEEGV+LR + + VL ++P + I + S Sbjct: 66 ASVEEGVELRENGIKLPVLVLGSVYPFEAFETAAAYDLAITIASLSAAKAVCEIASKINK 125 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + ++ DTG R+G K + + +HL+ D S QL Sbjct: 126 TVYCHVKQDTGMGRIGTRRTGVAKILQELKQNKNIIIEGLYTHLSSTDS-DEVFTSCQLG 184 Query: 181 RFRTLI----SHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F + +E ++ G L P F + R G+ YG + + + V Sbjct: 185 YFEEAALAAKADNIDVEIFHACATMGTLFAPRGRFDMVRLGLGAYGM---VKEDKNFKPV 241 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +++I+ ++ +SY + IA +GY DGY +SG Sbjct: 242 LSLKSKIVFVKDVKKDFAISYNQSFIAPKQMHIATVPVGYGDGYMRAMSG---------- 291 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 + I G ++G ITMDM M D+TD VGD + + G +I ++A + Sbjct: 292 -KAEVLIAGKRCKVIGNITMDMIMVDVTDVQEATVGDEVVLIGKQGDEEITAWELASWAN 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++ I R +FY Sbjct: 351 TIAYEITTLITARVPRFY 368 >gi|253996549|ref|YP_003048613.1| alanine racemase [Methylotenera mobilis JLW8] gi|253983228|gb|ACT48086.1| alanine racemase [Methylotenera mobilis JLW8] Length = 361 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 13/365 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L AL++N ++ + +++ AVVK N YG G +A L F V Sbjct: 2 RPILTTVSLNALRHNLSVVHKFAPHSKIMAVVKANGYGHGLINVAHGLSA--ADGFAVLG 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G+ QE + + V+ + Sbjct: 60 INEAMDLRDAGFQQTILLLEGVFCAQELNVASNLGLNVVIHSQPQLEMLESAVLNKPMHV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + +++H A ADD + Q Sbjct: 120 HLKMNSGMNRLGFQPEAFNRAYERLLACENVADITLMTHFATADDETGI---EQPYNLFK 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 + + SLA+S+ IL P H RPGI LYG + + ++ + + + Sbjct: 177 TTTQGLNLPVSLANSATILRHPKAHADWVRPGIMLYGASPVGDTAAATYGLMPAMQFTSE 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +++ AGE V YG + TR + I + A GYADGYP G Sbjct: 237 IIGVQEVKAGETVGYGNRFTATRSTRIGIVACGYADGYPRHAG-----LVSGQSSGAPIA 291 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + LG+++MDM D+TD + +G ++++G + +D VA AS T Y+LL + Sbjct: 292 VAGQLTNTLGRVSMDMLFCDLTDIPNANIGSPVELWGKQVPVDAVAAASDTVGYELLCAV 351 Query: 362 GTRYA 366 R Sbjct: 352 APRVP 356 >gi|309378149|emb|CBX23217.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 352 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|169795500|ref|YP_001713293.1| alanine racemase 1, biosynthetic [Acinetobacter baumannii AYE] gi|213158560|ref|YP_002319858.1| alanine racemase [Acinetobacter baumannii AB0057] gi|215482987|ref|YP_002325192.1| alanine racemase [Acinetobacter baumannii AB307-0294] gi|301345094|ref|ZP_07225835.1| alanine racemase [Acinetobacter baumannii AB056] gi|301510834|ref|ZP_07236071.1| alanine racemase [Acinetobacter baumannii AB058] gi|301595321|ref|ZP_07240329.1| alanine racemase [Acinetobacter baumannii AB059] gi|169148427|emb|CAM86293.1| alanine racemase 1, biosynthetic [Acinetobacter baumannii AYE] gi|213057720|gb|ACJ42622.1| alanine racemase [Acinetobacter baumannii AB0057] gi|213987304|gb|ACJ57603.1| alanine racemase [Acinetobacter baumannii AB307-0294] Length = 356 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 169/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E + + VI Q + K ++ ++ Sbjct: 66 IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHIKE 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 183 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I Sbjct: 243 LNHIKAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDS 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ +R Sbjct: 292 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 350 Query: 365 YAK 367 + Sbjct: 351 PVR 353 >gi|240113626|ref|ZP_04728116.1| Alr [Neisseria gonorrhoeae MS11] gi|254494089|ref|ZP_05107260.1| alanine racemase [Neisseria gonorrhoeae 1291] gi|268599686|ref|ZP_06133853.1| alanine racemase [Neisseria gonorrhoeae MS11] gi|226513129|gb|EEH62474.1| alanine racemase [Neisseria gonorrhoeae 1291] gi|268583817|gb|EEZ48493.1| alanine racemase [Neisseria gonorrhoeae MS11] Length = 352 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGDSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|332363899|gb|EGJ41678.1| alanine racemase [Streptococcus sanguinis SK355] Length = 369 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSKHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR RI VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKRILVLGVSDLAALPLARKGKVSLTVASLEWLDLALAAEKDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + +T Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALT 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVDAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G P++G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGKRCPLVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|324993504|gb|EGC25424.1| alanine racemase [Streptococcus sanguinis SK405] Length = 369 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLDWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVTPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + S + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|261400907|ref|ZP_05987032.1| alanine racemase [Neisseria lactamica ATCC 23970] gi|313667972|ref|YP_004048256.1| alanine racemase [Neisseria lactamica ST-640] gi|269209271|gb|EEZ75726.1| alanine racemase [Neisseria lactamica ATCC 23970] gi|313005434|emb|CBN86869.1| alanine racemase [Neisseria lactamica 020-06] Length = 352 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|325134740|gb|EGC57378.1| alanine racemase [Neisseria meningitidis M13399] gi|325144906|gb|EGC67192.1| alanine racemase [Neisseria meningitidis M01-240013] gi|325205630|gb|ADZ01083.1| alanine racemase [Neisseria meningitidis M04-240196] Length = 352 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLIRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|255067061|ref|ZP_05318916.1| alanine racemase [Neisseria sicca ATCC 29256] gi|255048657|gb|EET44121.1| alanine racemase [Neisseria sicca ATCC 29256] Length = 352 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 16/366 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L++N+ ++ + G + AV+K +AYG G + A AL N F V + Sbjct: 2 RPLNARIRLDNLRHNYQTLKQIHGG-KMLAVIKADAYGHGAVRCAHALSNL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+E V+LR I +L G+ E I D + Sbjct: 60 VDEAVELRESGITNPIVLLEGVFEATEYAIVDKYNLWPGVGSQWQLEALIAHHWQNPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G K + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYTSAYTALKQCKHVDSIVKFSHFACADEPDNGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP S I+G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAIEG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ D+ +G ++++G + +++VA A+G Y++ + R Sbjct: 288 KRSRIIGRVSMDMITVEL-DASQEGLGAEVELWGDVVNINEVAEAAGMIPYEIFCNV-KR 345 Query: 365 YAKFYT 370 Y+ Sbjct: 346 AKFTYS 351 >gi|308187068|ref|YP_003931199.1| alanine racemase 2, catabolic [Pantoea vagans C9-1] gi|308057578|gb|ADO09750.1| alanine racemase 2, catabolic [Pantoea vagans C9-1] Length = 356 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 158/367 (43%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL++N + + +R +VVK NAYG G E++ AL F + Sbjct: 2 SRPIVATINQQALRHNLTVVRQAAPASRVWSVVKANAYGHGIERVREALSA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G ++ + D + S Sbjct: 60 NMEEAILLREQGWKKPILLLEGFFQPEDLQLIDRYRLTTSVHSNWQIKALASASLSAPVD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++ +++H A A++P + +Q Sbjct: 120 IYLKMNSGMNRLGFRPEQVSGAWQKLRALSNVGEMTLMAHFADAENPQGLIAPLQRV--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAAGLNCPRSLSNSACTLWHPEAHFDWVRPGIILYGASPSGDWQDIAGSGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +++ AG+ V YG + + I V A GYADGYP G Sbjct: 237 SEIIAVQQLQAGDGVGYGYRYHASTAQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G M ++G ++MDM D+T +G ++++G +K+D VA A+GT Y+L+ Sbjct: 286 VCVDGVMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGEQVKIDQVAKAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|253731093|ref|ZP_04865258.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725168|gb|EES93897.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 390 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 155/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 21 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 80 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 81 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 140 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + +H ACAD+ + + Q +RF+ +++ Sbjct: 141 DTGMGRLGIKDTNTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 199 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDK----INKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 200 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQPKVKVHLKPSVQLIANV 259 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 260 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 307 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 308 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 365 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 366 CNLSRRLPRIY 376 >gi|332850737|ref|ZP_08432984.1| alanine racemase [Acinetobacter baumannii 6013150] gi|332866952|ref|ZP_08437278.1| alanine racemase [Acinetobacter baumannii 6013113] gi|332730574|gb|EGJ61890.1| alanine racemase [Acinetobacter baumannii 6013150] gi|332734333|gb|EGJ65460.1| alanine racemase [Acinetobacter baumannii 6013113] Length = 358 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 169/363 (46%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 10 IDRQALQYNLNRVKQLAANSKIVSMVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLE 67 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R + + ++ G+ E + + VI Q + K ++ ++ Sbjct: 68 IRELGFEQPVTLIEGVFSEDEMPVAIEQKFECVIHHQQQFEWLIKHKQAYIAQGLKVWVK 127 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 128 LNSGMNRLGFKNPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLHIKE 184 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 I AS +S+ I P +F RPGI LYG + +K ++ V+T A II Sbjct: 185 TCDPILASCCNSAAIFKWPELNFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIA 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + AGE V YG + IA+ +IGY DGYP I Sbjct: 245 LNHIKAGEHVGYGSTFCAQQAMDIAIVSIGYGDGYPRAY-----------VKQNFVAIDS 293 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D+T++ +++G ++++G +DDVA A+GT Y+LL R+ +R Sbjct: 294 KLCPVVGRVSMDMIAIDVTNT-QVKLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSR 352 Query: 365 YAK 367 + Sbjct: 353 PVR 355 >gi|332360532|gb|EGJ38342.1| alanine racemase [Streptococcus sanguinis SK1056] Length = 369 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 147/376 (39%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ + Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWMDLALDAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ + QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEVIHRLQAAGAVAEGIFTHFATADEVDHYKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G + PI+G+++MD + S + G + + G I + DVA GT Sbjct: 296 --VLIDGQLCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITVTDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|258588448|pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames) gi|258588449|pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames) Length = 397 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVV NAYG +A AG Sbjct: 1 MEEAPFYRDTWVEVDLDAIYNNVTHIKEFIPSDVEIFAVVXGNAYGHDYVPVAKIALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + KL Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQKEWVDEAIKLW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ +E F + +L + +H A AD+ + Sbjct: 121 DGSSTMKYHINFDSGMGRIGIRERKELKGFLKSLEGAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLIS--HYKGIEASLASSSG---ILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S G++ ++ L F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ ++ I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 241 FLPFKLEPALSLHTKVAHIKQVIKGDGISYNVTYRTKTEEWIATVAIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ------------EVLVNGKRVPIVGRVTMDQFMIHLP--CEVPLGTKVTLIGRQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 347 ATEVAEYSGTINYEIITTISFRVPRIF 373 >gi|294101224|ref|YP_003553082.1| alanine racemase [Aminobacterium colombiense DSM 12261] gi|293616204|gb|ADE56358.1| alanine racemase [Aminobacterium colombiense DSM 12261] Length = 374 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 154/378 (40%), Gaps = 23/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 RL++DL ++NN+ ++ G + R VVK +AY LG +KI L + GV F V Sbjct: 4 RPTRLEVDLEKVRNNYRAIRKHVGESVRIFGVVKGDAYNLGADKIGRVLADMGVDFFAVA 63 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122 + +E + LR ++ I VL G + + I+ S + Sbjct: 64 TGDEAISLRESGIESPILVLGPSPYGIAEEYVRLGIRAAINDKGIAKALSDASVRLQKPA 123 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G R+G EA D + L I +H A +D Q F Sbjct: 124 YGHVKIDSGMGRIGFFPHEAADAVEEISHLPGLNLEGIFTHFAISDARDLTYTYEQHSTF 183 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 +I + +S L P + RPG + G +S ++ V Sbjct: 184 VKVIGELEKRGITFSIKHCCNSGATLALPQFVMDGVRPGQLVVGMYPSKEVVRSIAIEPV 243 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + I IR AG+ +SYG + T D IAV +GY DGY LSG Sbjct: 244 FEFKTAISAIRTVPAGKKLSYGLTYETTADERIAVIPVGYHDGYSRELSGK--------- 294 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G + I G PI+G+I MD + D++ + ++GD + + G I D++A G Sbjct: 295 -GTEVLIHGKRCPIVGRICMDQALVDVSVLQNPQIGDEVVLLGKQGEETITGDEIADKIG 353 Query: 352 TTNYDLLVRIGTRYAKFY 369 T L IG R + Y Sbjct: 354 TIFTTLPNMIGKRVPRVY 371 >gi|268595182|ref|ZP_06129349.1| alanine racemase [Neisseria gonorrhoeae 35/02] gi|268548571|gb|EEZ43989.1| alanine racemase [Neisseria gonorrhoeae 35/02] Length = 375 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 19/370 (5%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 NEF+R ++I L L++N+ + + G + AVVK +AYG G + A AL + Sbjct: 20 RNEFMRPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADG 77 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +++EG++LR I +L G+ E + + Sbjct: 78 FAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWK 137 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D+G +R G + + + SH +CAD+P S + +Q+ Sbjct: 138 KPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQM 197 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E F +G E SLA+S+ IL P R G++LYG + ++ V+ Sbjct: 198 EAFDLGTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGNDDRLKPVMRLS 256 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 RI R + YG ++ + + + A GYADGYP Sbjct: 257 TRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSP 305 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ Sbjct: 306 VAVDGKLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMC 364 Query: 360 RIGTRYAKFY 369 I R Y Sbjct: 365 NI-KRAKFTY 373 >gi|331084077|ref|ZP_08333184.1| alanine racemase [Lachnospiraceae bacterium 6_1_63FAA] gi|330402439|gb|EGG82009.1| alanine racemase [Lachnospiraceae bacterium 6_1_63FAA] Length = 382 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M ++ I+L A+ N +M + + N + AV+K + YG G IA + + + Sbjct: 1 MRIQSRIQAHINLDAIDYNLKNMYDYMGKNTQIIAVLKADGYGHGAVPIAKEIEAYSYIW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 V +VEEG +LR + I +L + I + P + + SK Sbjct: 61 GIAVATVEEGRELRKAGIKKPILILGYTYEEDYDRIVKEDFQPTVFKLSMAEQLSKAAVK 120 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G +++A+ +L I +H A AD+ Sbjct: 121 ANKTLKIHIKLDTGMTRIGYRHIEDAIPEIVEISKLPNIELEGIFTHFARADETDLAPAY 180 Query: 177 VQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 QLE+++ + +GI ++S+ I+ + +F R GI LYG Sbjct: 181 QQLEKYQEFLDALKRQGISIPVKHCSNSAAIIRMQDAYFDAVRAGIILYGMYPSNEVEKD 240 Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ + ++ I I++ G +SYGG + + +A +GYADGY LS Sbjct: 241 KILLKPAMELKSHIAYIKEVEPGVEISYGGTFTTEKVTRVATIPVGYADGYSRGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G ILGK+ MD M D+T+ E D + + G D I ++ Sbjct: 298 --------KGSVLIRGKRAKILGKVCMDQFMVDVTEIPEAEELDEVTLLGKDGTDCITME 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ I R + Y Sbjct: 350 ELGELSGRFNYEFACCISKRVPRVY 374 >gi|304386876|ref|ZP_07369138.1| alanine racemase [Neisseria meningitidis ATCC 13091] gi|304339035|gb|EFM05127.1| alanine racemase [Neisseria meningitidis ATCC 13091] Length = 352 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLVRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|164688224|ref|ZP_02212252.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM 16795] gi|164602637|gb|EDQ96102.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM 16795] Length = 387 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 160/381 (41%), Gaps = 24/381 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ +I+L +K+N+HS+ L + + VVK +AYG G ++A L Sbjct: 6 LNMKRGTWAEINLNNIKHNFHSLKNTLKSDTKVCCVVKADAYGHGAVEVAKMLQQEKADY 65 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V EE V+LR I + I + + + + S ++ Sbjct: 66 FSVARFEEAVELRNNNIHTPILCMGYISECDIEEAINRYIGITVYSYEMAKIINQKAGKL 125 Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G +++DTG +RLG + +++ + I +H A AD+ + Sbjct: 126 GKKASIHIKIDTGMSRLGFLTDDNSINDILKLKELINLNIDGIYTHFATADETDKKETYL 185 Query: 178 QLERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSH 230 QLER++ +I + + +++ I+ F + R GI LYG K Sbjct: 186 QLERYKKVIDVLEKANIDIQFKHVSNTAAIIDLKELGFNMVRLGIGLYGHYPSDEVSKEV 245 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + + I I+ G VSYG + S +A AIGYADG+ T + Sbjct: 246 ELKPAMKLKTIITNIKTVAPGTKVSYGYTYEFKEASTLATLAIGYADGFDRTQNNP---- 301 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVAL 348 K I G + ++G+I MD M I + L++ + D + I G + + +D+A Sbjct: 302 --------KVMINGILCDVVGRICMDQCMVKIPEGLNVNIEDEVLIMGAEVGVTAEDLAS 353 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 354 RRGTINYEVLCSVSRRVTRDY 374 >gi|194099058|ref|YP_002002139.1| Alr [Neisseria gonorrhoeae NCCP11945] gi|240014543|ref|ZP_04721456.1| Alr [Neisseria gonorrhoeae DGI18] gi|240016989|ref|ZP_04723529.1| Alr [Neisseria gonorrhoeae FA6140] gi|240081431|ref|ZP_04725974.1| Alr [Neisseria gonorrhoeae FA19] gi|240116062|ref|ZP_04730124.1| Alr [Neisseria gonorrhoeae PID18] gi|240118348|ref|ZP_04732410.1| Alr [Neisseria gonorrhoeae PID1] gi|240121065|ref|ZP_04734027.1| Alr [Neisseria gonorrhoeae PID24-1] gi|240123896|ref|ZP_04736852.1| Alr [Neisseria gonorrhoeae PID332] gi|240128570|ref|ZP_04741231.1| Alr [Neisseria gonorrhoeae SK-93-1035] gi|260440124|ref|ZP_05793940.1| Alr [Neisseria gonorrhoeae DGI2] gi|268601728|ref|ZP_06135895.1| alanine racemase [Neisseria gonorrhoeae PID18] gi|268604061|ref|ZP_06138228.1| alanine racemase [Neisseria gonorrhoeae PID1] gi|268682520|ref|ZP_06149382.1| alanine racemase [Neisseria gonorrhoeae PID332] gi|268686962|ref|ZP_06153824.1| alanine racemase [Neisseria gonorrhoeae SK-93-1035] gi|193934348|gb|ACF30172.1| Alr [Neisseria gonorrhoeae NCCP11945] gi|268585859|gb|EEZ50535.1| alanine racemase [Neisseria gonorrhoeae PID18] gi|268588192|gb|EEZ52868.1| alanine racemase [Neisseria gonorrhoeae PID1] gi|268622804|gb|EEZ55204.1| alanine racemase [Neisseria gonorrhoeae PID332] gi|268627246|gb|EEZ59646.1| alanine racemase [Neisseria gonorrhoeae SK-93-1035] Length = 352 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|302751952|gb|ADL66129.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 372 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 157/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 3 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 62 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 63 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+P + + Q +RF+ +++ Sbjct: 123 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGD-MTTEQYQRFKDMVN 181 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 182 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 241 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 242 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 290 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 347 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 348 CNLSRRLPRIY 358 >gi|59801649|ref|YP_208361.1| hypothetical protein NGO1295 [Neisseria gonorrhoeae FA 1090] gi|81311173|sp|Q5F788|ALR_NEIG1 RecName: Full=Alanine racemase gi|59718544|gb|AAW89949.1| putative alanine racemase [Neisseria gonorrhoeae FA 1090] Length = 352 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYTSAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|268611540|ref|ZP_06145267.1| alanine racemase [Ruminococcus flavefaciens FD-1] Length = 378 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 158/384 (41%), Gaps = 32/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFV 62 + ++ L L+ N + +L SG+ AVVK +AYG G E I L + G++ F V Sbjct: 6 KRAWAEVSLPQLRKNVEIIRSLNSGSTEIMAVVKADAYGHGDEHIVRCLANDCGIRYFAV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E + +R + PQ I +L P I N+I + S + + Sbjct: 66 SNLDEAIAVRKFAPQGEILILGYTPPEYAHEISMYNIIQGVVSTEYAEAL--VQNTPQPI 123 Query: 123 PYALQVDTGFNRLGLSLQ-----EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNS 176 +++DTG R+GL A +K + +A +DDP + Sbjct: 124 RCHIKIDTGMGRIGLKHDTPQQCAAEIAEMMKIDKLSVEGIYTHFAVADSDDPDNVAYTD 183 Query: 177 VQLERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q + K +S+ + L+R GI LYG ++ P Sbjct: 184 KQEKFITDTYDVLAAQGIKLPHLHFMNSAATCYRNSERSTLSRAGIILYGLHPDVSLDIP 243 Query: 232 M--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +A I ++ G+ +SYG + R+ IA IGYADGY LS Sbjct: 244 EGLEPLMELKAVISHVKTVNKGDCISYGRTFRADREMRIATVTIGYADGYSRLLS----- 298 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G+ + G I G++ MD M D++D + GD + + G + I DD Sbjct: 299 ------SKGEILVHGKRCKITGRVCMDQLMIDVSDVPEAKAGDIVTLIGKEGDDRITADD 352 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT Y+++ I R + Y Sbjct: 353 LAQIYGTIGYEVVCGISKRVPRIY 376 >gi|289167441|ref|YP_003445710.1| alanine racemase [Streptococcus mitis B6] gi|288907008|emb|CBJ21842.1| alanine racemase [Streptococcus mitis B6] Length = 367 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVTVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGLSKKILILGVSEIEAVSLAKEYDITLTVAGLEWIQALLDKEADLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREAGEAEQAQDLLQQHGAYVEGIFTHFATADEESDTYFNTQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T++ KG+ ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILESMKGLPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYGLTPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ G + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPVGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|225023462|ref|ZP_03712654.1| hypothetical protein EIKCOROL_00320 [Eikenella corrodens ATCC 23834] gi|224943811|gb|EEG25020.1| hypothetical protein EIKCOROL_00320 [Eikenella corrodens ATCC 23834] Length = 351 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 158/365 (43%), Gaps = 17/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L I L+ L++N+ + L GN + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLTATIRLSHLRHNYQLLKRLHGN-KMLAVVKADAYGHGAVRCARALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR A I +L G+ E D + Sbjct: 60 LDEGIELRQAGVSAPIVMLEGVFEPAEYAAVDEYRLWPGVQNQWQLESLLAHRWREPVTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G Q + ++H A AD+P + + QL F T Sbjct: 120 WLKMDSGMHRVGFFPQNFAPAHQALRQSPQVAHIVNMTHFARADEPEQAMTTAQLAAFDT 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 ++ G + SLA+S+ I+ P R GI+LYG ++ V+ +RI Sbjct: 180 AVAGLSGAQ-SLANSAAIIAHPAARRDWGRAGIALYGIEPFPGACPELKPVMRLTSRIFA 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R GE V YG R + I +AA GYADGYP T G + G Sbjct: 239 ERTLQPGEPVGYGASFITERSTRIGIAACGYADGYPRTAQN-----------GCPLTVNG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++G+++MDM ++ + G ++++G + + VA ++GT +Y+LL I R Sbjct: 288 QPSRLIGRVSMDMLAVELDHHQGV--GSEVELWGDAVSVATVAQSAGTISYELLCHI-KR 344 Query: 365 YAKFY 369 Y Sbjct: 345 AHYVY 349 >gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM 15606] gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM 15606] Length = 825 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ N + + + + ++K +AYG G +IA L + V V Sbjct: 464 TTLEVNLNAVVKNLNHYRSFMKPQTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVA 523 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + I ++ K +FD +L P + S L K P Sbjct: 524 DEGVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFP 582 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + ++ + SH +D D ++ Q E Sbjct: 583 VHIKLDTGMHRLGFDPHKDIDELIRRLKHQNAIIPRSVFSHFVGSDCDDFDAFSAQQFEL 642 Query: 182 F-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F + + I + +S+GI P+ + R G+ LYG + NK+ + Sbjct: 643 FTFGASKLQSAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINPRNNKTINNIS-- 700 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ + GE + Y + L RDS+I IGYADG LS Sbjct: 701 TLKTTILQLHHLATGESIGYSRKTILERDSVIGAIPIGYADGLDRHLSNRH--------- 751 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +G I MD+ M D+T + GD ++IFG + + ++ GT Y+ Sbjct: 752 -GYCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDCVEIFGDHLPVTVLSDIIGTIPYE 809 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 810 VLTGISNRVKRVY 822 >gi|253575144|ref|ZP_04852483.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845600|gb|EES73609.1| alanine racemase [Paenibacillus sp. oral taxon 786 str. D14] Length = 391 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 106/382 (27%), Positives = 166/382 (43%), Gaps = 28/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ L A+ +N ++ R AVVK N YG G + A A +AG V Sbjct: 15 RETWAEVSLDAIAHNTGLFRKQIAEGCRLMAVVKANGYGHGAVQAAQAAIHAGADCLGVA 74 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 V+E ++LR I VL P G E + + V + + G + Sbjct: 75 LVDEALQLRAAGISQPILVLGYTPPFGVEAAVRQGITLTVDTQEVLQETIACAKKQGCAA 134 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACADDPSSHVNSVQLE 180 L+VDTG +R+GLS A+ + + +H A AD P Q Sbjct: 135 RIHLKVDTGMSRIGLSTTRAVIELAELAAAAAPFVILEGVFTHFADADGPDPAYTLEQFA 194 Query: 181 RFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232 RF+ + G+ +S+ + P H L R GI+LYG +P+ Sbjct: 195 RFQACLDALEAHGLHVPIKHCCNSAATMRFPQMHLDLVRIGIALYGLYPSAQLRLPEYPL 254 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q + + +I +R+ G+ V YG + + LIA IGYADG TLS Sbjct: 255 QQAMQLKTKIASLRRIKPGQTVGYGRTYRAAEERLIATVPIGYADGLSRTLSNR------ 308 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-----PDIKLDDVA 347 G ++G+ VPI+G++ MD TM D+TD S++ G+ + +FG I +D+VA Sbjct: 309 -----GFALVRGHRVPIIGRVCMDQTMLDVTDVESVQAGEEVILFGGTGEAASISIDEVA 363 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ ++G R + Y Sbjct: 364 DWIGTINYEVVCQLGVRVPRVY 385 >gi|167722932|ref|ZP_02406168.1| alanine racemase [Burkholderia pseudomallei DM98] Length = 349 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 156/364 (42%), Gaps = 21/364 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ +N + + NAR +VVK NAYG G E + PAL AG + Sbjct: 3 RPIVARIHPDAVAHNLAIVRQKAPNARIWSVVKANAYGHGIEHVYPAL--AGADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPVLLLEGIFEAADVEIADRHRLTVAVHGDEQFKLLTAAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPHALRAAWERAAAAPSIGRIALMMHFANADEGE---IDWQMSVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + P++ +T + Sbjct: 178 ATQGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGASRHVADVPLRAAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ GE V YG R+ I V A GYADGYP G Sbjct: 237 RIIGVQTLTPGETVGYGRCFAAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+L+ Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGEQVRVDDVAEAAGTIGYELMCA 345 Query: 361 IGTR 364 + R Sbjct: 346 LARR 349 >gi|51473254|ref|YP_067011.1| alanine racemase [Rickettsia typhi str. Wilmington] gi|81826340|sp|Q68XW3|ALR_RICTY RecName: Full=Alanine racemase gi|51459566|gb|AAU03529.1| alanine racemase [Rickettsia typhi str. Wilmington] Length = 402 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 125/406 (30%), Positives = 187/406 (46%), Gaps = 56/406 (13%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+L+A+KNN+ + + A A VK N YG+G +IA AL Q FFV + EEG Sbjct: 6 LEINLSAIKNNYRLLQDICTTALVGAAVKANGYGIGAMQIAKALIEENCQYFFVATSEEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126 + LR I VL G+ + NL PV++++ Q+ + K + P L Sbjct: 66 INLRKALNNDITILVLNGVFTHDALELIQYNLTPVLNNLKQIEIWQKFSNLKEKILPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NR GL+ E ++ K L IISHLA +++ + N QL RF+ + Sbjct: 126 HFNTGLNRFGLNYDEIEQLINDRDLLKGLDLQYIISHLAASEEMDNPYNLAQLNRFKDYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---------------------- 224 ++ ++ASLA+S GI LG +YHF L RPG +LYG Sbjct: 186 EYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSYNLSYKEKFERNTPALA 245 Query: 225 -------------------KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265 + S+ +Q VT +A II ++ + Y RD Sbjct: 246 TTVCINKCADVNTRLTYKVPLKGSYRLQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTKRD 305 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 S+IA +GYADG+ S G+ FI VPI+G+++MD+ D+TD Sbjct: 306 SIIATLPLGYADGFSRNFSNQ-----------GEVFINSRSVPIVGRVSMDLINIDVTDL 354 Query: 326 LSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 EV G ++I G D +A GT Y++L +G+RY + Y Sbjct: 355 PPSEVFLGQEVEIIGNYCTPDKIASIIGTVGYEVLTSLGSRYKRKY 400 >gi|325661284|ref|ZP_08149911.1| alanine racemase [Lachnospiraceae bacterium 4_1_37FAA] gi|331084962|ref|ZP_08334049.1| alanine racemase [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472791|gb|EGC76002.1| alanine racemase [Lachnospiraceae bacterium 4_1_37FAA] gi|330408662|gb|EGG88127.1| alanine racemase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 388 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 163/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + + KIDL A+ N M L AV+K + YG G ++A L + V Sbjct: 1 MKTYSRVYAKIDLDAVAWNMEQMKKNLKEGTEMVAVIKTDGYGHGAVQVASMLESYDYVW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMS 117 + V +++E V LR Q I VL I P Q + + + + + + Sbjct: 61 GYAVATLDEAVVLRAAEIQKPILVLGCIFPDQYWEMLKYEIRMNVYTKEMAEAISALAVE 120 Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +++DTG RLG S + +++ L + +H A AD+ Sbjct: 121 KGEQAYVHIKLDTGMARLGFSAEESSIEEIKEIAELPNLVLEGVFTHFAKADEEDKTFTM 180 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230 +QLE+F + ++S+GI+ + L R GI++YG Sbjct: 181 MQLEKFEWMTQRLEEEGVTFPYVHASNSAGIIDVRRADYNLVRAGIAIYGLYPSEEVDKE 240 Query: 231 --PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ ++ ++ I ++ AG VSYGG IA IGY DGYP +LS Sbjct: 241 KVQLKPALSLKSHIAFVKDIPAGTPVSYGGDFVSEHQMRIATIPIGYGDGYPRSLSDT-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G PI+G+I MD M D++D ++ GD + + G D + ++ Sbjct: 299 ---------GYVLIRGKKAPIIGRICMDQFMVDVSDIPEVKFGDKVTLIGRDQEEYLPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ + +G R + Y Sbjct: 350 KLSELSGRFNYEFVCDLGKRIPRVY 374 >gi|291166386|gb|EFE28432.1| alanine racemase [Filifactor alocis ATCC 35896] Length = 388 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 159/383 (41%), Gaps = 25/383 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M +I+L L+ N+ ++ L + + V+K NAYG G +IA N G+ Sbjct: 1 MRQYGATWAEINLDTLEQNYKNLKQLITHKTKVCCVLKANAYGHGSVEIAKLYENMGIDY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V++++E ++LR + I L + Q + + N+ I ++ Q + + Sbjct: 61 IAVSNMDEALELRNAGIKLPITCLSFVPEYQYEELLKNNIDIPIYTLSQGIALNNIALKH 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G +R+G + A+ I +H A AD+ Sbjct: 121 QKVANVHIKIDSGMSRIGFLCNDMAIRDIKQLSRLDGLHFKGIFTHFARADERDKFHTQK 180 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKS 229 Q F LI + +++ + P YH + R GI+L+G K+ Sbjct: 181 QFYVFSKLIQSLEKQNITFDIRHCCNTAATICYPEYHLDMVRLGIALFGYYPSKEVSEKN 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDS 288 ++ ++ + I ++ G VSYG + + D IA IGYADG+ LS Sbjct: 241 VNIKPAMSLFSTISNLKVVEKGTGVSYGHKYIVQDDYEKIATIPIGYADGFSRALSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDV 346 IKG PI+G + MD +M + S +GD + I+ + ++ + Sbjct: 298 --------NCYVKIKGDKYPIVGNVCMDQSMIRLDISKEFNIGDKVVIYSDEQDMSVERL 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A A GT +Y++L + R + + Sbjct: 350 AKAMGTISYEVLCMMQRRIPRIF 372 >gi|297582852|ref|YP_003698632.1| alanine racemase [Bacillus selenitireducens MLS10] gi|297141309|gb|ADH98066.1| alanine racemase [Bacillus selenitireducens MLS10] Length = 405 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 157/385 (40%), Gaps = 34/385 (8%) Query: 3 SNEFLR---LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 ++ F R +IDL A+ +N ++ +L + AVVK NAYG G +A +AG Sbjct: 19 THPFYRDTWAEIDLNAIHDNVTAIKASLPAHTEMMAVVKANAYGHGAVDVAREALDAGAT 78 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117 V ++E + LR A I VL I I + ++ + L L+ Sbjct: 79 YLGVAILDEAIALRKAGIGAPILVLGYIRAEDILIASELDIAVTVFQKDWLEKAESLLRA 138 Query: 118 CGVSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +++D+G R+G +E + + +H+A AD+P + Sbjct: 139 AGRKAVCHVKLDSGMGRIGLRKEEEIRELAEVLKASLHIHVEGAYTHMAAADEPGNDYYH 198 Query: 177 VQLERFRTLISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----I 226 VQ ERF ++ + A+S+ L L R GIS+YG Sbjct: 199 VQKERFLDMMDWLESSLGEKVKIRHCANSASALRFHEESCNLVRVGISMYGMAPSVEMKP 258 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + P++ ++ ++RI ++ GE +SYG + + I IGYADG+ Sbjct: 259 DMKVPLKQAMSLKSRITQVKLLEPGEGISYGSTYRTSGHEWIGTVPIGYADGWIRAHQS- 317 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 G +KG I+G+I MD M + +E G + + G D + Sbjct: 318 -----------GDVLVKGKRAKIVGRICMDQMMILL--DGPVETGTEVTLIGEDGGSFLS 364 Query: 343 LDDVALASGTTNYDLLVRIGTRYAK 367 +D+VA T +Y++ + R + Sbjct: 365 MDEVAGRIDTISYEIPCTLSYRVPR 389 >gi|300691641|ref|YP_003752636.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum PSI07] gi|299078701|emb|CBJ51360.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum PSI07] Length = 375 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + ++R AVVK NAYG G E+ L F + Sbjct: 3 RPIQAVIHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERAYEGLRQ--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q + +L G P ++ L + QL G Sbjct: 61 LDEAVRLRQLGWQGPVLLLEGFFKPEDLALVEQYRLATTVHCEEQLRMLELARLKG-PVS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + + + ++H + AD P QL F Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL++S+ L P H RPG+ LYG + + + +T + Sbjct: 178 RATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I+ G + YG + ++ + I V A GYADGYP G H Sbjct: 237 SELIAIQDLPPGATIGYGSRFQVEQPMRIGVIACGYADGYPRHAPGWGGNH-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+ VG + ++G + +D+VA A+GT Y+L+ Sbjct: 290 VLVGGVRTRMVGRVSMDMITVDLAGVPDARVGTPVTLWGQGLPIDEVAHAAGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALAPRVP 356 >gi|330684788|gb|EGG96481.1| alanine racemase [Staphylococcus epidermidis VCU121] Length = 382 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 168/382 (43%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R L IDL A+ +N+ + + L N +V+K N YGLG +IA L G Sbjct: 2 SEKFYRSTYLNIDLNAILSNYQTFDKLHANQTVISVIKANGYGLGSVRIAQHLMENGASF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMS 117 F V +++E ++LR++ +A+I +L I P + S + + + Sbjct: 62 FAVATLDEAIELRMHGIKAKILILGVIPPKDINKAIQHRVALTVPSKSWLKESIKNISDE 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + L++DTG RLG+ ++E + + +H ACAD+P + + Sbjct: 122 NEKALWLHLKLDTGMGRLGMKDVEEYKEVVDIISKYDQLVFEGVYTHFACADEPGDSM-A 180 Query: 177 VQLERFRTLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231 Q ++F+ L+ + +S+G LL R GISLYG N Sbjct: 181 TQYQKFKELVEQVEKPTYIHTQNSAGALLMDGQFCNAIRLGISLYGYYPSEYVKENVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + I+ + G+ VSYG T + IAV IGYADGY ++ G Sbjct: 241 LKPSAQLVSEIVQTKTLNVGDSVSYGSTYTATEPTRIAVLPIGYADGYLRSMQGSC---- 296 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 + G+ ++G++ MD TM I D +++VGD + + D ++ +A Sbjct: 297 --------VNVNGHQCEVIGRVCMDQTMVKIPD--TVKVGDKVILLDNHVDTDQSVEALA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 347 KQQDTINYEVLCNLSRRLPRIY 368 >gi|325568405|ref|ZP_08144772.1| alanine racemase [Enterococcus casseliflavus ATCC 12755] gi|325158174|gb|EGC70327.1| alanine racemase [Enterococcus casseliflavus ATCC 12755] Length = 386 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 148/380 (38%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ ID TA+ N + L AVVK N YG G + A A G F V Sbjct: 19 HRPTKVIIDTTAITENIKNEIAHLPSETFLFAVVKANGYGHGAVQTAQAAKEGGAAGFCV 78 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 +++E ++LR + +L ++ ++ + + ++S+ L + Sbjct: 79 ATIDEAIELREAGITDPLLILGVVNVQDIPLLAEYDFSFPVASMDWLVEAGTYLEENPIK 138 Query: 121 -SHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++VDTG R+G + +E L I +H + AD + Q Sbjct: 139 TPLKVHVKVDTGMGRIGFLTPEEVLQAVLWLETHPTFDWEGIFTHFSTADQADTTYWETQ 198 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 +RF+ +++ + + +S+ L + R GI++YG + + ++ Sbjct: 199 HQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALKEPFSLK 258 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ + +I ++ G + YG I IGYADG+ + G Sbjct: 259 PALSLVSELIQVKLLEKGAGIGYGETYITPHQEWIGTVPIGYADGWLRKMQGFSL----- 313 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 ++G I+G++ MD M + + VG + + G + I + DVA Sbjct: 314 -------LVEGEPCEIVGRVCMDQLMIRLPRAF--AVGTTVTLIGENHGKRITMQDVADQ 364 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 365 LETIHYEVACTLSARVPREY 384 >gi|54022846|ref|YP_117088.1| alanine racemase [Nocardia farcinica IFM 10152] gi|54014354|dbj|BAD55724.1| putative alanine racemase [Nocardia farcinica IFM 10152] Length = 381 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 158/377 (41%), Gaps = 25/377 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + +DL A+ +N + +G+A VVK + Y G ++A AG ++ VT+V Sbjct: 11 VEAVVDLDAIAHNVRVLREYAGDAAMMVVVKADGYNHGAVEVARTALAAGARELGVTTVA 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E ++LR A + ++ +S Q + + G + Sbjct: 71 EALRLREAGITAPVLCWLNTLSADYAAAVAADIEIGVSGTEQLRAVATAARATGRTATVT 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERF 182 L+VDTG NR G++ E + + SHLA AD+P Q +RF Sbjct: 131 LKVDTGLNRNGIAADELPTVLDLLGELVEEKTVRLRAMFSHLAHADEPKHPFLDEQRDRF 190 Query: 183 -----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 + LA+S+ + P+ F + RPGI++YG + ++ + Sbjct: 191 TAAAAAATARGLRPELLHLANSAATVTRPDLAFDMVRPGIAVYGLSPVPELGDFGLRPAM 250 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +A++ L+++ GE VSYG Q RD+ +A+ GYADG LSG Sbjct: 251 TFQAQVALVKRVAEGEGVSYGHQWIAPRDTTVALIPAGYADGVFRPLSGRFD-------- 302 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIKL---DDVALASGT 352 ++ G P +G++ MD + D+ D + GD +FG + + A GT Sbjct: 303 ---VWLGGTRRPNVGRVCMDQFVVDLGDDAAGVAAGDTAVLFGGGPGVPGAQEWADLLGT 359 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y+++ R + Y Sbjct: 360 IHYEVVCSPRGRAVRRY 376 >gi|226952672|ref|ZP_03823136.1| alanine racemase 1 [Acinetobacter sp. ATCC 27244] gi|226836578|gb|EEH68961.1| alanine racemase 1 [Acinetobacter sp. ATCC 27244] Length = 356 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 168/364 (46%), Gaps = 23/364 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID TAL+ N + + L+ N++ ++VK NAYG G + AL F V +EE ++ Sbjct: 8 IDSTALQYNLNRVKQLAPNSKIVSMVKANAYGHGIKDCLTALAA--TDAFGVACLEEALE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQ 127 +R I ++ G+ E I + L V+ Q+ + K + ++ Sbjct: 66 IRRLGYLQPITLIEGVFSADEMIHVIEQKLECVVHHAQQVEWLLAHKDQYQALDLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E + + + A D +N Q +F + Sbjct: 126 LNSGMNRLGFKVSEITTVIQRLKAEGFNCVLTMHFANADTD---HPLNEQQKMQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIIL 244 + I AS +S+ I P HF RPGI LYG + +K+ ++ V+T A II Sbjct: 183 ACEPILASCCNSAAIYRYPELHFDFVRPGIMLYGASPFADKNVEALDLKPVMTFSAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + + GE V YG T+D IA+ +IGY DGYP I Sbjct: 243 LNQIQQGEYVGYGSTYVATQDMTIAIVSIGYGDGYPRAY-----------IKPNFVAIYD 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++P++G+++MDM DI++ + ++G ++++G +DDVA A+GT Y+LL R+ R Sbjct: 292 QLIPVIGRVSMDMIAIDISNL-NAKIGTKVELWGNTRLVDDVAEANGTIGYELLCRLSQR 350 Query: 365 YAKF 368 + Sbjct: 351 PQRR 354 >gi|311279308|ref|YP_003941539.1| alanine racemase [Enterobacter cloacae SCF1] gi|308748503|gb|ADO48255.1| alanine racemase [Enterobacter cloacae SCF1] Length = 356 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + +DL AL++N + + +R +VVK NAYG G ++I AL F + Sbjct: 2 SRPVVASLDLQALRHNLSVVRRAAPGSRVWSVVKANAYGHGIDRIWSALKE--TDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + + +L G ++ +FD + + Sbjct: 60 NLEEAILLRERGWKGPVLMLEGFFQAEDLALFDKYRLTTTVHSNWQIKALQNARLHAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + Q ++SH A A+ + Sbjct: 120 VYVKVNSGMNRLGFTPQRLHTAWQQLRALPNVGDMTLMSHFADAE---KPDGIREAMVQI 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + G SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLGCPRSLSNSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANSGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I+ G+ V YG + T++ I + A GYADGYP Sbjct: 237 SEIIGIQNLKPGDTVGYGRLYRATQEQRIGIVACGYADGYPRIA-----------PDNTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G+++MDM D+T +G ++++G +IK+DDVA GT Y+L+ Sbjct: 286 VLVDGVRTGTVGRVSMDMLAVDLTPCPQAGIGTPVELWGNEIKIDDVASCCGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|329850902|ref|ZP_08265747.1| alanine racemase [Asticcacaulis biprosthecum C19] gi|328841217|gb|EGF90788.1| alanine racemase [Asticcacaulis biprosthecum C19] Length = 350 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 185/371 (49%), Gaps = 22/371 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ RL +DL AL N+ S+ +G A A VVK +AYGLG +A L G + F Sbjct: 1 MSASSTARLNVDLAALSQNYASLKRAAGAAEVAPVVKADAYGLGMAGVAAHLARQGAKTF 60 Query: 61 FVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 FV + EG+ LR I+VL G+ L PVI++ Q + + Sbjct: 61 FVARLAEGLALRTLVGNDPVIYVLDGLT--DPSAFAAQRLRPVINTPDQYQLW---LQGP 115 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 AL +DTG NRLG+ + D + L+L++SHLAC D+P +N QL Sbjct: 116 SEVVAALHIDTGMNRLGVRPDQIADL----PAARHHGLALVMSHLACGDEPGHPMNYQQL 171 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 FR H+ G+ SL++SSG+ LGP+Y F L RPGI LYGG +Q V Sbjct: 172 MAFRAATDHFPGVARSLSNSSGLYLGPDYGFDLVRPGICLYGGGPFGTAHADIQPVAHLS 231 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ARI+ IR+ GE V YG RD +A +GYADG +L G Sbjct: 232 ARILQIRELKVGESVGYGASFVADRDMTLATIGLGYADGLMRSL-----------APLGF 280 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G P+ G+++MD+ D+T + +++I G LD VA A+GT Y++L Sbjct: 281 VTVQGERRPLTGRVSMDVFTVDVTGLH-VSDRTWVEILGSSQNLDAVATAAGTIGYEVLT 339 Query: 360 RIGTRYAKFYT 370 R+GTR + YT Sbjct: 340 RLGTRVPRHYT 350 >gi|324990138|gb|EGC22076.1| alanine racemase [Streptococcus sanguinis SK353] Length = 369 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLDPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + S + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|308234426|ref|ZP_07665163.1| alanine racemase [Atopobium vaginae DSM 15829] gi|328944273|ref|ZP_08241737.1| alanine racemase [Atopobium vaginae DSM 15829] gi|327491192|gb|EGF22967.1| alanine racemase [Atopobium vaginae DSM 15829] Length = 385 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 100/389 (25%), Positives = 162/389 (41%), Gaps = 33/389 (8%) Query: 3 SNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 N + ++I+L+AL+ N + L + + R VVK +AYG G A A+ +AG F Sbjct: 7 KNRWSWVEINLSALRRNVRTFKKLLNPSVRLVCVVKADAYGHGAAACARAMSSAGANQFA 66 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGV 120 V +V+EG+ LR I +L + + +LIP I + L + + ++ Sbjct: 67 VATVDEGIALRKSGITQPIVLLSEPPETAIDDLIEYSLIPTIYTTEFVLAYGERCVAHNT 126 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 Y + +DTG R+G++ +A++F H + +H A AD Q + Sbjct: 127 VGKYHMALDTGMTRVGVAASDAVEFRHTIDFHRGISCIGTSTHFATADIEGDWDFRRQYQ 186 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233 F I S++ +L P F + R GI LYG + Sbjct: 187 VFSDAIRELHAAGFYTGLIHCNSTAATILHPELQFDMCRVGIGLYGLHPSEATVSRLELS 246 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSP 292 V++ +AR++ + G+ VSYG +++ IA +GYADG +LS Sbjct: 247 PVMSVKARVVRAVEPRIGDGVSYGMTYRVSDPHLQIATIPLGYADGLSRSLSNKMD---- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDIT--------DSLSIEVGDYIQIFGPD---- 340 +KG V +G+I MD MF IE GD + + G D Sbjct: 303 -------VLVKGQRVHQVGRICMDQCMFAYPLQTLAHPQGFAPIERGDVVTVLGEDGAEY 355 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I D++A T NY++L R + Y Sbjct: 356 ISADELAALRNTINYEVLCDFSLRLERIY 384 >gi|212710753|ref|ZP_03318881.1| hypothetical protein PROVALCAL_01821 [Providencia alcalifaciens DSM 30120] gi|212686450|gb|EEB45978.1| hypothetical protein PROVALCAL_01821 [Providencia alcalifaciens DSM 30120] Length = 354 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 154/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R I L++N + G A+ +V+K + YG G ++I L + F V Sbjct: 3 RPIRAIIHPHNLEHNLAVIRQKIGQAKIWSVMKADGYGHGIKRIWRGLKAS--DGFAVLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR Q I +L G + ++ D + + + Sbjct: 61 LHEAVLLREEGWQGPILLLEGFFQAADLVVIDQYQLTTSVHSRWQLAAIEQATLSQPISV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++++G NRLG S+ E D + ++SH A +D P Q+ + Sbjct: 121 YIKLNSGMNRLGFSVSEYSDIVDQLTHMANVANVTLMSHFANSDLPGGT----QVPLEKI 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + +A+S +L N H+ R GI LYG + + ++ +T ++ Sbjct: 177 QHFSSLSLPTCIANSGAVLWHQNTHYDWVRAGIVLYGASPSGKWADIAEYHLKAAMTLQS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I AG+ + YG + + IA A GYADGYP G Sbjct: 237 EIIAIHHIEAGQSIGYGSKFTSEKPMRIATVACGYADGYPRHA-----------PTGTPV 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + +G +LG ++MDM DI+D + +G ++++G ++ +DDVA +GT Y+LL Sbjct: 286 WCQGRRCELLGAVSMDMLTIDISDCPEVTIGTPVELWGENLPVDDVAQFAGTIGYELLCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|239999360|ref|ZP_04719284.1| Alr [Neisseria gonorrhoeae 35/02] gi|317164616|gb|ADV08157.1| hypothetical protein NGTW08_1189 [Neisseria gonorrhoeae TCDC-NG08107] Length = 352 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGNDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+I+MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRISMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|225010284|ref|ZP_03700756.1| alanine racemase [Flavobacteria bacterium MS024-3C] gi|225005763|gb|EEG43713.1| alanine racemase [Flavobacteria bacterium MS024-3C] Length = 363 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 159/367 (43%), Gaps = 19/367 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL AL +N+ M +S VVK N YG IA L + GV V E Sbjct: 6 LEIDLAALAHNYRYMRSKISAETMLLGVVKANGYGSESIAIAQKLTDLGVNYLGVAYTHE 65 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 GV LRL + I VL+ P + I + L P I S+ L + ++ +P L+ Sbjct: 66 GVALRLAGIKTPILVLHP-QPEEFHDIVNHCLEPSIYSIRTLEAFIQVAPLNSHYPIHLK 124 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLI 186 ++TG NRLGLS + ++ ++SHLA DD +Q++RF+ + Sbjct: 125 LNTGLNRLGLSTGTLERVCKTLLCQSNVKVKAVLSHLAATDDLKERAFTELQIQRFKDGV 184 Query: 187 SHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + L +SSGI+ P F + R GI+LYG + ++ V T + Sbjct: 185 AFIEKHIGPVAIKHLINSSGIINFPEAAFNMVRSGIALYGYGNNPKIDALLKPVATLTTK 244 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I I G+ V Y + +A IG+ADG G F Sbjct: 245 ISQIHSIEKGDWVGYNKGFVANKKMRVATLTIGHADGISRVYG----------QGKGVVF 294 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G PI+G + MDM M D+ + + GD + IFG + A + T +Y+LL I Sbjct: 295 VGGKPCPIIGNVCMDMLMIDLENQI-ANEGDSVVIFGKGASAETFAGGAKTISYELLTGI 353 Query: 362 GTRYAKF 368 G R + Sbjct: 354 GARVKRV 360 >gi|308389771|gb|ADO32091.1| alanine racemase [Neisseria meningitidis alpha710] gi|325131163|gb|EGC53883.1| alanine racemase [Neisseria meningitidis OX99.30304] gi|325136699|gb|EGC59299.1| alanine racemase [Neisseria meningitidis M0579] gi|325201690|gb|ADY97144.1| alanine racemase [Neisseria meningitidis M01-240149] gi|325208574|gb|ADZ04026.1| alanine racemase [Neisseria meningitidis NZ-05/33] Length = 352 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGITEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|325128679|gb|EGC51545.1| alanine racemase [Neisseria meningitidis N1568] Length = 352 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLVRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|325204612|gb|ADZ00066.1| alanine racemase [Neisseria meningitidis M01-240355] Length = 352 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWSAVGNQWQLEALLARHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011] gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011] Length = 833 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 152/370 (41%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++DL AL +N + L + ++K AYG G ++A L + V V +E Sbjct: 475 LEVDLNALIDNLNYYRDQLQPKTKIMCMIKAAAYGAGSYEVAKTLQDRKVDYLGVAVADE 534 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR + I ++ K +F +L P + S L + P Sbjct: 535 GAELRKVGITSSIIIMNPEVSA-FKQMFQYSLEPEVYSFHLLDSLLNAAEKEGITNFPIH 593 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + + + N+ I SHL +D D Q+ F Sbjct: 594 IKIDTGMHRLGFMADDMPELVNRLKNQNALIPKSIFSHLVGSDSDVFDDFTKDQISLFDK 653 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +S+GI P H+ + R GI LYG T + Sbjct: 654 AATELQAAFSHKIIRHICNSAGIERFPEAHYDMVRLGIGLYGVHPSNKPILKNVN--TLK 711 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I+ E V Y + LTR+S IA IGYADG L G Sbjct: 712 TTILQIKDLDKIETVGYSRKGVLTRNSRIAAIPIGYADGLNRKLGN----------HNGF 761 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD++M D+TD + GD + I+G D+ + +A GT Y++L Sbjct: 762 CLVNGQKASYIGNICMDVSMIDVTDIP-CKEGDEVIIYGNDLPAEVLAEKLGTIPYEILA 820 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 821 NISTRVKRVY 830 >gi|111220586|ref|YP_711380.1| alanine racemase [Frankia alni ACN14a] gi|111148118|emb|CAJ59786.1| Alanine racemase [Frankia alni ACN14a] Length = 387 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 96/384 (25%), Positives = 157/384 (40%), Gaps = 29/384 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S ++L A++++ ++ A +G+A T AVVK + YG G A A +AG Sbjct: 15 SEPRTYAAVELDAVRDSVAALAARAGDAATMAVVKADGYGHGMIPCARAALDAGASWLGT 74 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVS 121 +EE + LR A + + + S S + G Sbjct: 75 AVLEEALALRAAGITAPVLCWLATPGERFGEAISAGIDVSASASWTLTEIAAAARLAGRP 134 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQ 178 L+ DTG R G + + + + + SH A AD P Q Sbjct: 135 ARVHLKADTGLGRAGAMPGDWPGLCDQAAALQAEGVIEAFGVWSHFAFADAPGHATVQAQ 194 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 + FR + + LA+S+ L+ P HF L RPG+S+YG + P + Sbjct: 195 IGAFRDAVDIAEKAGLAPTVRHLANSAATLVSPEAHFDLVRPGVSVYGLSPGPEVGPPAR 254 Query: 234 T----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + L+++ AG VSY + R++ +A+ +GYADG P + Sbjct: 255 FGLRPAMSLVSHAALVKRVPAGTGVSYAHRYTTARETTLALVPLGYADGIPRAATNT--- 311 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G+ G I G + MD + D+ D + GD +++FGP + DD Sbjct: 312 --------GEVLFGGRRRRIAGTVCMDQFVLDVGDD-EVAAGDEVRLFGPGDLGEPTADD 362 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A+A GT NY+++ RIG R + Y Sbjct: 363 WAVALGTINYEIVTRIGQRVPRVY 386 >gi|254805407|ref|YP_003083628.1| Alanine racemase [Neisseria meningitidis alpha14] gi|254668949|emb|CBA07214.1| Alanine racemase [Neisseria meningitidis alpha14] Length = 352 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLVRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRHA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|253733096|ref|ZP_04867261.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH130] gi|253728929|gb|EES97658.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH130] Length = 390 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 21 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 80 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 81 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 140 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q +RF+ +++ Sbjct: 141 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 199 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 200 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 259 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 260 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 307 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + +D VA T NY++L Sbjct: 308 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVDVVAEKQHTINYEVL 365 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 366 CNLSRRLPRIY 376 >gi|68536824|ref|YP_251529.1| hypothetical protein jk1734 [Corynebacterium jeikeium K411] gi|260579183|ref|ZP_05847073.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734] gi|68264423|emb|CAI37911.1| alr [Corynebacterium jeikeium K411] gi|258602669|gb|EEW15956.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734] Length = 572 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 170/401 (42%), Gaps = 44/401 (10%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M L +DL A+ +N + A AVVK +AY G + +APA+ +AGV+ Sbjct: 3 MSDRHLAELVVDLDAIAHNVRVFREAAAPAGVLAVVKADAYNHGVDVVAPAMLDAGVEQL 62 Query: 61 FVTSVEEGVKLR-------LYTPQARIFVLYGIHPGQEKIIFDTNLI-------PVISSV 106 V ++ E + LR A I +F ++ S V Sbjct: 63 GVATLGEALHLREILAGLGESYASAPITAWMWTPGEDLAEVFAADINVGVPSLAHARSLV 122 Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLA 165 Q + L VDTG +R G+S E + +K L +++ +++H+A Sbjct: 123 DQAEKTQREAQVSAPVRVTLMVDTGLSRSGVSPAEWRETVELLASKTELVEVTAVMTHMA 182 Query: 166 CADDPSSHVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLY 220 ADDP S N++Q RF I + +A++ L P+ +QL RPG+ LY Sbjct: 183 SADDPKSEANNLQAARFAEAIEFCRSRGLRVPCNHIANTPATLHRPDLAYQLVRPGVGLY 242 Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280 G I ++ +T AR+ R GE VSY + RD+ AV A+GYADG P Sbjct: 243 GIDP-IGVDVELRAAMTLRARVTTTRVVPKGEGVSYSHTWRAQRDTRTAVVALGYADGLP 301 Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL----------SIEV 330 ++SG + I G P +G++ MD + ++ + ++ Sbjct: 302 RSVSG-----------KMQVTINGKTYPQIGRVCMDQIVVELGPADGAEGSTNGAADVKP 350 Query: 331 GDYIQIFGP-DIKLDDVALASGTTNYDLLVRI-GTRYAKFY 369 GD+ IFG D+ A +GT +Y++L G R + + Sbjct: 351 GDWAVIFGEGGNSADEFAELAGTISYEVLTMPRGPRVKRVF 391 >gi|161521048|ref|YP_001584475.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|189352774|ref|YP_001948401.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|160345098|gb|ABX18183.1| alanine racemase [Burkholderia multivorans ATCC 17616] gi|189336796|dbj|BAG45865.1| alanine racemase [Burkholderia multivorans ATCC 17616] Length = 373 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AVVK NAYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + + + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELVERHQLTVAVHCDEQLDLLIAAKPQQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ QL +F Sbjct: 121 QLKMNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANADEGE---IDWQLAQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E +L++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGIPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ AGE V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAAGETVGYGRRFTAERPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVLTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDRVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|332652709|ref|ZP_08418454.1| alanine racemase [Ruminococcaceae bacterium D16] gi|332517855|gb|EGJ47458.1| alanine racemase [Ruminococcaceae bacterium D16] Length = 373 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 109/378 (28%), Positives = 164/378 (43%), Gaps = 30/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++DL AL +N + AL+ R +VVK +AYG G +A L GV+ F V Sbjct: 6 SRAWREVDLNALAHNARVLQGALAPGCRLMSVVKADAYGHGSIPVARRLEAEGVKAFAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EEG+ LR Q +I +L PG I L+ ++ + + GV Sbjct: 66 CLEEGIALRRSGIQGKILILGYTSPGMAFQICRWKLVQTVADEGHGRALA---AQGVPLS 122 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQLE 180 L +DTG +RLG+ +++ + + SHL +D + QLE Sbjct: 123 VHLALDTGMHRLGIPVEDHE-AISRLYKLPNLNIQGTFSHLCVSDSLEAKDVSFTHTQLE 181 Query: 181 RF-----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG---GTDKINKSHPM 232 +F E + +S GI P R GI+LYG + + Sbjct: 182 QFYGAVRWLKTHGMNPGEIHIQASYGIWNLPPQPCFWARAGIALYGIFSNDAHTERKLDL 241 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V++ AR+ L+R L GE YG + + +AV IGYADG P +LS Sbjct: 242 HPVLSLRARVALVRTMLPGEGAGYGLAFRTDQMRRLAVVTIGYADGLPRSLS-------- 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 GG+ + G P++G++ MD M D+TD ++ GD I G D I+ +DVA Sbjct: 294 --QQGGEVLLHGTRCPMVGRMCMDQLMVDVTDVPCVKPGDVATIIGTDGGEVIRAEDVAG 351 Query: 349 ASGTTNYDLLVRIGTRYA 366 GT +LL R+G R Sbjct: 352 QCGTITNELLSRLGQRLP 369 >gi|308198664|pdb|3OO2|A Chain A, 2.37 Angstrom Resolution Crystal Structure Of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col gi|308198665|pdb|3OO2|B Chain B, 2.37 Angstrom Resolution Crystal Structure Of An Alanine Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus Col Length = 385 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 16 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 75 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 76 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q +RF+ +++ Sbjct: 136 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 194 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 195 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 254 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 255 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 302 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 303 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 360 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 361 CNLSRRLPRIY 371 >gi|207723325|ref|YP_002253724.1| alanine racemase protein [Ralstonia solanacearum MolK2] gi|206588523|emb|CAQ35486.1| alanine racemase protein [Ralstonia solanacearum MolK2] Length = 375 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 156/367 (42%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + ++R AVVK NAYG G E++ L F + Sbjct: 3 RPIQAVIHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q + +L G P ++ L + QL G Sbjct: 61 LDEAVRLRQLGWQGPVLLLEGFFKPEDLALVEQYRLTTTVHCEEQLRMLELARLKG-PVS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + + + ++H + AD P QL F Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL++S+ L P H RPG+ LYG + + + + +T + Sbjct: 178 QATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGMAADIEGTGLMSAMTLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I+ G + YG + ++ + I + A GYADGYP G H Sbjct: 237 SELIAIQDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGGNH-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+ + VG + ++G + +D+VA A+GT Y+L+ Sbjct: 290 VLVDGVRTRMVGRVSMDMITVDLAEVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALALRVP 356 >gi|327187996|gb|EGE55226.1| putative alanine racemase [Rhizobium etli CNPAF512] Length = 386 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 185/365 (50%), Positives = 246/365 (67%), Gaps = 2/365 (0%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DLTAL NW M SG AR AAVVK +AYG+G E ALY AG +DFFV +V+ Sbjct: 18 LRLTVDLTALTENWRDMARRSGAARAAAVVKADAYGMGIEDAGEALYTAGARDFFVATVD 77 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV LRLY P+ARIFVL GI PG E+ FD +L+PVISS QL F+ +++ +P AL Sbjct: 78 EGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVISSEEQLAFWMAVLADYGDYPCAL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTGFNRLGL + +A+ + L++SHLAC DDPS +N QLE FR + Sbjct: 138 HVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACGDDPSHAMNRQQLESFRRVT 197 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + Y+G+++SLA+S+GI LG +YHF+LTRPGI+LYGG ++PM+ V TAEARII +R Sbjct: 198 AAYEGVDSSLAASAGIFLGEDYHFELTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 257 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE VSYG +L RDS +A+ + GYADGY + S V GG+GFI G+ Sbjct: 258 TVKAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQVVPQGGQGFIAGHK 317 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+ITMD+T+FD+TD + GDY+++FG ++ LDDVA A+GT Y++L +G R Sbjct: 318 VPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNVALDDVARAAGTIGYEILTSMGLR 377 Query: 365 YAKFY 369 + + Y Sbjct: 378 HERRY 382 >gi|57650742|ref|YP_186876.1| alanine racemase [Staphylococcus aureus subsp. aureus COL] gi|87161019|ref|YP_494673.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195971|ref|YP_500784.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222187|ref|YP_001333009.1| alanine racemase [Staphylococcus aureus subsp. aureus str. Newman] gi|161510282|ref|YP_001575941.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141592|ref|ZP_03566085.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258453219|ref|ZP_05701210.1| alanine racemase [Staphylococcus aureus A5948] gi|262049241|ref|ZP_06022116.1| alanine racemase [Staphylococcus aureus D30] gi|262052487|ref|ZP_06024685.1| alanine racemase [Staphylococcus aureus 930918-3] gi|282923060|ref|ZP_06330745.1| alanine racemase [Staphylococcus aureus A9765] gi|284025106|ref|ZP_06379504.1| alanine racemase [Staphylococcus aureus subsp. aureus 132] gi|294850555|ref|ZP_06791282.1| alanine racemase [Staphylococcus aureus A9754] gi|6647411|sp|Q9ZAH5|ALR1_STAA8 RecName: Full=Alanine racemase 1 gi|81694088|sp|Q5HED1|ALR1_STAAC RecName: Full=Alanine racemase 1 gi|123484988|sp|Q2FF55|ALR_STAA3 RecName: Full=Alanine racemase gi|172048975|sp|A6QIR5|ALR_STAAE RecName: Full=Alanine racemase gi|3850851|emb|CAA76221.1| alr protein [Staphylococcus aureus] gi|57284928|gb|AAW37022.1| alanine racemase [Staphylococcus aureus subsp. aureus COL] gi|87126993|gb|ABD21507.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203529|gb|ABD31339.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374987|dbj|BAF68247.1| alanine racemase [Staphylococcus aureus subsp. aureus str. Newman] gi|160369091|gb|ABX30062.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859165|gb|EEV82022.1| alanine racemase [Staphylococcus aureus A5948] gi|259159608|gb|EEW44654.1| alanine racemase [Staphylococcus aureus 930918-3] gi|259162606|gb|EEW47173.1| alanine racemase [Staphylococcus aureus D30] gi|269941671|emb|CBI50078.1| alanine racemase [Staphylococcus aureus subsp. aureus TW20] gi|282593251|gb|EFB98248.1| alanine racemase [Staphylococcus aureus A9765] gi|294822575|gb|EFG39017.1| alanine racemase [Staphylococcus aureus A9754] gi|315196997|gb|EFU27339.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS01] gi|329314756|gb|AEB89169.1| Alanine racemase 1 [Staphylococcus aureus subsp. aureus T0131] gi|329724022|gb|EGG60546.1| alanine racemase [Staphylococcus aureus subsp. aureus 21189] gi|329729286|gb|EGG65694.1| alanine racemase [Staphylococcus aureus subsp. aureus 21193] Length = 382 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q +RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|15925060|ref|NP_372594.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu50] gi|15927645|ref|NP_375178.1| alanine racemase [Staphylococcus aureus subsp. aureus N315] gi|21283723|ref|NP_646811.1| alanine racemase [Staphylococcus aureus subsp. aureus MW2] gi|49486864|ref|YP_044085.1| alanine racemase [Staphylococcus aureus subsp. aureus MSSA476] gi|148268522|ref|YP_001247465.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9] gi|150394586|ref|YP_001317261.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1] gi|156980386|ref|YP_001442645.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu3] gi|253315700|ref|ZP_04838913.1| alanine racemase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006859|ref|ZP_05145460.2| alanine racemase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794520|ref|ZP_05643499.1| alanine racemase [Staphylococcus aureus A9781] gi|258411250|ref|ZP_05681528.1| alanine racemase [Staphylococcus aureus A9763] gi|258419766|ref|ZP_05682732.1| alanine racemase [Staphylococcus aureus A9719] gi|258438073|ref|ZP_05689452.1| alanine racemase 1 [Staphylococcus aureus A9299] gi|258441321|ref|ZP_05690806.1| alanine racemase 1 [Staphylococcus aureus A8115] gi|258446985|ref|ZP_05695137.1| alanine racemase [Staphylococcus aureus A6300] gi|258449782|ref|ZP_05697882.1| alanine racemase [Staphylococcus aureus A6224] gi|258453480|ref|ZP_05701459.1| alanine racemase 1 [Staphylococcus aureus A5937] gi|269203705|ref|YP_003282974.1| alanine racemase [Staphylococcus aureus subsp. aureus ED98] gi|282895219|ref|ZP_06303435.1| alanine racemase [Staphylococcus aureus A8117] gi|282929298|ref|ZP_06336869.1| alanine racemase [Staphylococcus aureus A10102] gi|295407616|ref|ZP_06817407.1| alanine racemase [Staphylococcus aureus A8819] gi|296275701|ref|ZP_06858208.1| alanine racemase [Staphylococcus aureus subsp. aureus MR1] gi|297246613|ref|ZP_06930444.1| alanine racemase [Staphylococcus aureus A8796] gi|54036714|sp|P63480|ALR1_STAAN RecName: Full=Alanine racemase 1 gi|54036715|sp|P63481|ALR1_STAAW RecName: Full=Alanine racemase 1 gi|54040680|sp|P63479|ALR1_STAAM RecName: Full=Alanine racemase 1 gi|60389600|sp|Q6G7N9|ALR1_STAAS RecName: Full=Alanine racemase 1 gi|13701865|dbj|BAB43157.1| alanine racemase [Staphylococcus aureus subsp. aureus N315] gi|14247843|dbj|BAB58232.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu50] gi|21205165|dbj|BAB95859.1| alanine racemase [Staphylococcus aureus subsp. aureus MW2] gi|49245307|emb|CAG43782.1| alanine racemase [Staphylococcus aureus subsp. aureus MSSA476] gi|147741591|gb|ABQ49889.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9] gi|149947038|gb|ABR52974.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1] gi|156722521|dbj|BAF78938.1| alanine racemase [Staphylococcus aureus subsp. aureus Mu3] gi|257788492|gb|EEV26832.1| alanine racemase [Staphylococcus aureus A9781] gi|257840005|gb|EEV64471.1| alanine racemase [Staphylococcus aureus A9763] gi|257844248|gb|EEV68631.1| alanine racemase [Staphylococcus aureus A9719] gi|257848490|gb|EEV72480.1| alanine racemase 1 [Staphylococcus aureus A9299] gi|257852365|gb|EEV76290.1| alanine racemase 1 [Staphylococcus aureus A8115] gi|257854218|gb|EEV77169.1| alanine racemase [Staphylococcus aureus A6300] gi|257856956|gb|EEV79857.1| alanine racemase [Staphylococcus aureus A6224] gi|257864352|gb|EEV87101.1| alanine racemase 1 [Staphylococcus aureus A5937] gi|262075995|gb|ACY11968.1| alanine racemase [Staphylococcus aureus subsp. aureus ED98] gi|282589108|gb|EFB94207.1| alanine racemase [Staphylococcus aureus A10102] gi|282762409|gb|EFC02553.1| alanine racemase [Staphylococcus aureus A8117] gi|285817735|gb|ADC38222.1| Alanine racemase [Staphylococcus aureus 04-02981] gi|294967514|gb|EFG43552.1| alanine racemase [Staphylococcus aureus A8819] gi|297176513|gb|EFH35779.1| alanine racemase [Staphylococcus aureus A8796] gi|312830422|emb|CBX35264.1| alanine racemase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128410|gb|EFT84419.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS03] gi|329727774|gb|EGG64226.1| alanine racemase [Staphylococcus aureus subsp. aureus 21172] Length = 382 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 155/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + +H ACAD+ + + Q +RF+ +++ Sbjct: 133 DTGMGRLGIKDTNTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|327458867|gb|EGF05215.1| alanine racemase [Streptococcus sanguinis SK1057] Length = 369 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRSSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSKHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALAAEKDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLKLPYEFEPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSESQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|121635291|ref|YP_975536.1| alanine racemase [Neisseria meningitidis FAM18] gi|166969422|sp|A1KV59|ALR_NEIMF RecName: Full=Alanine racemase gi|120866997|emb|CAM10760.1| alanine racemase [Neisseria meningitidis FAM18] gi|254669582|emb|CBA03582.1| Alanine racemase [Neisseria meningitidis alpha153] gi|254672097|emb|CBA04784.1| Alanine racemase [Neisseria meningitidis alpha275] gi|325133023|gb|EGC55697.1| alanine racemase [Neisseria meningitidis M6190] gi|325138687|gb|EGC61240.1| alanine racemase [Neisseria meningitidis ES14902] gi|325142822|gb|EGC65192.1| alanine racemase [Neisseria meningitidis 961-5945] gi|325198750|gb|ADY94206.1| alanine racemase [Neisseria meningitidis G2136] Length = 352 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLIRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|254832148|ref|ZP_05236803.1| hypothetical protein Lmon1_12409 [Listeria monocytogenes 10403S] gi|3414683|gb|AAC31362.1| alanine racemase [Listeria monocytogenes] Length = 368 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + + AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPESVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA S N QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G++ MD T+ + + G + I G D + DD A Sbjct: 294 ---HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTVTADDAAQYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|167565411|ref|ZP_02358327.1| alanine racemase [Burkholderia oklahomensis EO147] Length = 374 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 158/366 (43%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ N + + +R +VVK NAYG G E+I PAL + + Sbjct: 3 RPIVARIHPDAVARNLAIVRQKAPRSRIWSVVKANAYGHGIERIYPALAD--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R I +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPILLLEGIFEAADVEIADRHRLTVAVHGDEQLTLLTSAKTARPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPGAFRAAWERAAAAPSIGDIALVMHFANADEGE---IDWQMRAFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E +L++S+ +L P H RPG LYG + H P+Q +T + Sbjct: 178 VTDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHLADVPLQPAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ AGE V YG + R+ I V A GYADGYP G Sbjct: 237 KIIGVQTLAAGETVGYGRRFTAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+LL Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGAQVRVDDVAEAAGTIGYELLCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|330470100|ref|YP_004407843.1| alanine racemase [Verrucosispora maris AB-18-032] gi|328813071|gb|AEB47243.1| alanine racemase [Verrucosispora maris AB-18-032] Length = 372 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 101/377 (26%), Positives = 165/377 (43%), Gaps = 27/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A++ N M A + +A AVVK + YG G A A +AG V +++ Sbjct: 4 AEVRVDLDAIRENVDRMRAGT-SAELMAVVKADGYGHGMVPAARAALDAGATWLGVCTLD 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR A + ++ ++S+PQ Sbjct: 63 EALALRAAGIDAPVLAWLLAPGLPLHTGVAADVDLGVASLPQLDEAVEASRRAQRPARVH 122 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG +R G ++ + + + L ++ + SH AD P QL F Sbjct: 123 LKIDTGLSRNGATVADWPALLDAAAKAQADGLVEVVGVWSHFVYADMPGHPTTDRQLAVF 182 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + + LA+S+ L P+ HF L RPG+++YG + ++H ++ +T Sbjct: 183 HEGLAMVERAGLRPRYRHLANSAATLTRPDTHFDLVRPGLAVYGLSPVAGETHGLRPAMT 242 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A AR++L ++ AG VSYG RD+ +AV +GYADG P S Sbjct: 243 ARARVMLTKRVPAGTGVSYGHTYTTERDANLAVVPLGYADGVPRHASNT----------- 291 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 G + G I G++ MD + D D + GD +FG + DD A A GT Sbjct: 292 GPVQLGGRRRTISGRVCMDQFVLDCGDDP-VAAGDVATLFGSGADGEPTADDWAEAVGTI 350 Query: 354 NYDLLVRIG-TRYAKFY 369 NY+++ R G +R + Y Sbjct: 351 NYEIVTRFGSSRVPRVY 367 >gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC BAA-286] Length = 823 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 157/369 (42%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL A+ +N+ L+ + +VK + YG G ++A L V EE Sbjct: 465 LDVDLDAIVHNFKFYRSKLNPKTKMICMVKADGYGTGSSEVAKTLQYHKCDYLAVAVAEE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYAL 126 GV LR + I VL G E++ + V + F + G++ +P + Sbjct: 525 GVILRKQGIKVPIIVLNSEVGGFEELATYSLEPEVYNFRILDAFIKEAKLQGITNYPIHI 584 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG + ++ + + ++ + SHLA ++ Q++ F+ + Sbjct: 585 KIDTGMHRLGFTEEDIPELMDRVKGQTGVRIQSVFSHLAASESWNFDDFTLQQIKTFKKI 644 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + + +S+GI P + R GISLYG + T + Sbjct: 645 AGEVEDSCHYPVMKHILNSAGIERFPEEQLDMVRLGISLYGVSASGLNGLRNVC--TLKT 702 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ AGE V YG + D+ IA IGYADG G Sbjct: 703 TILQIKHIKAGETVGYGRKGHFDHDATIATIRIGYADGISRQFGNGV----------GVV 752 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + GY V I+G I MD+TM D+T ++ GD + IFG ++ + D+A T Y++ Sbjct: 753 LVNGYQVSIVGNICMDLTMIDVTGI-EVKEGDIVTIFGENLPVTDLAKKINTIPYEIFTS 811 Query: 361 IGTRYAKFY 369 I R Y Sbjct: 812 ISNRVKHIY 820 >gi|256831867|ref|YP_003160594.1| alanine racemase [Jonesia denitrificans DSM 20603] gi|256685398|gb|ACV08291.1| alanine racemase [Jonesia denitrificans DSM 20603] Length = 410 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 152/383 (39%), Gaps = 28/383 (7%) Query: 8 RLKIDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R IDL A+ N ++ G +A AVVK NAYG G A A + G V Sbjct: 15 RAIIDLAAISQNVSTLATRLGDNGSHAAIMAVVKANAYGHGLVPAARAALHGGATWLGVA 74 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 E + LR RI + + ++ +++ S + G Sbjct: 75 HAHEALALRQAGITDRILTWLHAPGVPYRDLIAADIDVSVAAPWAAQEVISAAQAAGRPA 134 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNSVQL 179 L+VDTG R G++ + + + + SHLA AD+P Q Sbjct: 135 RVHLKVDTGLGRNGVTPADLPFLLATLIDAQHAGHLTLVGVWSHLAFADEPHHPSVREQA 194 Query: 180 ERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSH 230 F I+ + A L +S+ L P + L RPG+++YG + Sbjct: 195 RVFDDAITIVQAAGAHLEVRHIANSAATLTAPELAYDLVRPGLAIYGLSPIPQVASAAEL 254 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ +T +A I ++ AG VSY RD+ IAV +GYADG P SG + E Sbjct: 255 GLRPAMTVQADIATAKRLPAGHGVSYAHHYVTARDTHIAVIPLGYADGIPRHASGHNGE- 313 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 LG I G I G++ MD + D+ D S+ G +FG Sbjct: 314 -----LGAPVSINGVTYAIAGRVCMDQIVIDVHDD-SVRAGHTATLFGDPTLGVPSAQQW 367 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A A+GT +Y++ RI R + Y Sbjct: 368 ADATGTISYEITTRIADRLPRMY 390 >gi|91977460|ref|YP_570119.1| alanine racemase [Rhodopseudomonas palustris BisB5] gi|91683916|gb|ABE40218.1| alanine racemase [Rhodopseudomonas palustris BisB5] Length = 409 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 10/365 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL A+ NW + + A AAVVK +AYG G ++ AL AG + FFV ++ E Sbjct: 36 LTVDLDAIVANWRKIEKTAVPAEAAAVVKGDAYGCGIGPVSKALAAAGCKTFFVATLGEA 95 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R P A I+VL G N PVI + +L + S A+ Sbjct: 96 GAVRAIAPDAVIYVLDGFFQTTGDEFARLNCRPVIGDLYELAEWDVYCRRTRWSGGAAIH 155 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL++ EA ++L+ISHLA A+ + +N+ Q+ FR + S Sbjct: 156 IDTGMNRLGLTVAEAQGIVPRIAA-GDHGITLVISHLAAAEALNHPMNARQVTAFREIAS 214 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL++SSG+ LGP + F + RPG +LYG +PM+ VV +ARI+ +R Sbjct: 215 LFTGVAASLSASSGVFLGPQFAFDMVRPGAALYGINPTPEADNPMKPVVDLKARIVQVRS 274 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YGG R + IAV + GYADGY D G I G Sbjct: 275 VERGDSVGYGGTWTARRPTRIAVLSAGYADGYFRAAGSNDGTR------GADVVIAGQRC 328 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI G+++MD+ D+TD + G + G I +D++ GT Y++L +G RY Sbjct: 329 PIAGRVSMDLLAVDVTDLPANAARRGLMATLIGDGITVDELGHHFGTIGYEVLTSLGARY 388 Query: 366 AKFYT 370 A+ Y+ Sbjct: 389 ARIYS 393 >gi|227494580|ref|ZP_03924896.1| alanine racemase [Actinomyces coleocanis DSM 15436] gi|226832314|gb|EEH64697.1| alanine racemase [Actinomyces coleocanis DSM 15436] Length = 397 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 95/403 (23%), Positives = 164/403 (40%), Gaps = 41/403 (10%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + R ID+ A+ +N + A + N + VVK +AYG G +A AL AG + Sbjct: 1 MVYSYPARALIDIAAITHNAKLLLAKAPNTQHLGVVKADAYGHGHASVAVALARAGYRAI 60 Query: 61 FVTSVEEGVKLRLYTPQA---RIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYS 113 V +EE + +R A + + + P + + S+ Q+ + Sbjct: 61 GVAQIEEALAVRDALDIAGFYDVMLFSWVIPADGTLVASEAIERGIEVAASTPVQVAMLN 120 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 L++DTG +R G +L E ++ ++ + SHLACAD+ + Sbjct: 121 DCAMLRNPARLHLKIDTGMSRAGATLDEFAQLIEDALAAPNIKIVGVWSHLACADELTED 180 Query: 174 ---VNSVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225 + Q + F + L ++S L P + + R GI +YG T Sbjct: 181 GMAATNAQKDVFDRACQMLSDYGVRDFTRHLGATSVTLWHPQLQYDMVRDGIGIYGLTPN 240 Query: 226 IN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 + + V+ A ++ +++ G VSYGG D + + +GY DG P Sbjct: 241 PETASSEELGLMPVMNLSANLMQVKRIKQGAKVSYGGTWVAETDRWLGLVPLGYGDGVPR 300 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE---------VGD 332 S SV+ GG+ P++G++ MD M D+ ++ + GD Sbjct: 301 HASNHAEV---SVYAGGRVM----RCPVVGRVCMDQFMIDLGPAVDAQGVDLPAPAVAGD 353 Query: 333 YIQIFGPD------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +FG +DD A A T NY+++ R+G+R + Y Sbjct: 354 TAVLFGNPERFPGCPSVDDWAQACDTINYEIVTRLGSRVPREY 396 >gi|297210110|ref|ZP_06926503.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910473|ref|ZP_07127925.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70] gi|296885310|gb|EFH24250.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888315|gb|EFK83506.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70] Length = 390 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 155/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 21 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 80 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 81 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 140 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + +H ACAD+ + + Q +RF+ +++ Sbjct: 141 DTGMGRLGIKDTNTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 199 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 200 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 259 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 260 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 307 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 308 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 365 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 366 CNLSRRLPRIY 376 >gi|218532193|ref|YP_002423009.1| alanine racemase [Methylobacterium chloromethanicum CM4] gi|218524496|gb|ACK85081.1| alanine racemase [Methylobacterium chloromethanicum CM4] Length = 342 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 117/352 (33%), Positives = 180/352 (51%), Gaps = 14/352 (3%) Query: 18 NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77 NW ++ A + A AVVK +AYG G +APAL+ AG + FFV + EG+ R P+ Sbjct: 3 ANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKMLPE 62 Query: 78 ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137 A ++VL G+ PG + L PV+ +L +++ M G + DTG NRLGL Sbjct: 63 AALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGGGPAALHV--DTGMNRLGL 120 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 S+ EAL + + G ++SHL A+ P +N+ Q F + + + + ASLA Sbjct: 121 SVAEALALAGDPVIARAGIDL-VMSHLVSAELPDDPLNARQAADFARVRAAFPQMRASLA 179 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +SSG L + L RPG +L+GG + +PM+ VV EA I+ +R AG Y Sbjct: 180 NSSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYN 239 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 + + +A ++GYADGYP + S G + G PI+G I+MD+ Sbjct: 240 ARWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGMPCPIVGLISMDL 288 Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D+TD+ G + G + +D V A+GT Y++L +G+RY + Y Sbjct: 289 IILDVTDASQARRGGTATLIGDSLDIDTVGQAAGTIGYEILTSLGSRYVRNY 340 >gi|304379251|ref|ZP_07361990.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304342110|gb|EFM08010.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140759|gb|EFW32611.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143734|gb|EFW35511.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA177] Length = 390 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 21 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 80 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 81 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 140 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q +RF+ +++ Sbjct: 141 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 199 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 200 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 259 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 260 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 307 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ VA T NY++L Sbjct: 308 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVL 365 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 366 CNLSRRLPRIY 376 >gi|325833467|ref|ZP_08165916.1| alanine racemase [Eggerthella sp. HGA1] gi|325485391|gb|EGC87860.1| alanine racemase [Eggerthella sp. HGA1] Length = 467 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 157/386 (40%), Gaps = 31/386 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL A+++N ++ R AVVK + YG G + A N+G V Sbjct: 92 RRWSWTEIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGV 151 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVS 121 +V E ++LR A I VL ++ ++P + S + + + GV Sbjct: 152 ATVNEAIELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVR 211 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 PY L V+TG NR+G+ E ++F + L +H A AD + +Q++R Sbjct: 212 APYHLAVNTGMNRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDFQIQVKR 271 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234 F + + A+S+ + P+ F + R GI++YG + Sbjct: 272 FIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSGVTRPMIDLHP 331 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI +R E VSYG + I +GYADG LSG Sbjct: 332 AMSVHARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGR-------- 383 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343 +KG +G I MD MF++ L +GD + + G + I L Sbjct: 384 ---TDVILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITL 440 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A GT NY+L R + Y Sbjct: 441 DDMANTLGTINYELACGFSLRMPRVY 466 >gi|304396143|ref|ZP_07378025.1| alanine racemase [Pantoea sp. aB] gi|304356512|gb|EFM20877.1| alanine racemase [Pantoea sp. aB] Length = 356 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 156/367 (42%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL+ N + + +R +VVK NAYG G E++ AL F + Sbjct: 2 SRPIIATINQQALRQNLAVVRQAAPASRVWSVVKANAYGHGIERVREALSA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE ++LR + I +L G ++ + D + Sbjct: 60 NMEEAIQLREQGWKKPILLLEGFFQPEDLQLIDRYRLTTSVHSNWQIKALASAQLSAPVD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++ +++H A A++ V +Q Sbjct: 120 IYLKMNSGMNRLGFRPEQVNGAWQKLRALSNVGEMTLMAHFADAENSQGLVAPLQRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + N +Q V+T Sbjct: 177 EQAAEGLSCPRSLSNSACTLWHPEAHFDWVRPGIILYGASPSGNWQDIAGSGLQPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +++ AG+ V YG + + I V A GYADGYP G Sbjct: 237 SEIIAVQQLQAGDGVGYGYRYHASTAQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G M ++G ++MDM D+T +G ++++G +K+D VA A+GT Y+L+ Sbjct: 286 VCVDGVMTQVVGAVSMDMITVDLTPCPQAGIGSAVELWGEQVKIDQVAKAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|15677500|ref|NP_274656.1| alanine racemase [Neisseria meningitidis MC58] gi|20137239|sp|Q9JYC4|ALR_NEIMB RecName: Full=Alanine racemase gi|7226902|gb|AAF42000.1| alanine racemase [Neisseria meningitidis MC58] gi|316984996|gb|EFV63950.1| alanine racemase [Neisseria meningitidis H44/76] gi|325140795|gb|EGC63306.1| alanine racemase [Neisseria meningitidis CU385] gi|325199755|gb|ADY95210.1| alanine racemase [Neisseria meningitidis H44/76] Length = 352 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 158/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYRILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLIRHWKKTVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|317490383|ref|ZP_07948867.1| alanine racemase [Eggerthella sp. 1_3_56FAA] gi|316910518|gb|EFV32143.1| alanine racemase [Eggerthella sp. 1_3_56FAA] Length = 467 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 158/386 (40%), Gaps = 31/386 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL A+++N ++ R AVVK + YG G + A N+G V Sbjct: 92 RRWSWTEIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGV 151 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVS 121 +V E ++LR A I VL ++ ++P + S + + + GV Sbjct: 152 ATVNEAIELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVR 211 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 PY L V+TG NR+G+ E ++F + L +H A AD + +Q++R Sbjct: 212 APYHLAVNTGMNRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDFQIQVKR 271 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQT 234 F + + A+S+ + P+ F + R GI++YG I + Sbjct: 272 FIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSIVTRPMIDLHP 331 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI +R E VSYG + I +GYADG LSG Sbjct: 332 AMSVHARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGR-------- 383 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343 +KG +G I MD MF++ L +GD + + G + I L Sbjct: 384 ---TDVILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITL 440 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A GT NY+L R + Y Sbjct: 441 DDMANTLGTINYELACGFSLRMPRVY 466 >gi|296138608|ref|YP_003645851.1| alanine racemase [Tsukamurella paurometabola DSM 20162] gi|296026742|gb|ADG77512.1| alanine racemase [Tsukamurella paurometabola DSM 20162] Length = 380 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 160/378 (42%), Gaps = 24/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL A+ +N + + A AV+K + YG G +A A G + VT+ Sbjct: 12 DRPTALIDLGAVTHNVRVVARHAPTADVMAVLKADGYGHGAVPVARAALAGGATELGVTT 71 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+E + LR I + G E+ I I V S + G Sbjct: 72 VDEALVLRDAGITVPIL-SWLSTSGYERAIAADVRIGVSSPRQLAEVLAAAGRAGAPAVL 130 Query: 125 ALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ--- 178 ++VDTG NR G++ E D ++ L +L + +HLA D+P VQ Sbjct: 131 HVKVDTGLNRNGVAPHEWATTRDALVDAERAGLARLQGVFTHLAHGDEPDHPFLDVQRDA 190 Query: 179 --LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + A+S+ L P+ HF L RPGI++YGG ++ ++ V+ Sbjct: 191 LAAAAADARAHGLYPTQVHAANSAAALTRPDLHFDLVRPGIAIYGGVPVPDRDFGLRPVM 250 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A +IL++ AG+ VSYG RD+++ + GYADG LSG Sbjct: 251 TFAAPVILVKPLAAGDGVSYGHTWIAPRDTVVGLVPAGYADGVWRPLSGRF--------- 301 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIKLD---DVALASGT 352 + ++G P +G++ MD + D+ D + GD +FG D GT Sbjct: 302 --EVTVQGRRFPQVGRVCMDQFVIDLGPDGGGVSEGDTAVLFGAAPGAARACDWGEKLGT 359 Query: 353 TNYDLLVRIGTRYAKFYT 370 +Y++L + R + YT Sbjct: 360 IDYEVLTAVRGRVHREYT 377 >gi|302337870|ref|YP_003803076.1| alanine racemase [Spirochaeta smaragdinae DSM 11293] gi|301635055|gb|ADK80482.1| alanine racemase [Spirochaeta smaragdinae DSM 11293] Length = 371 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 160/378 (42%), Gaps = 24/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL ++N ++ +G + VVK NAYG G K+A AG Q V + Sbjct: 2 RPTKARIDLDLYRHNIRVISKKTGGRKICLVVKANAYGHGSVKMAKVGIEAGAQALGVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123 V+E ++LR A IF+ + + ++IP +S + + + Sbjct: 62 VDEALELREAGIAAPIFLFTVADVSEVPQLVRFDIIPFVSDLAYIKQIEREAQNQEKVAM 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+VDTG RLG +EAL N K + + +H + +D +Q+ R Sbjct: 122 VHLKVDTGMGRLGCRPEEALSLASFVGNSKNLMMGGLCTHFSLSDISDRAYTLLQINRLN 181 Query: 184 TLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHPM----QT 234 L+ + I L ++ + P ++ + RPG+ ++G + + Sbjct: 182 LLVDTLRSQHIPYGLVHAANTGAIIQYPEAYYDMVRPGLGIFGYPPDLIHMGRDRADLRP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ E +I LI+ GE VSYG D+ I V A G+ DGYP +LS Sbjct: 242 VLSMETKIGLIKTIKKGESVSYGRTFVAENDTHIGVVAAGFCDGYPRSLSN--------- 292 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDDVALASG 351 G IKG P++G + MD + D+ L ++ D + + G + + D+ Sbjct: 293 --KGFVTIKGKHYPVIGMVCMDQLIVDLGRDLQVDPDDTVVLLGHGRNEPTMVDLTQRGN 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 +++ RI R K Y Sbjct: 351 IIVNEVICRIPARVPKVY 368 >gi|229083529|ref|ZP_04215867.1| Alanine racemase [Bacillus cereus Rock3-44] gi|228699783|gb|EEL52430.1| Alanine racemase [Bacillus cereus Rock3-44] Length = 389 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 153/378 (40%), Gaps = 29/378 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++++L A+ NN + + N AVVK N+YG +A AG V + Sbjct: 10 TWVEVNLDAIYNNVTHIKKMIPENVEVFAVVKGNSYGHDYVPVAKTALEAGATRLAVAFL 69 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR A I VL P + + ++ + + ++ V + Sbjct: 70 DEALVLRRSGITAPILVLGPSSPRVVNVAAENDVALTVFQREWVEEALEIWDSSVPLRFH 129 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L D+G R+G+ +E F + L + +H + AD+ + Q F Sbjct: 130 LNFDSGMGRIGIREREELKGFLRSLEEAPFFDLEGVYTHFSTADEVGTSYFDKQYNTFLK 189 Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 +S +G A+S+ + F R GI +YG T + ++ Sbjct: 190 QLSWLQGFGVDPKFIHAANSAATMRFHGITFNAVRIGIVMYGLTPSLEIFPFIPIQLEPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ + I++ + G+ +SYG + + IA IGYADG+ L G Sbjct: 250 LSLHTTVSHIKQVIKGDGISYGVTYRTKIEEWIATVPIGYADGWLRRLQGF--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 K + G VPI+G++TMD M + + +G + + G I ++VA SG Sbjct: 301 ---KVLVDGERVPIVGRVTMDQLMLHLP--YEVPLGTKVTLIGKQGDEYISANEVAEYSG 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY+++ I R + + Sbjct: 356 TINYEIITTISFRVPRIF 373 >gi|298207069|ref|YP_003715248.1| alanine racemase [Croceibacter atlanticus HTCC2559] gi|83849703|gb|EAP87571.1| alanine racemase [Croceibacter atlanticus HTCC2559] Length = 368 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 158/378 (41%), Gaps = 21/378 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + L+I+L+AL +N++ + + + + AVVK YG +A L G Sbjct: 1 MPKAQETVLEINLSALGHNYNYLKSKVNTSVKLMAVVKAFGYGSDSVMVAKELQTLGADY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V EGV+LR I VL+ K + + L P I S+ L + Sbjct: 61 FAVAYTSEGVRLRDENITTPILVLHP-LANAFKELIERCLEPSIYSLKTLREFIATAQTL 119 Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNS 176 +P L+ ++G NRLG + ++ + N +++ ++SHL A D + Sbjct: 120 KQKEYPIHLKFNSGLNRLGFNEKDVPEMYSLLKNTTAVKVTSLMSHLVASEDHNLTDFTH 179 Query: 177 VQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+ F + + +++SGIL P HF + R GI LYG + + Sbjct: 180 NQISSFVSFTEDFKTEFGYMPMRHQSNTSGILNFPEAHFDMVRSGIGLYGYGNSSTEDLA 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + T ++ I + G V Y R ++ A +G+ADG Sbjct: 240 LKPIATLKSVISQLHNIPKGSSVGYNRGFIADRTTVSATIPLGHADGIGRQYG------- 292 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G + G PILG + MDMTM D+T + GD + IFG + A + Sbjct: 293 ---KGKGCFIVNGKKAPILGNVCMDMTMVDVTGI-ECQEGDEVIIFGAYQNASEFAKGAQ 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y++L + R + + Sbjct: 349 TISYEILTSVSQRVKRTF 366 >gi|329113263|ref|ZP_08242046.1| Alanine racemase, catabolic [Acetobacter pomorum DM001] gi|326697404|gb|EGE49062.1| Alanine racemase, catabolic [Acetobacter pomorum DM001] Length = 381 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 184/366 (50%), Gaps = 15/366 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L ++L+A+ N+ + + G AAVVK +AYGLG ++AP L AG + FFV V+EG Sbjct: 24 LTVNLSAIAENYRYLKSRLGKTVCAAVVKADAYGLGVAQVAPVLEKAGAEHFFVAHVDEG 83 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 + LR + + VL+G P ++ NL PV++S+ Q+ A+ Sbjct: 84 LALRPYLSSTTSVTVLHGPRPDAAEVCVRNNLRPVLNSLEQIAVLRELAAKIDKPLDVAI 143 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +R GLS + + + +SL++SHLACAD P + N++Q ERF Sbjct: 144 QLDTGMSRFGLSEADIHKLAVSPELLEGLSVSLVMSHLACADTPKNPANTMQRERFEAYA 203 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 SL++SSGI LG + F L RPG +LYG + +P++ VV +A I+ IR Sbjct: 204 RMLPKATLSLSASSGIFLGSQFQFDLVRPGAALYGVAPQNEGENPLKPVVGLQAHILQIR 263 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G+ V YG + +A A GY + + G + KGY Sbjct: 264 HLSKGDRVGYGLTWQAHGPCRVATIATGY-----------ADGFARAGAAAGCAWYKGYR 312 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PILG+I+MD D+++ +E +++ +D VA A GT Y++L +G R Sbjct: 313 LPILGRISMDSMTVDLSEVPEGLLEEDSMVELLNASYGVDAVAKAEGTIGYEVLTSLGRR 372 Query: 365 YAKFYT 370 Y + YT Sbjct: 373 YHRVYT 378 >gi|16799958|ref|NP_470226.1| hypothetical protein lin0885 [Listeria innocua Clip11262] gi|20137216|sp|Q92DC9|ALR_LISIN RecName: Full=Alanine racemase gi|16413335|emb|CAC96117.1| lin0885 [Listeria innocua Clip11262] Length = 368 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 150/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L AVVK NAYG G + A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR + ++ G ++ + N I S + ++ Sbjct: 66 AILDEALALREAGFRNEFILVLGATRKEDANLAAKNNI---SVTVFREDWLDDLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA L I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRSREEAQRIETTIAIDHQMILEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA- 238 F+ ++S + +S+ LL P F R GIS+YG T + + + Sbjct: 183 FQAILSSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFELKPA 242 Query: 239 ---EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 ++G PI+G+I MD T+ + + G + I G D + DD A G Sbjct: 294 ---HVLVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAAEYLG 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLTERIPRKY 366 >gi|315641800|ref|ZP_07896804.1| alanine racemase [Enterococcus italicus DSM 15952] gi|315482475|gb|EFU73014.1| alanine racemase [Enterococcus italicus DSM 15952] Length = 370 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 145/377 (38%), Gaps = 26/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+ I A++ N ++ LS + AV+K N YG G ++A GV F V Sbjct: 7 RPTRITIHTEAIRENLRTVQEHLSADQSLFAVIKANGYGHGAVQVAKIAEEEGVAGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV---ISSVPQLTFYSKLMSCGV 120 +++EG++LR +F+L + I+ L + Q Sbjct: 67 TIDEGIELREAGITLPVFILGLVDCAYLPIVSQYQLAIPVASTDWLKQAEQAYLKNPWDE 126 Query: 121 SHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L ++TG R+G E + + L + +H A AD + Q Sbjct: 127 PIAVHLAIETGMGRIGFIDSGEVKQAEVSLAQAEGFYLEGVFTHFATADQADATYWQEQK 186 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVV 236 RF I+ + ++S L L R G+++YG + P + Sbjct: 187 ARFFETIAVLEAPRYIHVTNSATQLWHEPLGNLVRYGVAMYGLNPSSDALQPSYSLVPAL 246 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + ++++ +++ + V YG + T+D I IGYADGY L G Sbjct: 247 SLTSQLVQVKQLPSESGVGYGHTYETTQDEWIGTVPIGYADGYVRKLQGF---------- 296 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + G I+G++ MD M + I VG + + G D I L D+A GT Sbjct: 297 --HVLVNGQFCEIVGRVCMDQLMIRLP--ADIPVGTTVTLIGTDGDKTISLQDIASYIGT 352 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y++ + R + Y Sbjct: 353 IHYEVACLLSERLPREY 369 >gi|313624465|gb|EFR94470.1| alanine racemase [Listeria innocua FSL J1-023] Length = 368 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 149/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + + AVVK NAYG G + A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNRLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR + ++ G ++ + N I S + ++ Sbjct: 66 AILDEALALREAGFRNEFILVLGATRKEDANLAAKNNI---SVTVFREDWLNDLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA L I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRSREEAQRIETTIALDHQMILEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA- 238 F+ ++ + +S+ LL P F R GIS+YG T + + + Sbjct: 183 FQAILRSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKNSLPFELKPA 242 Query: 239 ---EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELSPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 ++G PI+G+I MD T+ + + G + I G D + DD A G Sbjct: 294 ---HVLVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVTADDAAEYLG 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLTERIPRKY 366 >gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21] gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21] Length = 820 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 161/378 (42%), Gaps = 22/378 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + ++E L+I+L AL++N + +L + +VK +YG G +IA L V Sbjct: 453 LQTHE-TTLEINLNALEHNLNVYKSLLQQGTKLMVMVKAFSYGSGSFEIANLLQFNKVDY 511 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EG+ LR I V+ + + + L P I S +L + + Sbjct: 512 LTVAYADEGIALRKSGITLPIVVMSPG-EDTFEQMIEYRLEPEIYSFSELEAFISKLPSE 570 Query: 120 V--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNS 176 ++P ++VDTG +RLG + + + SHLA + S Sbjct: 571 KMEAYPVHIKVDTGMHRLGFEPDDVDRLLAKLKRTDKIVVKSVFSHLAASGIREHDNFTS 630 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+ F +A++S I P F + R GI LYG + +S P Sbjct: 631 EQIRLFDVFTQDLARGLGYHFIRHIANTSAISRFPQAQFDMVRLGIGLYGVSADEYRSLP 690 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q+V I ++ AG+ V Y +L+ D IA IGYADGY Sbjct: 691 LQSVTRLRTGITQVKYIKAGDTVGYNRNGRLSGDGTIATVKIGYADGYSRRFGNGV---- 746 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 GK IKG +VP +G I MDM M D+T ++ G+ + + G ++ + +A A G Sbjct: 747 ------GKMLIKGRLVPTVGDICMDMCMLDVTGI-DVKEGEEVLVMGEELSPETLAKAIG 799 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L I R + Y Sbjct: 800 TIPYEILTSISQRVRRVY 817 >gi|323353285|ref|ZP_08087818.1| alanine racemase [Streptococcus sanguinis VMC66] gi|322121231|gb|EFX92994.1| alanine racemase [Streptococcus sanguinis VMC66] Length = 369 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVTPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + S + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQSYPL--GTPVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|161511189|ref|NP_813012.2| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides thetaiotaomicron VPI-5482] gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14] gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14] Length = 849 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 146/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK AYG G +IA L V V + Sbjct: 490 LEVNLGAMVANLNHYRSMLRHPETKMICMVKAAAYGAGSYEIAKTLQEHHVDYLAVAVAD 549 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR + I ++ K +FD L P + + L K + P Sbjct: 550 EGSELRKAGITSSIIIMDPELTS-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 608 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG S+ E ++ + SH +D Q+E F Sbjct: 609 HVKLDTGMHRLGFSVDEIPLLIRRLKSQNAVIPRSVFSHFVGSDSAQFDFFTRQQIELFE 668 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P F + R GI LYG + N + T Sbjct: 669 KGSQELQEAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDNSIINNVS--TL 726 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y LTR S IA IGYADG L Sbjct: 727 KTTILQIRDVPGEDTVGYSRMGHLTRPSRIAAIPIGYADGLNRHLG----------RGNA 776 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ GT Y++L Sbjct: 777 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDKAVIFGDDLPITTLSDKLGTIPYEVL 835 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 836 TSISNRVKRVY 846 >gi|329296350|ref|ZP_08253686.1| alanine racemase [Plautia stali symbiont] Length = 356 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 96/367 (26%), Positives = 157/367 (42%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+ AL++N + + +AR +VVK NAYG G ++ +L F + Sbjct: 2 SRPTGATINQQALRHNLAIVRQAAPHARVWSVVKANAYGHGIARVWQSLAE--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G + + D + Sbjct: 60 NMEEAILLREQGWKKLILLLEGFFHADDLTLIDRYRLTTSVHSNWQIQALAKAQLSAPVD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++A H +++H A A++P V +Q Sbjct: 120 VYLKINSGMNRLGFRPEQAQAAWHKLRALPSVGEMTLMAHFADAENPQGLVEPMQRV--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SLA+S+ L P HF RPGI LYG + + S +Q V+T Sbjct: 177 EQAAEGLNCPRSLANSATTLWHPQAHFDWVRPGIILYGASPSGDWQDIASTGLQPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +++ AGE V YG + I + A GYADGYP G Sbjct: 237 SEIIGVQQLSAGEGVGYGYRYHAAALQRIGIVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G LG I+MDM M D+ +G ++++G ++K+D+VA A+GT Y+L+ Sbjct: 286 VSVDGIRTQTLGAISMDMMMIDLEPCPQAGIGSRVELWGNEVKIDEVAKAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] Length = 857 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 158/373 (42%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ N + + + + + ++K +AYG G +IA L + V V Sbjct: 496 TTLEVNLNAVVKNLNHYRSFMKPHTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVA 555 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + I ++ K +FD +L P + S L K P Sbjct: 556 DEGVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALVKEAEKEGITGFP 614 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + + + SH AD D ++ Q E Sbjct: 615 VHIKLDTGMHRLGFDPHKDMDELIRRLKRQNAIIPRSVFSHFVGADSDDFDTFSAQQFEL 674 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F+ I + +S+GI P+ + R G+ LYG + NK + Sbjct: 675 FKLGADKLQAAFDHKILFHMDNSAGIEHFPDRQMDMCRLGLGLYGINSRNNKIINNVS-- 732 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ I + AGE + Y + L RDSLIA IGYADG LS Sbjct: 733 TLKTTILQIHQLPAGESIGYSRKTYLERDSLIAAIPIGYADGLDRRLSNRR--------- 783 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +G I MD+ M D+TD + GD ++IFG + + ++ A T Y+ Sbjct: 784 -GYCLVNGQKAEYVGNICMDVAMIDVTDI-DCKEGDSVEIFGDHLPVTVLSDAIETIPYE 841 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 842 VLTGISNRVKRVY 854 >gi|226223505|ref|YP_002757612.1| alanine racemase [Listeria monocytogenes Clip81459] gi|254823845|ref|ZP_05228846.1| alanine racemase [Listeria monocytogenes FSL J1-194] gi|254931268|ref|ZP_05264627.1| alanine racemase [Listeria monocytogenes HPB2262] gi|254992344|ref|ZP_05274534.1| alanine racemase [Listeria monocytogenes FSL J2-064] gi|255522573|ref|ZP_05389810.1| alanine racemase [Listeria monocytogenes FSL J1-175] gi|300764095|ref|ZP_07074090.1| alanine racemase [Listeria monocytogenes FSL N1-017] gi|259710069|sp|C1L1F6|ALR_LISMC RecName: Full=Alanine racemase gi|225875967|emb|CAS04671.1| Putative alanine racemase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582818|gb|EFF94850.1| alanine racemase [Listeria monocytogenes HPB2262] gi|293593068|gb|EFG00829.1| alanine racemase [Listeria monocytogenes FSL J1-194] gi|300515085|gb|EFK42137.1| alanine racemase [Listeria monocytogenes FSL N1-017] gi|328475449|gb|EGF46215.1| alanine racemase [Listeria monocytogenes 220] gi|332311293|gb|EGJ24388.1| Alanine racemase [Listeria monocytogenes str. Scott A] Length = 368 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 154/378 (40%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLEDLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ EA QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAHYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|46907119|ref|YP_013508.1| alanine racemase [Listeria monocytogenes serotype 4b str. F2365] gi|47092094|ref|ZP_00229887.1| alanine racemase [Listeria monocytogenes str. 4b H7858] gi|67460119|sp|Q721S9|ALR_LISMF RecName: Full=Alanine racemase gi|46880386|gb|AAT03685.1| alanine racemase [Listeria monocytogenes serotype 4b str. F2365] gi|47019534|gb|EAL10274.1| alanine racemase [Listeria monocytogenes str. 4b H7858] gi|328467042|gb|EGF38137.1| alanine racemase [Listeria monocytogenes 1816] Length = 368 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 154/378 (40%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + ++ Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLEELTLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ EA QL I +H A AD + QL + Sbjct: 123 RIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 183 FQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELKPA 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G + PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAHYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLNERIPRKY 366 >gi|157691928|ref|YP_001486390.1| alanine racemase [Bacillus pumilus SAFR-032] gi|157680686|gb|ABV61830.1| alanine racemase [Bacillus pumilus SAFR-032] Length = 393 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 33/385 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ A ++ AVVK NAYG G ++A +G + V Sbjct: 6 REVWIEVNLDAIKRNIEAIQAHIPRKSKIMAVVKANAYGHGSVEVARQALESGATELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQLTFYSKLMSCG 119 S+EEG+ LR +A I VL G P I + + Sbjct: 66 SLEEGIVLRRAKIEAPILVL-GFTPLDCVKRAAAWRIDLSGLREDWIVEANEILAEEESQ 124 Query: 120 VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + VDTG RLG+ +E L + + I +H + AD+P +Q Sbjct: 125 RRLGIHVNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEPDPDFTLLQ 184 Query: 179 LERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229 F + +GI+ + +++ + P + + R GI LYG + Sbjct: 185 HSIFIDFLRFLKKQGIKLPTVHMNNTAAAIAFPEFSADMIRLGIGLYGLYPSQYIESLDA 244 Query: 230 HPMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ ++ +ARI +++ VSYG RD +IA IGYADGY LS Sbjct: 245 VQLEPALSLKARIAFVKEMVTEPRTVSYGATYVAKRDEVIATIPIGYADGYSRALSNR-- 302 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 G +G +PI G++TMDMTM + + + + G+ + I+G +I +D Sbjct: 303 ---------GFMLFRGERMPIAGRVTMDMTMISLGE-MKAKQGEEVVIYGRQKGGEISVD 352 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A T NY+++ + R +FY Sbjct: 353 EIAEMLNTINYEVIATLSRRVPRFY 377 >gi|120437675|ref|YP_863361.1| alanine racemase [Gramella forsetii KT0803] gi|117579825|emb|CAL68294.1| alanine racemase [Gramella forsetii KT0803] Length = 369 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 163/369 (44%), Gaps = 23/369 (6%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L L +N+ + + + A+ +VVK +AYG +IA L G F V VEE Sbjct: 9 LEINLGNLAHNYRFLRSKTDKEAKFLSVVKAHAYGSDSVEIAKKLEELGTDYFAVAYVEE 68 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS--CGVSHPYA 125 G++LR I VL+ P + I + L P + S L + L ++P Sbjct: 69 GIRLRENGISKPILVLHP-QPSHFEEIIEHCLEPNLYSQKTLESFVSLAERLNQKNYPVH 127 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184 ++++TG NRLG E N +++ + SHLA ++D Q++ FR Sbjct: 128 IKLNTGLNRLGFDQSEIPRVFETIKNTNSIKIASVFSHLAASEDWQEREFTLSQIDLFRK 187 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + ++SG++ P F + R GI LYG ++ ++ V + Sbjct: 188 MTWQLIENLDYEPLLHICNTSGVINYPKAAFSMVRTGIGLYGYSNDKTIDPHLKPVGKLK 247 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I IRK G V Y K ++S IA IG+ADG Sbjct: 248 TIISQIRKLDPGASVGYNRAFKTEKESKIATLPIGHADGINRIYG----------KQKAG 297 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGTTNYDLL 358 F+ G PI+G + MD+ M D+T E GD + IF GP +D A A GT +Y+L+ Sbjct: 298 VFVNGKYAPIVGNVCMDIIMIDVTGI-DCEEGDEVIIFGGPQHPVD-FARAGGTISYELI 355 Query: 359 VRIGTRYAK 367 I R + Sbjct: 356 TGIQRRVTR 364 >gi|83748582|ref|ZP_00945602.1| Alanine racemase [Ralstonia solanacearum UW551] gi|207743279|ref|YP_002259671.1| alanine racemase protein [Ralstonia solanacearum IPO1609] gi|83724790|gb|EAP71948.1| Alanine racemase [Ralstonia solanacearum UW551] gi|206594676|emb|CAQ61603.1| alanine racemase protein [Ralstonia solanacearum IPO1609] Length = 375 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 156/367 (42%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + ++R AVVK NAYG G E++ L F + Sbjct: 3 RPIQAVIHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q + +L G P ++ L + QL G Sbjct: 61 LDEAVRLRQLGWQGPVLLLEGFFKPEDLALVEQYRLTTTVHCEEQLRMLELARLKG-PVS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + + + ++H + AD P QL F Sbjct: 120 VQLKINTGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL++S+ L P H RPG+ LYG + + + + +T + Sbjct: 178 RATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGMAADIEGTGLMSAMTLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I I+ G + YG + ++ + I + A GYADGYP G H Sbjct: 237 SELIAIQDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGGNH-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+ + VG + ++G + +D+VA A+GT Y+L+ Sbjct: 290 VLVDGVRTRMVGRVSMDMITVDLAEVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALALRVP 356 >gi|322377447|ref|ZP_08051938.1| alanine racemase [Streptococcus sp. M334] gi|321281647|gb|EFX58656.1| alanine racemase [Streptococcus sp. M334] Length = 367 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 159/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPEGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR RI +L + + ++ ++ + + Sbjct: 65 SNIDEAIELRQAGLSKRILILGVSEIEAVSLAKEYDITLTVAGLEWIQALLSSEEDLAGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEAEQAQDLLQQHGARIEGIFTHFATADEESDDYFNEQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ KG+ ++S+ L F R G ++YG +N + ++ +T Sbjct: 185 KTILASMKGLPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEILNLPYDLKPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFV---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIHLPKLYPL--GTKVTLIGSNGGKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|194014730|ref|ZP_03053347.1| alanine racemase [Bacillus pumilus ATCC 7061] gi|194013756|gb|EDW23321.1| alanine racemase [Bacillus pumilus ATCC 7061] Length = 393 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 166/385 (43%), Gaps = 33/385 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N ++ A ++ AVVK NAYG G ++A +G + V Sbjct: 6 REVWIEVNLDAIKRNIEAIQAHIPRKSKIMAVVKANAYGHGSVEVARQALESGATELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP----VISSVPQLTFYSKLMSCG 119 S+EEG+ LR +A I VL G P I + + Sbjct: 66 SLEEGIVLRRAKIEAPILVL-GFTPLDCVKRAAAWRIDLSGLREDWIVEANEILAEEESQ 124 Query: 120 VSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + VDTG RLG+ +E L + + I +H + AD+P +Q Sbjct: 125 RRLGIHVNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEPDPDFTQLQ 184 Query: 179 LERFRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229 F + +GI+ + +++ ++ P + + R GI LYG + Sbjct: 185 HSIFIDFLRFLKKRGIKLPTVHMNNTAAAIVFPEFSADMIRLGIGLYGLYPSQYIESLDA 244 Query: 230 HPMQTVVTAEARIILIRK-ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ ++ +ARI +++ VSYG D +IA IGYADGY LS Sbjct: 245 VQLEPALSLKARIAFVKEMVTKPRTVSYGATYVAKPDEVIATIPIGYADGYSRALSNR-- 302 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 G +G +PI G++TMDMTM + + + + G+ + I+G +I +D Sbjct: 303 ---------GFMLFRGKRMPIAGRVTMDMTMISLGE-MKAKQGEEVVIYGRQKGGEISVD 352 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A T NY+++ + R +FY Sbjct: 353 EIAEMLNTINYEVIATLSRRVPRFY 377 >gi|71904184|ref|YP_280987.1| alanine racemase [Streptococcus pyogenes MGAS6180] gi|123639333|sp|Q48RM8|ALR_STRPM RecName: Full=Alanine racemase gi|71803279|gb|AAX72632.1| alanine racemase [Streptococcus pyogenes MGAS6180] Length = 366 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 164/381 (43%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + I+S+ + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+GL +A++ +S + + I +H A AD+ + Sbjct: 120 ECQGLKVHVKVDSGMGRIGLRSSKAVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD + + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|281422046|ref|ZP_06253045.1| alanine racemase [Prevotella copri DSM 18205] gi|281403835|gb|EFB34515.1| alanine racemase [Prevotella copri DSM 18205] Length = 389 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 156/388 (40%), Gaps = 34/388 (8%) Query: 2 HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 ++IDL +K N+ +L + AV+K +AYG G IA L G + F Sbjct: 7 QMERRSWIEIDLDQIKQNYFIYKNSLQSDVEIMAVIKADAYGHGDAHIARWLSEQGCRLF 66 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V++++E V LR + I +L P K + + + ++ + L G Sbjct: 67 AVSNIDEAVGLRNAGIKGEILILGYTSPKYAKTLS---YLDLSQAIVSEEYAEALSQAGQ 123 Query: 121 SHPYALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNS 176 +DTG NR+GL + + +HL AD + + Sbjct: 124 RVKCQFAIDTGMNRIGLDGDNTSSCEEIIRKYSDSLIVEGLFTHLCVADTDTEEAKKFTY 183 Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQ----LTRPGISLYGGTDKIN 227 Q+ +F+ + + ++ L N F+ + R GI LYG + Sbjct: 184 GQIRKFKAVADAVSDLKLPFVHCCNSAGGLYYLNNNSEFEGVGKIVRLGIVLYGLKPDVE 243 Query: 228 KSHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 P + +T ++ + +++ GE + YG + ++ +A GYADG LS Sbjct: 244 NQLPDGVKPAMTWKSVVSMVKNVHPGETIGYGRTFTVEKEMKVATVTTGYADGLNRLLSN 303 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341 G I GY PI+G+I MD T+ D+T+ +++G + I G Sbjct: 304 -----------KGFVMINGYKAPIVGRICMDQTLVDVTEIPDVKMGTEVVIIGKSGDLIY 352 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A GT Y+++ I R +FY Sbjct: 353 TSDDMAQDLGTIGYEVICNITKRVQRFY 380 >gi|315281568|ref|ZP_07870169.1| alanine racemase [Listeria marthii FSL S4-120] gi|313614777|gb|EFR88320.1| alanine racemase [Listeria marthii FSL S4-120] Length = 368 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 151/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQKQLPENVALWAVVKANAYGHGIIEVAKTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR Q ++ G ++ + N I S + + Sbjct: 66 AILDEALALREAGFQDDFILVLGATRQEDANLAAKNRI---SLTVFREDWLDNLGLEAPL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD+G RLG+ +EA K QL I +H A AD + QL + Sbjct: 123 QIHLKVDSGMGRLGIRSAEEARHIESTIAENKQLQLEGIYTHFATADQLETSYFEQQLAK 182 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA- 238 F T+++ K + +S+ LL +F R GIS+YG T + + Sbjct: 183 FTTILTSLKERPIFVHTANSAASLLQSQMNFDAIRFGISMYGLTPSKEIKTSLPFELRPA 242 Query: 239 ---EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++L+++ G+ VSYG T +A IGYADG SG Sbjct: 243 LALYTEMVLVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G PI+G++ MD T+ + + G + I G D I DD A Sbjct: 294 ---HVLVDGEHAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGTDHGNTITADDAAEYLD 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 349 TINYEVTCLLTERIPRKY 366 >gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482] Length = 773 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 146/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK AYG G +IA L V V + Sbjct: 414 LEVNLGAMVANLNHYRSMLRHPETKMICMVKAAAYGAGSYEIAKTLQEHHVDYLAVAVAD 473 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR + I ++ K +FD L P + + L K + P Sbjct: 474 EGSELRKAGITSSIIIMDPELTS-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 532 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG S+ E ++ + SH +D Q+E F Sbjct: 533 HVKLDTGMHRLGFSVDEIPLLIRRLKSQNAVIPRSVFSHFVGSDSAQFDFFTRQQIELFE 592 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P F + R GI LYG + N + T Sbjct: 593 KGSQELQEAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDNSIINNVS--TL 650 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y LTR S IA IGYADG L Sbjct: 651 KTTILQIRDVPGEDTVGYSRMGHLTRPSRIAAIPIGYADGLNRHLG----------RGNA 700 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ GT Y++L Sbjct: 701 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDKAVIFGDDLPITTLSDKLGTIPYEVL 759 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 760 TSISNRVKRVY 770 >gi|291529405|emb|CBK94991.1| alanine racemase [Eubacterium rectale M104/1] Length = 376 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 28/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58 M N +R IDL A+ N SM N L AAVVK + YG G E ++ L + Sbjct: 1 MAINR-IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEVLEPLPYLW 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + V + E ++L + I +L P Q + I D ++ P + + S++ Sbjct: 60 GYAVATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVA 119 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G + +E+ D + I +H A AD+ S Sbjct: 120 KNKTCKIHIKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPAF 179 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q + F+ +I+ + E ++S+GI+ P + + R GI+LYG Sbjct: 180 EQFDLFKRMIALVEAREVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDKS 239 Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V++ +R+ +++ G +SYGG + IA +GY DGY LS Sbjct: 240 KISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN--- 296 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G IKG PI G++ MD M D+TD +++GD + + G D I ++ Sbjct: 297 --------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITME 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 + SG NY+ I R + Y Sbjct: 349 QLGELSGRFNYEFACLITPRVPRIY 373 >gi|261392126|emb|CAX49626.1| alanine racemase [Neisseria meningitidis 8013] Length = 352 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 158/365 (43%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AVVK +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYQILKEMHGG-KLLAVVKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLIRHWKKTVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGGDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PSNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|329117453|ref|ZP_08246170.1| alanine racemase [Streptococcus parauberis NCFD 2020] gi|326907858|gb|EGE54772.1| alanine racemase [Streptococcus parauberis NCFD 2020] Length = 367 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K++L A+K+N + + + AVVK NAYG G ++A A + + Sbjct: 1 MISSLHRPTVAKVNLNAIKDNIKQVQSHIPTGKKAYAVVKANAYGHGAVEVAKA-IDPDI 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L I Q + + N+ +SS+ L + + Sbjct: 60 DAYCVSNLDEALELRQAGITKEILILGIILADQLALAIENNVTLTVSSLEWLEDAKQSGA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G+ + + + + + +H A AD+ ++ Sbjct: 120 DLSKLHVHLKVDSGMGRIGVRSLSEANALIAALLAEDSHIDGVFTHFATADEANADKFKQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L+ A + +S+ L F R GI +YG ++ +P+ Sbjct: 180 QLHFFTELVESLDHKPALVHASNSATSLWHSETIFNAVRLGIVIYGLNPSGTDLDLPYPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ E R++ ++ AG+ V YG + ++ IGYADG+ + G Sbjct: 240 TAALSLETRLVHVKTINAGDTVGYGATYQAKEAEVVGTIPIGYADGWTRDMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G+++MD + +G + + G D I DVA Sbjct: 295 -------VLVDGQACEIIGRVSMDQVTIRLPKVYP--IGTKVTLIGQDGSSVISATDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCVLSDRVPRKY 366 >gi|328544029|ref|YP_004304138.1| Alanine racemase, biosynthetic [polymorphum gilvum SL003B-26A1] gi|326413773|gb|ADZ70836.1| Alanine racemase, biosynthetic [Polymorphum gilvum SL003B-26A1] Length = 415 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 144/365 (39%), Positives = 201/365 (55%), Gaps = 10/365 (2%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +D A+ +NW ++ L AR AA VK +AYG G AL +G FFV E Sbjct: 49 LTVDTAAIADNWRALAGQLGPGARCAATVKADAYGCGIPATVRALAASGCDTFFVALPAE 108 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYAL 126 G+ +R P A I+VL G+ PG + L PV+ S+P+L ++ S V A+ Sbjct: 109 GIAVREAAPGATIYVLDGLFPGTAPAYAEARLRPVLGSLPELEEWALFCRSRKVRLEAAV 168 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTG NRLGL+ QEA + L+L+ISHLAC +P +N QLERFRTL Sbjct: 169 HVDTGMNRLGLTEQEAERLAGDRDLLDSFALALVISHLACGAEPGHPLNRQQLERFRTLS 228 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 H+ SLA+S+GI LG +YHF L RPGI+LYGG + +PM+ V EARI+ +R Sbjct: 229 GHFPDAVRSLANSAGIFLGADYHFDLVRPGIALYGGKALDSFDNPMRPVARVEARILQLR 288 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE V YG + + RD+ +AV A GYADG G D GG G+I G+ Sbjct: 289 TVRAGEGVGYGLAQTVRRDTRLAVVAAGYADGLLRRAGGSDDR------PGGHGWIVGHR 342 Query: 307 VPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VP+ G+I+MDM D+TD + G +++ GP + ++A + T +Y+ L +G R Sbjct: 343 VPVFGRISMDMQALDVTDVPAALLRRGAMVELIGPHVAASELAAVADTIDYEYLTALGRR 402 Query: 365 YAKFY 369 + + Y Sbjct: 403 FHRRY 407 >gi|228477128|ref|ZP_04061766.1| alanine racemase [Streptococcus salivarius SK126] gi|228251147|gb|EEK10318.1| alanine racemase [Streptococcus salivarius SK126] Length = 367 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 158/381 (41%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K+DL+A+ N + + +T AVVK NAYG G ++A L V Sbjct: 1 MISSLHRPTLAKVDLSAISENIEQVVSHIPKKVQTFAVVKANAYGHGAVEVAKHLSKQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L + P + + N+ ++S+ L Sbjct: 60 DGFCVSNLDEALELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMAKDQGL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+G+ Q D + I +H A AD+ Sbjct: 120 DLTGLTCHIKIDSGMGRIGVRSQGDADSLIAGLKALGADVEGIFTHFATADEADDSKFKR 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L+++ + +S+ + F R G+ +YG ++ + + Sbjct: 180 QLAFFTDLVNNLVDRPRLVHASNSATSIWHAETVFNAVRLGVVIYGLNPSGSVLDLPYNI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + E ++ ++ +G+ V YG T D +I IGYADG+ L G Sbjct: 240 RPALRLETALVHVKTLPSGQDVGYGATYTTTADEVIGTIPIGYADGWTRDLQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + PI+G+++MD + + G + + G + I +VA Sbjct: 294 ------HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCLLSDRVPRSY 366 >gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] Length = 828 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V V +E Sbjct: 470 LEVNLGAMIANLNYYRSKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 529 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A + ++ K +FD L P + S L K + P Sbjct: 530 GSDLRKAGITASVIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 588 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG + ++ + + SH +D Q+E F Sbjct: 589 VKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDAPQFDAFTRKQIETFEK 648 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +S+GI P F + R GI LYG + N M V T + Sbjct: 649 ASMLLQEAFPYKILRHICNSAGIERFPGAQFDMVRLGIGLYGISPIDN--SIMNNVSTLK 706 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L Sbjct: 707 TTILQIRDVPEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGNGR----------AY 756 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD ++IFG + + ++ T Y++L Sbjct: 757 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLETIPYEVLT 815 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 816 SVSTRVKRIY 825 >gi|187736333|ref|YP_001878445.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835] gi|187426385|gb|ACD05664.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835] Length = 367 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 155/371 (41%), Gaps = 17/371 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +ID AL++N + + + + R A+VK AYG G E + AL F V + Sbjct: 7 PRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVAT 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHP 123 V E ++R + F+L G+ + I +SS+ + ++ G + Sbjct: 67 VAEACRVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVH 126 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L VDTG R G E T L + SHL+ A D S Q+ F Sbjct: 127 VHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLEGVFSHLSAASDDIS-FTHGQISGFT 185 Query: 184 TLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTA 238 ++ ++ L SS+ + + R G LYG + + + ++ +T Sbjct: 186 EAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELRPTMTL 245 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +RI LIR VSY + +A IGYADGY LS G Sbjct: 246 YSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQ----------GA 295 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + +I G P+LG++TMD M D+T +E GD ++I GP++ +++ + T ++L Sbjct: 296 RVYINGQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVL 355 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 356 TSISARVPRIY 366 >gi|169829733|ref|YP_001699891.1| alanine racemase [Lysinibacillus sphaericus C3-41] gi|168994221|gb|ACA41761.1| Alanine racemase [Lysinibacillus sphaericus C3-41] Length = 389 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 155/387 (40%), Gaps = 33/387 (8%) Query: 1 MHSN---EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + + IDL A++ N ++ + N + AVVK NAYG G +A A AG Sbjct: 17 MKTQQYFRPTKAMIDLQAIQQNIKNLKKFIRPNVQIIAVVKANAYGHGDVAVAQAALEAG 76 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V + +E + +R + ++ G P I I + + + + Sbjct: 77 ATILAVATPDEALHIR-AHFEEPDILILGASPVSFAPIAAQQRIMLTVYASEWVQQAAPL 135 Query: 117 SCG--VSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 ++VD+G R+G+ Q+ L + +L+ I +H A AD+ + Sbjct: 136 LAKEAEPLQLHIKVDSGMGRIGIRSEQDLLALYQTIESIDNVELNGIFTHFATADEKDTT 195 Query: 174 VNSVQLERFRTLISHYKGIEASLASS---SGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q++ F + ++ + +S + ++ N + R GIS+YG + Sbjct: 196 YFDEQVQFFESCLAVMPKKPLLVHASNTAASLVKDSNLQYDAVRYGISMYGLSPSSYVES 255 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 +Q + E+ ++ +++ GE V YG + I IGYADG L G Sbjct: 256 ILPFALQPAFSLESELVHVKEIKKGESVGYGATYVAPSNMWIGTIPIGYADGVIRKLGGQ 315 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + I G +PI+G+I MD M + + +G+ + + G I Sbjct: 316 ------------EVLIDGQRMPIVGRICMDQCMVALPKAY--AIGEKVTLIGQQGQNRIS 361 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +D+ A T NY++ I R + Y Sbjct: 362 IDEWATKLETINYEIPCIITARVPRIY 388 >gi|228995614|ref|ZP_04155280.1| Alanine racemase [Bacillus mycoides Rock3-17] gi|228764186|gb|EEM13067.1| Alanine racemase [Bacillus mycoides Rock3-17] Length = 397 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R ++++L A+ NN + + + AVVK NAYG +A AG Sbjct: 9 MGKSSFYRDTWVEVNLDAIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 68 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I V+ P + + ++ + + ++ Sbjct: 69 ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 128 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + + +L I +H A AD+ + Sbjct: 129 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGIYTHFATADEVETSYF 188 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ + F R GI++YG + + Sbjct: 189 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 248 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ + I++ + G+ +SY + + IA IGYADG+ L G Sbjct: 249 YLPIKLEPALSLHTTVAHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 308 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + ++G VPI+G+ITMD M + + +G + + G I Sbjct: 309 ------------EVLVQGKRVPIVGRITMDQCMLHLP--CEVPLGTKVTLIGQQGDEYIS 354 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA S T NY+++ I R + + Sbjct: 355 ATEVAEYSNTINYEIIATISFRVPRVF 381 >gi|325122726|gb|ADY82249.1| alanine racemase 1, biosynthetic [Acinetobacter calcoaceticus PHEA-2] Length = 356 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 162/363 (44%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRNALQYNLNRVKQLATNSKIVSMVKANAYGHGIKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127 +R Q + ++ G+ E I VI Q + K ++ Sbjct: 66 IRELGFQQPVTLIEGVFSEDEMPIAIKQKFECVIHHQQQFEWLIKHKQAYINQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKDPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + AS +S+ I P HF RPGI LYG + ++ ++ V+T A +I Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADQTVHDLDLKPVMTFSAEVIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + E V YG + IA+ +IGY DGYP I Sbjct: 243 LNHIQTNEHVGYGSTFCAKQAMDIAIVSIGYGDGYPRAY-----------IKQNYVAIDK 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM D+T + +++G ++++GP +DDVA A+GT Y+LL R+ R Sbjct: 292 QLCAVVGRVSMDMIAIDVTG-MQVKLGTPVELWGPHRLVDDVADANGTIGYELLCRLSNR 350 Query: 365 YAK 367 + Sbjct: 351 PTR 353 >gi|229827601|ref|ZP_04453670.1| hypothetical protein GCWU000182_02990 [Abiotrophia defectiva ATCC 49176] gi|229788239|gb|EEP24353.1| hypothetical protein GCWU000182_02990 [Abiotrophia defectiva ATCC 49176] Length = 401 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 168/386 (43%), Gaps = 29/386 (7%) Query: 1 MHSN-EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M S + +I+L A++ N+ + G N + A +VK +AYG G K+ L G Sbjct: 13 MKSTLKRTWAEINLDAIEYNYKKIKEHIGENVKFAGIVKADAYGHGSVKVGAKLQELGAD 72 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-TNLIPVISSVPQLTFYSKLMS 117 V+S++E ++LR I +L Q + V L + ++ + Sbjct: 73 YLAVSSIDEAMELRFNGITMPILILGHTPREQVDRLICFNITQAVTCEAKALEYSAEAVK 132 Query: 118 CGVSHPYALQVDTGFNRLGL-----SLQEALDFTHNSFNKKLGQLSLIISHLACADDP-- 170 C + ++VDTG +RLG + ++ N I +H A +D+ Sbjct: 133 CKGTLKIHIKVDTGMSRLGYLCEGEHFEHGIEGIVNVCKLSNLDAEGIFTHFAVSDEDGE 192 Query: 171 -SSHVNSVQLERFRTLISHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGT 223 QLE F+ +I+ + + A++ + P+ + + RPG+ LYG Sbjct: 193 ECKEYTDHQLELFKAVITEVEKKSGKAFLLHHCANTGATVNRPDSYMDMVRPGLLLYG-Y 251 Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + K+ ++ V++ + + I+ G +SYGG T + + V GYADG+ L Sbjct: 252 GEFAKALGLKPVMSMKTTVSTIKVYPKGTKISYGGIYTTTGKTRMGVVPYGYADGFMRCL 311 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343 S S + V G+I MDM M D+TD SI+VG I+IFG + + Sbjct: 312 SNKYSFMTEEGA-----------VRQRGRICMDMCMIDLTDKFSIDVGSEIEIFGENNPI 360 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 + +A +GT Y+L+ + R + Y Sbjct: 361 EAMAEMAGTIPYELVCAVSKRVHRIY 386 >gi|304385540|ref|ZP_07367884.1| alanine racemase [Pediococcus acidilactici DSM 20284] gi|304328044|gb|EFL95266.1| alanine racemase [Pediococcus acidilactici DSM 20284] Length = 375 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 148/377 (39%), Gaps = 25/377 (6%) Query: 4 NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL +D A++ N + L + AV+K +AYG G +A AG F V Sbjct: 6 HRASRLVVDAAAIRQNVKKEIERLDHQSELFAVIKADAYGHGLIPVARYTEQAGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR I VL + + + N+ + V LT + ++ Sbjct: 66 AILDEALTLREAGFAEPILVLGITNVKWAALAAEKNVSLTVGDVEWLTKAAPQLTAEHPL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLER 181 L +DTG R+G + L+ K + +H A AD+ ++Q++R Sbjct: 126 KVHLALDTGMGRIGFQESDGLNQAAKLLIKDPRFVFEGVFTHFATADEKDPTYFNLQVDR 185 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F L+ + +++ L + L R G+ +YG + + +Q + Sbjct: 186 FHKLVDTLPEKPRYVHVSNTATSLWHAACNGNLIRFGVGIYGMNPSGTVLEPPYDLQPAM 245 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E+R+ + G VSYG +D I IGYADGYP L G Sbjct: 246 TLESRLSFSKLLKKGRSVSYGATYTAEQDEWIGTIPIGYADGYPRCLQGF---------- 295 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352 + G+ I+G++ MD M + G + + G I + D+A GT Sbjct: 296 --HVLVDGHFCEIVGRVCMDQLMIRLPHEYPA--GTPVILAGQSQGKSISMTDIADYVGT 351 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++ R + Y Sbjct: 352 INYEITCGFTERLPRVY 368 >gi|312866452|ref|ZP_07726670.1| alanine racemase [Streptococcus downei F0415] gi|311098146|gb|EFQ56372.1| alanine racemase [Streptococcus downei F0415] Length = 367 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 163/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K+DL+A+ +N + + +T AVVK NAYG G +A V Sbjct: 1 MISSLHRPTLAKVDLSAISSNIKQIQDHVPQSVKTFAVVKANAYGHGAVAVASHTQRL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++EG++LR + I VL + PG+ ++ D L I+S+ L Sbjct: 60 DGFCVSNIDEGIELRQAGIRKPILVLGVVLPGEVPLVRDYRLTLTIASLEWLELAQAKPL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + + VD+G R+G+ + + Q+ I +H A AD+ Sbjct: 120 DLSNLLVHIAVDSGMGRIGVRSLAEANDLIAGLRQAGCQVKGIFTHFATADEADDRKFQE 179 Query: 178 QLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPM 232 QL F+ L++ Y ++S+ L F R G+ +YG + + + Sbjct: 180 QLAFFKELVAGLDYCPELVHASNSATSLWHSEGIFNALRLGLVIYGLNPSGQELSLPYKI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E ++ ++K AG V YG +++ I +GYADG+ + G D Sbjct: 240 KPALSLETALVHVKKVPAGADVGYGATYTSSQEEWIGTLPLGYADGWTRDMQGFD----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G PI+G+++MD + S + G + + G + I DVA Sbjct: 295 -------VLVAGQRCPIVGRVSMDQITIRLPQSYPL--GTKVTLIGKNGDQLISATDVAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 QRGTINYEVLCLLSDRVPREY 366 >gi|260867595|ref|YP_003233997.1| alanine racemase 2, PLP-binding [Escherichia coli O111:H- str. 11128] gi|257763951|dbj|BAI35446.1| alanine racemase 2, PLP-binding [Escherichia coli O111:H- str. 11128] gi|323179296|gb|EFZ64866.1| alanine racemase [Escherichia coli 1180] Length = 356 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 161/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 ++ SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQVAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a] gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b] gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a] gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b] Length = 846 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 547 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 605 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 606 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTRRQIELFE 665 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P+ F + R GI LYG + N + V T Sbjct: 666 KGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVSTL 723 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 724 KTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RGNA 773 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 774 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYEVL 832 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 833 TSISTRVKRVY 843 >gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23] gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23] Length = 820 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 461 LEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 520 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 521 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 579 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 580 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTRRQIELFE 639 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P+ F + R GI LYG + N + V T Sbjct: 640 KGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVSTL 697 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 698 KTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RGNA 747 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 748 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYEVL 806 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 807 TSISTRVKRVY 817 >gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 830 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 150/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 471 LEVNLGAMVANLNHYRSMLRHPETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 530 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 531 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 589 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 590 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTRRQIELFE 649 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P+ F + R GI LYG + N + V T Sbjct: 650 KGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVSTL 707 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 708 KTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RGNA 757 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 758 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYEVL 816 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 817 TSISTRVKRVY 827 >gi|292571687|gb|ADE29602.1| Alanine racemase [Rickettsia prowazekii Rp22] Length = 404 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 187/408 (45%), Gaps = 58/408 (14%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+L+A+KNN+ + + A AVVK N YGLG +IA AL Q FFV + EEG Sbjct: 6 LEINLSAIKNNYRLLQDICKTALVGAVVKANGYGLGAMQIAKALIKENCQYFFVATSEEG 65 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 + LR I VL G+ + NL PV++++ Q+ + K + G P L Sbjct: 66 INLRKVLNNDITILVLNGVFTHDALELIQYNLTPVLNNLSQIEIWQKFSNLKGKILPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NR GL+ E ++ K L IISHLA +++ + N +QL RF+ + Sbjct: 126 HFNTGLNRFGLNSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--------------- 231 ++ ++AS A+S GI LG +YHF L RPG +LYG I S Sbjct: 186 EYFPNVKASFANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYTEEFESNTAALT 245 Query: 232 ----------------------------MQTVVTAEARIILIRKALAGELVSYGGQKKLT 263 +Q VT +A II ++ + Y Sbjct: 246 TTACINKCPDVSVRLTPKLPLKGSHTVRLQNPVTLKAPIIDLQNLTLDSHIGYNMTFTTK 305 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 RDS+IA +GYADG+ S G+ FI VPI+G+++MD+ D+T Sbjct: 306 RDSVIATLPLGYADGFSRNFSSQ-----------GEVFINSCSVPIVGRVSMDLINIDVT 354 Query: 324 DSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D EV G +I G D +A GT Y++L +G+RY + Y Sbjct: 355 DLPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKY 402 >gi|15603973|ref|NP_220488.1| alanine racemase [Rickettsia prowazekii str. Madrid E] gi|6647413|sp|Q9ZE52|ALR_RICPR RecName: Full=Alanine racemase gi|3860664|emb|CAA14565.1| ALANINE RACEMASE (alr) [Rickettsia prowazekii] Length = 404 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 187/408 (45%), Gaps = 58/408 (14%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+L+A+KNN+ + + A AVVK N YGLG +IA AL Q FFV + EEG Sbjct: 6 LEINLSAIKNNYRLLQDICKTALVGAVVKANGYGLGAMQIAKALIKENCQYFFVATSEEG 65 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 + LR I VL G+ + NL PV++++ Q+ + K + G P L Sbjct: 66 INLRKVLNNDITILVLNGVFTHDALELIQYNLTPVLNNLSQIEIWQKFSNLKGKILPCYL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NR GL+ E ++ K L IISHLA +++ + N +QL RF+ + Sbjct: 126 HFNTGLNRFGLNSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYL 185 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--------------- 231 ++ ++AS A+S GI LG +YHF L RPG +LYG I S Sbjct: 186 EYFPNVKASFANSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYTEEFESNTAALT 245 Query: 232 ----------------------------MQTVVTAEARIILIRKALAGELVSYGGQKKLT 263 +Q VT +A II ++ + Y Sbjct: 246 TTACINKCPDVSVRLTPKLPLKGSYTVRLQNPVTLKAPIIDLQNLTLDSHIGYNMTFTTK 305 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 RDS+IA +GYADG+ S G+ FI VPI+G+++MD+ D+T Sbjct: 306 RDSVIATLPLGYADGFSRNFSSQ-----------GEVFINSCSVPIVGRVSMDLINIDVT 354 Query: 324 DSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D EV G +I G D +A GT Y++L +G+RY + Y Sbjct: 355 DLPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKY 402 >gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185] gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185] Length = 830 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 147/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + A+ + +VK +AYG G +IA L V V + Sbjct: 471 LEVNLGAMVENLNHYRAMLRHPETKVICMVKASAYGAGSYEIAKTLQEHHVDYLAVAVAD 530 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR + I ++ K +FD L P + + L K + P Sbjct: 531 EGSELRKAGITSSIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 589 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG + E + + SH +D Q+E F Sbjct: 590 HVKLDTGMHRLGFGIDEIPLLIRRLKAQNAVIARSVFSHFVGSDSPQFDSFTRQQIELFE 649 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P F + R GI LYG + N + V T Sbjct: 650 KGSQELQAAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDN--SIIHNVSTL 707 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR A + V Y + L R S IA IGYADG L Sbjct: 708 KTTILQIRDVPAEDTVGYSRKGHLERPSRIAAIPIGYADGLNRHLG----------RGNA 757 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 758 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYEVL 816 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 817 TSISTRVKRVY 827 >gi|229003241|ref|ZP_04161078.1| Alanine racemase [Bacillus mycoides Rock1-4] gi|228758011|gb|EEM07219.1| Alanine racemase [Bacillus mycoides Rock1-4] Length = 389 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 156/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R ++++L A+ NN + + + AVVK NAYG +A AG Sbjct: 1 MGKSSFYRDTWVEVNLDAIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I V+ P + + ++ + + ++ Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + + +L I +H A AD+ + Sbjct: 121 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGIYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ + F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ + I++ + G+ +SY + + IA IGYADG+ L G Sbjct: 241 YLPIKLEPALSLHTTVEHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + ++G VPI+G+ITMD M + + +G + + G I Sbjct: 301 ------------EVLVQGKRVPIVGRITMDQCMLHLP--CEVPLGTKVTLIGQQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA S T NY+++ I R + + Sbjct: 347 ATEVAEYSNTINYEIIATISFRVPRVF 373 >gi|17546090|ref|NP_519492.1| alanine racemase [Ralstonia solanacearum GMI1000] gi|20137209|sp|Q8XZM4|ALR_RALSO RecName: Full=Alanine racemase gi|17428386|emb|CAD15073.1| probable alanine racemase protein [Ralstonia solanacearum GMI1000] Length = 375 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 156/367 (42%), Gaps = 18/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL NN + + ++R AV+K NAYG G E+ L F + Sbjct: 3 RPIQAVIHGPALVNNLQVVRRHAADSRVWAVIKANAYGHGIERAYEGLRQ--ADGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E V+LR Q I +L G P ++ L + QL G Sbjct: 61 LDEAVRLRQLGWQGPILLLEGFFKPEDLALVEQYRLTTTVHCEEQLRMLELARLKG-PVS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG +RLG + ++ + ++H + AD P QL F Sbjct: 120 IQLKINTGMSRLGFAPAAYRAAWEHARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAE 239 G EASL++S+ L P H RPG+ LYG + + + +T + Sbjct: 178 QATQGLPG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ G V YG + + + I + A GYADGYP G D + Sbjct: 237 SELIAVQDLQPGATVGYGSRFEAEQPMRIGIVACGYADGYPRHAPGWDGNY-------TP 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+ + VG + ++G + +D+VA A+GT Y+L+ Sbjct: 290 VLVDGVRTRMVGRVSMDMITVDLAEVPGARVGAPVTLWGQGLPIDEVAHAAGTVGYELMC 349 Query: 360 RIGTRYA 366 + R Sbjct: 350 ALAPRVP 356 >gi|257792515|ref|YP_003183121.1| alanine racemase [Eggerthella lenta DSM 2243] gi|257476412|gb|ACV56732.1| alanine racemase [Eggerthella lenta DSM 2243] Length = 441 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 157/386 (40%), Gaps = 31/386 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +IDL A+++N ++ R AVVK + YG G + A N+G V Sbjct: 66 RRWSWTEIDLNAIRHNTSAVKQRIDNGVRLMAVVKADGYGHGAVRCAKTALNSGADYLGV 125 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVS 121 +V E ++LR A I VL ++ ++P + S + + + GV Sbjct: 126 ATVNEAIELREALVNAPILVLSQPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADAYGVR 185 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 PY L V+TG NR+G+ E ++F + L +H A AD + +Q++R Sbjct: 186 APYHLAVNTGMNRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDFQIQVKR 245 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234 F + + A+S+ + P+ F + R GI++YG + Sbjct: 246 FIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHPSGVTRPMIDLHP 305 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI +R E VSYG + I +GYADG LSG Sbjct: 306 AMSVHARITDVRTVPMSEGVSYGMNYRSPGSVKICTVPVGYADGLRRGLSGR-------- 357 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343 +KG +G I MD MF++ L +GD + + G + I L Sbjct: 358 ---TDVILKGQRCHQVGNICMDQCMFEVDLRVYGSRRRLDPMIGDEVLLVGREGDSVITL 414 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 DD+A GT NY+L R + Y Sbjct: 415 DDMANTLGTINYELACGFSLRMPRVY 440 >gi|305680044|ref|ZP_07402854.1| alanine racemase [Corynebacterium matruchotii ATCC 14266] gi|305660664|gb|EFM50161.1| alanine racemase [Corynebacterium matruchotii ATCC 14266] Length = 378 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 155/383 (40%), Gaps = 25/383 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M L IDL A+ N + L A+ VVK + Y G +A + G Sbjct: 1 MVVVNLLETVIDLDAIATNTRILKNLVQPAQLMCVVKADGYNHGAIPVARTVLANGADQL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119 V ++ E ++LR A I D N+ + S+ K + Sbjct: 61 GVATLAEALELREAGITAPILCWIWSPEQDFAAALDANIHLAVVSMAHAQAIVKYAAGKP 120 Query: 120 -VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK----KLGQLSLIISHLACADDPSSHV 174 +++DTG +R G+ + + +++ ++SHLACAD+P + Sbjct: 121 EKLVQTTIKIDTGLHRSGVDESQWEAVFTLLKDAGTATGNIEVTGVMSHLACADEPGNPA 180 Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINK 228 N Q F I+ + + L++S +L P+++ ++ RPG+++YG + Sbjct: 181 NDTQAAAFNRAIALGRKLGLELPVNHLSNSPAVLTRPDFYHEMVRPGLAVYGYSPLADGN 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +Q ++ ++ +++ GE SY + + +AV GYADG P Sbjct: 241 DYGLQPAMSWVGKVTVVKPIEPGEGTSYNLTWRAAKPGYLAVIPAGYADGLPRRAQNHV- 299 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDV 346 + I G+ P +G+I MD + D+ D+ ++ GD IFGP + ++ Sbjct: 300 ----------EVTIGGHRYPQVGRICMDQFVIDLGDNPHNVRPGDEAIIFGPGGMSATEL 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A NY ++ R + Y Sbjct: 350 ASRIQDINYAVICAPTGRTVRRY 372 >gi|238924324|ref|YP_002937840.1| alanine racemase [Eubacterium rectale ATCC 33656] gi|238875999|gb|ACR75706.1| alanine racemase [Eubacterium rectale ATCC 33656] Length = 376 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 102/385 (26%), Positives = 170/385 (44%), Gaps = 28/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58 M N +R IDL A+ N SM N L AAVVK + YG G E ++ L + Sbjct: 1 MAINR-IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEVLEPLPYLW 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + V + E ++L + I +L P Q + I D ++ P + + S++ Sbjct: 60 GYAVATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVA 119 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G + +E+ D + I +H A AD+ S Sbjct: 120 KNKTCKIHIKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPAF 179 Query: 177 VQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q + F+ +I+ +G+E ++S+GI+ P + + R GI+LYG Sbjct: 180 EQFDLFKRMIALVEARGVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDKS 239 Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V++ +R+ +++ G +SYGG + IA +GY DGY LS Sbjct: 240 KISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN--- 296 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G IKG PI G++ MD M D+TD +++GD + + G D I ++ Sbjct: 297 --------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITME 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 + SG NY+ I R + Y Sbjct: 349 QLGELSGRFNYEFACLITPRVPRIY 373 >gi|270157427|ref|ZP_06186084.1| alanine racemase [Legionella longbeachae D-4968] gi|269989452|gb|EEZ95706.1| alanine racemase [Legionella longbeachae D-4968] Length = 353 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 164/361 (45%), Gaps = 17/361 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + I+ +AL +N + + + A+VK NAYG G +AP L V F V +EE Sbjct: 1 MVIEPSALLHNLEQIKRFAPGKKIIAMVKANAYGCGVHIVAPVL-EGHVDAFGVACIEEA 59 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + L + + G+ E I + + P + ++V Sbjct: 60 LILHKIGSRTPCILFQGVFSPDEFKIVAQHQFGCVIHQPHQLQWLLNTPLNTPIKLWVKV 119 Query: 129 DTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +TG +RLG QE + + + +++HLACAD+P N Q+ F IS Sbjct: 120 NTGMHRLGFKPQELHEVMSALQTCTWVDKDIGLMTHLACADEPERIENYQQISLFEN-IS 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + S+A+S+ I+ P H + RPGI LYG + N+ + V+ + I Sbjct: 179 ITGFSQRSIANSAAIISFPQTHADVVRPGIMLYGVSPFANQTSIELGLLPVMRFVSAISA 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + V Y G K + S+I + A GY DGYP + +++G Sbjct: 239 VHHNPPFAPVGYSGIWKSEKHSVIGIVAAGYGDGYPRHI-----------AENTPVWVQG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 VPI+G+++MDM D+T+ ++ G ++++G +I ++ VA A+GT+ Y+LL +I R Sbjct: 288 KEVPIVGRVSMDMLAVDLTEHQEVKPGAPVELWGKNILVERVAKAAGTSGYELLCQISER 347 Query: 365 Y 365 Sbjct: 348 V 348 >gi|325690295|gb|EGD32299.1| alanine racemase [Streptococcus sanguinis SK115] Length = 369 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 144/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I L + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILALGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLTRF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGRVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTSVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|319638630|ref|ZP_07993392.1| alanine racemase [Neisseria mucosa C102] gi|317400379|gb|EFV81038.1| alanine racemase [Neisseria mucosa C102] Length = 352 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L+ N+ + L GN + AV+K +AYG G + A AL + F V + Sbjct: 2 RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+EGV+LR + I +L G+ E D + Sbjct: 60 VDEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFAHHEWQRPTTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGSVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP S I G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAIDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ S +G ++++G I +++VA +G Y++L I R Sbjct: 288 KRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVAEVAGMIPYEILCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|302333717|gb|ADL23910.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus JKD6159] Length = 382 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 155/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q +RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVVGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|291525106|emb|CBK90693.1| alanine racemase [Eubacterium rectale DSM 17629] Length = 376 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 28/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQ 58 M N +R IDL A+ N SM N L AAVVK + YG G E ++ L + Sbjct: 1 MAINR-IRADIDLDAILYNMESMHNKLKPGTMMAAVVKADGYGHGAEAVSEILEPLPYLW 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + V + E ++L + I +L P Q + I D ++ P + + S++ Sbjct: 60 GYAVATSNEAMELIAAGRKKPILILGLSFPEQFEEIVDNDVRPAVCTYETAKELSRIAVA 119 Query: 119 -GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G + +E+ D + I +H A AD+ S Sbjct: 120 KNKTCKIHIKIDTGMCRIGFQVTEESADIIAQIAKLPNIMIEGIFTHFARADELSKEPAF 179 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q + F+ +I+ + E ++S+GI+ P + + R GI+LYG Sbjct: 180 EQFDLFKRMIALVEAREVEIPIKHCSNSAGIVEIPECNMDMVRAGITLYGLWPSEEVDKS 239 Query: 232 ---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V++ +R+ +++ G +SYGG + IA +GY DGY LS Sbjct: 240 KISLKPVMSLHSRVAYVKELEPGRHISYGGTFTVEHPMRIATVPVGYGDGYSRGLSN--- 296 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G IKG PI G++ MD M D+TD +++GD + + G D I ++ Sbjct: 297 --------KGWVLIKGKKAPICGRVCMDQFMVDVTDIPDVKIGDAVTLLGKDGDETITME 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 + SG NY+ I R + Y Sbjct: 349 QLGELSGRFNYEFACLITPRVPRIY 373 >gi|209543468|ref|YP_002275697.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5] gi|209531145|gb|ACI51082.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5] Length = 387 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 182/366 (49%), Gaps = 13/366 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL A+ N+ + G A VK +AYGLG +I P L AG + FFV + E Sbjct: 19 LTIDLDAVAANYRILRDRVGPRTICGAAVKADAYGLGAARIVPVLAEAGCRTFFVAHLAE 78 Query: 68 GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125 G +R L A IFVL G PG E + + L+PV++S+ Q+ + L G P A Sbjct: 79 GAAIRPLLGTDATIFVLNGAMPGTEAALHEHGLVPVLNSLEQIARWRDLARQAGRDLPAA 138 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQVD+G +R GLS + + L++SHLACAD+P+ N Q F L Sbjct: 139 LQVDSGMSRFGLSDADVDALAARDGSLAGITPLLVMSHLACADEPAHPSNHAQRAAFLRL 198 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + ASLA+SSG+ +G ++HF + RPG +LYG +PMQ VV +ARI+ Sbjct: 199 RARLPAAPASLAASSGLFMGSDWHFDMVRPGAALYGINPTPGWPNPMQPVVRLQARIVQT 258 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G V YG R S IA A+GY DG+P G P Sbjct: 259 RWIGPGTAVGYGAAFIADRPSRIATLAVGYGDGFPRAAGGHGHAVLPERPAA-------- 310 Query: 306 MVPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 +PI+G+I+MD D+TD + G + + GP +D A A+GT Y+LL +G Sbjct: 311 KLPIIGRISMDCLAVDVTDIGDAPLDAGTALDLIGPHHSIDSAAAAAGTIGYELLTGLGA 370 Query: 364 RYAKFY 369 RY + Y Sbjct: 371 RYHRLY 376 >gi|94989166|ref|YP_597267.1| alanine racemase [Streptococcus pyogenes MGAS9429] gi|94993056|ref|YP_601155.1| alanine racemase [Streptococcus pyogenes MGAS2096] gi|166969429|sp|Q1JA50|ALR_STRPB RecName: Full=Alanine racemase gi|166969430|sp|Q1JKA0|ALR_STRPC RecName: Full=Alanine racemase gi|94542674|gb|ABF32723.1| alanine racemase [Streptococcus pyogenes MGAS9429] gi|94546564|gb|ABF36611.1| Alanine racemase [Streptococcus pyogenes MGAS2096] Length = 366 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 164/381 (43%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + I+S+ + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+GL + ++ +S + + I +H A AD+ + Sbjct: 120 ECQGLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGVTYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD ++ + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|291563798|emb|CBL42614.1| alanine racemase [butyrate-producing bacterium SS3/4] Length = 391 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 164/384 (42%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + ++DL ++ N +M L + VVK +AYG G +A + Sbjct: 1 MEFDRIY-AEVDLGRIEENMEAMKEHLRPGTKMYGVVKTDAYGHGAVPVARTIDRFVC-G 58 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 + V +V+EG+KLR + + I L + G+ + + ++ + S + Sbjct: 59 YAVATVDEGLKLRRHGIEKEILSLGPVSAGRYQECLENDISLPFFEYRRAKELSDAAAAE 118 Query: 119 GVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G + + VDTG +R+GL E +++ +++ + +H A AD+ Sbjct: 119 GKTAKIHIAVDTGMSRIGLFPDEGSVETVKEIAELPALRIAGMFTHFARADEADKTNAGE 178 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q RF K ++S+GI+ P+++ R GI++YG + Sbjct: 179 QYSRFHAFCDAVKAAGVDVPVCHCSNSAGIVELPDFNMDAVRAGITIYGLYPSDEVKQDI 238 Query: 233 Q---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ I I++ G VSYGG K + IA + GY DGYP LSG Sbjct: 239 ISLKPAMALKSFITYIKEIGPGTEVSYGGTFKAEKTMRIATVSAGYGDGYPRNLSG---- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 G+ I G ILG+I MD M D+T + GD + + G +I +++ Sbjct: 295 -------KGEVLIHGKRAKILGRICMDQFMVDLTGIPEAKEGDSVTLVGRDGNQEITMEE 347 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A SG +Y++ IG R + Y Sbjct: 348 LAEISGGFHYEIPCLIGKRVPRRY 371 >gi|323439214|gb|EGA96941.1| alanine racemase [Staphylococcus aureus O11] Length = 372 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 3 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 62 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 63 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+P + + Q +RF+ +++ Sbjct: 123 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGD-MTTEQYQRFKDMVN 181 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 182 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 241 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 242 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 290 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESSQSVEVAAEKQHTINYEVL 347 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 348 CNLSRRLPRIY 358 >gi|293609464|ref|ZP_06691766.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827916|gb|EFF86279.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 356 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 162/363 (44%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK NAYG G + AL + F V ++EG++ Sbjct: 8 IDRNALQYNLNRVKQLATNSKIVSMVKANAYGHGIKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQ 127 +R Q + ++ G+ E I +I Q + K ++ Sbjct: 66 IRELGFQQPVTLIEGVFSEDEMPIAIKQKFECIIHHQQQFEWLIKHKQAYINQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG E ++ ++ + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKNPEIIEVIKTLKSEGFTCVLAMHFANADVD---HPLNEQQKQQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + AS +S+ I P HF RPGI LYG + ++ ++ V+T A +I Sbjct: 183 ACDPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADQTVHDLDLKPVMTFSAEVIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + E V YG T+ IA+ +IGY DGYP I Sbjct: 243 LNHIQTNEHVGYGSTFCATQAMDIAIVSIGYGDGYPRAY-----------IKPNYVAIDK 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++G+++MDM D+T + +++G ++++GP +DDVA A+GT Y+LL R+ R Sbjct: 292 QPCAVVGRVSMDMIAIDVTG-MKVKLGTPVELWGPHRLVDDVADANGTIGYELLCRLSNR 350 Query: 365 YAK 367 + Sbjct: 351 PTR 353 >gi|323442408|gb|EGB00037.1| alanine racemase [Staphylococcus aureus O46] Length = 372 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 3 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 62 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 63 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+P + + Q +RF+ +++ Sbjct: 123 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGD-MTTEQYQRFKDMVN 181 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 182 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 241 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 242 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 290 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 347 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 348 CNLSRRLPRIY 358 >gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] Length = 824 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 148/370 (40%), Gaps = 22/370 (5%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++DL A+ N + + + + +VK +AYG G +IA L + GV V +E Sbjct: 465 LEVDLAAIAANLNYFRSFMKPETKIVCMVKASAYGAGSVEIAKTLQDRGVDYLAVAVADE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G LR + I ++ +D S+ + + + P + Sbjct: 525 GADLRKAGITSNIIIMNPEMSSFNTLFAYDLEPEVYDFSLLEALIRAAKQQGITNFPIHI 584 Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRT 184 ++DTG RLG + ++ + SH +D P + Q E F Sbjct: 585 KLDTGMKRLGFDPLHDMPALIDRLHHQAALIPRSVFSHFVGSDSPAFDAFSDHQFELFDK 644 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + +S+GI P H + R G+ LYG N H + V T + Sbjct: 645 ASQQLQAAFSHKILRHICNSAGIERFPQRHLDMVRLGLGLYGVDPIDN--HIINNVTTLK 702 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR AGE V Y + L R+S IA IGYADG L Sbjct: 703 TTILQIRDVQAGETVGYSRKGVLERNSRIAAIPIGYADGLNRHLGNRR----------AY 752 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD +++FGP + + ++ A T Y++L Sbjct: 753 CLVNGRKAYYVGNICMDVCMIDVTDIP-CKEGDSVEVFGPHLPITVLSDALETIPYEILT 811 Query: 360 RIGTRYAKFY 369 + R + Y Sbjct: 812 SVSNRVKRIY 821 >gi|94991109|ref|YP_599209.1| alanine racemase [Streptococcus pyogenes MGAS10270] gi|166969431|sp|Q1JF94|ALR_STRPD RecName: Full=Alanine racemase gi|94544617|gb|ABF34665.1| Alanine racemase [Streptococcus pyogenes MGAS10270] Length = 366 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 164/381 (43%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + I+S+ + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+GL + ++ +S + + I +H A AD+ + Sbjct: 120 ECQGLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSNLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD ++ + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|21911099|ref|NP_665367.1| alanine racemase [Streptococcus pyogenes MGAS315] gi|28895216|ref|NP_801566.1| alanine racemase [Streptococcus pyogenes SSI-1] gi|56808267|ref|ZP_00366035.1| COG0787: Alanine racemase [Streptococcus pyogenes M49 591] gi|139473190|ref|YP_001127905.1| alanine racemase [Streptococcus pyogenes str. Manfredo] gi|209559906|ref|YP_002286378.1| alanine racemase [Streptococcus pyogenes NZ131] gi|25452781|sp|Q8K5Z8|ALR_STRP3 RecName: Full=Alanine racemase gi|166969433|sp|A2RCT3|ALR_STRPG RecName: Full=Alanine racemase gi|226711064|sp|B5XI21|ALR_STRPZ RecName: Full=Alanine racemase gi|21905309|gb|AAM80170.1| putative alanine racemase [Streptococcus pyogenes MGAS315] gi|28810462|dbj|BAC63399.1| putative alanine racemase [Streptococcus pyogenes SSI-1] gi|134271436|emb|CAM29656.1| alanine racemase [Streptococcus pyogenes str. Manfredo] gi|209541107|gb|ACI61683.1| Alanine racemase [Streptococcus pyogenes NZ131] Length = 366 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 164/381 (43%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + I+S+ + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+GL + ++ +S + + I +H A AD+ + Sbjct: 120 ECQGLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD ++ + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108] gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108] Length = 831 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 147/370 (39%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V V +E Sbjct: 473 LEVNLGAMIANLNYYRGKLKPETKIVCMVKASAYGAGSYEIAKTLQEHRVDYLAVAVADE 532 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR A I ++ K +FD L P + S L K + P Sbjct: 533 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFGLLEALIKEAEKEGITNFPVH 591 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG + ++ + + SH +D Q+ F Sbjct: 592 VKLDTGMHRLGFAPEDMPRLIERLKGQNAVIPRSVFSHFVGSDSPQFDAFTRRQIVMFEK 651 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +S+GI P F + R G+ LYG + N + T + Sbjct: 652 ASVELQEAFAHKILRHICNSAGIERFPGAQFDMVRLGLGLYGISPIDNSILNNVS--TLK 709 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR A + V Y + L R S IA IGYADG L Sbjct: 710 TTILQIRDVPAEDTVGYSRKGHLNRPSRIAAIPIGYADGLNRHLGNGH----------AY 759 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD ++IFG + + ++ T Y++L Sbjct: 760 CLVNGCKASYVGNICMDVCMIDVTDI-DCKEGDTVEIFGDHLPITVLSDVLDTIPYEVLT 818 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 819 SVSTRVKRIY 828 >gi|28377409|ref|NP_784301.1| alanine racemase [Lactobacillus plantarum WCFS1] gi|254555592|ref|YP_003062009.1| alanine racemase [Lactobacillus plantarum JDM1] gi|300768938|ref|ZP_07078829.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179615|ref|YP_003923743.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ST-III] gi|3913026|sp|O08445|ALR_LACPL RecName: Full=Alanine racemase gi|2190422|emb|CAA70140.1| alanine racemase [Lactobacillus plantarum] gi|28270241|emb|CAD63142.1| alanine racemase [Lactobacillus plantarum WCFS1] gi|254044519|gb|ACT61312.1| alanine racemase [Lactobacillus plantarum JDM1] gi|300493459|gb|EFK28636.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045106|gb|ADN97649.1| alanine racemase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 375 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 158/381 (41%), Gaps = 29/381 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ +DL A+K N + M AVVK N YG G ++A A AG F V Sbjct: 7 HRHTQVTVDLQAIKTNISNEMAQKDELTELWAVVKANGYGHGIIQVAQAAKEAGATGFCV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++E + LR I VL P ++ + ++ + + LT + +++ Sbjct: 67 AILDEALALRAAGFAEPILVLGITEPEYAPLVAEKDISLAVGTQDWLTTAAAILAANQVT 126 Query: 121 -SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLIISHLACADDPSSHVNSV 177 L +DTG R+G E L + + I +H A AD + Sbjct: 127 TPLHVHLALDTGMGRIGFQTPEELATAVTTLRQPQSPFDFEGIFTHFATADQADDTYFTH 186 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QL ++ LI+ + + +S+ L + + R G++LYG +++ +P+ Sbjct: 187 QLNNWKHLIAVVDELPRYVHVSNSATSLWHQACNGNMVRFGVALYGLNPSGRELSAPYPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ AR+ +++ G+ VSYG +D I IGYADGY L G Sbjct: 247 QPALSLTARLTFVKRLARGKSVSYGATYTAAQDEWIGTVPIGYADGYERRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G I+G++ MD M + + VG + + G D I L D+A Sbjct: 301 ------HVLVDGEFCEIVGRVCMDQLMVRLPH--EVPVGAKVTLVGTDGARTISLQDIAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT +Y++ + R + Y Sbjct: 353 YCGTIHYEIACGLAPRVPRVY 373 >gi|149192465|ref|ZP_01870656.1| alanine racemase [Vibrio shilonii AK1] gi|148833698|gb|EDL50744.1| alanine racemase [Vibrio shilonii AK1] Length = 347 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 154/348 (44%), Gaps = 18/348 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + I+L AL +N + + N++ AVVK N YG G IA G F Sbjct: 1 MSYMKAATAHINLDALAHNLACIKQKAPNSKVMAVVKANGYGHGLRHIAKNAT--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +EE ++LR I +L G + + + TN I + + + Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSPNDLPVLVTNNIQTVVHCYEQLDALEQAELET 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VD+G +RLG+ ++ +F + + +SH CAD+ + + Q+ Sbjct: 119 PVVVWLKVDSGMHRLGVREEQYQEFVERLHRCDNVAKPLRYMSHFGCADELDNTMTQQQI 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 E F +L G E S+A+S+G+L RPGI +YG + +K + V+ Sbjct: 179 ELFLSLTEGCNG-ERSMAASAGLLEWQQSRLDWVRPGIIMYGVSPFGDKTAADMGFKPVM 237 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ +I +R GE V YG RD+ + V AIGY DGYP T Sbjct: 238 TLKSHLIAVRDVKKGESVGYGATWTSQRDTKVGVIAIGYGDGYPRTAPN----------- 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 G + G VPI G+++MDM D+ +VGD ++G ++ + Sbjct: 287 GTPVLVNGRKVPIAGRVSMDMLTVDLGPDALDQVGDEAILWGEELPSE 334 >gi|15675637|ref|NP_269811.1| alanine racemase [Streptococcus pyogenes M1 GAS] gi|71911345|ref|YP_282895.1| alanine racemase [Streptococcus pyogenes MGAS5005] gi|20137226|sp|Q99Y98|ALR_STRP1 RecName: Full=Alanine racemase gi|13622847|gb|AAK34532.1| putative alanine racemase [Streptococcus pyogenes M1 GAS] gi|71854127|gb|AAZ52150.1| alanine racemase [Streptococcus pyogenes MGAS5005] Length = 366 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 163/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + I+S+ + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+GL + ++ +S + + I +H A AD+ + Sbjct: 120 ECQGLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD + + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|119358056|ref|YP_912700.1| alanine racemase [Chlorobium phaeobacteroides DSM 266] gi|119355405|gb|ABL66276.1| alanine racemase [Chlorobium phaeobacteroides DSM 266] Length = 376 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 157/379 (41%), Gaps = 26/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 I L LK+N + G R +VK NAYG +K+A L G+ DF V Sbjct: 9 NMAEASISLGHLKHNIREIKQCVGTGVRIMGIVKANAYGHNMQKVAETLEAEGISDFGVA 68 Query: 64 SVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 ++ E ++L+ A I Q + + + + + Sbjct: 69 NIHEAIELKTGGALKKPANILSFSSPIIQQIEYYLHHQIDMTLCDANIMKAASAIAEKHN 128 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG RLGL +AL+ + + +L + +H A+ + Q Sbjct: 129 KKIGVHLKVDTGMGRLGLPPLQALELLRETERQPGLELKGVYTHF--AESANDDFTRRQF 186 Query: 180 ERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPM 232 + F+T+ Y K + ASS +L P + RPGI LYG + S + Sbjct: 187 KEFKTMTDAYETASGKTLCKHAASSGTLLNNPEMRLDMVRPGILLYGYKPYPALPSSITV 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ EA++I I+ +SY K R IA + GYADGY LS + Sbjct: 247 RPVMQFEAKVIFIKTVAKDATISYNRTWKAARPVKIATISAGYADGYHRALSNHAT---- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASG 351 FI G +G +TMD M D+ +++GD +FG L+++A + G Sbjct: 303 -------VFINGKSFQQVGTVTMDQFMVDLGTESDVKIGDRAILFGWEGPCLEELAGSIG 355 Query: 352 TTNYDLLVRIGTRYAKFYT 370 + +Y+LL + +R + +T Sbjct: 356 SISYELLCSVSSRVKRVFT 374 >gi|296315218|ref|ZP_06865159.1| alanine racemase [Neisseria polysaccharea ATCC 43768] gi|296837855|gb|EFH21793.1| alanine racemase [Neisseria polysaccharea ATCC 43768] Length = 352 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 87/365 (23%), Positives = 156/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++I L L++N+ + + G + AV+K +AYG G + A AL + F V + Sbjct: 2 RPLNVQIRLGNLRHNYQILKEMHGG-KLLAVLKADAYGHGAVRCAFALADL-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR I +L G+ E + + Sbjct: 60 IDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQWQLEALLSRHWKKPVKV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH +CAD+P S + +Q+E F Sbjct: 120 WLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFSCADEPESGMTEIQMEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ RI Sbjct: 180 GTKGLEGEE-SLANSAAILNIPEARRDWGRAGLALYGISPFGGSDDRLKPVMRLSTRIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRA-----------PTNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM ++ D+ +G ++++G + ++ VA A+GT Y+L+ I R Sbjct: 288 KLTRVIGRVSMDMMTIEL-DASQEGLGHEVELWGDTVNINTVAEAAGTIPYELMCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|315613615|ref|ZP_07888522.1| alanine racemase [Streptococcus sanguinis ATCC 49296] gi|315314306|gb|EFU62351.1| alanine racemase [Streptococcus sanguinis ATCC 49296] Length = 367 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIYLGAIRKNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR ++ +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGISKKLLILGVSEIEAVSLAKEYDITLTVAGLEWIQALLVRETDLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + ++ I +H A AD+ S + QLERF Sbjct: 125 SVHLKIDSGMGRIGFRDSSEAEQAQALLQQHGARVEGIFTHFATADEESDSYFNTQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + +++ K + ++S+ L F R G ++YG +N + + ++ Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLNLPYDLTPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGTCMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGSNGDKEITATQVAAYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|88856968|ref|ZP_01131618.1| alanine racemase [marine actinobacterium PHSC20C1] gi|88813785|gb|EAR23657.1| alanine racemase [marine actinobacterium PHSC20C1] Length = 366 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 27/373 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 I A+ +N ++ AL A AVVK N YG G + A A + G V + E Sbjct: 7 ATISTGAISHNIQTLRALVAPALVMAVVKANGYGHGAVESARAALDGGADWLGVADITEA 66 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR A + + ISS+ Q +++ + + L+V Sbjct: 67 LALRAAGIDAPLLAWLHQPGAGFSEAVHARVDLGISSIAQ---LTEVAAASGTACVHLKV 123 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-- 186 DTG +R G L E F + +L + + + + ++ Q++ F T + Sbjct: 124 DTGLHRNGAFLDEWQQFFEAAVAHELAGRIHVRGIWSHLANAGAEHDAKQIDLFSTAVAM 183 Query: 187 SHYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEA 240 +H G+ L + + P+ F L R GIS YG + + +T A Sbjct: 184 AHSVGLRPELRHLAASEGAIKHPDARFDLVRLGISAYGLAPADDVDVAALGLVPAMTLSA 243 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I +++ +AG VSYG D+ + + +GYADG P + G Sbjct: 244 PVISVKRVVAGSGVSYGYDFYCENDTTLVLVPLGYADGVPRHATNR-----------GPV 292 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 I G I G++ MD + ++ D+ + VGD +FG DD A A+G+ NY+ Sbjct: 293 SINGARGQIAGRVAMDQIVVNMGDTP-VAVGDRAVLFGDSSTGVPSADDWAEAAGSINYE 351 Query: 357 LLVRIGTRYAKFY 369 ++ RIG R + Y Sbjct: 352 IVTRIGQRVVRRY 364 >gi|121997449|ref|YP_001002236.1| alanine racemase [Halorhodospira halophila SL1] gi|254802365|sp|A1WUS2|ALR_HALHL RecName: Full=Alanine racemase gi|121588854|gb|ABM61434.1| alanine racemase [Halorhodospira halophila SL1] Length = 364 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 97/368 (26%), Positives = 157/368 (42%), Gaps = 17/368 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R ++L+AL+ N + A + R AV+K + YG G +A AL + F VT Sbjct: 2 SRAARATVNLSALRANLRTARAAAPQQRIMAVIKSDGYGHGLAVVAGALTGH-AEAFAVT 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E LR + RI +L G + + ++ Sbjct: 61 DADEAEALRAAGFRERIVLLQGPFAVDDLARAAAADLELVIHAHWQVEALAQAQLASPVT 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G +RLG +E D + + ++HLACADD QLE F Sbjct: 121 VWLKVDSGMHRLGFPPEEVQDAWRRLTEASCVRADIGFLTHLACADDRDDPATERQLETF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAE 239 + G S A+S+G+L P H+ RPGI LYG + ++ + +Q + + Sbjct: 181 QAACDGLPG-PRSAANSAGVLGWPASHYDWVRPGIMLYGASPFVDGRDEQPALQPAMAFQ 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 R++ +R AG+ V YG + V +IGY DGYP G Sbjct: 240 GRVVAVRHLRAGDPVGYGATWSCPEAMPVGVVSIGYGDGYPRHA-----------PSGTP 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+I+MDM D+ + GD ++G ++ ++VA A GT Y+L Sbjct: 289 VEVAGQRTRLVGRISMDMLAVDLRGLDPVAEGDPAILWGGAVRAEEVAGACGTIAYELFC 348 Query: 360 RIGTRYAK 367 R+ R + Sbjct: 349 RMPPRVRR 356 >gi|225620639|ref|YP_002721897.1| alanine racemase [Brachyspira hyodysenteriae WA1] gi|225215459|gb|ACN84193.1| alanine racemase [Brachyspira hyodysenteriae WA1] Length = 366 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 101/377 (26%), Positives = 179/377 (47%), Gaps = 26/377 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + +IDL+AL N + ++ + + +VK NAYG G +I+ A G V Sbjct: 2 SNYTIAEIDLSALNKNMQIIKSIIKDVKLLNIVKANAYGHGLIEISKASEKFGADALGVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122 +VEEG+K+R + I VL+ + ++ NL P+IS+ L +Y K G + Sbjct: 62 NVEEGIKIREAGVKLPILVLFQHFKDESDLVCKYNLSPIISNDECLEYYDKFLKKNGGNL 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQL 179 ++VDTG NR+G ++ + + + I +H A +D + Q+ Sbjct: 122 NLYIKVDTGLNRMGAKPEDVVPLAKKVLSYSTLNIEGINTHYAASDMQDDYSVSFTNKQI 181 Query: 180 ERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + F +++ + +S+ I+ N +F + R GI LYG D ++ Sbjct: 182 KVFNDVLNDLNENGIKIKNAHTSNSAAIISYKNTYFDMVRAGIILYGYNDDF---LGIKP 238 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +++ ++ ++L+R GE +SYG +D+ +AV IGYADG P LS Sbjct: 239 ILSLKSHVVLVRTIKKGESISYGMTWTADKDTRVAVIPIGYADGVPRKLSN--------- 289 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGT 352 + I G P+ G+I MD + +I + S+++GD + IFG D + D +A + Sbjct: 290 --NWEVKINGKYYPLRGRICMDSIIAEIGND-SVKIGDEVLIFGNDEKLNADTLAARIDS 346 Query: 353 TNYDLLVRIGTRYAKFY 369 ++++LV IG R + Y Sbjct: 347 ISHEVLVNIGERVKRVY 363 >gi|307946726|ref|ZP_07662061.1| alanine racemase [Roseibium sp. TrichSKD4] gi|307770390|gb|EFO29616.1| alanine racemase [Roseibium sp. TrichSKD4] Length = 400 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 143/366 (39%), Positives = 201/366 (54%), Gaps = 10/366 (2%) Query: 8 RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL IDL A+ NW + LS A AA VK +AYG G + + ALY+ G + FFV Sbjct: 37 RLTIDLKAITANWTILKNKLSDRAECAATVKADAYGTGLTQASKALYDDGCRTFFVALPV 96 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E +KL P A I+VL G+ PG K + + + PV++S + + + G HP A Sbjct: 97 EALKLCRGMPDATIYVLDGLFPGTAKTLAENGIRPVLASTDEVQEWAAFCRETGQHHPAA 156 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L VDTG +RLGLS E + N +++ SLI+SHLAC DP +NS QL+RF+ L Sbjct: 157 LHVDTGIHRLGLSAAEFEEVMLNGDIREVFTPSLIMSHLACGADPEHPMNSEQLKRFKNL 216 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 S Y I SLA+S+G+ LG +YHF L RPGISLYGG +PMQ V EARI++ Sbjct: 217 TSAYPDIPKSLANSAGVFLGEDYHFDLVRPGISLYGGKALDTMPNPMQPAVKVEARIMMA 276 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G+ + YG + RD +AV A GYADG D + G I+G+ Sbjct: 277 RSVPQGDTIGYGAMQTARRDLRVAVVAAGYADGMMRRAGSTD------IAPGAYAMIEGH 330 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 P+LG+++MDM D+TD G ++++ GP + D+A + T +Y+ L +G Sbjct: 331 KAPLLGRVSMDMITLDVTDISPHLTRRGAFVEMMGPQLAASDLAAYADTIDYEYLTNLGR 390 Query: 364 RYAKFY 369 R+ + Y Sbjct: 391 RFLRRY 396 >gi|157157280|ref|YP_001462440.1| alanine racemase [Escherichia coli E24377A] gi|193066540|ref|ZP_03047582.1| alanine racemase [Escherichia coli E22] gi|193071186|ref|ZP_03052109.1| alanine racemase [Escherichia coli E110019] gi|194425883|ref|ZP_03058439.1| alanine racemase [Escherichia coli B171] gi|194434909|ref|ZP_03067154.1| alanine racemase [Shigella dysenteriae 1012] gi|209918429|ref|YP_002292513.1| alanine racemase [Escherichia coli SE11] gi|218694704|ref|YP_002402371.1| alanine racemase [Escherichia coli 55989] gi|218700229|ref|YP_002407858.1| alanine racemase [Escherichia coli IAI39] gi|218704705|ref|YP_002412224.1| alanine racemase [Escherichia coli UMN026] gi|256018560|ref|ZP_05432425.1| alanine racemase [Shigella sp. D9] gi|260843482|ref|YP_003221260.1| alanine racemase 2, PLP-binding [Escherichia coli O103:H2 str. 12009] gi|260854851|ref|YP_003228742.1| alanine racemase 2, PLP-binding [Escherichia coli O26:H11 str. 11368] gi|293404725|ref|ZP_06648717.1| alr [Escherichia coli FVEC1412] gi|298380368|ref|ZP_06989967.1| alr [Escherichia coli FVEC1302] gi|300816877|ref|ZP_07097097.1| alanine racemase [Escherichia coli MS 107-1] gi|300821043|ref|ZP_07101192.1| alanine racemase [Escherichia coli MS 119-7] gi|300896564|ref|ZP_07115085.1| alanine racemase [Escherichia coli MS 198-1] gi|300906907|ref|ZP_07124581.1| alanine racemase [Escherichia coli MS 84-1] gi|300920384|ref|ZP_07136819.1| alanine racemase [Escherichia coli MS 115-1] gi|300921848|ref|ZP_07138005.1| alanine racemase [Escherichia coli MS 182-1] gi|301305555|ref|ZP_07211646.1| alanine racemase [Escherichia coli MS 124-1] gi|301327101|ref|ZP_07220381.1| alanine racemase [Escherichia coli MS 78-1] gi|307310056|ref|ZP_07589706.1| alanine racemase [Escherichia coli W] gi|331662583|ref|ZP_08363506.1| alanine racemase [Escherichia coli TA143] gi|331667571|ref|ZP_08368435.1| alanine racemase [Escherichia coli TA271] gi|331676966|ref|ZP_08377662.1| alanine racemase [Escherichia coli H591] gi|331682674|ref|ZP_08383293.1| alanine racemase [Escherichia coli H299] gi|332279622|ref|ZP_08392035.1| alanine racemase [Shigella sp. D9] gi|157079310|gb|ABV19018.1| alanine racemase [Escherichia coli E24377A] gi|192925819|gb|EDV80471.1| alanine racemase [Escherichia coli E22] gi|192955518|gb|EDV85998.1| alanine racemase [Escherichia coli E110019] gi|194415938|gb|EDX32204.1| alanine racemase [Escherichia coli B171] gi|194416842|gb|EDX32966.1| alanine racemase [Shigella dysenteriae 1012] gi|209911688|dbj|BAG76762.1| alanine racemase [Escherichia coli SE11] gi|218351436|emb|CAU97144.1| alanine racemase 2, PLP-binding [Escherichia coli 55989] gi|218370215|emb|CAR18011.1| alanine racemase 2, PLP-binding [Escherichia coli IAI39] gi|218431802|emb|CAR12687.1| alanine racemase 2, PLP-binding [Escherichia coli UMN026] gi|257753500|dbj|BAI25002.1| alanine racemase 2, PLP-binding [Escherichia coli O26:H11 str. 11368] gi|257758629|dbj|BAI30126.1| alanine racemase 2, PLP-binding [Escherichia coli O103:H2 str. 12009] gi|291426933|gb|EFE99959.1| alr [Escherichia coli FVEC1412] gi|298277810|gb|EFI19324.1| alr [Escherichia coli FVEC1302] gi|300359593|gb|EFJ75463.1| alanine racemase [Escherichia coli MS 198-1] gi|300401340|gb|EFJ84878.1| alanine racemase [Escherichia coli MS 84-1] gi|300412600|gb|EFJ95910.1| alanine racemase [Escherichia coli MS 115-1] gi|300421774|gb|EFK05085.1| alanine racemase [Escherichia coli MS 182-1] gi|300526342|gb|EFK47411.1| alanine racemase [Escherichia coli MS 119-7] gi|300530651|gb|EFK51713.1| alanine racemase [Escherichia coli MS 107-1] gi|300839144|gb|EFK66904.1| alanine racemase [Escherichia coli MS 124-1] gi|300846279|gb|EFK74039.1| alanine racemase [Escherichia coli MS 78-1] gi|306909774|gb|EFN40268.1| alanine racemase [Escherichia coli W] gi|315060440|gb|ADT74767.1| Alanine racemase [Escherichia coli W] gi|315254855|gb|EFU34823.1| alanine racemase [Escherichia coli MS 85-1] gi|320181803|gb|EFW56713.1| Alanine racemase, catabolic [Shigella boydii ATCC 9905] gi|320199227|gb|EFW73818.1| Alanine racemase, catabolic [Escherichia coli EC4100B] gi|323153142|gb|EFZ39406.1| alanine racemase [Escherichia coli EPECa14] gi|323162287|gb|EFZ48145.1| alanine racemase [Escherichia coli E128010] gi|323172462|gb|EFZ58099.1| alanine racemase [Escherichia coli LT-68] gi|323185649|gb|EFZ71010.1| alanine racemase [Escherichia coli 1357] gi|323378997|gb|ADX51265.1| alanine racemase [Escherichia coli KO11] gi|323947528|gb|EGB43532.1| alanine racemase [Escherichia coli H120] gi|324017565|gb|EGB86784.1| alanine racemase [Escherichia coli MS 117-3] gi|324117262|gb|EGC11169.1| alanine racemase [Escherichia coli E1167] gi|331061005|gb|EGI32969.1| alanine racemase [Escherichia coli TA143] gi|331065156|gb|EGI37051.1| alanine racemase [Escherichia coli TA271] gi|331075655|gb|EGI46953.1| alanine racemase [Escherichia coli H591] gi|331080305|gb|EGI51484.1| alanine racemase [Escherichia coli H299] gi|332092228|gb|EGI97305.1| alanine racemase [Shigella boydii 5216-82] gi|332097916|gb|EGJ02889.1| alanine racemase [Shigella dysenteriae 155-74] gi|332101974|gb|EGJ05320.1| alanine racemase [Shigella sp. D9] Length = 356 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|194364223|ref|YP_002026833.1| alanine racemase [Stenotrophomonas maltophilia R551-3] gi|194347027|gb|ACF50150.1| alanine racemase [Stenotrophomonas maltophilia R551-3] Length = 355 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 163/369 (44%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L G + A++K +AYG G + A AL F V + Sbjct: 2 RPARALIDLGALRSNYRLAREL-GGGKALAIIKADAYGHGAVRCAQAL-EGEADGFGVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR A I +L GI ++ + + + S QL + Sbjct: 60 IEEALELRQAGIGAPILLLEGIFEASDMALVAEHDFWFAVGSPWQLEALAAF-DSPRPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +RLGL + + ++++HLA AD+ S Q F Sbjct: 119 VWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERVVLMTHLARADELDSERTHEQAATFA 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240 I +G E S+ +S +L P+ RPG+ LYG + + ++ V+T ++ Sbjct: 179 RAIDGLEG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTDLTARLRPVMTMQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I R +GE V YG + + + V A+GYADGYP G Sbjct: 238 KVIAERWIESGEPVGYGARFVSKARTRVGVVALGYADGYPQFAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G ++G+++MDM D+T VG ++++G L ++A G + Y L Sbjct: 287 LIDGQPGALIGRVSMDMLTVDLTAHPQAGVGSVVELWGNAPTLSELAPRCGVSAYQLPCG 346 Query: 361 IGTRYAKFY 369 + R A+ Y Sbjct: 347 V-KRVARVY 354 >gi|327394099|dbj|BAK11521.1| alanine racemase, catabolic DadB [Pantoea ananatis AJ13355] Length = 356 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 161/367 (43%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ID AL++N + + +R +VVK NAYG G ++ +L F + Sbjct: 2 SRPIVATIDQQALRHNLAIVRRAAPTSRVWSVVKANAYGHGIARVWESLSA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G + + D + + Sbjct: 60 NMEEAILLREQGWKKPILLLEGFFHPDDLALIDRYRLTTSVHSNWQIHALANATLSAPVD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++ H + +++H A A++P V ++ Sbjct: 120 LYLKINSGMNRLGFRPEQVNGIWHKLRALENVGDITLMAHFADAENPDGIVEPLKRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P H+ RPGI LYG + N S ++ V+T Sbjct: 177 AQATEGLDSPVSLSNSACTLWHPEAHYDWVRPGIILYGASPSGNWQDIASSGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +++ AG+ V YG + T+ I V A GYADGYP G Sbjct: 237 SEIIGVQQLQAGDGVGYGYRYHATQPQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G M ++G ++MDM D+T +G ++++G ++K+D VA A+GT Y+L+ Sbjct: 286 VAVDGIMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGENVKIDQVAKAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|167770383|ref|ZP_02442436.1| hypothetical protein ANACOL_01726 [Anaerotruncus colihominis DSM 17241] gi|167667390|gb|EDS11520.1| hypothetical protein ANACOL_01726 [Anaerotruncus colihominis DSM 17241] Length = 405 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 33/391 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M +IDL + +N + L+ RT AVVK +AYG G ++ AL G Sbjct: 1 MDYLRRTWAEIDLDRIVHNHRIIRQRLTPGCRTMAVVKADAYGHGDGYVSRALQQDGADW 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V+++ E V LR + +L P ++ + +L + S SK + Sbjct: 61 FAVSNINEAVSLRRQGVVRPVLILGYTPPEMAGLLVEQSLTQTVYSGEYARALSKESAAR 120 Query: 120 V-SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-----QLSLIISHLACADDPSSH 173 + +++DTG +R+G Q+ + ++ + +H +CAD+ S+ Sbjct: 121 KLTVDCHIKIDTGMSRIGFFAQQGHAAQAANEIARVCALPGLSCTGAFTHFSCADEYSAD 180 Query: 174 ---VNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225 Q E F + + + +S+ L P YH + RPG+ LYG + Sbjct: 181 SRAFTHRQFEVFMETLGLLKQAGVEFELRHCCNSAATLAYPEYHLDMVRPGVVLYGLSPS 240 Query: 226 INKSHPMQ--TVVTAEARIILIRKALAGELVSYGGQKKLTR-DSLIAVAAIGYADGYPLT 282 + ++ + +++ VSYG + + IA AIGYADGY Sbjct: 241 PECAGMAALLPAMSLYTTVTMVKTLDQHAAVSYGRRYVTPKGGRRIASIAIGYADGYRRN 300 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340 + G+ I+G PI G + MD M D+ ++ GD + + G + Sbjct: 301 FTN-----------KGRVIIRGQYAPITGAVCMDQLMVDVNAIDGVQSGDVVTLVGENGG 349 Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I LDD A +GT NY+ IG R + Y Sbjct: 350 AAITLDDFAALNGTINYEECCLIGRRVPRVY 380 >gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 838 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V V +E Sbjct: 480 LEVNLGAMIANLNYYRGKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 539 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR A I ++ K +FD L P + S L K + P Sbjct: 540 GSELRKAGITANIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 598 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184 +++DTG +RLG + ++ + + SHL +D Q+E F Sbjct: 599 IKLDTGMHRLGFAPEDMPRLIERLKGQNAVIARSVFSHLVGSDSQQFDSFTRRQIEMFEK 658 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + +S+GI P F + R GI LYG N M V T + Sbjct: 659 ASMELQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVNPIDN--SIMNNVSTLK 716 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + LTR S IA IGYADG L Sbjct: 717 TTILQIRDVPEEDTVGYSRKGHLTRPSRIAALPIGYADGLNRHLGNGH----------AY 766 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD ++IFG + + ++ T Y++L Sbjct: 767 CLVNGQRAAYVGNICMDVCMIDVTDI-DCKEGDSVEIFGDHLPITVLSDVLETIPYEVLT 825 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 826 SVSTRVKRIY 835 >gi|78185553|ref|YP_377987.1| alanine racemase [Synechococcus sp. CC9902] gi|78169847|gb|ABB26944.1| alanine racemase [Synechococcus sp. CC9902] Length = 375 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 107/380 (28%), Positives = 179/380 (47%), Gaps = 24/380 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + + +++ A+K N ++ L+ AVVK + YG G +A A + G Sbjct: 5 NPRQRAWVEVSPAAIKANASALCQHLTPGTELMAVVKADGYGHGAVSVANAALDGGAASL 64 Query: 61 FVTSVEEGVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSC 118 V +++EG++LR +A I + P + + L+P +SS+ ++ Sbjct: 65 GVATLQEGLELRRAGLKAPILLLSNLCDPEDLRTCLEWQLMPTLSSLADAKLCHALAEDS 124 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G L++DTG +RLG +L + + T + K +L I SHLACADD S+ V Q Sbjct: 125 GRRFKVQLKIDTGMSRLGCALDDGAETTQAIQHLKNLELKGIYSHLACADDRSTTVTQQQ 184 Query: 179 LERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232 +RF+++I G+ LA+S+G LL PN H+ L R G++LYG + P+ Sbjct: 185 RQRFQSVIETLPQRGVGLCRHLANSAGTLLEPNLHYDLVRVGLALYGHAPADHLRDIVPL 244 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ ++ A++ LIR+ AG VSYG Q +AV AIGYADG +LSG Sbjct: 245 RSALSVRAKVTLIREIKAGTGVSYGHQYISPNARRLAVVAIGYADGVLRSLSGQID---- 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVAL 348 + +P +G ITMD + D TD+ + G + + G D ++ + Sbjct: 301 -------VLHRDKRLPQVGAITMDQLLIDATDATDLHPGSIVTLLGRDQSVEITPQSWSD 353 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 + +++L R + Sbjct: 354 RCQSIPWEILCGFKHRLPRV 373 >gi|325525874|gb|EGD03590.1| alanine racemase [Burkholderia sp. TJI49] Length = 344 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 151/358 (42%), Gaps = 20/358 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + +G ++ AVVK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRYAGPSKVWAVVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTTVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD+ + QL F Sbjct: 121 QLKMNSGMNRLGYAPEKYRAAWERARACPGIGQITLMTHFSDADNERG--VAEQLATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 ++ G SLA+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAANIAGAR-SLANSAAVLWHPDTHFDWVRPGIVLYGASPSGLSSDIADTGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ + YG I V A GYADGYP G Sbjct: 238 ELIAVQTIGKGQAIGYGSTFSAQAPMRIGVVACGYADGYPR-----------VAPEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G I+G+++MDM D+T VG ++++G + +DDVA GT Y+L+ Sbjct: 287 IVDGIRTRIVGRVSMDMITVDLTPCPQAGVGARVELWGNALSIDDVARHCGTIGYELM 344 >gi|260433528|ref|ZP_05787499.1| alanine racemase [Silicibacter lacuscaerulensis ITI-1157] gi|260417356|gb|EEX10615.1| alanine racemase [Silicibacter lacuscaerulensis ITI-1157] Length = 344 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 135/364 (37%), Positives = 190/364 (52%), Gaps = 26/364 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL I+L AL NNW +++A + + T AVVK +AYGLG +A AL GV+ FFV E Sbjct: 4 ARLTINLHALVNNWRALDAKT-DVETGAVVKADAYGLGAGPVASALAEEGVRKFFVAVTE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG +R P IFV G G ++ D +L+P+++S Q + + + HP+ Sbjct: 63 EGAAVRRAIGPGPLIFVFSGHMEGDADLLRDHDLVPLLNSPEQ---FQRHIQALPVHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQ+DTG NRLGL + + + L++SHLACAD+P +N QLE FR + Sbjct: 120 LQLDTGMNRLGLEPADWSALRNRAEAL---NPVLVMSHLACADEPDHPMNRQQLEAFRGM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 SLA++ G+LLGP YHF L RPGI LYGG VVT + +I + Sbjct: 177 TEGVSA-PRSLAATGGMLLGPEYHFDLCRPGIGLYGGLPFTAAK----PVVTVDLPVIQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG K R S IA A GYADG + G G F Sbjct: 232 RDLAVGESVGYGNTWKARRPSRIATVAAGYADGLHRAIGG-----------GIDAFAGNL 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+I+MD+ D+TD + ++I +DD+A A+GT Y++L +G+RY Sbjct: 281 PCPVVGRISMDLITIDVTDLP--HTPERLRILNGHQTVDDLAEAAGTIGYEILTSLGSRY 338 Query: 366 AKFY 369 ++ Y Sbjct: 339 SRGY 342 >gi|306824745|ref|ZP_07458089.1| alanine racemase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432956|gb|EFM35928.1| alanine racemase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 367 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 157/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M + N AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIRLGAIRQNIQQMGSHIPNGTLKFAVVKANAYGHGAVAVATAIQDI-VDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGINKKILILGVSELEAVSLAKEYDITLTVAGLEWIQALLDKEADLTDL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G D + + ++ I +H A AD+ S + QLE F Sbjct: 125 TVHLKIDSGMGRIGFRDASEADLVQDLLKQHGARVEGIFTHFATADEESDTYFNQQLECF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + +++ K + ++S+ L F R G S+YG +N + + +T Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDSMYGLNPSGEVLNLPYDLTPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGSNGDQEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|49484296|ref|YP_041520.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426208|ref|ZP_05602623.1| alanine racemase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428867|ref|ZP_05605261.1| alanine racemase [Staphylococcus aureus subsp. aureus 65-1322] gi|257434187|ref|ZP_05610537.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus E1410] gi|257437100|ref|ZP_05613140.1| alanine racemase [Staphylococcus aureus subsp. aureus M876] gi|258422928|ref|ZP_05685828.1| alanine racemase [Staphylococcus aureus A9635] gi|282904737|ref|ZP_06312611.1| alanine racemase [Staphylococcus aureus subsp. aureus C160] gi|282906415|ref|ZP_06314266.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909383|ref|ZP_06317198.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911637|ref|ZP_06319436.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914916|ref|ZP_06322696.1| alanine racemase [Staphylococcus aureus subsp. aureus M899] gi|282920247|ref|ZP_06327971.1| alanine racemase [Staphylococcus aureus subsp. aureus C427] gi|282925459|ref|ZP_06333113.1| alanine racemase [Staphylococcus aureus subsp. aureus C101] gi|283958850|ref|ZP_06376295.1| alanine racemase [Staphylococcus aureus subsp. aureus A017934/97] gi|293508989|ref|ZP_06667776.1| alanine racemase [Staphylococcus aureus subsp. aureus 58-424] gi|293510901|ref|ZP_06669600.1| alanine racemase [Staphylococcus aureus subsp. aureus M809] gi|293547502|ref|ZP_06672177.1| alanine racemase [Staphylococcus aureus subsp. aureus M1015] gi|295428657|ref|ZP_06821283.1| alanine racemase [Staphylococcus aureus subsp. aureus EMRSA16] gi|60389625|sp|Q6GF03|ALR1_STAAR RecName: Full=Alanine racemase 1 gi|49242425|emb|CAG41139.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252] gi|257270913|gb|EEV03086.1| alanine racemase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274209|gb|EEV05726.1| alanine racemase [Staphylococcus aureus subsp. aureus 65-1322] gi|257280826|gb|EEV10971.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus E1410] gi|257283493|gb|EEV13620.1| alanine racemase [Staphylococcus aureus subsp. aureus M876] gi|257846952|gb|EEV70966.1| alanine racemase [Staphylococcus aureus A9635] gi|282312860|gb|EFB43261.1| alanine racemase [Staphylococcus aureus subsp. aureus C101] gi|282316107|gb|EFB46488.1| alanine racemase [Staphylococcus aureus subsp. aureus C427] gi|282321119|gb|EFB51450.1| alanine racemase [Staphylococcus aureus subsp. aureus M899] gi|282324402|gb|EFB54715.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326653|gb|EFB56951.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330365|gb|EFB59883.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594770|gb|EFB99747.1| alanine racemase [Staphylococcus aureus subsp. aureus C160] gi|283789568|gb|EFC28391.1| alanine racemase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919622|gb|EFD96695.1| alanine racemase [Staphylococcus aureus subsp. aureus M1015] gi|291094693|gb|EFE24965.1| alanine racemase [Staphylococcus aureus subsp. aureus 58-424] gi|291466186|gb|EFF08713.1| alanine racemase [Staphylococcus aureus subsp. aureus M809] gi|295127327|gb|EFG56967.1| alanine racemase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193230|gb|EFU23628.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS00] Length = 382 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYHRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|317054962|ref|YP_004103429.1| alanine racemase [Ruminococcus albus 7] gi|315447231|gb|ADU20795.1| alanine racemase [Ruminococcus albus 7] Length = 373 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 153/382 (40%), Gaps = 27/382 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M+ +IDL+A+ N L + VVK + YG E I P L GV+ Sbjct: 1 MNFLRRCWAEIDLSAVDYNVCEYKKLLPQDTELMCVVKASCYGHSDELIVPRLQQVHGVR 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V+++ EG++LR I +L P + ++I + + S + Sbjct: 61 YFAVSNILEGIRLREIGINGDILILGYTPPECAAELVKYDIIQACTELCYAQELS--ANA 118 Query: 119 GVSHPYALQVDTGFNRLGLS--LQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSH 173 + VDTG R+G+ +E D L I +H + AD D Sbjct: 119 NGTVRLHGAVDTGMTRIGVHGTAEEQADELAKVSALPNISLEGIFTHFSSADGIDDADEK 178 Query: 174 VNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 +Q ERF + + A + +S+G G L R GI LYG K Sbjct: 179 YTQMQSERFFRVRDLLKEKGIRLKHAHIKNSAGGAYGYGDESTLARLGIILYGLYPDPAK 238 Query: 229 SHPM--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 S P + V+T +A + ++ G VSYG R +A GYADGYP LS Sbjct: 239 SLPFVPKPVMTLKAVVSQVKWIDEGTAVSYGRTFVSDRRMKLATVTAGYADGYPRALSN- 297 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 G+ I+G I G++ MD M D+TD GD + + +I D + Sbjct: 298 ----------KGEVIIRGKKCRICGRVCMDQFMCDVTDIPDAAPGDEVILMNAEINADVI 347 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A +GT Y++ I +R + Sbjct: 348 AALTGTIGYEITCDITSRVPRV 369 >gi|107026636|ref|YP_624147.1| alanine racemase [Burkholderia cenocepacia AU 1054] gi|116692174|ref|YP_837707.1| alanine racemase [Burkholderia cenocepacia HI2424] gi|105896010|gb|ABF79174.1| alanine racemase [Burkholderia cenocepacia AU 1054] gi|116650174|gb|ABK10814.1| alanine racemase [Burkholderia cenocepacia HI2424] Length = 373 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AV+K NAYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L G+ + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGVFEPADVELADHHRLTVAVHCDEQLDLLIAAKPRQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ QL++F Sbjct: 121 QLKMNSGMNRLGYRPAAFRAAWERAASAPSIGKITLMMHFANADEGE---VDWQLDQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S+++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 TTAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLSS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSRVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|319785910|ref|YP_004145385.1| alanine racemase [Pseudoxanthomonas suwonensis 11-1] gi|317464422|gb|ADV26154.1| alanine racemase [Pseudoxanthomonas suwonensis 11-1] Length = 356 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 161/368 (43%), Gaps = 18/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ +L G R AVVK +AYG G + A AL + F V Sbjct: 2 RPARALIDLAALRHNYRLARSL-GGGRALAVVKADAYGHGAVRCAAALEHE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + + + + P + Sbjct: 60 IEEALVLRGAGIRKPILLLEGFFEASELPLLLEHDLWTVVHAPWQVEALERTVLPAPLTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R+G+ + + ++++ +SH A AD+ QL+ F Sbjct: 120 WLKLDSGMHRVGIGADDYAEAWRRLEALPHVRMAVKMSHFARADELECARTREQLDTFAA 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEAR 241 + G E S+ +S +L P RPG+ LYG + ++ V+T E++ Sbjct: 180 ATAGLPG-EVSVCNSPALLGWPQARGHWARPGLMLYGVSPFAQAHDLAAQLRPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YG + + + V A+GYADGYP G Sbjct: 239 VIAVRELPAGEPVGYGARFVTEAPTRVGVVAMGYADGYPQFAVN-----------GTPVA 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G ++G+++MDM D+TD VG ++++G + V S T++Y LL + Sbjct: 288 IDGRPGRLVGRVSMDMLTIDLTDHPQAGVGSTVELWGNQVSAAQVVANSQTSSYRLLCAV 347 Query: 362 GTRYAKFY 369 R Y Sbjct: 348 -KRVPLHY 354 >gi|237748485|ref|ZP_04578965.1| alanine racemase [Oxalobacter formigenes OXCC13] gi|229379847|gb|EEO29938.1| alanine racemase [Oxalobacter formigenes OXCC13] Length = 359 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 97/368 (26%), Positives = 157/368 (42%), Gaps = 19/368 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ID+ A+++N + + A+ VVK NAYG G E+ AL + F + Sbjct: 3 RPLVANIDIAAMQHNLSVVRSTVPRAKIWGVVKANAYGHGLERSVRALND--ADGFALIE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E + LR + I +L G E I I + + + Sbjct: 61 MESAIHLREIGWKKPILLLEGFFYAHELPILARYNIAFAVHCDEQIDMLEKSRLDLPVDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERF 182 L+++TG NRLG E + ++H A ++ QL+RF Sbjct: 121 HLKMNTGMNRLGFLPAEYSKAYERLKKIPNVREISHMTHFANSEVSGHKKMSVEEQLKRF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240 + + G+ +L++S ILL P RPG+ LYGGT K + + ++ V+T + Sbjct: 181 DSGSAGLPGVR-NLSNSGAILLHPQLRTDWVRPGVMLYGGTPGGKTAEEYGLKPVMTLSS 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I+ G+ V YG T I V A GYADGYP G Sbjct: 240 EIIQIQNINEGDSVGYGSIFTATGPMKIGVVACGYADGYPRMA-----------PEGTHV 288 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T VG + ++G ++ +D+VA A+GT Y+L+ Sbjct: 289 IVDGVKTRLVGRVSMDMITVDLTPVKDAHVGSKVTLWGNELPIDEVAEAAGTVGYELMCA 348 Query: 361 IGTRYAKF 368 + R + Sbjct: 349 LSLR-PRI 355 >gi|213962105|ref|ZP_03390369.1| alanine racemase [Capnocytophaga sputigena Capno] gi|213955111|gb|EEB66429.1| alanine racemase [Capnocytophaga sputigena Capno] Length = 369 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 154/379 (40%), Gaps = 23/379 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + E L+I+LTAL+ N H + L AVVK ++YG IA L G V Sbjct: 1 MKTEE-TTLEINLTALEKNIHYLKNRLKPTTLFLAVVKASSYGNNSVAIASHLQKKGLVN 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V EG+ LR I VL+ P I NL P + S + Sbjct: 60 YFAVAYTSEGIALRKAGITLPILVLHP-QPINFNDIVKYNLEPTLYSQRIAQLFLDYAKI 118 Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVN 175 ++P L+ +TG NRLG L E + N ++ SHLA ++D + Sbjct: 119 QQLANYPVHLKCNTGLNRLGFDLSEIEETLALLKNNTTVKVKTAYSHLAASEDMNEKEFT 178 Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q+ F + ++SGIL P F + R GI +YG + + Sbjct: 179 ENQINTFIAFQEKINKTFTHKVIYHQCNTSGILNYPQAQFDMVRCGIGMYGFANDVKLQQ 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + ++T ++ I + GE + Y + A +G+ADG Sbjct: 239 YLTPIMTLKSVISQLHTLQIGESLGYNRGYIADHITRTATIPVGHADGINRIYG------ 292 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 G FI G I+G + MDM + D+T+ S + GD + +F + +A ++ Sbjct: 293 ----KGKGFVFINGKKASIIGNVCMDMILVDVTEI-SCQEGDEVIVFDKTHTAETLAESA 347 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+L+ + R + Y Sbjct: 348 GTISYELITSMAHRIKRIY 366 >gi|116072169|ref|ZP_01469437.1| alanine racemase [Synechococcus sp. BL107] gi|116065792|gb|EAU71550.1| alanine racemase [Synechococcus sp. BL107] Length = 375 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 107/380 (28%), Positives = 179/380 (47%), Gaps = 24/380 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + + +++ A+K N ++ L+ AVVK + YG G +A A + G Sbjct: 5 NPRQRAWVEVSPAAIKANAGALCQHLTPGTELMAVVKADGYGHGAVTVANAALDGGAASL 64 Query: 61 FVTSVEEGVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSC 118 V +++EG++LR +A I + P + + L+P +SS+ ++ Sbjct: 65 GVATLQEGLELRQAGLKAPILLLSNLCDPEDLRTCLEWQLMPTLSSLADAKLCHALAEDS 124 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G L++DTG +RLG +L + + T + K L I SHLACADD + V Q Sbjct: 125 GRRFQVQLKIDTGMSRLGCALDDGAETTQAIQHLKNLDLKGIYSHLACADDRNITVTQQQ 184 Query: 179 LERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PM 232 +RF+++I G+ LA+S+G LL PN H+ L R G++LYG + S P+ Sbjct: 185 RQRFQSVIETLPQQGTGLCRHLANSAGTLLEPNLHYDLVRVGLALYGHAPADHLSDIVPL 244 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ + A++ LIR+ AG VSYG Q +AV AIGYADG +LSG Sbjct: 245 RSALAVRAKVTLIREIKAGTGVSYGHQYISPNSRRLAVVAIGYADGVLRSLSGQI----- 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVAL 348 + + +P +G ITMD + D TD+ + G + + G D ++ + + Sbjct: 300 ------QVLHRDKRLPQVGAITMDQLLIDATDAPELHPGSIVTLLGRDQNVEISPQNWSD 353 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 + +++L R + Sbjct: 354 RCQSIPWEILCGFKHRLPRV 373 >gi|225869174|ref|YP_002745122.1| alanine racemase [Streptococcus equi subsp. zooepidemicus] gi|259710074|sp|C0MEB7|ALR_STRS7 RecName: Full=Alanine racemase gi|225702450|emb|CAX00342.1| alanine racemase [Streptococcus equi subsp. zooepidemicus] Length = 366 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 161/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++DL A++ N + +T AVVK NAYG G ++ A+ + V Sbjct: 1 MISSLHRPTVARVDLEAIQANIDKIQRHLPKKVKTYAVVKANAYGHGAVAVSKAVEDQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L I + ++ L ++S+ L K Sbjct: 60 DGYCVSNLDEALELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLELAKKESV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + QL I +H A AD+ + Sbjct: 120 DFSQLHVHVKVDSGMGRIGVRSLAEANQLISILSDMGVQLDGIFTHFATADESDHAMFDK 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232 QL F+ L+ A + +S+ L F R GI +YG N P+ Sbjct: 180 QLTFFKQLVEQLDKRPALVHASNSATSLWHSETIFSAIRLGIVIYGLNPSGNSLSLPCPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+R++ +++ AG+ V YG + IGYADG+ + G Sbjct: 240 KEALSLESRLVHVKQIQAGDSVGYGASYVAAEPEYVGTLPIGYADGWTRNMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K ++G I+G+++MD +T + +G + + G I DVA Sbjct: 294 ------KVLVEGEFCDIIGRVSMDQLTIRLTKAYP--IGTKVTLIGQQGKQVITATDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 YRGTINYEVLCLLSDRIPREY 366 >gi|297589866|ref|ZP_06948506.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8] gi|297576994|gb|EFH95708.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8] gi|312437516|gb|ADQ76587.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH60] Length = 390 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 21 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 80 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 81 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 140 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q RF+ +++ Sbjct: 141 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYHRFKDMVN 199 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 200 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 259 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 260 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 307 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 308 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 365 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 366 CNLSRRLPRIY 376 >gi|209546891|ref|YP_002278809.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538135|gb|ACI58069.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 377 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 185/365 (50%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ R AVVK NAYGLG E++A LY G + FFV E Sbjct: 23 LTIDLAALGRNYRKLVSMLAPVRAGAVVKANAYGLGAERVATTLYGEGCRHFFVAQFVEA 82 Query: 69 VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 V+LR A+IFVL G+ PG E + ++PV++S+ Q + + P L Sbjct: 83 VRLRPTLARDAQIFVLNGLQPGNEIACAERGIVPVLNSLTQWRQWSATARMLKRCLPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG +E + + ++ I+SHLA ADD S N QL + Sbjct: 143 QFDTGMSRLGFPEEERSELAAALGDGSNVEILFIMSHLASADDMESDQNGEQLAEMARIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G + S A+S G+ LG YH L RPGI+LYGG ++PM+ VV+ + ++ R Sbjct: 203 DEFPGFDISFANSGGVFLGDAYHGVLARPGIALYGGAPHAGGNNPMEPVVSLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG R +A A GYADG P +L G + Sbjct: 263 TVPAGAKVGYGGAHVTQRKMRLATIAAGYADGLPRSLGDR-----------GAVYYNDIR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD D++ + +G +++ G + L+ +A +GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSATVDVSALPEGALTLGSLVEVLGSNQTLEHIARDAGTISYEILTGLGDR 371 Query: 365 YAKFY 369 Y K Y Sbjct: 372 YDKQY 376 >gi|319939813|ref|ZP_08014169.1| alanine racemase [Streptococcus anginosus 1_2_62CV] gi|319811026|gb|EFW07341.1| alanine racemase [Streptococcus anginosus 1_2_62CV] Length = 368 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 154/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + +DL A++ N + A N AVVK +AYG G + + + V Sbjct: 1 MKTSNHRPTKAIVDLAAIRFNIKQITAHIPDNVEKWAVVKADAYGHGAVAVTQS-IESIV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E V+LR +I VL + + + ++S+ L + Sbjct: 60 DGFCVSNIDEAVELREAGISKKILVLGVSDVSAISLAIERKVTCTVASLEWLDLLLQSNI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+G + + + Q+ I +H A AD+ +H Sbjct: 120 DVAGLIVHIKIDSGMGRIGFRDSQEAQEAIHRLTQAGAQVEGIFTHFATADEADTHKFEA 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL RF+ ++ + + + +S+ L R G +YG + + M Sbjct: 180 QLARFKEILGQLETVPPIVHASNSATTLWHAETVMNAVRLGDIIYGLNPSGRTLQLPYEM 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 240 KPALSLVSELVHVKQLEAGADVGYGATYTSENSQYIGTIPLGYADGWTRDMQGFD----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 I G PI+G+++MD + S +G + + G I DVA Sbjct: 295 -------VLIDGQPCPIVGRVSMDQITVRLPQSYP--IGTPVVLIGESGKKSISATDVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ I R + Y Sbjct: 346 KRGTINYEIVCLISDRVPRVY 366 >gi|15801412|ref|NP_287429.1| alanine racemase [Escherichia coli O157:H7 EDL933] gi|168750754|ref|ZP_02775776.1| alanine racemase [Escherichia coli O157:H7 str. EC4113] gi|168756556|ref|ZP_02781563.1| alanine racemase [Escherichia coli O157:H7 str. EC4401] gi|168764385|ref|ZP_02789392.1| alanine racemase [Escherichia coli O157:H7 str. EC4501] gi|168771082|ref|ZP_02796089.1| alanine racemase [Escherichia coli O157:H7 str. EC4486] gi|168777795|ref|ZP_02802802.1| alanine racemase [Escherichia coli O157:H7 str. EC4196] gi|168782549|ref|ZP_02807556.1| alanine racemase [Escherichia coli O157:H7 str. EC4076] gi|168802076|ref|ZP_02827083.1| alanine racemase [Escherichia coli O157:H7 str. EC508] gi|195938845|ref|ZP_03084227.1| alanine racemase [Escherichia coli O157:H7 str. EC4024] gi|208808683|ref|ZP_03251020.1| alanine racemase [Escherichia coli O157:H7 str. EC4206] gi|208815621|ref|ZP_03256800.1| alanine racemase [Escherichia coli O157:H7 str. EC4045] gi|208822589|ref|ZP_03262908.1| alanine racemase [Escherichia coli O157:H7 str. EC4042] gi|209396444|ref|YP_002270130.1| alanine racemase [Escherichia coli O157:H7 str. EC4115] gi|217328528|ref|ZP_03444610.1| alanine racemase [Escherichia coli O157:H7 str. TW14588] gi|254792667|ref|YP_003077504.1| alanine racemase [Escherichia coli O157:H7 str. TW14359] gi|291282205|ref|YP_003499023.1| Alanine racemase, catabolic [Escherichia coli O55:H7 str. CB9615] gi|20137340|sp|Q8X4I9|ALR2_ECO57 RecName: Full=Alanine racemase, catabolic gi|12514890|gb|AAG56041.1|AE005336_2 alanine racemase 2, catabolic [Escherichia coli O157:H7 str. EDL933] gi|187767039|gb|EDU30883.1| alanine racemase [Escherichia coli O157:H7 str. EC4196] gi|188015110|gb|EDU53232.1| alanine racemase [Escherichia coli O157:H7 str. EC4113] gi|189000041|gb|EDU69027.1| alanine racemase [Escherichia coli O157:H7 str. EC4076] gi|189356318|gb|EDU74737.1| alanine racemase [Escherichia coli O157:H7 str. EC4401] gi|189360063|gb|EDU78482.1| alanine racemase [Escherichia coli O157:H7 str. EC4486] gi|189365594|gb|EDU84010.1| alanine racemase [Escherichia coli O157:H7 str. EC4501] gi|189375882|gb|EDU94298.1| alanine racemase [Escherichia coli O157:H7 str. EC508] gi|208728484|gb|EDZ78085.1| alanine racemase [Escherichia coli O157:H7 str. EC4206] gi|208732269|gb|EDZ80957.1| alanine racemase [Escherichia coli O157:H7 str. EC4045] gi|208738074|gb|EDZ85757.1| alanine racemase [Escherichia coli O157:H7 str. EC4042] gi|209157844|gb|ACI35277.1| alanine racemase [Escherichia coli O157:H7 str. EC4115] gi|217318955|gb|EEC27381.1| alanine racemase [Escherichia coli O157:H7 str. TW14588] gi|254592067|gb|ACT71428.1| alanine racemase 2, PLP-binding [Escherichia coli O157:H7 str. TW14359] gi|290762078|gb|ADD56039.1| Alanine racemase, catabolic [Escherichia coli O55:H7 str. CB9615] gi|320187974|gb|EFW62641.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. EC1212] gi|320637335|gb|EFX07142.1| alanine racemase [Escherichia coli O157:H7 str. G5101] gi|320643196|gb|EFX12397.1| alanine racemase [Escherichia coli O157:H- str. 493-89] gi|320648133|gb|EFX16809.1| alanine racemase [Escherichia coli O157:H- str. H 2687] gi|320653967|gb|EFX22041.1| alanine racemase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664583|gb|EFX31734.1| alanine racemase [Escherichia coli O157:H7 str. LSU-61] gi|326342729|gb|EGD66499.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. 1044] gi|326346421|gb|EGD70158.1| Alanine racemase, catabolic [Escherichia coli O157:H7 str. 1125] Length = 356 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ ++D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|184200309|ref|YP_001854516.1| alanine racemase [Kocuria rhizophila DC2201] gi|183580539|dbj|BAG29010.1| alanine racemase [Kocuria rhizophila DC2201] Length = 645 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 152/393 (38%), Gaps = 46/393 (11%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL A+++N + L+ AVVK NAYG G ++A A AG V E Sbjct: 17 AVVDLAAVRHNVGRLLELARGRTLIAVVKANAYGHGAPQVARAALEAGAHMLGTAHVSEA 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR A + ++ +S + G L++ Sbjct: 77 LALRAEGITAPVLAWLHTPSTDFAAAVREDVRLGVSGGELDAVLAAAREAGRPAVVHLKL 136 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERFRTL 185 D+G R G + ++ + + I +HLA AD+P+ + QL T Sbjct: 137 DSGLGRNGATPEQWPALVRRVREAEGEGLLSVEGIFTHLAVADEPARPETAEQLATLTTA 196 Query: 186 I--SHYKGIEASLASSSG--------ILLGPNYHF-QLTRPGISLYGGTDKIN---KSHP 231 + + G+ ++ ++ P+ R G+ LYG + + + Sbjct: 197 VRTAREAGLSPTMVHAANTPGLLSAADREDPDAILRDAVRVGLGLYGLSPFADRTPEDFG 256 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +T R+ ++ AG VSYG + + +A+ +GYADG P Sbjct: 257 LVPAMTLRTRVANVKDVPAGAGVSYGLTYRTEGPTRLALIPLGYADGVPR---------- 306 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS---------------LSIEVGDYIQI 336 V G I + P++G+I MD + D++ S ++ +GD + Sbjct: 307 --VATGAPVRIGNRLHPVVGRIAMDQCVVDLSRSRPVTEAAGKPGAAREPTVRIGDEAVL 364 Query: 337 F--GPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 F G + + D A A+GT NY+++ R+ R + Sbjct: 365 FGAGSNPSVTDWADAAGTINYEVVTRLSPRVPR 397 >gi|238025116|ref|YP_002909348.1| alanine racemase [Burkholderia glumae BGR1] gi|237879781|gb|ACR32113.1| Alanine racemase [Burkholderia glumae BGR1] Length = 375 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+++N + + R AVVK NAYG G E+I PAL + + Sbjct: 3 RPIVAQIRPAAVRHNLAIIRRKAAGTRIWAVVKANAYGHGIERIYPALAD--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L G+ + + D + V + Sbjct: 61 LDEAVRVRELGWTRPVLLLEGLFDASDVAVADRYRLTVAVHGEEQLDMLASARPSRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +++H A AD+ + Q ++F Sbjct: 121 QLKMNSGMNRLGFRPSAFRAAWERASATPAVGRIALMTHFANADEGE---VAWQTQQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G E SL++S+ +L P+ H RPG LYG + + +T + Sbjct: 178 ATEGLPG-ERSLSNSAAVLWHPDAHRDWVRPGTILYGASPTGATRHIADTGLVPAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I ++ E V YG + R I V A GYADGYP G Sbjct: 237 RLIGVQTIEENETVGYGRRFAAKRTMRIGVVACGYADGYPRHAQ-----------TGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T + VG ++++G +++DDVA ASGT Y+L+ Sbjct: 286 AVDGIVTRVVGRVSMDMLTVDLTPCPNARVGSSVELWGEQVRVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 I R Sbjct: 346 IARRVP 351 >gi|162146534|ref|YP_001600993.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl 5] gi|161785109|emb|CAP54653.1| putative alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl 5] Length = 387 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 181/366 (49%), Gaps = 13/366 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL A+ N+ + G A VK +AYGLG +I P L AG FFV + E Sbjct: 19 LTIDLDAVAANYRILRDRVGPRTICGAAVKADAYGLGAARIVPVLAEAGCHTFFVAHLAE 78 Query: 68 GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125 G +R L A IFVL G PG E + + L+PV++S+ Q+ + L G P A Sbjct: 79 GAAIRPLLGTDATIFVLNGAMPGTEAALHEHGLVPVLNSLEQIARWRDLARQAGRDLPAA 138 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQVD+G +R GLS + + L++SHLACAD+P+ N Q F L Sbjct: 139 LQVDSGMSRFGLSDADVDALAARDGSLAGITPLLVMSHLACADEPAHPANHAQRAAFLRL 198 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + ASLA+SSG+ +G ++HF + RPG +LYG +PMQ VV +ARI+ Sbjct: 199 RARLPAAPASLAASSGLFMGSDWHFDMVRPGAALYGINPTPGWPNPMQPVVRLQARIVQT 258 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G V YG R S IA A+GY DG+P G P Sbjct: 259 RWIGPGTAVGYGAAFIADRPSRIATLAVGYGDGFPRAAGGHGHAVLPERPAA-------- 310 Query: 306 MVPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 +PI+G+I+MD D+TD + G + + GP +D A A+GT Y+LL +G Sbjct: 311 KLPIIGRISMDCLAVDVTDISDAPLDAGTALDLIGPHHSIDSAAAAAGTIGYELLTGLGA 370 Query: 364 RYAKFY 369 RY + Y Sbjct: 371 RYHRLY 376 >gi|260171780|ref|ZP_05758192.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides sp. D2] gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 846 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 151/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + + +VK +AYG G +IA +L V V + Sbjct: 487 LEVNLGAMVANLNHYRSMLRHSETKVICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 547 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 605 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 606 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSPQFDAFTREQIELFE 665 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P+ F + R GI LYG + N + V T Sbjct: 666 KGSQELQAAFSHKILRHICNTAGIERFPDAQFDMVRLGIGLYGVSPIDN--SIIHNVSTL 723 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 724 KTTILQIRDVPQEDTVGYSRMGHLARPSRIAAIPIGYADGLNRHLG----------RGNA 773 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 774 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYEVL 832 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 833 TSISTRVKRVY 843 >gi|191168521|ref|ZP_03030307.1| alanine racemase [Escherichia coli B7A] gi|309794276|ref|ZP_07688700.1| alanine racemase [Escherichia coli MS 145-7] gi|190901419|gb|EDV61182.1| alanine racemase [Escherichia coli B7A] gi|308122181|gb|EFO59443.1| alanine racemase [Escherichia coli MS 145-7] Length = 356 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGAVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|311031137|ref|ZP_07709227.1| alanine racemase [Bacillus sp. m3-13] Length = 389 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 151/384 (39%), Gaps = 29/384 (7%) Query: 1 MHS-NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M S + +++DL + N ++ + + AVVK NAYG G ++A AG + Sbjct: 1 MSSFHRDTWVEVDLDCIYENVQAIQEHVTKDVTVIAVVKANAYGHGDVQVANVALEAGAK 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V+ ++E + LR A I VL + ++ + + + Sbjct: 61 YLAVSFLDEAMSLRQQGITAPILVLGASRVSDLPLAAKEDITLTVFQKEWVEEATSAYQG 120 Query: 119 GVSHPYALQVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L++DTG R + +E Q+ I +H A AD+ S Sbjct: 121 TEVVKLHLKLDTGMGRIGARTQEEVAQILELIDKAPNLQIEGIYTHFATADELQSSYVEQ 180 Query: 178 QLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKS 229 Q ERF +L++ +S+ L P F R GI++YG T + Sbjct: 181 QFERFHSLLNQVTNQYSIPMIHCGNSATTLRFPTRIFNAVRVGIAMYGLTPSLEMEPELP 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 P++ + +++ ++K GE VSYG + I +GYADG+ L G++ Sbjct: 241 FPLKEAFSLHTKLVHVKKLSIGESVSYGATYTTKEEEWIGTVPVGYADGWIRKLQGMNI- 299 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 + G PI+G+I MD M + L +G + + G I +D Sbjct: 300 -----------LVDGKFAPIVGRICMDQFMVKLPHELP--IGTKVTLIGKQDGKKISSND 346 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 VA T NY++ I R + + Sbjct: 347 VAAKLDTINYEVPCMISYRVPRMF 370 >gi|19746744|ref|NP_607880.1| alanine racemase [Streptococcus pyogenes MGAS8232] gi|50914870|ref|YP_060842.1| alanine racemase [Streptococcus pyogenes MGAS10394] gi|23813643|sp|Q8NZK4|ALR_STRP8 RecName: Full=Alanine racemase gi|73921670|sp|Q5XAA4|ALR_STRP6 RecName: Full=Alanine racemase gi|19748973|gb|AAL98379.1| putative alanine racemase [Streptococcus pyogenes MGAS8232] gi|50903944|gb|AAT87659.1| Alanine racemase [Streptococcus pyogenes MGAS10394] Length = 366 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 161/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + K+ + ++S+ L + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELKLAITRQVTVTVASLEWLAMAKQEWP 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+GL +D + I +H A AD+ + Sbjct: 120 DLKGLKVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD ++ + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLSKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845] gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845] Length = 826 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 92/371 (24%), Positives = 153/371 (41%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + ++K +AYG G +IA L + V V +E Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPTTKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 GV LR + I ++ K +FD +L P + S + + P Sbjct: 527 GVTLRKNGITSNIMIMNPEMTS-FKTLFDYDLEPEVYSFRLMDALVKAAQKEGITGFPVH 585 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG Q + + + + SH +D D ++ Q F Sbjct: 586 IKLDTGMHRLGFDPQKDMDELIKRLKQQNAIIPRSVFSHFVGSDADNFDEFSAHQFALFD 645 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +SSGI P + R G+ LYG + NK+ + T Sbjct: 646 EGSKKLQAAFSHKIIRHMDNSSGIEHFPERQMDMCRLGLGLYGINPRTNKTINNIS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + + RDS+IA IGYADG L Sbjct: 704 KTTILQLRNVPAGDTVGYSRKGTIDRDSVIAAIPIGYADGLNRHLGNRHC---------- 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 754 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDTLDTIPYEVL 812 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 813 TTISNRVKRVY 823 >gi|163853336|ref|YP_001641379.1| alanine racemase [Methylobacterium extorquens PA1] gi|163664941|gb|ABY32308.1| alanine racemase [Methylobacterium extorquens PA1] Length = 342 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 116/352 (32%), Positives = 180/352 (51%), Gaps = 14/352 (3%) Query: 18 NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77 NW ++ A + A AVVK +AYG G +APAL+ AG + FFV + EG+ R P+ Sbjct: 3 ANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPE 62 Query: 78 ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137 A ++VL G+ PG+ + L PV+ +L +++ M + DTG NRLGL Sbjct: 63 AALYVLNGLPPGRAEAFRAHRLRPVLGDAQELAEWAEAMQGAGPAALHV--DTGMNRLGL 120 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 S+ EAL + + G ++SHL A+ P +N+ Q F + + + + ASLA Sbjct: 121 SVAEALALAGDPVIARAGIDL-VMSHLVSAERPGDPLNARQAADFARVRAAFPQMRASLA 179 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +SSG L + L RPG +L+GG + +PM+ VV EA I+ +R AG Y Sbjct: 180 NSSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYN 239 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 + + +A ++GYADGYP + S G + G PI+G I+MD+ Sbjct: 240 ARWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVPCPIVGLISMDL 288 Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D+TD+ G + G + +D V A+GT Y++L +G+RY + Y Sbjct: 289 IILDVTDATQARRGGTATLIGDSLDIDTVGHAAGTIGYEILTSLGSRYVRNY 340 >gi|254823094|ref|ZP_05228095.1| alanine racemase [Mycobacterium intracellulare ATCC 13950] Length = 391 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+ +N + +G A+ AVVK + YG G + A A AG + V +V Sbjct: 16 LAEALVDLGAIAHNVRLLCEQAGGAQVMAVVKADGYGHGAAQTARAALAAGAAELGVATV 75 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR +A + ++ +SS Q + G + Sbjct: 76 DEALALRADGVRAPVLAWLHPPGFDFGPALLADVQIAVSSERQLDELLDAVRRTGRTATV 135 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + + + L ++SH+ AD P++ VN +Q +R Sbjct: 136 TVKVDTGLNRNGVPPEHYPSMLTALRRAVAENAIVLRGLMSHMVYADQPANPVNDLQAQR 195 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F +++ + A L++SS + P+ F + RPGI++YG + + + Sbjct: 196 FTEMLAQARDQGVRYEAAHLSNSSATMSRPDLAFDMVRPGIAVYGLSPVPERGDMGLIPA 255 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ +GYADG +L Sbjct: 256 MTVKCPVALVKSIRAGESVSYGHTWTARRDTTLALLPVGYADGVFRSLGNRL-------- 307 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 308 ---EVLINGRRRPGVGRICMDQFVVDLGPGPTDVAEGDEAILFGPGASGEPTAQDWADLL 364 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 365 GTIHYEVVTSPRGRITRTY 383 >gi|120402493|ref|YP_952322.1| alanine racemase [Mycobacterium vanbaalenii PYR-1] gi|166969421|sp|A1T566|ALR_MYCVP RecName: Full=Alanine racemase gi|119955311|gb|ABM12316.1| alanine racemase [Mycobacterium vanbaalenii PYR-1] Length = 390 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 26/381 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 IDL A+ +N + +G A AVVK + YG G ++A A AG + V Sbjct: 13 QALPTASIDLDAIAHNVAVLREHAGPAAVMAVVKADGYGHGATQVARAALAAGAAELGVA 72 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 +V E + LR AR+ ++ +SS+ Q T G + Sbjct: 73 TVGEALALRRDGVTARVLAWLHPPGTDFAPALLADVDVAVSSLRQFTDLLDAAGRTGRTA 132 Query: 123 PYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++ DTG +R G+ + + + ++ ++SHLA DDP N VQ Sbjct: 133 DVTVKADTGLSRNGVGEADYPALVDALRRAASDGAVRVRGLMSHLAHGDDPEHPFNDVQA 192 Query: 180 ERFRTL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQ 233 R + ++ +G+ L++S L P+ F + RPGI++YG T + ++ Sbjct: 193 RRLTEMAKLAGARGVSYDVVHLSNSPAALTRPDLAFDMVRPGIAVYGQTPIPQRGDFGLR 252 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T + + +R AG+ VSYG D+ +A+ GYADG LS Sbjct: 253 PAMTVKCPVSAVRPVRAGDAVSYGHTWTAQTDTTLALVPAGYADGVFRALSNRF------ 306 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVAL 348 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 307 -----EVSINGRRYPNVGRICMDQFVVDLGPGPVDVAEGDDAILFGPGTDGEPTAQDWAE 361 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY+++ R + Y Sbjct: 362 LLDTINYEVVTSPRGRIVRTY 382 >gi|320659446|gb|EFX27015.1| alanine racemase [Escherichia coli O55:H7 str. USDA 5905] Length = 356 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ ++D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L + ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLWAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|332363340|gb|EGJ41125.1| alanine racemase [Streptococcus sanguinis SK49] Length = 369 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 146/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDNVPPLVHASNSATSLWHSEIVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I + DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVRLPQAYPL--GTPVALIGNSGAETITVTDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|82751673|ref|YP_417414.1| alanine racemase [Staphylococcus aureus RF122] gi|82657204|emb|CAI81644.1| alanine racemase 1 [Staphylococcus aureus RF122] Length = 382 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 153/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYALQV 128 LR++ A+I VL + + + S L + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISDEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H CAD+ + + Q +RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFVCADE-PGDMTTEQYQRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVVGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|170735828|ref|YP_001777088.1| alanine racemase [Burkholderia cenocepacia MC0-3] gi|169818016|gb|ACA92598.1| alanine racemase [Burkholderia cenocepacia MC0-3] Length = 373 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 157/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AVVK NAYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGLAA--ADGIGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L G+ + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGVFEPADVELADRHRLTVAVHCDEQLDLLIAAKPRQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + N ++ H A AD+ QL++F Sbjct: 121 QLKMNSGMNRLGYRPAAFRAAWERAANAPSIGKITLMMHFANADEGE---VDWQLDQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S+++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 TTAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLSS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSRVELWGDQVKVDDVAQASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|109900323|ref|YP_663578.1| alanine racemase [Pseudoalteromonas atlantica T6c] gi|122971491|sp|Q15NL4|ALR_PSEA6 RecName: Full=Alanine racemase gi|109702604|gb|ABG42524.1| alanine racemase [Pseudoalteromonas atlantica T6c] Length = 375 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 107/383 (27%), Positives = 176/383 (45%), Gaps = 31/383 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALS----------GNARTAAVVKDNAYGLGCEKIAPALYN 54 + + +DL A++ N+ NAL + T AV+K +AYG G A AL N Sbjct: 3 RPISITVDLDAIRQNFAYANALGVNALESSINDRQSNTLAVIKADAYGHGAVATARAL-N 61 Query: 55 AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYS 113 V+S+EE V LR + + I +L G P + ++ + NL VI + Q+ Sbjct: 62 GQAALLAVSSIEEAVSLRQHHIKTPILLLEGCFCPSELSVVNELNLQIVIHNQKQIEDLL 121 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + L+VDTG +RLG+ + +AL + K ++++H A +D P Sbjct: 122 AQVLT-KPIKVWLKVDTGMHRLGIPVSDALKAYTQLASSKNVCSVMLMTHFATSDHPDHP 180 Query: 174 VNSVQLERFRTLISHYKGIE----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 + Q++ + L SLA+S+ +L P RPGI LYG + Sbjct: 181 LLLSQIQSIQKLAEKVSAEPSYAGCSLANSAALLATPKSISTWNRPGIMLYGISPFNQSD 240 Query: 230 ---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 P+ +T +++I +R+ GE V YG R S+IA A GY DGYP Sbjct: 241 INVLPLIPAMTFSSKVIALRRVATGESVGYGAIWTAKRPSIIATVAAGYGDGYPR----- 295 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + G + G + P+ G+++MDM D+T I G ++++G +I ++DV Sbjct: 296 ------TAKSGTPVMVNGQIAPLAGRVSMDMLCVDVTQLTDISEGSPVELWGKNIPVNDV 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A + T Y+L+ R+ TR + + Sbjct: 350 AAWADTLGYELVTRMPTRAKRVF 372 >gi|170681793|ref|YP_001744011.1| alanine racemase [Escherichia coli SMS-3-5] gi|300939584|ref|ZP_07154241.1| alanine racemase [Escherichia coli MS 21-1] gi|170519511|gb|ACB17689.1| alanine racemase [Escherichia coli SMS-3-5] gi|300455588|gb|EFK19081.1| alanine racemase [Escherichia coli MS 21-1] Length = 356 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|94994987|ref|YP_603085.1| alanine racemase [Streptococcus pyogenes MGAS10750] gi|166969432|sp|Q1J545|ALR_STRPF RecName: Full=Alanine racemase gi|94548495|gb|ABF38541.1| Alanine racemase [Streptococcus pyogenes MGAS10750] Length = 366 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 161/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + K+ + ++S+ L + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELKLAITRQVTVTVASLEWLAMAKQEWP 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+GL +D ++ I +H A AD+ + Sbjct: 120 DLKGLKVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGAEVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD + + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEIIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|307707071|ref|ZP_07643868.1| alanine racemase [Streptococcus mitis SK321] gi|307617597|gb|EFN96767.1| alanine racemase [Streptococcus mitis SK321] Length = 367 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 159/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKFAVVKANAYGHGAVAVATAIQDE-VDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR RI +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGLSKRILILGVSEIEAVSLAKEYDITLTVAGLEWIQVLLDKEADLAGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREAGEAEQAQDLLKEHGAGVEGIFTHFATADEESDTYFNEQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ KG+ ++S+ L F R G ++YG ++ + ++ +T Sbjct: 185 KTILASMKGLPELIHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESAMVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216] gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216] Length = 790 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 107/373 (28%), Positives = 164/373 (43%), Gaps = 24/373 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++DL A+ +N + L R A+VK +YG G ++A L + GV V +E Sbjct: 429 LEVDLDAMIHNLNYFRARLRPGVRLVAMVKAASYGAGDFEVAQMLQHQGVNYLAVAFADE 488 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 GV LR + I VL G ++ L P I + L F+ + S+P Sbjct: 489 GVLLRERGIRMPIVVLNA-DEGSFDLMVAHRLEPEIYNFRSLAFFSKAVERVGEESYPIH 547 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRT 184 +++DTG +RLG E T +++ I SHL C+D P Q+ RF Sbjct: 548 IKLDTGMHRLGFMEGELDMLTETLGETPSVKVATIFSHLNCSDMPQEDRYTREQIARFDR 607 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + A+S+ I P F + R G+ LYG + N + T + Sbjct: 608 MSGRLAAALPYPVLRHTANSAAIERFPEAQFDMCRLGLGLYGFGFEHNDELKPVS--TLK 665 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +RI+ ++ AGE V YG KLTRDS+ A +GYADG L Sbjct: 666 SRIVQLKHLSAGEAVGYGRAGKLTRDSVTATVPMGYADGLDRHLGCGRWS---------- 715 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVALASGTTNYDL 357 + G PI+G++ MD M D+TD +E GD + IF P +D+A T Y++ Sbjct: 716 MLVAGRPAPIVGRVCMDSCMIDVTDIPGVEEGDEVVIFSAVPGNTPEDMARVLDTIPYEV 775 Query: 358 LVRIGTRYAKFYT 370 + + R + Y+ Sbjct: 776 MTSVSGRVKRIYS 788 >gi|3913032|sp|O30746|ALR2_KLEAE RecName: Full=Alanine racemase, catabolic gi|2360966|gb|AAC38140.1| alanine racemase [Klebsiella aerogenes] Length = 356 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 157/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL AL+ N + + +R AV KDNAYG G ++ AL F + + Sbjct: 3 RPVVASIDLLALRQNLQIVRRAAPGSRLWAVDKDNAYGHGVARVWSALSA--ADGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G E + D +P + Sbjct: 61 LEEAILLREQGWKGPILLLEGFFHADELAVLDQYRLPTSVHSNWQIKALQQAKLRAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A++P V ++ Sbjct: 121 YLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---E 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SLA+S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QAAEGLDCPRSLANSAATLWHPEAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ GE + YGG + T++ I + A GYADGYP G Sbjct: 238 EIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPR-----------VAPSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +G ++++G +IK+DDVA +SGT Y+L+ Sbjct: 287 LVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|254563262|ref|YP_003070357.1| alanine racemase [Methylobacterium extorquens DM4] gi|254270540|emb|CAX26543.1| putative alanine racemase (alr-like) [Methylobacterium extorquens DM4] Length = 342 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 116/352 (32%), Positives = 179/352 (50%), Gaps = 14/352 (3%) Query: 18 NNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77 NW ++ A + A AVVK +AYG G +APAL+ AG + FFV + EG+ R P+ Sbjct: 3 ANWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPE 62 Query: 78 ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137 A ++VL G+ PG + L PV+ +L +++ M + DTG NRLGL Sbjct: 63 AALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGAGPAALHV--DTGMNRLGL 120 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 S+ EAL + + G ++SHL A+ P +N+ Q F + + + + ASLA Sbjct: 121 SVAEALALAGDPVIARAGIDL-VMSHLVSAELPDDPLNTRQAADFARVRAAFPQMRASLA 179 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +SSG L + L RPG +L+GG + +PM+ VV EA I+ +R AG Y Sbjct: 180 NSSGTCLANDARHDLLRPGYALFGGNPDPGQPNPMRPVVRLEATILQVRDVEAGATCGYN 239 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 + + +A ++GYADGYP + S G + G PI+G I+MD+ Sbjct: 240 ARWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVPCPIVGLISMDL 288 Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D+TD+ G + G + +D V A+GT Y++L +G+RY + Y Sbjct: 289 IILDVTDATQARRGGTATLIGDALDIDTVGQAAGTIGYEILTSLGSRYVRDY 340 >gi|227509299|ref|ZP_03939348.1| alanine racemase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191229|gb|EEI71296.1| alanine racemase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 374 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 146/381 (38%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 RL I+ A+ NN + + VVK N YG G ++A NAG + F V Sbjct: 7 RNARLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGAKGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT---FYSKLMSCGV 120 +EEG++LR I VL P I D+++ +SS L Sbjct: 67 LLEEGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILNQQDSKE 126 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178 L +DTG R+G + L K I +H A AD Q Sbjct: 127 KLHVHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFDFEGIFTHFATADSKDDTYFQYQ 186 Query: 179 LERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 E ++ +++ + +A+++ L + R GIS YG + + + Sbjct: 187 YENYQKMLAVVDKRPKYVHVANTATSLWHKVCGANMVRYGISTYGLNPSGKEITRTPYTL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ +A + ++K G+ + YG + D I IGYADG+P + G Sbjct: 247 FPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGFS----- 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 + G PI+G++ MD M + + I G +I +DD+A Sbjct: 302 -------VLVDGQYCPIVGRVCMDQFMIKLPKQYG--TDTVVTIIGKSGAHEITVDDIAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 353 QLGTINYEVVCGFSERLQRKY 373 >gi|262282055|ref|ZP_06059824.1| alanine racemase [Streptococcus sp. 2_1_36FAA] gi|262262509|gb|EEY81206.1| alanine racemase [Streptococcus sp. 2_1_36FAA] Length = 368 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 152/381 (39%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + +DL+A+ N + A + AVVK NAYG G ++ + + V Sbjct: 1 MKTSIHRPSQALVDLSAIHFNIQQLKAHLPQDVEKWAVVKANAYGHGAVVVSSYIDDI-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR +I +L + + + ++S+ L Sbjct: 60 DGFCVSNIDEALELREGGLDKKILILGVSAIEVVPLAIEHKITLTVASLEWLDLLEASGL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G ++L N Q+ I +H A AD+ + Sbjct: 120 SLQGLVVHLKVDSGMGRIGFRDSQSLQIAINRLQSAGVQVEGIFTHFATADEADASKFEE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F+ +++ + + +S+ L + R G +YG + + + Sbjct: 180 QLACFKGILAELDALPPIIHASNSATSLWHADTVMNAVRLGDIIYGLNPSGSALELPYDI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 240 KPALSLVSELVHVKEVEAGADVGYGATYTADEGQFIGTIPLGYADGWTRDMQGFD----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 I G PI+G+++MD + + G + G I DVA Sbjct: 295 -------VLIDGQRCPIVGRVSMDQITVRLPKKYPL--GTPVVFIGKSGTESISATDVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ I R + Y Sbjct: 346 KRGTINYEVVCLISDRVPRIY 366 >gi|84497889|ref|ZP_00996686.1| putative alanine racemase [Janibacter sp. HTCC2649] gi|84381389|gb|EAP97272.1| putative alanine racemase [Janibacter sp. HTCC2649] Length = 391 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 88/380 (23%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL A+ +N ++ S A AVVK N YG G A A G V Sbjct: 18 AWVTIDLAAIADNVRELDRRSPGAEVMAVVKANGYGHGLVPSARAAVAGGATWLAVAQFN 77 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR + D ++ +S+ + + G + Sbjct: 78 EALDLRAAGVTTPLLTWLYAPGVDFGAAIDADIDISVSAPWALDAVVAAARARGRAARIH 137 Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG R G + + + ++ + SH A AD P Q +RF Sbjct: 138 VKVDTGLGRNGALGQGWTDLIAALGPVVAEGAVEVIGVWSHFARADAPQDPTVLGQRDRF 197 Query: 183 -----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 + + LA+S+ L PN HF L RPG+++YG + + + ++ Sbjct: 198 VEAAEELERAGIRPQLRHLANSAATLTNPNAHFDLVRPGLAVYGLSPVPDLGSPQDFGLR 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + AR+ L+++A G+ VSYG D+++ + IGYADG P + Sbjct: 258 EAMRVTARLALVKEASTGQGVSYGHIYTTPEDTVLGLVPIGYADGIPRHAGNV------- 310 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 G + + + G++ MD + D+ + GD + I G + D A A Sbjct: 311 ----GPVKVGDRRLTVAGRVCMDQFVLDLGAGYAGGAGDEVVILGRGVDDEPTAQDWATA 366 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T NY+++ R+ R + + Sbjct: 367 IDTINYEIVTRMSDRLPRVF 386 >gi|146299078|ref|YP_001193669.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium johnsoniae UW101] gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101] Length = 822 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 157/370 (42%), Gaps = 21/370 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L A+ +N + L+ + + +VK YG G +IA L + V V +E Sbjct: 463 LEINLDAINHNLNYFKSKLADDVKIMVMVKAFGYGNGGLEIAKLLEHNKVNYLGVAFADE 522 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G+ L+ + I VL I L P I S+ L + K+ P Sbjct: 523 GISLKNGGIKLPIMVLNPESTS-FPSIIQYKLEPEIYSIKGLNAFLKIAREKNLKDFPIH 581 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRT 184 ++VDTG +RLG + ++ I+SHLA +DDP Q+ F Sbjct: 582 IKVDTGMHRLGFEDNTIDELIATLKGNSTVRVQSILSHLATSDDPKHFDFVEKQISLFER 641 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 L S + ++SGI P+ + + R GI LYG ++ + ++ V T + Sbjct: 642 LSSKLISELNINPIRHILNTSGISNFPDAQYNMVRLGIGLYGVSNDPAEQKYLENVGTLK 701 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I +R AG+ V YG + +++ IA IGYADG G Sbjct: 702 SIISQVRTIPAGDSVGYGRRFMADKETKIATIPIGYADGISRLWGNQI----------GF 751 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 IK I+G + MDM M D++ + GD + IFG + ++A A T Y+++ Sbjct: 752 VTIKNQKAYIVGSVCMDMLMVDVSHI-DCKEGDSVIIFGESPTVIEMAEALKTIPYEIMT 810 Query: 360 RIGTRYAKFY 369 I R + + Sbjct: 811 SISQRVKRVF 820 >gi|298695345|gb|ADI98567.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus ED133] Length = 382 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 156/371 (42%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ ++ + Q +RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGYMTTEQYQRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565] gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565] Length = 852 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 146/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA L V V + Sbjct: 493 LEVNLGAMVENLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKTLQEHHVDYLAVAVAD 552 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR + I ++ K +FD L P + + L K + P Sbjct: 553 EGSELRKAGITSSIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 611 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFR 183 +++DTG +RLG ++ N+ + SH +D Q+E F Sbjct: 612 HVKLDTGMHRLGFEAEDIPLLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIELFE 671 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P F + R GI LYG + N + V T Sbjct: 672 KGSQELQAAFSHKILRHICNTAGIERFPGAQFDMVRLGIGLYGVSPIDN--SIIHNVSTL 729 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 730 KTTILQIRDVPEEDTVGYSRMGHLIRPSRIAAIPIGYADGLNRHLG----------RGNA 779 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 780 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLDTIPYEVL 838 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 839 TSISTRVKRIY 849 >gi|333005015|gb|EGK24535.1| alanine racemase [Shigella flexneri VA-6] Length = 356 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|323977248|gb|EGB72335.1| alanine racemase [Escherichia coli TW10509] Length = 356 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPEGIAGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|254524402|ref|ZP_05136457.1| alanine racemase [Stenotrophomonas sp. SKA14] gi|219721993|gb|EED40518.1| alanine racemase [Stenotrophomonas sp. SKA14] Length = 356 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 164/369 (44%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L G + A++K +AYG G + A AL F V + Sbjct: 2 RPARALIDLGALRSNYRLAREL-GGGKALAIIKADAYGHGAVRCAQAL-EGEADGFGVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A I +L GI P ++ + + + S QL + Sbjct: 60 IEEALELRQSGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSSWQLEALAAF-DSPRPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +RLGL + + ++++HLA AD+ S Q F Sbjct: 119 VWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFA 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 I G E S+ +S +L P+ RPG+ LYG + + ++ V+T ++ Sbjct: 179 RAIDGLSG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDNTALTERLRPVMTMQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I R AGE V YG + + + V A+GYADGYP G Sbjct: 238 KVIAERWIEAGEPVGYGARFVAKSRTRVGVVALGYADGYPQFAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G ++G+++MDM D+T +G ++++G L ++A G + Y L Sbjct: 287 LIDGQPGGLIGRVSMDMLTVDLTAHPQAGIGSVVELWGTAPTLSELAPRCGVSAYQLPCA 346 Query: 361 IGTRYAKFY 369 + R A+ Y Sbjct: 347 V-KRVARVY 354 >gi|283771238|ref|ZP_06344127.1| alanine racemase [Staphylococcus aureus subsp. aureus H19] gi|283459443|gb|EFC06536.1| alanine racemase [Staphylococcus aureus subsp. aureus H19] Length = 382 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 155/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPVKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q +RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKIKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|255994095|ref|ZP_05427230.1| alanine racemase [Eubacterium saphenum ATCC 49989] gi|255993763|gb|EEU03852.1| alanine racemase [Eubacterium saphenum ATCC 49989] Length = 382 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 172/379 (45%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++I L + +N + ++G ++ A+VK +AYG G +I+ L + G+ F + + Sbjct: 14 RSAWMEISLANILHNVKEIQKIAGKSKIIAMVKADAYGHGATEISTFLADNGIDYFAIAT 73 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 ++EG++LR I +L + II + + +P+++S+ S+ G Sbjct: 74 LKEGIELRRAGLNKNIILLSPVDNYYADIIVENDFMPIVTSLDNAKALSETAKSYGKVLS 133 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R+G EA+D + ++SHL+ + + + +QL++F Sbjct: 134 IMIALDTGMGRIGYLPNPEAIDEITKIAKLDDIHIKGLLSHLSSSPETDKSYSYMQLDKF 193 Query: 183 RTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 + KGI + +S I+ + RPGI +YG + ++ Sbjct: 194 KDFTEKLKSKGINPEIKTIANSGAIVSMRDMMLDAIRPGILIYGYFPEDTCTCDDLDLKP 253 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ +A II +++ G SYG + +DS+I +GYADGYP SG Sbjct: 254 ALSVKANIIHMQRVKKGFCCSYGRKFVAKKDSIIGTIPVGYADGYPANYSG--------- 304 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 K + G PI G I MD+ M D+TD + +VGD + + G D I D+ S Sbjct: 305 --NAKVIVNGKTAPIAGAICMDLCMIDLTDIENSKVGDEVILLGSDGKNTITALDIEKGS 362 Query: 351 GTTNYDLLVRIGTRYAKFY 369 G Y++L G R K + Sbjct: 363 GMFRYEILTGFGQRLPKQF 381 >gi|227512311|ref|ZP_03942360.1| alanine racemase [Lactobacillus buchneri ATCC 11577] gi|227522397|ref|ZP_03952446.1| alanine racemase [Lactobacillus hilgardii ATCC 8290] gi|227084486|gb|EEI19798.1| alanine racemase [Lactobacillus buchneri ATCC 11577] gi|227090455|gb|EEI25767.1| alanine racemase [Lactobacillus hilgardii ATCC 8290] Length = 374 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 147/381 (38%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 RL I+ A+ NN + + VVK N YG G ++A NAG + F V Sbjct: 7 RNARLIINQKAIYNNVKNAVTHTQSGTDLFVVVKANGYGHGAVQVARIAENAGAKGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT---FYSKLMSCGV 120 +EEG++LR I VL P I D+++ +SS L + Sbjct: 67 LLEEGLELRQAGFTEPILVLGITEPTFAPIARDSHISLTVSSEEWLKTAGIILNQQASKE 126 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178 L +DTG R+G + L K I +H A AD Q Sbjct: 127 KLHVHLAMDTGMGRIGFQTPDELQEAMLVLKKYQDTFDFEGIFTHFATADSKDDTYFQYQ 186 Query: 179 LERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 E ++ +++ K +A+++ L + R GIS YG + + + Sbjct: 187 YENYQKMLAVVDKKPKYVHVANTATSLWHKVCGANMVRYGISTYGLNPSGKEITRTPYTL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ +A + ++K G+ + YG + D I IGYADG+P + G Sbjct: 247 FPAMSFQAGLSYVKKVPKGKSIGYGATYQTKEDEWIGTVPIGYADGFPRKMQGFS----- 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 + G PI+G++ MD M + + I G +I +DD+A Sbjct: 302 -------VLVDGQYCPIVGRVCMDQFMIKLPKQYG--TDTVVTIIGKSGAHEITVDDIAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ R + Y Sbjct: 353 QLGTINYEVVCGFSERLQRKY 373 >gi|327461776|gb|EGF08107.1| alanine racemase [Streptococcus sanguinis SK1] Length = 369 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALDAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRLSMDQITVRLPQAYPL--GTLVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|142822|gb|AAA22378.1| D-alanine racemase cds [Bacillus subtilis] gi|224732|prf||1112147A Ala racemase Length = 389 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 166/384 (43%), Gaps = 30/384 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R +IDL+A+K N +M G + AV K NAYG G + A A +AG Sbjct: 1 MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVEKANAYGHGDAETAKAALDAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 + ++E + LR +A I VL + P I + ++ SV L ++ Sbjct: 61 ASCLAMAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYDVTLTGYSVEWLQEAARHT 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVN 175 G S + L+VDTG NRLG+ +E + ++ + + +H A AD+ Sbjct: 121 KKG-SLHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLKCKGVFTHFATADEKERGYF 179 Query: 176 SVQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 +Q ERF+ LI+ + A+S+ L F R GI +YG + S + Sbjct: 180 LMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNAVRFGIGMYGLRPSADMSDEIP 239 Query: 234 TVV----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + T + + ++ GE VSYG + +D+ I +GYADG+ L G D Sbjct: 240 FQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDTWIGTVPVGYADGWLRKLKGTDI- 298 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 +KG + I G+I MD M ++ G + + G I +D+ Sbjct: 299 -----------LVKGKRLKIAGRICMDQFMVELDQEYP--PGTKVTLIGRQGDEYISMDE 345 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ I +R + + Sbjct: 346 IAGRLETINYEVACTISSRVPRMF 369 >gi|284920994|emb|CBG34059.1| alanine racemase, catabolic [Escherichia coli 042] Length = 356 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLDIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLTAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|227832290|ref|YP_002833997.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975] gi|227453306|gb|ACP32059.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975] Length = 365 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 21/371 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ +DL A+ +N + AR VVK +AY G E+ AP + AG F V ++ Sbjct: 1 MLKTTVDLNAIAHNVARVKEAVAPARLMCVVKADAYAHGIERCAPVMAQAGADAFGVATL 60 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E V LR I ++ I S+ L++ Sbjct: 61 AEAVALRKVIDNLPIAAWLWEPTEDLAPALAADIQIGIPSL---AHAQALIAAETPTEAF 117 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT- 184 + V+TG +R G+ + + + ++SH ACAD+P N Q FR Sbjct: 118 VMVETGMHRSGVDKHVWEETFRLLADAPHITVLGLMSHFACADEPEHPHNDHQESEFRQA 177 Query: 185 -LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 ++ G+E LA+S L P+ F+ R G++LYG H ++ +T EA Sbjct: 178 LALAREVGLECPLNHLANSPAALTRPSARFEQVRVGLALYGLEPVAGLDHGLEPAMTWEA 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++ ++ AGE YG + +A ++GYADG P G + Sbjct: 238 SVVAVKPISAGESTCYGLTWTAESERELATVSVGYADGLPRAFQGAL-----------QV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDLL 358 I G + P +G++ MD + D+ + + GD IFG + +A A+GT NY+++ Sbjct: 287 GIGGELYPQVGRVCMDQIVVDLGSNPHGVRAGDTAVIFGRGGMSATGLAEAAGTINYEVV 346 Query: 359 VRIGTRYAKFY 369 R R + Y Sbjct: 347 CRPTGRTERTY 357 >gi|307707478|ref|ZP_07643960.1| alanine racemase [Streptococcus mitis NCTC 12261] gi|307616430|gb|EFN95621.1| alanine racemase [Streptococcus mitis NCTC 12261] Length = 367 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A + + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPEGTLKFAVVKANAYGHGAVAVATTIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR RI +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGLSKRILILGVSEIEVVALAKEYDITLTVAGLEWIQALLDKEADLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREAHEAEQAQDLLQQHGARVEGIFTHFATADEKSDDYFNTQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ KG+ ++S+ L F R G ++YG ++ + ++ +T Sbjct: 185 KTILAGMKGLPELIHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVSAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFA---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|257431477|ref|ZP_05607850.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus 68-397] gi|257277718|gb|EEV08388.1| alanine racemase 1 [Staphylococcus aureus subsp. aureus 68-397] Length = 382 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDSDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYHRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|302385985|ref|YP_003821807.1| alanine racemase [Clostridium saccharolyticum WM1] gi|302196613|gb|ADL04184.1| alanine racemase [Clostridium saccharolyticum WM1] Length = 395 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 99/375 (26%), Positives = 164/375 (43%), Gaps = 27/375 (7%) Query: 10 KIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL A+++N +M A L R VVK + YG G +A A + V + V +VEEG Sbjct: 10 TVDLDAIRHNMEAMKANLKDGTRMIGVVKSDGYGHGAVPVAWA-IDPYVWGYAVATVEEG 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127 V LR + + I VL + ++ + + + + + S L G L Sbjct: 69 VILRKHGIRKPILVLGVVPYEGYGLLVEHGISSAVFQLKRAERLSSLAVREGKKAVIHLV 128 Query: 128 VDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +DTG +R+G + +EA ++ + +H A AD+ QLE+++ + Sbjct: 129 LDTGMSRIGYPVTEEAAKEAATICGLPGIEVEGLFTHFAKADERDKKATDHQLEQYQKFV 188 Query: 187 S----HYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238 + I S+S +L + R GIS+YG + + Sbjct: 189 AMLADRGITIPMLHCSNSAGILDLQRANLHAVRAGISIYGIYPSGEVDRDTVKLRPAMEL 248 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++ I ++K G VSYGG R+ +A +GY DGYP LSG G Sbjct: 249 KSFISYVKKIGPGTSVSYGGTFTADREMTVATVPVGYGDGYPRNLSG-----------KG 297 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354 + I+G ILG++ MD M D+T E D + + G +I ++D+A+A G + Sbjct: 298 EVLIRGQRARILGRVCMDQFMVDVTGIHEAEEEDEVVLIGRQGKEEITVEDLAMAGGGFH 357 Query: 355 YDLLVRIGTRYAKFY 369 Y+++ IG R + Y Sbjct: 358 YEIVCDIGKRVPRIY 372 >gi|292559088|gb|ADE32089.1| Alanine racemase [Streptococcus suis GZ1] Length = 367 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 151/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++++L A+ N+ M L AVVK NAYG G +A L + F V Sbjct: 6 HRPTQIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAYGHGAVAVAKKLSSQ-AAGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR + I +L + + N+ ++S+ L L + Sbjct: 65 SNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNISVTVASLDWLQDAKGLEADLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG R+G L + + + +H A AD+ QL F Sbjct: 125 TVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIEGVYTHFATADEVDQAHFESQLSVF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + + + +S+ + + F L R G LYG + +Q ++ Sbjct: 185 KEFLDVLPITPRWIHASNSATSIWHADTVFNLVRLGNILYGLNPSGRVLELPFDVQPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I+ +++ AG + YG T IA IGYADG +L GL Sbjct: 245 LVSEIVHVKQVEAGTTIGYGATYHSTDSEWIATVPIGYADGLVRSLQGLS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G I+G+I+MD + + + G + + G D I + + A GT Sbjct: 295 --VLVDGQACEIVGRISMDQITIRLPHAYPL--GQKVTLIGQDGDKTISVQEWADRIGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + + Sbjct: 351 NYEVVCLLTDRLPRIF 366 >gi|242278092|ref|YP_002990221.1| alanine racemase [Desulfovibrio salexigens DSM 2638] gi|242120986|gb|ACS78682.1| alanine racemase [Desulfovibrio salexigens DSM 2638] Length = 374 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 104/379 (27%), Positives = 163/379 (43%), Gaps = 30/379 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +++DL A+++N+ + +R VVK +AYG G ++A AL G F V +V Sbjct: 8 LEVEVDLNAIRHNYRLLRDK--GSRVYGVVKADAYGHGLIEVARALEEEGADTFAVGTVG 65 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPY 124 EG++LR RI L G ++ N I + + + + G Sbjct: 66 EGMQLRKSGCSKRIISLLGPLNEEDCFNAAQNKIIPFIGEFEQLEMLSAVVSAQGRKVEI 125 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF- 182 +L+ DTG +RLG S+ E L SHLA +DDP S Q E F Sbjct: 126 SLKFDTGMSRLGFSVNELDKLIEWLKINPQICPVLASSHLATSDDPAYEGYMSAQAETFS 185 Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-----QT 234 + L +EASLA+S+GIL+ H+ R GI+LYG + + Sbjct: 186 GILKRLADAGYELEASLANSAGILVHDQVHYSAQRGGIALYGSNPLLGTEWSESGRDLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + I +R+ G+ +SYG RD +A+ GYADGY LS Sbjct: 246 AMQVRTNIAAVRELKKGQAISYGCTYTADRDMTVAIVCAGYADGYSRGLSST-------- 297 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G+ I G ILG++ M + + D++ ++ GD + G + I +D+A Sbjct: 298 ---GEVCIHGKRAKILGRVCMQLCIVDVSHIEGVKFGDTAYLLGGEGEGHISAEDLAGWW 354 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ +G + Y Sbjct: 355 QTITYEIFCLLGM-NPRTY 372 >gi|238788483|ref|ZP_04632276.1| Alanine racemase, catabolic [Yersinia frederiksenii ATCC 33641] gi|238723396|gb|EEQ15043.1| Alanine racemase, catabolic [Yersinia frederiksenii ATCC 33641] Length = 357 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 154/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++L+AL++N ++ +G+A+ +VVK NAYG G +I L F + Sbjct: 3 RPISATLNLSALRHNLSTVRHHAGSAKIWSVVKANAYGHGLARIWQGLAA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G Q+ ++ D + K Sbjct: 61 LNEAIMLREQGWQGPILLLEGFFQPQDLVLLDYYRLTTTVHSDWQLEAIKAARLSAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +A + + ++SH A AD+ Q + Sbjct: 121 YLKLNSGMNRLGFPVGQAEAIWQWAKSLSHVGEVTLMSHFANADNDIGVET--QFSLIQQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 + +S+ IL P H+ RPGI LYG + +Q V++ + Sbjct: 179 ATAQIPAARCFA-NSAAILRHPETHYDWVRPGIILYGAAPSGDSADIAEMGLQPVMSLNS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ G V YG + + I V A GYADGYP G Sbjct: 238 EIIALQSLSTGHSVGYGSRYTASAAQRIGVVACGYADGYPRLA-----------PSGTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T ++G ++++G + +DDVA A+GT Y+L+ Sbjct: 287 RVDGILTQTVGSISMDMLTVDLTPCPQAQIGSKVEVWGENQPIDDVAKAAGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LANRVP 352 >gi|324995181|gb|EGC27093.1| alanine racemase [Streptococcus sanguinis SK678] gi|327469131|gb|EGF14603.1| alanine racemase [Streptococcus sanguinis SK330] gi|327473513|gb|EGF18933.1| alanine racemase [Streptococcus sanguinis SK408] gi|327489061|gb|EGF20856.1| alanine racemase [Streptococcus sanguinis SK1058] Length = 369 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIAFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLDWLDLALDAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQVAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + + +S+ L R G +YG + + ++ ++ Sbjct: 186 HQILSELDNVPSLVHASNSATSLWHRETVLNAVRLGDIIYGLNPSGRVLALPYEFKSALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSKSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRVSMDQITVCLPQAYPL--GTSVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|241759708|ref|ZP_04757808.1| alanine racemase [Neisseria flavescens SK114] gi|241319716|gb|EER56112.1| alanine racemase [Neisseria flavescens SK114] Length = 352 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L+ N+ + L GN + AV+K +AYG G + A AL + F V + Sbjct: 2 RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+EGV+LR + I +L G+ E D + Sbjct: 60 VDEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFVHHEWQRPTTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP S + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ S +G ++++G I +++V+ +G Y++L I R Sbjct: 288 KRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAGMIPYEILCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|225869873|ref|YP_002745820.1| alanine racemase [Streptococcus equi subsp. equi 4047] gi|254802387|sp|C0M6I5|ALR_STRE4 RecName: Full=Alanine racemase gi|225699277|emb|CAW92611.1| alanine racemase [Streptococcus equi subsp. equi 4047] Length = 366 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 161/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++DL A++ N ++ RT AVVK NAYG G ++ A+ + V Sbjct: 1 MISSLHRPTVARVDLEAIRANIDHIHQHIPKKVRTYAVVKANAYGHGAVAVSKAVEDQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L I + ++ L ++S+ L K Sbjct: 60 DGYCVSNLDEALELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLELAKKESV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + QL I +H A ADD + Sbjct: 120 DFSQLHVHVKVDSGMGRIGVRSLAEANQLISILSDMGVQLDGIFTHFATADDSDHAMFDK 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232 QL F+ L+ A + +S+ L F R GI +YG N P+ Sbjct: 180 QLTFFKQLVEQLDKRPALVHASNSATSLWHSETIFNAIRLGIVIYGLNPSGNSLSLPCPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+R++ +++ AG+ V YG + IGYADG+ + G Sbjct: 240 KEALSLESRLVHVKQIQAGDSVGYGASYVAAEPEYVGTLPIGYADGWTRNMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K ++G I+G+++MD + + +G + + G I DVA Sbjct: 294 ------KVLVEGEFCDIIGRVSMDQLTIRLPKAYP--IGTKVTLIGQQGKQVITATDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 YRGTINYEVLCLLSDRIPREY 366 >gi|58040489|ref|YP_192453.1| alanine racemase [Gluconobacter oxydans 621H] gi|58002903|gb|AAW61797.1| Alanine racemase [Gluconobacter oxydans 621H] Length = 367 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 206/365 (56%), Gaps = 18/365 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L + L A+ N++ + AL A A VVK +AYGL +++AP L G FFV ++ Sbjct: 15 AWLGVSLRAIAENYNLVAALGAGAECAVVVKADAYGLSADRVAPVLAARGAGTFFVAHLD 74 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125 EG+ LR P+ RIFVL+G PG E + NL PV++ + Q+ + + G + P A Sbjct: 75 EGIALRAILPEVRIFVLHGFMPGCEGSMQAHNLFPVLNDLEQVRSWQRLCREKGCAFPAA 134 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQ DTG +R GLS Q+ D + + L L++SHLACAD P + N++Q +RF + Sbjct: 135 LQFDTGMSRFGLSDQDLEDRSVF----EGLNLQLVMSHLACADTPDNPANAIQRKRFVEM 190 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + + G+ SLA+SSGI LGP+YHF+L RPG +LYG S + VV+ +ARI+ I Sbjct: 191 AAGFPGVPRSLAASSGIFLGPDYHFELIRPGAALYGIAPFEG-SRVLNPVVSLDARIVQI 249 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AG+ V YG T+ + IA +GYADG+ +G G + Sbjct: 250 RTVQAGDRVGYGLGWTATKPTRIATLGLGYADGFFRAQAGH-----------GAVWYGQT 298 Query: 306 MVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P++G+++MD D+TD+ ++ GD + + GP +D +A ++GT Y++L +G+R Sbjct: 299 RLPVIGRVSMDSISVDLTDAPAGLKAGDVLSVLGPAQDVDALARSAGTIGYEVLTALGSR 358 Query: 365 YAKFY 369 + + Y Sbjct: 359 FHRVY 363 >gi|254468799|ref|ZP_05082205.1| alanine racemase [beta proteobacterium KB13] gi|207087609|gb|EDZ64892.1| alanine racemase [beta proteobacterium KB13] Length = 357 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ I+L K+N + + +L+ +++ A +K NAYG G +A A F V + Sbjct: 2 RPLKALINLDNAKHNLNYVRSLAPSSKIMATLKANAYGHGLTLMAGAFNE--ADAFSVLT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E+ ++LR +I +L G ++ I ++ + + Sbjct: 60 IEDAIELREAGFDKKILLLEGAFDEEDLKIAAAYHFNLVVHNDYQLALIRQLPHDKQIDI 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG NRLG S+ N + +SH A AD + Q Sbjct: 120 HLKINTGMNRLGFSINAVNKVYKQLKNDVRINEIVFMSHFANADKTNGTDGQYQEI---E 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEARI 242 + + S+A+S+ ++ H RPGI LYG T K ++ V+T + + Sbjct: 177 KLMNDFNEPFSIANSAALISDNKTHADWVRPGIMLYGATPFDFSQKIPDLKPVMTLRSEV 236 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I I++ G+ V YG +D IA A GYADGYP G I Sbjct: 237 ISIQEIKKGQGVGYGEDFIADKDMRIATVACGYADGYPRHA-----------PTGTPVVI 285 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +G+++MDM DITD ++ G ++++G + +D+VA + T Y+LL I Sbjct: 286 DGIKTKTVGRVSMDMLAVDITDLGNVNYGSMVELWGEQLSVDEVANNAKTVGYELLCAIS 345 Query: 363 --TRYA 366 +R Sbjct: 346 SASRVP 351 >gi|302326590|gb|ADL25791.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 434 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++I+L AL NN + + + + VK ++YG G + A G V Sbjct: 42 RPNWIEINLDALCNNIQFIRSQIPASTKILLPVKADSYGHGSLACSFAAKFGGADYLGVA 101 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 + EG+ LR Y I VL P + L I+ + + + + G Sbjct: 102 HISEGMLLRQYGMDLPILVLGPCTPSDFAYFVEYQLTAAITDIRTAMAFDQFLGETGTEC 161 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +DTG NR G ++ + + + K + + +HLA AD P + +Q++RF Sbjct: 162 KAHLAIDTGMNRYGFDAEDFNN-IRAALSLKHLKFEGMFTHLATADMPGNPKTEIQIQRF 220 Query: 183 RTLIS--HYKGIEASLAS---SSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTV 235 L+ +G+ + S+G L P HF + RPG++LYG I + P++ V Sbjct: 221 TRLVDVLEAEGLRPEICHCSSSAGTLTHPESHFDMVRPGLTLYGYNCMGAIPTTLPIKPV 280 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ I + GE VSYGG + + IA AIGY DGY + Sbjct: 281 MKIKSTIRHVHDVKPGETVSYGGYWAAQQLTRIATIAIGYGDGYLRG-----------EY 329 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G FI+G + PILG++ MD TM D++ ++VG+ + + + I ++ VA Sbjct: 330 NKGFVFIRGQLCPILGRVCMDATMVDVSHIPDVQVGETVDVVNGELDFRISMESVAEEHH 389 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++ R+ R + Y Sbjct: 390 TIPYEITSRVARRLYRKY 407 >gi|189501096|ref|YP_001960566.1| alanine racemase [Chlorobium phaeobacteroides BS1] gi|189496537|gb|ACE05085.1| alanine racemase [Chlorobium phaeobacteroides BS1] Length = 371 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 160/382 (41%), Gaps = 25/382 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M I + L++N+ +++ + G+ R AVVK NAYG + L GV+D Sbjct: 1 MAGENLTSAIISSSNLEHNYRLTLDRIPGHCRIMAVVKANAYGHDAAGTSKILERLGVRD 60 Query: 60 FFVTSVEEGVKLRL---YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 F V ++ E LR + + I P + ++ I L + Sbjct: 61 FGVANIAEAASLRKQLTVSGHSEILAFSSPLPDHIARYLEHDIAATICDFNMLRAAESIA 120 Query: 117 SC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 S V +++DTG RLG + + A + +LS I +H A + Sbjct: 121 SAHNVPLKVHVKIDTGMGRLGTTPENAFQLLEAAEKSPHLRLSGIYTHFAQS-TSRDAFT 179 Query: 176 SVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228 Q + F + S ++ A+S GIL N F + RPGI LYG + Sbjct: 180 GRQRDLFTQICSEFEHRMQRTFCKHAANSGGILCHDNAFFDMVRPGIMLYGYFPDDSVKG 239 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V+ +++ I++ AG +SY IA + GYADGYP TLS Sbjct: 240 RADLKPVMLLSTKVMFIKEVEAGTTISYNRTWTAPSRRRIATLSAGYADGYPRTLSNR-- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVA 347 I+G P +G ITMD M D+ + + VGD +F G I D+A Sbjct: 298 ---------TTVSIRGKTFPQVGTITMDQFMVDLGNDRDVRVGDDALLFGGEGISAADLA 348 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 L +GT +Y+LL + +R + + Sbjct: 349 LTAGTISYELLCAVSSRVRRVF 370 >gi|331005749|ref|ZP_08329109.1| Alanine racemase [gamma proteobacterium IMCC1989] gi|330420438|gb|EGG94744.1| Alanine racemase [gamma proteobacterium IMCC1989] Length = 375 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 187/374 (50%), Gaps = 26/374 (6%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL+AL +NW + + + R AAVVK NAYGLG +A L+ G + FFV +++E Sbjct: 7 LTIDLSALVDNWKLLQQKVAPSTRCAAVVKANAYGLGIAPVAKVLFANGCRVFFVATLDE 66 Query: 68 GVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCG 119 G++LR I V G+ EK + + S + + Sbjct: 67 GIELRTLLAKSDCEIIVFGGLFYDTEKSLCSAAWLHYSLIPVLYSVEHISRWLLFSSNVQ 126 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P ++VDTG +R+GLS+ E + + Q S I+SH ACAD +N Q+ Sbjct: 127 KVLPSVVKVDTGMHRMGLSVGEFNEQLLSDV-MGRLQPSYIMSHFACADKSEHPLNRDQI 185 Query: 180 ERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F + S I+ S+ +S+GI L + + L RPGI+LYGG +K +PM+ V Sbjct: 186 MAFDDCLIKIKSRLPDIQVSMCNSAGIFLDGDIFYDLVRPGIALYGGNPSPSKPNPMRPV 245 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 V ++ ++ +G+ V YG +++ +A+ + GYADG LS Sbjct: 246 VKLTLGVMQLKVVASGDSVGYGASYIAQKETRLAIVSGGYADGLHRALSN---------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G + KG VPI+G+++MD +FD+T+ + I++ G +DD+A A+GT Y Sbjct: 296 -AGFAYCKGQKVPIVGRVSMDTMVFDVTNVPGEDP-AMIEVLGECQTVDDLAQAAGTIAY 353 Query: 356 DLLVRIGTRYAKFY 369 ++L +G+R+ + Y Sbjct: 354 EILTSLGSRFQRNY 367 >gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] Length = 833 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 150/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + + +VK +AYG G +IA L V V +E Sbjct: 475 LEVNLGAMIANLNYYRSRLRPDTKMVCMVKASAYGAGSYEIAKTLQEHHVDFLAVAVADE 534 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR A I ++ K +FD L P + S L K + P Sbjct: 535 GSELRKAGITASIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 593 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +++DTG +RLG + ++ + + SH +D Q+E F Sbjct: 594 IKLDTGMHRLGFAAKDMPRLIERLKGQNAVIARSVFSHFVGSDAAQFDAFTRGQIEMFEA 653 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + +S+GI P F + R GI LYG + N + T + Sbjct: 654 ASMQLQEAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVSPIDNSIINNVS--TLK 711 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + LTR+S IA IGYADG L Sbjct: 712 TTILQIRDVPQEDTVGYSRKGHLTRNSRIAALPIGYADGLNRHLGNGH----------AY 761 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD + GD ++IFG + + ++ T Y++L Sbjct: 762 CLVNGQRAPYVGNICMDVCMIDVTDI-DCKEGDAVEIFGDHLPITVLSDILETIPYEVLT 820 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 821 SISTRVKRIY 830 >gi|323187415|gb|EFZ72724.1| alanine racemase [Escherichia coli RN587/1] Length = 356 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SLA+S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLANSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas endodontalis ATCC 35406] gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas endodontalis ATCC 35406] Length = 827 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 157/373 (42%), Gaps = 23/373 (6%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L++DL A+ +N L + A+VK YG+G ++A L V V Sbjct: 465 TTLEVDLDAVAHNLQYYRSKLPQGTQCIAMVKAQGYGVGAYEVAKKLDQMHVGALAVAVA 524 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHP 123 +EG +LR + I V+ P + + +L PV+ S L + + + Sbjct: 525 DEGRELRSQGILSPILVMNP-EPTAFDTLLEWHLEPVVFSWKLLRALANKIDKQGFDNIG 583 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERF 182 ++VDTG +RLG E + L + I +HLA AD P QLE F Sbjct: 584 VHIEVDTGMHRLGFRPDEIPELARFFAQSHLLRARSIFTHLAAADMPEEDAFTRNQLEVF 643 Query: 183 RTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 RT + I +++G+ P Y F R GI LYG + ++K + V Sbjct: 644 RTTADQFSEIAGYRPLYHALNTAGVERFPQYAFDCVRLGIGLYGISPSMDKHL--EPAVR 701 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ E + YG + LT+ I + IGYADGY +S Sbjct: 702 LRTTLLQKSYISGDETIGYGRRGHLTQGGEIGIIPIGYADGYSRRMSCGR---------- 751 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356 G + G PI+G + MD M D++ + GD + +FG + +++D+A A T Y+ Sbjct: 752 GWVVVHGKRCPIVGNVCMDTCMIDLSQCPEAQEGDEVILFGDKEARIEDLARAIDTIPYE 811 Query: 357 LLVRIGTRYAKFY 369 L+ + R + Y Sbjct: 812 LIADLAPRVRRVY 824 >gi|77463017|ref|YP_352521.1| alanine racemase [Rhodobacter sphaeroides 2.4.1] gi|123592286|sp|Q3J3L4|ALR_RHOS4 RecName: Full=Alanine racemase gi|77387435|gb|ABA78620.1| alanine racemase [Rhodobacter sphaeroides 2.4.1] Length = 349 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 189/365 (51%), Gaps = 26/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L IDL A+ NW +++ + + + +T AVVK ++YGLG K+A AL AG + FFV + Sbjct: 4 ATLTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATC 63 Query: 66 EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EEG +R +I V G G +I D +L P+++S+ Q ++ P+ Sbjct: 64 EEGADVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIDQ---LTRHFEALGGQPF 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 LQ+D+G NRLGL E + L++SHLAC+DDP +N+ QL FR Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVAGFALEA---GPELLMSHLACSDDPDHPMNAEQLGAFRA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G+ SL+++ GILLGP +HF+LTRPGI LYGG N + VV +I Sbjct: 178 MTDG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFENA----RPVVRLSLPVIQ 232 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ GE V Y S IA A GYADG P TLS + ++ V Sbjct: 233 VREVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLSSRATLYAGRV---------- 282 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+++MD+ D++ + + I GP DD+A +GT Y++L +G R Sbjct: 283 -PCPLVGRVSMDLITVDVSHLPEVPE--TLDILGPHQTPDDLADTAGTIGYEILTSLGRR 339 Query: 365 YAKFY 369 Y + Y Sbjct: 340 YQRRY 344 >gi|323964681|gb|EGB60152.1| alanine racemase [Escherichia coli M863] gi|327253872|gb|EGE65501.1| alanine racemase [Escherichia coli STEC_7v] Length = 356 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGIAGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYAARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|262183853|ref|ZP_06043274.1| alanine racemase [Corynebacterium aurimucosum ATCC 700975] Length = 367 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 21/371 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ +DL A+ +N + AR VVK +AY G E+ AP + AG F V ++ Sbjct: 3 MLKTTVDLNAIAHNVARVKEAVAPARLMCVVKADAYAHGIERCAPVMAQAGADAFGVATL 62 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E V LR I ++ I S+ L++ Sbjct: 63 AEAVALRKVIDNLPIAAWLWEPTEDLAPALAADIQIGIPSL---AHAQALIAAETPTEAF 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT- 184 + V+TG +R G+ + + + ++SH ACAD+P N Q FR Sbjct: 120 VMVETGMHRSGVDKHVWEETFRLLADAPHITVLGLMSHFACADEPEHPHNDHQESEFRQA 179 Query: 185 -LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 ++ G+E LA+S L P+ F+ R G++LYG H ++ +T EA Sbjct: 180 LALAREVGLECPLNHLANSPAALTRPSARFEQVRVGLALYGLEPVAGLDHGLEPAMTWEA 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++ ++ AGE YG + +A ++GYADG P G + Sbjct: 240 SVVAVKPISAGESTCYGLTWTAESERELATVSVGYADGLPRAFQGAL-----------QV 288 Query: 301 FIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDVALASGTTNYDLL 358 I G + P +G++ MD + D+ + + GD IFG + +A A+GT NY+++ Sbjct: 289 GIGGELYPQVGRVCMDQIVVDLGSNPHGVRAGDTAVIFGRGGMSATGLAEAAGTINYEVV 348 Query: 359 VRIGTRYAKFY 369 R R + Y Sbjct: 349 CRPTGRTERTY 359 >gi|240140752|ref|YP_002965232.1| putative alanine racemase (alr-like) [Methylobacterium extorquens AM1] gi|240010729|gb|ACS41955.1| putative alanine racemase (alr-like) [Methylobacterium extorquens AM1] Length = 342 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 177/351 (50%), Gaps = 14/351 (3%) Query: 19 NWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78 NW ++ A + A AVVK +AYG G +APAL+ AG + FFV + EG+ R P+A Sbjct: 4 NWRALGACAPQAECGAVVKADAYGCGLAAVAPALWRAGCRTFFVAHLSEGIAARKILPEA 63 Query: 79 RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS 138 ++VL G+ PG + L PV+ +L +++ M + DTG NRLGL Sbjct: 64 ALYVLNGLPPGHAEAFRAHRLRPVLGDAQELAEWAEAMQGAGPAALHV--DTGMNRLGLC 121 Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198 + EAL + + G ++SHL A+ P +N+ Q F + + + + ASLA+ Sbjct: 122 VAEALALAGDPVIARAGIDL-VMSHLVSAELPDDPLNARQAADFARVRAAFPQMRASLAN 180 Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGG 258 SSG L + L RPG +L+GG + + M+ VV EA I+ +R AG Y Sbjct: 181 SSGTCLANDARHDLLRPGYALFGGNPDPGQPNSMRPVVRLEATILQVRNVEAGATCGYNA 240 Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318 + + +A ++GYADGYP + S G + G PI+G I+MD+ Sbjct: 241 RWQAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVPCPIVGLISMDLI 289 Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D+TD+ G + G + +D V A+GT Y++L +G+RY + Y Sbjct: 290 ILDVTDATQARRGGTATLIGDSLDIDTVGQAAGTIGYEILTSLGSRYVRDY 340 >gi|332297980|ref|YP_004439902.1| Alanine racemase [Treponema brennaborense DSM 12168] gi|332181083|gb|AEE16771.1| Alanine racemase [Treponema brennaborense DSM 12168] Length = 390 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 153/383 (39%), Gaps = 35/383 (9%) Query: 11 IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L L++N ++ + R VK +AYG G + A GV V +V EG+ Sbjct: 17 IYLDNLRHNLAAIRTCIKPETRICVPVKADAYGHGAVQTARTAQECGVSYLAVAAVSEGI 76 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128 +LR + I +L P + I L+P + + S+ P L++ Sbjct: 77 ELREAGIELPILLLSVPQPEEFAEIVSYALMPAVFDAEFIDLLSETAVRMKRRLPVHLKI 136 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLERFRTL 185 DTG R+G +EA +L+ + +H A AD Q+ERF Sbjct: 137 DTGMGRIGCPAEEAARLAERISKSAALELAGVFTHFAAADSLVPADEAYTHGQIERFVQA 196 Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD---------KINKSHP 231 + + ASS+ IL P F + RPGI +YG + + Sbjct: 197 VDSIRDRHINPGIVHCASSAAILQYPEAQFDMVRPGIIVYGYYPGDITEDYLQRAGRPLH 256 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ ++I I+ AGE +SYG D I V IGYADG Sbjct: 257 LKPLLEVRSKISAIKPIRAGESISYGRTWTADSDGEIGVIPIGYADGIIRRF-------- 308 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDV 346 + + G P+ G+I MD M D+ + + D IFGP +D+ Sbjct: 309 ---APDIRISVNGRAYPVRGRICMDQCMIDLGKNSGVSRWDDAIIFGPKENGAACSAEDL 365 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A A+GT +Y++L I R + Y Sbjct: 366 AQATGTISYEILCGINKRVPRVY 388 >gi|307709632|ref|ZP_07646084.1| alanine racemase [Streptococcus mitis SK564] gi|307619530|gb|EFN98654.1| alanine racemase [Streptococcus mitis SK564] Length = 367 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 159/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGLSKKILILGVSDIEAVALAKEYDITLTVAGLEWIQALLVKEADLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + + I +H A AD+ S ++QLERF Sbjct: 125 RVHLKIDSGMGRIGFREAGEANKAQDLLQQHGAHVEGIFTHFATADEESDDYFNIQLERF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + + +S+ L F R G ++YG ++ + ++ +T Sbjct: 185 KTILASMKEVPEMVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGTNGDKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|218553745|ref|YP_002386658.1| alanine racemase [Escherichia coli IAI1] gi|218360513|emb|CAQ98069.1| alanine racemase 2, PLP-binding [Escherichia coli IAI1] Length = 356 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 161/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + +I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGQILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGAVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|168787693|ref|ZP_02812700.1| alanine racemase [Escherichia coli O157:H7 str. EC869] gi|261224927|ref|ZP_05939208.1| alanine racemase 2, PLP-binding protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257216|ref|ZP_05949749.1| alanine racemase 2, PLP-binding protein [Escherichia coli O157:H7 str. FRIK966] gi|189372430|gb|EDU90846.1| alanine racemase [Escherichia coli O157:H7 str. EC869] Length = 356 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I L G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSVL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ ++D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|253989451|ref|YP_003040807.1| alanine racemase, catabolic [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780901|emb|CAQ84063.1| alanine racemase, catabolic [Photorhabdus asymbiotica] Length = 357 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 151/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L AL+NN + GN++ AVVK NAYG G I P L F + Sbjct: 3 RPISATIHLDALENNLAVIRNKVGNSKIWAVVKANAYGHGLRCIWPHLDQ--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E + LR Q I +L G ++ I D + + + + Sbjct: 61 FNEAILLREQGWQRPILLLEGFFQPEDLRIIDEYQLTTVVHSHWQLKAIEAANFSHPINI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + + N + ++SH A AD + QL Sbjct: 121 YLKLNSGMNRLGFPADQYREVLSLAKNIRQIGQITLMSHFANAD--KKIGVTEQLNVID- 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 +S I LA+S L P H R GI+LYG + ++ V++ ++ Sbjct: 178 SVSQGLNISQCLANSGACLWYPQTHRDWVRTGIALYGASPSGKWEDIADVGLKAVMSLKS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG+ + YG + + A GYADGYP G Sbjct: 238 EIIAVQNLKAGDKIGYGSKYTAPGPMRVGTVACGYADGYPR-----------CAMTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +LG I+MDM D+T ++G ++++G ++ +DDVA GT Y+LL Sbjct: 287 IVNGVRTQMLGAISMDMMTVDLTPCPQAQIGSPVELWGQNLPVDDVAGVPGTIGYELLCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAERVP 352 >gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] Length = 826 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + ++K +AYG G +IA L + V V +E Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 GV LR + I ++ K +FD +L P + S + + P Sbjct: 527 GVTLRKNGITSNIMIMNPEMTS-FKTLFDYDLEPEVYSFRLMDALVKAAQKEGITGFPVH 585 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG Q + + + + SH +D D ++ Q F Sbjct: 586 IKLDTGMHRLGFDPQKDMDELIKRLKKQNAIIPRSVFSHFVGSDADNFDEFSAHQFALFD 645 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +SSGI P + R G+ LYG + NK+ + T Sbjct: 646 EGSKKLQAAFSHKIIRHMDNSSGIEHFPERQMDMCRLGLGLYGINPRTNKTINNIS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + + DS+IA IGYADG L Sbjct: 704 KTTILQLRNVPAGDTVGYSRKGTIDHDSVIAAIPIGYADGLNRHLGNRHC---------- 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 754 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDTLDTIPYEVL 812 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 813 TTISNRVKRVY 823 >gi|299769496|ref|YP_003731522.1| alanine racemase [Acinetobacter sp. DR1] gi|298699584|gb|ADI90149.1| alanine racemase [Acinetobacter sp. DR1] Length = 356 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ N++ ++VK N YG G + AL + F V ++EG++ Sbjct: 8 IDRNALQYNLNRVKQLAANSKIVSMVKANGYGHGIKDCLAALNAS--DAFGVACLQEGLE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQ 127 +R Q + ++ G+ E I + VI Q + K ++ ++ Sbjct: 66 IRELGFQQSVTLIEGVFSEDEMPIAIEQKFECVIHHQQQFEWLIKYKQKYIAQGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E ++ + + + A D +N Q ++F + Sbjct: 126 LNSGMNRLGFKVTEIIEVIKTLKAEGFTCVLAMHFANADVD---HPLNEQQKQQFLQVKQ 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + + AS +S+ I P HF RPGI LYG + +K ++ V+T A +I Sbjct: 183 ACEPVLASCCNSAAIYKWPELHFDYVRPGIMLYGASPFADKTVHDLDLKPVMTFSAEVIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + E V YG + IA+ +IGY DGYP I Sbjct: 243 LNHIQTNEHVGYGSTFCAKQAMDIAIVSIGYGDGYPRAY-----------IKQNYVAIDK 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM D+T + +++G ++++G +DDVA A+GT Y+LL R+ R Sbjct: 292 QLCAVVGRVSMDMLAIDVTG-MQVKLGTPVELWGAHRLVDDVADANGTIGYELLCRLSNR 350 Query: 365 YAK 367 + Sbjct: 351 PTR 353 >gi|19111844|ref|NP_595052.1| alanine racemase Alr2 [Schizosaccharomyces pombe 972h-] gi|12229663|sp|Q9P5N3|ALR2_SCHPO RecName: Full=Putative alanine racemase C359.02 gi|7838267|emb|CAB91571.1| alanine racemase Alr2 [Schizosaccharomyces pombe] Length = 370 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 152/380 (40%), Gaps = 26/380 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQD 59 R IDL A+ N++ + L + +A ++K NAYG G ++A L + Sbjct: 2 RGARAVIDLRAIGYNYNLIRELLDEKNPDAHILCILKANAYGHGAVEVAQFLAKYCSAEG 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V S+EE ++LRL Q RI +L G E + D + + Sbjct: 62 FGVASIEEALELRLSGIQNRILLLEGFFTDEDELSLIDKYNFSITIHCEEQLKSFMNYPF 121 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSV 177 L++D+G NRLG + E D N K + +H A AD P Sbjct: 122 KKPVEVHLKLDSGMNRLGFTPAEYADKYRLLKNHKNVSGIVKATHFAFADIPEKSEYTLK 181 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD------KINKSHP 231 Q F ++ + H R G LYG P Sbjct: 182 QWRIFEKAAGCLPDPLSAGGGVIVVGWLNTIHMDWLRTGSMLYGLDPYDLDAKAPELPKP 241 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + + + I+ ++ + + YGG TRDSLI V AIGY DG+P Sbjct: 242 LIPAMKLMSTIVCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFP----------- 290 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALAS 350 V G I G VP +GK+ MDM D+TD ++ GD + ++G P++ +++V+ S Sbjct: 291 -QVRNGCPVIINGKRVPTVGKVCMDMLAIDVTDVPDVKRGDDVVLWGNPELTIEEVSTFS 349 Query: 351 GTTNYDLLVRIGTRYAKFYT 370 ++++ + R YT Sbjct: 350 NENPFEIITGLTRRVPLQYT 369 >gi|315651755|ref|ZP_07904760.1| alanine racemase [Eubacterium saburreum DSM 3986] gi|315486010|gb|EFU76387.1| alanine racemase [Eubacterium saburreum DSM 3986] Length = 392 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 170/384 (44%), Gaps = 27/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S + K+DL A+K+N L + + AAVVK + YG G ++ + + V Sbjct: 1 MDSYKRAYAKVDLDAIKHNLTVTKKSLKKDMKLAAVVKADGYGHGSVPVSLYIEDI-VDF 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F V ++EEG+ LR + I +L I K ++ + ++ Q ++ Sbjct: 60 FCVATLEEGINLRYHGITKPILILACIPRNSYKESIVFDIRESVFTLEQAEKINEEAKQM 119 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G + +DTG NR+G +++ D + + ++ + +H AD+ Sbjct: 120 GKKAAIHIAIDTGMNRIGFKPTKKSADIIKEINDMENIEIEGVFTHFHSADESDLTSAKE 179 Query: 178 QLERFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP- 231 Q F + H GI+ + ++S+GIL F + R GI++YG + Sbjct: 180 QNLLFTNFLHTLHDMGIDPKIAHASNSAGILNRIGTEFDMVRCGITMYGIAPSGEVNLNG 239 Query: 232 --MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ + + I++ AGE VSYG +D +A +IGYADGYP LS Sbjct: 240 LDYRPALSIYSTVTYIKQINAGECVSYGATFVADKDMRVATISIGYADGYPRDLSN---- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G I G ILGKI MD T+ D++ + ++GD + I G I +D+ Sbjct: 296 -------KGYVLIHGVRCNILGKICMDQTIVDVSAVDNAKIGDRVVILGESEGNKITVDE 348 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 + S T +Y+ + I R + Y Sbjct: 349 LTGDSNTFSYEFICGINKRVPRLY 372 >gi|332557893|ref|ZP_08412215.1| alanine racemase [Rhodobacter sphaeroides WS8N] gi|332275605|gb|EGJ20920.1| alanine racemase [Rhodobacter sphaeroides WS8N] Length = 349 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 188/365 (51%), Gaps = 26/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L IDL A+ NW +++ + + + +T AVVK ++YGLG K+A AL AG + FFV + Sbjct: 4 ATLTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATC 63 Query: 66 EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EEG +R +I V G G +I D +L P+++S+ Q ++ P+ Sbjct: 64 EEGADVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIDQ---LTRHFEALGGQPF 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 LQ+D+G NRLGL E + L++SHLAC+DDP +NS QL FR Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVAGFALEA---GPELLMSHLACSDDPDHPMNSEQLGAFRA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G+ SL+++ GILLGP +HF+LTRPGI LYGG + VV +I Sbjct: 178 MTDG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFEEA----RPVVRLSLPVIQ 232 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ GE V Y S IA A GYADG P TLS + ++ V Sbjct: 233 VREVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLSSRATLYAGRV---------- 282 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+++MD+ D++ + + I GP DD+A +GT Y++L +G R Sbjct: 283 -PCPLVGRVSMDLITVDVSHLPEVPE--TLDILGPHQTPDDLADTAGTIGYEILTSLGRR 339 Query: 365 YAKFY 369 Y + Y Sbjct: 340 YQRRY 344 >gi|167572513|ref|ZP_02365387.1| alanine racemase [Burkholderia oklahomensis C6786] Length = 374 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+ N + + +R +VVK NAYG E+I PAL + + Sbjct: 3 RPIVARIHPDAVARNLAIVRQKAPRSRIWSVVKANAYGHDIERIYPALAD--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R I +L GI + I D + + V + Sbjct: 61 LDEAVRVRELGWTKPILLLEGIFEAADVEIADRHRLTVAVHGDEQLTLLASAKTTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ Q+ F Sbjct: 121 QLKMNSGMNRLGYRPGAFRAAWERAAAAPSIGDIALMMHFANADEGE---IDWQMRAFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 G E +L++S+ +L P H RPG LYG + H P+Q +T + Sbjct: 178 ATDGLPG-ERTLSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHLADVPLQPAMTVTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ AGE V YG + R+ I V A GYADGYP G Sbjct: 237 KIIGVQTLAAGETVGYGRRFTAEREMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + VG ++++G +++DDVA A+GT Y+LL Sbjct: 286 AVDGVRTQVVGRVSMDMLTVDLTPCPNAGVGSAVELWGAQVRVDDVAEAAGTIGYELLCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|320195830|gb|EFW70455.1| Alanine racemase, catabolic [Escherichia coli WV_060327] Length = 356 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|261417347|ref|YP_003251030.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373803|gb|ACX76548.1| alanine racemase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 407 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++I+L AL NN + + + + VK ++YG G + A G V Sbjct: 15 RPNWIEINLDALCNNIQFIRSQIPASTKILLPVKADSYGHGSLACSFAAKFGGADYLGVA 74 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 + EG+ LR Y I VL P + L I+ + + + + G Sbjct: 75 HISEGMLLRQYGMDLPILVLGPCTPSDFAYFVEYQLTAAITDIRTAMAFDQFLGETGTEC 134 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +DTG NR G ++ + + + K + + +HLA AD P + +Q++RF Sbjct: 135 KAHLAIDTGMNRYGFDAEDFNN-IRAALSLKHLKFEGMFTHLATADMPGNPKTEIQIQRF 193 Query: 183 RTLIS--HYKGIEASLAS---SSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTV 235 L+ +G+ + S+G L P HF + RPG++LYG I + P++ V Sbjct: 194 TRLVDVLEAEGLRPEICHCSSSAGTLTHPESHFDMVRPGLTLYGYNCMGAIPTTLPIKPV 253 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ I + GE VSYGG + + IA AIGY DGY + Sbjct: 254 MKIKSTIRHVHDVKPGETVSYGGYWAAQQLTRIATIAIGYGDGYLRG-----------EY 302 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 G FI+G + PILG++ MD TM D++ ++VG+ + + + I ++ VA Sbjct: 303 NKGFVFIRGQLCPILGRVCMDATMVDVSHIPDVQVGETVDVVNGELDFRISMESVAEEHH 362 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++ R+ R + Y Sbjct: 363 TIPYEITSRVARRLYRKY 380 >gi|282917419|ref|ZP_06325172.1| alanine racemase [Staphylococcus aureus subsp. aureus D139] gi|282318621|gb|EFB48978.1| alanine racemase [Staphylococcus aureus subsp. aureus D139] Length = 382 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 92/371 (24%), Positives = 154/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPVKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q + F+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYQCFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKIKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 NGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|126461891|ref|YP_001043005.1| alanine racemase [Rhodobacter sphaeroides ATCC 17029] gi|221638874|ref|YP_002525136.1| Alanine racemase [Rhodobacter sphaeroides KD131] gi|226711057|sp|A3PIR7|ALR_RHOS1 RecName: Full=Alanine racemase gi|254802372|sp|B9KQC8|ALR_RHOSK RecName: Full=Alanine racemase gi|126103555|gb|ABN76233.1| alanine racemase [Rhodobacter sphaeroides ATCC 17029] gi|221159655|gb|ACM00635.1| Alanine racemase [Rhodobacter sphaeroides KD131] Length = 349 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 188/365 (51%), Gaps = 26/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L IDL A+ NW +++ + + + +T AVVK ++YGLG K+A AL AG + FFV + Sbjct: 4 ATLTIDLDAIAANWRALDQMTASDCQTGAVVKADSYGLGAAKVAHALARAGARRFFVATC 63 Query: 66 EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EEG +R +I V G G +I D +L P+++S+ Q ++ P+ Sbjct: 64 EEGADVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIDQ---LTRHFEALGGQPF 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 LQ+D+G NRLGL E + L++SHLAC+DDP +N+ QL FR Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVAGFALEA---GPELLMSHLACSDDPDHPMNAEQLGAFRA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G+ SL+++ GILLGP +HF+LTRPGI LYGG + VV +I Sbjct: 178 MTDG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFEEA----RPVVRLSLPVIQ 232 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ GE V Y S IA A GYADG P TLS + ++ V Sbjct: 233 VREVEIGEPVGYSNTWTAEHTSTIATVAAGYADGLPRTLSSRATLYAGRV---------- 282 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+++MD+ D++ + + I GP DD+A +GT Y++L +G R Sbjct: 283 -PCPLVGRVSMDLITVDVSHLPEVPE--TLDILGPHQTPDDLADTAGTIGYEILTSLGRR 339 Query: 365 YAKFY 369 Y + Y Sbjct: 340 YQRRY 344 >gi|209964879|ref|YP_002297794.1| alanine racemase [Rhodospirillum centenum SW] gi|209958345|gb|ACI98981.1| alanine racemase [Rhodospirillum centenum SW] Length = 384 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 188/369 (50%), Gaps = 20/369 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW + A A AVVK +AYGLG +A L G FFV E G Sbjct: 20 LVIDLGALAANWRDLAARVAPAECGAVVKADAYGLGAGPVARRLLAEGAHTFFVADTEAG 79 Query: 69 VKLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 + LR P+ RI VL+G+ PG + L+P ++++ L + ++ G P Sbjct: 80 MALRTVLPAMQPEPRIVVLHGVPPGAAPDLAAARLLPALNTLGDLERWRAEGQRRGAPLP 139 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG NRLGL+ E ++ ++ +SHLACAD P+ + QL RF Sbjct: 140 CFVHIDTGMNRLGLTAAELDTLAGDADRLLAGVRVESWMSHLACADHPADPMTKTQLGRF 199 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 R ++ ASLA+S+GI G +YHF L RPGI+LYG +PM+ VV ARI Sbjct: 200 RAALARLPAARASLANSAGIFHGRDYHFDLVRPGIALYGPNPAPWTENPMRPVVRVFARI 259 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 +R AG+ V Y ++ R IA +GYADGYP LSG G Sbjct: 260 HQVRPVSAGDTVGYDATHRIGRPGRIAALGMGYADGYPWALSGR-----------GAALF 308 Query: 303 KG-YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 G Y P++G+++MD+ D+TD + G + ++ GP +D A +GT Y++L Sbjct: 309 GGAYRAPLVGRVSMDLLTADVTDVPEQFLAEGGWAEVIGPHRPVDTAATEAGTIGYEVLT 368 Query: 360 RIGTRYAKF 368 R+G+RY + Sbjct: 369 RLGSRYHRV 377 >gi|206563057|ref|YP_002233820.1| alanine racemase [Burkholderia cenocepacia J2315] gi|198039097|emb|CAR55060.1| alanine racemase, catabolic [Burkholderia cenocepacia J2315] Length = 373 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + +R AVVK NAYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTVAPSRVWAVVKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L G+ + + D + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGVFEPADVELADRYRLTVAVHCDEQLDLLIAAKPRQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ QLE+F Sbjct: 121 QLKMNSGMNRLGYRPAAFRAAWERAASAPSIGKITLMMHFANADEGE---VDWQLEQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S+++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 TTAGIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLVAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPEETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|306829934|ref|ZP_07463121.1| alanine racemase [Streptococcus mitis ATCC 6249] gi|304427945|gb|EFM31038.1| alanine racemase [Streptococcus mitis ATCC 6249] Length = 367 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 158/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRKNIQQMGNHIPKGTLKWAVVKANAYGHGAVAVATAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + D ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGVSKKILILGVSEIEAIDLAKDYDITLTVAGLEWIRVLLATGADLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + ++ ++ I +H A AD+ S + QLERF Sbjct: 125 SVHLKIDSGMGRIGFREASEAEEAQDLLKQEGARVEGIFTHFATADEASDTYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T++S K + ++S+ L F R G ++YG ++ + + ++ Sbjct: 185 KTILSSMKEVPELIHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQTDSEQIIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGSDGDKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|317048429|ref|YP_004116077.1| alanine racemase [Pantoea sp. At-9b] gi|316950046|gb|ADU69521.1| alanine racemase [Pantoea sp. At-9b] Length = 356 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 156/367 (42%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL++N + + +R +VVK NAYG G ++ +L F + Sbjct: 2 SRPIVATINQQALRHNLAVVRQAAPASRIWSVVKANAYGHGIRRVWQSLAE--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G ++ + D + Sbjct: 60 NMEEAILLREQGWKKPILLLEGFFHAEDLQLIDRYRLTTSVHSNWQIQALAQAQLSAPID 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG ++ +++H A A++P + ++ Sbjct: 120 IYVKVNSGMNRLGFRPEQVNAAWQALRGLANVGEMTLMAHFADAENPQGIIEPMKRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + N S + V+T Sbjct: 177 ERAAEGLNCPRSLSNSAATLWHPEAHFDWVRPGIVLYGASPSGNWQDIASTGLTPVMTLT 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I++ AG+ V YG + + I V A GYADGYP G Sbjct: 237 SEIIGIQQLQAGDGVGYGYRYHASAAQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G M +G I+MDM M D+ +G ++++G +K+DDVA A+GT Y+L+ Sbjct: 286 VSVDGVMTRTVGAISMDMIMIDLEPCPQAGIGSKVELWGEQVKIDDVAKAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|225020515|ref|ZP_03709707.1| hypothetical protein CORMATOL_00522 [Corynebacterium matruchotii ATCC 33806] gi|224946904|gb|EEG28113.1| hypothetical protein CORMATOL_00522 [Corynebacterium matruchotii ATCC 33806] Length = 378 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 156/383 (40%), Gaps = 25/383 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M L IDL A+ N + L A+ VVK + Y G +A + G Sbjct: 1 MVVVNLLETVIDLDAIATNTRILKNLVQPAQLMCVVKADGYNHGAIPVARTVLANGADQL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG- 119 V ++ E ++LR + A I D N+ + S+ K + Sbjct: 61 GVATLAEALELREASITAPILCWIWSPEQDFAAALDANIHLAVVSMAHAQAIVKYAAGKP 120 Query: 120 -VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK----KLGQLSLIISHLACADDPSSHV 174 +++DTG +R G+ + + +++ ++SHLACAD+P + Sbjct: 121 EKLVQTTIKIDTGLHRSGVDESQWEAVFTLLKDAGTATGNIEVTGVMSHLACADEPGNPA 180 Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINK 228 N Q F I+ + + L++S +L P+++ ++ RPG+++YG + Sbjct: 181 NDTQAAAFNRAIALGRQLGLELSVNHLSNSPAVLTRPDFYHEMVRPGLAVYGYSPLADGN 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +Q ++ ++ +++ GE SY + + +AV GYADG P Sbjct: 241 DYGLQPAMSWVGKVTVVKPIEPGEGTSYNLTWRAAKPGYLAVIPAGYADGLPRRAQNHV- 299 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DIKLDDV 346 + I G+ P +G+I MD + D+ D+ ++ GD IFGP + ++ Sbjct: 300 ----------EVTIGGHRYPQVGRICMDQFVIDLGDNPHNVRPGDEAIIFGPGGMSATEL 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A NY ++ R + Y Sbjct: 350 ASRIQDINYAVICAPTGRTVRRY 372 >gi|331652220|ref|ZP_08353239.1| alanine racemase [Escherichia coli M718] gi|331050498|gb|EGI22556.1| alanine racemase [Escherichia coli M718] Length = 356 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 SLALRVP 352 >gi|262372192|ref|ZP_06065471.1| alanine racemase [Acinetobacter junii SH205] gi|262312217|gb|EEY93302.1| alanine racemase [Acinetobacter junii SH205] Length = 356 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 98/363 (26%), Positives = 164/363 (45%), Gaps = 23/363 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ +++ ++VK NAYG G + AL F V +EE + Sbjct: 8 IDSEALQYNLNRVKQLAPHSQIVSMVKANAYGHGVQDCLAALNA--TDAFGVACLEEALA 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIF---DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R I ++ G+ E + + +K + ++ Sbjct: 66 IRRLGYTQPITLIEGVFTEDEMEDVIQQKLECVVHRHEQVEWLIQNKEAYNALGLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + E + H + + + A D +N Q+++F + + Sbjct: 126 LNSGMNRLGFKINEIIAVIHQLKSLNFNCVLTMHFANADVD---HPLNEQQIQQFLEVKN 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIIL 244 + I AS +S+ I PN HF RPGI LYG T +K ++ V++ EA II Sbjct: 183 ACEPILASCCNSAAIYKYPNLHFDYVRPGIMLYGATPFADKDVNELDLKPVMSFEAEIIT 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + + AGE V YG T IA+ +IGY DGYP I Sbjct: 243 LNQIQAGESVGYGSTFTATNSMQIAIVSIGYGDGYPRAY-----------VKPNYVAIDK 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P++G+++MDM D T+ ++VG ++++G +DDVA A+GT Y+LL R+ R Sbjct: 292 QLTPVIGRVSMDMIAIDTTNL-QVKVGTKVELWGKTRLVDDVANANGTIGYELLCRLSNR 350 Query: 365 YAK 367 + Sbjct: 351 PQR 353 >gi|331701928|ref|YP_004398887.1| alanine racemase [Lactobacillus buchneri NRRL B-30929] gi|329129271|gb|AEB73824.1| Alanine racemase [Lactobacillus buchneri NRRL B-30929] Length = 374 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 141/381 (37%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ +DL A+ +N H + VVK + YG G ++A AG F V Sbjct: 7 RNAQVTVDLAAIYSNIHHAKQRLDDGDDLFQVVKADGYGHGAVQVAEIAEKAGATGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCGV 120 ++E ++LR + + VL P ++ N + I + Q + Sbjct: 67 ILDEALQLRQAGIRLPVLVLGITDPECAQLAASENISLTVGSIDWLNQAAKLLDTSAFKG 126 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178 L +DTG R+G + L N ++S I +H A AD P Q Sbjct: 127 RLNIHLALDTGMGRIGFQTADELKAAVGVLNAHSDRMSFEGIFTHFATADSPDDTYFKFQ 186 Query: 179 LERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPM 232 + F+ ++ + +A+S+ L + R GI+ YG + + Sbjct: 187 YQNFQDFMAVLDKRPKYVHVANSATSLWHKVCGGNMIRFGIAAYGLNPSGRDITQLPYQL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + I + G + YG D I +GYADG P + G Sbjct: 247 KPGLSVTSEIDFSKLVKKGRSIGYGATYTTDSDQWIGTVPVGYADGIPRAMQGFS----- 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 + G+ PI+G++ MD M + G + I G I DDVA Sbjct: 302 -------VLVDGHKCPIVGRVCMDQFMIRLPHDYP--YGTTVTIIGQSGDAQITADDVAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T +Y+++ + R + Y Sbjct: 353 YLHTISYEVICGLSPRLRRKY 373 >gi|330840033|ref|YP_004414613.1| Alanine racemase [Selenomonas sputigena ATCC 35185] gi|329747797|gb|AEC01154.1| Alanine racemase [Selenomonas sputigena ATCC 35185] Length = 372 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 158/381 (41%), Gaps = 25/381 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S + +I+L A+++N+ + AL G A+ AVVK NAYG G +A AG Sbjct: 2 SKRAVWAEINLGAIRHNYRVIGEALCGGAKLCAVVKANAYGHGALAVAKEAVAAGAAYLA 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-V 120 V ++ E +LR + VL I P + ++ ++++ S Sbjct: 62 VATLSEAAELRRAGIGTPLLVLGLIDPLEAAEAVSLDVTQTVANLALAKAISAEALAQEK 121 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + L +DTG R+G + +EA + +L SH A AD QL Sbjct: 122 TAKLHLAIDTGMGRIGCTSEEASALARDIAVLPNIELEGAFSHFAMADVRDKAHARGQLA 181 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN------KS 229 F + +A S+ IL P H + R GI YG ++ Sbjct: 182 LFLRATEAIEEAGVHLKLRHIAESAAILQMPEAHLDMVRAGIIQYGMYPSEEVARDVRET 241 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 P++ + +AR++ ++ G + YG R S IA +GYADGY LSG Sbjct: 242 SPLRPAMALKARVLFVKDVPEGFAIGYGCTWHAKRRSRIATLPLGYADGYIRALSG---- 297 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVAL 348 I G P++G+I MD M D+TD + G + +FG + D+VA Sbjct: 298 -------KAHVEILGKTAPVVGRICMDQCMIDVTDIERVAEGTEVTLFGSATLSADNVAA 350 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++ I +R + Y Sbjct: 351 WLGTINYEIPCLIASRVRRVY 371 >gi|306826747|ref|ZP_07460049.1| alanine racemase [Streptococcus pyogenes ATCC 10782] gi|304431036|gb|EFM34043.1| alanine racemase [Streptococcus pyogenes ATCC 10782] Length = 366 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 163/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + I+S+ + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAVANAITVTIASLDWIALARLEKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+GL + ++ +S + + I +H A AD+ + Sbjct: 120 ECQGLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL+ F+ LI+ + + +S+ + + F R GI YG ++ P+ Sbjct: 180 QLQFFKKLIAGLEDKPRLVHTSNSATSIWHSDTIFNAVRLGIVSYGLNPSGSDLSLPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E+ ++ ++ AG+ V YG + + IGYADG+ + G Sbjct: 240 QEALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G ++G+++MD + + + G + + G +I D+A Sbjct: 295 -------VLVDGQFCEMIGRVSMDQLTIRLPKAYPL--GTKVTLIGSNQQKNISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRIY 366 >gi|294793102|ref|ZP_06758248.1| alanine racemase [Veillonella sp. 6_1_27] gi|294794860|ref|ZP_06759995.1| alanine racemase [Veillonella sp. 3_1_44] gi|294454222|gb|EFG22596.1| alanine racemase [Veillonella sp. 3_1_44] gi|294456047|gb|EFG24411.1| alanine racemase [Veillonella sp. 6_1_27] Length = 374 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 169/382 (44%), Gaps = 25/382 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 ++ L I+ + ++ N + +L + + AV+K N YG G + G + Sbjct: 3 NTMRPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESL 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V EE V LR I++L P +++ DTN IP + L +K+ + Sbjct: 63 AVAIPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLESLNKVADNHD 122 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + A+ VDTG +R+G+ ++A++F + + ++ SH++ AD Q Sbjct: 123 MIIRVAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHSQT 182 Query: 180 ERFRTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HP 231 ++F ++ + LA+S+G+L + F RPGI YG ++ Sbjct: 183 QKFHRMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLG 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V++ + ++ ++ AGE + YG T IA +GYADGYP +LS Sbjct: 243 LKPVLSFHSEVVHVQHIPAGEGIGYGSTYITTEPMTIATIPVGYADGYPRSLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G I G P++G+I MD M + D+++++ GD + + G I ++A Sbjct: 298 ------GTVLIHGTRCPVVGRICMDQFMVSVPDTITVKPGDKVVLLGSQGHESISALEIA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 + T Y++ R + Y Sbjct: 352 ALASTIPYEIFCGFSERVPRQY 373 >gi|226310176|ref|YP_002770070.1| amino acid racemase [Brevibacillus brevis NBRC 100599] gi|226093124|dbj|BAH41566.1| probable amino acid racemase [Brevibacillus brevis NBRC 100599] Length = 574 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 168/381 (44%), Gaps = 31/381 (8%) Query: 6 FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I L L++N + L + AVVK AYG G +IA L G+ F V + Sbjct: 206 RAWADIHLPHLQHNVREIQQVLPKDCAMMAVVKAQAYGHGGWQIARFLNKLGIDHFAVAT 265 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++EG++LR + I VL E+ I + +V + L V P Sbjct: 266 IDEGIELRKKGVKGEILVLGYT---DERRIRQIARFKLTQTVVDDEYAQTLNGYNVKIPV 322 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLER 181 +++DTG RLG S + K L +HL+ AD + Q++R Sbjct: 323 HIKIDTGMGRLGESWEYTEKIAAMYRYKHLQVC-GTFTHLSVADSLEASDIAYTKNQIDR 381 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPM 232 F+ +I + + SS G+L + R GI+LYG DK+ S + Sbjct: 382 FQNVIEQLKEKGINPQKLHVQSSYGVLNYGELQYDYARMGIALYGMLSKQGDKVKTSIDL 441 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ +AR++ +++ G V YG +DS IA+ +IGYADG P LS Sbjct: 442 RPVLSLKARVVQVKQVEKGAPVGYGRAHTAQKDSKIAIVSIGYADGVPRMLS-------- 493 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 +G I+G PI+G + MD + DI+D ++ G+ + G +I +++A Sbjct: 494 --QVGATCLIRGKRRPIIGFVCMDQLIVDISDIEEVQRGEVVTFIGRDQEEEITAEEMAQ 551 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 + T +L+ R+G R + Y Sbjct: 552 SCKTITNELVSRLGERVKRVY 572 >gi|218549113|ref|YP_002382904.1| alanine racemase [Escherichia fergusonii ATCC 35469] gi|218356654|emb|CAQ89280.1| alanine racemase 2, PLP-binding [Escherichia fergusonii ATCC 35469] gi|324113955|gb|EGC07929.1| alanine racemase [Escherichia fergusonii B253] gi|325497535|gb|EGC95394.1| alanine racemase [Escherichia fergusonii ECD227] Length = 356 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 159/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL A F + + Sbjct: 3 RPIQASVDLQALKQNLAIVRRAAPDARVWSVVKANAYGHGIERIWNAL--ASTDGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E+ V LR + I +L G + ++D + + Sbjct: 61 IEDAVTLRERGWKGPILMLEGFFHADDLAVYDKYRLTTSVHSNWQLKALQNARLNAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V++G NRLG ++ ++SH A A+ VQ Sbjct: 121 YVKVNSGMNRLGFPPEKIPTVWQQLRGMSNVGEMTLMSHFADAE---HPEGIVQALEKVE 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 S SLA+S+ L P HF RPGI LYG + + + ++ V+T + Sbjct: 178 QASEGMECRRSLANSAATLWHPQAHFDWVRPGIILYGASPTGHWCDIANTGLKPVMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG+ V YGG+ + + I + A GYADGYP G Sbjct: 238 EIIGVQTLKAGDRVGYGGRYTASGEQRIGIVAAGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 287 LVDGVRTITVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LALRVP 352 >gi|171909526|ref|ZP_02924996.1| alanine racemase [Verrucomicrobium spinosum DSM 4136] Length = 388 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 105/383 (27%), Positives = 162/383 (42%), Gaps = 35/383 (9%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I LTAL++N SG+ AVVK NAYG G +A AL V F V +++E Sbjct: 16 WAEISLTALRHNAGVARTQSGH-DLMAVVKANAYGHGAVTVARALQEQ-VAVFGVANLQE 73 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR I +L ++ I+S+ + +S+L G + + Sbjct: 74 ALELRSAGLDTPILLLGTCLAEEQVPALRAGFHICINSLAEARAWSELAGRLGTTALGHV 133 Query: 127 QVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT- 184 +DTG R+G E D + +HL D+ + Q+E F Sbjct: 134 VLDTGMGRMGFIEPEWTEDTVRALVALPHISWEGLATHLPSPDEDAG-FTRRQIELFHQS 192 Query: 185 ----LISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSHPMQTV--- 235 +S + LASS+G+L P H L RPG+ LYG + Sbjct: 193 VRLAQVSGLQPRWVDLASSAGLLGYPAGHEFCNLVRPGLMLYGVDPLASTGLGDPYQEKL 252 Query: 236 ---VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 +T + R+IL+R+ G +SYG R + +A A GYADGYP +SG Sbjct: 253 RPVLTWKTRVILVRELPEGHGISYGRSHVTRRPTRVATLACGYADGYPRQVSGK------ 306 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGPD----IKLDD 345 + G P+LG++TMD M D+TD + GD + + G I ++ Sbjct: 307 ----NAFVLLHGQRCPLLGRVTMDQIMVDVTDFPAGQPVVPGDEVVLLGTQGEAKISAEE 362 Query: 346 VALASGTTNYDLLVRIGTRYAKF 368 VA +GT ++ + I R A+ Sbjct: 363 VADKAGTISWHVFTGITARVARV 385 >gi|146319466|ref|YP_001199178.1| alanine racemase [Streptococcus suis 05ZYH33] gi|146321663|ref|YP_001201374.1| alanine racemase [Streptococcus suis 98HAH33] gi|253752482|ref|YP_003025623.1| alanine racemase [Streptococcus suis SC84] gi|253754308|ref|YP_003027449.1| alanine racemase [Streptococcus suis P1/7] gi|253756242|ref|YP_003029382.1| alanine racemase [Streptococcus suis BM407] gi|166969434|sp|A4W3N5|ALR_STRS2 RecName: Full=Alanine racemase gi|166969435|sp|A4VXD9|ALR_STRSY RecName: Full=Alanine racemase gi|145690272|gb|ABP90778.1| Alanine racemase [Streptococcus suis 05ZYH33] gi|145692469|gb|ABP92974.1| Alanine racemase [Streptococcus suis 98HAH33] gi|251816771|emb|CAZ52414.1| alanine racemase [Streptococcus suis SC84] gi|251818706|emb|CAZ56542.1| alanine racemase [Streptococcus suis BM407] gi|251820554|emb|CAR47310.1| alanine racemase [Streptococcus suis P1/7] gi|319758890|gb|ADV70832.1| alanine racemase [Streptococcus suis JS14] Length = 367 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 151/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++++L A+ N+ M L AVVK NAYG G +A L + F V Sbjct: 6 HRPTQIRVNLDAIAENFEQVMTNLPPKTEAFAVVKANAYGHGAVAVAKKLSSQ-AAGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR + I +L + + N+ ++S+ L L + Sbjct: 65 SNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNISVTVASLDWLQDAKDLEADLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG R+G L + + + +H A AD+ QL F Sbjct: 125 TVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIEGVYTHFATADEVEQAHFESQLSVF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + + + +S+ + + F L R G LYG + +Q ++ Sbjct: 185 KEFLDVLPITPRWIHASNSATSIWHADTVFNLVRLGNILYGLNPSGRVLELPFGVQPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I+ +++ AG + YG T IA IGYADG +L GL Sbjct: 245 LVSEIVHVKQVEAGTTIGYGATYHSTDSEWIATVPIGYADGLVRSLQGLS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G I+G+I+MD + + + G + + G D I + + A GT Sbjct: 295 --VLVDGQACEIVGRISMDQITIRLPRAYPL--GQKVTLIGQDGDKTISVQEWADRIGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + + Sbjct: 351 NYEVVCLLTDRLPRIF 366 >gi|260891454|ref|ZP_05902717.1| alanine racemase [Leptotrichia hofstadii F0254] gi|260858837|gb|EEX73337.1| alanine racemase [Leptotrichia hofstadii F0254] Length = 365 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 154/371 (41%), Gaps = 21/371 (5%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I++ L +N + + + AV+K +AYG G +I AL G+++F V + +E Sbjct: 4 WAEININNLYSNIDEIEKIVAKDKIIAVIKADAYGHGMLEICNALIKKGIKNFAVATSDE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126 +K++ + +L + +I D N+ +++ ++ + K G + + Sbjct: 64 ALKIKELHDDIMVLILGPVENEYMDLIADKNIYFMVTDFEEIEYLEKTGKEKGKTTDVFI 123 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++DTG R+G E + + I + D +Q +F+ + Sbjct: 124 KIDTGMGRVGFQESETEKL-NEILKNASHINPIGIFSHFSSSDSDKDYTKLQESKFKAMC 182 Query: 187 SHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLY-GGTDKINKSHPMQTVVTAEA 240 L +S G L + R GI LY G T++ + + V++ A Sbjct: 183 EKISSGISSIKYRHLHNSFGTLKFQDSIEDFVRVGIILYGGVTEEETAPYKFKPVMSLFA 242 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I I+ +SYG K A +IGYADG LS G Sbjct: 243 KISYIKTLKEDSFISYGNTYKGKAGKTYATVSIGYADGVRRDLSN-----------KGYV 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 F KGY I+G++ MD + + + L + GD ++ FG +I + +VA T +Y+++ Sbjct: 292 FYKGYKCEIVGRVCMDQLIILLPEELKNEAKKGDVVEFFGENISVVEVADLCNTISYEIM 351 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 352 CGISQRVPRIY 362 >gi|56459152|ref|YP_154433.1| alanine racemase [Idiomarina loihiensis L2TR] gi|56178162|gb|AAV80884.1| Alanine racemase [Idiomarina loihiensis L2TR] Length = 363 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 159/375 (42%), Gaps = 21/375 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH R +I +A+++N + + VVK + YG G AL V Sbjct: 1 MHY-RQTRAEISSSAIQHNAKWVRRKMAGGKLLGVVKADGYGHGVVPAVNALEEL-VDGM 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 +EE + +R + + +L G E + + + + Q Y + Sbjct: 59 AAGFMEEALAVRETGYKGPLVILEGCFSATELNLCCEHQLSPVVHCEQQLEYIEQAKLTS 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+VDTG +RLG S ++A K ++SHLA AD +N+ Q + Sbjct: 119 PLWVWLKVDTGMHRLGWSEEQAPQALKRLRASKNVAGVTLMSHLANADA-EHRLNARQKQ 177 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHF-----QLTRPGISLYGGTDKI--NKSHPMQ 233 +F L K +A +S LL P+ + R G+ LYG ++ Sbjct: 178 QFCQLSETLKDYQARSFHNSAGLLNPDTQWSLQDNDWARAGLLLYGVNPSTVTEVQAELK 237 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + A +I + + GE V YG + S+IA A+GYADGYP Sbjct: 238 PAMRLVAPVIALHQLEKGESVGYGSGWSADKPSVIATVAMGYADGYPRQAEN-------- 289 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G ++G V + G+++MDM D+T ++++GD ++++GP+I + +VA + T Sbjct: 290 ---GTPAMVRGKRVGLAGRVSMDMLTIDVTGIENLQLGDDVELWGPNIDVREVAACADTI 346 Query: 354 NYDLLVRIGTRYAKF 368 ++ LL + R + Sbjct: 347 SWHLLTGVSGRVPRV 361 >gi|257877141|ref|ZP_05656794.1| alanine racemase [Enterococcus casseliflavus EC20] gi|257811307|gb|EEV40127.1| alanine racemase [Enterococcus casseliflavus EC20] Length = 373 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + ID TA+ N + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAIIDTTAITENIKHEIAHLPSETFLFAVVKANGYGHGAVQTALAAKEGGADGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCG 119 +++E ++LR I +L ++ ++ +L ++S+ L + Sbjct: 66 ATIDEAIELREAGITDPILILGVVNVCDIALLTTYDLSFPVASMDWLIEAGAYLEENPLN 125 Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++VDTG R+G +++E + + I +H + AD + Q Sbjct: 126 KPLKVHIKVDTGMGRIGFLTVEEVRQAVLWLEDHPSFEWEGIFTHFSTADQADTSYWETQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 +RF+ +++ + + +S+ L + R GI++YG +++ ++ Sbjct: 186 HQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALSEPFSLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ + +I ++ G + YG R I IGYADG+ + G Sbjct: 246 PALSLVSELIQVKLLEKGAGIGYGETYITPRQEWIGTVPIGYADGWLRKMQGFSI----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALA 349 ++G I+G++ MD M + + VG + + G I + DVA Sbjct: 301 -------LVEGERCEIVGRVCMDQLMIRLPRAF--AVGTPVTLIGENHGEQITMQDVADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 LETIHYEVACTLSARVPREY 371 >gi|228989418|ref|ZP_04149407.1| Alanine racemase [Bacillus pseudomycoides DSM 12442] gi|228770365|gb|EEM18940.1| Alanine racemase [Bacillus pseudomycoides DSM 12442] Length = 389 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG 56 M + F R ++++L + NN + + + AVVK NAYG +A AG Sbjct: 1 MEKSSFYRDTWVEVNLDEIYNNVTHIKEIIPESVEIFAVVKANAYGHDYVLVARTALEAG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I V+ P + + ++ + + ++ Sbjct: 61 ATRLAVAFLDEALVLRRAGITAPILVIGPSPPRDVNVAAENDVALTVFQKEWVEEAVEIW 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + + D+G R+G+ +E +F + + +L + +H A AD+ + Sbjct: 121 DSPFPMKFHINFDSGMGRIGIRERKELKEFLRSLEDAPFLELEGVYTHFATADEVETSYF 180 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ + F R GI++YG + + Sbjct: 181 DKQYNTFLEQLSWLKAFGVNPTFIHTANSAATMRFDGITFNAVRIGIAMYGLSPSVEIRP 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ + I++ + G+ +SY + + IA IGYADG+ L G Sbjct: 241 YLPIKLEPALSLHTTVAHIKRVIKGDRISYNVTYRTKTEEWIATVPIGYADGWLRRLQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + ++G VPI+G+ITMD M + + +G + + G I Sbjct: 301 ------------EVLVQGKRVPIVGRITMDQCMLHLP--CEVPLGTKVTLIGQQGDEYIS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA S T NY+++ I R + + Sbjct: 347 ATEVAEYSNTINYEIIATISFRVPRVF 373 >gi|74311720|ref|YP_310139.1| alanine racemase [Shigella sonnei Ss046] gi|73855197|gb|AAZ87904.1| alanine racemase 2, catabolic [Shigella sonnei Ss046] gi|323165267|gb|EFZ51055.1| alanine racemase [Shigella sonnei 53G] Length = 356 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALVLRVP 352 >gi|332687104|ref|YP_004456878.1| alanine racemase [Melissococcus plutonius ATCC 35311] gi|332371113|dbj|BAK22069.1| alanine racemase [Melissococcus plutonius ATCC 35311] Length = 372 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 157/381 (41%), Gaps = 28/381 (7%) Query: 3 SNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + ++ ID A+ NN + L+ AVVK N YG G + A A G F Sbjct: 5 RHRPTKIHIDTQAIYNNVHNEKKRLAAETELFAVVKANGYGHGAVQTAYAAKKGGATGFC 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--- 118 V ++E ++LR + I +L + P + + +L ++ L + ++ Sbjct: 65 VALLDEALELREASLPDPILILGIVMPDYIEDLLAYDLSVTVTDQSWLERAAIILEKLKP 124 Query: 119 GVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VDTG R+G + A+ + N + I +H + AD+ + Sbjct: 125 RKPLRLHIKVDTGMGRIGFLTETAVKKAINTITNNPYMEWEGIFTHFSTADERDTDYFDH 184 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPM 232 Q E+F+ +I + + +S+ L ++ + R G+++YG K +P+ Sbjct: 185 QNEKFQKIIQILPFLPQYVHVSNSATALWHQENNYNMVRFGVAMYGLNPSGGKLATPYPL 244 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ + ++ ++K AGE + YG ++D I +GYADG+ + G Sbjct: 245 LPALSLTSELVQVKKLPAGEGIGYGETYITSQDEWIGTFPMGYADGWLRHMQGF------ 298 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+++MD M + I VG + + G +I L +A Sbjct: 299 ------YVLVNGEKSEIIGRVSMDQCMIHL--KKEIPVGTKVTLVGKDQEEEITLQMIAD 350 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T +Y++ R + Y Sbjct: 351 HLQTIHYEVACTFSQRVPREY 371 >gi|312870262|ref|ZP_07730391.1| alanine racemase [Lactobacillus oris PB013-T2-3] gi|311094207|gb|EFQ52522.1| alanine racemase [Lactobacillus oris PB013-T2-3] Length = 374 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 149/374 (39%), Gaps = 29/374 (7%) Query: 11 IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I+L AL N + A L +++ AVVK NAYG G +A A AG V ++E + Sbjct: 13 INLRALGENIQAQKAALPADSKILAVVKANAYGHGLVPVAQAALRAGATGMCVAILDEAL 72 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPYAL 126 +LR VL + + + + + S+ +++ + L Sbjct: 73 ELRDSGLDVITLVLGITPVEEANVAAEAGVSLTVGSLDWLTKYHQFARQFNWKKPLKIHL 132 Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 VDTG R+G ++ E + + +H A AD Q R++ Sbjct: 133 AVDTGMGRIGFTNVAEFNQAVKILRRYPEFEFEGMFTHFATADSADHTYFDRQYARWQKF 192 Query: 186 ISHYKGIEA--SLASSSGILLGPNYHF-QLTRPGISLYGGTDK---INKSHPMQTVVTAE 239 I + +A+S+ L + R G+S+YG + + +Q V T Sbjct: 193 IESLDELPPYTHMANSATGLWHRDQITANTIRMGLSMYGYNPSGTDLPEDLHLQPVGTLR 252 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I ++K AGE VSYG D +A IGYADGYP ++G K Sbjct: 253 SSISFVKKLAAGESVSYGATYTAEHDEWLATVPIGYADGYPRCMTGF------------K 300 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 + G PI G++ MD M + ++ + + G I +++A + T NY Sbjct: 301 VLVDGQYCPIAGRVCMDQMMVRLPKYYPVD--TPVILMGRSGDLTITAEEMADQAQTINY 358 Query: 356 DLLVRIGTRYAKFY 369 ++L R + Y Sbjct: 359 EILTNFNNRIHRTY 372 >gi|315302294|ref|ZP_07873187.1| alanine racemase [Listeria ivanovii FSL F6-596] gi|313629339|gb|EFR97579.1| alanine racemase [Listeria ivanovii FSL F6-596] Length = 371 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 148/378 (39%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N + L N AVVK NAYG G ++A AG + F V Sbjct: 9 HRPTWIEIDRAAIRENIQNEQKHLPKNVAVWAVVKANAYGHGIIEVAKIAKEAGAKGFCV 68 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR + ++ G ++ + I S + + ++ V Sbjct: 69 AILDEALALREAGFRDDFILVLGATRKEDANLAARENI---SLTIYSEDWLEALNPEVPL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++D+G RLG+ E L +H A AD + QL R Sbjct: 126 KVHLKIDSGMGRLGIREAEEAAQIEAKIAGNMNLILEGAYTHFATADQLETSYFDQQLAR 185 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F T++ + +S+ LL F R GIS+YG T I ++ Sbjct: 186 FHTILRALNERPTFVHTANSAASLLQSQVGFDAIRFGISMYGLTPSIEIKASLPFKLKQA 245 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + I+ +++ G+ VSYG T +A IGYADG SG Sbjct: 246 LALYTEIVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF--------- 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G VPI+G++ MD T+ + + G + I G D + DD A Sbjct: 297 ---HVLVNGEKVPIIGRVCMDQTIIKLP--YKFQTGSKVTIIGTDEANTVTADDAAEYLD 351 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 352 TINYEVTCMLTERIPRKY 369 >gi|332365661|gb|EGJ43419.1| alanine racemase [Streptococcus sanguinis SK1059] Length = 369 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + IDL A+ N ++A AVVK NAYG G +++ + V F V Sbjct: 7 HRPSKAVIDLAAIDFNIRQLSAHLPQTTEKWAVVKANAYGHGAIEVSRHIEPL-VDGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I VL + + ++S+ L Sbjct: 66 SNIDEALELRSAGIGKKILVLGVSDLAALPLARKGKVSLTVASLEWLDLALTAEEDLTGL 125 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +++D+G R+G + + I +H A AD+ H QL RF Sbjct: 126 NFHIKIDSGMGRIGFRDSQEAQEAIHRLQAAGAVAEGIFTHFATADEAEHHKFEAQLARF 185 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 ++S + + +S+ L R G +YG + + + ++ Sbjct: 186 HQILSELDSVPPLVHASNSATSLWHSETVLNAVRLGDIIYGLNPSGTVLELPYEFKPALS 245 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 246 LVSELVHVKEVEAGADVGYGATYTSQSQEWIGTIPLGYADGWTRDMQGFD---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+G+++MD + + + G + + G I DVA GT Sbjct: 296 --VLIDGQRCPIVGRLSMDQITVRLPQAYPL--GTLVVLIGNSGAETITATDVAEKRGTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ I R + Y Sbjct: 352 NYEVVCLISDRVPRVY 367 >gi|218689133|ref|YP_002397345.1| alanine racemase [Escherichia coli ED1a] gi|218426697|emb|CAR07532.1| alanine racemase 2, PLP-binding [Escherichia coli ED1a] Length = 356 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I A+ G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIISVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|260888171|ref|ZP_05899434.1| alanine racemase [Selenomonas sputigena ATCC 35185] gi|260862200|gb|EEX76700.1| alanine racemase [Selenomonas sputigena ATCC 35185] Length = 385 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 158/381 (41%), Gaps = 25/381 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 S + +I+L A+++N+ + AL G A+ AVVK NAYG G +A AG Sbjct: 15 SKRAVWAEINLGAIRHNYRVIGEALCGGAKLCAVVKANAYGHGALAVAKEAVAAGAAYLA 74 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-V 120 V ++ E +LR + VL I P + ++ ++++ S Sbjct: 75 VATLSEAAELRRAGIGTPLLVLGLIDPLEAAEAVSLDVTQTVANLALAKAISAEALAQEK 134 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + L +DTG R+G + +EA + +L SH A AD QL Sbjct: 135 TAKLHLAIDTGMGRIGCTSEEASALARDIAVLPNIELEGAFSHFAMADVRDKAHARGQLA 194 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN------KS 229 F + +A S+ IL P H + R GI YG ++ Sbjct: 195 LFLRATEAIEEAGVHLKLRHIAESAAILQMPEAHLDMVRAGIIQYGMYPSEEVARDVRET 254 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 P++ + +AR++ ++ G + YG R S IA +GYADGY LSG Sbjct: 255 SPLRPAMALKARVLFVKDVPEGFAIGYGCTWHAKRRSRIATLPLGYADGYIRALSG---- 310 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVAL 348 I G P++G+I MD M D+TD + G + +FG + D+VA Sbjct: 311 -------KAHVEILGKTAPVVGRICMDQCMIDVTDIERVAEGTEVTLFGSATLSADNVAA 363 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++ I +R + Y Sbjct: 364 WLGTINYEIPCLIASRVRRVY 384 >gi|157145451|ref|YP_001452770.1| alanine racemase [Citrobacter koseri ATCC BAA-895] gi|157082656|gb|ABV12334.1| hypothetical protein CKO_01194 [Citrobacter koseri ATCC BAA-895] Length = 356 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 + +DL A+K N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPILASLDLQAMKQNLGIVRQAAPDARVWSVVKANAYGHGIERIWTAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G E I+DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHADELAIYDTYRLTTCIHSNWQLKVLQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG + ++SH A A+ Q Sbjct: 120 VYLKVNSGMNRLGFLPERVQTVWQQLRALPNVGEMTLMSHFADAE---HPEGIDQAMTKI 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 AHATEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++II ++ AG+ V YGG+ T++ I + A GYADGYP G Sbjct: 237 SQIIGVQTLKAGDRVGYGGRYTATQEQRIGIVAAGYADGYPRHAPN-----------GTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGTSVELWGKEIKIDDVASAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum seropedicae SmR1] gi|300074250|gb|ADJ63649.1| alanine racemase protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 152/365 (41%), Gaps = 18/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I ++AL++N A + AR V+K N YG G E+ + Sbjct: 3 RPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGFAA--ADGLALIE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + V+LR I +L G + + + I + + + S Sbjct: 61 PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAFTAAASLHA 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERF 182 L++++G NRLG + +++H A ADD + + + Q+ RF Sbjct: 121 HLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQVRRF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAEA 240 + G SL +S+ L+ RPG+ LYGGT ++ +T E+ Sbjct: 181 QAGSEGLDG-PRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTLES 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII I++ AGE + YG + + I V A GYADGYP G Sbjct: 240 RIIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPN-----------GTPV 288 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G+++MDM D+T +VG ++++G + +D+VA A+GT Y+L+ Sbjct: 289 LVDGVKTGTVGRVSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMCA 348 Query: 361 IGTRY 365 + R Sbjct: 349 LAPRV 353 >gi|170740813|ref|YP_001769468.1| alanine racemase [Methylobacterium sp. 4-46] gi|226711054|sp|B0UL34|ALR_METS4 RecName: Full=Alanine racemase gi|168195087|gb|ACA17034.1| alanine racemase [Methylobacterium sp. 4-46] Length = 364 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 15/366 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL I+L AL NW + + A AAV+K +AYG G ++ PAL+ AG + FFV + Sbjct: 9 ARLTINLRALAANWRRLAEEAAGAECAAVIKADAYGTGIDRAGPALWRAGCRTFFVAHLS 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E + R P+A I+VL G+ PG D L PV+ S ++ + + + G P A Sbjct: 69 EAERARAALPEAVIYVLNGLPPGSAPAYRDRALRPVLGSREEIEEWAAFCRARGERLPAA 128 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L VDTG NRLGLS EAL + + + SL++SHL A+ P V + Q+ F + Sbjct: 129 LHVDTGMNRLGLSPDEALALAGGAALEDV-AASLLVSHLVSAEVPGDAVTARQVADFARV 187 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + + G+ ASL +S+G LG ++ RPG +LYGG + +PM+ VV +A I+ + Sbjct: 188 AAAFPGLTASLGNSAGTFLGARARHEMVRPGYALYGGNPRPGGPNPMRPVVRLDATILQV 247 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R G Y + +A ++GYADGYP SG + + G Sbjct: 248 RDVPPGATAGYNARWTAPGPRRLATLSLGYADGYPRAGSGR-----------AEAVVAGR 296 Query: 306 MVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 P++G I+MD+ + D+TD+ G + G + +D+V +GT Y++L +G Sbjct: 297 RCPVVGTISMDLVILDVTDAPPEAARRGARATLIGEGLDIDEVGQRAGTIGYEILTNLGR 356 Query: 364 RYAKFY 369 R + Y Sbjct: 357 RSERAY 362 >gi|159039766|ref|YP_001539019.1| alanine racemase [Salinispora arenicola CNS-205] gi|189027391|sp|A8M4B3|ALR_SALAI RecName: Full=Alanine racemase gi|157918601|gb|ABW00029.1| alanine racemase [Salinispora arenicola CNS-205] Length = 372 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/377 (26%), Positives = 158/377 (41%), Gaps = 27/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL A++ N + + A AVVK + YG G A A + G V +++ Sbjct: 4 AEVRVDLDAIRENVSWLRS-GSAAELMAVVKGDGYGHGMVPAALAALDGGADWLGVCTLD 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E + LR A I + +SV Q + G Sbjct: 63 EALTLRREGITAPILAWLLAPGLPLHEGVAAGIDLGAASVAQLDEMVQAGRTAGRPARLH 122 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERF 182 L++DTG +R G ++ + + + + SH AD P QL F Sbjct: 123 LKIDTGLSRGGATVSDWPGLLTAAAKAQADGTVEVVGVWSHFVYADAPGHPTTDRQLAVF 182 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + + LA+S+ L P+ HF L RPG+++YG + +S ++ +T Sbjct: 183 HEGLDMVEKAGLRPRYRHLANSAATLTRPDAHFDLVRPGLAVYGLSPVAGESFGLRPAMT 242 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A AR++L ++ AG VSYG RDS +AV +GYADG P + S Sbjct: 243 ARARVMLTKQVPAGAGVSYGHTYTTERDSTLAVIPLGYADGVPRSASNS----------- 291 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 G + G I G++ MD + D D + GD +FG + DD A A GT Sbjct: 292 GPVHLGGVRRTISGRVCMDQFVLDCGDDP-VAPGDVAVLFGSGRNGEPTADDWAEAVGTI 350 Query: 354 NYDLLVRIGT-RYAKFY 369 NY+++ R G+ R + Y Sbjct: 351 NYEIVTRFGSTRVPRSY 367 >gi|293365913|ref|ZP_06612616.1| alanine racemase [Streptococcus oralis ATCC 35037] gi|307702317|ref|ZP_07639275.1| alanine racemase [Streptococcus oralis ATCC 35037] gi|291315591|gb|EFE56041.1| alanine racemase [Streptococcus oralis ATCC 35037] gi|307624120|gb|EFO03099.1| alanine racemase [Streptococcus oralis ATCC 35037] Length = 367 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 158/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPERTLKWAVVKANAYGHGAVAVAMAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGLSKKILILGVSEIEAIDLAKEYDITLTVAGLEWIQALLARETDLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFRDSSEAEQAQALLQQYGARVEGIFTHFATADEESDDYFNQQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + ++ +T Sbjct: 185 KTILASMKEVPDLVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLKPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGTNGGKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|331646502|ref|ZP_08347605.1| alanine racemase [Escherichia coli M605] gi|281178345|dbj|BAI54675.1| alanine racemase [Escherichia coli SE15] gi|330911052|gb|EGH39562.1| alanine racemase, catabolic [Escherichia coli AA86] gi|331045254|gb|EGI17381.1| alanine racemase [Escherichia coli M605] Length = 356 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHQEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|78186168|ref|YP_374211.1| alanine racemase region [Chlorobium luteolum DSM 273] gi|78166070|gb|ABB23168.1| alanine racemase [Chlorobium luteolum DSM 273] Length = 372 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 154/375 (41%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 I L L+ N + +G AVVK NAYG G + A AL G+ F V + Sbjct: 8 PMAEALIRLQHLQENARLIRKKAG-VPLMAVVKANAYGHGARETARALLAEGIGHFGVAN 66 Query: 65 VEEGVKLRLYTPQARI---FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 + E ++LR R P Q + + + L + S G Sbjct: 67 IHEAIELRTCGSLKRPAAILSFSSPLPSQIPSYLEHGIEMTVCDPATLRAAEAVASGAGA 126 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + L+VDTG RLGLS EA +L I +H A + QLE Sbjct: 127 TIGVHLKVDTGMGRLGLSPAEAKQVLQELPRCPHIELRGIYTHFADSS-FDRAFTRKQLE 185 Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQ 233 FR Y+ + A+S IL P+ F + RPGI LYG + ++ Sbjct: 186 AFRAFTGEYEHASGRRVLKHAANSGAILSEPDATFDMVRPGILLYGCHPSNDAHLRLDVK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ EAR++ ++ AG +SY K +IA A GYADGY +LSG Sbjct: 246 PVMQVEARVVFLKTVTAGTTISYNRTWKAAGPRIIATIAAGYADGYHRSLSG-------- 297 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGT 352 I P +G ITMD M D+ + VGD +FG ++ +++A +GT Sbjct: 298 ---KATVSINAITYPQVGTITMDQIMVDLGTESDVRVGDRAVLFGWDGMRAEELASRAGT 354 Query: 353 TNYDLLVRIGTRYAK 367 +Y+LL + R + Sbjct: 355 ISYELLTSVSARVLR 369 >gi|283785526|ref|YP_003365391.1| alanine racemase, catabolic [Citrobacter rodentium ICC168] gi|282948980|emb|CBG88583.1| alanine racemase, catabolic [Citrobacter rodentium ICC168] Length = 356 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ +DL ALK N + + + +AR +VVK NAYG G ++I AL G F + + Sbjct: 3 RPIQASLDLQALKQNLNIVRQAAPDARVWSVVKANAYGHGIDRIWNAL--GGTDGFALLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G ++ ++DT + + Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAEDLAVYDTWRLTTCVHSNWQLKAIQNAKLNAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V++G NRLG + ++SH A A+ P ++ T Sbjct: 121 YVKVNSGMNRLGFLPERLQTVWQQLRAMPNVGEMTLMSHFATAEHPGGIGKAMARIGLAT 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 SLA+S+ L P H RPGI LYG + + ++ V+T + Sbjct: 181 EGLEC---RRSLANSAATLWHPEAHGDWVRPGIILYGASPSGQWRDIANTGLKPVMTLNS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG+ V YG + + I + A GYADGYP G Sbjct: 238 EIIGVQTLQAGDRVGYGERFTAQGEQRIGIVAAGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 287 LVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LALRVP 352 >gi|77409010|ref|ZP_00785730.1| alanine racemase [Streptococcus agalactiae COH1] gi|77172394|gb|EAO75543.1| alanine racemase [Streptococcus agalactiae COH1] Length = 366 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + R IDL A+ NN S+ + +T AVVK NAYG G +++ + V Sbjct: 1 MISSYHRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKY-IESIV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR I VL + P Q + + N+ ++S+ L Sbjct: 60 DGFCVSNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVTSLEWLRLCQTSAV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + + + I +H A AD+ + + Sbjct: 120 DLSGLEVHIKVDSGMGRIGVRQLDEGNKLISELGESGASVKGIFTHFATADEADNCKFNQ 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F+ IS ++S+ L F R G+ +YG ++ +P+ Sbjct: 180 QLTFFKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ E+ ++ +++ G V YG ++T D + IGYADG+ + G Sbjct: 240 NPALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + I+G+++MD + + +G + + G I DVA Sbjct: 295 -------VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTLIGQQGSCNITTTDVAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R ++Y Sbjct: 346 KRQTINYEVLCLLSDRIPRYY 366 >gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492] gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36] gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492] gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36] Length = 841 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 150/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + L + +VK +AYG G +IA L V V +E Sbjct: 483 LEVNLGAMIANLNYYRGKLKPETKMVCMVKASAYGAGSYEIAKTLQEHHVDYLAVAVADE 542 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR A I ++ K +FD L P + S L K + P Sbjct: 543 GSELRKAGITANIIIMNPEMTA-FKTMFDYKLEPEVYSFHLLDALIKEAEKEGITNFPIH 601 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184 +++DTG +RLG +L++ + + SHL +D Q+E F Sbjct: 602 IKLDTGMHRLGFALEDMPRLIERLKGQNAVIARSVFSHLVGSDSQQFDSFTRRQIEMFEK 661 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 I + +S+GI P F + R GI LYG N M V T + Sbjct: 662 ASMELQGAFPHKILRHICNSAGIERFPGAQFDMVRLGIGLYGVNPIDN--SIMNNVSTLK 719 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + LTR S IA IGYADG L Sbjct: 720 TTILQIRDVPEEDTVGYSRKGHLTRPSRIAALPIGYADGLNRHLGNGH----------AY 769 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G I MD+ M D+TD + GD ++IFG + + ++ A T Y++L Sbjct: 770 CLVNGQRAVYVGNICMDVCMIDVTDI-DCKEGDSVEIFGNHLPITVLSDALATIPYEVLT 828 Query: 360 RIGTRYAKFY 369 + TR + Y Sbjct: 829 SVSTRVKRVY 838 >gi|301017210|ref|ZP_07181991.1| alanine racemase [Escherichia coli MS 69-1] gi|300400341|gb|EFJ83879.1| alanine racemase [Escherichia coli MS 69-1] Length = 356 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMTRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHSEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|56962581|ref|YP_174307.1| alanine racemase [Bacillus clausii KSM-K16] gi|56908819|dbj|BAD63346.1| alanine racemase [Bacillus clausii KSM-K16] Length = 410 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 150/382 (39%), Gaps = 32/382 (8%) Query: 7 LRLKIDLTALKNNW----HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +++DL A+ +N + N AVVK NAYG G +A AG V Sbjct: 12 TWVEVDLNAISSNVSSLARFYKSQGHNVAIMAVVKANAYGHGAIAVAKEALAAGATFLGV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GV 120 ++E ++LR QA I VL P ++ + + L ++ ++ Sbjct: 72 ALLDEALELRKAGIQAPILVLGKTRPENAELARSEGISVTVFEQEWLEEATRFLAKSPND 131 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 +++DTG RLG E + K + + +H A AD+ Q E Sbjct: 132 PLRIHVKMDTGMGRLGQQTVENTMAVVCAAQKIG-VVEGLFTHFATADELDHTYYRKQQE 190 Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231 RF + + S+ +S+ + P + + R GIS+YG T + Sbjct: 191 RFAACVDKLEEANVSIPFIHTGNSAASMRYPGDMYNMVRFGISMYGLTPSVEIKQALPFK 250 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ + + + + G+ VSYG + + IA IGYADG+ S Sbjct: 251 LIPALSLKTKTVFTKLIQKGDAVSYGATYQAEAPTWIATLPIGYADGWARQNS------- 303 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 GG + G G+I MD M ++++ + G + + G I+LDDVA Sbjct: 304 ---TKGGYALVNGQKARFAGRICMDQCMIELSE--PVPNGTTVTLVGKDGQEQIELDDVA 358 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY+ + R + Y Sbjct: 359 KRLDTINYEAACMLNPRLPRIY 380 >gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132] gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132] Length = 802 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 104/371 (28%), Positives = 155/371 (41%), Gaps = 23/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L A+ +N + L + + +VK AYG G ++A L V V +E Sbjct: 442 LEINLDAITHNLNYYRRQLGSSTKIMVMVKAFAYGSG-NEVAAWLQYHRVDYLTVAFPDE 500 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PY 124 GV LR I V+ P IF+ L P I S L Y K Sbjct: 501 GVALRENGISLPIMVMNS-DPDSYSTIFEYGLEPEIYSFRVLEAYLKAKENWKPDELTKI 559 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFR 183 L++DTG +RLG +E + Q++ I SHL AD+ + Q+ + Sbjct: 560 HLKIDTGMHRLGFLEKEVPPLLKALEDHPKVQVASIFSHLVGADEAKHDAFSKEQIACYE 619 Query: 184 TLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 S + +++GI+ P + ++R GI LYG + +QTV T Sbjct: 620 RASSAIINGLGYSPIRHICNTAGIIRFPEARYDMSRLGIGLYGVASSGLEQKDLQTVATL 679 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I I+ E V YG L R+S IA AIGYADGY Sbjct: 680 KTTISQIKVLDPKETVGYGRYGVLNRESKIATIAIGYADGYDRGFG----------RGNA 729 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MDM M D+TD + GD + +FG + L ++A T Y++L Sbjct: 730 FVLVHGKACPTMGSICMDMCMIDVTDV-DCKEGDEVIVFGENPSLTELAEKINTIPYEIL 788 Query: 359 VRIGTRYAKFY 369 I +R + + Sbjct: 789 TGISSRVKRVF 799 >gi|300704262|ref|YP_003745865.1| alanine racemase 2, plp-binding [Ralstonia solanacearum CFBP2957] gi|299071926|emb|CBJ43255.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum CFBP2957] Length = 368 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 94/361 (26%), Positives = 152/361 (42%), Gaps = 18/361 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I AL NN + ++R AVVK NAYG G E++ L F + ++E V+ Sbjct: 2 IHGPALANNLQVARRHAPDSRVWAVVKANAYGHGIERVYEGLRQ--TDGFGLLDLDEAVR 59 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR Q + +L G P ++ L I QL G L+++ Sbjct: 60 LRQLGWQGPVLLLEGFFKPEDLALVEQYRLTTTIHCEEQLRMLELARLKG-PVSVQLKIN 118 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 TG +RLG + + + ++H + AD P QL F Sbjct: 119 TGMSRLGFAPAAYRAAWERARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFEQATQGL 176 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILI 245 G EASL++S+ L P H RPG+ LYG + + + +T ++ +I I Sbjct: 177 PG-EASLSNSAATLWHPRAHRDWVRPGVILYGASPTGVATDIEGTGLMPAMTLKSELIAI 235 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 + G + YG + ++ + I + A GYADGYP G H + G Sbjct: 236 QDLQPGATIGYGSRFQVEQPMRIGIVACGYADGYPRHAPGWGDNH-------TPVLVDGV 288 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 ++G+++MDM D+ VG + ++G + +D+VA A+GT Y+L+ + R Sbjct: 289 RTRMVGRVSMDMITVDLAGVPGARVGTPVTLWGQGLPIDEVAHAAGTVGYELMCALALRV 348 Query: 366 A 366 Sbjct: 349 P 349 >gi|78062814|ref|YP_372722.1| alanine racemase [Burkholderia sp. 383] gi|77970699|gb|ABB12078.1| Alanine racemase [Burkholderia sp. 383] Length = 373 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 154/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R VVK +AYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAAQSRVWGVVKADAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDLLIAARPQQPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ QL++F Sbjct: 121 QLKMNSGMNRLGYRPAAFRAAWERAASAPSIGKITLMMHFANADEGE---VDWQLDQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + G E S ++S+ +L P H RPG LYG + P+ +T + Sbjct: 178 TTAGIPG-ERSTSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARDIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLSPEETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|70725962|ref|YP_252876.1| alanine racemase 1 [Staphylococcus haemolyticus JCSC1435] gi|68446686|dbj|BAE04270.1| alanine racemase 1 [Staphylococcus haemolyticus JCSC1435] Length = 382 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S++F R L +DL+A+ NN++++ L + VVK N+YGLG KIA L G Sbjct: 2 SDKFYRSTYLNVDLSAILNNYNTVRTLHSDKTVIPVVKANSYGLGSVKIAQHLMKNGADF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS--KLMS 117 F V +++E ++LR++ A+I +L I + + S+ L Sbjct: 62 FAVATLDEAIELRMHGINAQILILGVIPLEDINKAIQHRVALTVPSLQWLQHAIELISDD 121 Query: 118 CGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG RLG+ L+E + + + +H A AD+P + Sbjct: 122 NEKNLWLHVKLDTGMGRLGIKSLEEYKEVIDLIQSHPHLVFEGVYTHFANADEPGD-LMD 180 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTV 235 Q E+F TL++ + + + +S L N+ R GISLYG ++T Sbjct: 181 HQYEQFETLVTQAEKPKFIHSQNSAGSLLRNFELCNAVRLGISLYGYYPSAYVKEKVETE 240 Query: 236 VTAEA----RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + A +++ + GE VSYG T D IA+ IGYADGY ++ Sbjct: 241 LQPSAQLLTQVVQTKYLKVGESVSYGSTFTATEDIKIAILPIGYADGYLRSMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G +KG+ ++G++ MD + + D ++ GD + + + +A Sbjct: 294 -----GAFVNVKGHQCEVIGRVCMDQMIIKVPD--DVKEGDSVTLLDNAYDSPQSAETLA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++L +G R + Y Sbjct: 347 QKQDTISYEVLCNLGRRLPRIY 368 >gi|237750219|ref|ZP_04580699.1| alanine racemase [Helicobacter bilis ATCC 43879] gi|229374113|gb|EEO24504.1| alanine racemase [Helicobacter bilis ATCC 43879] Length = 375 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 156/379 (41%), Gaps = 26/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ I +N + V+K +AYG G K+ G+ V Sbjct: 8 RYVYANIHTDHFLHNLKLIREYVPQRTYLMLVLKADAYGHGALKLGKLALTHGIYQVGVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 + +E ++LR + QA+I VL P ++ + + +K Sbjct: 68 TFDEAMELREHLTQAKILVLGYTPPSVVDEAIKHDIELCVYDIDMARELNKSAKRQNKQA 127 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG NR+G ++L+ H + I +H A AD ++Q ER Sbjct: 128 KIHIKLDTGMNRIGYQCDSKSLNEIHEIAKLSNVFIRGIFTHFASAD-CDLGYLNLQYER 186 Query: 182 FRTLIS---HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 F +S ++ A+S+ I+ H + R GI YG ++ V Sbjct: 187 FCAFVSLLPKHEDTLLHCANSASIMNASKTHLDMVRLGIIAYGLKPSFAMDMQGLELKPV 246 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ A I+ I++ E VSYGG + + IA +GYADGY LS Sbjct: 247 MSFRAHIVHIKEVDTNECVSYGGTFITHKKTKIATLPVGYADGYMRLLSN---------- 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350 + I+G ++G I MD M D++D ++VGD +FG D + +D++A Sbjct: 297 -KAEVLIRGKRARVIGNICMDQCMVDVSDIEEVKVGDCAVLFGYDDFGNILSVDELAAHI 355 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY+L + R A+ Y Sbjct: 356 GTINYELTCAVSKRVARVY 374 >gi|170697807|ref|ZP_02888893.1| alanine racemase [Burkholderia ambifaria IOP40-10] gi|170137309|gb|EDT05551.1| alanine racemase [Burkholderia ambifaria IOP40-10] Length = 373 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + A+++N + + +R AVVK NAYG G E+I P L + Sbjct: 3 RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVVKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQFDLLIAAKPRQPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ QL++F Sbjct: 121 QLKMNSGMNRLGYRPHAFRAAWERAAAAPSIGKITLMMHFANADEGE---VDWQLDQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S ++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRQA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|331657235|ref|ZP_08358197.1| alanine racemase [Escherichia coli TA206] gi|315297316|gb|EFU56596.1| alanine racemase [Escherichia coli MS 16-3] gi|331055483|gb|EGI27492.1| alanine racemase [Escherichia coli TA206] Length = 356 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARV--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 DQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|296130437|ref|YP_003637687.1| alanine racemase [Cellulomonas flavigena DSM 20109] gi|296022252|gb|ADG75488.1| alanine racemase [Cellulomonas flavigena DSM 20109] Length = 410 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 160/382 (41%), Gaps = 24/382 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +DL A++ N ++ A + A+ AVVK +AYG G A A G V Sbjct: 18 PARAVVDLGAVRGNVRALAAHAPTAQVMAVVKADAYGHGLVPSALAALEGGATWLGTAQV 77 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKLMSCGVSHP 123 E + LR + + PG + V S + G + Sbjct: 78 PEALHLRRAGVTGARILTWLYAPGAPLREAVEADVDLSVASRWALDDVVAAAREAGRTAR 137 Query: 124 YALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+VDTG R GL E L + + + ++ + SHLA AD P V + Q Sbjct: 138 VHLKVDTGLGRNGLVPAQLPEVLTAALAAEAEGVVRVVGVWSHLAFADAPDHAVVAQQAG 197 Query: 181 RFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT- 234 F ++ + LA+S+ L P H+ L RPGI++YG + P + Sbjct: 198 VFAEAVAAVEAAGARLEVRHLANSAATLTSPALHWDLVRPGIAVYGLSPVPQLGGPERFG 257 Query: 235 ---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +T EA++ ++ AG VSYG + + D+++ V +GYADG P SG Sbjct: 258 LVPAMTFEAQLATVKPVPAGSGVSYGHEYVVPHDTVLGVVPVGYADGVPRHASGSAER-- 315 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 GG + G + + G++ MD + D+ + GD + ++G D A Sbjct: 316 ----WGGPVQVGGRRLGVAGRVCMDQVVLDLGPGATESAGDRVVLWGDGRDGGPTAQDWA 371 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 +GT +Y+L+ R+G R + Y Sbjct: 372 DVAGTISYELVTRLGARVPRTY 393 >gi|295095597|emb|CBK84687.1| alanine racemase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 356 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 161/367 (43%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++DL ALK+N + + +R +VVK NAYG G ++I AL G F + Sbjct: 2 SRPILAQLDLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWSAL--GGTDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ + D + + Sbjct: 60 NLEEAILLRERGWKGPILLLEGFFHAQDLPLLDKYRLTTSVHSNWQIKAIQDAKLHAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG + K +++H A A+ P +++ Sbjct: 120 LYLKVNSGMNRLGFQPERVHTVWQQLRALKNVGEMTLMAHFADAEKPDGIADAMVRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P H+ RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLDCPRSLSNSAATLWHPEAHYNWVRPGIVLYGASPSGQWQDIANSGLKPVMTLR 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AG+ V YG + + + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGDTVGYGSRYRAAGEQRIGIVAGGYADGYPRIA-----------PSGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G +G ++MDM D+T +G ++++G ++K+DDVA A+GT Y+L+ Sbjct: 286 VWVDGVRTGTVGTVSMDMLAIDLTPCPQAGIGSPVELWGNEVKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|269797315|ref|YP_003311215.1| alanine racemase [Veillonella parvula DSM 2008] gi|269093944|gb|ACZ23935.1| alanine racemase [Veillonella parvula DSM 2008] Length = 370 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 167/379 (44%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L I+ + ++ N + +L + + AV+K N YG G + G + V Sbjct: 2 RPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 EE V LR I++L P +++ DTN IP + L +K+ + + Sbjct: 62 IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLESLNKVADNHDMII 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 A+ VDTG +R+G+ ++A++F + + ++ SH++ AD Q ++F Sbjct: 122 RVAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHSQTQKF 181 Query: 183 RTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 ++ + LA+S+G+L + F RPGI YG ++ ++ Sbjct: 182 HRMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + ++ ++ AGE + YG T IA +GYADGYP +LS Sbjct: 242 VLSFHSEVVHVQHIPAGEGIGYGSTYITTEPMTIATIPVGYADGYPRSLSNR-------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I G P++G+I MD M + D+++++ GD + + G I ++A + Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVSVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ R + Y Sbjct: 351 STIPYEIFCGFSERVPRQY 369 >gi|22537824|ref|NP_688675.1| alanine racemase [Streptococcus agalactiae 2603V/R] gi|25011768|ref|NP_736163.1| alanine racemase [Streptococcus agalactiae NEM316] gi|76788152|ref|YP_330298.1| alanine racemase [Streptococcus agalactiae A909] gi|77412407|ref|ZP_00788715.1| alanine racemase [Streptococcus agalactiae CJB111] gi|77414530|ref|ZP_00790676.1| alanine racemase [Streptococcus agalactiae 515] gi|81845386|sp|Q8DY10|ALR_STRA5 RecName: Full=Alanine racemase gi|81845564|sp|Q8E3M9|ALR_STRA3 RecName: Full=Alanine racemase gi|123601347|sp|Q3JZK5|ALR_STRA1 RecName: Full=Alanine racemase gi|22534718|gb|AAN00548.1|AE014268_8 alanine racemase [Streptococcus agalactiae 2603V/R] gi|24413308|emb|CAD47387.1| unknown [Streptococcus agalactiae NEM316] gi|76563209|gb|ABA45793.1| alanine racemase [Streptococcus agalactiae A909] gi|77159428|gb|EAO70593.1| alanine racemase [Streptococcus agalactiae 515] gi|77161542|gb|EAO72545.1| alanine racemase [Streptococcus agalactiae CJB111] Length = 366 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + R IDL A+ NN S+ + +T AVVK NAYG G +++ + V Sbjct: 1 MISSYHRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKY-IESIV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR I VL + P Q + + N+ ++S+ L Sbjct: 60 DGFCVSNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + + + I +H A AD+ + + Sbjct: 120 DLSGLEVHIKVDSGMGRIGVRQLDEGNKLISELGESGASVKGIFTHFATADEADNCKFNQ 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F+ IS ++S+ L F R G+ +YG ++ +P+ Sbjct: 180 QLTFFKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ E+ ++ +++ G V YG ++T D + IGYADG+ + G Sbjct: 240 NPALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + I+G+++MD + + +G + + G I DVA Sbjct: 295 -------VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTLIGQQGSCNITTTDVAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R ++Y Sbjct: 346 KRQTINYEVLCLLSDRIPRYY 366 >gi|170768101|ref|ZP_02902554.1| alanine racemase [Escherichia albertii TW07627] gi|170122867|gb|EDS91798.1| alanine racemase [Escherichia albertii TW07627] Length = 356 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 161/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + ++R +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLRALKQNLTIVRQAAPHSRVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQYRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG+S + L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGVSPERVLTVWQQLRAMTNVGEMTLMSHFAGAEHPDGITDAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 DQAAEGLACRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I+ G+ V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGIQTLKVGDQVGYGGRYTAPDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|190572625|ref|YP_001970470.1| alanine racemase [Stenotrophomonas maltophilia K279a] gi|190010547|emb|CAQ44156.1| putative alanine racemase [Stenotrophomonas maltophilia K279a] Length = 355 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 163/369 (44%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L G + A++K +AYG G + A AL F V + Sbjct: 2 RPARALIDLGALRSNYRLAREL-GGGKALAIIKADAYGHGAVRCAQAL-EGEADGFGVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++LR +A I +L GI ++ + + + S QL + Sbjct: 60 IEEALELRQAGIRAPILLLEGIFELSDMALVAEHDFWFAVGSPWQLEAVAAF-DSPRPLT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +RLGL + + ++++HLA AD+ S Q F Sbjct: 119 VWLKLDSGMHRLGLDVDSFRAAHARLSALPEVERIVLMTHLARADELDSERTHEQAATFA 178 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEA 240 I G E S+ +S +L P+ RPG+ LYG + + ++ V+T ++ Sbjct: 179 RAIDGLHG-ETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDNTLTERLRPVMTMQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I R AGE V YG + + + V A+GYADGYP G Sbjct: 238 KVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPN-----------GTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G ++G+++MDM D+T VG ++++G L ++A G + Y L Sbjct: 287 LIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCA 346 Query: 361 IGTRYAKFY 369 + R AK Y Sbjct: 347 V-KRVAKVY 354 >gi|319745645|gb|EFV97945.1| alanine racemase [Streptococcus agalactiae ATCC 13813] Length = 366 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 164/381 (43%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + R IDL A+ NN S+ + +T AVVK NAYG G +++ + V Sbjct: 1 MISSYHRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKY-IESVV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR I VL + P Q + + N+ ++S+ L Sbjct: 60 DGFCVSNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + + + + +H A AD+ + + Sbjct: 120 DLSGLEVHIKVDSGMGRIGVRQLDEGNKLISELGESGASVKGVFTHFATADEADNCNFNQ 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F+ IS ++S+ L F R G+ +YG ++ +P+ Sbjct: 180 QLTFFKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ ++ +++ G V YG ++T D + IGYADG+ + G Sbjct: 240 KPALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + I+G+++MD + + +G + + G I DVA Sbjct: 295 -------VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTLIGQQGSCNITTTDVAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R ++Y Sbjct: 346 KRQTINYEVLCLLSDRIPRYY 366 >gi|110805189|ref|YP_688709.1| alanine racemase [Shigella flexneri 5 str. 8401] gi|110614737|gb|ABF03404.1| alanine racemase 2, catabolic [Shigella flexneri 5 str. 8401] gi|332757831|gb|EGJ88158.1| alanine racemase [Shigella flexneri 4343-70] gi|333005412|gb|EGK24930.1| alanine racemase [Shigella flexneri K-218] Length = 356 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|333007517|gb|EGK26995.1| alanine racemase [Shigella flexneri K-272] gi|333019899|gb|EGK39171.1| alanine racemase [Shigella flexneri K-227] Length = 356 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+ + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYGQHRLTTCVHSNWQLKALQNARLKAPLG 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella buccae ATCC 33574] gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella buccae ATCC 33574] Length = 831 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 155/373 (41%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L+A+ N + + + + ++K + YG G +IA L + V V Sbjct: 470 TTLEVNLSAVVKNLNHYRSFMKAETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVA 529 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + I ++ K +FD +L P + S L K +P Sbjct: 530 DEGVTLRRNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGYP 588 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG Q+ ++ + SH +D D ++ Q Sbjct: 589 VHIKLDTGMHRLGFDPRQDMEQLIDRLRHQNAIIPRSVFSHFVGSDNDGFDEFSARQFAL 648 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F I + +S+GI P + R G+ LYG + N+ + V Sbjct: 649 FDEGSKQLQAAFEHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNE--IIHNVS 706 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ +R+ AG+ V Y + L DS++A IGYADG LS Sbjct: 707 TLKTTILQMRRVPAGDTVGYSRKTVLEHDSVVAAIPIGYADGLDRHLSNRH--------- 757 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +G I MD+ M D+T + GD ++IFG + + ++ T Y+ Sbjct: 758 -GYCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDIVDTIPYE 815 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 816 VLTGISNRVKRVY 828 >gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter heparinus DSM 2366] gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366] Length = 817 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 158/368 (42%), Gaps = 20/368 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++IDL AL N L + A+VK +YG G +IA L V V +E Sbjct: 460 MEIDLNALAGNLQFYRSKLLPGVKVMAMVKAFSYGSGSFEIANLLQYHKVDYLAVAYTDE 519 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G+ LR I V+ P I NL P I ++ L + + +P L+ Sbjct: 520 GISLRKAGITLPIMVMSP-EPSAFDAIIRYNLEPEIYNIEILQGFIGFLKTD-QYPIHLK 577 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186 +DTG +RLG + D + +++ + SHL ++D Q+ERF + Sbjct: 578 IDTGMHRLGFEEPDLSDLLKVLTETRKVKVASVFSHLVGSEDGLHDEFTRHQIERFTAMT 637 Query: 187 S-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + ++++SGI P ++ R GI LYG + + +QTV + Sbjct: 638 ELISETLHYPFIRHISNTSGISRHPETQLEMVRLGIGLYGFDAALKNNTALQTVAILKTT 697 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I I+ E V YG + L + IA IGYADGY G+ Sbjct: 698 ITQIKHLKPNETVGYGRKGLLPKGGTIATVKIGYADGYSRAFGNGT----------GRML 747 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 IKG +VP +G I MDM M D+T ++ GD + +F ++ + +A GT Y++L + Sbjct: 748 IKGKLVPTVGVICMDMCMLDVTGL-DVKTGDEVIVFNNELSIAQLATQIGTIPYEILTNV 806 Query: 362 GTRYAKFY 369 R + Y Sbjct: 807 SQRVKRVY 814 >gi|171319654|ref|ZP_02908747.1| alanine racemase [Burkholderia ambifaria MEX-5] gi|171095107|gb|EDT40115.1| alanine racemase [Burkholderia ambifaria MEX-5] Length = 373 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + A+++N + + +R AV+K NAYG G E+I P L + Sbjct: 3 RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVDLADRHRLTVTVHCDEHLDLLIAAKPRQPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ QLE+F Sbjct: 121 QLKMNSGMNRLGYRPHAFRAAWERAAAAPSIGKITLMMHFANADEGE---VDWQLEQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S ++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPEETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+LL Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELLCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|224477060|ref|YP_002634666.1| alanine racemase [Staphylococcus carnosus subsp. carnosus TM300] gi|254802386|sp|B9DMI9|ALR_STACT RecName: Full=Alanine racemase gi|222421667|emb|CAL28481.1| alanine racemase [Staphylococcus carnosus subsp. carnosus TM300] Length = 384 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 151/377 (40%), Gaps = 25/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 LK+DL A+ N+ + L N V+K NAYG+G + L G + F V + Sbjct: 7 RPTYLKVDLEAILKNYQVLGKLQPNKTVMPVIKANAYGMGSVNVGHYLKKHGAEFFAVAT 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSH 122 ++E ++LR++ +I +L + P + + S L K + Sbjct: 67 LDEAIELRMHGIDTKILILGVVMPKDINKAIQHRVALTVPSYAWLNEAIKYLDEDLEKDL 126 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG RLG+ ++ + + + +H A AD+ S Q E Sbjct: 127 WLHVKIDTGMGRLGVKSAEDYQKTVALIQSHEHLIFEGVFTHFAQADE-DSPHTKEQYEI 185 Query: 182 FRTLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVV 236 F + +S+G +L + R GISLYG + + + Sbjct: 186 FENWVDTIPHPSYVHAQNSAGTILFDAPICNMVRTGISLYGYYPSEYVEEQTNAELYPSA 245 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 I+ I+ G+ VSYG + IA+ +GYADG+P + G + Sbjct: 246 EWITEIVDIKYLNIGDTVSYGSTYTAEKSEKIAILPVGYADGFPRMMQGTN--------- 296 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + G I+G++ MD M + ++ I VGD + + + L A T Sbjct: 297 ---VEVNGQQCTIIGRVCMDQMMIALPENEDINVGDKVTLLNREHSGPQSLLSHAKQQQT 353 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++L RIG R + Y Sbjct: 354 INYEVLCRIGRRVPRIY 370 >gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] Length = 896 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + + + ++K + YG G +IA L + V V +E Sbjct: 537 LEVNLNAVVDNLNHYRSFMKPTTKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVADE 596 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH--PYA 125 GV LR + I ++ K +FD +L P + S L K P Sbjct: 597 GVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGVAGFPVH 655 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG + ++ + SH +D D ++ Q F Sbjct: 656 VKLDTGMHRLGFDPNKDIDRLIARMQHQNAVIPRSVFSHFVGSDSDSFDEFSARQFALFD 715 Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + I + +S+GI P + R G+ LYG + N H + V T Sbjct: 716 EGSRKLQAAFPHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGIDSRNN--HIINNVCTL 773 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + + RDS+IA IGYADG L Sbjct: 774 KTTILQLRHVPAGDTVGYSRKGVIDRDSVIAAIPIGYADGLNRRLGNRRC---------- 823 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+TM D+T + GD ++IFG + + ++ A T Y++L Sbjct: 824 YCLVGGKRAEYVGNICMDVTMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDALDTIPYEVL 882 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 883 TCISNRVKRVY 893 >gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f] gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f] Length = 846 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 149/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 547 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 605 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 606 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIELFE 665 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P + + R GI LYG + N + V T Sbjct: 666 KGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVSTL 723 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 724 KTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RGNA 773 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 774 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLKTIPYEVL 832 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 833 TSISTRVKRVY 843 >gi|225567900|ref|ZP_03776925.1| hypothetical protein CLOHYLEM_03973 [Clostridium hylemonae DSM 15053] gi|225163301|gb|EEG75920.1| hypothetical protein CLOHYLEM_03973 [Clostridium hylemonae DSM 15053] Length = 388 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALY-NAGVQ 58 M + + +IDL A++ N M A+ VVK + YG G +IA L + Sbjct: 1 MKAYNRVCARIDLDAVEYNIEMMKNNVRDGAKMLGVVKTDGYGHGAVQIAKMLSPKDYMW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 F V +++E V LR + I VL I P Q + + ++ + + + Sbjct: 61 GFAVATLDEAVVLRHGGIEKPILVLGCIFPDQREDMIKHDIRMTLYTEEMAREVSELAVK 120 Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +++DTG +RLG + +EA D + + +H A AD+ Sbjct: 121 IGKQAYIHIKLDTGMSRLGFLIGEEAADIIERISKMPNLVMEGMYTHFAKADEIDKSFTG 180 Query: 177 VQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q+ + + ++S+GI+ P + L R GIS YG + Sbjct: 181 KQIRNYVWMKETLEKRGVAFTYYHCSNSAGIIDVPEANMDLVRAGISTYGLYPSEEVHKE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + P++ + + + ++ AG VSYGG R + IA +GY DGYP +LS Sbjct: 241 NVPLKPAMELISHVAHVKWVDAGTPVSYGGTYITDRRTKIATIPVGYGDGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I G PILG++ MD M D T+ ++ D + + G D + ++ Sbjct: 298 --------KGYVLIHGKKAPILGRVCMDQFMVDATEIDDVKYADKVTLVGNDGGEKLPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ + +G R + + Sbjct: 350 VLSGLSGRFNYEFVCDLGKRIPREF 374 >gi|254253815|ref|ZP_04947132.1| Alanine racemase [Burkholderia dolosa AUO158] gi|124898460|gb|EAY70303.1| Alanine racemase [Burkholderia dolosa AUO158] Length = 465 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 154/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A++ N + + +R AVVK NAYG G E+I P L + Sbjct: 95 RPIVAHIRPDAVRRNLAFIRRTAAQSRVWAVVKANAYGHGIERIYPGLAA--ADGIALLD 152 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + D + + V + Sbjct: 153 LDEAVRVRELGWDKPVLLLEGIFEPADVEWVDRHRLTVAVHCDEQLDLLIAAKPRQPIDI 212 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ QLERF Sbjct: 213 QLKMNSGMNRLGYRPDAFRAAWERAAAAPSIGTITLMMHFANADEGE---IDWQLERFDA 269 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 + G E ++A+S+G+L P H RPG LYG + + P+ +T + Sbjct: 270 ATAGIPG-ERTVANSAGVLWHPRAHRDWVRPGTILYGASPTGVARHIADTPLLPAMTLTS 328 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII ++ G+ V YG + R I V A GYADGYP G Sbjct: 329 RIIGVQTLEPGDTVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 377 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 378 AVDGVTTRVVGRVSMDMLTVDLTPCPHAGIGSSVELWGDRVKVDDVAEASGTIGYELMCA 437 Query: 361 IGTRYA 366 + R Sbjct: 438 LARRVP 443 >gi|257885752|ref|ZP_05665405.1| alanine racemase [Enterococcus faecium 1,231,501] gi|261207115|ref|ZP_05921804.1| alanine racemase [Enterococcus faecium TC 6] gi|289565238|ref|ZP_06445689.1| alanine racemase [Enterococcus faecium D344SRF] gi|293556893|ref|ZP_06675454.1| alanine racemase [Enterococcus faecium E1039] gi|293567805|ref|ZP_06679146.1| alanine racemase [Enterococcus faecium E1071] gi|294615126|ref|ZP_06695012.1| alanine racemase [Enterococcus faecium E1636] gi|294618734|ref|ZP_06698265.1| alanine racemase [Enterococcus faecium E1679] gi|257821608|gb|EEV48738.1| alanine racemase [Enterococcus faecium 1,231,501] gi|260078743|gb|EEW66445.1| alanine racemase [Enterococcus faecium TC 6] gi|289162894|gb|EFD10743.1| alanine racemase [Enterococcus faecium D344SRF] gi|291589390|gb|EFF21197.1| alanine racemase [Enterococcus faecium E1071] gi|291592068|gb|EFF23691.1| alanine racemase [Enterococcus faecium E1636] gi|291595023|gb|EFF26369.1| alanine racemase [Enterococcus faecium E1679] gi|291600977|gb|EFF31268.1| alanine racemase [Enterococcus faecium E1039] Length = 373 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAIETAEAAVAGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ Sbjct: 66 SNLDEGVELREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLE 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD ++Q Sbjct: 126 TPLSIHLKADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 186 KERFIEVLKKLPELPRYIHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+P + G Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + D+A Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 352 LGTIHYEVACGLGQRIPREY 371 >gi|300717006|ref|YP_003741809.1| alanine racemase, catabolic [Erwinia billingiae Eb661] gi|299062842|emb|CAX59962.1| Alanine racemase, catabolic [Erwinia billingiae Eb661] Length = 356 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 158/367 (43%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + +D +AL++N + ++R +VVK NAYG G +++ + F + Sbjct: 2 SRPIVATVDTSALRHNLAVARQAAPHSRVWSVVKANAYGHGIDRVWQSFAA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G E I D + Sbjct: 60 NLEEAILLRERGWKKPILLLEGFFHADELAILDQYRLTTSVHSNWQIQALAKAKLSAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG + ++ + + +++H A A+ Q R Sbjct: 120 IYLKVNSGMNRLGFAPEQVQQAWNKLRGLENVGEMTLMAHFAEAETSEGI---EQPLRRI 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SLA+S+ L P+ H RPGI LYG + S +Q V++ Sbjct: 177 EQAAEGLDCLRSLANSAATLWHPHTHHDWVRPGIILYGASPSGKWQDIASSGLQPVMSLN 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I+ G+ V YG + + + I V A GYADGYP G Sbjct: 237 SEIIAIQNLKTGDGVGYGSRYRAQGEQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++ G +G I+MDM D+T L +G ++++G +IK+D+VA ++GT Y+L+ Sbjct: 286 VWVDGVRTHTVGAISMDMITVDLTPCLQAGIGSQVELWGSNIKIDEVAESAGTVGYELMC 345 Query: 360 RIGTRYA 366 + TR Sbjct: 346 ALATRVP 352 >gi|157150127|ref|YP_001449734.1| alanine racemase [Streptococcus gordonii str. Challis substr. CH1] gi|189027393|sp|A8AVC4|ALR_STRGC RecName: Full=Alanine racemase gi|157074921|gb|ABV09604.1| alanine racemase [Streptococcus gordonii str. Challis substr. CH1] Length = 368 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 152/381 (39%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + +DL+A+ N + A + AVVK NAYG G ++ + + V Sbjct: 1 MKTSIHRPSQALVDLSAIHFNIEQLKAHLPQDVEKWAVVKANAYGHGAVAVSSYIDDI-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR +I +L + + ++S+ L Sbjct: 60 DGFCVSNIDEALELREGGLDKKILILGVSAIEVVPLAIQNKITLTVASLEWLDLLEASSL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+VD+G R+G ++ L N Q+ I +H A AD+ + Sbjct: 120 SLQGLVVHLKVDSGMGRIGFRDRQPLQEAINRLQVAGVQVEGIFTHFATADEADASKFEE 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F+ +++ + + +S+ L + R G +YG + + + Sbjct: 180 QLACFKGILAELDALPPIIHASNSATSLWHTDTVMNAVRLGDIIYGLNPSGSVLELPYDI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + ++ +++ AG V YG I +GYADG+ + G D Sbjct: 240 KPALSLVSELVHVKEVEAGADVGYGATYTADEGQFIGTIPLGYADGWTRDMQGFD----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 I G PI+G+I+MD + + + G + G I DVA Sbjct: 295 -------VLIDGQRCPIVGRISMDQITVRLPEKYPL--GTPVVFIGKSGTESISATDVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ I R + Y Sbjct: 346 KRGTINYEVVCLISDRVPRIY 366 >gi|291557577|emb|CBL34694.1| alanine racemase [Eubacterium siraeum V10Sc8a] Length = 379 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL++N++ + L+ AVVK NAYG + + L GV+ + V++ Sbjct: 6 KRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYYGVSN 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + EG KLR + I + + + SV S S GV P Sbjct: 66 LWEGEKLRQHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYAVSKGVKLP 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V+TG R+G+ Q+ + + D Q E+ Sbjct: 126 VHIKVNTGMTRVGIDSQQEMLDILAMPGLDCKAAYTHFAAADSLDPSDVEYTDRQQEKLM 185 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--VTAEAR 241 I+ KG+ +S GI+ ++ + R G+ LYG P +T ++ Sbjct: 186 K-IAKDKGLFIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFDMKSVMTVKSV 244 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + ++ AG +SYG ++ +AV IGYADGY S GK Sbjct: 245 VSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFS-----------SKGKML 293 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLL 358 I G + ++G++ MD T+ D+++ I+ GD + ++ + +D A T Y+L Sbjct: 294 INGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNASLIDTIGYELT 353 Query: 359 VRIGTRYAKF 368 + R + Sbjct: 354 CAVALRIPRV 363 >gi|241113131|ref|YP_002972966.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861339|gb|ACS59005.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 377 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 186/365 (50%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ + R AVVK +AYGLG E++ LY+ G + FFV E Sbjct: 23 LTIDLAALGRNYRKLVSMLASVRAGAVVKADAYGLGAERVGRTLYSEGCRHFFVAQFVEA 82 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 ++LR A+IFVL G+ PG E + ++PV++S+ Q +S P L Sbjct: 83 LRLRPALAHDAQIFVLNGLQPGNEIACAEMGVVPVLNSLAQWRQWSTAARILKRCLPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG +E + ++ I+SHLA ADD S N Q+ + Sbjct: 143 QFDTGMSRLGFPEEERAELAAALSGSTNVEILFIMSHLASADDMDSDQNGEQIAEMSRIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G + S A+S G+ LG YH L RPGI+LYGG + +PM+ VV+ ++ R Sbjct: 203 DEFPGFDISFANSGGVFLGDPYHGVLARPGIALYGGAPNAGEKNPMEPVVSLNVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG R++ +A A GYADG P L G + KG Sbjct: 263 TVPAGAKVGYGGAHVTQRETRLATIAAGYADGLPRCLGDR-----------GAVYFKGIR 311 Query: 307 VPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD DI+ + G +++ G L+D+A +GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSATVDISALPEGALTFGSLVEVLGRHQTLEDIACDAGTISYEILTGLGDR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YDRQY 376 >gi|291530912|emb|CBK96497.1| alanine racemase [Eubacterium siraeum 70/3] Length = 379 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL++N++ + L+ AVVK NAYG + + L GV+ + V++ Sbjct: 6 KRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYYGVSN 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + EG KLR + I + + + SV S S GV P Sbjct: 66 LWEGEKLRQHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYAVSKGVKLP 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V+TG R+G+ Q+ + + D Q E+ Sbjct: 126 VHIKVNTGMTRVGIDSQQEMLDIIAMPGLDCKAAYTHFAAADSLDPSDVEYTDRQQEKLM 185 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--VTAEAR 241 I+ KG+ +S GI+ ++ + R G+ LYG P +T ++ Sbjct: 186 K-IAKDKGLLIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFDMKSVMTVKSV 244 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + ++ AG +SYG ++ +AV IGYADGY S GK Sbjct: 245 VSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFS-----------SKGKML 293 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLL 358 I G + ++G++ MD T+ D+++ I+ GD + ++ + +D A T Y+L Sbjct: 294 INGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNASLIDTIGYELT 353 Query: 359 VRIGTRYAKF 368 + R + Sbjct: 354 CAVALRIPRV 363 >gi|291298088|ref|YP_003509366.1| alanine racemase [Stackebrandtia nassauensis DSM 44728] gi|290567308|gb|ADD40273.1| alanine racemase [Stackebrandtia nassauensis DSM 44728] Length = 366 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 158/372 (42%), Gaps = 24/372 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +DL + N ++ + +A +K N YG G A A + G V +++ Sbjct: 5 AEAVVDLGTIAANVEALAGRT-SAAVMPALKANGYGHGLVPAARACLDGGASRLGVATLD 63 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR A I D ++ ++S QL+ + L Sbjct: 64 EAMELRNSGVAAPILAWLVAPGLDLAAAVDADIELAVASREQLSAVA-DAGARHPARIHL 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLERFR 183 + DTG R G E + + I SHLACAD+P + + Q + FR Sbjct: 123 KADTGMGRGGAPRAEWQTLVDLAAKAQADGRIEIVGAFSHLACADEPGNPLTQSQDDNFR 182 Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + + LA+S+G+L P+ H+ L RPGI++YG + P++ +T Sbjct: 183 DFLDLLWAADVQPQWQHLANSAGLLAHPDTHYNLVRPGIAVYG-YPPVATEAPLRPAMTL 241 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 AR++L++ AG + YG R + +A+ +GYADG P + S Sbjct: 242 RARVVLVKTLPAGHGIGYGHTYVTKRPTRVAIVPLGYADGIPRSTSNR-----------A 290 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357 + + G PI G+++MD + D + GD ++ FG DI +D A T +Y++ Sbjct: 291 EVLVGGRRCPIRGRVSMDQVVV-EVDEGDVRAGDVVEFFGDGDITAEDWATWHDTISYEI 349 Query: 358 LVRIGTRYAKFY 369 L IG R + Y Sbjct: 350 LTSIGPRIPRRY 361 >gi|223043945|ref|ZP_03613986.1| alanine racemase [Staphylococcus capitis SK14] gi|222442660|gb|EEE48764.1| alanine racemase [Staphylococcus capitis SK14] Length = 382 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 162/382 (42%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R L ++L A+ NN+ + N L N +V+K N+YGLG K+A L G Sbjct: 2 SEKFYRSTYLNVNLDAILNNYQTFNQLHHNKTVISVIKANSYGLGSVKVAHHLMEHGASF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMS 117 F V +++E ++LR++ A++ VL I + + S L + Sbjct: 62 FAVATLDEAIELRMHGIDAKLLVLGVIPTKDISKAIQHRVALTVPSKAWLKEAIRNIPEK 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++D+G RLG+ ++E D K + +H A AD+P +N Sbjct: 122 NEKKLWLHAKIDSGMGRLGMKDVEEYKDVVDIINKKDDLVFEGVFTHFASADEPGDSMN- 180 Query: 177 VQLERFRTLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231 Q E F+ +++ + +S+ LL R GISLYG N Sbjct: 181 EQYEFFKDIVNQVEKPNYIHSQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVRDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ I+ ++ GE VSYG ++ IA+ +GYADGY + Sbjct: 241 LRPSAQLVTEIVQVKSLKVGETVSYGRTFTADKEMKIAILPVGYADGYLRAMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347 G + G+ ++G++ MD T+ + D +++GD + + I ++ +A Sbjct: 294 -----GAYVNVNGHQCEVVGRVCMDQTIVSVPD--DVKMGDKVILMDNHIDSPQSVESLA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 347 EKQHTINYEVLCNLSKRLPRIY 368 >gi|261380880|ref|ZP_05985453.1| alanine racemase [Neisseria subflava NJ9703] gi|284796357|gb|EFC51704.1| alanine racemase [Neisseria subflava NJ9703] Length = 352 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L+ N+ + L GN + AV+K +AYG G + A AL + F V + Sbjct: 2 RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+EGV+LR + I +L G+ E D + Sbjct: 60 VDEGVELRQNGIKNPIVLLEGVFEAAEYADVDRYDLWPAIGSQWQLEAFVHHEWQHLTTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRDWGRAGLALYGISPFGGVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP S + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ S +G ++++G I +++V+ +G Y++L I R Sbjct: 288 KRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVAGMIPYEILCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|134288204|ref|YP_001110367.1| alanine racemase [Burkholderia vietnamiensis G4] gi|134132854|gb|ABO59564.1| alanine racemase [Burkholderia vietnamiensis G4] Length = 365 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 161/367 (43%), Gaps = 23/367 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I ++ N L+ ++ AVVK NAYG G E++ P L + + Sbjct: 3 RPIVARIFPKNVRENLGLARRLTCGSQVWAVVKANAYGHGIERVFPGLSD--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE V++R + I +L GI P ++ + L + V QL S+ Sbjct: 61 LEEAVRVRALGWRKPILLLEGIFEPADLNVVVEHRLTVAVHCVDQLHMLSRSEP-RSPID 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + +++H A AD+ Q + F Sbjct: 120 IQLKMNSGMNRLGFRPDMYRQAWEEASDMSSIANIGLMTHFANADEGE---IDWQTDVFD 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239 G SLA+S+G+L P H RPG LYG + H P++ ++ E Sbjct: 177 AATQGLPG-TRSLANSAGVLWHPQSHRDWVRPGTILYGTSPTGASRHVARFPLRAAMSLE 235 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++II I+ E V YG +R I V A GYADGYP G Sbjct: 236 SQIIGIQSISPSETVGYGRTFTGSRRMRIGVVACGYADGYPRHA-----------PTGTP 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G ++G+++MDM D+T S +G ++++G ++ +DDVA ASGT Y+L+ Sbjct: 285 VLVDGVRTQVVGRVSMDMMTVDLTPCPSANIGSRVELWGSNVSVDDVAEASGTIGYELIC 344 Query: 360 RIGTRYA 366 + R Sbjct: 345 ALARRVP 351 >gi|299067425|emb|CBJ38624.1| alanine racemase 2, PLP-binding [Ralstonia solanacearum CMR15] Length = 368 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 93/361 (25%), Positives = 155/361 (42%), Gaps = 18/361 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I AL NN + + ++R AV+K NAYG G E+ L F + ++E V+ Sbjct: 2 IHGPALANNLQVVRRHAAHSRVWAVIKANAYGHGIERAYEGLRQ--ADGFGLLDLDEAVR 59 Query: 71 LRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR Q I +L G P ++ L + QL G L+++ Sbjct: 60 LRQLGWQGPILLLEGFFKPEDLALVEQYRLTTTVHCEEQLRMLELARLKG-PVSIQLKIN 118 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 TG +RLG + ++ + ++H + AD P QL F Sbjct: 119 TGMSRLGFAPAAYRAAWEHARAISGIGTIVHMTHFSDADGPRGI--DHQLAAFEQATQGL 176 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILI 245 G EASL++S+ L P+ H RPG+ LYG + + + +T ++ +I I Sbjct: 177 PG-EASLSNSAATLWHPSAHRDWVRPGVILYGASPTGVAADIEGTGLMPAMTLKSELIAI 235 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 + G + YG + + + I + A GYADGYP G D + + G Sbjct: 236 QDVQPGATIGYGSRFEAEQPMRIGIVACGYADGYPRHAPGWDGNY-------TPVLVDGV 288 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 ++G+++MDM D+ + VG + ++G + +D+VA A+GT Y+L+ + R Sbjct: 289 RTRMVGRVSMDMITVDLAEVPGARVGAPVTLWGQGLPIDEVAHAAGTVGYELMCALAPRV 348 Query: 366 A 366 Sbjct: 349 P 349 >gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17] gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17] Length = 831 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 155/373 (41%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L+A+ N + + + + ++K + YG G +IA L + V V Sbjct: 470 TTLEVNLSAVVKNLNHYRSFMKAETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVA 529 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + I ++ K +FD +L P + S L K +P Sbjct: 530 DEGVTLRRNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGYP 588 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG Q+ ++ + SH +D D ++ Q Sbjct: 589 VHIKLDTGMHRLGFDPRQDMERLIDRLRHQNAIIPRSVFSHFVGSDNDGFDEFSARQFAL 648 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F I + +S+GI P + R G+ LYG + N+ + V Sbjct: 649 FDEGSKQLQAAFEHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNE--IIHNVS 706 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ +R+ AG+ V Y + L DS++A IGYADG LS Sbjct: 707 TLKTTILQMRRVPAGDTVGYSRKTVLEHDSVVAAIPIGYADGLDRHLSNRH--------- 757 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +G I MD+ M D+T + GD ++IFG + + ++ T Y+ Sbjct: 758 -GYCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDIVDTIPYE 815 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 816 VLTGISNRVKRVY 828 >gi|218780053|ref|YP_002431371.1| alanine racemase [Desulfatibacillum alkenivorans AK-01] gi|218761437|gb|ACL03903.1| alanine racemase [Desulfatibacillum alkenivorans AK-01] Length = 363 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL AL +N+ + L+ + +VVK +AYG G ++ A L + G V + Sbjct: 6 LEIDLKALAHNYRVLADLAGPGTKMVSVVKADAYGHGLKQAARTLVDCGTYALGVFDPAD 65 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 +R I L GI P + + N+ VI S+ S+ + G + + Sbjct: 66 AAVIRQEGIHVPIVSLSGIFPWEAEDAAKNNIDAVIFSMEAAQALSQAFLEKGETGNVII 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +VDTG RLG+ ++ F K +++ I SHLA ++ P Q+E FR+ Sbjct: 126 KVDTGMGRLGIFPEDLPAFVEALAPLKGIRVTGIASHLAASEIPDHPHTKSQVEAFRS-- 183 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEARIIL 244 + I +LA+S +L G L RPGI+LYG + V+T + RII Sbjct: 184 ASLSMINDTLANSGAVLEGLAKGVPLARPGIALYGSAPDPEMKGADLLKPVMTFKTRIIS 243 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 ++ G +SYG +R SLIA +GYADGY L+ G + G Sbjct: 244 LKTLPKGSPISYGMTFTTSRPSLIAAVPVGYADGYFRRLAN-----------KGVAIVHG 292 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVR 360 VP++G + M++TM D+T ++ GD + + G + D++A ++GT +Y++ Sbjct: 293 KRVPVVGTVCMNLTMLDVTGLDEVQPGDEVVLLGEKDGQRVTGDELAASAGTISYEIYCS 352 Query: 361 IGTRYAKFY 369 +G + Y Sbjct: 353 LGHANPRQY 361 >gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22] gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22] Length = 846 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 149/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 547 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 605 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 606 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIELFE 665 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P + + R GI LYG + N + V T Sbjct: 666 KGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVSTL 723 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 724 KTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RGNA 773 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 774 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLETIPYEVL 832 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 833 TSISTRVKRVY 843 >gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A] Length = 846 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 149/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 487 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 546 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 547 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 605 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 606 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIELFE 665 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P + + R GI LYG + N + V T Sbjct: 666 KGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVSTL 723 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 724 KTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RGNA 773 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 774 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLETIPYEVL 832 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 833 TSISTRVKRVY 843 >gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483] gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483] Length = 821 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 149/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L A+ N + ++ + +VK +AYG G +IA +L V V + Sbjct: 462 LEVNLGAMVANLNHYRSMLRHPETKMICMVKASAYGAGSYEIAKSLQEHHVDYLAVAVAD 521 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPY 124 EG +LR A I ++ K +FD L P + + L K + P Sbjct: 522 EGSELRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPI 580 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG ++++ N+ + SH +D Q+E F Sbjct: 581 HVKLDTGMHRLGFAVEDIPLLIRRLKNQSAVIPRSVFSHFVGSDSSQFDAFTRGQIELFE 640 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +++GI P + + R GI LYG + N + V T Sbjct: 641 KGSQELQAAFSHKILRHICNTAGIERFPEAQYDMVRLGIGLYGVSPIDN--SIIHNVSTL 698 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR + V Y L R S IA IGYADG L Sbjct: 699 KTTILQIRDVPQEDTVGYSRMGHLVRPSRIAAIPIGYADGLNRHLG----------RGNA 748 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+TD GD IFG D+ + ++ T Y++L Sbjct: 749 YCLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDDLPITVLSDKLETIPYEVL 807 Query: 359 VRIGTRYAKFY 369 I TR + Y Sbjct: 808 TSISTRVKRVY 818 >gi|86144171|ref|ZP_01062508.1| alanine racemase [Leeuwenhoekiella blandensis MED217] gi|85829433|gb|EAQ47898.1| alanine racemase [Leeuwenhoekiella blandensis MED217] Length = 365 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 138/367 (37%), Gaps = 19/367 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++DL AL +N+ + L + + VVK AYG +A L G+ V E Sbjct: 6 LELDLNALSHNYDYLRSKLEPDVKMLGVVKAYAYGSASVAVAKKLEEKGIDYLAVAYTAE 65 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126 GV LR + I VL+ ++II + S F + G+ P + Sbjct: 66 GVALREAGIKTPILVLHPQIENFDQIIKHQLEPSIYSFRVLKAFTEITEAQGLKAYPIHI 125 Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + +TG NRLG + E + L SL A D Q+E F Sbjct: 126 KFNTGLNRLGFKDVNEKDILEQLHATEALKVKSLFSHLAASEDPNERTFTLQQIENFENN 185 Query: 186 ISHYK---GIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 H G L ++S I+ P F + R GI LYG + + ++ V T + Sbjct: 186 AKHMIAGLGYTPMLHQSNTSAIINYPQAQFDMVRSGIGLYGYGNTQEEDLKLKPVATLKT 245 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I I GE V Y + A IG+ADG G Sbjct: 246 VISQIHDISIGETVGYNRAHTAAKLGRSATLPIGHADGISRAYG----------KGRGYV 295 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G PI+G + MDM M D+T E GD + IFG ++ + Y+L+ Sbjct: 296 MINGKKAPIIGNVCMDMIMVDVTKI-DCEEGDEVVIFGKGASAVALSARIKSIPYELITA 354 Query: 361 IGTRYAK 367 + R + Sbjct: 355 VSQRIER 361 >gi|228473937|ref|ZP_04058678.1| alanine racemase [Capnocytophaga gingivalis ATCC 33624] gi|228274451|gb|EEK13292.1| alanine racemase [Capnocytophaga gingivalis ATCC 33624] Length = 367 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 150/373 (40%), Gaps = 22/373 (5%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTS 64 L+I L L++N + L R AVVK N+YG +A L +F V Sbjct: 4 TTLEIHLDNLQHNVRQLKKHLKEGTRFLAVVKANSYGNSSVAVAQYLEKKDLADEFAVAF 63 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SH 122 EG++LR I + + + I NL P + S +T + + Sbjct: 64 TSEGIELRKAGVTRPILIFHPQL-VDFEDIVRYNLEPTLYSKRLITHFIDFAKEKQLNQY 122 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P+ L+ ++G NRLG S++E + +++L + LA D + Q+ Sbjct: 123 PFHLKCNSGMNRLGFSVEEIDEACELLKGHEELKVRTAFSHLLASEDLQARPFMEKQIAL 182 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F+ I ++SGIL P HF + R GI +YG + + + Sbjct: 183 FKAFQKKLENHFSHKIIYHNCNTSGILNYPEAHFDMVRSGIGMYGFANDPRLQKDFKPIT 242 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I I G+ V Y + + IA ++G+ADG Sbjct: 243 TLKSIISQIHTIQKGDYVGYNFGFQAQKPMEIATISVGHADGLNRIYG----------KE 292 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G FIK PI+G + MDM M DIT E G+ + IF + +A + T +Y+ Sbjct: 293 VGFVFIKDKKCPIVGNVCMDMIMVDITGL-GCEEGEEVVIFDERHTSETLAETAKTISYE 351 Query: 357 LLVRIGTRYAKFY 369 L+ + R + + Sbjct: 352 LITSLSRRIKRVF 364 >gi|322412634|gb|EFY03542.1| alanine racemase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 366 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 155/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENIASAQEHIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + ++S+ L Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAITHQVTVTVASLEWLAMAKPEWP 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+GL +D ++ I +H A AD+ + Sbjct: 120 DLKGLKVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGTEVEGIFTHFATADEADTVKFEQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QL F L+ + + +S+ L F R GI +YG ++ P+ Sbjct: 180 QLTFFTNLVDQLADKPSLVHASNSATSLWHSETIFNAVRLGIVMYGLNPSGSELALPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + E+ ++ +++ GE V YG K + IGYADG+ + G Sbjct: 240 KEAFNLESVLVHVKEIAPGETVGYGATYKAQTREYVGTVPIGYADGWTRDMQGFT----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 ++G I+G+++MD + + + G + + G D I D+A Sbjct: 295 -------VLVEGQTCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISATDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRIPRVY 366 >gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 822 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 155/373 (41%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ +N + + + + +VK +AYG G +IA L + V V Sbjct: 461 TTLEVNLNAVVDNLNYYRSFMKPETKMVCMVKASAYGAGAVEIAKTLQDHQVDYLAVAVA 520 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR A I ++ +F+ +L P + S L P Sbjct: 521 DEGVDLRKAGITANIMIMNPEMSS-FPTLFEYDLEPEVYSFRLLEALIHEAEKEGVTHFP 579 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + + + SH +D D ++ Q E Sbjct: 580 IHVKLDTGMHRLGFDPEKDMPLLVERLKRQSAVIPRSVFSHFVGSDSDDFDAFSARQYEL 639 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F + I + +S+GI P+ H ++ R G+ LYG + N+ + Sbjct: 640 FLKGSAQLQQAYSHKILRHICNSAGIEHFPDRHLEMVRLGLGLYGINSRNNEIL--HNIS 697 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ I + + V Y + +LTRDS IA IGYADG L Sbjct: 698 TLKTTILQIHEVPKEDTVGYSRKGRLTRDSRIAALPIGYADGLDRKLG----------CG 747 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 + G P +G I MD+ M D+TD GD IFG D+ + ++ A GT Y+ Sbjct: 748 RAYCLVNGRRAPYVGNICMDVCMIDVTDI-DCREGDTAIIFGDDLPVTVLSDAVGTIPYE 806 Query: 357 LLVRIGTRYAKFY 369 +L + R + Y Sbjct: 807 ILTGVSARVKRVY 819 >gi|313672870|ref|YP_004050981.1| alanine racemase [Calditerrivibrio nitroreducens DSM 19672] gi|312939626|gb|ADR18818.1| alanine racemase [Calditerrivibrio nitroreducens DSM 19672] Length = 365 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 166/375 (44%), Gaps = 25/375 (6%) Query: 4 NEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQD 59 N LR IDL NN + LS + V+K N YG G ++A L ++ ++ Sbjct: 2 NRSLRGTYALIDLKRYLNNLNIARKLS-KSYITPVIKANGYGHGAIELARFTLEHSDIRI 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKLMS 117 F V + EEGVKLR ++ ++ G + LI + F L Sbjct: 61 FCVATFEEGVKLRYGIGESAEIIVLGFVDEYFFNEVITNNLLINIYDDEIAFRFNKYLEK 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + +P ++++DTG NRLG + K + ++ + D S+ Sbjct: 121 KRLKYPVSIKIDTGMNRLGF---DVSINFIEFREKYPNLVPKVLMSHLSSPDSDLDYTSL 177 Query: 178 QLERFRTLISHYKGIEASLAS---SSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 Q++RF ++ K I + + +S LL F +RPGI YG K + ++ Sbjct: 178 QIDRFSSVAERAKKIFPYIKTSLFNSPALLSFENSFDYSRPGILTYGFV-KSDHDIGIKP 236 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ ++II ++ E V Y + +++ V IGYADGY LS Sbjct: 237 VMKIFSKIIHVKSLDKNESVGYNRTYITGKKTILGVLPIGYADGYNRLLSNR-------- 288 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 G ++ GY PI+G+I MDMTM DI+D + G ++I G +I+ D++A T + Sbjct: 289 ---GFVYVDGYKCPIVGRICMDMTMIDISDLPEGKWGKEVEILGDNIRADEMAKMCNTIS 345 Query: 355 YDLLVRIGTRYAKFY 369 Y++L I R + Y Sbjct: 346 YEILTSISPRIPRIY 360 >gi|319789312|ref|YP_004150945.1| alanine racemase [Thermovibrio ammonificans HB-1] gi|317113814|gb|ADU96304.1| alanine racemase [Thermovibrio ammonificans HB-1] Length = 357 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 162/367 (44%), Gaps = 26/367 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVE 66 ++ L L N+ + LSG + AVVK NAYG G +A L V F V + Sbjct: 4 WAEVHLDRLLYNYRQVEKLSGPKKLIAVVKANAYGHGSVAVARFLQEQTAVSAFAVATYA 63 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV+LR Q I V+ + + L+PV+ F+ + + P+ + Sbjct: 64 EGVQLREAGIQRPIIVMSSTLEEELGRAREFRLMPVVYD-----FWELERAKELEVPFHV 118 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++DTG RLG + + + + +L+ +++H AD+ + Q + F + Sbjct: 119 KLDTGMGRLGFLPSQWQELLC---SLRGAKLAGVMTHFPSADEDP-EFTAGQAKLFGEFV 174 Query: 187 SHYKGIEASLASSSGIL----LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 KG L LG N F +R G++LYG ++ V+ +ARI Sbjct: 175 KALKGAFPKLWVHCDNSAALPLGLNGLFTHSRVGLALYGSKPFGGYPASLKQVMEVKARI 234 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +++ G VSYG + + V + GYADG P +LSG G + Sbjct: 235 ISVKELPPGHSVSYGRTYTTSGKERVGVVSFGYADGLPRSLSGR-----------GSFIV 283 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G PI G++ MDMT+ + ++ + G + G ++ +++A +GT Y+L+ RI Sbjct: 284 NGRRCPIRGRVCMDMTVISLEGVVAGKGG-VATVTGLELPFEELARLAGTIPYELMCRIS 342 Query: 363 TRYAKFY 369 R + Y Sbjct: 343 PRVERVY 349 >gi|24112577|ref|NP_707087.1| alanine racemase [Shigella flexneri 2a str. 301] gi|30062707|ref|NP_836878.1| alanine racemase [Shigella flexneri 2a str. 2457T] gi|24051477|gb|AAN42794.1| alanine racemase 2 [Shigella flexneri 2a str. 301] gi|30040955|gb|AAP16685.1| alanine racemase 2 [Shigella flexneri 2a str. 2457T] gi|281600603|gb|ADA73587.1| Alanine racemase [Shigella flexneri 2002017] gi|313649368|gb|EFS13799.1| alanine racemase [Shigella flexneri 2a str. 2457T] gi|332760272|gb|EGJ90562.1| alanine racemase [Shigella flexneri K-671] gi|333019431|gb|EGK38714.1| alanine racemase [Shigella flexneri K-304] Length = 356 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGAP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|283832821|ref|ZP_06352562.1| alanine racemase [Citrobacter youngae ATCC 29220] gi|291071417|gb|EFE09526.1| alanine racemase [Citrobacter youngae ATCC 29220] Length = 356 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 155/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL ALK N + +AR +VVK NAYG G E++ AL F + + Sbjct: 3 RPILASIDLQALKQNLAITRQAAPDARVWSVVKANAYGHGIERVWNAL--GTTDGFAMLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G + ++D + + Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHADDLKVYDKYRLTTCVHSNWQLKALQNARLNAPLDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG ++SH A A+ P+ ++ Sbjct: 121 YLKVNSGMNRLGFLPDRVSTVWQQLRAMPNVGEMTLMSHFADAEHPNGIQEAMTRI---A 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SL++S+ L P HF RPGI LYG + + ++ V+T + Sbjct: 178 QATEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLKPVMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I+ AG+ V YGG+ + + I + A GYADGYP G Sbjct: 238 EIIGIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYPRHA-----------PSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 287 LVDGVRTTTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVASAAGTVGYELMCS 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LALRVP 352 >gi|299822355|ref|ZP_07054241.1| alanine racemase [Listeria grayi DSM 20601] gi|299815884|gb|EFI83122.1| alanine racemase [Listeria grayi DSM 20601] Length = 368 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 155/378 (41%), Gaps = 28/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++++ A++ N + A AVVK NAYG G ++A +AG F V Sbjct: 6 HRPTWIEVNGDAIRANITNEKAHLPAETAVWAVVKANAYGHGIIEVAKIAKSAGADGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR + + ++ G P + + I + ++ + ++L Sbjct: 66 AILDEALALREAGFTSELILVLGAVPAEYANLAAEKQISL--TLFDENWLTELPVLTAKL 123 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++DTG RLG EAL + L + I +H A AD + QL + Sbjct: 124 SLHVKLDTGMGRLGFRNGEALKRVSTKLAEQPLLEWEGIYTHFATADQKDTTYYEEQLAK 183 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F L S K + +SS LL F R GI++YG T +Q Sbjct: 184 FEGLFSEIKPRPRFVHVANSSAALLHDQTGFNAVRFGIAMYGLTPSDEIADILPFELQPA 243 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +I+ +++ AG+ VSYG + ++ +A IGYADG+ +G Sbjct: 244 LSLYTKIVQVKQLQAGDCVSYGATYQAAQEEWVATLPIGYADGWIRKYTGFSL------- 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 ++G I+G++ MD + + + G + + G I ++ A Sbjct: 297 -----LVEGEYAEIVGRVCMDQLIIRLPRYYPV--GTKVTLIGKSGEKQITAEEAARKIE 349 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 350 TIDYEVTCLLSERIPRIY 367 >gi|257878844|ref|ZP_05658497.1| alanine racemase [Enterococcus faecium 1,230,933] gi|257881480|ref|ZP_05661133.1| alanine racemase [Enterococcus faecium 1,231,502] gi|257890702|ref|ZP_05670355.1| alanine racemase [Enterococcus faecium 1,231,410] gi|258615086|ref|ZP_05712856.1| alanine racemase [Enterococcus faecium DO] gi|293560263|ref|ZP_06676760.1| alanine racemase [Enterococcus faecium E1162] gi|294621797|ref|ZP_06700956.1| alanine racemase [Enterococcus faecium U0317] gi|314938934|ref|ZP_07846199.1| alanine racemase [Enterococcus faecium TX0133a04] gi|314943515|ref|ZP_07850282.1| alanine racemase [Enterococcus faecium TX0133C] gi|314948190|ref|ZP_07851584.1| alanine racemase [Enterococcus faecium TX0082] gi|314951550|ref|ZP_07854596.1| alanine racemase [Enterococcus faecium TX0133A] gi|314991587|ref|ZP_07857063.1| alanine racemase [Enterococcus faecium TX0133B] gi|314994920|ref|ZP_07860047.1| alanine racemase [Enterococcus faecium TX0133a01] gi|257813072|gb|EEV41830.1| alanine racemase [Enterococcus faecium 1,230,933] gi|257817138|gb|EEV44466.1| alanine racemase [Enterococcus faecium 1,231,502] gi|257827062|gb|EEV53688.1| alanine racemase [Enterococcus faecium 1,231,410] gi|291598629|gb|EFF29687.1| alanine racemase [Enterococcus faecium U0317] gi|291605713|gb|EFF35150.1| alanine racemase [Enterococcus faecium E1162] gi|313590902|gb|EFR69747.1| alanine racemase [Enterococcus faecium TX0133a01] gi|313593871|gb|EFR72716.1| alanine racemase [Enterococcus faecium TX0133B] gi|313596244|gb|EFR75089.1| alanine racemase [Enterococcus faecium TX0133A] gi|313597887|gb|EFR76732.1| alanine racemase [Enterococcus faecium TX0133C] gi|313641643|gb|EFS06223.1| alanine racemase [Enterococcus faecium TX0133a04] gi|313645323|gb|EFS09903.1| alanine racemase [Enterococcus faecium TX0082] Length = 373 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAIETAEAAVAGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ Sbjct: 66 SNLDEGVELREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLE 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD ++Q Sbjct: 126 TPLSIHLKADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 186 KERFIEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+P + G Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + D+A Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 352 LGTIHYEVACGLGQRIPREY 371 >gi|205352531|ref|YP_002226332.1| D-amino acid dehydrogenase-Alanine racemase fusion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272312|emb|CAR37191.1| D-amino acid dehydrogenase-Alanine racemase fusion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627589|gb|EGE33932.1| D-amino acid dehydrogenase-Alanine racemase fusion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 793 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 440 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 496 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 497 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 556 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 557 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 616 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 617 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 673 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 674 SEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 722 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 723 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 782 Query: 360 RIGTRYA 366 + R Sbjct: 783 AVAPRVP 789 >gi|257867063|ref|ZP_05646716.1| alanine racemase [Enterococcus casseliflavus EC30] gi|257873398|ref|ZP_05653051.1| alanine racemase [Enterococcus casseliflavus EC10] gi|257801119|gb|EEV30049.1| alanine racemase [Enterococcus casseliflavus EC30] gi|257807562|gb|EEV36384.1| alanine racemase [Enterococcus casseliflavus EC10] Length = 373 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + ID TA+ N + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAIIDTTAITENIKHEIAHLPSETFLFAVVKANGYGHGAVQTALAAKEGGADGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---SCG 119 +++E ++LR I +L ++ ++ +L ++S+ L + Sbjct: 66 ATIDEAIELREAGITDPILILGVVNVCDITLLTTYDLSFPVASMDWLIEAGAYLEENPLN 125 Query: 120 VSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++VDTG R+G +++E + + I +H + AD + Q Sbjct: 126 KPLKVHIKVDTGMGRIGFLTVEEVRQAILWLEDHPSFEWEGIFTHFSTADQADTSYWETQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 +RF+ +++ + + +S+ L + R GI++YG +++ ++ Sbjct: 186 HQRFKEVLTVLPYLPTYIHTGNSATSLWHKEAVGNMVRFGIAMYGLNPSGHALSEPFSLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ + +I ++ G + YG R I IGYADG+ + G Sbjct: 246 PALSLVSELIQVKLLEKGAGIGYGETYITPRQEWIGTVPIGYADGWLRKMQGFSI----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALA 349 ++G I+G++ MD M + + VG + + G I + DVA Sbjct: 301 -------LVEGERCEIVGRVCMDQLMIRLPRAF--AVGTPVTLIGENHGEQITMQDVADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 LETIHYEVACTLSARIPREY 371 >gi|193215478|ref|YP_001996677.1| alanine racemase [Chloroherpeton thalassium ATCC 35110] gi|193088955|gb|ACF14230.1| alanine racemase [Chloroherpeton thalassium ATCC 35110] Length = 387 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 I L L++N + A G +R A+VK NAYG K+APAL GV DF V Sbjct: 17 NLSEALISLGNLRHNARQIKAQIGQSRRLMAIVKANAYGHNAGKVAPALVQEGVSDFGVA 76 Query: 64 SVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LM 116 ++ E + LR + + + + + + I + + + ++ Sbjct: 77 NINEAIHLRKALQAAQAREDSQILAFASPLECQMPFYLQHEIDLTVTNFETAKLAEAVSK 136 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + G + L++DTG RLG+ +E L I +H + + + Sbjct: 137 NHGKNLTVHLKIDTGMGRLGIQPREGFALARYVEASPYLNLKGIYTHFSDSGEDL-AFTR 195 Query: 177 VQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229 QLE ++ L+S ++ + A+S I+ + + + RPGI LYG T + + Sbjct: 196 NQLEIYKKLVSEFEHEAKRTVLKHAANSGAIISDNDTYLDMVRPGILLYGYTPAKSLTTA 255 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ +A ++ + G VSYG + TR + +A ++GYADGY LS Sbjct: 256 LDLRRVMQFQAHVLFTKWVEKGATVSYGRRWIATRRTRVATVSVGYADGYHRALSN---- 311 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVAL 348 K I G + +G +TMD M + + S++VGD + +FG + +D+A Sbjct: 312 -------KAKVCINGNLYEQIGSVTMDQIMVSLGEDSSVQVGDPVVLFGWDGLGANDLAE 364 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT Y+LL + R + + Sbjct: 365 QIGTIGYELLCAVSPRVKRVF 385 >gi|261340176|ref|ZP_05968034.1| alanine racemase [Enterobacter cancerogenus ATCC 35316] gi|288317692|gb|EFC56630.1| alanine racemase [Enterobacter cancerogenus ATCC 35316] Length = 356 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 161/371 (43%), Gaps = 24/371 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QD 59 M +L DL ALK+N + + +R +VVK NAYG G ++I AL G Sbjct: 1 MSRPVLAQL--DLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWGAL---GATDG 55 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F + +++E + LR + I +L G + + D + + Sbjct: 56 FALLNLDEAILLRERGWKGPILLLEGFFHADDLPLLDKYRLTTSLHSNWQIKALQDAKLH 115 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+V++G NRLG + N K +++H A A+ P +++ Sbjct: 116 APLDIYLKVNSGMNRLGFQPERVHTVWQQLRNLKNVGEMTLMAHFADAEKPDGIADAMVR 175 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTV 235 + SL++S+ L P HF RPGI LYG + + ++ V Sbjct: 176 V---EQAAEGLDCPRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWQDIANSGLKPV 232 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + II ++ AG+ V YG + + T + I + A GYADGYP Sbjct: 233 MTLRSEIIGVQTLKAGDTVGYGSRYRATGEQRIGIVACGYADGYPRIA-----------P 281 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ++ G +G ++MDM D+T +G ++++G ++K+DDVA A+GT Y Sbjct: 282 SGTPVWVDGVRTGTVGTVSMDMMAIDLTPCPQAGIGTPVELWGNEVKIDDVASAAGTVGY 341 Query: 356 DLLVRIGTRYA 366 +L+ + R Sbjct: 342 ELMCALAPRVP 352 >gi|148984140|ref|ZP_01817435.1| alanine racemase [Streptococcus pneumoniae SP3-BS71] gi|147923429|gb|EDK74542.1| alanine racemase [Streptococcus pneumoniae SP3-BS71] gi|301800506|emb|CBW33145.1| alanine racemase [Streptococcus pneumoniae OXC141] Length = 367 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG +N + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLNLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|313893858|ref|ZP_07827424.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412] gi|313441422|gb|EFR59848.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412] Length = 374 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 167/382 (43%), Gaps = 25/382 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 ++ L I+ + ++ N + +L + + AV+K N YG G + G + Sbjct: 3 NTMRPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESL 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V EE V LR I++L P +++ DTN IP + L K+ + Sbjct: 63 AVAIPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLDALDKVADNHD 122 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + A+ VDTG +R+G+ ++A++F + + ++ SH++ AD Q Sbjct: 123 MIIRIAVAVDTGMHRIGIKPEDAVEFIKRVESYENLEVDGFFSHMSNADAADQTHAHSQA 182 Query: 180 ERFRTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HP 231 +F ++ K + LA+S+G+L + F RPGI YG ++ Sbjct: 183 MKFHRMVDEIKAFRPNADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLG 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V++ + ++ ++ AGE + YG IA +GYADGYP +LS Sbjct: 243 LKPVLSFHSEVVHVQHVPAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR----- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G I G P++G+I MD M + D+++++ GD + + G I ++A Sbjct: 298 ------GTVLIHGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 + T Y++ R + Y Sbjct: 352 ALASTIPYEIFCGFSERVPRQY 373 >gi|226939283|ref|YP_002794354.1| DadB [Laribacter hongkongensis HLHK9] gi|254802367|sp|C1DBE8|ALR_LARHH RecName: Full=Alanine racemase gi|226714207|gb|ACO73345.1| DadB [Laribacter hongkongensis HLHK9] Length = 359 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 163/371 (43%), Gaps = 25/371 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV-- 62 +R +DL A+++N+ A S + AV+K +AYG G E++A AL V Sbjct: 3 RPIRATLDLAAIRHNYQQAKACSPESFAFAVIKADAYGHGYEQVAAAL----AVWPTVLP 58 Query: 63 -TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 ++ LR + I +L G E + V + K S Sbjct: 59 SSTSSRARTLREAGLRQPILLLEGCFDRAELEEAARLQLTVPFHAAHQFDWLKQGSLPAP 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+++TG NRLG EA + +L+ +++H A AD + QL R Sbjct: 119 LEVMLKLNTGMNRLGFRPDEAPRAAAWLQARNDIRLAGLMTHFATAD--GDPGIAAQLSR 176 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTA 238 F ++ G+ + +A+S+ ++ P Q RPGI LYG + ++S ++ + Sbjct: 177 FDE-VNASLGLPSCVANSAALMRHPASRRQYVRPGIMLYGASPFADQSAAELGLRPAMRL 235 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 EA II ++ AG+ V YG R I V A GYADGYP G Sbjct: 236 EADIIGVQSLQAGDAVGYGATFVADRPMRIGVVACGYADGYPR-----------VAPAGT 284 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDDVALASGTTNYDL 357 I G ++G+++MDM D+T VGD + ++ G + +DDVA A+GT Y+L Sbjct: 285 PCAIGGQPARLVGRVSMDMLTIDLTSLPQAGVGDRVTLWGGDGVSIDDVATAAGTIGYEL 344 Query: 358 LVRIGTRYAKF 368 + + R + Sbjct: 345 MCALAPRVPRR 355 >gi|91210403|ref|YP_540389.1| alanine racemase [Escherichia coli UTI89] gi|117623404|ref|YP_852317.1| alanine racemase [Escherichia coli APEC O1] gi|218558114|ref|YP_002391027.1| alanine racemase [Escherichia coli S88] gi|237705146|ref|ZP_04535627.1| alanine racemase 2 [Escherichia sp. 3_2_53FAA] gi|91071977|gb|ABE06858.1| alanine racemase 2, catabolic [Escherichia coli UTI89] gi|115512528|gb|ABJ00603.1| alanine racemase 2, catabolic [Escherichia coli APEC O1] gi|218364883|emb|CAR02579.1| alanine racemase 2, PLP-binding [Escherichia coli S88] gi|222032985|emb|CAP75725.1| lanine racemase, catabolic [Escherichia coli LF82] gi|226899903|gb|EEH86162.1| alanine racemase 2 [Escherichia sp. 3_2_53FAA] gi|294490907|gb|ADE89663.1| alanine racemase [Escherichia coli IHE3034] gi|307627292|gb|ADN71596.1| alanine racemase [Escherichia coli UM146] gi|312945816|gb|ADR26643.1| alanine racemase [Escherichia coli O83:H1 str. NRG 857C] gi|315288597|gb|EFU47995.1| alanine racemase [Escherichia coli MS 110-3] gi|323949699|gb|EGB45585.1| alanine racemase [Escherichia coli H252] Length = 356 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I A+ G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|315221233|ref|ZP_07863156.1| alanine racemase [Streptococcus anginosus F0211] gi|315189592|gb|EFU23284.1| alanine racemase [Streptococcus anginosus F0211] Length = 368 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + +DL A+ N + A N AVVK +AYG G + + V Sbjct: 1 MKTSNHRPTKAVVDLAAISFNIKQIAAHIPNDVEKWAVVKADAYGHGAVAVTRY-IESIV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E V+LR +I VL + + + ++S+ + K Sbjct: 60 DGFCVSNIDEAVELRDAGITKKILVLGVSDVHAISLAIERKVTCTVASLEWIDLLLKSNI 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 S +++D+G R+G + + K Q+ I +H A AD+ +H Sbjct: 120 DVASLVVHIKIDSGMGRIGFRDSQDAQEAIHRLEKAGAQVEGIFTHFATADEADTHKFEA 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL RF+ ++ + + + +S+ L + R G +YG + + M Sbjct: 180 QLARFKEILEQLETVPPIVHASNSATTLWHAETVMKAVRLGDIIYGLNPSGRTLQLPYEM 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + ++ +++ AG V YG I +GYADG+ + G + Sbjct: 240 KPALSLVSELVHVKQLEAGADVGYGATYTSENSQYIGTIPLGYADGWTRDMQGFN----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 I G PI+G+++MD + + +G + G I DVA Sbjct: 295 -------VLIDGQPCPIVGRVSMDQITVRLPKAYP--IGTPVVFIGESSKKSISATDVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ I R + Y Sbjct: 346 KRGTINYEVVCLISDRVPRVY 366 >gi|309798696|ref|ZP_07692961.1| alanine racemase [Streptococcus infantis SK1302] gi|308117639|gb|EFO55050.1| alanine racemase [Streptococcus infantis SK1302] Length = 367 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 158/381 (41%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGV 57 M + + + I L A++ N M A AVVK NAYG G +A A+ + V Sbjct: 1 MKTSPHRPTKALIHLEAIRYNIQQMGAHIPQDTLKWAVVKANAYGHGAVAVAMAIQD-DV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR +I +L + D ++ ++ + + S Sbjct: 60 YGFCVSNIDEAIELRQAGISKKILILGVSEVESLSLAKDFDITLTVAGLEWIQKLIATES 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L++D+G R+G + + + I +H A AD+ S Sbjct: 120 DLSGLTVHLKIDSGMGRIGFRSASEAEEAQTLLKEHGANVEGIFTHFATADEESDSYFKE 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QLE F+ +++ + + ++S+ L F R G S+YG + + + Sbjct: 180 QLEFFKEILAGLQEVPELVHASNSATTLWHAETIFSAVRMGDSMYGLNPSGQVLKLPYEL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T E+ I+ ++ AG + YG + + +IA IGYADG+ + Sbjct: 240 KPALTLESAIVHVKTVPAGACMGYGATYQADGEQVIATVPIGYADGWTRDMQNFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G + PI+G+++MD + + G + + G +I +VA+ Sbjct: 295 -------VLVDGQLCPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATNVAV 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY+++ + R + Y Sbjct: 346 YRGTINYEVVCLLSDRIPREY 366 >gi|260558409|ref|ZP_05830605.1| alanine racemase [Enterococcus faecium C68] gi|260075583|gb|EEW63889.1| alanine racemase [Enterococcus faecium C68] Length = 373 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAIETAEAAVAGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ Sbjct: 66 SNLDEGVELREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLE 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD ++Q Sbjct: 126 TPLSIHLKADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 186 KERFIEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I I+K AGE + YG + I IGYADG+P + G Sbjct: 246 PALELVSELIQIKKLPAGEGIGYGETYITSEAEWIGTIPIGYADGWPRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + D+A Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 352 LGTIHYEVACGLGQRIPREY 371 >gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] Length = 822 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 155/373 (41%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ +N + + + + +VK +AYG G +IA L + V V Sbjct: 461 TTLEVNLNAVVDNLNYYRSFMKPETKMVCMVKASAYGAGAVEIAKTLQDHQVDYLAVAVA 520 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR A I ++ +F+ +L P + S L + P Sbjct: 521 DEGVDLRKAGITANIMIMNPEMSS-FPTLFEYDLEPEVYSFRLLEALTHEAEKEGVTHFP 579 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + + + SH +D D ++ Q E Sbjct: 580 IHVKLDTGMHRLGFDPEKDMPLLVERLKRQSAVIPRSVFSHFVGSDSDDFDAFSARQYEL 639 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F + I + +S+GI P H ++ R G+ LYG + N+ V Sbjct: 640 FLKGSAQLQQAYSHKILRHICNSAGIEHFPERHLEMVRLGLGLYGINSRNNEIL--HNVS 697 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ I + + V Y + +LTRDS IA IGYADG L Sbjct: 698 TLKTTILQIHEVPKEDTVGYSRKGRLTRDSRIAALPIGYADGLDRKLG----------CG 747 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 + G P +G I MD+ M D+TD GD IFG D+ + ++ A GT Y+ Sbjct: 748 RAYCLVNGQRAPYVGNICMDVCMIDVTDI-DCREGDTAIIFGDDLPVTVLSDAVGTIPYE 806 Query: 357 LLVRIGTRYAKFY 369 +L + R + Y Sbjct: 807 ILTGVSARVKRVY 819 >gi|114766132|ref|ZP_01445136.1| alanine racemase [Pelagibaca bermudensis HTCC2601] gi|114541592|gb|EAU44634.1| alanine racemase [Roseovarius sp. HTCC2601] Length = 345 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 26/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +L IDL A++ NW ++ L+ AVVK +AYGLG +K+AP L +AG + FFV Sbjct: 4 AQLSIDLAAIRANWRALADLTTG-EAGAVVKADAYGLGVDKVAPVLADAGAKRFFVAIAS 62 Query: 67 EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR I V G G + + NL+P+I+S+ Q+ + + HP+ Sbjct: 63 EGVTLRRVLGEGPEICVFSGHMKGDAEALRAANLVPMINSIDQML---RHVEALPGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + + + L++SHLACAD+P +N++QL FR + Sbjct: 120 IQLDSGMNRLGMEPSEWAALREIALAQ---KPRLVMSHLACADEPEHGMNALQLRTFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 SL+++ GIL+GP+YHF+LTRPGI +YGG + + VV +I Sbjct: 177 TDDIDA-PRSLSATGGILMGPDYHFELTRPGIGIYGGLPFADAT----PVVELMLPVIQT 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ GE V YG + +A A GYADG L G + Sbjct: 232 REVTPGESVGYGNAWVARVPTKVATIAAGYADGIHRAL-----------AKKGYVWAGNT 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 ILG+++MD+ D+T + +++ G +D VA A GT Y++L +G RY Sbjct: 281 RCKILGRVSMDLITIDVTTLKEVPE--QVELLGQKQSVDTVADAIGTIGYEVLTSLGNRY 338 Query: 366 AKFYT 370 A+ YT Sbjct: 339 ARTYT 343 >gi|257063503|ref|YP_003143175.1| alanine racemase [Slackia heliotrinireducens DSM 20476] gi|256791156|gb|ACV21826.1| alanine racemase [Slackia heliotrinireducens DSM 20476] Length = 434 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 158/386 (40%), Gaps = 31/386 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++DL A++NN + + R AVVK + YG G ++A A AG V Sbjct: 58 QRWSWVEVDLGAIRNNVQVVKRIIPAGCRFMAVVKADGYGHGAVEVARASIAAGANQLAV 117 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVS 121 V E V+LR A I VL ++ +++P + S + + G+ Sbjct: 118 AGVYEAVELRKAGITAPILVLSEPPAESIPLLLAYDIMPSVYSAEFAIAYAEMADLHGMR 177 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 PY L V+TG NR+G+ E +DF + +H A AD + S+Q R Sbjct: 178 APYHLAVNTGMNRIGVRFDEVIDFCRQVEFHRALDRVGTFTHFATADCAETFDFSLQFRR 237 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQT 234 F +I + + A+S+ L P H + R GISLYG I ++ Sbjct: 238 FCEVIDGMRQVGLDPGIVHCANSAATLRYPQTHLDMVRFGISLYGYHPCIETRGHFDLRP 297 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI + E VSYG + I +GYADG+ LSG + Sbjct: 298 AMSLHARITAVNTPPMSEGVSYGLHYRSPGSVKICAVPVGYADGFSRGLSGRTAF----- 352 Query: 295 FLGGKGFIKGYMVPILGKITMDMTM--FDITDS-----LSIEVGDYIQIFGPD----IKL 343 G + +G I MD M D+ S L VGD + +FG I + Sbjct: 353 ------IYGGRLCKQVGNICMDQCMFEVDLRTSAMRSRLDPHVGDEVVLFGSKDGCTIYV 406 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +D+ T ++++ + R K Y Sbjct: 407 EDLCDVLNTIPHEIICAMSLRMPKVY 432 >gi|255536698|ref|YP_003097069.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacteriaceae bacterium 3519-10] gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] Length = 813 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 153/369 (41%), Gaps = 19/369 (5%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + +L + A+VK +YGLG +IA L + + V +E Sbjct: 453 LEVNLNAVLHNINVHKSLLKPKTKMMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAYADE 512 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTFYSKLMSCGVSHPYA 125 G LR I V+ + II I + +P Sbjct: 513 GADLRKNGISVPIMVMNPEQHSYDSIIEHHLEPEIYSFRVLDLFNQQLIRKGADKDYPIH 572 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++++TG NRLG E + + S+ + + Q+E+F+++ Sbjct: 573 IKLETGMNRLGFREDEIDELAARLAKMDVKVASVFSHLSTADSEEEHNYTMHQIEKFQSI 632 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +SSGI +Y F++ R GI + G T + ++ VV+ ++ Sbjct: 633 STRLAEKLKYEPIRHILNSSGIANYADYQFEMVRIGIGMVGITSNEQIKNQLRNVVSFKS 692 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I I + AG+ V Y + K T+ + IA +GYADG P + G Sbjct: 693 VISQISEINAGDSVGYDRKYKATKRTRIATIPVGYADGVPRMIGNGI----------GHV 742 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G + PI+G I MDM M ++ D S + GD + IF L + + T Y++L Sbjct: 743 SISGNLYPIVGNICMDMMMVEVGD-SSAKEGDEVIIFNSKPSLAEFSDYCKTIPYEVLTS 801 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 802 ISRRVKRVY 810 >gi|116511664|ref|YP_808880.1| alanine racemase [Lactococcus lactis subsp. cremoris SK11] gi|123125695|sp|Q030B4|ALR_LACLS RecName: Full=Alanine racemase gi|116107318|gb|ABJ72458.1| alanine racemase [Lactococcus lactis subsp. cremoris SK11] Length = 367 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 155/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + +DL A++NN NA VK +AYG G +++ A+ + V Sbjct: 1 MKTSPHRNTSAIVDLKAIRNNIEKFKKHINPNAEIWPAVKADAYGHGSVEVSKAVSDL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I VL GI P I N+ S+ L + + Sbjct: 60 GGFCVSNLDEAIELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VD+G R+G+ E + +K I +H A AD Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADETKFKN 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 Q RF +++ + +++ L + R GIS+YG + + Sbjct: 180 QQARFNKIMAGLSRQPKFIHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + + I+K AGE V YG + + ++ I IGYADG+ + G Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K + G I+G++ MD M + S + G + + G D I DVA Sbjct: 294 ------KVLVDGKFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKANEITTTDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366 >gi|254437149|ref|ZP_05050643.1| alanine racemase [Octadecabacter antarcticus 307] gi|198252595|gb|EDY76909.1| alanine racemase [Octadecabacter antarcticus 307] Length = 345 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 190/363 (52%), Gaps = 26/363 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL AL +NW S++A++ + T AVVK N YGLG K+ AL AGV+ FFV +EG Sbjct: 6 LSVDLDALSSNWRSLDAMT-DVETCAVVKANGYGLGVAKVGRALMKAGVKRFFVAVAQEG 64 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 V LR P I + G G +I D L P+I++V Q ++ + HP+ +Q Sbjct: 65 VTLRQALGPNVEICIFAGHMRGDTDMIADMMLTPIINTVGQ---LTRHLEALPEHPFGVQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL + E + ++ L++SHLACAD P +N QL++F + Sbjct: 122 IDTGMNRLGLEIDEWASVAEIALSQ---NCRLVMSHLACADTPDHPMNRQQLDQFHLMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ GILLGP YHF +TRPGI LYGG + + +I +R Sbjct: 179 G-INVPRSLAATGGILLGPEYHFDMTRPGIGLYGGAPFTDALPVAYLDL----PVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y R S IA + GYADG LS G + V Sbjct: 234 VNVGETVGYANAWTAQRQSKIATVSGGYADGLTRALS-----------AGANLWHGAQAV 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+++MD+ D+TD + G + I GPD +D +A +GT Y++L +G+RY + Sbjct: 283 PLVGRVSMDLITADVTDLPEL-PG-VLSILGPDQTVDQLAERAGTIGYEILTSLGSRYQR 340 Query: 368 FYT 370 Y+ Sbjct: 341 RYS 343 >gi|283471286|emb|CAQ50497.1| alanine racemase [Staphylococcus aureus subsp. aureus ST398] Length = 382 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 27/371 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ + L N AVVK NAYGLG K+A L G F V +++E ++ Sbjct: 13 VDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIE 72 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQV 128 LR++ A+I VL + + + S L K + +++ Sbjct: 73 LRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKL 132 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG+ + + + +H ACAD+ + + Q RF+ +++ Sbjct: 133 DTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADE-PGDMTTEQYHRFKDMVN 191 Query: 188 HYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHPMQTVVTAEARI 242 E +S L + F RPGISLYG ++ V A + Sbjct: 192 EAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AGE VSYG T + IA+ IGYADGY + G + Sbjct: 252 VQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGS------------FVNV 299 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G+ ++G++ MD T+ + D ++ GD + + ++ A T NY++L Sbjct: 300 IGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVAAEKQHTINYEVL 357 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 358 CNLSRRLPRIY 368 >gi|15672826|ref|NP_267000.1| alanine racemase [Lactococcus lactis subsp. lactis Il1403] gi|281491333|ref|YP_003353313.1| alanine racemase [Lactococcus lactis subsp. lactis KF147] gi|20137230|sp|Q9CH94|ALR_LACLA RecName: Full=Alanine racemase gi|12723770|gb|AAK04942.1|AE006318_5 alanine racemase [Lactococcus lactis subsp. lactis Il1403] gi|281375074|gb|ADA64592.1| Alanine racemase [Lactococcus lactis subsp. lactis KF147] Length = 367 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 155/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + +DL A++NN NA VK +AYG G +++ A+ + V Sbjct: 1 MKTSPHRNTSAIVDLKAIRNNIEKFKKHIHPNAEIWPAVKADAYGHGSVEVSKAVSDL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I VL GI P I N+ S+ L + + Sbjct: 60 GGFCVSNLDEAIELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VD+G R+G+ E + +K I +H A AD Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADDTKFKD 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 Q RF +++ + +++ L + R GIS+YG + + Sbjct: 180 QQARFNKIMAGLSRKPKFVHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + + I+K AGE V YG + + ++ I IGYADG+ + G Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K + G I+G++ MD M + S + G + + G D I DVA Sbjct: 294 ------KVLVNGEFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKTNEITTTDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366 >gi|157160693|ref|YP_001458011.1| alanine racemase [Escherichia coli HS] gi|170020442|ref|YP_001725396.1| alanine racemase [Escherichia coli ATCC 8739] gi|188493753|ref|ZP_03001023.1| alanine racemase 2, catabolic [Escherichia coli 53638] gi|194437125|ref|ZP_03069224.1| alanine racemase [Escherichia coli 101-1] gi|253773812|ref|YP_003036643.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161272|ref|YP_003044380.1| alanine racemase [Escherichia coli B str. REL606] gi|300928267|ref|ZP_07143804.1| alanine racemase [Escherichia coli MS 187-1] gi|301648159|ref|ZP_07247912.1| alanine racemase [Escherichia coli MS 146-1] gi|307137803|ref|ZP_07497159.1| alanine racemase [Escherichia coli H736] gi|312971372|ref|ZP_07785547.1| alanine racemase [Escherichia coli 1827-70] gi|331641716|ref|ZP_08342851.1| alanine racemase [Escherichia coli H736] gi|157066373|gb|ABV05628.1| alanine racemase [Escherichia coli HS] gi|169755370|gb|ACA78069.1| alanine racemase [Escherichia coli ATCC 8739] gi|188488952|gb|EDU64055.1| alanine racemase 2, catabolic [Escherichia coli 53638] gi|194424108|gb|EDX40096.1| alanine racemase [Escherichia coli 101-1] gi|242376970|emb|CAQ31692.1| alanine racemase 2, PLP-binding [Escherichia coli BL21(DE3)] gi|253324856|gb|ACT29458.1| alanine racemase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973173|gb|ACT38844.1| alanine racemase [Escherichia coli B str. REL606] gi|253977387|gb|ACT43057.1| alanine racemase [Escherichia coli BL21(DE3)] gi|300463736|gb|EFK27229.1| alanine racemase [Escherichia coli MS 187-1] gi|301073745|gb|EFK88551.1| alanine racemase [Escherichia coli MS 146-1] gi|310335969|gb|EFQ01169.1| alanine racemase [Escherichia coli 1827-70] gi|315615973|gb|EFU96599.1| alanine racemase [Escherichia coli 3431] gi|323962767|gb|EGB58345.1| alanine racemase [Escherichia coli H489] gi|323973413|gb|EGB68600.1| alanine racemase [Escherichia coli TA007] gi|331038514|gb|EGI10734.1| alanine racemase [Escherichia coli H736] Length = 356 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|296101876|ref|YP_003612022.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056335|gb|ADF61073.1| alanine racemase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 356 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 159/370 (42%), Gaps = 22/370 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M +L DL ALK+N + + +R +VVK NAYG G ++I AL F Sbjct: 1 MSRPVLAQL--DLQALKDNLQIVRRAAPGSRVWSVVKANAYGHGIDRIWSALSA--TDGF 56 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 + ++EE + LR + I +L G + + D + + Sbjct: 57 ALLNLEEAILLRERGWKGPILLLEGFFHADDLPLLDKYRLTTSVHSNWQIKAIQDAKLHA 116 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+V++G NRLG + K +++H A A+ P +++ Sbjct: 117 PLDIYLKVNSGMNRLGFQPERVHTVWQQLRALKNVGEMTLMAHFADAEKPDGIADAMVRI 176 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236 + SL++S+ L P H+ RPGI LYG + + ++ V+ Sbjct: 177 ---EQAAEGLDCPRSLSNSAATLWHPEAHYNWVRPGIVLYGASPSGQWQDIANSGLKPVM 233 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + II ++ AG+ V YG + + T + I + A GYADGYP Sbjct: 234 TLRSEIIGVQTLKAGDTVGYGSRYRATGEQRIGIVAGGYADGYPRIA-----------PS 282 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G ++ G +G ++MDM D+T +G ++++G ++K+DDVA A+GT Y+ Sbjct: 283 GTPVWVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGSPVELWGNEVKIDDVAAAAGTVGYE 342 Query: 357 LLVRIGTRYA 366 L+ + R Sbjct: 343 LMCALAPRVP 352 >gi|288573304|ref|ZP_06391661.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569045|gb|EFC90602.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 371 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 154/379 (40%), Gaps = 26/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+++ L L N+ S+ + +V+K +AYG G ++A L + G Q F V Sbjct: 4 RPSRMEVSLDNLAFNYRSIKNHVGPEVQLMSVIKADAYGHGVMEVARRLSSEGCQRFAVA 63 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 + +E LR + V+ + N+ ++ + SK G Sbjct: 64 TSDEAFALRDGGVGEALLVMGPTSYASAGELVRRNVSVALTDMDMARALSKAAESEGTPA 123 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VD+G R+G +E + + + +H A AD+ Q R+ Sbjct: 124 YVHLKVDSGMGRIGFLPEEVPAILDELISLPGVVVEGLFTHFATADERRLDYTESQYRRY 183 Query: 183 RTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 +++ KG+ + +S+G L P H RPG+ LYG + P++ T Sbjct: 184 LDVLAMLEDKGVRIPVRHVCNSAGTLNSPEKHLDACRPGVILYGMWPSGDCIRPIELKPT 243 Query: 238 AEAR--IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 E + I +IR V YG + D IAV IGYADG S Sbjct: 244 FEVKTSIAMIRNLPPRSGVGYGLRYMTRGDERIAVLPIGYADGLSRAFSMRI-------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS- 350 + +KG VP +G I MD TM D+T + VGD + I G I D++A A Sbjct: 296 ---QMLVKGTRVPQVGNICMDQTMIDVTGL-DVSVGDEVVIVGSQGDETITPDELAGARH 351 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 352 NTINYEIPIMFSKRVPRVY 370 >gi|323953960|gb|EGB49759.1| alanine racemase [Escherichia coli H263] Length = 356 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I A+ G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPRARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|15901532|ref|NP_346136.1| alanine racemase [Streptococcus pneumoniae TIGR4] gi|111657514|ref|ZP_01408257.1| hypothetical protein SpneT_02001280 [Streptococcus pneumoniae TIGR4] gi|116515765|ref|YP_816964.1| alanine racemase [Streptococcus pneumoniae D39] gi|221232432|ref|YP_002511585.1| alanine racemase [Streptococcus pneumoniae ATCC 700669] gi|225855126|ref|YP_002736638.1| alanine racemase [Streptococcus pneumoniae JJA] gi|225857311|ref|YP_002738822.1| alanine racemase [Streptococcus pneumoniae P1031] gi|298229862|ref|ZP_06963543.1| alanine racemase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255738|ref|ZP_06979324.1| alanine racemase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503442|ref|YP_003725382.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A] gi|303254308|ref|ZP_07340416.1| alanine racemase [Streptococcus pneumoniae BS455] gi|61218406|sp|P0A2W8|ALR_STRPN RecName: Full=Alanine racemase gi|61218407|sp|P0A2W9|ALR_STRR6 RecName: Full=Alanine racemase gi|122278190|sp|Q04J74|ALR_STRP2 RecName: Full=Alanine racemase gi|254802389|sp|B8ZMG1|ALR_STRPJ RecName: Full=Alanine racemase gi|254802391|sp|C1CFR7|ALR_STRZJ RecName: Full=Alanine racemase gi|254802392|sp|C1CM34|ALR_STRZP RecName: Full=Alanine racemase gi|5759209|gb|AAD51027.1|AF171873_1 alanine racemase [Streptococcus pneumoniae] gi|14973192|gb|AAK75776.1| alanine racemase [Streptococcus pneumoniae TIGR4] gi|116076341|gb|ABJ54061.1| alanine racemase [Streptococcus pneumoniae D39] gi|220674893|emb|CAR69468.1| alanine racemase [Streptococcus pneumoniae ATCC 700669] gi|225723137|gb|ACO18990.1| alanine racemase [Streptococcus pneumoniae JJA] gi|225725718|gb|ACO21570.1| alanine racemase [Streptococcus pneumoniae P1031] gi|298239037|gb|ADI70168.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A] gi|302598659|gb|EFL65697.1| alanine racemase [Streptococcus pneumoniae BS455] Length = 367 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] Length = 825 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 150/373 (40%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ +N + A+ N + ++K + YG G +IA L + V Sbjct: 464 TTLEVNLNAMIDNLNYYRAMMHPNTKLVCMIKADGYGAGAVEIAKTLQDHRADYLAVAVA 523 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EG LR + I ++ K +FD +L P + S L K P Sbjct: 524 DEGATLRRNGISSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGFP 582 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + N+ + SH AD D + + Q E Sbjct: 583 VHIKLDTGMHRLGFDPEKDVPRLIERLHNQNALIPKSVFSHFVGADADQFDNFSQRQFEC 642 Query: 182 FRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F + I + +S+GI P + R G+ LYG + N + Sbjct: 643 FDKGSKMLQAAFEHHILRHIDNSAGIEHFPQRQLDMCRLGLGLYGINPRNNAIINNVS-- 700 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T I+ + K AGE V Y + + DS+IA IGYADG L Sbjct: 701 TLRTTILQLHKVKAGETVGYSRRGTIEHDSVIAAIPIGYADGLNRRLGNR---------- 750 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + +G I MD+ M D+T GD ++IFG ++ + ++ A T Y+ Sbjct: 751 NGHCLVNNQRAEYVGNICMDVAMIDVTGI-DCNEGDSVEIFGDNLPVTVLSDALQTIPYE 809 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 810 VLTGISNRVNRVY 822 >gi|149006639|ref|ZP_01830338.1| alanine racemase [Streptococcus pneumoniae SP18-BS74] gi|225861522|ref|YP_002743031.1| alanine racemase [Streptococcus pneumoniae Taiwan19F-14] gi|307127910|ref|YP_003879941.1| alanine racemase [Streptococcus pneumoniae 670-6B] gi|254802393|sp|C1CSV9|ALR_STRZT RecName: Full=Alanine racemase gi|147761937|gb|EDK68900.1| alanine racemase [Streptococcus pneumoniae SP18-BS74] gi|225726792|gb|ACO22643.1| alanine racemase [Streptococcus pneumoniae Taiwan19F-14] gi|306484972|gb|ADM91841.1| alanine racemase [Streptococcus pneumoniae 670-6B] gi|327389883|gb|EGE88228.1| alanine racemase [Streptococcus pneumoniae GA04375] gi|332072868|gb|EGI83349.1| alanine racemase [Streptococcus pneumoniae GA17545] gi|332200256|gb|EGJ14329.1| alanine racemase [Streptococcus pneumoniae GA47368] Length = 367 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKVLIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|255007708|ref|ZP_05279834.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis 3_1_12] Length = 831 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + L + +VK +AYG G +IA L V +E Sbjct: 473 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 532 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + + L K + P Sbjct: 533 GSDLRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPIH 591 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG ++ N+ + SH +D Q+ER+ Sbjct: 592 VKLDTGMHRLGFEEKDIPQLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIERYEH 651 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + I + +++GI P F + R GI LYG + N + T + Sbjct: 652 MSTELQEAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSVINNVS--TLK 709 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L G Sbjct: 710 TTILQIRDVAEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGCGH----------GY 759 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD GD IFG ++ + ++ T Y++L Sbjct: 760 CLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAVIFGDELPITVLSDTLDTIPYEVLT 818 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 819 GISTRVKRVY 828 >gi|115358240|ref|YP_775378.1| alanine racemase [Burkholderia ambifaria AMMD] gi|115283528|gb|ABI89044.1| alanine racemase [Burkholderia ambifaria AMMD] Length = 373 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + A+++N + + +R AV+K NAYG G E+I P L + Sbjct: 3 RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDLLIAAKPRQPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ QLE+F Sbjct: 121 QLKMNSGMNRLGYRPYAFRAAWERAAAAPSIGKITLMMHFANADEGE---VDWQLEQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S ++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAAGHIADTPLMPAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGMMTRVVGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LARRVP 351 >gi|312863275|ref|ZP_07723513.1| alanine racemase [Streptococcus vestibularis F0396] gi|322516061|ref|ZP_08068998.1| alanine racemase [Streptococcus vestibularis ATCC 49124] gi|311100811|gb|EFQ59016.1| alanine racemase [Streptococcus vestibularis F0396] gi|322125476|gb|EFX96822.1| alanine racemase [Streptococcus vestibularis ATCC 49124] Length = 367 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K+DL+A+ N + + +T AVVK NAYG G ++A + V Sbjct: 1 MISSLHRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + F V++++E ++LR + I +L + P + + N+ ++S+ L K Sbjct: 60 EGFCVSNLDEALELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMAKKQGL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+G+ E D + I +H A AD+ Sbjct: 120 DLTGLTCHIKIDSGMGRIGVRNLEDADNLIAGLKDLGADVEGIFTHFATADEADDSKFKR 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L+++ + +S+ + F R G+ +YG ++ + + Sbjct: 180 QLAFFTDLVNNLVDRPRLVHASNSATSIWHAETVFNAVRLGVVIYGLNPSGSVLDLPYNI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E ++ ++ AG+ V YG T D +I IGYADG+ L G Sbjct: 240 RPALSLETALVHVKTLPAGKDVGYGATYTTTVDEVIGTIPIGYADGWTRDLQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + PI+G+++MD + + G + + G + I +VA Sbjct: 294 ------HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCLLSDRVPRSY 366 >gi|303229989|ref|ZP_07316763.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a] gi|302515355|gb|EFL57323.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a] Length = 370 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 166/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L ID + ++ N + +L + + AV+K N YG G + G + V Sbjct: 2 RPTYLTIDTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 EE V LR I++L P +++ DTN IP + L +K+ + + Sbjct: 62 IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALNKVADNHDMII 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 A+ VDTG +R+G+ ++A++F + + SH++ AD Q ++F Sbjct: 122 RVAVAVDTGMHRIGIKPEDAVEFIKRVESYPNLAVDGFFSHMSNADAADQSHAHGQAQKF 181 Query: 183 RTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 T++ + LA+S+G+L + F RPGI YG ++ ++ Sbjct: 182 HTMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + ++ ++ AGE + YG IA +GYADGYP +LS Sbjct: 242 VLSLHSEVVHVQHLEAGEGIGYGSTYITPEPMTIATIPVGYADGYPRSLSNR-------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I+G P++G+I MD M + D+++++ GD + + G I ++A + Sbjct: 294 ---GTVLIQGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ R + Y Sbjct: 351 STIPYEIFCGFSDRVPRQY 369 >gi|326803963|ref|YP_004321781.1| alanine racemase [Aerococcus urinae ACS-120-V-Col10a] gi|326650608|gb|AEA00791.1| alanine racemase [Aerococcus urinae ACS-120-V-Col10a] Length = 385 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 98/391 (25%), Positives = 155/391 (39%), Gaps = 39/391 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+ + + + +N+ A S A+T AV+K +AYG G IA AL AG + F V Sbjct: 6 HRPTRVVVSIPNIVDNYLLFKHAFSPKAKTYAVIKADAYGHGSIPIAKALTEAGAEGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--- 119 +E + LR QA I +L + ++ ISS+ L Sbjct: 66 AVTDEALALREAGIQAPILILGITEVEDAWLHAQHDISLTISSLAWLKAAYAQRPTDQEF 125 Query: 120 VSHPYALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HV 174 L+VD+G R+GL QE +D+ + A +D Sbjct: 126 PPLKLHLKVDSGMGRIGLRDSQAGQEIIDYISDHQEAFELDGIFTHYATADSDQVKDQDY 185 Query: 175 NSVQLERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---- 224 + Q +RF I K ++++ L P + R GI LYG + Sbjct: 186 VAKQSQRFEDFIQALDFSHLNKKPLIHRSNTALALWYPEKTMDIVRLGIGLYGESPAGPD 245 Query: 225 -KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + + ++ T E+ ++ ++K AGE +SYG D I IGYADG P + Sbjct: 246 FALPEDMALKPAFTLESELVYVKKLQAGESISYGATYTTESDQWIGTLPIGYADGLPRSS 305 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 SG + I GY PI+G++ MD M + L + + + G D Sbjct: 306 SGF------------EVLIAGYKCPIVGRVCMDQCMVALPKELPLHE--KVTLIGSDDQG 351 Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I D+AL + T Y++ I R + Y Sbjct: 352 NHISAWDLALYNHTIAYEITCGISERVPRTY 382 >gi|160947411|ref|ZP_02094578.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270] gi|158446545|gb|EDP23540.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270] Length = 393 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 25/373 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++L LKNN+ + A+ V+K NAYGLG +A L G F V + E ++ Sbjct: 10 VNLDKLKNNFLKIKEKCNGAKVGIVLKANAYGLGACTVAEFLQKQGADYFCVANFSEAME 69 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVD 129 LR + I +L + + + N+ + ++ + C +++D Sbjct: 70 LRKKKIKLPILILGYVPNALFEKLIKNNVDLTVYNIEMIRELNEISAKCRKKCKIHIKID 129 Query: 130 TGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-- 186 TG NRLG + + D+ ++ K + + SHL +D +Q+ERF + Sbjct: 130 TGMNRLGFLIDDKLKDYLKEIYSMKHIIVKGMFSHLCVSDIDDFSFTKLQVERFEKVKHI 189 Query: 187 --SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV----TAEA 240 I ++ G L +Y++ + R GI +YG + + + + Sbjct: 190 LEEENLKIPMLHIANDGGALLHDYYYDMVRVGIGIYGHYPSEYVKDNSKMKMDTVVSFVS 249 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I+ G+ V YG R +A +IGYADGYP LS G Sbjct: 250 TVSNIKYIHKGDTVGYGRTFCADRTIKVATISIGYADGYPYELSN-----------KGYV 298 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356 I ILGK+ MD TM DI+D +++GD ++G + + ++A + T YD Sbjct: 299 MINNKKAKILGKVCMDQTMIDISDIDDVKIGDTALLYGEYKDMKLDIFEIAKIANTNVYD 358 Query: 357 LLVRIGTRYAKFY 369 L+ RI R + Y Sbjct: 359 LICRINMRIPRVY 371 >gi|119963782|ref|YP_948596.1| alanine racemase [Arthrobacter aurescens TC1] gi|119950641|gb|ABM09552.1| alanine racemase [Arthrobacter aurescens TC1] Length = 417 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 151/380 (39%), Gaps = 31/380 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A+++N ++ A AVVK +AYG G ++A A +AG V + E Sbjct: 27 AVIDLDAVRHNVRQFVGIASPAAVMAVVKADAYGHGAVQVARAALDAGAAWLGVAHISEA 86 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR +A + + + IS + L+V Sbjct: 87 LALRAAGVEAPLLAWLHTRESNFQAAVAAGIDVGISGWELEAVVAAAREQERPARVHLKV 146 Query: 129 DTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G ++ + ++ L ++ + SHLA AD+P QL FR Sbjct: 147 DTGLGRNGCTIADWDQLLGQAMEYQDQGLLRVVGVFSHLAVADEPERPETDEQLAVFREA 206 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVT 237 ++ + +A++ L P+ HF L R G+ +YG + + +T Sbjct: 207 LAMAEDAGVDTEVRHIANTPAALSRPDSHFDLVRVGLGIYGLSPFDGATSAELGLHPAMT 266 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +K G+ VSYG + +S + + +GYADG P + G Sbjct: 267 VRTLLSNCKKVPEGQGVSYGLNYRTIEESTLGLVPLGYADGVPR------------IATG 314 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDS-LSIEV---GDYIQIFGP----DIKLDDVALA 349 G + G P++G+I MD + D+ G +FG DD A A Sbjct: 315 GPVRVNGINYPVVGRIAMDQMVIDLGPLSPEAAAGLKGAEAVMFGNGADGGPTADDWAAA 374 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 +GT NY+++ RI R + Y Sbjct: 375 AGTNNYEIVTRISPRVPRSY 394 >gi|313889680|ref|ZP_07823323.1| alanine racemase [Streptococcus pseudoporcinus SPIN 20026] gi|313121977|gb|EFR45073.1| alanine racemase [Streptococcus pseudoporcinus SPIN 20026] Length = 368 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 162/382 (42%), Gaps = 28/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +DL A++NN ++ +T AVVK +AYG G +++ A+ V Sbjct: 1 MISSIHRPTVATVDLEAIRNNIKAVQGHIPKGTKTYAVVKADAYGHGAVEVSKAIDKE-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I VL + + + + ++S L + Sbjct: 60 DAYCVSNLDEALELRQAGISKEILVLGVVLADALLLAIENQITVTVASQEWLDDAQAFLG 119 Query: 118 CGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++ ++VD+G R+G+ + + + I +H A AD+ + Sbjct: 120 EDLTNLHVHVKVDSGMGRIGVRSLAEANQLIAGLRQAKVAVDGIFTHFATADEADTTKFQ 179 Query: 177 VQLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHP 231 QL F L+S ++S+ L + F R GI++YG + +P Sbjct: 180 SQLNFFTDLVSRLTDKPDLVHASNSATSLWHSDTIFNAVRLGIAIYGLNPSGSDLKLPYP 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ +R++ +++ AG+ V YG T D I IGYADG+ L G Sbjct: 240 LKPSLSLRSRLVHVKEIQAGDTVGYGATYTATEDECIGTIPIGYADGWTRDLQGF----- 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + I G I+G+++MD + + +G + + G +I DVA Sbjct: 295 -------EVLIDGQFCQIIGRVSMDQMTVRLPKTYE--IGKLVTLIGTSGDQEITATDVA 345 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 EKKGTINYEVLCLLSDRIPRKY 367 >gi|167758273|ref|ZP_02430400.1| hypothetical protein CLOSCI_00611 [Clostridium scindens ATCC 35704] gi|167664170|gb|EDS08300.1| hypothetical protein CLOSCI_00611 [Clostridium scindens ATCC 35704] Length = 388 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 89/385 (23%), Positives = 161/385 (41%), Gaps = 27/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQ 58 M++ + ++DL A++ N M + + +V+K + YG G +IA L + Sbjct: 1 MNNYTRICARVDLDAIEYNMEMMKKNIKEGVQMISVIKTDGYGHGALQIARMLEGKEYLW 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 + V + +E V LR + I VL I P Q K + + + + + S Sbjct: 61 GYAVATPDEAVVLRKGGIKKPILVLGCIFPDQRKAMIENEIRMTVYTEEMAKEVSELAGS 120 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G +++DTG +RLG E++D + + + +H A AD+ Sbjct: 121 MGKQAYIHIKLDTGMSRLGFLIEDESVDKIESISRMPNLIMEGMYTHFAKADETDKTFTH 180 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q++ + + ++S+GI+ + L R GIS YG + Sbjct: 181 SQMDGYLWMKKALDERRVTFKFYHCSNSAGIIDVKEANLDLVRAGISTYGLYPSSEVKKE 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + P++ + + + ++ G VSYGG R + IA +GY DGYP +LS Sbjct: 241 NVPLKPAMELISHVAHVKWVKEGTPVSYGGTFITKRPTKIATIPVGYGDGYPRSLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G I G PILG++ MD M D T+ ++ D + + G + ++ Sbjct: 298 --------KGYVLIHGKKAPILGRVCMDQFMVDATEIDDVKYADKVTLVGCDGNEKLPVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++ SG NY+ + +G R + + Sbjct: 350 TLSDLSGRFNYEFVCDLGKRIPREF 374 >gi|314934146|ref|ZP_07841507.1| alanine racemase [Staphylococcus caprae C87] gi|313653051|gb|EFS16812.1| alanine racemase [Staphylococcus caprae C87] Length = 382 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 161/382 (42%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R L ++L A+ NN+ N L N +V+K N+YGLG K+A L G Sbjct: 2 SEKFYRSTYLNVNLDAILNNYQIFNQLHHNKTVISVIKANSYGLGSVKVAHHLMEHGASF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMS 117 F V +++E ++LR++ A+I VL I + + S L + Sbjct: 62 FAVATLDEAIELRMHGIDAKILVLGVIPTKDISKAIQHRVALTVPSKAWLKEAIRNIPEK 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++D+G RLG+ ++E D K + +H A AD+P +N Sbjct: 122 NEKKLWLHAKIDSGMGRLGMKDVEEYKDVVDIINKKDDLVFEGVFTHFASADEPGDSMN- 180 Query: 177 VQLERFRTLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231 Q E F+ +++ + +S+ LL R GISLYG N Sbjct: 181 EQYEFFKDIVNQVEKPNYIHSQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVRDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ I+ ++ GE VSYG ++ IA+ +GYADGY + Sbjct: 241 LRPSAQLVTEIVQVKSLKVGETVSYGRTFTADKEMKIAILPVGYADGYLRAMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347 G + G+ ++G++ MD T+ + D +++GD + + I ++ +A Sbjct: 294 -----GAYVNVNGHQCEVVGRVCMDQTIVSVPD--DVKMGDKVILMDNHIDSPQSVESLA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 347 EKQHTINYEVLCNLSKRLPRIY 368 >gi|146312008|ref|YP_001177082.1| alanine racemase [Enterobacter sp. 638] gi|145318884|gb|ABP61031.1| alanine racemase [Enterobacter sp. 638] Length = 356 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 159/367 (43%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++DL ALKNN + + +R +VVK N YG G E I AL F + Sbjct: 2 SRPILAQLDLQALKNNLQIVRRAAPGSRVWSVVKANGYGHGIESIWSALSA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G E + D + + Sbjct: 60 NLEEAILLRERGWKGPILLLEGFFHADELPLLDKYRLTTSVHSNWQIKALQNAKLHSPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + K +++H A A+ P N++ Sbjct: 120 IYLKMNSGMNRLGFQPERVNTVWQQLRAIKNVGEMTLMAHFADAEKPDGITNAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P H+Q RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLDCARSLSNSAATLWHPEAHYQWVRPGIVLYGASPSGQWQDIANSGLKPVMTLR 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II I+ AG+ V YG + + T + I + A GYADGYP G Sbjct: 237 SEIIGIQTLKAGDTVGYGSRYRSTGEQRIGIVAGGYADGYPRLA-----------PSGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +I G +G I+MDM D+T +G ++++G ++K+DDVA A+GT Y+LL Sbjct: 286 VWIDGVRTGTVGTISMDMMAIDLTPCPQAGIGSPVELWGNEVKVDDVASAAGTVGYELLT 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|262195116|ref|YP_003266325.1| alanine racemase [Haliangium ochraceum DSM 14365] gi|262078463|gb|ACY14432.1| alanine racemase [Haliangium ochraceum DSM 14365] Length = 397 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 110/384 (28%), Positives = 177/384 (46%), Gaps = 28/384 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDF 60 H+ R++IDL A+ N + A AVVK +AYG G +A +L G + F Sbjct: 3 HTVRPTRVEIDLDAIHANARVLRE-VSQAALYAVVKADAYGHGARVVARSLAEVGAAEGF 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+ VEEG +LR A I V+ G E I +L+ +SS + + + Sbjct: 62 AVSLVEEGCELRDAGIDAPILVMGPALRGGEDEIVGRDLMAALSSFDDIARLAAAAARRG 121 Query: 121 SH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVN 175 + P L+VDTG RLG++ + + ++ ++SHLACAD ++ Sbjct: 122 ARLPVHLKVDTGMGRLGIAPARVGEALDHIRAHGSLEVVGLMSHLACADGDDPADPGCMS 181 Query: 176 SVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q+ RF + + + LA+SS LL P L R G++LYG + + + Sbjct: 182 YEQIARFDEAAAVLRARGLRHVRQHLANSSATLLFPEARRDLVRCGLALYGNSQQPERVP 241 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V I +R+ AG VSYG + D+ +AV IGYADG P L+G+ Sbjct: 242 RLRQGVRLVTEIAQVREVAAGSSVSYGALWRAPHDARVAVIPIGYADGAPRRLTGV---- 297 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD----IKLDD 345 G+ I G P++G ++MDMTM D++ S+ GD + + G I + + Sbjct: 298 -------GEVLIAGRRCPMVGAVSMDMTMIDVSALGGSVGEGDEVVLLGEQGDDAISVHE 350 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A +G Y++ + R + Y Sbjct: 351 MASWTGLCEYEVTCGLSKRVPRVY 374 >gi|149011437|ref|ZP_01832684.1| alanine racemase [Streptococcus pneumoniae SP19-BS75] gi|225859452|ref|YP_002740962.1| alanine racemase [Streptococcus pneumoniae 70585] gi|303258631|ref|ZP_07344611.1| alanine racemase [Streptococcus pneumoniae SP-BS293] gi|303261794|ref|ZP_07347740.1| alanine racemase [Streptococcus pneumoniae SP14-BS292] gi|303263658|ref|ZP_07349580.1| alanine racemase [Streptococcus pneumoniae BS397] gi|303266834|ref|ZP_07352713.1| alanine racemase [Streptococcus pneumoniae BS457] gi|303269891|ref|ZP_07355633.1| alanine racemase [Streptococcus pneumoniae BS458] gi|254802388|sp|C1C8T6|ALR_STRP7 RecName: Full=Alanine racemase gi|147764427|gb|EDK71358.1| alanine racemase [Streptococcus pneumoniae SP19-BS75] gi|225720818|gb|ACO16672.1| alanine racemase [Streptococcus pneumoniae 70585] gi|301802398|emb|CBW35152.1| alanine racemase [Streptococcus pneumoniae INV200] gi|302636877|gb|EFL67366.1| alanine racemase [Streptococcus pneumoniae SP14-BS292] gi|302640132|gb|EFL70587.1| alanine racemase [Streptococcus pneumoniae SP-BS293] gi|302640569|gb|EFL70974.1| alanine racemase [Streptococcus pneumoniae BS458] gi|302643602|gb|EFL73870.1| alanine racemase [Streptococcus pneumoniae BS457] gi|302646696|gb|EFL76921.1| alanine racemase [Streptococcus pneumoniae BS397] Length = 367 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + K + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|307705415|ref|ZP_07642272.1| alanine racemase [Streptococcus mitis SK597] gi|307621014|gb|EFO00094.1| alanine racemase [Streptococcus mitis SK597] Length = 367 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 157/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPEGTLKFAVVKANAYGHGAVAVATAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSELEVVSLAKEYDITLTVAGLEWIQALLDKEADLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + ++ I +H A AD+ S +VQLERF Sbjct: 125 TVHLKIDSGMGRIGFREAREAEQAQDLLQQHGARVEGIFTHFATADEESDDYFNVQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +++++ K + ++S+ L F R G ++YG ++ + + + Sbjct: 185 KSILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGDALDLPYDLTPALF 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVSAGAYMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGGKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|161503072|ref|YP_001570184.1| alanine racemase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864419|gb|ABX21042.1| hypothetical protein SARI_01137 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 356 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 160/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ +DL +K N + + AR +VVK NAYG G E++ AL +G F + + Sbjct: 3 RPIQASLDLQVMKQNLSIVRRAAPEARVWSVVKANAYGHGIERVWNAL--SGTDGFAMLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G Q+ +DT + + Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLETYDTYRLTTCIHSNWQLKALQNARLNAPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V++G NRLG + A + I+SH A AD P +++ T Sbjct: 121 YVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTIMSHFAQADHPEGIGEAMRRIALAT 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 SLA+S+ L P H+ RPGI LYG + + ++ V+T + Sbjct: 181 EGIQC---PYSLANSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIANTGLKPVMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AGE V YGG ++ I + A GYADGYP G Sbjct: 238 EIIGVQTLRAGEKVGYGGCYSAHQEQRIGIVAAGYADGYPRHA-----------PTGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 287 LVDGIRTGTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVAAAAGTLGYELLCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|238757005|ref|ZP_04618193.1| Alanine racemase, catabolic [Yersinia aldovae ATCC 35236] gi|238704835|gb|EEP97364.1| Alanine racemase, catabolic [Yersinia aldovae ATCC 35236] Length = 358 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + K++L+AL +N + + G ++ +VVK NAYG G ++ P L F + Sbjct: 3 RPIAAKLNLSALNHNLNIVRQHVGTSKIWSVVKANAYGHGLARVWPGLAA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR Q I +L G + + D + + Sbjct: 61 LNEAVLLREQGWQGPILLLEGFFQPPDLALVDHYRLTTTVHSDWQLEAIRAARLDAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG ++A + + ++SH A AD+ Q R Sbjct: 121 YLKLNSGMNRLGFPSEQAEAVWQWANSLSNVAEVTLMSHFANADNHIGA--GEQFARI-Q 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 +S + A+S+ IL P H+ RPGI LYG + + + ++ V++ + Sbjct: 178 HVSEHISAARCFANSAAILRHPETHYDWVRPGIILYGASPSGDIADIAALGLRPVMSLHS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ G V YG + I V A GYADGYP G G Sbjct: 238 EIIALQTLSVGHSVGYGSHYCASEPHRIGVVACGYADGYPRLAPG-----------GTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G ++MDM D+T VG ++++G + +D+VA A+GT Y+L+ Sbjct: 287 RVDGVLTHTVGAVSMDMLTVDLTPCPQAGVGSKVEVWGEHLPIDNVAAAAGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAGRVP 352 >gi|332759341|gb|EGJ89649.1| alanine racemase [Shigella flexneri 2747-71] gi|332767413|gb|EGJ97607.1| alanine racemase [Shigella flexneri 2930-71] Length = 356 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTACDEQRIGIVAAGYADGYPRHA-----------PTGAP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|53803938|ref|YP_114173.1| alanine racemase [Methylococcus capsulatus str. Bath] gi|81823645|sp|Q607M5|ALR_METCA RecName: Full=Alanine racemase gi|53757699|gb|AAU91990.1| alanine racemase [Methylococcus capsulatus str. Bath] Length = 359 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 168/366 (45%), Gaps = 19/366 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +D+ A +N+ + A + +++ AV+K NAYG G + A F V VE Sbjct: 5 ARAVLDMAAFAHNFAWIRAAAPDSKIMAVIKANAYGHGLIR--AARALPAADAFAVARVE 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG+ LR RI VL G + + + + + + + V L Sbjct: 63 EGIVLRQAGIAQRIAVLQGYGDEEGMRLSARHGLEPVIHSGFQLDLLERLDTSVPMGVWL 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + D+G +RLGL+ +E ++ Q +++HLA AD +QL F + Sbjct: 123 KADSGMHRLGLADEEFARARLRLARMPQVRQPVPVMTHLANADATDDPTTEIQLRCFGRM 182 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARI 242 E S+ +S+G++ RPGI LYG + +S P V+T ++R+ Sbjct: 183 AGGRG--EFSIGNSAGLMAWAAARSAWVRPGILLYGVSPFPGRSGPEEGLMPVMTLQSRL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +++ G+ V YGG R + + +AAIGY DGYP G + Sbjct: 241 IAVKQLKTGDAVGYGGDFICRRPTRMGIAAIGYGDGYPRRA-----------ATGTPVLV 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 +G VP++G+++MDM D+TD S E+GD + ++G + ++++AL + T Y LL + Sbjct: 290 RGRRVPLIGRVSMDMISVDLTDCPSAEIGDTVTLWGQGLPVEEIALHADTIPYVLLCNVT 349 Query: 363 TRYAKF 368 R Sbjct: 350 QRVNMV 355 >gi|197103527|ref|YP_002128904.1| alanine racemase [Phenylobacterium zucineum HLK1] gi|196476947|gb|ACG76475.1| alanine racemase [Phenylobacterium zucineum HLK1] Length = 382 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 188/365 (51%), Gaps = 19/365 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL+A++ N+ ++ + AR AAVVK +AYGLG ++ AL G +DFFV + E ++ Sbjct: 16 IDLSAVRENFRALARHAAPARLAAVVKADAYGLGAGPVSEALAAEGCRDFFVAHLSEALE 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY-ALQV 128 L+ P AR++VL G+ G+E ++PV++S+ Q +S+L G + P LQ+ Sbjct: 76 LKPVLPEDARLYVLNGLAAGREPACAAAGVLPVLNSLDQAERWSRLAPDGGAAPPAVLQI 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLGL E ++ ++ L++SHLACAD+P N+ Q E F L + Sbjct: 136 DSGMSRLGLPEAEVRRLAGDADLLGRLRIDLLMSHLACADEPDHPANAAQAEAFDRLAAA 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 SLA+S G LLGP + QL R G+ L+GG + + VV A ++ +R Sbjct: 196 LPDWPRSLANSHGALLGPRFRHQLVRSGVFLFGGVRS--QVLSPRPVVRLTAPVVQVRDV 253 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 AG V YG + IA A+GYADG+ L G G +P Sbjct: 254 PAGAGVGYGFAHVTRAPARIATVALGYADGWSWNL-----------AEGWPALFDGQTLP 302 Query: 309 ILGKITMDMTMFDITDSLSI----EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + G+++MD D+T + + GD ++ G + D A A+GT Y++L R+G R Sbjct: 303 VAGRVSMDSITLDVTAFEAAGGRLQPGDEVEFLGAGRDIVDAAEAAGTIPYEILTRMGRR 362 Query: 365 YAKFY 369 + Y Sbjct: 363 LQRRY 367 >gi|319654677|ref|ZP_08008756.1| alanine racemase [Bacillus sp. 2_A_57_CT2] gi|317393593|gb|EFV74352.1| alanine racemase [Bacillus sp. 2_A_57_CT2] Length = 423 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 150/375 (40%), Gaps = 26/375 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +I+L + N SM + AVVK N YG G +A A AG V ++ Sbjct: 49 TWAEINLDHISYNVESMKKHAEEGTNVIAVVKANGYGHGDAAVAEAALEAGASSLAVATL 108 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR A I V+ P N+ + L+ + + G Sbjct: 109 DEAMALRNKKIAAPILVMGASRPEHAGEASAKNIALTVFQKEWLSQAYEYVEDGEVLNIH 168 Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ DTG RLG+ E K L + +H A AD + QL RF Sbjct: 169 LKFDTGMGRLGIRSRDELAGIESVIKKDKRFMLEGVFTHFATADSLENAYFEKQLSRFEE 228 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTA 238 + S + + + +S+ L P HF R GIS+YG + P++ + Sbjct: 229 MTSWLEILPKYIHTSNSAAGLRFPKAHFNAVRMGISMYGLAPSMEIKSDLPFPLKEAFSL 288 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 I+ ++K GE VSYG + D IA IGYADG+ L G Sbjct: 289 HTSIVHVKKLHKGEKVSYGATYEAQEDEWIATLPIGYADGWIRKLQGQ------------ 336 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + +G VPI+G++ MD M + + + G + + G I +D++A T N Sbjct: 337 EVLAEGLRVPIVGRVCMDQCMIKLPHEMPV--GTKVTLIGEQGEEKIPVDEIAEKLETIN 394 Query: 355 YDLLVRIGTRYAKFY 369 Y++ + +R + Y Sbjct: 395 YEVTCMVSSRVPRIY 409 >gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] Length = 826 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + + + ++K +AYG G +IA L + V V +E Sbjct: 467 LEVNLNAVVDNLNWYRSFMKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 GV LR + I ++ K +FD +L P + S L + P Sbjct: 527 GVTLRKNGITSNIMIMNPEMSS-FKTLFDYDLEPEVYSFRLLDALVKAAQKEGITGFPVH 585 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG Q + + ++ + SH +D D ++ Q F Sbjct: 586 IKLDTGMHRLGFDPQKDMDELIDRLKHQNAIIPRSVFSHFVGSDADSFDEFSAKQFALFD 645 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +SSGI P + R G+ LYG + NK + T Sbjct: 646 EGSKKLQAAFKHKIIRHIDNSSGIEHFPARQLDMCRLGLGLYGINPRTNKIINNVS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + + DS+IA IGYADG L Sbjct: 704 KTTILQLRHVPAGDTVGYSRKGSIDHDSVIAAIPIGYADGLNRHLGNRHC---------- 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 754 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDVLDTIPYEVL 812 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 813 TTISNRVKRVY 823 >gi|319946373|ref|ZP_08020611.1| alanine racemase [Streptococcus australis ATCC 700641] gi|319747526|gb|EFV99781.1| alanine racemase [Streptococcus australis ATCC 700641] Length = 375 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 151/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R +D+ A+ N + A T AVVK NAYG G + L V F V Sbjct: 6 HRPTRAYVDVEAIAYNVQQIQAHIPKETLTFAVVKANAYGHGVVPVVERLLPL-VDAFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E +++R + I +L I + ++S+ L + Sbjct: 65 SNLDEALEVRQVAGEKPILILGVAPVEHVAIAIKEGIRYTVASLEWLKALLAKKTDLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VD+G R+G E L ++ I +H A AD+ QL+RF Sbjct: 125 KVHIKVDSGMGRIGFRSAEDLQEAMILLRDHGAEVEGIFTHFATADEKDDRHFQNQLQRF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237 + L+ + +S+ L + F R G +YG ++ + ++ ++ Sbjct: 185 KCLLELLPFTPKIVHASNSATTLWHADTIFNAVRLGDVMYGLNPSGRELELPYDIRPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E ++ ++ G+ V YG + + + I IGYADG+ + G Sbjct: 245 LETELVHVKPLEVGQTVGYGATYQTSDEEWIGTIPIGYADGWTRDMQGF----------- 293 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G PI+G+++MD + + +G + + G D I + DVA GT Sbjct: 294 -HVLVDGQFCPIVGRVSMDQITIRLPKAYP--IGTKVVLIGVDGDLAITITDVADYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCVLSDRVPRVY 366 >gi|163746601|ref|ZP_02153959.1| alanine racemase [Oceanibulbus indolifex HEL-45] gi|161380486|gb|EDQ04897.1| alanine racemase [Oceanibulbus indolifex HEL-45] Length = 347 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 186/364 (51%), Gaps = 23/364 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A+ NNW +++ L+ A T AVVK ++YGLG E++A AL AG + FFV E Sbjct: 4 ATLTIDLQAIANNWRALDRLT-KAETGAVVKADSYGLGAERVANALAQAGARQFFVALAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG LR + I V G G + I D L P+I+S Q + + HP+ Sbjct: 63 EGAALRQALGDRPVINVFSGHMAGDAEAIRDAALTPMINSTEQ---LLRQLETLPGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + ++ L +LI+SHLAC+D P +N+ QL F + Sbjct: 120 VQLDSGMNRLGMEPAEWAALRDIAQSQPL---TLIMSHLACSDAPDHEMNAAQLRSFHDM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SL+++ GILLG +YHF +TRPGI LYGG + Q VVT + +I Sbjct: 177 TQG-IDVARSLSATGGILLGSDYHFDVTRPGIGLYGGRPFDDA----QPVVTLDVPVIQT 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG +A A GYADG L E G Sbjct: 232 RTVTPGETVGYGNSWTADTMVTLATVAAGYADGLKRALGNAVGEACFQH--------DGK 283 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +PI+G+++MD+ DI+ + +Q+ GP +DD+A +GT Y++L +G RY Sbjct: 284 TLPIVGRVSMDLITVDISALSDVP--QTLQLIGPGQGVDDLADWAGTIGYEILTSLGARY 341 Query: 366 AKFY 369 + Y Sbjct: 342 DRHY 345 >gi|33862083|ref|NP_893644.1| alanine racemase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634301|emb|CAE19986.1| putative Alanine racemase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 395 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 180/383 (46%), Gaps = 31/383 (8%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ A+++N + L N AVVK + YG + ++ G V Sbjct: 22 QRAWIEVSGKAIESNVRQLRSKLKNNCEFMAVVKADGYGHDAKVVSEKAIKGGASQLGVA 81 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 +++EG+KLR + A I VL ++ I F +L+P IS+ + + + S + Sbjct: 82 TLKEGIKLRSFGINAPILVLGNLYTKKDLLICFRNDLMPTISTFRECLICNNIGKSNNLK 141 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177 L+VDTG +RLG + + +N + + + I SHLACAD+ + Sbjct: 142 FSLHLKVDTGMSRLGFECDQFVQQFNNIKSLENIAVKGIYSHLACADEKNALNPKSSTQL 201 Query: 178 QLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSH 230 Q E+F+ I + + I+ LA+S+G++LG ++HF + R G+S+YG IN++ Sbjct: 202 QKEKFQELLKIIDIDNTQNIKIHLANSAGMVLGKDFHFDMVRVGLSMYGYDPSVNINENL 261 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + +A++ +R G VSYG + R + +AV +IGYADG LSG S Sbjct: 262 FLKPALFLKAKVTFVRTIEKGIGVSYGNKFVSDRKTKLAVLSIGYADGIIRNLSGKIS-- 319 Query: 291 SPSVFLGGKGFIKGYM-VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 I P +G ITMD M DITDS IEVG + + G + I D Sbjct: 320 ----------LIHNKRLYPQVGSITMDQMMVDITDSNDIEVGSTMLLLGSEGDKSISPID 369 Query: 346 VALASGTTNYDLLVRIGTRYAKF 368 A + +++L R + Sbjct: 370 WADKCNSIPWEILCSFKNRLPRV 392 >gi|291451858|ref|ZP_06591248.1| alanine racemase [Streptomyces albus J1074] gi|291354807|gb|EFE81709.1| alanine racemase [Streptomyces albus J1074] Length = 391 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 149/372 (40%), Gaps = 32/372 (8%) Query: 17 KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76 + N ++ A + A AVVK +AYG G + A A AG V + E ++LR Sbjct: 2 RANVRALRARTDGAAYMAVVKADAYGHGMVRCAEAALQAGATWVGVATPYEALELRAAGV 61 Query: 77 Q---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGF 132 AR+ G + + +L +S + L + G L+ DTG Sbjct: 62 TPERARVMCWLWTPGGPWREGIEADLDMSVSDLWALAEVTEAARATGRRARIQLKADTGL 121 Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLERFRTLISHY 189 R G + D + + L + SH ACAD+P + QL RF + Sbjct: 122 GRNGCQPADWADLVDRARAAEREGLVTVTGLWSHFACADEPGHPSIAAQLARFDEMSGRA 181 Query: 190 K-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 +A+S +L P F L RPGI++YG + H ++ V+T A Sbjct: 182 YAGGLRPEVRHMANSPAVLTLPEARFDLVRPGIAMYGLSPAPELGTPADHGLRPVMTLAA 241 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + L++ G VSYG + + + +GY DG P SG G Sbjct: 242 PLALVKHVPGGHGVSYGHHYVTAGPTTLGLVPLGYGDGVPRHASG-----------AGPV 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356 + G + G+I MD + D+ E G +FGP + +D A A+GT Y+ Sbjct: 291 LVDGKWRTVAGRIAMDQFVVDLGGETPPE-GTEAVLFGPGDRGEPGAEDWARAAGTIGYE 349 Query: 357 LLVRIGTRYAKF 368 ++ RIG R + Sbjct: 350 IVTRIGGRVPRV 361 >gi|149913818|ref|ZP_01902350.1| alanine racemase [Roseobacter sp. AzwK-3b] gi|149812102|gb|EDM71933.1| alanine racemase [Roseobacter sp. AzwK-3b] Length = 346 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 184/362 (50%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A++ NW +++AL G ++TAAVVK +AYGL ++AP L AG + FFV EEG Sbjct: 6 LTIDLDAIRANWRALDAL-GTSQTAAVVKADAYGLDAGRVAPVLAAAGARSFFVAVAEEG 64 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 LR P I V G G ++I LIP+++SV Q+ + H + +Q Sbjct: 65 AALRKVLGPDVAIHVFSGHMAGDAELIGGAGLIPMLNSVDQM---IRHAEALPGHAFGVQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +D+G NRLG+ E + ++ +L++SHLACAD+P +N QL+ FR + Sbjct: 122 LDSGMNRLGMEPSEWAAVRDVALSQ---SPTLVMSHLACADEPDHPMNLQQLQAFREMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 LA++ GIL+GP YHF LTRPGI LYGG + VVT + +I R Sbjct: 179 GVTA-PLCLANTGGILMGPEYHFDLTRPGIGLYGGRPFEGA----RPVVTLDIPVIQCRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 E V Y TR + IA GYADG + G Sbjct: 234 LTPRETVGYANSFTATRPTRIATIGAGYADGIIRAMGPRS-----------HVLADGVPC 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 PI G+I+MD+ DITD ++Q+ GP +DD+A +GT Y++L +G RY + Sbjct: 283 PIAGRISMDLIGVDITDLGHDPE--HLQLLGPTQTVDDLADNAGTIGYEILTSLGARYVR 340 Query: 368 FY 369 Y Sbjct: 341 RY 342 >gi|148989349|ref|ZP_01820717.1| alanine racemase [Streptococcus pneumoniae SP6-BS73] gi|168493602|ref|ZP_02717745.1| alanine racemase [Streptococcus pneumoniae CDC3059-06] gi|194398697|ref|YP_002038309.1| alanine racemase [Streptococcus pneumoniae G54] gi|226711062|sp|B5E745|ALR_STRP4 RecName: Full=Alanine racemase gi|147925099|gb|EDK76179.1| alanine racemase [Streptococcus pneumoniae SP6-BS73] gi|183576433|gb|EDT96961.1| alanine racemase [Streptococcus pneumoniae CDC3059-06] gi|194358364|gb|ACF56812.1| alanine racemase [Streptococcus pneumoniae G54] gi|332199723|gb|EGJ13798.1| alanine racemase [Streptococcus pneumoniae GA41317] Length = 367 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|195977514|ref|YP_002122758.1| alanine racemase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226711061|sp|B4U178|ALR_STREM RecName: Full=Alanine racemase gi|195974219|gb|ACG61745.1| alanine racemase Alr [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 366 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 160/381 (41%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++DL A++ N + +T AVVK NAYG G ++ A+ + V Sbjct: 1 MISSLHRPTVARVDLEAIQANIDKIQRHIPKKVKTYAVVKANAYGHGAVAVSKAVEDQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L I + ++ L ++S+ L K Sbjct: 60 DGYCVSNLDEALELRQAGIDKEILILGVILASELQLAIKHQLTITVASLEWLELAKKESV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + QL I +H A AD+ + Sbjct: 120 DFSQLHVHVKVDSGMGRIGVRSLAEANQLISILSDMGVQLDGIFTHFATADESDHAMFDK 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232 QL F+ L+ A + +S+ L F R GI +YG N P+ Sbjct: 180 QLTFFKQLVEQLDKRPALVHASNSATSLWHSETIFNAIRLGIVIYGLNPSGNSLSLPCPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+R++ +++ AG+ V YG + IGYADG+ + G Sbjct: 240 KEALSLESRLVHVKQIQAGDSVGYGASYVAAESEYVGTLPIGYADGWTRNMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K ++G I+G+++MD + + +G + + G I DVA Sbjct: 294 ------KVLVEGEFCDIIGRVSMDQLTIRLLQAYP--IGTKVTLIGQQGKQVITATDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 YRGTINYEVLCLLSDRIPREY 366 >gi|329890148|ref|ZP_08268491.1| alanine racemase [Brevundimonas diminuta ATCC 11568] gi|328845449|gb|EGF95013.1| alanine racemase [Brevundimonas diminuta ATCC 11568] Length = 361 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 184/362 (50%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL AL N+ ++ A+SG A VVK + YGLG + L G + FFV EG Sbjct: 23 LNVDLDALARNYRTLGAVSG-APVNPVVKADGYGLGAAAVTQRLMAEGARTFFVARAAEG 81 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 V+LR P+ I++L G H ++ +NL PVI+ QL + LQ Sbjct: 82 VRLREAIGPEPVIYILDGCHGDGAAMLKASNLRPVINHPTQLQTWQ----AAGGGACGLQ 137 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG +++A + L L+++HLACAD+PS+ +N Q + + ++ Sbjct: 138 IDTGMNRLGFRVEDAP--------EPFEGLQLVMTHLACADEPSNPMNRAQRDAYAAAVT 189 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 Y + S A+S G LGP++ F + RPGI LYGG + + V + A+ + +R Sbjct: 190 RYPSVTRSFANSGGCFLGPDFAFDVVRPGICLYGGGPEGRPHDRITPVASLIAQAVQVRD 249 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 AGE V Y + R +A GYADG + G+ FI G M Sbjct: 250 VPAGETVGYSQGYRAERPMRVATVGAGYADGVLRSYGPR-----------GQVFIAGEMR 298 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 PI+G+++MD+ D+T + GD ++IFG + +DD A A+GT +Y+LL I R + Sbjct: 299 PIIGRVSMDVLAVDVTGL-DVTAGDPVEIFGANRLVDDAAAAAGTISYELLTSITPRVPR 357 Query: 368 FY 369 Y Sbjct: 358 VY 359 >gi|167554127|ref|ZP_02347868.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321605|gb|EDZ09444.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 356 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 I R Sbjct: 346 AIAPRVP 352 >gi|33241130|ref|NP_876072.1| alanine racemase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81835791|sp|Q7V9Z2|ALR_PROMA RecName: Full=Alanine racemase gi|33238660|gb|AAQ00725.1| Alanine racemase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 386 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 109/382 (28%), Positives = 170/382 (44%), Gaps = 28/382 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++ A+K N ++ +L AVVK + YG G E +A A G + V Sbjct: 14 RQRAWVEVSPDAIKANTLAIRSLLDEQCLLMAVVKADGYGHGSETVAEAALAGGATNLGV 73 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-V 120 +++E ++LR I VL I+P +L+P +SS + +++ Sbjct: 74 ATLQEALELRKAGIVCPILVLGNLINPEDLDACIHWDLMPTLSSAREALLCNQIAESHDK 133 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD----DPSSHVNS 176 ++VDTG RLG L+ A + N K L I SHLA AD ++ S Sbjct: 134 EFCVHIKVDTGMTRLGCDLRLASELIQLVDNLKNLSLRGIYSHLALADVEANGQANSFTS 193 Query: 177 VQLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q E+F TL+S + LA+S+G L HF + R G++LYG + + + Sbjct: 194 KQKEKFETLLSSVMPRGKPLYRHLANSAGTLRDKGLHFDMVRVGLALYGYSPLKDLRNNF 253 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 +Q + A++ L+R + VSYG R S +AV IGYADG LSG S Sbjct: 254 SLQPALAVRAKVTLLRDVPSDTGVSYGHTFITQRPSRLAVVGIGYADGISRALSGKMS-- 311 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346 I G P +G ITMD + DIT+S I++G + + G I D Sbjct: 312 ---------VLIDGKFYPQVGSITMDQLVIDITESPQIQIGSVVTLLGVDGDSAITPYDW 362 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 + SG+ +++L R + Sbjct: 363 SEISGSIPWEILCSFKYRLPRV 384 >gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM 16973] gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM 16973] Length = 824 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L AL N + + + + ++K N YG G +IA L + V V Sbjct: 463 TTLEVNLNALVENLNYYRSFMKPETKLVCMIKANGYGTGAVEIAKTLQDHRVDYLAVAVA 522 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH--P 123 +EGV LR + I ++ K +FD L P + S L K P Sbjct: 523 DEGVTLRNNGITSSIMIMNPEMTA-FKTMFDYELEPEVYSFRLLDALIKAARKEGIAGYP 581 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG Q+ ++ + SH +D + + Q Sbjct: 582 VHIKLDTGMHRLGFDPQQDIEKLIDVFKHQNALIPRSVFSHFVGSDSNDFDDFSRHQFVL 641 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F I + +S+GI P + R GI LYG + N Sbjct: 642 FDEASRKIQSAFPHKILRHIDNSAGIEHFPERQLDMCRLGIGLYGVNPRSNAIIHNVC-- 699 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ +R A E + Y + + RDSLIA IGYADG L Sbjct: 700 TLKTTILQLRIVKAHETIGYSRRGTVERDSLIAAIPIGYADGLNRRLGNRH--------- 750 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + G +G I MD+ M D+T + GD ++IFG + + ++ A T Y+ Sbjct: 751 -GYCLVNGKKADYIGNICMDVAMIDVTGI-DCKEGDAVEIFGDRLPVTVLSDALSTIPYE 808 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 809 VLTGISNRVKRVY 821 >gi|296268597|ref|YP_003651229.1| alanine racemase [Thermobispora bispora DSM 43833] gi|296091384|gb|ADG87336.1| alanine racemase [Thermobispora bispora DSM 43833] Length = 381 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 152/377 (40%), Gaps = 27/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + ++DL A+++N + +G A AVVK + YG G +A AG V Sbjct: 12 AQARVDLAAVRHNVSLLAEHAGGAELMAVVKADGYGHGAVPVARTCVAAGAARIGTALVT 71 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125 E + LR A I + ++ ++ + + G + Sbjct: 72 EAIALRDAGITAPILAWIFTPGERPDEALRRDIELSAGALWAIDEIAAAARRTGRTAKVH 131 Query: 126 LQVDTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG +R G +L + + + +++ I SHLACAD P + VN QL F Sbjct: 132 LKVDTGMSRAGATLDDWPALLQHALAVQAEGSIEITGIWSHLACADTPENPVNERQLAVF 191 Query: 183 RTLISHYK------GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 + G+ +A+S+ L P + + RPGI++YG + ++ Sbjct: 192 DQALRIADKAGVSSGVIRHIANSAATLTLPAARYDMVRPGIAIYGLSPAPRHGDFGLRPA 251 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T AR+ +++ AG VSYG R + + + +GYADG S + Sbjct: 252 MTLVARLSSVKRVAAGAGVSYGHTYVAERATTLGIVPLGYADGIMRAGSNRLEVLAAGRR 311 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + MD D+ D E GD + +FGP + + A G Sbjct: 312 RRIAGR-----------VCMDQFAIDLGDDP-AEPGDEVILFGPGDHGEPTCQEWADQLG 359 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y+++ +IG R + Sbjct: 360 TITYEIVTKIGGRVPRI 376 >gi|154500483|ref|ZP_02038521.1| hypothetical protein BACCAP_04155 [Bacteroides capillosus ATCC 29799] gi|150270714|gb|EDM98010.1| hypothetical protein BACCAP_04155 [Bacteroides capillosus ATCC 29799] Length = 715 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 106/380 (27%), Positives = 153/380 (40%), Gaps = 30/380 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +ID +AL +N + L AVVK NAYG G A ++GV+ F V + Sbjct: 346 RAWAEIDRSALVHNISQLTGLLPSGCELMAVVKANAYGHGDVLTARVCMSSGVKAFAVAT 405 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EEG++LR + I +L P Q + + L + S S Sbjct: 406 LEEGIRLRQAGMKGEILILGWTPPEQAQQLTRWRLSQAVVSRTYAEELSHSAH---RVKV 462 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--VNSVQLERF 182 L VDTG +RLGLS + K+L L QL RF Sbjct: 463 HLAVDTGMHRLGLSWDDGDGLLAVCRLKQLRVTGLFTHLAFSESLEPDAVGHTREQLHRF 522 Query: 183 RT----LISHYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKINKSHPM---- 232 +IS G A A SS LL RPGI+LYG + ++ Sbjct: 523 YQAADLVISAGYGPVALHALSSYGLLNCPKQAGMAYARPGIALYGVLSRPDEQVGTLPDL 582 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ A+I I G+ Y G + + +A IGYADGYP +LS Sbjct: 583 RPVLSLRAKIARIHNLEPGDCAGYDGAFAPSASARVAAVTIGYADGYPRSLSNG------ 636 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 GK I+G P+ G I MD + D+T + D + + G D + ++VA Sbjct: 637 ----KGKVLIRGKFAPVAGLICMDQLLVDVTGIPEAQEDDTVTLIGRDGENILTAEEVAR 692 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 +GT +LL R+G R + Sbjct: 693 DAGTITNELLSRLGERVTRV 712 >gi|125624499|ref|YP_001032982.1| alanine racemase [Lactococcus lactis subsp. cremoris MG1363] gi|20137246|sp|Q9RLU5|ALR_LACLM RecName: Full=Alanine racemase gi|16974088|emb|CAB56755.2| alanine racemase [Lactococcus lactis subsp. cremoris MG1363] gi|124493307|emb|CAL98277.1| Alr protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071289|gb|ADJ60689.1| alanine racemase [Lactococcus lactis subsp. cremoris NZ9000] Length = 367 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 155/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + +DL A++NN NA VK +AYG G +++ A+ + V Sbjct: 1 MKTSPHRNTSAIVDLKAIRNNIEKFKKHINPNAEIWPAVKADAYGHGSIEVSKAVSDL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I VL GI P I N+ S+ L + + Sbjct: 60 GGFCVSNLDEAIELRNHLVTKPILVLSGIVPEDVDIAAALNISLTAPSLEWLKLVVQEEA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VD+G R+G+ E + +K I +H A AD Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADETKFKN 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 Q RF +++ + +++ L + R GIS+YG + + Sbjct: 180 QQARFNKIMAGLSRQPKFIHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + + I+K AGE V YG + + ++ I IGYADG+ + G Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K + G I+G++ MD M + S + G + + G D I DVA Sbjct: 294 ------KVLVDGKFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKANEITTTDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366 >gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 840 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + L + +VK +AYG G +IA L V +E Sbjct: 482 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 541 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + + L K + P Sbjct: 542 GSDLRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPIH 600 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG ++ N+ + SH +D Q+ER+ Sbjct: 601 VKLDTGMHRLGFEEKDIPQLIRRLKNQNAVIPRSVFSHFVGSDSPQFDAFTRQQIERYEH 660 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + I + +++GI P F + R GI LYG + N + T + Sbjct: 661 MSTELQEAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSVINNVS--TLK 718 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L G Sbjct: 719 TTILQIRDVAEEDTVGYSRKGHLVRPSRIAAIPIGYADGLNRHLGCGH----------GY 768 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD GD IFG ++ + ++ T Y++L Sbjct: 769 CLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAVIFGDELPITVLSDTLDTIPYEVLT 827 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 828 GISTRVKRVY 837 >gi|15903583|ref|NP_359133.1| alanine racemase [Streptococcus pneumoniae R6] gi|15459204|gb|AAL00344.1| Alanine racemase [Streptococcus pneumoniae R6] Length = 374 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 13 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 72 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 131 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + + I +H A AD+ S + QLERF Sbjct: 132 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 191 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 192 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 251 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 301 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 302 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 357 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 358 NYEVVCLLSDRIPREY 373 >gi|323138212|ref|ZP_08073284.1| alanine racemase [Methylocystis sp. ATCC 49242] gi|322396464|gb|EFX98993.1| alanine racemase [Methylocystis sp. ATCC 49242] Length = 382 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 194/364 (53%), Gaps = 12/364 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL+AL +NW +++ L G A AVVK + YG+G + AL AG + FFV +V EG Sbjct: 25 LTVDLSALVSNWRALSTLGGQAECGAVVKADGYGVGQIPVMRALLAAGCRTFFVATVVEG 84 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 R P+A I+VL G+ PG + L P I S + + + + G A+ Sbjct: 85 ETARALAPEATIYVLDGVAPGCALRLAAARLRPAIGSFAELEEWAAAGRTLGRKLEAAIH 144 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG NRLG S +A D K ++++SHL+ + P + VN+ Q+ F Sbjct: 145 FDTGMNRLGFSPADAADVA---ERAKAIAPTVVMSHLSTSQIPEAPVNARQIAAFEETRR 201 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 H+ G+ AS+A+SS + L HF+LTRPG +LYGG ++PM+ VV+ ARII +R Sbjct: 202 HFPGLAASMANSSAVFLPEKPHFELTRPGYALYGGNPTPGAANPMRAVVSLHARIIAMRD 261 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V Y G R S +A GYADG P S + G+ + G Sbjct: 262 LAPGDCVGYDGIWTAARPSRVATIGAGYADGLP------VSATAAPKKPAGEAIVGGVRC 315 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P +G+++MD + D+TD+ + + G ++++ G I ++++A + T Y++L R+G RY Sbjct: 316 PFIGRVSMDYIVLDVTDAPREAAQRGAWVELLGETIDVEELAGRARTIGYEVLTRLGRRY 375 Query: 366 AKFY 369 A+ Y Sbjct: 376 ARRY 379 >gi|221194906|ref|ZP_03567962.1| alanine racemase [Atopobium rimae ATCC 49626] gi|221184809|gb|EEE17200.1| alanine racemase [Atopobium rimae ATCC 49626] Length = 383 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 103/389 (26%), Positives = 164/389 (42%), Gaps = 33/389 (8%) Query: 3 SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 +N + +I+L AL+ N + L+ + A+VK +AYG G A AL + G F Sbjct: 5 NNRWAWAEINLGALRRNAKAFKAQLARGVKFMAIVKADAYGHGAAACAKALRSVGADQFG 64 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120 V +V+EG+ LR + I VL + +L+P + + + + G Sbjct: 65 VATVDEGIALRQSGIEDPILVLNQPPLESIDDLVTFDLMPSVYEIDFALGFGEASSAAGK 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 Y L +D+G R+G+ +EAL+ + + + +H A AD ++Q+ Sbjct: 125 VGKYHLAIDSGMTRIGVRREEALELRRAIDFHRGLECAGTFTHFATADLLDDWDFALQVN 184 Query: 181 RFRTLIS--HYKGIEASL---ASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233 RF +S H G+E L ++ G +L P+ F + R GI LYG N ++ Sbjct: 185 RFTEAVSVIHEAGLETGLVHADNTPGTILHPDVQFDMCRIGIGLYGLHPAENTIPRIALE 244 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSP 292 V++ R+ G+ V YG ++ R + +A IGYADG LS Sbjct: 245 PVMSVRGRVTRAIYPNVGDGVGYGLTWRVPRKNIQVATVPIGYADGLARCLSNRMD---- 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTM--FDIT------DSLSIEVGDYIQIFGPD---- 340 + G +G I MD M DI + GD + I G D Sbjct: 301 -------VLVDGMRARQVGNICMDQFMFAVDINRARSYRPGYEVIEGDMVTIMGADGDEY 353 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I D++A GT NY+++ G R K Y Sbjct: 354 ISADEIAKLRGTINYEVVCDFGMRLDKVY 382 >gi|295090179|emb|CBK76286.1| alanine racemase [Clostridium cf. saccharolyticum K10] Length = 710 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 163/382 (42%), Gaps = 31/382 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +++ L N +++ L + VK NAYG G IA AL G++ F V Sbjct: 341 QARAWIELSKQQLYQNVDALSQLLPPGCQLMPAVKANAYGHGAVLIAKALQEKGIRAFCV 400 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 SV EGV+LR I +L HP +++ L + P + +C Sbjct: 401 ASVTEGVELRKNGITGTILILGYTHPDSFPLLWKYRLTQTVVDYPYAQSLN---ACRKKV 457 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQL 179 L++DTG +RLG+ + ++ F + I +HL +D Q Sbjct: 458 QVHLKIDTGMHRLGIR-SDHIEEISRMFQMDNLLVDGIYTHLCVSDSMTAADREFTYQQA 516 Query: 180 ERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG----TDKINKSH 230 F TL+ L++S G++ P + R GI+LYG D+ N S Sbjct: 517 NAFYTLLEKLSERGISCPNIHLSASYGLIHYPEFPSNYARIGIALYGMLSSRQDEENCSI 576 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 P+ V++ +AR+ +R GE YG + + IAV +IGYADG P +LS Sbjct: 577 PLFPVLSVKARVSSVRDLYKGEGAGYGLRYVAKENRQIAVLSIGYADGIPRSLSNGH--- 633 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346 G+ I G PI+G I MD + D+TD ++ GD + G +I D+ Sbjct: 634 -------GRVLINGQFAPIIGNICMDQMLVDVTDIKEVKQGDIAVLIGKSGDLEITAYDL 686 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A + + ++L R+G R + Sbjct: 687 AEQTESITNEILSRLGARLERI 708 >gi|110641415|ref|YP_669145.1| alanine racemase [Escherichia coli 536] gi|191171055|ref|ZP_03032606.1| alanine racemase [Escherichia coli F11] gi|300996024|ref|ZP_07181358.1| alanine racemase [Escherichia coli MS 200-1] gi|110343007|gb|ABG69244.1| alanine racemase, catabolic [Escherichia coli 536] gi|190908787|gb|EDV68375.1| alanine racemase [Escherichia coli F11] gi|300304631|gb|EFJ59151.1| alanine racemase [Escherichia coli MS 200-1] gi|324015669|gb|EGB84888.1| alanine racemase [Escherichia coli MS 60-1] Length = 356 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|53712185|ref|YP_098177.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis YCH46] gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46] Length = 848 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + L + +VK +AYG G +IA L V +E Sbjct: 490 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 549 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + + L K + P Sbjct: 550 GSDLRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPIH 608 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG ++ N+ + SH +D Q+ER+ Sbjct: 609 VKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFDAFTRQQIERYEK 668 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG + N + T + Sbjct: 669 MSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSIINNVS--TLK 726 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L G Sbjct: 727 TTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLGCGH----------GY 776 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD GD IFG ++ + ++ A T Y++L Sbjct: 777 CLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDELPITALSDALETIPYEVLT 835 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 836 GISTRVKRVY 845 >gi|254475313|ref|ZP_05088699.1| alanine racemase [Ruegeria sp. R11] gi|214029556|gb|EEB70391.1| alanine racemase [Ruegeria sp. R11] Length = 345 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 185/365 (50%), Gaps = 25/365 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +L I+L AL NW +++AL+ N TAAVVK N YGL ++ AL AG ++FFV E Sbjct: 4 AKLTINLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGQALAKAGARNFFVAIAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I V G G K++ D L P+++S+ Q+ + + + H + Sbjct: 63 EGVALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESL---PGHAFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + L++SHLACAD+PS +N+ QL+ F L Sbjct: 120 VQLDSGMNRLGMEAAEWAAVRDIAL---GQGPVLVMSHLACADEPSHPMNAQQLQTFSEL 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SL+++ G+LLG NYHF L RPGI LYGG + V + +I I Sbjct: 177 TDG-LDVPRSLSATGGLLLGRNYHFDLCRPGIGLYGGQPFGDA----LPVAQLDLPVIQI 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG R S IA A GYADG L G F Sbjct: 232 RDLDVGETVGYGNAWSAQRPSRIATVAAGYADGLHRALGNG----------GISVFAGDT 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P+ G+++MD+ DITD ++ I +D +A A GT Y++L +G+RY Sbjct: 282 PCPVAGRVSMDLITVDITDLPD--SPSHLTILNEQQTVDMLADAGGTIGYEILTSLGSRY 339 Query: 366 AKFYT 370 A+ YT Sbjct: 340 ARSYT 344 >gi|259501954|ref|ZP_05744856.1| alanine racemase [Lactobacillus antri DSM 16041] gi|259170131|gb|EEW54626.1| alanine racemase [Lactobacillus antri DSM 16041] Length = 374 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 149/374 (39%), Gaps = 29/374 (7%) Query: 11 IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I+L AL N + A L +++ AVVK NAYG G +A A AG V ++E + Sbjct: 13 INLRALGENIQAQKAALPADSKILAVVKANAYGHGLVPVAQAALRAGATGMCVAILDEAL 72 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPYAL 126 ++R VL + + + + + S+ +++ + L Sbjct: 73 EIRDSGLDVITLVLGITPVEEANVAAEAGVSLTVGSLDWLTKYHQFARQFNWKKPLKIHL 132 Query: 127 QVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 VDTG R+G ++ E + + +H A AD Q ++ Sbjct: 133 AVDTGMGRIGFTNVAEFNQAVKILRRYPEFEFEGMFTHFATADSADHTYFDRQYALWQKF 192 Query: 186 ISHYKGIEA--SLASSSGILLGPNYHF-QLTRPGISLYGGTDK---INKSHPMQTVVTAE 239 I+ + +A+S+ L + R G+S+YG + + +Q V T Sbjct: 193 IASLDELPPYTHMANSATGLWHRDQITANTIRMGLSMYGYNPSGTDLPEDLHLQPVGTLR 252 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + I ++K AGE VSYG D +A IGYADGYP ++G K Sbjct: 253 SSISFVKKLAAGEAVSYGATYTAKHDEWLATVPIGYADGYPRCMTGF------------K 300 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 + G PI G++ MD M + ++ + + G I +++A + T NY Sbjct: 301 VLVDGQYCPIAGRVCMDQMMVRLPKYYPVD--TPVVLMGRSGALTITAEEMAEQAQTINY 358 Query: 356 DLLVRIGTRYAKFY 369 ++L R + Y Sbjct: 359 EILTNFNNRIHRTY 372 >gi|148997751|ref|ZP_01825315.1| alanine racemase [Streptococcus pneumoniae SP11-BS70] gi|168575112|ref|ZP_02721075.1| alanine racemase [Streptococcus pneumoniae MLV-016] gi|307068325|ref|YP_003877291.1| alanine racemase [Streptococcus pneumoniae AP200] gi|147756250|gb|EDK63292.1| alanine racemase [Streptococcus pneumoniae SP11-BS70] gi|183578867|gb|EDT99395.1| alanine racemase [Streptococcus pneumoniae MLV-016] gi|306409862|gb|ADM85289.1| Alanine racemase [Streptococcus pneumoniae AP200] Length = 367 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ I L A++ N M AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|169832829|ref|YP_001695074.1| alanine racemase [Streptococcus pneumoniae Hungary19A-6] gi|226711063|sp|B1I755|ALR_STRPI RecName: Full=Alanine racemase gi|168995331|gb|ACA35943.1| alanine racemase [Streptococcus pneumoniae Hungary19A-6] Length = 367 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKCLPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|238019929|ref|ZP_04600355.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748] gi|237863453|gb|EEP64743.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748] Length = 370 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L I+ + ++ N + +L + + AV+K N YG G + G + V Sbjct: 2 RPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 EE V LR I++L P +++ DTN IP + L K+ + + Sbjct: 62 IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALDKVAENHDMII 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 A+ VDTG +R+G+ ++A++F + + ++ SH++ AD Q ++F Sbjct: 122 RVAVAVDTGMHRIGIKPEDAVEFIKRVESYENLEVDGFFSHMSNADAADQSHAHGQAQKF 181 Query: 183 RTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 ++ + LA+S+G+L + F RPGI YG ++ ++ Sbjct: 182 HKMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + ++ ++ AGE + YG IA +GYADGYP +LS Sbjct: 242 VLSFHSEVVHVQHLEAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR-------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I G P++G+I MD M + D+++++ GD + + G I ++A + Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVAVPDTITVQPGDKVVLLGSQGHESISALEIAALA 350 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ R + Y Sbjct: 351 STIPYEIFCGFSERVPRQY 369 >gi|149001990|ref|ZP_01826944.1| alanine racemase [Streptococcus pneumoniae SP14-BS69] gi|237649236|ref|ZP_04523488.1| alanine racemase [Streptococcus pneumoniae CCRI 1974] gi|237821996|ref|ZP_04597841.1| alanine racemase [Streptococcus pneumoniae CCRI 1974M2] gi|147759799|gb|EDK66789.1| alanine racemase [Streptococcus pneumoniae SP14-BS69] gi|332074034|gb|EGI84512.1| alanine racemase [Streptococcus pneumoniae GA41301] Length = 367 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ I L A++ N M AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|160941522|ref|ZP_02088855.1| hypothetical protein CLOBOL_06421 [Clostridium bolteae ATCC BAA-613] gi|158435548|gb|EDP13315.1| hypothetical protein CLOBOL_06421 [Clostridium bolteae ATCC BAA-613] Length = 394 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 161/373 (43%), Gaps = 26/373 (6%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++DL + N + A++ + AAVVK + YG G IAPA+ G V ++ E Sbjct: 18 VEVDLDRIAFNVRQIKAMAGPGTQVAAVVKADGYGHGALGIAPAIMENGASLLAVATLSE 77 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126 V+L+ P + ++ + + +I I ++ Q ++L S + Sbjct: 78 AVELKQAYPGYPVLIMGLTPDRLLPYVLEYGIIQTIDTLAQARLLNRLASEKKQQAVIHI 137 Query: 127 QVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + DTGF+R+G E+LD + + I SHLA DD S N VQ F Sbjct: 138 KYDTGFHRIGFPDCPESLDEIRQICSMPWLKPEGIYSHLALKDDQS---NQVQFRCFMDA 194 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 ++ +A S + P Y + R G +YG ++ +T + Sbjct: 195 VNELESEGCHFRYKHIADSIAAVDFPEYRLDMIRAGAIVYGLKGFHKGQLDIRQALTFKT 254 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI I L G+ VSY +D+ +A GYADGYP L G Sbjct: 255 RISHITPVLKGQGVSYDYLWTAPQDTRVAALPFGYADGYPRNLRG-----------KAMV 303 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 ++G VP++G I MD M D+TD ++GD + I+G + +D V+ +GT + Sbjct: 304 TLRGKQVPVIGVICMDQCMIDLTDVPEAQIGDQVIIYGDGSGNTLDIDAVSRLAGTNKNE 363 Query: 357 LLVRIGTRYAKFY 369 ++ R+ R + Y Sbjct: 364 IVARLTRRPPRIY 376 >gi|51104395|gb|AAT96856.1| DadX [Rhizobium etli] Length = 377 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 192/365 (52%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ G + FFV E Sbjct: 23 LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEA 82 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V+LR A+IFVL G+ PG E ++ +IPV++S+ Q +S S P L Sbjct: 83 VRLRPALAEDAQIFVLNGLQPGNEVACAESGIIPVLNSLAQWRQWSATARLLTRSLPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG +E + + ++ I+SHLACAD+ S N QL + Sbjct: 143 QFDTGMSRLGFPWEERAELAAVIGDGANVEILFIMSHLACADELDSGQNGDQLAEMARIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G + S A+S G+ LG YH L RPGI+LYGG ++PM+ VV + ++ R Sbjct: 203 DEFPGFDISFANSGGLFLGDAYHGVLARPGIALYGGAPNAGGTNPMEPVVRLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 +G + YGG R++ +A A GYADG P +L G + KG Sbjct: 263 TVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD DIT E ++ GP+ L+DVA A+GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSATVDITALPEGGAEAWKPCRMLGPNQTLEDVAGAAGTISYEILTGLGDR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YDRQY 376 >gi|332523529|ref|ZP_08399781.1| alanine racemase [Streptococcus porcinus str. Jelinkova 176] gi|332314793|gb|EGJ27778.1| alanine racemase [Streptococcus porcinus str. Jelinkova 176] Length = 368 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 28/382 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +DL ++NN ++ + + AVVK NAYG G +++ A+ V Sbjct: 1 MISSIHRPTVATVDLKVIQNNIKAVQGHIPKDTKIYAVVKANAYGHGAVEVSKAIDKE-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLM 116 + V++++E ++LR I VL + + + I V S + L Sbjct: 60 DAYCVSNLDEALELRQAGISKEILVLGVVLADDLLLAIENQITITVASQEWLDDAQAFLG 119 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + ++VD+G R+G+ D + + I +H A AD+ + Sbjct: 120 GDLTNLHVHVKVDSGMGRIGVRSLAEADQLIAHLRQAKVIVDGIFTHFATADEADTRKFE 179 Query: 177 VQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHP 231 QL F L++H A + +S+ L + F R GI++YG +N +P Sbjct: 180 TQLNFFTDLVNHLTYKPALVHASNSATSLWHSDTIFNAVRLGIAIYGSNPSGSELNLPYP 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ +R++ +++ AG+ V YG T + IGYADG+ L G Sbjct: 240 LKPALSLRSRLVHVKEIHAGDTVGYGATYTATETEFVGTIPIGYADGWTRDLQGF----- 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + I G I+G+++MD + +G + + G +I D+A Sbjct: 295 -------EVLIDGQFCQIIGRVSMDQITVRLPKVYE--IGKLVTLIGTSGDQEITATDLA 345 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 EKKGTINYEVLCLLSDRIPREY 367 >gi|294084215|ref|YP_003550973.1| alanine racemase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663788|gb|ADE38889.1| alanine racemase [Candidatus Puniceispirillum marinum IMCC1322] Length = 383 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 190/377 (50%), Gaps = 27/377 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R+ IDL A+ +NW +++LS + AA+VK N YGLG + ALY AG + FFV +++ Sbjct: 18 RIDIDLGAIAHNWLYLDSLSPKSTITAAMVKANGYGLGANHVGAALYKAGCRQFFVANLD 77 Query: 67 EGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 E V R Y A+I VL+G H GQE + L PV++ + Q++ + Sbjct: 78 EAVSFRTYLDNISISDAQIMVLHGCHRGQEHDMRAYRLTPVLNDLEQVSRWRLYAQNANE 137 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++P L +DTG RLG + N +++ I+SHL + N+ Q Sbjct: 138 TYPAMLHLDTGMTRLGFDPDQTDWLIENKQALNGLEITYIMSHLISGEISDDPANTAQKT 197 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQTV 235 RF S + GI+ASLA+S G+ LG +H+Q+TRPGI++YG S+ +++ Sbjct: 198 RFDEYRSFFGGIKASLANSGGVFLGNEFHYQMTRPGIAIYGVHPCGKDQAITDSNGLKSC 257 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T RII +R A G V YGG +L+R S IA +GYADGY LS Sbjct: 258 ITWHGRIIQVRTAPEGATVGYGGTHRLSRPSRIATVGVGYADGYQRNLSN---------- 307 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASGT 352 I G+ P++G+I+MD D+TD ++ + + ++D+A + T Sbjct: 308 -KAFVNILGHRAPVIGRISMDSITIDVTDIPPNIMLKA-ETAALLSDLYSIEDMANDAST 365 Query: 353 TNYDLLVRIGTRYAKFY 369 Y++L I R + Y Sbjct: 366 IPYEILTGISRRAIRRY 382 >gi|167750416|ref|ZP_02422543.1| hypothetical protein EUBSIR_01390 [Eubacterium siraeum DSM 15702] gi|167656567|gb|EDS00697.1| hypothetical protein EUBSIR_01390 [Eubacterium siraeum DSM 15702] Length = 379 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 18/370 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL++N++ + L+ AVVK NAYG + + L GV+ + V++ Sbjct: 6 KRAWAEIDLDALEHNYNEIKKLAKGKDILAVVKANAYGHDDKAVCLKLQELGVKYYGVSN 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + EG KLR + I + + + SV S S GV P Sbjct: 66 LWEGEKLRCHGITGTILTFGYTDEDYFDELLEYGITQTAGSVQYAKQLSDYAVSKGVKLP 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V+TG R+G+ Q+ + + D Q E+ Sbjct: 126 VHIKVNTGMTRVGIDSQQEMLDILAMPGLDCKAAYTHFAAADSLDPSDVEYTDRQQEKLM 185 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--VTAEAR 241 I+ KG+ +S GI+ ++ + R G+ LYG P +T ++ Sbjct: 186 K-IAKDKGLLIHSQNSGGIIYHGDFGGDIVRAGVILYGHYPNYPLEVPFDMKSVMTVKSV 244 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + ++ AG +SYG ++ +AV IGYADGY S GK Sbjct: 245 VSQLKTIPAGTQISYGRTYTAEKEMTVAVIPIGYADGYFRDFS-----------SKGKML 293 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLL 358 I G + ++G++ MD T+ D+++ I+ GD + ++ + +D A T Y+L Sbjct: 294 INGVLCNVVGRVCMDQTIVDVSNVPDIKTGDIVYVYSDKCRETSVDYNASLIDTIGYELT 353 Query: 359 VRIGTRYAKF 368 + R + Sbjct: 354 CAVALRIPRV 363 >gi|153006329|ref|YP_001380654.1| alanine racemase [Anaeromyxobacter sp. Fw109-5] gi|152029902|gb|ABS27670.1| alanine racemase [Anaeromyxobacter sp. Fw109-5] Length = 393 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 158/373 (42%), Gaps = 19/373 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL +N + A + ++ AVVK NAYG G + A AG V Sbjct: 11 RPVWAEIDLDALAHNVRLLAARAAPSKLYAVVKANAYGHGAIAVGRAALAAGASALAVVC 70 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 V+E +LR A I V+ P + +L P ++S + GV Sbjct: 71 VDEAEELRRGGVDAPILVIGYTPPADAARVVALDLRPTVASADVAEALAVAAKRRGVPVA 130 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NR GL+ + ++ + +H A A++ Q + R Sbjct: 131 VHLELETGLNRHGLTPDALVALATRLRAMPELRVEGLFTHFAAAEEGDQRFTRRQFDVLR 190 Query: 184 TLISHYKGI-EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEA 240 + + I E A+S+ +LL ++ R G+S+YG ++ V++ A Sbjct: 191 DVSARLSWIPERHCAASASLLLDHEMALEVVRAGLSMYGYRPAPWCGTDADLRPVLSLRA 250 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+ + + G V YG R S +A+ GYADGY +L Sbjct: 251 RVARVLEVERGATVGYGRTWAAARPSRVALVMCGYADGYRRSLGNR-----------AHL 299 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 ++G P++G++ MDM M D+T + GD + G D + D++A + T +++ Sbjct: 300 LVRGRRAPVVGRVAMDMCMVDVTAVPEVRAGDVATLLGRDGEERVDADELASLADTISWE 359 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 360 ILAGITARVPRLY 372 >gi|322375697|ref|ZP_08050209.1| alanine racemase [Streptococcus sp. C300] gi|321279405|gb|EFX56446.1| alanine racemase [Streptococcus sp. C300] Length = 367 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIYLGAIRQNIQQMGAHIPEGTLKWAVVKANAYGHGAVAVAMAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + + ++ ++ V + + S Sbjct: 65 SNIDEAIELRQAGLSKKILILGVSEIEAIALAKEYDITLTVAGVEWIQALLARETDLSSL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + ++ I +H A AD+ S + QLE F Sbjct: 125 TVHLKIDSGMGRIGFREASEAEQAQTMLQQHGARVEGIFTHFATADEESDAYFNAQLECF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + +++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKIYPL--GTKVTLIGTNGGKEITATQVATYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|237731822|ref|ZP_04562303.1| alanine racemase [Citrobacter sp. 30_2] gi|226907361|gb|EEH93279.1| alanine racemase [Citrobacter sp. 30_2] Length = 356 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL ALK N + +AR +VVK NAYG G E++ AL F + + Sbjct: 3 RPILASIDLQALKQNLTITRQAAPDARVWSVVKANAYGHGIERVWNAL--GTTDGFAMLN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G ++ ++D + + Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAEDLTVYDNYRLTTCVHSNWQLKALQNARLKAPLDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + ++SH A A+ P ++ Sbjct: 121 YLKVNSGMNRLGFLPERVPTVWQQLRAMPNVGEMTLMSHFADAEHPEGIQEAMARI---A 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + SL++S+ L P H+ RPGI LYG + + ++ V+T + Sbjct: 178 QATEELECRRSLSNSAATLWHPEAHYDWVRPGIILYGASPSGQWRDIANTGLKPVMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I+ AG+ V YGG+ + + I + A GYADGYP G Sbjct: 238 EIIGIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYPRHA-----------PSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 287 LVDGVRTGTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVATAAGTVGYELMCS 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LALRVP 352 >gi|261856961|ref|YP_003264244.1| alanine racemase [Halothiobacillus neapolitanus c2] gi|261837430|gb|ACX97197.1| alanine racemase [Halothiobacillus neapolitanus c2] Length = 367 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 20/372 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L I L A ++N+ A G R AVVK +AYG G + A A+ + F V Sbjct: 2 SRPLVAHIRLDAFRHNYRLAKAAHGG-RALAVVKADAYGHGAVECARAIADE-ADGFAVA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE + LR A I +L G E + + + ++ Sbjct: 60 MIEEALSLRAAGITAPILLLEGFFDVSELLDIQIHNLWIVVHHRWQVDALLAAHLTRPIT 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++D+G +R+G++ + N +++SH A AD+P S QLE F Sbjct: 120 VWLKMDSGMHRVGIAPDQYRATYERLKNHPSIAQIVLMSHFARADEPESGHMLQQLETFH 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQTVVTA 238 SL++S+ +L RPGI LYG + K+ ++ V+ Sbjct: 180 AATMGIDA-PVSLSNSAAVLGWSGARADWARPGIMLYGADPFVGKAGASIAEQLRPVMRL 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 E II +R GE + YGG R + + V + GYADGYP + G Sbjct: 239 EGGIISVRIIARGEPLGYGGAFVADRPTRVGVVSCGYADGYPR-----------TAPTGT 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G + ++G+++MDM D+T ++G ++++G + ++ VA GT Y+LL Sbjct: 288 PVAVDGQLTRLIGRVSMDMLTVDLTHLPQADIGSRVELWGDQVPVNAVASRVGTIAYELL 347 Query: 359 VRIGTRYAKFYT 370 + R Y+ Sbjct: 348 CHV-KRARFEYS 358 >gi|182684640|ref|YP_001836387.1| alanine racemase [Streptococcus pneumoniae CGSP14] gi|182629974|gb|ACB90922.1| alanine racemase [Streptococcus pneumoniae CGSP14] Length = 374 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 13 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 72 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 131 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + K + I +H A AD+ S + QLERF Sbjct: 132 TVHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERF 191 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 192 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 251 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 301 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 302 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 357 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 358 NYEVVCLLSDRIPREY 373 >gi|60680368|ref|YP_210512.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis NCTC 9343] gi|60491802|emb|CAH06560.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis NCTC 9343] gi|301161901|emb|CBW21445.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis 638R] Length = 840 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + L + +VK +AYG G +IA L V +E Sbjct: 482 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 541 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + + L K + P Sbjct: 542 GSDLRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPIH 600 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG ++ N+ + SH +D Q+ER+ Sbjct: 601 VKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFDAFTRQQIERYEK 660 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG + N + T + Sbjct: 661 MSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSIINNVS--TLK 718 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L G Sbjct: 719 TTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLGCGH----------GY 768 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD GD IFG ++ + ++ A T Y++L Sbjct: 769 CLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDELPITVLSDALETIPYEVLT 827 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 828 GISTRVKRVY 837 >gi|270292352|ref|ZP_06198563.1| alanine racemase [Streptococcus sp. M143] gi|270278331|gb|EFA24177.1| alanine racemase [Streptococcus sp. M143] Length = 374 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M AVVK NAYG G +A V F V Sbjct: 13 HRPTKALIYLGAIRQNIQQMGDHIPKGTLKWAVVKANAYGHGAVAVA-TAIQEDVDGFCV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR +I +L + + ++ ++ V + + Sbjct: 72 SNIDEAIELRQAGLSKKILILGVSEIDAIALAKEYDITLTVAGVEWIQALLDKEADLTGL 131 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + ++ I +H A AD+ S + QLERF Sbjct: 132 TVHLKIDSGMGRIGFREAGEAEQAQALLQQHGARVEGIFTHFATADEESDAYFNTQLERF 191 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + +++ K + ++S+ L F R G S+YG +N + + +T Sbjct: 192 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDSMYGLNPSGEVLNLPYDLTPALT 251 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFT---------- 301 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 302 --VLVDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGSNEDKEITATQVATYRGTI 357 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 358 NYEVVCLLSDRIPREY 373 >gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5] gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16] gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5] gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16] Length = 848 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + L + +VK +AYG G +IA L V +E Sbjct: 490 LEVNLGAMVANLNHYRSMLKPETKMVCMVKASAYGAGSYEIAKTLQEHHADYLAVAVADE 549 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR A I ++ K +FD L P + + L K + P Sbjct: 550 GSDLRKAGITASIIIMDPELTA-FKTMFDYKLEPEVYNFHLLDALIKAAEKEGITNFPIH 608 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRT 184 +++DTG +RLG ++ N+ + SH +D Q+ER+ Sbjct: 609 VKLDTGMHRLGFEEKDIPQLIRRLKNQNALIPRSVFSHFVGSDSAQFDAFTRQQIERYEK 668 Query: 185 LISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I + +++GI P F + R GI LYG + N + T + Sbjct: 669 MSKELQDAFPHKILRHICNTAGIERFPGAQFDMVRLGIGLYGISPIDNSIINNVS--TLK 726 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ IR + V Y + L R S IA IGYADG L G Sbjct: 727 TTILQIRDVAEEDTVGYSRKGHLIRPSRIAAIPIGYADGLNRHLGCGH----------GY 776 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G P +G I MD+ M D+TD GD IFG ++ + ++ A T Y++L Sbjct: 777 CLVNGKKAPYVGNICMDVCMIDVTDI-DCREGDQAIIFGDELPITVLSDALETIPYEVLT 835 Query: 360 RIGTRYAKFY 369 I TR + Y Sbjct: 836 GISTRVKRVY 845 >gi|311111926|ref|YP_003983148.1| alanine racemase [Rothia dentocariosa ATCC 17931] gi|310943420|gb|ADP39714.1| alanine racemase [Rothia dentocariosa ATCC 17931] Length = 437 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 156/387 (40%), Gaps = 28/387 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL AL++N + + G + AVVK +AYG G +A ++ AG V V E Sbjct: 22 AIIDLNALEHNTRVLKDMIGERKLIAVVKADAYGHGAYPVARSVLEAGADILGVVHVTEA 81 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR A I + ++I S L+V Sbjct: 82 LELRSEGITAPIIAWLHTPQTDFDEALEADIILGASGWDLEAIAEAANRTKKRARVHLKV 141 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G + ++ + + L ++ I SHLA AD+P + Q+ R Sbjct: 142 DTGLGRNGSTFEDWPALVARALELEAAGLVRIEGIFSHLAVADEPERPETARQITRLNEF 201 Query: 186 I-----SHYKGIEASLASSSGILLGPNYHF--------QLTRPGISLYGGTDKIN---KS 229 + + LA+S G + G + + R GI+LYG + K Sbjct: 202 VTVARSAGLTPELVHLANSPGTITGASPLYNTNEAVLADAVRCGIALYGLSPLAGVSSKD 261 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T + +++ AG+ VSYG + + + +A+ +GYADG P G Sbjct: 262 LNLRPVMTLGTHVCNVKEVPAGQGVSYGLRYSTDKPTTLALIPLGYADGVPRIAEGAPVR 321 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-----GDYIQIF--GPDIK 342 P + ++G+I MD + D+ + + G +F G + Sbjct: 322 IYPRADAANPV--EPRTYRVVGRIAMDQLVVDLEEPGLADPARGILGGSAVLFGSGDNPP 379 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +++ A A+ T NY+++ RI R + Y Sbjct: 380 VEEWAAAAQTINYEIVTRISPRVIRIY 406 >gi|282849282|ref|ZP_06258667.1| alanine racemase [Veillonella parvula ATCC 17745] gi|282580986|gb|EFB86384.1| alanine racemase [Veillonella parvula ATCC 17745] Length = 370 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L I+ + ++ N + +L + + AV+K N YG G + G + V Sbjct: 2 RPTYLTINTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 EE V LR I++L P +++ DTN IP + L K+ + + Sbjct: 62 IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALDKVADNHDMII 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 A+ VDTG +R+G+ ++A++F + + ++ SH++ AD Q ++F Sbjct: 122 RVAVAVDTGMHRIGIKPEDAIEFIKRIESYENLEIDGFFSHMSNADAADQSHAHSQTQKF 181 Query: 183 RTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 ++ + LA+S+G+L + F RPGI YG ++ ++ Sbjct: 182 HHMVDEIRAFRPEADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + ++ ++ AGE + YG IA +GYADGYP +LS Sbjct: 242 VLSFHSEVVHVQHIPAGEGIGYGSTYITAEPMTIATIPVGYADGYPRSLSNR-------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I G P++G+I MD M + D+++++ GD + + G I ++A + Sbjct: 294 ---GTVLIHGTRCPVVGRICMDQFMVAVPDTITVKPGDKVVLLGSQGHESISALEIAALA 350 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ R + Y Sbjct: 351 STIPYEIFCGFSERVPRQY 369 >gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] Length = 825 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 151/373 (40%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ +N + A+ N + ++K + YG G +IA L + V Sbjct: 464 TTLEVNLNAMVDNLNYYRAMMHPNTKLVCMIKADGYGAGAVEIAKTLQDHRADYLAVAVA 523 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EG LR + I ++ K +FD +L P + S L K P Sbjct: 524 DEGATLRRNGITSSIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLEALIKAAEKEGITGFP 582 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 +++DTG +RLG + + N+ + SH +D D + Q ER Sbjct: 583 VHIKLDTGMHRLGFDPEKDVPRLIERLHNQNALIPKSVFSHFVGSDADQFDDFSQQQFER 642 Query: 182 FR-----TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F + I + +S+GI P + R G+ LYG + N + Sbjct: 643 FDVGSKMLQAAFEHHILRHIDNSAGIEHFPQRQLDMCRLGLGLYGINPRNNAIINNVS-- 700 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T I+ +RK AG+ V Y + + DS+IA IGYADG L Sbjct: 701 TLRTTILQLRKVKAGDTVGYSRRGTIDHDSVIAAIPIGYADGLNRRLGNR---------- 750 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G + +G I MD+ M D+T GD ++IFG ++ + ++ A T Y+ Sbjct: 751 NGYCLVNNQQAEYVGNICMDVAMIDVTGI-DCHEGDSVEIFGDNLPVTVLSDALQTIPYE 809 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 810 VLTGISNRVNRVY 822 >gi|303257818|ref|ZP_07343828.1| alanine racemase [Burkholderiales bacterium 1_1_47] gi|330998760|ref|ZP_08322488.1| alanine racemase [Parasutterella excrementihominis YIT 11859] gi|302859421|gb|EFL82502.1| alanine racemase [Burkholderiales bacterium 1_1_47] gi|329576257|gb|EGG57773.1| alanine racemase [Parasutterella excrementihominis YIT 11859] Length = 360 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 17/368 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R ID AL+ N + A SGN VVK NAYG G + P + V + Sbjct: 3 RPIRALIDTYALEKNLSLLRAKSGNRFLWGVVKANAYGHGLIGLLPTF-DNWVDGLALLD 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EGV +R + ++ GI ++ + VI + Q+ + K + Sbjct: 62 PKEGVDIRKAGWAKAVLLIEGIFAASDIEMADEYGFETVIHNERQIEWLEKAELKN-TLR 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+ +TG NRLG + N ++ +++H A A+ V ++ Sbjct: 121 VHLKCNTGMNRLGFRPEAIPQVLFRLNNIPKVEVVDLLAHFANAEVTYEQDKPVTVQNQL 180 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 + +G+ S++G +L + R GI++YG + N +S + V+T E+ Sbjct: 181 AALIQLRGLLPMCLSNTGGILWHEAGDEAVRAGIAMYGVSPDGNVSSQSLGIDPVMTLES 240 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II + GE YG + R + +AV A GYADGYP + Sbjct: 241 EIIAFQDLQPGEACGYGSKFIAHRPTKLAVVACGYADGYPRK-----------DNPHREV 289 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++G VP++G ++MDM D+TD ++ +G ++I+G ++ +++VA GT Y+LL Sbjct: 290 VVEGKRVPVIGNVSMDMLTIDVTDLPNVRLGSKVEIWGKNLPVNEVAKGFGTIGYELLCD 349 Query: 361 IGTRYAKF 368 + R + Sbjct: 350 VNQRVPRV 357 >gi|303231043|ref|ZP_07317785.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6] gi|302514307|gb|EFL56307.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6] Length = 370 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 164/379 (43%), Gaps = 25/379 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L ID + ++ N + +L + + AV+K N YG G + G + V Sbjct: 2 RPTYLTIDTSLVRENLRKIKDSLPEWSTSTAVIKANGYGHGSVMMGRIAVEEGYESLAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 EE V LR I++L P +++ DTN IP + L +K+ + + Sbjct: 62 IPEESVPLRNAGIMVPIYLLGLTRPQSFELVADTNSIPAVCESTDLEALNKVADNHDMII 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 A+ VDTG +R+G+ + A++F + + SH++ AD Q ++F Sbjct: 122 RVAVAVDTGMHRIGIKPENAVEFIKRIESYPNLAVDGFFSHMSNADAADQSHAHGQAQKF 181 Query: 183 RTLISHYKGIEAS------LASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 ++ + LA+S+G+L + F RPGI YG ++ ++ Sbjct: 182 HKMVDEIRAFRPDADYRFSLANSAGLLSVKDSLFTDARPGIIQYGIMPSLDVPNRLGLKP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + ++ ++ AGE + YG IA +GYADGYP +LS Sbjct: 242 VLSFHSEVVHVQHLEAGEGIGYGSTYVTPEPMTIATIPVGYADGYPRSLSNR-------- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I+G P++G+I MD M I D+++++ GD + + G I ++A + Sbjct: 294 ---GTVLIQGTRCPVVGRICMDQFMVAIPDTITVKPGDKVVLLGSQGHESISALEIAALA 350 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T Y++ R + Y Sbjct: 351 STIPYEIFCGFSDRVPRQY 369 >gi|215486418|ref|YP_002328849.1| alanine racemase [Escherichia coli O127:H6 str. E2348/69] gi|312966424|ref|ZP_07780646.1| alanine racemase [Escherichia coli 2362-75] gi|215264490|emb|CAS08857.1| alanine racemase 2, PLP-binding [Escherichia coli O127:H6 str. E2348/69] gi|312288877|gb|EFR16775.1| alanine racemase [Escherichia coli 2362-75] Length = 356 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SLA+S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLANSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|188595863|pdb|2VD9|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus Anthracis (Ba0252) With Bound L-Ala-P gi|188595864|pdb|2VD9|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus Anthracis (Ba0252) With Bound L-Ala-P Length = 391 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVVK NAYG +A AG Sbjct: 3 MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAG 62 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + L Sbjct: 63 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ + E F + +L + +H A AD+ + Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ + I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 303 ------------EVLVNGXRVPIVGRVTMDQFMIHLP--CEVPLGTXVTLIGRQGDEYIS 348 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375 >gi|319949830|ref|ZP_08023848.1| alanine racemase [Dietzia cinnamea P4] gi|319436508|gb|EFV91610.1| alanine racemase [Dietzia cinnamea P4] Length = 409 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 160/376 (42%), Gaps = 26/376 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R +IDL A+++N + + AR AVVK +AYG G ++ A G VT++ E Sbjct: 11 RAEIDLDAIEHNSRVLVRSARGARVMAVVKADAYGHGAVPVSLAALRGGAHALGVTTIAE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYAL 126 ++LR A I + + + + + S T G Sbjct: 71 ALQLRSAGIDAEILAWLYSVSDDVRAAVEADVDLAIPSPAHLDTVLEAARRTGRRARVTP 130 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++DTG R G+SL+E L +++ +++H A ADDP + V +Q+ R Sbjct: 131 KIDTGLARSGISLEEWPAVLERLVTATAGGLVEVTGLMAHFAHADDPGNPVIDLQVARLH 190 Query: 184 TLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + +G A+S+ L P F++ RPGI+LYG + +T Sbjct: 191 ECVGQARGRGLDCPVNHHANSAATLTRPEDGFEMVRPGIALYGLNPVEGLEVDLVPAMTF 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A ++++++ AG+ VSYG D+ +A+ A GYADG LSG Sbjct: 251 SAEVLMVKRLAAGQGVSYGHTWHAPHDTTVALIAAGYADGVWRLLSGRLD---------- 300 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGP----DIKLDDVALASGT 352 I G P +G++ MD + D+ + VGD +FG + A GT Sbjct: 301 -VSIGGRRYPNVGRVCMDQFVVDLGPDPGQAVRVGDTAVLFGTGADGGPTAAEWAETLGT 359 Query: 353 TNYDLLVRIGTRYAKF 368 +Y+++ + R A+ Sbjct: 360 IHYEVVTAVRGRAARH 375 >gi|242371567|ref|ZP_04817141.1| alanine racemase [Staphylococcus epidermidis M23864:W1] gi|242350719|gb|EES42320.1| alanine racemase [Staphylococcus epidermidis M23864:W1] Length = 382 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 161/377 (42%), Gaps = 27/377 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++L A+ N+ + L N +V+K N+YGLG +IA L G F V + Sbjct: 7 RPTYLNVNLDAILANYQIFDQLHHNKTVISVIKANSYGLGSVRIAQHLMEHGASFFAVAT 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSH 122 ++E ++LR++ +A+I +L I + + S L + Sbjct: 67 LDEAIELRMHGIKAKILILGVIRTEDISKAIQHRVALTVPSKAWLKEAIKNIPEDNEKKL 126 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++DTG RLG+ ++E + ++ + +H A AD+P +N Q E Sbjct: 127 WLHAKLDTGMGRLGMKDVEEYREVVDLIDKREHLVFEGVYTHFASADEPGDSMN-EQFEF 185 Query: 182 FRTLISHYKGIEASL-ASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVV 236 F+T+++ + +S+ LL R GISLYG + ++ Sbjct: 186 FKTVVNQVEKPTYIHTQNSAASLLMDGQFCNAIRLGISLYGYYPSQYVKDHVKVHLRPSA 245 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + I+ ++ AGE VSYG K T + IA+ IGYADGY + Sbjct: 246 QLVSEIVQVKTLKAGETVSYGRTFKATEEMRIAILPIGYADGYLRAMQ------------ 293 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGT 352 G + G+ ++G++ MD T+ + + ++VGD + + I + +A T Sbjct: 294 GAYVNVNGHQCEVVGRVCMDQTILRVPE--DVKVGDKVILMDNHIDSPQSAEALAEKQQT 351 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++L I R + Y Sbjct: 352 INYEVLCNISRRLPRIY 368 >gi|262375308|ref|ZP_06068541.1| alanine racemase [Acinetobacter lwoffii SH145] gi|262309562|gb|EEY90692.1| alanine racemase [Acinetobacter lwoffii SH145] Length = 356 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 161/360 (44%), Gaps = 23/360 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL+ N + + L+ A+ ++VK NAYG G + AL F V ++E ++ Sbjct: 8 IDSAALQYNLNRVKQLAPTAKIVSMVKANAYGHGVKDCLAALSE--TDAFGVACLQEALE 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLM--SCGVSHPYALQ 127 +R I ++ G+ E I + N+ V+ QL + ++ Sbjct: 66 IRELGYLQPITLIEGVFSADEMPIVIEQNIEVVVHHQAQLDWLLAHKETYIAKDLKVWVK 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + D H + + + A A+ +N Q+ +F + + Sbjct: 126 LNSGMNRLGFKIDVIKDVIHTLKAEGFSCVLAMHFANADAE---HPLNDEQIRQFLEIKN 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTAEARIIL 244 I AS +S+ I P HF RPGI LYG T ++ + V+T A II Sbjct: 183 DCAPILASCCNSAAIYKYPELHFDYVRPGIMLYGATPFADRDVHDLDLKPVMTFTAEIIA 242 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + + AGE V YG ++ +A+ +IGY DGYP I G Sbjct: 243 LNEIQAGEHVGYGSTFTADQNMTLAIVSIGYGDGYPRAF-----------PKQNYVAING 291 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ++G++ MDM D+T +++G ++++G +DDVA A+GT Y+LL R+ R Sbjct: 292 QQTRVIGRVAMDMIAIDVTGL-DVQLGTEVELWGKTRLIDDVAEANGTIGYELLCRLSNR 350 >gi|225076292|ref|ZP_03719491.1| hypothetical protein NEIFLAOT_01333 [Neisseria flavescens NRL30031/H210] gi|224952416|gb|EEG33625.1| hypothetical protein NEIFLAOT_01333 [Neisseria flavescens NRL30031/H210] Length = 352 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 16/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L+ N+ + L GN + AV+K +AYG G + A AL + F V + Sbjct: 2 RPLNAQIRLDNLRQNYRFLKELHGN-KLLAVIKADAYGHGAVRCAHALADI-ADGFAVAT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+EGV+LR + I +L G+ E D + Sbjct: 60 VDEGVELRQNGIKNPIVLLEGVFDAAEYADVDRYDLWPAIGSQWQLEAFVHHEWQRPTTV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G + + + SH ACAD+P + + +QLE F Sbjct: 120 WLKMDSGMHRAGFFPHNYAAAYTALKQSESVENIVKFSHFACADEPENGMTEMQLEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +G E SLA+S+ IL P R G++LYG + ++ V+ +R+ Sbjct: 180 ACEGLEGEE-SLANSAAILNVPEARRNWGRAGLALYGISPFGGVDERLKPVMRLTSRVFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R + YG ++ + + + A GYADGYP S + G Sbjct: 239 ERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRRAS-----------TNSPVAVDG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MDM ++ S +G ++++G I +++V+ + Y++L I R Sbjct: 288 KRSRIIGRVSMDMITVELEASKE-GLGAEVELWGDVININEVSEVASMIPYEILCNI-KR 345 Query: 365 YAKFY 369 Y Sbjct: 346 AKFTY 350 >gi|196232506|ref|ZP_03131358.1| alanine racemase [Chthoniobacter flavus Ellin428] gi|196223268|gb|EDY17786.1| alanine racemase [Chthoniobacter flavus Ellin428] Length = 335 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 22/346 (6%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 AVVK NAYG G +A AL + F V +V E +LR + P A IF+L P + Sbjct: 1 MAVVKANAYGHGLGPVAKALVGH-AEMFGVATVGEAEELRSHVPDAPIFILGPALPDERL 59 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 + IP IS+V + Y+ ++ P L +DTG R+G+ +A+ + Sbjct: 60 PVVTGCFIPAISTVEEARAYAA-LTGAKPLPVHLLIDTGMGRVGILQDDAVATAREILSL 118 Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPN 207 + ++ + SHL AD+ QL +F ++ + + + +S+GI+ P Sbjct: 119 RGLTVTGLASHLPVADE-DDAFTREQLAQFHQVVGQLRSLGISQPVVHVENSAGIISYPT 177 Query: 208 YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267 + R G+ +YG + ++ V+T + R+ L+R+ AG +SYG R Sbjct: 178 QAGDMVRAGLMIYGSSPVPEFQPKLRAVMTWKTRVTLVREMPAGHGISYGRTFITPRPMR 237 Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327 IA +GYADGY LS ++ I G P+LG++TMD + D++ Sbjct: 238 IATLGVGYADGYQRHLSNRSAD----------VLIGGQRCPVLGRVTMDQILADVSALPQ 287 Query: 328 IEVGDYIQIF----GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + GD + G +I ++A SGT +++ +G R + Y Sbjct: 288 VTAGDEAVLIGSQGGEEISAAELAQKSGTIPWEIFTGVGRRVERAY 333 >gi|73662116|ref|YP_300897.1| alanine racemase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643046|sp|Q49Z24|ALR_STAS1 RecName: Full=Alanine racemase gi|72494631|dbj|BAE17952.1| alanine racemase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 382 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 155/382 (40%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S+++ R + +DL A+ N+ L N VVK N YGLG K+A L + G + Sbjct: 2 SDKYYRSTYVNVDLNAIVANFQVFQKLHPNKTVMPVVKANGYGLGSIKVARQLMDNGAEF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A+I VL I + + S S Sbjct: 62 FAVATLDEAIELRMHGIDAKILVLGVIPTEHINKAIQHRVAITVPSKSWLVEAVKEIPES 121 Query: 118 CGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++DTG RLG+ +E + + +H ACAD+P +N Sbjct: 122 NEKDLWIHVKLDTGMGRLGMKTAEEYKEVIELINGHSHLIFEGVFTHFACADEPGDSMNR 181 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKI----NKSHP 231 Q F ++ + + +S L + F R GISLYG N Sbjct: 182 QQTM-FEEIVGQADKPDYIHSQNSAGALMKDTQFCNAVRVGISLYGYYPSAYVKSNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + I+ + AGE VSYG + I V +GYADGYP + G Sbjct: 241 LKPSAQWISEIVQTKLLHAGESVSYGSVYTADEKTKIGVIPVGYADGYPRMMKGFS---- 296 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + G ++GK+ MD T+ I D I+VGD + I + +A Sbjct: 297 --------VNVNGKQCEVIGKVCMDQTIIKIPD--EIQVGDKVIIMDHHSDTPQSAEALA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L R+ R + Y Sbjct: 347 HQQQTINYEVLCRLSRRLPRVY 368 >gi|332201121|gb|EGJ15192.1| alanine racemase [Streptococcus pneumoniae GA47901] Length = 367 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 153/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEAPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|148994015|ref|ZP_01823371.1| alanine racemase [Streptococcus pneumoniae SP9-BS68] gi|168484889|ref|ZP_02709834.1| alanine racemase [Streptococcus pneumoniae CDC1873-00] gi|168488585|ref|ZP_02712784.1| alanine racemase [Streptococcus pneumoniae SP195] gi|147927482|gb|EDK78510.1| alanine racemase [Streptococcus pneumoniae SP9-BS68] gi|172041957|gb|EDT50003.1| alanine racemase [Streptococcus pneumoniae CDC1873-00] gi|183572801|gb|EDT93329.1| alanine racemase [Streptococcus pneumoniae SP195] gi|332072526|gb|EGI83009.1| alanine racemase [Streptococcus pneumoniae GA17570] Length = 367 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|55821698|ref|YP_140140.1| alanine racemase [Streptococcus thermophilus LMG 18311] gi|81820398|sp|Q5M2S7|ALR_STRT2 RecName: Full=Alanine racemase gi|55737683|gb|AAV61325.1| alanine racemase [Streptococcus thermophilus LMG 18311] Length = 367 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K+DL+A+ N + + +T AVVK NAYG G ++A + V Sbjct: 1 MISSLHRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L + P + N+ ++S+ LT K Sbjct: 60 DGFCVSNLDEALELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLTLAQKQGL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + D + I +H A AD+ Sbjct: 120 DLTGLTCHIKVDSGMGRIGVRNLKDADNLIAGLKALGADVEGIFTHFATADEADDSKFKR 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L+ + + +S+ + F R G+ +YG + + + Sbjct: 180 QLSFFTDLVDNLTDRPRLVHASNSATSIWHAATVFNTVRLGVVIYGLNPSGSVLELPYNI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E +I ++ AG+ V YG T + +I IGYADG+ L G Sbjct: 240 QPALSLETALIHVKTLPAGQDVGYGATYTTTDEEVIGTLPIGYADGWTRDLQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + PI+G+++MD + + G + + G + I +VA Sbjct: 294 ------HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGVSITATEVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCLLSDRVPRSY 366 >gi|34540830|ref|NP_905309.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Porphyromonas gingivalis W83] gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas gingivalis W83] Length = 823 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 162/370 (43%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L+A+ +N + L +T +VK YG+G ++ L V V +E Sbjct: 465 LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR I V+ + + D L P I S L +S+ + V +P Sbjct: 525 GKELRERGIGMPIVVMNPQRNA-FQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYPVH 583 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184 +++DTG +RLG + + + +HLA ADDP QL F Sbjct: 584 IKIDTGMHRLGFLPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPDLDDFTRSQLLSFDA 643 Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + +++G+ +YH + R GI LYG T + V T Sbjct: 644 AFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTASGVQGLRP--VATLM 701 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I+ + + V YG + ++ + S IA+ IGYADG LS G+ Sbjct: 702 TTILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYADGLDRRLSCGV----------GE 751 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G+ PI+G + MD+ M D+T E GD + +FG ++ +++VA T Y++L Sbjct: 752 VLVRGHRCPIVGNVCMDICMIDVTGMP-AEEGDPVVVFGEELPIEEVARKMNTIPYEVLT 810 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 811 GISPRVRRVY 820 >gi|118594787|ref|ZP_01552134.1| alanine racemase [Methylophilales bacterium HTCC2181] gi|118440565|gb|EAV47192.1| alanine racemase [Methylophilales bacterium HTCC2181] Length = 358 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 157/370 (42%), Gaps = 21/370 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ A +N + + S N++ AV+K NAYG G + A AL + F V + Sbjct: 2 RALKASFHSAAFSSNLKRVKSYSPNSKVMAVLKANAYGHGLIEAARALND--ADGFSVLT 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E ++LR + + +L G E I I + Q Y + Sbjct: 60 LSEAIELREHGFTQHLLLLEGFFKPYEVKICSLMGIGAVIHHAQQIDYINQVKPVKPIDV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V+TG NRLG ++ +I++H + AD + QL F Sbjct: 120 HLKVNTGMNRLGFMPKDVDLILKQLEESPYINKIVIMTHFSDADGEKG--VASQLACFNE 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEAR 241 I E S+A+S+ I+ P HF+ RPGI LYG + +K ++ V++ + Sbjct: 178 -IKGIDIYERSVANSAAIIKYPETHFEWVRPGIMLYGASPFDDKTGNDFQLKPVMSLRSE 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II I+ + V YG + + A GYADGYP G Sbjct: 237 IIAIQTLEESQSVGYGSVFTAPHKMTVGIVACGYADGYPRHA-----------PSGTPLM 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + +G+++MDM D++ + VG ++++G + +D+VA S T Y+LL I Sbjct: 286 VDGVITQTVGRVSMDMLYVDLSSLPNAGVGSSVELWGKGVLVDEVARQSHTVGYELLCAI 345 Query: 362 --GTRYAKFY 369 +R Y Sbjct: 346 SASSRVPMEY 355 >gi|223933704|ref|ZP_03625679.1| alanine racemase [Streptococcus suis 89/1591] gi|302024422|ref|ZP_07249633.1| alanine racemase [Streptococcus suis 05HAS68] gi|330833424|ref|YP_004402249.1| alanine racemase [Streptococcus suis ST3] gi|223897620|gb|EEF64006.1| alanine racemase [Streptococcus suis 89/1591] gi|329307647|gb|AEB82063.1| alanine racemase [Streptococcus suis ST3] Length = 367 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 149/376 (39%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++++L A+ N+ M L AVVK NAYG G +A L + F V Sbjct: 6 HRPTQIRVNLDAIAENFEQVMTNLPHKTEAFAVVKANAYGHGAVAVAKKLSSQ-AAGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR + I +L + + N+ ++S+ L L + Sbjct: 65 SNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNISVTVASLDWLQDAKDLEADLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG R+G L + + + +H A AD+ QL F Sbjct: 125 TVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIEGVYTHFATADEVDQAHFEYQLSIF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + + + +S+ + + F L R G LYG + +Q ++ Sbjct: 185 KEFLDVLPITPRWIHASNSATSIWHADTVFNLVRLGNILYGLNPSGRVLELPFDVQPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I+ +++ G + YG IA IGYADG +L GL Sbjct: 245 LVSEIVHVKQVETGTTIGYGATYHSADSEWIATVPIGYADGLVRSLQGLS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G I+G+I+MD + + + G + + G D I + + A GT Sbjct: 295 --VLVDGQACEIVGRISMDQITIRLPHAYPL--GQKVTLIGQDGDKTISVQEWADCIGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + + Sbjct: 351 NYEVVCLLTDRLPRIF 366 >gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Prevotella ruminicola 23] gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Prevotella ruminicola 23] Length = 792 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + + + ++K +AYG G +IA L + V V +E Sbjct: 433 LEVNLNAVVENLNYYRSFMKPETKMVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 492 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV LR A I ++ K +FD +L P + S L K P Sbjct: 493 GVTLRKAGITANIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALIKAARKEGITGWPVH 551 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG + + + +++ + SH +D D + +++Q +RF Sbjct: 552 IKLDTGMHRLGFDPEQDMDELIDRLTHQQAVIPRSVFSHFVGSDSDDFDNFSTLQFKRFE 611 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +S+GI P+ + R G+ LYG + N+ TV T Sbjct: 612 MGSQKLQAAFSHKILRHIDNSAGIEHFPDRQLDMCRLGLGLYGIDSRDNRIL--HTVSTL 669 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ + + E V Y + KLTRDS+IA IGYADG L Sbjct: 670 KTTILQMHQVPKSETVGYSRKGKLTRDSVIAAIPIGYADGLNRRLGNRHC---------- 719 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ + D+TD + GD ++IFG + + ++ T Y++L Sbjct: 720 YCLVNGQKAEYVGNICMDVALIDVTDIP-CQEGDQVEIFGEHLPVTVLSDVLETIPYEVL 778 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 779 TGISNRVKRVY 789 >gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010] gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010] Length = 826 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 155/371 (41%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + +L + ++K +AYG G +IA L + V V +E Sbjct: 467 LEVNLNAVVANLNWYRSLMKPETKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV LR + I ++ K +FD +L P + S L K P Sbjct: 527 GVTLRKNGITSNIMIMNPEMSS-FKTLFDFDLEPEVYSFRILDALVKAAEKEGITGFPVH 585 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERF- 182 +++DTG +RLG + + + ++ + SH +D D ++ Q F Sbjct: 586 IKLDTGMHRLGFDPISDIDELINRLKHQNAIIPRSVFSHFVGSDSDGFDDFSAQQFALFD 645 Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + + I + +S+GI P+ + R G+ LYG + N+ + T Sbjct: 646 AGSKKLQAAFSHKILRHIDNSAGIEHFPSRQLDMCRLGLGLYGINPRTNERINTIS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R +G+ V Y + + DS+IA IGYADG L G Sbjct: 704 KTTILQLRNVPSGDTVGYSRKGTIQHDSVIAAIPIGYADGLNRHLGNRH----------G 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 754 YCLVGGQKAAYVGNICMDVAMIDVTGI-DCKEGDSVEIFGEHLPVTVLSDILDTIPYEIL 812 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 813 TNISNRVKRIY 823 >gi|239990088|ref|ZP_04710752.1| putative alanine racemase [Streptomyces roseosporus NRRL 11379] Length = 390 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 150/382 (39%), Gaps = 31/382 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N + + A+ AVVK + YG G A A AG + Sbjct: 8 RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAARAAGATWLGTATP 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR RI G + + ++ + L + Sbjct: 68 HEALALRAAGLDGRIMCWLWTPGGPWREAIEADIDVSAGGMWALREIAAAAEAAGRPARV 127 Query: 126 L-QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLER 181 + DTG R G + + + + + I SH ACAD+P + QL Sbjct: 128 QLKADTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAV 187 Query: 182 FRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 +R L++ LA+S L P HF L R GI++YG + + Sbjct: 188 YRDLVAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+T A + L++ A AG VSYG ++ + + +GYADG P SG Sbjct: 248 RPVMTLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASGS------ 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVA 347 G + G + + G++ MD + D+ D G +FGP + D A Sbjct: 302 -----GPVLVGGKVRTVAGRVAMDQFVVDLEGDRPEA--GAEAVLFGPGDRGEPTAQDWA 354 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 A+ T Y+++ RIG R + Y Sbjct: 355 EAADTIAYEIVTRIGARVPRVY 376 >gi|168487532|ref|ZP_02712040.1| alanine racemase [Streptococcus pneumoniae CDC1087-00] gi|183569644|gb|EDT90172.1| alanine racemase [Streptococcus pneumoniae CDC1087-00] Length = 367 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ I L A++ N M AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKVLIHLGAIRQNIQQMGTHIPQGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|62180365|ref|YP_216782.1| alanine racemase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583706|ref|YP_002637504.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127998|gb|AAX65701.1| alanine racemase 2, catabolic [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468233|gb|ACN46063.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714840|gb|EFZ06411.1| alanine racemase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 356 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ GE V YGG+ +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSVGERVGYGGRYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|152964696|ref|YP_001360480.1| alanine racemase [Kineococcus radiotolerans SRS30216] gi|151359213|gb|ABS02216.1| alanine racemase [Kineococcus radiotolerans SRS30216] Length = 415 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 149/382 (39%), Gaps = 25/382 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+ N + G + AVVK +AYG G A A G V V Sbjct: 8 PAEAVVDLDAIARNVAVVRERVGGPQVMAVVKADAYGHGLVPAARAALAGGATWLGVAHV 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E + LR +A + + +++V + + + Sbjct: 68 HEALALRGAGVEADLLAWILTPGTDLVPALRRGVDVSVAAVWALEEVVAAARASATTARI 127 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VDTG +R G S +E ++ +H A AD P QL Sbjct: 128 HLEVDTGMSRGGASPEEWPALLDAVAGHVADGTVRVRGTWAHFASADVPGDPSVPAQLAA 187 Query: 182 FRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPM 232 F + + G+E A+S+ L P + L R G++ YG + + + Sbjct: 188 FEAALGTARRHGVEPGLRHHANSAAALFVPQARYDLVRVGLAAYGLSPAPDLATGADLGL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 +T +AR+ +R+ G VSYG RD+ + + +GY DG P S Sbjct: 248 VPAMTLQARLAHVRRVPRGAGVSYGLTYTAERDTTLGLVPLGYGDGLPRHASWDGERS-- 305 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G+ + G I G++ MD + D+ D + G+ + GP + DD A Sbjct: 306 -----GEVLVAGARRRIAGRVCMDQVVLDLGDDA-VAPGEVAVVLGPGTRGEATADDWAR 359 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 A+GT +++++ R+G R + YT Sbjct: 360 AAGTISWEIVTRVGARVPRRYT 381 >gi|3661473|gb|AAC61705.1| alanine racemase [Escherichia coli] Length = 356 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I A+ G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P + Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGRMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGRSPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------LTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|168491420|ref|ZP_02715563.1| alanine racemase [Streptococcus pneumoniae CDC0288-04] gi|183574262|gb|EDT94790.1| alanine racemase [Streptococcus pneumoniae CDC0288-04] Length = 367 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHDVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|116628421|ref|YP_821040.1| alanine racemase [Streptococcus thermophilus LMD-9] gi|122266984|sp|Q03IX8|ALR_STRTD RecName: Full=Alanine racemase gi|116101698|gb|ABJ66844.1| alanine racemase [Streptococcus thermophilus LMD-9] Length = 367 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + K+DL+A+ N + + +T AVVK NAYG G ++A + V F V Sbjct: 6 HRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-VDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR + I +L + P + N+ ++S+ L K + Sbjct: 65 SNLDEALELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLALAQKQGLDLIGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VD+G R+G+ + D + I +H A AD+ QL F Sbjct: 125 TCHIKVDSGMGRIGVRNLKDADNLIAGLKALGADVEGIFTHFATADEADDSKFKRQLSFF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 L+ + + +S+ + F R G+ +YG + + +Q ++ Sbjct: 185 TDLVDNLTDRPRLVHASNSATSIWHAATVFNTVRLGVVIYGLNPSGSVLELPYNIQPALS 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E +I ++ AG+ V YG T + +I IGYADG+ L G Sbjct: 245 LETALIHVKTLPAGQDVGYGATYTTTAEEVIGTLPIGYADGWTRDLQGF----------- 293 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G + PI+G+++MD + + G + + G + I +VA GT Sbjct: 294 -HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAEKRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L + R + Y Sbjct: 351 NYEVLCLLSDRVPRSY 366 >gi|172063006|ref|YP_001810657.1| alanine racemase [Burkholderia ambifaria MC40-6] gi|171995523|gb|ACB66441.1| alanine racemase [Burkholderia ambifaria MC40-6] Length = 373 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 155/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + A+++N + + +R AV+K NAYG G E+I P L + Sbjct: 3 RPIVAHVRPDAVRHNLDFIRRTAAQSRVWAVIKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPADVELADRHRLTVAVHCDEQLDVLIAAKPRQPLDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ QLE+F Sbjct: 121 QLKMNSGMNRLGYRPHAFRAAWERAAAAPSIGKITLMMHFANADEGE---VDWQLEQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S ++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGIPG-ERSASNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMPAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + R I V A GYADGYP G Sbjct: 237 KIIGVQTLAPDETVGYGRRFTADRPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVVGRVSMDMLTVDLTPCPNAGIGSGVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTRYA 366 + R Sbjct: 346 LAHRVP 351 >gi|78211897|ref|YP_380676.1| alanine racemase [Synechococcus sp. CC9605] gi|78196356|gb|ABB34121.1| alanine racemase [Synechococcus sp. CC9605] Length = 376 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 110/381 (28%), Positives = 174/381 (45%), Gaps = 24/381 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ + +++ A++ N ++ L + AVVK + YG G E +A A G Sbjct: 5 LNPRQRAWVEVSPAAIRANARALCQHLGPRTQLMAVVKADGYGHGAETVARAALQGGATS 64 Query: 60 FFVTSVEEGVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMS 117 V +++EG++LR +A + + P + L+P +SS+ + Sbjct: 65 LGVATLQEGLELRRAGLEAPVLLLSNLNEPDDLRTCLHWRLMPTLSSLRDAQLCNALAAD 124 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G L++DTG RLG SL E + + L I SHLACAD+P + S+ Sbjct: 125 SGRCFDVQLKIDTGMARLGCSLSEGHQTAAVLQSLEHLNLEGIYSHLACADEPDDALTSL 184 Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231 Q ERF +++S GI LA+S+G LL H L R G++LYG +N P Sbjct: 185 QQERFVSMLSALPRGGAGITRHLANSAGTLLNRELHHDLVRVGLALYGHAPASHLNNVIP 244 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q + AR+ LIR +AG VSYG + R + +AV IGYADG +LSG Sbjct: 245 LQPALAVRARVSLIRDVIAGTGVSYGHRFITQRPTRLAVVGIGYADGVLRSLSGHI---- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 +P +G ITMD + D TD+ +E GD + + G D + + + Sbjct: 301 -------HALHSNRQLPQVGAITMDQLLLDATDAAGLEPGDIVTLLGQDGDLELSPQNWS 353 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 G+ +++L R + Sbjct: 354 DHCGSIPWEILCGFKRRLPRV 374 >gi|194442850|ref|YP_002041058.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401513|gb|ACF61735.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 356 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 161/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLWAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ GE V YGG+ +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSVGERVGYGGRYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|325681053|ref|ZP_08160585.1| alanine racemase [Ruminococcus albus 8] gi|324107282|gb|EGC01566.1| alanine racemase [Ruminococcus albus 8] Length = 374 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 145/382 (37%), Gaps = 27/382 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + +IDL+A++ N L VVK YG I P L G + Sbjct: 1 MDYIKRCWAEIDLSAVEYNVTEYKKLLPAGTELMYVVKAACYGHDDSLIVPFLQEKLGAE 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V ++E ++LR I +L P +I N+I + + S + Sbjct: 61 YFAVADLDEAIRLRGMGISGDILILGYTLPEYAPLIAKHNVIQACTDLSYARELS--KNA 118 Query: 119 GVSHPYALQVDTGFNRLGLS--LQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSH 173 + VDTG R+G+ +E L I +H + AD Sbjct: 119 EGTVRVHGAVDTGMTRIGVHGTAEEQAAELSEIAATPNIALEGIFTHFSSADGTAQADDD 178 Query: 174 VNSVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 ++Q ERF + + A + +S+G G L R GI +YG K Sbjct: 179 YTNMQAERFFRVRDLLTAGGIELKHAHIKNSAGGAYGFGEGSTLARLGIIMYGLYPDPAK 238 Query: 229 SHPMQTV--VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 P + +T +A + ++ AG VSYG R +A GYADGYP LS Sbjct: 239 PLPFEPKPVMTWKAVVSQVKWIDAGTAVSYGRTFVSDRRMKLATITAGYADGYPRALSN- 297 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 G+ I G I G++ MD M D+TD I GD + ++ D + Sbjct: 298 ----------KGEVIIGGKRCRICGRVCMDQFMCDVTDLPDIRSGDEAILMDAEMNADHL 347 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A +GT Y++ I R + Sbjct: 348 AALTGTIGYEITCGISPRVPRV 369 >gi|16129153|ref|NP_415708.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr. MG1655] gi|89108035|ref|AP_001815.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr. W3110] gi|170080818|ref|YP_001730138.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr. DH10B] gi|238900421|ref|YP_002926217.1| alanine racemase 2, PLP-binding [Escherichia coli BW2952] gi|256023134|ref|ZP_05436999.1| alanine racemase [Escherichia sp. 4_1_40B] gi|300951652|ref|ZP_07165476.1| alanine racemase [Escherichia coli MS 116-1] gi|300955586|ref|ZP_07167944.1| alanine racemase [Escherichia coli MS 175-1] gi|301029512|ref|ZP_07192593.1| alanine racemase [Escherichia coli MS 196-1] gi|2506172|sp|P29012|ALR2_ECOLI RecName: Full=Alanine racemase, catabolic gi|1651592|dbj|BAA36045.1| alanine racemase 2, PLP-binding [Escherichia coli str. K12 substr. W3110] gi|1787439|gb|AAC74274.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr. MG1655] gi|169888653|gb|ACB02360.1| alanine racemase 2, PLP-binding [Escherichia coli str. K-12 substr. DH10B] gi|238859950|gb|ACR61948.1| alanine racemase 2, PLP-binding [Escherichia coli BW2952] gi|260449676|gb|ACX40098.1| alanine racemase [Escherichia coli DH1] gi|299877620|gb|EFI85831.1| alanine racemase [Escherichia coli MS 196-1] gi|300317515|gb|EFJ67299.1| alanine racemase [Escherichia coli MS 175-1] gi|300449098|gb|EFK12718.1| alanine racemase [Escherichia coli MS 116-1] gi|309701490|emb|CBJ00797.1| alanine racemase, catabolic [Escherichia coli ETEC H10407] gi|315135826|dbj|BAJ42985.1| alanine racemase [Escherichia coli DH1] gi|323937908|gb|EGB34172.1| alanine racemase [Escherichia coli E1520] gi|323942468|gb|EGB38636.1| alanine racemase [Escherichia coli E482] gi|332342769|gb|AEE56103.1| alanine racemase [Escherichia coli UMNK88] Length = 356 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I A+ G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|315501356|ref|YP_004080243.1| alanine racemase [Micromonospora sp. L5] gi|315407975|gb|ADU06092.1| alanine racemase [Micromonospora sp. L5] Length = 372 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 159/375 (42%), Gaps = 27/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +++DL A++ N + A + +A AVVK + YG G A A +AG V +++E Sbjct: 6 VRVDLDAIRENVTRLKAGT-SAELMAVVKGDGYGHGMVPAARAALDAGADQLGVCTLDEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 ++LR A + + + + Q L+ Sbjct: 65 LRLREEGITAPVLAWLLSPGLPLHDGITVGVDLGCAGLTQLDEMIQASRRADRPARLHLK 124 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +DTG R G ++ + + + L ++ + SH AD P QL F+ Sbjct: 125 IDTGLARGGATVADWPALLEAAAKAQADGLVEVVGVWSHFVYADSPGHPTTDRQLAVFQE 184 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + LA+S+ L P+ HF L RPGI++YG + + ++ +TA Sbjct: 185 GLEMVTRAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAVYGLSPVAGEQFGLRPAMTAR 244 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 AR++L ++ AG VSYG +++ +AV +GYADG P S G Sbjct: 245 ARVMLTKRVAAGTGVSYGHTYLTEQEANLAVVPLGYADGVPRHASNT-----------GP 293 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355 + G I G++ MD + D D + GD +FG + DD A A GT NY Sbjct: 294 VQLAGKRRTISGRVCMDQFVVDCGDD-EVADGDVATLFGSGADGEPTADDWAEAVGTINY 352 Query: 356 DLLVRIGT-RYAKFY 369 +++ R G R + Y Sbjct: 353 EIVTRFGGVRVPRVY 367 >gi|255326888|ref|ZP_05367964.1| alanine racemase [Rothia mucilaginosa ATCC 25296] gi|255296105|gb|EET75446.1| alanine racemase [Rothia mucilaginosa ATCC 25296] Length = 437 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 161/391 (41%), Gaps = 30/391 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL AL++N + L G+ AV+K +AYG G +A + AG V V E Sbjct: 25 ATIDLDALEHNVRRLKELIGDRALIAVIKADAYGHGAYPVARSAIAAGADLLGVVHVNEA 84 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR +A + + +S + G L+ Sbjct: 85 LELRADGIEAPLMAWLHTPSTDFDAALQEKIHLGVSGWDLEAVAAAAERTGERAIVHLKA 144 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G + + + + L + I SHLA AD+P+ + QL+ T Sbjct: 145 DTGLGRNGATAADWPALVARAACLEESGLITVEGIFSHLAVADEPTRAETAQQLDTLDTF 204 Query: 186 ISHYK--GIEASLASSSG-------ILLGPNYH----FQLTRPGISLYGGTDKIN---KS 229 ++ + G++ + + L G + R G++LYG + + Sbjct: 205 VAQAREAGLDPKIVHLANSPATLTASLEGWDTEERLLGDGVRCGLALYGLSPLPEVTAED 264 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T + I +++ AG+ VSYG + + + +A+ +GYADG P Sbjct: 265 LGLKPVMTVGSYIAAVKEVPAGQGVSYGLRYHTPKATTLALVPLGYADGVPRIAENAPVR 324 Query: 290 HSPSVFLGGKGFI----KGYMVPILGKITMDMTMFDITD----SLSIE-VGDYIQIF--G 338 P G + +G ++G+I MD + D+ + ++ +G +F G Sbjct: 325 IYPGAQNAEDGSVPNNTEGKTYRVVGRIAMDQMVVDLGEPGLSDPALGYLGAPAILFGAG 384 Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +++ A A+ T NY+++ RI +R + Y Sbjct: 385 ENPPVEEWADAAQTINYEIVTRISSRVERLY 415 >gi|227894495|ref|ZP_04012300.1| alanine racemase [Lactobacillus ultunensis DSM 16047] gi|227863654|gb|EEJ71075.1| alanine racemase [Lactobacillus ultunensis DSM 16047] Length = 376 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 144/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A++ N + + L+ + AVVK NAYG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIRRNLENEIKHLAPGQKMLAVVKANAYGHGAVEVAKVATEVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I ++ + ++ L K + Sbjct: 66 AILDEALQLRRADIVKPILVLGVVSPEYAPIAAVNDVSLTVPNLEWLKEAEKYLAKENLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 L +D+G R+G S E + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFSEDEDFIAANKFLENNDHFFVEGMFAHFASADSADETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV--- 235 +F + S + +++ + L R GI +YG N P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHEGIKSDLVRFGIGIYGLNPSSNPDSPDLNPAFK 245 Query: 236 ----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ E+ + ++ G+ V YG +D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHKGDGVGYGSTFVADKDTIIGTVPVGYADGWIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347 K + PI+G+I MD M + + + + G + I + + A Sbjct: 301 -------KVKVGDKYCPIVGRICMDQFMVKLPEKMPV--GTKVVIISNNPADPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ +G R + Y Sbjct: 352 DYVDTIHYEVACLLGDRLPRVY 373 >gi|332882707|ref|ZP_08450318.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679209|gb|EGJ52195.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 369 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 21/378 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + E + L+IDLTAL+ N + L AVVK ++YG +IA + Sbjct: 1 MKTEETV-LEIDLTALERNIQYLKSRLKPTTWFLAVVKASSYGNEATQIAAYIEKKKLAN 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V EG+ LR I VL+ + II + S F Sbjct: 60 YFAVAYTSEGIALRKRGISLPIIVLHPQSINFDDIIKYQLEPTLYSLRTAHLFLEYAEKH 119 Query: 119 GVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNS 176 +S +P L+ +TG NRLG + + N ++ SHLA ++D + Sbjct: 120 QLSDYPVHLKCNTGLNRLGFDFNQIDEVLSLLKNNATVKVKTAYSHLAASEDMNEKVFTE 179 Query: 177 VQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q++RF + ++SGIL P F + R GI +YG + Sbjct: 180 NQIQRFIAFQEKVNQTFAHKVIYHQCNTSGILNYPEAQFDMVRSGIGMYGFANDAALQPY 239 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +++ ++ I I + G+ + Y + A +G+ADG Sbjct: 240 LTPIMSLKSVISQIHRLEIGDSLGYNRGYIADHITKTATIPVGHADGINRIYG------- 292 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G FI G PILG + MDM M DIT E GD + +F D + +A ++G Sbjct: 293 ---KGKGFVFIHGKKAPILGNVCMDMIMVDITHI-DCEEGDEVIVFDKDHTAETLAESAG 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+L+ + R + Y Sbjct: 349 TISYELMTSMAHRIKRLY 366 >gi|330821390|ref|YP_004350252.1| Alanine racemase [Burkholderia gladioli BSR3] gi|327373385|gb|AEA64740.1| Alanine racemase [Burkholderia gladioli BSR3] Length = 375 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +I A+++N + + ++R AVVK NAYG G E+I P L + Sbjct: 3 RPILAQIRPAAVRHNLAVIRRRAASSRVWAVVKANAYGHGIERIYPGLAE--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L G+ + I D + V P+ Sbjct: 61 LDEAVRVRELGWTRPVLLLEGLFEAADVAIADRYRLSVAVHTPEQLDMLAAARPTRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++ H A AD+ + Q++ F Sbjct: 121 QLKMNSGMNRLGFRPDVYREAWQRASTTPAVGRIALMMHFANADEGQA---DWQMQVFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEA 240 G E +L++S+G+L P H RPG LYG + + + +T + Sbjct: 178 ATQGLPG-ERTLSNSAGVLWHPAAHRDWVRPGTILYGASPTGVARDIADTGLLPAMTLSS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I I+ A E V YG + + + V A GYADGYP G Sbjct: 237 RLIGIQTIEANETVGYGRRFAASSAMRVGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T + +G ++++G + +D+VA A+ T Y+L+ Sbjct: 286 VVDGVRTRVVGRVSMDMLTVDLTPCPNARIGSPVELWGSQVHVDEVAEAASTIGYELICA 345 Query: 361 IGTRYA 366 I R Sbjct: 346 IARRVP 351 >gi|87124994|ref|ZP_01080841.1| putative Alanine racemase [Synechococcus sp. RS9917] gi|86167314|gb|EAQ68574.1| putative Alanine racemase [Synechococcus sp. RS9917] Length = 390 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 104/379 (27%), Positives = 161/379 (42%), Gaps = 26/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + L++ A+ +N S+ +L AVVK + YG G +A A G V Sbjct: 20 RQRAWLEVAPAAISHNARSIRSLLRPGCALMAVVKADGYGHGAVTVARAALAGGATQLGV 79 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--SCGV 120 +++EG++LR + + V+ + + + S + + + G Sbjct: 80 ATLQEGIELRQAGLREPVLVMGNLTQADDLRRCLHWQLMPTLSGMREALLCQNLASDSGR 139 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNS 176 L++DTG RLG QEA +L I SHLA AD + V Sbjct: 140 RFDVQLKLDTGMTRLGCDWQEAPRLVDAIQQLDRIRLEGIYSHLALADGDPNGDGERVTQ 199 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-- 232 Q +RFR + LA+S+G L P H L R G++LYG + + H + Sbjct: 200 QQHQRFREALRLLPEGDAVHHLANSAGTLRDPELHHDLVRVGLALYGHSPSPHLDHAVAL 259 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T AR+ LIR+ AG VSYG + R S +AV AIGYADG LSG Sbjct: 260 EPAMTVRARVSLIRQVGAGVGVSYGHRFITARPSRLAVVAIGYADGVSRALSGRIC---- 315 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 +G +P +G ITMD + D+TD ++E G + + G D I D + Sbjct: 316 -------ALHQGRRLPQVGAITMDQLILDVTDHPNLEPGAVVTLLGRDGDLTIHPRDWSD 368 Query: 349 ASGTTNYDLLVRIGTRYAK 367 + +++L R + Sbjct: 369 QCDSIPWEVLCGFKHRLPR 387 >gi|168241390|ref|ZP_02666322.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462709|ref|ZP_02696640.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194451208|ref|YP_002045847.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409512|gb|ACF69731.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633999|gb|EDX52351.1| alanine racemase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205339703|gb|EDZ26467.1| alanine racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 356 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIAEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|145704|gb|AAC36881.1| catabolic alanine racemase [Escherichia coli] Length = 356 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I A+ G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P + Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGRMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGRSPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------LTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAVRVP 352 >gi|158317753|ref|YP_001510261.1| alanine racemase [Frankia sp. EAN1pec] gi|158113158|gb|ABW15355.1| alanine racemase [Frankia sp. EAN1pec] Length = 380 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 166/376 (44%), Gaps = 29/376 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L A++++ ++ A +G A T AVVK + YG G A A +AG +EE + Sbjct: 16 IELDAVRDSVAALVARAGAAATMAVVKADGYGHGMLPCARAALDAGASWLGTAFLEEALA 75 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYALQVD 129 LR + + ++ S+ + + G + L++D Sbjct: 76 LRAAGITVPVLSWLAAPGERLAAGIAADVDLSASAGWALDDLAAAARTAGRAARVHLKID 135 Query: 130 TGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERF--RT 184 TG R G + ++ ++ + L ++ + SH A AD P Q+ RF Sbjct: 136 TGLGRAGATGEDWPGLCDSAAALEADGLIEVVGVWSHFAFADAPGHPTVQAQISRFGDAV 195 Query: 185 LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVT 237 ++ G+ LA+S+ L+ P HF + RPG+S+YG + P + +T Sbjct: 196 DVARKAGLRPQVRHLANSAATLVSPEAHFDMVRPGVSVYGLSPGPEVGPPSAFGLRPAMT 255 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A I L+++ AG VSY + + + ++ +AV +GYADG P + + Sbjct: 256 LRASIALVKRVPAGTGVSYAHRYRTSAETGLAVVPLGYADGIPRSATNT----------- 304 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 + + G I G + MD + D+ + VGD + +FGP + DD A A GT Sbjct: 305 AEVLVGGRRRRIAGTVCMDQFVMDVGADP-VRVGDEVILFGPGDRGEPTADDWARALGTI 363 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ RIG R + Y Sbjct: 364 NYEIVTRIGPRVPRVY 379 >gi|254449940|ref|ZP_05063377.1| alanine racemase [Octadecabacter antarcticus 238] gi|198264346|gb|EDY88616.1| alanine racemase [Octadecabacter antarcticus 238] Length = 345 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 186/363 (51%), Gaps = 26/363 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL AL NW S++A++ + T AVVK + YGLG K+ AL AGV+ FFV EEG Sbjct: 6 LSVDLDALTANWRSLDAMT-DVETCAVVKADGYGLGVAKVGRALMKAGVKRFFVAVPEEG 64 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 LR P I + G G +I D L P+I+++ Q ++ + HP+ +Q Sbjct: 65 AILRHAVGPNVEICIFAGHMRGDTDMIADMMLTPMINTIGQ---LTRHLEALPDHPFGVQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL + E + + L++SHLACAD P +N QL++F + Sbjct: 122 LDTGMNRLGLEIDEWASIAEIALTQ---NCRLVMSHLACADTPDHPMNRKQLDQFHLMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ GILLGP YHF +TRPGI LYGG + + +I +R Sbjct: 179 G-INVPRSLAATGGILLGPEYHFDMTRPGIGLYGGAPFADALPVAYLDL----PVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y R S IA + GYADG LS G + V Sbjct: 234 VEIGETVGYANAWTAQRPSKIATLSGGYADGLTRALS-----------AGANLWHGAQPV 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+++MD+ D+TD + G + + G D +D++A +GT Y++L +G RY + Sbjct: 283 PLVGRVSMDLITADVTDLPEL-PG-VLSVLGLDQTVDELAARAGTIGYEILTSLGPRYER 340 Query: 368 FYT 370 Y+ Sbjct: 341 RYS 343 >gi|301794676|emb|CBW37127.1| alanine racemase [Streptococcus pneumoniae INV104] Length = 367 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG + + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLALPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ I+ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHIKTVPAGACMGYGATYQTDSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|194337539|ref|YP_002019333.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1] gi|194310016|gb|ACF44716.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1] Length = 365 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 100/377 (26%), Positives = 157/377 (41%), Gaps = 26/377 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + L L N + G AR +VK NAYG ++A L +GV+DF V + Sbjct: 1 MTEALVSLDNLAWNTSLIRKRVGGSARIMGIVKANAYGHNVHRVAETLEKSGVRDFGVAN 60 Query: 65 VEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCGV 120 + E ++L+ A I P ++ S+ + + Sbjct: 61 IHEAIELKTGGALKKPANILAFSSPLPSHIPFFLHHDIEMTLCDSLTLQSAEEIAAAENK 120 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + L+VDTG RLG A++ + +L I +H AD ++ + QL+ Sbjct: 121 TIAVQLKVDTGMGRLGTPPAVAMELLRQIDHSPHLELKGIYTHF--ADSSTAEGTTKQLD 178 Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQ 233 F+TL + Y+ + A+S IL P + RPGI LYG N ++ Sbjct: 179 AFKTLTAEYEHASSKTVCKHAANSGAILSAPESWLDMVRPGILLYGYHPTKNSPCRLDVR 238 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ EA++I ++K AG +SY IA A GYADGY LSG + Sbjct: 239 PVMQFEAKVIFVKKVPAGTTISYNRTWTANEPRSIATIAAGYADGYTRALSGRAT----- 293 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGT 352 I G P +G +TMD M D+ ++ GD +FG I D +A +GT Sbjct: 294 ------VMINGNTYPQVGIVTMDQIMVDLGTRHDVKTGDTATLFGWEGIGADSLAGLAGT 347 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y++L + R + + Sbjct: 348 ISYEMLCSVSARVKRIF 364 >gi|161613692|ref|YP_001587657.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168820548|ref|ZP_02832548.1| alanine racemase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|161363056|gb|ABX66824.1| hypothetical protein SPAB_01417 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205342561|gb|EDZ29325.1| alanine racemase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085692|emb|CBY95470.1| alanine racemase 2, catabolic [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 356 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|317485550|ref|ZP_07944427.1| alanine racemase [Bilophila wadsworthia 3_1_6] gi|316923230|gb|EFV44439.1| alanine racemase [Bilophila wadsworthia 3_1_6] Length = 384 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 106/378 (28%), Positives = 168/378 (44%), Gaps = 32/378 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + + L L++N ++ L+ + V+K +AYG G +A L G+Q V SV EG Sbjct: 8 ITVHLENLRHNLKTL--LARHPSLMPVIKADAYGHGVVAVARVLAEEGIQHMAVGSVGEG 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI----PVISSVPQLTFYSKLMSCGVSHPY 124 LR A + L G+ ++ + + I S+ ++ S L Sbjct: 66 ALLRQEGHTAFLLALMGLARDEDTALAASYDITPLVHSRESLERILAQSHLTGRAKPLTV 125 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFR 183 A++ DTG +RLG + EA + K + L++SHLA +D P+ Q RF Sbjct: 126 AIKFDTGMSRLGFRVDEAAELADYLRTLKEVRPVLVMSHLAASDTPALDDFTHEQARRFH 185 Query: 184 TLISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQT 234 G++ SL +S G+L P+Y L RPG++LYGG + Sbjct: 186 EATESMKAVFPGLKTSLTNSPGLLCWPSYVGDLARPGVTLYGGNPLHGTDRAKLGMGLLP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ A ++ + + G VSYG +D AV GYADGYP +LS Sbjct: 246 VMEMAAPVLSVHPVVKGATVSYGCLYTAPKDIRAAVVGAGYADGYPRSLSMR-------- 297 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I+G PILG++ M M + D+TD +E GD + G I+ +++A Sbjct: 298 ---GSVLIRGQRAPILGRVCMQMCIVDVTDIPGVEPGDTAYLLGGSGPLAIRPEELAEWW 354 Query: 351 GTTNYDLLVRIGTRYAKF 368 GT +Y++ +G R + Sbjct: 355 GTISYEVFCALG-RNRRV 371 >gi|207856691|ref|YP_002243342.1| alanine racemase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708494|emb|CAR32815.1| Alanine racemase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 356 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLNAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|317124143|ref|YP_004098255.1| alanine racemase [Intrasporangium calvum DSM 43043] gi|315588231|gb|ADU47528.1| alanine racemase [Intrasporangium calvum DSM 43043] Length = 387 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 25/378 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + +IDL A ++N ++ A + +++ AVVK + YG G +A A AG V Sbjct: 12 VWAEIDLDAFEDNVRTLRARAPHSQLMAVVKADGYGHGLLPVARAAVRAGADWLGVAQPT 71 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E LR RI + ++ S+ L + G S Sbjct: 72 EAFALRDAGVTTRILTWLSVPGTDFAGAVRRDIDVSASAPWTLDAIAGAARSEGRSARVH 131 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG R G + ++ + + I +H A AD P Q + F Sbjct: 132 LKVDTGLGRGGAFGTDWPTLVEHARRLESEGAISVVGIWTHFAMADAPEHPTVLAQQDTF 191 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 + + + LA+S+ L+ P H L RPGI++YG + ++ V Sbjct: 192 FEAVATAERAGVRPEVRHLANSAATLVHPAAHADLVRPGIAMYGLSPVPEVADDFGLRPV 251 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T AR+ L+++ AG +SYG D+++ + GYADG P + + + Sbjct: 252 MTLRARLALVKRWPAGRGISYGHVYAPEVDTVVGLVPAGYADGVPRSATNV--------- 302 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG---PDIKLDDVALASGT 352 + I G++ MD + D+ + GD + +FG D A A+ T Sbjct: 303 --APVQVGARRTTIAGRVCMDQFVVDLGPDSAAAAGDVVTLFGKPSEGPTAQDWADATET 360 Query: 353 TNYDLLVRIGTRYAKFYT 370 +Y+++ RIG R + ++ Sbjct: 361 ISYEIVTRIGARVPRLWS 378 >gi|229829044|ref|ZP_04455113.1| hypothetical protein GCWU000342_01129 [Shuttleworthia satelles DSM 14600] gi|229792207|gb|EEP28321.1| hypothetical protein GCWU000342_01129 [Shuttleworthia satelles DSM 14600] Length = 387 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 27/382 (7%) Query: 4 NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFF 61 ++ + + IDL A++ N +M + + + R AVVK +AYG G +IA L + V + Sbjct: 3 HKRVWMDIDLDAVRANVDAMFDRMRPDCRMMAVVKADAYGHGAREIAALLEPDQRVFGYA 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 V +V+E +LR + I +L P + + + P I S + + G+ Sbjct: 63 VATVDEAYELRRHQISKPILILGYSFPEEYPAMVRLGIRPAIFSYESALAFDRAASQAGM 122 Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P +++DTG +R+G + +E L K ++ I +H A AD+ Q Sbjct: 123 IAPVHIKIDTGMSRIGFQVDEEDLSQAARIAQLKHLRMEGIFTHFARADEKDKSHAYAQA 182 Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPM 232 + F+ I + ++S+ I+ P + + R GISLYG P+ Sbjct: 183 DLFQQAIDRLERAGVEFEIRHCSNSASIMELPELNMDMVRAGISLYGLWPSEEMDPNFPL 242 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ + I I+ G +SYGG ++ + IA +GYADGY LS Sbjct: 243 SAAMSLGSHITHIKTLGEGRCISYGGTYQVKGKAKIATIPVGYADGYARGLSNR------ 296 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G I+G PI+G+I MD M D++ I VG+ + + G D I L+++ Sbjct: 297 -----GYVLIQGKRAPIVGRICMDQFMVDVSAFDHIAVGEKVTLLGEDGKERISLEELGR 351 Query: 349 ASGTTNYDLLVRIG-TRYAKFY 369 SG NY+ +G R K + Sbjct: 352 LSGRFNYEFACLLGNRRIPKVF 373 >gi|222054518|ref|YP_002536880.1| alanine racemase [Geobacter sp. FRC-32] gi|221563807|gb|ACM19779.1| alanine racemase [Geobacter sp. FRC-32] Length = 351 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 155/358 (43%), Gaps = 27/358 (7%) Query: 28 GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87 AVVK +AYG G I+ L + GV F V + EG++LR I +L GI+ Sbjct: 4 PGCGLLAVVKADAYGHGFMDISLELESLGVTAFGVAFLAEGIQLRKSGIDRPILILGGIY 63 Query: 88 PGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 PGQEK N+ + S+ Q L+VDTG RLG+++ EA F Sbjct: 64 PGQEKKCVGFNISTAVFSLEQAKALDETARKLYRKAKVHLKVDTGMGRLGVTIAEAGAFL 123 Query: 147 HNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERFRTLISHYKGI-----EASLAS 198 K +L I SH A AD+ + + Q E F ++ K + +A+ Sbjct: 124 RELRGLKNIELEGIFSHFASADELDESGNRYTAQQAEIFALVLQDAKKVGFSPTYVHIAN 183 Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVVTAEARIILIRKALAGELVSY 256 S+ L RPGI LYG + ++ V+ ++R+ +++ +SY Sbjct: 184 SAAAFSRDLPFCNLMRPGIVLYGALPSADFKGKIDVKPVMRLKSRVAMLKWVEQDTSISY 243 Query: 257 GGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMD 316 + +L+A +GYADGY L+ G+ I+G + G + MD Sbjct: 244 ARRYVSQGKTLVASVPVGYADGYDRGLTN-----------KGEALIRGQRARVAGTVCMD 292 Query: 317 MTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M D+T ++VGD + + G D I +++A +GT Y++ I R + Y Sbjct: 293 WIMLDVTHIPGVQVGDEVTLLGCDGQGNCIHAEELAELAGTIPYEIFCGISKRVPRVY 350 >gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1] gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1] Length = 824 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 156/371 (42%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + +L + + ++K +AYG G ++A L + V V +E Sbjct: 465 LEVNLNAIVDNLNYYRSLLKHGTKLVCMIKADAYGAGAVEVAKTLQDHRVDYLAVAVADE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV LR A I V+ K++FD +L P + S L K +P Sbjct: 525 GVTLRKNGITANIMVMNPEMSS-FKMLFDYDLEPEVYSFRLLDALVKAAEKEGITDYPVH 583 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHVNSVQLERFR 183 +++DTG +RLG Q+ + + ++ + + D ++ Q F Sbjct: 584 IKLDTGMHRLGFDPQKDMQTLISRLKRQNAIIPRSVFSHFVGSDSDDFDSFSAQQFALFD 643 Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + I + +S+GI P + R G+ LYG + N+ + V T Sbjct: 644 EGSKLLQAAFTHKIIRHMDNSAGIEHFPERQLDMCRLGLGLYGINPRTNQ--VIHQVSTL 701 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 I+ R+ AG+ V Y + + DS+IA IGYADG L G Sbjct: 702 RTTILQKREVKAGDTVGYSRKGTIAHDSVIAAIPIGYADGLNRRLGNRH----------G 751 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G P +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 752 YCLVNGQRAPYVGNICMDVAMIDVTGI-DCKEGDRVEIFGEHLPVTVLSDILETIPYEVL 810 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 811 TSVSNRVKRVY 821 >gi|238912133|ref|ZP_04655970.1| alanine racemase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 356 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---CSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] Length = 826 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + ++K +AYG G +IA L + V V +E Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAAEIAKTLQDHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 GV LR + I ++ K +FD +L P + L + P Sbjct: 527 GVTLRKNGITSNIMIMNPEMSS-FKTLFDYDLEPEVYCFRLLDALVKAAQKEGITGFPVH 585 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG Q + + ++ + SH +D D ++ Q F Sbjct: 586 IKLDTGMHRLGFDPQKDMDELISRLKHQNAIIPRSVFSHFVGSDADSFDDFSARQFALFE 645 Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + I + +S+GI P + R G+ LYG + NK + T Sbjct: 646 EGSGKLQSAFKHKIIRHMDNSAGIEHFPERQMDMCRLGLGLYGINPRTNKIINNVS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + + DSLIA IGYADG L Sbjct: 704 KTTILQLRHVPAGDTVGYSRKGTVEHDSLIAAIPIGYADGLNRHLGNRHC---------- 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 754 YCLVNGKKAAYVGNICMDVAMVDVTGI-DCKEGDSVEIFGDHLPVTVLSDVLDTIPYEVL 812 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 813 TTVSNRVKRVY 823 >gi|114704797|ref|ZP_01437705.1| alanine racemase [Fulvimarina pelagi HTCC2506] gi|114539582|gb|EAU42702.1| alanine racemase [Fulvimarina pelagi HTCC2506] Length = 396 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 137/371 (36%), Positives = 205/371 (55%), Gaps = 10/371 (2%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R++ID ALK NW ++ ++ NA+T A VK + YGLG +++ AL+ AG ++FFV Sbjct: 26 RLPRVEIDRGALKRNWAALASIHPNAQTGAAVKADGYGLGAVEVSRALFEAGCRNFFVAW 85 Query: 65 VEEGVKLRLY----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 EEG +R AR+FVL G+ P + + D +L+PV+SS LT + L + Sbjct: 86 PEEGQIVRSALAPKNKNARVFVLQGMEPAAVRFLTDHDLVPVLSSPDDLTIWTEGLTALA 145 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P ALQ++TG NRLGL + L +++L+++HLA AD + Q Sbjct: 146 RRAPAALQLETGMNRLGLD-ERGLGKAMALVEAGELEVALLLTHLASADVSPED-SEAQR 203 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 RF + + + I SLA+S+G++ G ++ LTRPGI+LYGG + + V Sbjct: 204 IRFSAMSARFPYISRSLANSAGLVCGESFGLDLTRPGIALYGGMGCLGGLIATEPVARLS 263 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A +I +R+ AGE V Y G +LTR ++IA IGY DGY LSG Sbjct: 264 AAVIQVREVEAGEKVGYAGAARLTRRTIIATLGIGYGDGYLRALSGAGVPLRMDRPAASA 323 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 I G VP+LG+I+MD+T+ D+TD S+ GD ++FGP++ +D VA A+GT Y+L Sbjct: 324 V-ISGCAVPVLGRISMDLTLLDVTDLPAGSVRPGDRAELFGPNMPIDKVAEAAGTIPYEL 382 Query: 358 LVRIGTRYAKF 368 L +G R + Sbjct: 383 LTGLGPRVQRV 393 >gi|55823619|ref|YP_142060.1| alanine racemase [Streptococcus thermophilus CNRZ1066] gi|81820232|sp|Q5LY71|ALR_STRT1 RecName: Full=Alanine racemase gi|55739604|gb|AAV63245.1| alanine racemase [Streptococcus thermophilus CNRZ1066] gi|312279040|gb|ADQ63697.1| Alanine racemase [Streptococcus thermophilus ND03] Length = 367 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 157/381 (41%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K+DL+A+ N + + +T AVVK NAYG G ++A + V Sbjct: 1 MISSLHRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L + P + N+ ++S+ L K Sbjct: 60 DGFCVSNLDEALELRQAGIEQPILILGVVLPDGVPLAIQENISLTVASLEWLALAQKQGL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + D + I +H A AD+ Sbjct: 120 DLTGLTCHIKVDSGMGRIGVRNLKDADNLIAGLKALGADVEGIFTHFATADEADDSKFKR 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L+ + + +S+ + F R G+ +YG + + + Sbjct: 180 QLSFFTDLVDNLTARPRLVHASNSATSIWHATTVFNTVRLGVVIYGLNPSGSVLELPYNI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ E +I ++ AG+ V YG T + +I IGYADG+ L G Sbjct: 240 QPALSLETALIHVKTLPAGQEVGYGATYTTTAEEVIGTLPIGYADGWTRDLQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + PI+G+++MD + + G + + G + I +VA Sbjct: 294 ------HVIVDGQLCPIVGRVSMDQITVRLPKVYPL--GTPVTLMGENGGASITATEVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCLLSDRVPRSY 366 >gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289] gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289] Length = 826 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + ++K +AYG G +IA L + V V +E Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 GV LR + I ++ K +FD +L P + L + P Sbjct: 527 GVTLRKNGITSNIMIMNPEMSS-FKTLFDYDLEPEVYCFRLLDALVKAAQKEGITGFPVH 585 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG Q + + ++ + SH +D D ++ Q F Sbjct: 586 IKLDTGMHRLGFDPQKDMDELISRLKHQNAIIPRSVFSHFVGSDADSFDGFSARQFALFE 645 Query: 184 T-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + I + +S+GI P + R G+ LYG + NK + T Sbjct: 646 EGSGKLQSAFKHKIIRHMDNSAGIEHFPERQMDMCRLGLGLYGINPRTNKIINNVS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + + DSLIA IGYADG L Sbjct: 704 KTTILQLRHVPAGDTVGYSRKGTIEHDSLIAAIPIGYADGLNRHLGNRHC---------- 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 754 YCLVNGKKAAYVGNICMDVAMIDVTGI-DCKEGDSVEIFGDHLPVTVLSDVLDTIPYEVL 812 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 813 TTVSNRVKRVY 823 >gi|168233845|ref|ZP_02658903.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471678|ref|ZP_03077662.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458042|gb|EDX46881.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332109|gb|EDZ18873.1| alanine racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 356 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ GE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSVGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|77406426|ref|ZP_00783484.1| alanine racemase [Streptococcus agalactiae H36B] gi|77174959|gb|EAO77770.1| alanine racemase [Streptococcus agalactiae H36B] Length = 366 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 162/381 (42%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + R IDL A+ NN S+ + +T AVVK NAYG G +++ + V Sbjct: 1 MISSYHRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKY-IESIV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR I VL + P Q + + N+ ++S+ L Sbjct: 60 DGFCVSNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAV 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ + + + + + I +H A AD+ + + Sbjct: 120 DLSGLEVHIKVDSGMGRIGVRQLDEGNKLISELGESGASVKGIFTHFATADEADNCKFNQ 179 Query: 178 QLERFRTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F+ IS ++S+ L F R G+ +YG ++ +P+ Sbjct: 180 QLTFFKDFISGLDNCPDLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 ++ E+ ++ +++ G V YG ++T D + IGYADG+ + G Sbjct: 240 NPALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFS----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G + I+G+++MD + + +G + G I DVA Sbjct: 295 -------VIVNGELCEIIGRVSMDQMTIRLPQKYT--IGTKVTXIGQQGSCNITTTDVAQ 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R ++Y Sbjct: 346 KRQTINYEVLCLLSDRIPRYY 366 >gi|148553730|ref|YP_001261312.1| alanine racemase [Sphingomonas wittichii RW1] gi|148498920|gb|ABQ67174.1| alanine racemase [Sphingomonas wittichii RW1] Length = 378 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 196/365 (53%), Gaps = 16/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+IDL A+ +N+ + + A AAVVK +AYGLG ++A AL +AG + FFV + E Sbjct: 12 LRIDLDAIIDNYRLIQQRAAPAEVAAVVKADAYGLGAARVAAALRDAGCRRFFVAHLVEA 71 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 +LR I VL G+ PG E + +PV++++ Q+ + + + P + Sbjct: 72 ARLREAIGDGVEIGVLNGLQPGAETACAELGAVPVLNALDQIERWAALARASSARLPCMI 131 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGL+ E + LI+SHLACAD+P N Q + F Sbjct: 132 QFDTGMSRLGLAPGEVRALIDRPERLDGLDIRLIMSHLACADEPERASNQHQAQAFDAFC 191 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + GI SL +S G LL +H+ + R GI+LYGG + + PM+ VVT +AR+I +R Sbjct: 192 ARFPGIPRSLDNSGGALLPRAHHYDVVRAGIALYGGAPQTGPN-PMRPVVTLDARVIQLR 250 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G V YG + R + +A ++GYADG+P +L G ++ G+ Sbjct: 251 TVEPGTAVGYGLTHRFDRPARLATLSVGYADGWPRSLGNR-----------GAAYVAGHR 299 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 PI+G+I+MD D++D + G I++ GP +DDVA +GT +Y++L ++G R Sbjct: 300 APIVGRISMDSLTIDVSDIPEELLLPGSLIELIGPHQSIDDVARDAGTISYEILTQLGHR 359 Query: 365 YAKFY 369 YA+ Y Sbjct: 360 YARSY 364 >gi|238751628|ref|ZP_04613118.1| Alanine racemase, catabolic [Yersinia rohdei ATCC 43380] gi|238710190|gb|EEQ02418.1| Alanine racemase, catabolic [Yersinia rohdei ATCC 43380] Length = 358 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I+L+AL +N + + G A+ +VVK NAYG G ++ L F + Sbjct: 3 RPISATINLSALHHNLNIVRQHVGAAKIWSVVKANAYGHGLARVWQGLAA--TDGFAMLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G ++ ++ D + Sbjct: 61 LNEAIMLREQGWQGPILLLEGFFQPRDIMLLDHYHLTTTVHSDWQLEAINAARLSAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ ++G NRLG + + + + ++SH A AD+P Q + Sbjct: 121 YLKFNSGMNRLGFPIGQMDAIWQWATSLSNVGDITLMSHFANADNPIG--VGEQFSVIQQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 + LA+S+ IL P HF RPGI LYG + + +Q V++ + Sbjct: 179 ASAAIPAAR-CLANSAAILGNPETHFDWVRPGIILYGASPSGDVADIAEIGLQPVMSLNS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG V YG + + I V A GYADGYP G Sbjct: 238 EIIALQSLTAGHCVGYGSRYQARSAQRIGVVACGYADGYPRLAPN-----------GTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T ++G ++I+G ++ +D VA A+GT Y+L+ Sbjct: 287 MVDGILTQTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDTVAQAAGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LANRVK 352 >gi|226305403|ref|YP_002765361.1| alanine racemase [Rhodococcus erythropolis PR4] gi|226184518|dbj|BAH32622.1| alanine racemase [Rhodococcus erythropolis PR4] Length = 400 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 158/378 (41%), Gaps = 26/378 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +DL A+ +N + +G+A AV+K + Y G +A +AG ++ VT++ Sbjct: 28 TEAVVDLDAIAHNVRVLREFAGDAALMAVIKADGYNHGAVAVARTALSAGARELGVTTIA 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125 E + LR A + +++ +SS G Sbjct: 88 EALVLREAGITAPVLAWLHGLDADFSSAIRSDVEIGVSSPRHLAAVVDAARVLGQQATVT 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERF 182 L+VDTG NR G+S E + + + SHLA +D+P V +Q +R Sbjct: 148 LKVDTGLNRNGVSRTEWPQMLDDLATARDEGTIRLRGVFSHLAHSDEPHHDVIDMQKQRL 207 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 + ++ L++S+ + P+ F + RPGI++YG + ++ + Sbjct: 208 IEAVVDVRARGFEPEVVHLSNSAATVTRPDLQFDMVRPGIAIYGLSPVPELGDFGLRPAM 267 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A++IL++K AGE VSYG Q D+ +A+ +GYADG +LSG Sbjct: 268 TLRAKVILVKKVAAGEGVSYGHQWVAPHDTTLALLPVGYADGLTRSLSGKF--------- 318 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVALASG 351 + + G +G+I MD + D+ D + GD FG + A Sbjct: 319 --EVQLGGKRRQAVGRICMDQVLVDLGPDGDGVREGDTAIFFGNGDHGEPNAQAWADVLD 376 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+++ I R + Y Sbjct: 377 TIHYEVVTGIRGRTVRTY 394 >gi|16765143|ref|NP_460758.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413279|ref|YP_150354.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167993251|ref|ZP_02574346.1| alanine racemase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168259965|ref|ZP_02681938.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197362204|ref|YP_002141841.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|113661|sp|P06191|ALR2_SALTY RecName: Full=Alanine racemase, catabolic gi|153939|gb|AAA27054.1| alanine racemase (dadB) (EC 5.1.1.1) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420333|gb|AAL20717.1| alanine racemase 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127536|gb|AAV77042.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093681|emb|CAR59151.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205328703|gb|EDZ15467.1| alanine racemase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205350739|gb|EDZ37370.1| alanine racemase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246987|emb|CBG24804.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993756|gb|ACY88641.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158326|emb|CBW17825.1| Alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912792|dbj|BAJ36766.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224435|gb|EFX49498.1| Alanine racemase, catabolic [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616798|gb|EFY13706.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620391|gb|EFY17257.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625707|gb|EFY22526.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626157|gb|EFY22967.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322638917|gb|EFY35610.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640736|gb|EFY37386.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644122|gb|EFY40667.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649194|gb|EFY45632.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655353|gb|EFY51661.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660890|gb|EFY57121.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662812|gb|EFY59019.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667996|gb|EFY64155.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674242|gb|EFY70336.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675403|gb|EFY71477.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683182|gb|EFY79198.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686875|gb|EFY82853.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130076|gb|ADX17506.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195234|gb|EFZ80414.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200174|gb|EFZ85260.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203827|gb|EFZ88845.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207381|gb|EFZ92329.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213735|gb|EFZ98517.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217366|gb|EGA02085.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220884|gb|EGA05320.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227984|gb|EGA12132.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231387|gb|EGA15500.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235827|gb|EGA19906.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240396|gb|EGA24439.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245289|gb|EGA29289.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249860|gb|EGA33759.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252850|gb|EGA36686.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257434|gb|EGA41128.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263314|gb|EGA46850.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266762|gb|EGA50248.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268968|gb|EGA52424.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988689|gb|AEF07672.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 356 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|169349572|ref|ZP_02866510.1| hypothetical protein CLOSPI_00299 [Clostridium spiroforme DSM 1552] gi|169293647|gb|EDS75780.1| hypothetical protein CLOSPI_00299 [Clostridium spiroforme DSM 1552] Length = 369 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 166/371 (44%), Gaps = 18/371 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQD 59 M + I+L LK N ++ AV+K +AYG G +++A + + ++ Sbjct: 13 MSLHRDTYAMINLKYLKENIETIYKRFKRP-LMAVIKADAYGHGYKEVASYIKDLEYIEM 71 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSC 118 F V +++E ++LR I +L + +E+I + ++ + + ++ + + Sbjct: 72 FAVATLQEAIELRELGITKGILILGAVPTTKEEIELAISYDISLTMISLEYMYHLQTLIS 131 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++DTG R+GL+ ++ L+ + +++ L I +H A AD + Q Sbjct: 132 NKPLKIHIKLDTGMQRIGLTNKKELEEMLQTIDRRKFILEGIFTHYATADGEEAAFVKQQ 191 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + F L+ ++ +S+ + + L R GI +YG N+S + V++ Sbjct: 192 -QLFYKLVGQHEFKYIHCCNSAAMAYHQDNKSNLGRIGIVMYGIDPAGNESDYYKQVMSL 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 R+ +++K AG V YG +D +A IGYADG G Sbjct: 251 FTRVSMVKKIKAGSRVGYGLTYTAKQDEYLATLPIGYADGIIRKNQGR------------ 298 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + +I G I+G++ MD M + S++VGD ++IFG I L +A T Y+++ Sbjct: 299 RVYINGKYFEIVGRVCMDQMMVRV--DESVKVGDKVEIFGDHISLASMAKDLDTIPYEII 356 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 357 CLISKRVERIY 367 >gi|52081594|ref|YP_080385.1| putative alanine racemase [Bacillus licheniformis ATCC 14580] gi|52786974|ref|YP_092803.1| YncD [Bacillus licheniformis ATCC 14580] gi|319647506|ref|ZP_08001726.1| alanine racemase [Bacillus sp. BT1B_CT2] gi|52004805|gb|AAU24747.1| putative alanine racemase [Bacillus licheniformis ATCC 14580] gi|52349476|gb|AAU42110.1| YncD [Bacillus licheniformis ATCC 14580] gi|317390354|gb|EFV71161.1| alanine racemase [Bacillus sp. BT1B_CT2] Length = 393 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 162/384 (42%), Gaps = 31/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L A+K N + ++ AVVK NAYG G ++A G + V Sbjct: 6 REVWVEVNLDAIKKNLRAFRRHIPKKSKIMAVVKANAYGHGSVEVARHALEHGASELAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GV 120 SVEE V LR +A I VL K N+ V + ++++ Sbjct: 66 SVEEAVVLRKAGIKAPILVLGFTPLSCVKEAAAWNISLSAFQVDWIKEANEILENEADPN 125 Query: 121 SHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG RLG+ +E L + + I +H + AD+P + + +Q Sbjct: 126 RLAVHINVDTGMGRLGVRTKEKLLAIVEALTASENLEWEGIFTHFSTADEPDTELTMIQH 185 Query: 180 ERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---- 230 E+F + + +K + +++ + P + + R GI +YG Sbjct: 186 EKFISFLRFLKEQGFKLPTVHMNNTAAAIAFPEFSADMIRLGIGMYGLYPSDYIRQLNLV 245 Query: 231 PMQTVVTAEARIILIRKA-LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +ARI ++ VSYG R +IA +GYADGY LS Sbjct: 246 KLVPALSLKARIAYVKTMLTEPRTVSYGATYVAERGEVIATIPVGYADGYSRELSNR--- 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G +G VP+ G++TMDM M + + + + + I+G +I +D+ Sbjct: 303 --------GFILHRGRRVPVAGRVTMDMIMVSLGEGEGKQG-EEVVIYGRQKGAEISVDE 353 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY+++ I R +FY Sbjct: 354 IAEMLDTINYEVVSTISWRVPRFY 377 >gi|188995058|ref|YP_001929310.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Porphyromonas gingivalis ATCC 33277] gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277] Length = 823 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 162/370 (43%), Gaps = 23/370 (6%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L+A+ +N + L +T +VK YG+G ++ L V V +E Sbjct: 465 LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G +LR I V+ + + D L P I S L +S+ + V +P Sbjct: 525 GKELRERGISMPIVVMNPQRNA-FQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYPVH 583 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRT 184 +++DTG +RLG + + + +HLA ADDP QL F Sbjct: 584 IKIDTGMHRLGFLPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPDLDDFTRSQLLSFDA 643 Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + +++G+ +YH + R GI LYG T + V T Sbjct: 644 AFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTASGVQGLRP--VATLM 701 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 I+ I+ + + V YG + ++ + S IA+ IGYADG LS G+ Sbjct: 702 TTILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYADGLDRRLSCGV----------GE 751 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ++G+ PI+G + MD+ M D+T E GD + +FG ++ +++VA T Y++L Sbjct: 752 VLVRGHRCPIVGNVCMDICMIDVTGMP-AEEGDPVVVFGEELPIEEVAHKMNTIPYEVLT 810 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 811 GISPRVRRVY 820 >gi|198244745|ref|YP_002215339.1| alanine racemase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939261|gb|ACH76594.1| alanine racemase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623083|gb|EGE29428.1| alanine racemase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 356 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRVMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ +GE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLNSGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|301067541|ref|YP_003789564.1| alanine racemase [Lactobacillus casei str. Zhang] gi|300439948|gb|ADK19714.1| Alanine racemase [Lactobacillus casei str. Zhang] Length = 378 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 150/379 (39%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPAKVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SS L ++ P Sbjct: 67 ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178 L +DTG R+G + +AL Q + I +H A AD P Q Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHSKQFVIEGIFTHFATADAPDDTYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 +++F L+ + +S+ L + + R G+++YG + P+ Sbjct: 187 VDKFNHLVDLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + D I IGYADG+ L G Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + R + Sbjct: 353 YSKTIHYEIACNLTPRLKR 371 >gi|269216099|ref|ZP_06159953.1| alanine racemase [Slackia exigua ATCC 700122] gi|269130358|gb|EEZ61436.1| alanine racemase [Slackia exigua ATCC 700122] Length = 435 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 165/386 (42%), Gaps = 31/386 (8%) Query: 4 NEFLRLKIDLTALKNN-WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++IDL A+++N + + L R AVVK + YG G ++A +AG V Sbjct: 59 RRWSWVEIDLGAIRHNTYANKRCLKPGTRLMAVVKADGYGHGAVQVARTALSAGASQLAV 118 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVS 121 +V+EG++LR A I +L ++ +++P + + + + + G+ Sbjct: 119 ATVDEGIELRRAGIAAPILILSEPPASAAPLLLQHDIMPSVYTPEFAIAYAELADAHGMR 178 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 PY L ++TG NR+G+ EA++F + +H A AD + ++Q R Sbjct: 179 APYHLALNTGMNRIGVRHDEAVEFARQISFHRALDQVGTFTHFATADCAETLDFNLQFRR 238 Query: 182 FRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQT 234 F I + GI+ A+S+ +L P H + R GISLYG + ++ Sbjct: 239 FADAIEGMRVAGIDPGIVHCANSAALLRYPETHMDMVRMGISLYGFHPCPETRGAAVLKP 298 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI + E V YG + T I +GYADG+ LSG Sbjct: 299 AMSVHARITAVNAPQLSEGVGYGLHYRSTGSVRICTVPVGYADGFARALSGRTDF----- 353 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGP----DIKL 343 G +G I MD +MF++ L +VGD + + G + + Sbjct: 354 ------IYGGRRCHQVGNICMDQSMFEVDMRSLGTRPRLDPQVGDEVVVIGEKDGLSVGV 407 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +++ GT Y++ + R K Y Sbjct: 408 EELCDVLGTIPYEVCCALAMRMPKVY 433 >gi|200389510|ref|ZP_03216121.1| alanine racemase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601955|gb|EDZ00501.1| alanine racemase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 356 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---HSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|326406390|gb|ADZ63461.1| alanine racemase [Lactococcus lactis subsp. lactis CV56] Length = 367 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 154/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + + +DL A++NN NA VK +AYG G +++ A+ + V Sbjct: 1 MKTSPHRNTSAIVDLKAIRNNIEKFKKHIHPNAEIWPAVKADAYGHGSVEVSKAVSDL-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I VL GI I N+ S+ L + + Sbjct: 60 GGFCVSNLDEAIELRNHLVTKPILVLSGIVQEDVDIAAALNISLTAPSLEWLKLVVQEEA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 + VD+G R+G+ E + +K I +H A AD Sbjct: 120 ELSDLKIHIGVDSGMGRIGIRDVEEANQMIELADKYAINFEGIFTHFATADMADDTKFKD 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 Q RF +++ + +++ L + R GIS+YG + + Sbjct: 180 QQARFNKIMAGLSRKPKFVHSTNTAAALWHKEQVQAIERLGISMYGLNPSGKTLELPFEI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + + I+K AGE V YG + + ++ I IGYADG+ + G Sbjct: 240 EPALSLVSELTHIKKIAAGETVGYGATYETSEETWIGTVPIGYADGWTRQMQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 K + G I+G++ MD M + S + G + + G D I DVA Sbjct: 294 ------KVLVNGEFCEIVGRVCMDQMMIKLDKSYPL--GTKVTLIGRDKTNEITTTDVAD 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 WRGTINYEVLCLLSDRIKRIY 366 >gi|121603048|ref|YP_980377.1| alanine racemase [Polaromonas naphthalenivorans CJ2] gi|166969423|sp|A1VIH8|ALR_POLNA RecName: Full=Alanine racemase gi|120592017|gb|ABM35456.1| alanine racemase [Polaromonas naphthalenivorans CJ2] Length = 365 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 152/376 (40%), Gaps = 31/376 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I L AL +N + + +A+ AVVK NAYG G E++ AL + F + Sbjct: 3 RPILATIHLAALSHNLARVRTAAPDAKVWAVVKANAYGHGIERVFDALRS--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E +LR + I +L G ++ L I Q+ + + + H Sbjct: 61 LDEARRLRALDWRGPILLLEGCFEARDLELCSRLGLWHTIHCQEQIDMLAAHKTQ-LPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NRLG + + ++ H AD P QL+ F Sbjct: 120 VFLKMNTGMNRLGFTPERFRAAWIRLNALPQVDEISLMQHFPDADGPKGIT--AQLQAFD 177 Query: 184 TLISHYKGIEASLASSSGILLGPNY---HFQLTRPGISLYGGTDKINKSHPMQT----VV 236 + G E +L++S+ IL RPGI LYG + + Sbjct: 178 AVTHDLPG-ERTLSNSAAILRHTGALAGRSDWVRPGIVLYGSAPDFPEHSASDWELQPTM 236 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +RII ++ AG+ V YG I V A GYADGYP Sbjct: 237 TLSSRIIGLQTLAAGDTVGYGSSFVAEGPMRIGVVACGYADGYPRHC-----------PT 285 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALAS 350 G + G ++G+++MDM D+T +G + ++G + +D+VA A+ Sbjct: 286 GTPVLVNGVRTRMVGRVSMDMITVDLTPVPRAGMGSEVTLWGRASKGGAMLPIDEVARAA 345 Query: 351 GTTNYDLLVRIGTRYA 366 GT Y+L+ + R Sbjct: 346 GTVGYELMCAVAPRVP 361 >gi|260436550|ref|ZP_05790520.1| alanine racemase [Synechococcus sp. WH 8109] gi|260414424|gb|EEX07720.1| alanine racemase [Synechococcus sp. WH 8109] Length = 376 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 110/381 (28%), Positives = 180/381 (47%), Gaps = 24/381 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ + +++ A++ N ++ L + AVVK + YG G E +A A G Sbjct: 5 LNPRQRAWVEVSPAAIRGNARALCQHLGPRTQLMAVVKADGYGHGAETVARAALQGGATS 64 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQ-LTFYSKLMS 117 V +++EG++LR +A + +L ++ P + L+P +SS+ + + Sbjct: 65 LGVATLQEGLELRRAGLEAPVLLLSNLNKPDDLRTCLHWGLMPTLSSLREAQLCNALAAD 124 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G L++DTG RLG SL E + + L I SHLACAD+P+ + S+ Sbjct: 125 SGRCFDVQLKIDTGMARLGCSLSEGHQTAAELESLEHLNLEGIYSHLACADEPNDALTSL 184 Query: 178 QLERFRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--P 231 Q ERF ++++ GI LA+S+G LL H L R G++LYG + S+ P Sbjct: 185 QQERFVSMLAALPQAGAGITRHLANSAGTLLNRELHHDLVRVGLALYGHAPASHLSNVIP 244 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q + AR+ LIR+ AG VSYG + R + +AV IGYADG +LSG Sbjct: 245 LQPALAVRARVSLIREVPAGTGVSYGHRFITERPTRLAVVGIGYADGVLRSLSGRI---- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + +P +G ITMD + D TD+ +E GD + + G D + + Sbjct: 301 -------HALHRNRQLPQVGAITMDQLLLDATDAAELEQGDIVTLLGQDGDLEVSPQSWS 353 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 G+ +++L R + Sbjct: 354 NHCGSIPWEILCGFKRRLPRV 374 >gi|254294303|ref|YP_003060326.1| alanine racemase [Hirschia baltica ATCC 49814] gi|254042834|gb|ACT59629.1| alanine racemase [Hirschia baltica ATCC 49814] Length = 370 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 187/365 (51%), Gaps = 22/365 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + L + NNW + LSG A T AVVK NAYGLG E++A LY AG + FFV ++E Sbjct: 17 AIVHLQNVVNNWKELARLSGAADTGAVVKANAYGLGAEQVASTLYEAGCRTFFVAHIDEA 76 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +++R A +F+ +GI + +++PV++S Q + G P AL Sbjct: 77 IQIRKTLGNLALVFIFHGIQADNVDDVIAHDIVPVLNSTDQ---VELWIRSGAPFPAALH 133 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG NRLGL L+E + ++ ++SHLACAD P +N+ QL F + + Sbjct: 134 VDTGMNRLGLQLKE---LANVKKRLPANRIGWVMSHLACADIPEHPMNARQLALFEKVAA 190 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR- 246 + E SL++++GI LG Y F LTRPGI LYGG + P VT A I+ I Sbjct: 191 IWPHAEKSLSNTAGICLGSKYTFDLTRPGIGLYGGYSRKGVFTPSHC-VTLSAPILSIIE 249 Query: 247 -KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 A + YG K+T +A A+GYADG +LS G F+ G Sbjct: 250 PDASNENTIGYGATSKVTNGQRLATIALGYADGALRSLSNS-----------GFVFVNGV 298 Query: 306 MVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 I+G+++MD+ DIT++ + V D ++ G ++ A A+ T +Y+LL +G R Sbjct: 299 PCSIVGRVSMDLITIDITNAPTRTTVLDRVEFLGQHASVEIQARAASTASYELLTSMGER 358 Query: 365 YAKFY 369 + Y Sbjct: 359 IPRVY 363 >gi|328951278|ref|YP_004368613.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884] gi|328451602|gb|AEB12503.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884] Length = 364 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 25/372 (6%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I L AL +N + L AV+K +AYG G IA L GV+ F V Sbjct: 2 RATWLEIHLDALAHNLRVIRARLQPGTGIIAVIKADAYGHGAVPIAHELARLGVERFAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +VEEG +LR Q + +L +HP + + LIP +S++ + + Sbjct: 62 TVEEGARLRQARIQHPVHLLGSLHPEEAAPALEHALIPTLSTL---EAARAVAAHRPGAT 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++ D+G R+G+ EAL ++ + +H A AD+ QLE F Sbjct: 119 VHVKADSGMGRVGV-PLEALRRFVEEVEAMGLEVEGVFTHFASADEDP-AATRRQLEAFL 176 Query: 184 TLISHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-KSHPMQTVVTAEAR 241 + + ++G + A+S+ +L P H RPGI+LYG + ++ +A Sbjct: 177 AVTAPWRGRYKLHAANSAALLRFPEAHLDFVRPGIALYGLPPGEGFAREGLWPILAWKAH 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 L+++ G+ + YGG R+ IA +GYADG+ LS G Sbjct: 237 PTLVKRVQPGQRIGYGGTYTAQREEWIATLPLGYADGFSRALSNR-----------GWVR 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD----VALASGTTNYDL 357 + P++G+++MD + + + ++ PD+ A GT Y+L Sbjct: 286 LGSTYCPVVGRVSMDQITVRLPG--PVGLDAVFEVITPDLDARTSLTGRAAQLGTIPYEL 343 Query: 358 LVRIGTRYAKFY 369 + R + Y Sbjct: 344 ATLLSPRLPRVY 355 >gi|167837061|ref|ZP_02463944.1| alanine racemase [Burkholderia thailandensis MSMB43] Length = 356 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + + ++ A+VK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLTVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDLDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD + Q+ F Sbjct: 121 QLKMNSGMNRLGYAPEKFRAAWERARACPGIGQITLMTHFSDADGGRG--VAEQMATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G SLA+S+ +L P+ HF RPGI LYG + + ++ +T + Sbjct: 179 GAQGIAGAR-SLANSAAVLWHPSAHFDWVRPGIVLYGASPSGHSADIADKGLKPAMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG I V A GYADGYP G Sbjct: 238 ELIAVQTLAKGQAVGYGSVFVAEETMRIGVVACGYADGYPRIA-----------PEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA T Y+L+ Sbjct: 287 VVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAACCMTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|85542701|gb|ABC71322.1| alanine racemase [Acetobacter aceti] Length = 368 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 183/365 (50%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L I+L+A+ N+ + G AAVVK +AYGLG ++AP L G + FFV V+EG Sbjct: 11 LTINLSAIAENYRYLVNKLGKTVCAAVVKADAYGLGVAQVAPILEQVGAKHFFVAHVDEG 70 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 + LR +P + VL+G P ++ NL PV++S+ Q+ A+ Sbjct: 71 LALRPYLSPHTSVTVLHGPRPDAAEVCVRNNLRPVLNSLKQVAVLRDLAAKMDKPLDVAI 130 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +R GLS + + +SL++SHLACAD P + N++Q ERF Sbjct: 131 QLDTGMSRFGLSEADIHKLMATPELLEGLSVSLVMSHLACADTPENAANAMQRERFENYA 190 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 SL++SSGI LG +HF L RPG +LYG + + +P++ VV + I+ IR Sbjct: 191 RMLPKAALSLSASSGIFLGQPFHFDLVRPGAALYGVAPQNDGVNPLKPVVGLQTHILQIR 250 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G+ V YG + T +A A+GY + + G + KGY Sbjct: 251 TLSKGDRVGYGLTWQATGPCRVATIAVGY-----------ADGFARAGAAAGCAWYKGYR 299 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PILG+I+MD D++ +E +++ +D VA A GT Y++L +G R Sbjct: 300 LPILGRISMDSMTVDLSAVPEGLLEEDSMVELLNESYGVDAVAKAEGTIGYEVLTSLGRR 359 Query: 365 YAKFY 369 Y + Y Sbjct: 360 YHRVY 364 >gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum seropedicae SmR1] gi|300076027|gb|ADJ65426.1| alanine racemase protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 120/377 (31%), Positives = 185/377 (49%), Gaps = 19/377 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + L IDL A+ NW +++A AR AVVK +AYGLG + AL +AG ++F Sbjct: 1 MSTQPTASLTIDLPAIVANWKTLSARVAPARCGAVVKADAYGLGATMVVRALLDAGCREF 60 Query: 61 FVTSVEEGVKLRLYTPQ-----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 FV V EGV L+ AR+ +L G PG E + L PV++S+ Q+ + Sbjct: 61 FVALVSEGVSLKQTLADRWPKGARLHILNGTLPGDELLCLHYGLTPVLNSLEQVRSWQGY 120 Query: 116 MSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ALQVDTG RLGL+ E T + + ++SHL A++ ++ + Sbjct: 121 ARQLDFPLAAALQVDTGMARLGLAPAEVAQLTESRAGLAGIAPTFLMSHLVSAEETANPL 180 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 N QLERF + H+ I LA+SSGI LG ++HF RPG +LYG +PM+ Sbjct: 181 NQHQLERFVAIRRHWPEIAGCLANSSGIFLGADFHFGCVRPGAALYGVHPGGAGPNPMRP 240 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ +A +I R+ AGE V Y + +R + + A+GYADGY + S Sbjct: 241 VLRLQAPLIQWRELQAGESVGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRL--- 297 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI--EVGDYIQIFGPDIKLDDVALASGT 352 +G P++G+++MD D++ G + ++ +A+ +GT Sbjct: 298 --------EGVEAPLIGRVSMDSITVDLSAIDPARLRPGLLFDVLDAQQDINALAVQAGT 349 Query: 353 TNYDLLVRIGTRYAKFY 369 Y++L + RY + Y Sbjct: 350 NAYEILTSLRHRYRRHY 366 >gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] Length = 825 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 150/373 (40%), Gaps = 24/373 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+++L A+ N + A + + ++K + YG G +IA L + V V Sbjct: 464 TTLEVNLNAVVANLNYYRAFMKPETKLVCMIKADGYGAGAVEIAKTLQDHRVDYLAVAVA 523 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 +EGV LR + I ++ K +FD +L P + S L K P Sbjct: 524 DEGVTLRKNGITSNIMIMNPEMTA-FKTMFDYDLEPEVYSFRLLDALIKAAEKEGVTGFP 582 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHVNSVQLER 181 +++DTG +R+G + ++ + + + DD ++ Q E Sbjct: 583 VHIKLDTGMHRMGFDPENDMEELIGKLKHQNAIIPRSVFSHFVGSDDDSFDDFSAHQFEL 642 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F I + +S+GI P + R G+ LYG + NK+ + Sbjct: 643 FDKGSKQLQAAFDHKILRHICNSAGIEHFPERQLDMCRLGLGLYGINSRNNKTINCVS-- 700 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + I+ + AG+ V Y + L RDS+IA IGYADG L Sbjct: 701 TLKTTILQMHNVKAGDSVGYSRKTILDRDSVIAAIPIGYADGLNRRLGNRH--------- 751 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 + G +G I MD+ M D+TD + GD ++IFG + + ++ T Y+ Sbjct: 752 -AYCLVNGQKAEYVGNICMDVAMIDVTDIP-CKEGDSVEIFGEHLPVQTLSDILETIPYE 809 Query: 357 LLVRIGTRYAKFY 369 +L I R + Y Sbjct: 810 VLTTISNRVKRVY 822 >gi|229816616|ref|ZP_04446914.1| hypothetical protein COLINT_03673 [Collinsella intestinalis DSM 13280] gi|229807822|gb|EEP43626.1| hypothetical protein COLINT_03673 [Collinsella intestinalis DSM 13280] Length = 383 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 165/384 (42%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +ID AL+ N + +L R VVK +AYG G A ++ AG F V Sbjct: 10 RWAWAEIDTGALRRNTRAFKSLVGPRQRLCCVVKADAYGHGVANCAKVMHAAGADMFAVA 69 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSH 122 +V EGV LR + I +L G + + +++P + S + + + G Sbjct: 70 TVLEGVALREAGQKLPILLLSEPPQGAIDTLLEYDIMPSVYSPEFAWAYGERAAALGRVG 129 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 Y + ++TG NR+G+ E +DF + + +H A ADDP + +Q +RF Sbjct: 130 KYHMAINTGMNRIGVHCTEVVDFRRSVDFHAGLECDGTFTHFATADDPDGWDHQLQCKRF 189 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTV 235 I + + ++ G +L P HF + R GI LYG + P++ V Sbjct: 190 TEAISALREAGFDPGIVHCDNTPGSVLNPAMHFDMIRAGIGLYGLQPCERTASVLPLEPV 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ AR+ GE V YG ++ R + IGYADG P LS Sbjct: 250 MSIRARVTHACYPAMGEGVGYGFTYRVPRTRVEVCTLPIGYADGLPRVLSNRMD------ 303 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-----SIEVGDYIQIFGPD----IKLDD 345 +G + +G I MD M ++++ EVGD + I G D I LD+ Sbjct: 304 -----VLFRGERIRQVGNICMDQCMVAVSETSLRPTQEAEVGDLMTIVGRDGDAQITLDE 358 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A A GT NY+L G R K Y Sbjct: 359 LARACGTINYELACGFGMRLEKIY 382 >gi|220934104|ref|YP_002513003.1| alanine racemase [Thioalkalivibrio sp. HL-EbGR7] gi|254802394|sp|B8GNS7|ALR_THISH RecName: Full=Alanine racemase gi|219995414|gb|ACL72016.1| alanine racemase [Thioalkalivibrio sp. HL-EbGR7] Length = 361 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 20/372 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +IDL AL++N + + +R AV+K AYG G +A AL ++ Sbjct: 2 RRAARARIDLNALRHNLRTARRAAPRSRVMAVIKAEAYGHGMLAVARALAAQADAF-AIS 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT--NLIPVISSVPQLTFYSKLMSCGVS 121 ++E LR + VL G + I ++ PVI S QL + Sbjct: 61 CIDEARVLREAGVTLPLVVLQGFRDAAQLIEVARLGDVQPVIHSTGQLDVLES-AALPAP 119 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-ISHLACADDPSSHVNSVQLE 180 L++DTG +RLGL EA + ++HLACAD+P +QL+ Sbjct: 120 LRVWLKLDTGMHRLGLPPGEAAVLQNRIAALPQVAGVPGLMTHLACADEPERPETGIQLQ 179 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237 F + G E S+A+S+ +L P RPGI LYG + + +S +Q V+T Sbjct: 180 VFDAATADLPG-ERSIANSAAVLRTPAACRDWVRPGIMLYGASPLAGETAQSLDLQPVMT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A ++ +++ AG+ V YGG +AV A+GY DGYP G Sbjct: 239 VSAPVVAVKRLAAGDAVGYGGGYVCQSPRTMAVVAMGYGDGYPRHA-----------PSG 287 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + G ++G+++MDM D+T+ + GD + ++G + +D++A A+GT +Y+L Sbjct: 288 TPVRVHGRRCALMGRVSMDMLCVDVTEVPGVAPGDDVTLWGEGLPVDEIAAAAGTISYEL 347 Query: 358 LVRIGTRYAKFY 369 L +G R Y Sbjct: 348 LCSVGGRLRLEY 359 >gi|186476117|ref|YP_001857587.1| alanine racemase [Burkholderia phymatum STM815] gi|184192576|gb|ACC70541.1| alanine racemase [Burkholderia phymatum STM815] Length = 363 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 145/348 (41%), Gaps = 22/348 (6%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 + ++ AVVK NAYG G + P L F + +EE VKLR I +L Sbjct: 29 RRYAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLDLEEAVKLRELGWAGPILLL 86 Query: 84 YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142 G P +I +L + S QL L++++G NRLG + ++ Sbjct: 87 EGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVNIQLKMNSGMNRLGYTPEKF 145 Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202 + + +++H + AD S Q+E F G SLA+S+ Sbjct: 146 RAAWERARACQGVGQITLMTHFSDADSERGI--SHQMEAFERGAQGIAGAR-SLANSAAT 202 Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258 L P HF RPG+ LYG + K +Q +T + +I ++ G+ + YG Sbjct: 203 LWYPEAHFDWVRPGVMLYGASPSGVSSAIKDTGLQPAMTLASELIAVQTLAQGQTIGYGS 262 Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318 I V A GYADGYP G + G I+G+++MDM Sbjct: 263 TFTAREGMRIGVVACGYADGYPR-----------VAPEGTPIIVDGIRTRIVGRVSMDMI 311 Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 D+T VG ++++G + +DDVA + GT Y+L+ + R Sbjct: 312 TVDLTPCPQANVGSRVELWGAQLPVDDVAQSCGTIGYELVCAVAPRVP 359 >gi|322373681|ref|ZP_08048217.1| alanine racemase [Streptococcus sp. C150] gi|321278723|gb|EFX55792.1| alanine racemase [Streptococcus sp. C150] Length = 367 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 156/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + K+DL+A+ N + + +T AVVK NAYG G +A + V Sbjct: 1 MISSLHRPTLAKVDLSAISENIEQVVSHIPKKVKTFAVVKANAYGHGAVAVAK-QVSERV 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V++++E ++LR + I +L + P + + N+ ++S+ L Sbjct: 60 DGFCVSNLDEALELRQAGLEQPILILGVVLPDEVPLAIQENITLTVASLEWLEMTKNQGL 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 ++VD+G R+G+ Q D + I +H A AD+ Sbjct: 120 DLTGLTCHIKVDSGMGRIGVRSQGDADSLIAGLKTLGADVEGIFTHFATADEADDSKFKR 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPM 232 QL F L+ + + +S+ + F R G+ +YG +N + + Sbjct: 180 QLAFFTNLVENLADRPRLVHASNSATSIWHAETVFNAVRLGVVIYGLNPSGSALNLPYKI 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E ++ ++ AG+ V YG T D +I IGYADG+ L G Sbjct: 240 RPALSLETALVHVKTLPAGQDVGYGATYTTTTDEVIGTIPIGYADGWTRDLQGF------ 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G PI+G+++MD + + G + + G + I +VA Sbjct: 294 ------HVIVDGQFCPIVGRVSMDQITIRLPKVYPL--GTPVTLIGENGRASITATEVAE 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 346 KRGTINYEVLCLLSDRVPRSY 366 >gi|302379690|ref|ZP_07268175.1| alanine racemase [Finegoldia magna ACS-171-V-Col3] gi|302312597|gb|EFK94593.1| alanine racemase [Finegoldia magna ACS-171-V-Col3] Length = 391 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 154/379 (40%), Gaps = 28/379 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LK+DL LK+N+ + +S + AVVK NAYG G I L G+ F V+++ E Sbjct: 8 LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127 ++LR I +L I ++ N+ + + + ++ Sbjct: 68 LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAKSLNKICKVHIK 127 Query: 128 VDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +DTG RLG + L+ + L I SH + AD Q + Sbjct: 128 IDTGMTRLGFQVRLDHDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187 Query: 184 TLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTV 235 + + + ++ + Y + R GI LYG N ++ + Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIHGYFLDMIRCGIGLYGYHASDYVTENSRLNLEEI 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + +I+ G + YG ++++A A IGYADGYPL LS Sbjct: 248 SSLYTTVSMIKTVPKGTDIGYGRTFTTNSETIVATATIGYADGYPLELSN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 I G ILGK+ MD M D+T ++VGD + +FG D I L D+A + Sbjct: 298 -KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKDDMGEISLYDLAEMAN 356 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T Y+LL R+ R + YT Sbjct: 357 TNVYELLCRVTMRIPRIYT 375 >gi|26247504|ref|NP_753544.1| alanine racemase [Escherichia coli CFT073] gi|227886397|ref|ZP_04004202.1| alanine racemase [Escherichia coli 83972] gi|300971950|ref|ZP_07171738.1| alanine racemase [Escherichia coli MS 45-1] gi|301046830|ref|ZP_07193947.1| alanine racemase [Escherichia coli MS 185-1] gi|306813916|ref|ZP_07448089.1| alanine racemase [Escherichia coli NC101] gi|27923729|sp|P59237|ALR2_ECOL6 RecName: Full=Alanine racemase, catabolic gi|26107905|gb|AAN80104.1|AE016759_378 Alanine racemase, catabolic [Escherichia coli CFT073] gi|227836601|gb|EEJ47067.1| alanine racemase [Escherichia coli 83972] gi|300301198|gb|EFJ57583.1| alanine racemase [Escherichia coli MS 185-1] gi|300411075|gb|EFJ94613.1| alanine racemase [Escherichia coli MS 45-1] gi|305852553|gb|EFM53001.1| alanine racemase [Escherichia coli NC101] gi|307553240|gb|ADN46015.1| alanine racemase [Escherichia coli ABU 83972] gi|315290759|gb|EFU50131.1| alanine racemase [Escherichia coli MS 153-1] gi|324006029|gb|EGB75248.1| alanine racemase [Escherichia coli MS 57-2] Length = 356 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPYARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P +++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SLA+S+ L HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLANSAATLWHQEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 286 VLVDGVLTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALALRVP 352 >gi|210631730|ref|ZP_03296972.1| hypothetical protein COLSTE_00857 [Collinsella stercoris DSM 13279] gi|210159850|gb|EEA90821.1| hypothetical protein COLSTE_00857 [Collinsella stercoris DSM 13279] Length = 383 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 164/384 (42%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +I+ AL+ N + +L G R VVK +AYG G A ++ AG F V Sbjct: 10 RWAWAEINTGALRRNTRAFKSLIGARQRLCCVVKADAYGHGAASCAKVMHAAGADMFAVA 69 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSH 122 +V EGV LR + I +L G + + +++P + S + + S G Sbjct: 70 TVLEGVALREAGQKLPILLLSEPPAGAIDALLEFDIMPSVYSPEFAWAYGERAASLGKVG 129 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 Y + ++TG NR+G+ E +DF + Q +H A AD+P + +Q +RF Sbjct: 130 KYHMAINTGMNRIGVHYTEVVDFRRSVDFHAGLQCDGTFTHFATADEPDGWDHQLQCKRF 189 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTV 235 ++ + ++ G +L P HF + R GI LYG + P++ V Sbjct: 190 SEAVACLRDAGFDPGIVHCDNTPGSILNPAMHFDMIRAGIGLYGLQPCERTRAVLPLEPV 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ +AR+ GE V YG ++ R I IGYADG P LS Sbjct: 250 MSIKARVTHTCHPAMGEGVGYGFTYRVPRTRVEICTLPIGYADGLPRVLSNRM------- 302 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITD-----SLSIEVGDYIQIFGPD----IKLDD 345 + G + +G I MD M I++ EVGD + I G D I LD+ Sbjct: 303 ----EVLFNGRRMRQVGNICMDQCMVAISENPMHPVPEAEVGDLMTIVGRDGDAQITLDE 358 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY+L G R K Y Sbjct: 359 LASMCQTINYELACGFGMRLEKIY 382 >gi|290579829|ref|YP_003484221.1| putative alanine racemase [Streptococcus mutans NN2025] gi|254996728|dbj|BAH87329.1| putative alanine racemase [Streptococcus mutans NN2025] Length = 371 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + L +K N + A +T AVVK NAYG G ++A A+ V F V Sbjct: 6 HRPTTALVHLDRIKFNIEQVQHHIPKAAKTFAVVKANAYGHGAVQVAKAIQKQ-VDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + P + + N+ ++ + Sbjct: 65 SNLDEALELRQAGLNDFILILGVLLPEEVALAKKENITITVADLDWFDKVQTENIDLAGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VD+G R+G+ + K ++ I +H A AD+ S+ S QLE F Sbjct: 125 SVHVKVDSGMGRIGVRSTAEANQLIAGLQKAGATVNGIFTHFATADEASTVKFSQQLEMF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 TLIS ++ +S+ + + R GI +YG N + ++ + Sbjct: 185 TTLISQLDYKPQTVHASNSATSIWHSDTVMNAVRLGIVMYGLNPSGNALELPYEVKPALE 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG+ V YG ++ +I +GYADG+ L G Sbjct: 245 LTSALVQVKEVQAGDTVGYGATYTASQAEIIGTVPVGYADGWTRDLQGF----------- 293 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G+ I+G+++MD + + + G + + G D I DVA T Sbjct: 294 -HVLVNGHYCEIVGRVSMDQITIRLPKAYPL--GTKVTLIGQDGHETISATDVAEKRETI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L I R + Y Sbjct: 351 NYEVLCLISDRVPRKY 366 >gi|50085519|ref|YP_047029.1| alanine racemase 1, biosynthetic [Acinetobacter sp. ADP1] gi|49531495|emb|CAG69207.1| alanine racemase 1, biosynthetic [Acinetobacter sp. ADP1] Length = 358 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 97/369 (26%), Positives = 168/369 (45%), Gaps = 22/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ID AL+ N + + L+ +A+ ++VK NAYG G + AL F V Sbjct: 2 RHATVYIDRQALRYNLNRVKQLAPHAKIVSMVKANAYGHGIKDCLAALET--TDSFGVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFYSKLMSCGV--S 121 + E +++R I ++ G+ E I + NL V+ Q+ + + + + Sbjct: 60 LAEALEIRDEGYTQSITLIEGVFSQDEMPIVIEKNLECVVHHAQQIKWLLEYKTQYITQK 119 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++++G NRLG E ++ ++ ++ H A AD P +N Q+++ Sbjct: 120 LKVWIKLNSGMNRLGFKPDEIIEVIQQLQHQGFHC--VLTMHFANADVPDHPMNQRQIDQ 177 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTVVTA 238 T+ + IE S +S+ I P HF RPGI LYG + ++ + V+ Sbjct: 178 LITIKTACAPIEISCCNSAAIFNWPELHFDYVRPGIMLYGASPFAEQNIHQLDLKPVMRF 237 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A I+ + AGE + YG D +A+ +IGY DGYP Sbjct: 238 TAHIMALNTIKAGEHIGYGSLYTAKTDMTVAIVSIGYGDGYPRAF-----------IAQN 286 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + + PI+G+++MDM D+TD I + I+++G +D+VA A+GT Y+LL Sbjct: 287 FVALGQQLFPIVGRVSMDMLAIDVTD-RDIAIDTEIELWGHTRLVDEVASANGTIGYELL 345 Query: 359 VRIGTRYAK 367 R+ R + Sbjct: 346 CRLSNRPIR 354 >gi|145225510|ref|YP_001136188.1| alanine racemase [Mycobacterium gilvum PYR-GCK] gi|145217996|gb|ABP47400.1| alanine racemase [Mycobacterium gilvum PYR-GCK] Length = 383 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 152/384 (39%), Gaps = 29/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M++ IDL A+ +N + +G A AVVK + YG G +A A AG + Sbjct: 9 MNT---PSAVIDLDAIAHNVGVLRDRAGRAAVMAVVKADGYGHGATAVARAALAAGATNL 65 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119 V +++E + LR A + ++ +SS Q + G Sbjct: 66 GVATLDEALSLRRDGVTAPVLSWLHPPGTDFTPAVQADIEVALSSRRQLDDLLRAVARTG 125 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNS 176 + ++ DTG +R G+S + + + SHLA D P N Sbjct: 126 RTATVTVKADTGLSRNGVSPADHPGLVSALARAQTDGAVTVHGLMSHLAHGDVPDHPFND 185 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SH 230 Q R + S + L +S L P+ F + RPGI++YG T + Sbjct: 186 EQARRLTEMASEARSAGVAYDVVHLCNSPAALTRPDLAFDMVRPGIAVYGQTPIPERGDM 245 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ +T + + L+R AG+ VSYG RD+ +A+ GYADG LS Sbjct: 246 GLRPAMTVKCPVALVRSVRAGDGVSYGHTWLAPRDTTLALIPAGYADGVFRALSNRF--- 302 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDD 345 + I G P +G++ MD + D+ + GD +FGP + D Sbjct: 303 --------EVTINGRRYPNVGRVCMDQFVVDLGPGPVDVAEGDDAILFGPGDDGEPTAQD 354 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A GT NY+++ R + Y Sbjct: 355 WADLLGTINYEVVTSPRGRIVRGY 378 >gi|229489364|ref|ZP_04383227.1| alanine racemase [Rhodococcus erythropolis SK121] gi|229323461|gb|EEN89219.1| alanine racemase [Rhodococcus erythropolis SK121] Length = 400 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 159/378 (42%), Gaps = 26/378 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +DL A+ +N + +G+A AV+K + Y G +A +AG ++ VT++ Sbjct: 28 TEAVVDLDAIAHNVRVLREFAGDAALMAVIKADGYNHGAVAVARTALSAGARELGVTTIA 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E + LR A + +++ +SS L G Sbjct: 88 EALVLREAGITAPVLAWLHGVDADFASAIRSDVEIGVSSPRHLAAVVGAARVLGQQATVT 147 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERF 182 L+VDTG NR G+S E + + + SHLA +D+P V +Q +R Sbjct: 148 LKVDTGLNRNGVSRTEWPQMLDDLATARDEGTIRLRGVFSHLAHSDEPHHDVIDMQKQRL 207 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 ++ + L++S+ + P+ F + RPGI++YG + ++ + Sbjct: 208 IDAVADVRARGFDPEVVHLSNSAATVTRPDLRFDMVRPGIAIYGLSPVPELGDFGLRPAM 267 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A++IL++K AGE VSYG Q D+ +A+ +GYADG +LSG Sbjct: 268 TLRAKVILVKKVAAGEGVSYGHQWVAPHDTTLALLPVGYADGLSRSLSGKF--------- 318 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVALASG 351 + + G +G+I MD + D+ D + GD FG + A Sbjct: 319 --EVQLGGKRRQAVGRICMDQVLVDLGPDGDGVREGDTAIFFGNGDHGEPNAQAWADVLD 376 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+++ I R + Y Sbjct: 377 TIHYEVVTGIRGRTVRTY 394 >gi|303234171|ref|ZP_07320817.1| alanine racemase [Finegoldia magna BVS033A4] gi|302494712|gb|EFL54472.1| alanine racemase [Finegoldia magna BVS033A4] Length = 391 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 154/379 (40%), Gaps = 28/379 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LK+DL LK+N+ + +S + AVVK NAYG G I L G+ F V+++ E Sbjct: 8 LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127 ++LR I +L I ++ N+ + + + ++ Sbjct: 68 LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAKSLNKICKVHIK 127 Query: 128 VDTGFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +DTG RLG + L+ + L I SH + AD Q + Sbjct: 128 IDTGMTRLGFQVRLDHDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187 Query: 184 TLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTV 235 + + + ++ + Y + R GI LYG N ++ + Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIHGYFLDMIRCGIGLYGYHASDYVRENSRLNLEEI 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + +I+ G + YG ++++A A IGYADGYPL LS Sbjct: 248 SSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYPLELSN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 I G ILGK+ MD M D+T ++VGD + +FG D I L ++A + Sbjct: 298 -KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKDDMGEISLYELAEMAN 356 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T Y+LL R+ R + YT Sbjct: 357 TNVYELLCRVTMRIPRIYT 375 >gi|149021206|ref|ZP_01835452.1| alanine racemase [Streptococcus pneumoniae SP23-BS72] gi|147930307|gb|EDK81291.1| alanine racemase [Streptococcus pneumoniae SP23-BS72] Length = 367 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 155/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQD-DVNGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G ++ + + ++ I +H A AD+ S + QLERF Sbjct: 125 TVHLKIDSGMGRIGFREASEVEQAQDLLQQHGVRVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ I+ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHIKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKPYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|160872424|ref|ZP_02062556.1| alanine racemase [Rickettsiella grylli] gi|159121223|gb|EDP46561.1| alanine racemase [Rickettsiella grylli] Length = 367 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 17/363 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++++L AL +N + ++ ++ A+VK NAYG G IA AL + + F V+ Sbjct: 2 SRPFTVELNLGALCHNVKRVRDIAPRSKLLAMVKANAYGHGLLPIAKALTD--IDGFGVS 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 EE + LR + RI ++ GI E + + + + Sbjct: 60 CSEEALYLRQAGLKQRIVLMEGIFSQDEISLLTDYELDTVIHDHHQLYLLSKHPLPRKVN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NRLG S + + +++H + AD+ + Q++ F Sbjct: 120 VWLKINTGMNRLGFSPNDFDAVLDKLSRHAWLNIVCVMTHFSNADNIRNTTTKNQIKLFE 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 + Y SLA+S+ IL P+ H RPG+ LYG + N + ++ V+T ++ Sbjct: 180 QTLKGY-PFPTSLANSAAILASPHVHADWVRPGLMLYGVSPFSNSSGAHYGLKPVMTLKS 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I++ G+ V Y G + + AIGY DGYP S G Sbjct: 239 EIISIQQLKKGDKVGYRGTWISPQSLRVGTVAIGYGDGYP-----------YSAKSGTPI 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G ++MDM ++ + L ++GD + ++G + ++ +A + + Y+LL Sbjct: 288 LVNGKLTELIGHVSMDMLTVNLLNQLETKIGDSVVLWGAGLPVEQIAKRTSSFCYELLCG 347 Query: 361 IGT 363 I Sbjct: 348 INR 350 >gi|295425675|ref|ZP_06818362.1| alanine racemase [Lactobacillus amylolyticus DSM 11664] gi|295064691|gb|EFG55612.1| alanine racemase [Lactobacillus amylolyticus DSM 11664] Length = 376 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 147/382 (38%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++++L A+K N + M L + AVVK N YG G +A AG F V Sbjct: 6 HRPAVVRVNLGAIKQNIDNEMKHLRPGQKLFAVVKANGYGHGAVPVAKVAEKAGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++EG++LR I VL + P I ++ + ++ L K + + Sbjct: 66 AILDEGLELRKADIVKPILVLGVVSPEYAPIAAVNDISLTVPNLKWLKQAEKYLKKENLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 L +D+G R+G S + + K + +H A AD Q+ Sbjct: 126 LKIHLGIDSGMGRIGFSEDDEFIAANKFLEKNDSFFVEGMFAHFASADSSDDSYFKKQVA 185 Query: 181 RFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F+ + +A+++ + + H L R GI +YG N P Sbjct: 186 KFKHMQDLLTVHPKWIHVANTAASIFDKDIHSDLVRFGIGIYGLNPSSNPDSPDLKADIA 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ + + ++ G+ V YG D++I +GYADG+ G Sbjct: 246 LKPALSFVSELTHVKTIHKGDGVGYGSTFVADHDTIIGTVPVGYADGWIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVA 347 K + PI+G++ MD M ++ + + + G + + + + A Sbjct: 301 -------KVKVGDQYCPIVGRVCMDQFMVEMPEKMPV--GTKVVLISDNPNDPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLSDRLPREY 373 >gi|315445863|ref|YP_004078742.1| alanine racemase [Mycobacterium sp. Spyr1] gi|315264166|gb|ADU00908.1| alanine racemase [Mycobacterium sp. Spyr1] Length = 375 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 152/384 (39%), Gaps = 29/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M++ IDL A+ +N + +G A AVVK + YG G +A A AG + Sbjct: 1 MNT---PSAVIDLDAIAHNVGVLRDRAGRAAVMAVVKADGYGHGATAVARAALAAGATNL 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119 V +++E + LR A + ++ +SS Q + G Sbjct: 58 GVATLDEALSLRRDGVTAPVLSWLHPPGTDFTPAVQADIEVALSSRRQLDDLLRAVARTG 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLII---SHLACADDPSSHVNS 176 + ++ DTG +R G+S + + + SHLA D P N Sbjct: 118 RTATVTVKADTGLSRNGVSPADHPGLVSALARAQTDGAVTVHGLMSHLAHGDVPDHPFND 177 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SH 230 Q R + S + L +S L P+ F + RPGI++YG T + Sbjct: 178 EQARRLTEMASEARSAGVAYDVVHLCNSPAALTRPDLAFDMVRPGIAVYGQTPIPERGDM 237 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ +T + + L+R AG+ VSYG RD+ +A+ GYADG LS Sbjct: 238 GLRPAMTVKCPVALVRSVRAGDGVSYGHTWLAPRDTTLALIPAGYADGVFRALSNRF--- 294 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDD 345 + I G P +G++ MD + D+ + GD +FGP + D Sbjct: 295 --------EVTINGRRYPNVGRVCMDQFVVDLGPGPVDVAEGDDAILFGPGDDGEPTAQD 346 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A GT NY+++ R + Y Sbjct: 347 WADLLGTINYEVVTSPRGRIVRGY 370 >gi|191639471|ref|YP_001988637.1| Alanine racemase [Lactobacillus casei BL23] gi|226711049|sp|B3WAR0|ALR_LACCB RecName: Full=Alanine racemase gi|190713773|emb|CAQ67779.1| Alanine racemase [Lactobacillus casei BL23] gi|327383565|gb|AEA55041.1| Possible alanine racemase [Lactobacillus casei LC2W] gi|327386757|gb|AEA58231.1| Possible alanine racemase [Lactobacillus casei BD-II] Length = 378 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 148/379 (39%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPATVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SS L ++ P Sbjct: 67 ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQ 178 L +DTG R+G + +AL Q + +H A AD P Q Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 + +F L++ + +S+ L + + R G+++YG + P+ Sbjct: 187 VNKFNHLVNLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + D I IGYADG+ L G Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + R + Sbjct: 353 YSKTIHYEIACNLTPRLKR 371 >gi|170780960|ref|YP_001709292.1| putative alanine racemase fusion protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155528|emb|CAQ00640.1| putative alanine racemase fusion protein [Clavibacter michiganensis subsp. sepedonicus] Length = 578 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 163/374 (43%), Gaps = 25/374 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R IDL A+++N ++ AL+ ART VK +AYG G ++A A +G + V V Sbjct: 19 RAVIDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALESGAESLAVLDVAS 78 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 V+LR AR+ ++ + + +S++ +L + + G+ L Sbjct: 79 AVELRRAGIDARLLAWLHGVDTDFRVAVEEEIDLGVSALWELKRIAAAGRATGIRARVHL 138 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 + DTG +R G + + D + + + + D S + L RFR + Sbjct: 139 KADTGLSRNGATPELWPDLVRAAVAADSAGELTLHALWSHLADASPEDDDAALARFREAV 198 Query: 187 S-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238 + +E LA+SS + P F + R GI++YG + + + + +T Sbjct: 199 RVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRSGRDLGLIPAMTL 258 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 EA ++ +++ AG VSYG + S + + +GYADG P + S Sbjct: 259 EADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRIAAPRAS---------- 308 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 + G P+ G+I MD + D+ D +EVGD I GP + ++ A + T Sbjct: 309 -VLLNGRRFPVAGRIAMDQLVLDVGDLP-VEVGDTAVILGPGDRGEPTAEEWAGWAETIG 366 Query: 355 YDLLVRIGTRYAKF 368 +++ R+G R + Sbjct: 367 DEIVTRVGPRVDRV 380 >gi|300742014|ref|ZP_07072035.1| alanine racemase [Rothia dentocariosa M567] gi|300381199|gb|EFJ77761.1| alanine racemase [Rothia dentocariosa M567] Length = 437 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 150/387 (38%), Gaps = 28/387 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL AL++N + + G + AVVK +AYG G +A ++ AG V V E Sbjct: 22 AIIDLNALEHNTRVLKDMIGERKLIAVVKADAYGHGAYPVARSVLEAGADILGVVHVTEA 81 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR A I + ++I S L+V Sbjct: 82 LELRSEGITAPIIAWLHTPQTDFDEALEADIILGASGWDLEAIAEAANRTKKRARVHLKV 141 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G + ++ + + L ++ I SHLA AD+P + Q+ R Sbjct: 142 DTGLGRNGSTFEDWPALVARALELEAAGLVRIEGIFSHLAVADEPERPETARQIARLNEF 201 Query: 186 --ISHYKGIEASLASSSG-----------ILLGPNYHFQLTRPGISLYGGTDKIN---KS 229 ++ G+ L + R GI+LYG + K Sbjct: 202 ATVARSAGLTPELVHLANSPGTITGASPLYNTNEAVLADAVRCGIALYGLSPLAGVSSKD 261 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T + +++ AG+ VSYG + + + + + +GYADG P G Sbjct: 262 LNLRPVMTLGTHVCNVKEVPAGQGVSYGLRYSTDKPTTLVLIPLGYADGVPRIAEGAPVR 321 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV-----GDYIQIF--GPDIK 342 P + ++G+I MD + D+ + + G +F G + Sbjct: 322 IYPRADAANPV--EPRTYRVVGRIAMDQLVVDLEEPGLADPARGILGGSAVLFGSGDNPP 379 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +++ A A+ T NY+++ RI R + Y Sbjct: 380 VEEWAAAAQTINYEIVTRISPRVIRIY 406 >gi|315224260|ref|ZP_07866097.1| alanine racemase [Capnocytophaga ochracea F0287] gi|314945763|gb|EFS97775.1| alanine racemase [Capnocytophaga ochracea F0287] Length = 369 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 148/379 (39%), Gaps = 23/379 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + E + L+I+LTAL+ N + L VVK ++YG IA L G Sbjct: 1 MKTEETV-LEINLTALEKNVLYLKSRLKPTTLFLGVVKASSYGNNSVPIALHLQKKGLAN 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V EG LR I VL+ P I L P + S + + Sbjct: 60 YFAVAYTSEGKALREAGITLPILVLHP-QPINFDDIVKYKLEPTLYSQRITKLFLEYAEK 118 Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVN 175 +P L+ +TG NRLG L E N + SHLA ++D + Sbjct: 119 HHLVKYPVHLKCNTGLNRLGFDLNEIDQELTLLKNNTTVTVKTAYSHLAASEDMNEKEFT 178 Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q++ F + ++SGIL + F + R GI +YG + Sbjct: 179 ENQIKTFIAFQEKINKTFSHKVIYHQCNTSGILNYAHAQFDMVRCGIGMYGFANDAQLQQ 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + ++T ++ I I G+ + Y + A +G+ADG Sbjct: 239 YLTPIMTLKSVISQIHTLQVGDSLGYNRGYIADHITKTATIPVGHADGINRIYG------ 292 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 G FI G PI+G + MDM + D+T+ E G + +F D + +A ++ Sbjct: 293 ----KGKGFVFINGKKAPIIGNVCMDMILVDVTNIP-CEEGGEVIVFDKDHTAETLAESA 347 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+L+ + R + Y Sbjct: 348 GTISYELITSMAHRIKRVY 366 >gi|116495991|ref|YP_807725.1| alanine racemase [Lactobacillus casei ATCC 334] gi|122262609|sp|Q034T9|ALR_LACC3 RecName: Full=Alanine racemase gi|116106141|gb|ABJ71283.1| alanine racemase [Lactobacillus casei ATCC 334] Length = 378 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPATVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SS L ++ P Sbjct: 67 ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQ 178 L +DTG R+G + +AL Q + +H A AD P Q Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 +++F L++ + +S+ L + + R G+++YG + P+ Sbjct: 187 VDKFNHLVNLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ ++ + ++ AG+ +SYG + D I IGYADG+ L G Sbjct: 247 EPALSLKSELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + R + Sbjct: 353 YSKTIHYEIACNLTPRLKR 371 >gi|83720249|ref|YP_442531.1| alanine racemase [Burkholderia thailandensis E264] gi|167581458|ref|ZP_02374332.1| alanine racemase [Burkholderia thailandensis TXDOH] gi|167619567|ref|ZP_02388198.1| alanine racemase [Burkholderia thailandensis Bt4] gi|257138740|ref|ZP_05587002.1| alanine racemase [Burkholderia thailandensis E264] gi|83654074|gb|ABC38137.1| alanine racemase [Burkholderia thailandensis E264] Length = 356 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 149/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + + ++ A+VK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLTVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD + Q+ F Sbjct: 121 QLKMNSGMNRLGYAPEKFRAAWERARACPGIGQITLMTHFSDADGERG--VAEQMATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 G SLA+S+ +L P+ HF RPGI LYG + + +Q +T + Sbjct: 179 GAQGIAGAR-SLANSAAVLWHPSAHFDWVRPGIMLYGASPSGHSADIAGKGLQPTMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG I V A GYADGYP G Sbjct: 238 ELIAVQTLAKGQAVGYGSVFVAEDTMRIGVVACGYADGYPRIA-----------PEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA T Y+L+ Sbjct: 287 VVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|257785044|ref|YP_003180261.1| alanine racemase [Atopobium parvulum DSM 20469] gi|257473551|gb|ACV51670.1| alanine racemase [Atopobium parvulum DSM 20469] Length = 384 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 166/388 (42%), Gaps = 33/388 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + ++IDL+A+++N + L+ + VVK +AYG G + A A+ + G F V Sbjct: 7 DRWAWIEIDLSAVRHNVKAFKAQLNRGVKLMCVVKADAYGHGAAQCAKAMQSVGADQFAV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVS 121 +V+EGV+LR ++ I VL + +++P + +V L + + Sbjct: 67 ATVDEGVELRCSGIESPILVLSEPPVTSIPDLVRFDIMPSVYTVDFALAYGEASAAANKV 126 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 Y L +DTG R+G+ ++ L+ + + + + +H A AD + +Q+ R Sbjct: 127 GRYHLAIDTGMTRIGVRREDLLEVRGSIDFHRGLECAGTFTHFATADVLDNWDFDLQVNR 186 Query: 182 FRTLISHYKGIEASL-----ASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234 F I+ K L ++ G +L + F + R GI LYG +Q Sbjct: 187 FVEAITALKNAGYELGLVHADNTPGTILHKDIQFDMVRVGIGLYGLHPSKLTIPRIDLQL 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ R+ + G+ V YG ++ R++ +A IGYADG LS Sbjct: 247 VMSVRGRVTRVVYPAVGDGVGYGMTWRVPRNNIQVATVPIGYADGLARNLSNRMD----- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDIT--------DSLSIEVGDYIQIFGPD----I 341 +G V +G I MD M + I GD + + G D I Sbjct: 302 ------VLARGSRVRQVGNICMDQFMIAVDTTGARANKPVYEICYGDVVTLIGKDGDQEI 355 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +D++A T NY+++ G R K Y Sbjct: 356 TVDEMADLRETINYEVVCNFGARLDKVY 383 >gi|217967880|ref|YP_002353386.1| alanine racemase [Dictyoglomus turgidum DSM 6724] gi|217336979|gb|ACK42772.1| alanine racemase [Dictyoglomus turgidum DSM 6724] Length = 378 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 161/375 (42%), Gaps = 28/375 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63 +I+L+ L +N + G AVVK +AYG G + I+ L A + F V Sbjct: 5 LAWREINLSFLLDNLKVIKEKVGGKVDVIAVVKADAYGHGAKVISLFLQKYANINTFAVA 64 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 ++EG+ LR +I VL F+ L PVIS + L + Sbjct: 65 HIDEGIFLRKIGVNKKILVLSPQLKSSIPYYFEYELTPVISDIEFLDELGKYSNNKDKKL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L DTG R G E+ + L I SHL+ ++ N Q + F Sbjct: 125 KVHLIFDTGMGREGFLPSESEEILKLLRRYPNLILEGISSHLSNPENKKDPYNIFQKKLF 184 Query: 183 RTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +K + +++ GI P +HF RPGISLYG DK+ K V+ +A Sbjct: 185 YDIYNQFKDEDLVFHFSNTGGIFNFPEFHFNAVRPGISLYGYGDKLLKP-----VMEIKA 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI L+++ G V YG + + IA+ +GYADGY LS G+ Sbjct: 240 RITLVKELPEGWGVGYGHTFMTEKSTKIAIVPLGYADGYRRDLSN-----------KGRV 288 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYD 356 + G I+G+++MD DITD ++ GD + + G + + ++A+ S T Y+ Sbjct: 289 IVNGEYCKIIGRVSMDQFTIDITD-KEVKRGDLVTVMGRENEKMVDAQELAILSNTIPYE 347 Query: 357 LLVRIG--TRYAKFY 369 +L G R Y Sbjct: 348 ILTGFGSAKRLKSIY 362 >gi|163741439|ref|ZP_02148830.1| alanine racemase [Phaeobacter gallaeciensis 2.10] gi|161385173|gb|EDQ09551.1| alanine racemase [Phaeobacter gallaeciensis 2.10] Length = 345 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 192/365 (52%), Gaps = 25/365 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL ++L AL NW +++AL+ N TAAVVK N YGL ++ AL NAG ++FFV E Sbjct: 4 ARLTLNLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGKALANAGARNFFVAMAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I V G G K++ D L P+++S+ Q+ + + + HP+ Sbjct: 63 EGVALRRAIGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESL---PGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+DTG NRLG+ E + ++ L++SHLACAD+ + +NS QL+ F Sbjct: 120 VQLDTGMNRLGMEAAEWAAVRDIALSQ---GPVLLMSHLACADETTHPMNSHQLQNFLD- 175 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 ++ + SLA++ G+LLG NYHF L RPGI LYGG + V + +I I Sbjct: 176 LTEGLDLPRSLAATGGLLLGRNYHFDLCRPGIGLYGGQPYGDA----LPVAQLDLPVIQI 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG R S IA A GYADG L + + G Sbjct: 232 RSLDPGETVGYGNSWAAQRPSRIATVAAGYADGLHRALGSGQI----------QVYAGGT 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++MD+ D+TD ++ I +D +A A+GT Y++L +G+RY Sbjct: 282 PCPVVGRVSMDLITVDVTDLGDDP--SHLAILNERQTVDTLADAAGTIGYEILTSLGSRY 339 Query: 366 AKFYT 370 A+ YT Sbjct: 340 ARSYT 344 >gi|254509706|ref|ZP_05121773.1| alanine racemase [Rhodobacteraceae bacterium KLH11] gi|221533417|gb|EEE36405.1| alanine racemase [Rhodobacteraceae bacterium KLH11] Length = 405 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 186/362 (51%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L I+L AL NW +++A + N T AVVK +AYGLG E +A AL GV+ FFV + EEG Sbjct: 67 LTINLHALAQNWQALDAGT-NVETGAVVKADAYGLGAEPVAWALAEEGVRKFFVAAAEEG 125 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R P + V G G ++ + +L P+I+S Q + + + + +Q Sbjct: 126 ATVREAVGPGPMVAVFSGHMEGDADLLRNHDLTPLINSPEQ---FKRHLQALPDRKFGIQ 182 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL + + H++ +++SHLAC+D+P +N QL+ F+ + Sbjct: 183 LDTGMNRLGLEPSDWAELRHDALKL---DPLVVMSHLACSDEPEHPMNKQQLQTFKQMTD 239 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ G LLG YHF RPGI LYGG VVT + II +R Sbjct: 240 G-VEVPRSLAATGGTLLGSEYHFDFCRPGIGLYGGMPFAGAK----PVVTVDLPIIQVRD 294 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG K R S IA A GYADG + G G F Sbjct: 295 VAVGETVGYGNAWKARRPSKIATVAAGYADGLHRAIGG-----------GIDAFAGDQPC 343 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+I+MD+ D+TD + ++I +DD+A A+GT Y++L +G+RY++ Sbjct: 344 PVVGRISMDLITVDVTDLP--YTPERLRILNGHQTVDDLAEAAGTIGYEILTSLGSRYSR 401 Query: 368 FY 369 Y Sbjct: 402 GY 403 >gi|256818882|ref|YP_003140161.1| alanine racemase [Capnocytophaga ochracea DSM 7271] gi|256580465|gb|ACU91600.1| alanine racemase [Capnocytophaga ochracea DSM 7271] Length = 369 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 149/379 (39%), Gaps = 23/379 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M + E + L+I+LTAL+ N + L VVK ++YG IA L G Sbjct: 1 MKTEETV-LEINLTALEKNVLYLKSRLKPTTLFLGVVKASSYGNNSVPIALHLQKKGLAN 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V EG LR I VL+ P I L P + S + + Sbjct: 60 YFAVAYTSEGKALREAGITLPILVLHP-QPINFDDIVKYKLEPTLYSQRITKLFLEYAEK 118 Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVN 175 +P L+ +TG NRLG L E + N + SHLA ++D + Sbjct: 119 HHLVKYPVHLKCNTGLNRLGFDLNEIDEVLALLKNNTTVTVKTAYSHLAASEDMNEKEFT 178 Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q++ F + ++SGIL + F + R GI +YG + Sbjct: 179 ENQIKTFIAFQEKINKTFSHKVIYHQCNTSGILNYAHAQFDMVRCGIGMYGFANDAQLQQ 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + ++T ++ I I G+ + Y + A +G+ADG Sbjct: 239 YLTPIMTLKSVISQIHTLQVGDSLGYNRGYIADHITKTATIPVGHADGINRIYG------ 292 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 G FI G PI+G + MDM + D+T+ E G + +F D + +A ++ Sbjct: 293 ----KGKGFVFINGKKAPIIGNVCMDMILVDVTNIP-CEEGGEVIVFDKDHTAETLAESA 347 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+L+ + R + Y Sbjct: 348 GTISYELITSMAHRIKRVY 366 >gi|257126593|ref|YP_003164707.1| alanine racemase [Leptotrichia buccalis C-1013-b] gi|257050532|gb|ACV39716.1| alanine racemase [Leptotrichia buccalis C-1013-b] Length = 365 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 151/371 (40%), Gaps = 21/371 (5%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I++ L +N + + + AV+K +AYG G KI AL G+++F V + +E Sbjct: 4 WAEININNLYSNIDEIEKIVAKDKIIAVIKADAYGHGMLKICDALIKKGIKNFAVATSDE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +K++ + +L + +I D N+ +++ ++ + K Sbjct: 64 ALKIKELHNDIMVLILGPVENEYMDLIADKNIYFMVTDFEEIEYLEKTGGKKGKTTDVFI 123 Query: 128 -VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +DTG R+G E D + + I + D +Q +F+ + Sbjct: 124 KIDTGMGRVGFQESEVEDL-NKILKNSSHINPIGIFSHFSSSDSDKDYTKLQESKFKAMC 182 Query: 187 SHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVTAEA 240 L +S G L + R GI LYGG D+ + + V++ A Sbjct: 183 EKISSGIPSIKYRHLHNSFGTLKFQDSIEDFVRVGIILYGGVIDEETFPYKFKPVMSLLA 242 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I I+ +SYG K A +IGYADG LS G Sbjct: 243 KISYIKTLKEDSFISYGNTYKGKAGGTYATVSIGYADGVRRDLSN-----------KGYV 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 F KG+ I+G++ MD M + D L + GD ++ FG +I + +VA T +Y+++ Sbjct: 292 FYKGHKCEIVGRVCMDQLMILLPDELKDMAKKGDIVEFFGENISVVEVADLCNTISYEIM 351 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 352 CGISQRVPRIY 362 >gi|148238739|ref|YP_001224126.1| alanine racemase [Synechococcus sp. WH 7803] gi|147847278|emb|CAK22829.1| Alanine racemase [Synechococcus sp. WH 7803] Length = 393 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 109/379 (28%), Positives = 173/379 (45%), Gaps = 26/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++ A+++N ++ L + AVVK + YG G E +A A G V Sbjct: 23 RQRAWMEVSAQAVESNARALRQLLAPGCALMAVVKADGYGHGAETVARAAICGGATSLGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EG++LR + + VL I + L+P +SS+ + L S G Sbjct: 83 ATLQEGIELRRAGLELPVLVLGNLIQVEDLRACLHWQLMPTLSSMREALLCQNLASGSGR 142 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNS 176 L++DTG RLG Q+ T L + SHLA AD S + Sbjct: 143 RFAVQLKLDTGMTRLGCDWQDGSRLTQAIQQLDQLILRGVYSHLALADGGPSGDAERITR 202 Query: 177 VQLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232 +Q ERF + ++ ++ LA+S+G L + H R G++LYG +N++ P+ Sbjct: 203 LQQERFEAVTRAHRSDNLQFHLANSAGTLRDRSLHHDQVRVGLALYGHAPSEHLNQTVPL 262 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + +AR+ LIR AG VSYG + +R S +AV IGYADG LSG + Sbjct: 263 EPAMGVKARVSLIRDVPAGVGVSYGHRFVTSRPSRLAVVGIGYADGVSRCLSGQIA---- 318 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G +P +G ITMD M D TD +++VGD + + G D I D A Sbjct: 319 -------VLHAGRRLPQVGAITMDQLMVDATDHPTLDVGDVVTLLGSDGDAVIHPQDWAE 371 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S + +++L R + Sbjct: 372 LSDSIPWEVLCSFKHRLPR 390 >gi|308232460|ref|ZP_07664093.1| alanine racemase alr [Mycobacterium tuberculosis SUMu001] gi|308370262|ref|ZP_07420828.2| alanine racemase alr [Mycobacterium tuberculosis SUMu002] gi|308371343|ref|ZP_07424633.2| alanine racemase alr [Mycobacterium tuberculosis SUMu003] gi|308372542|ref|ZP_07667405.1| alanine racemase alr [Mycobacterium tuberculosis SUMu004] gi|308373739|ref|ZP_07433510.2| alanine racemase alr [Mycobacterium tuberculosis SUMu005] gi|308374873|ref|ZP_07667888.1| alanine racemase alr [Mycobacterium tuberculosis SUMu006] gi|308376117|ref|ZP_07446099.2| alanine racemase alr [Mycobacterium tuberculosis SUMu007] gi|308377347|ref|ZP_07441912.2| alanine racemase alr [Mycobacterium tuberculosis SUMu008] gi|308378321|ref|ZP_07482199.2| alanine racemase alr [Mycobacterium tuberculosis SUMu009] gi|308379509|ref|ZP_07486543.2| alanine racemase alr [Mycobacterium tuberculosis SUMu010] gi|308380696|ref|ZP_07669258.1| alanine racemase alr [Mycobacterium tuberculosis SUMu011] gi|308213938|gb|EFO73337.1| alanine racemase alr [Mycobacterium tuberculosis SUMu001] gi|308324884|gb|EFP13735.1| alanine racemase alr [Mycobacterium tuberculosis SUMu002] gi|308329065|gb|EFP17916.1| alanine racemase alr [Mycobacterium tuberculosis SUMu003] gi|308332926|gb|EFP21777.1| alanine racemase alr [Mycobacterium tuberculosis SUMu004] gi|308336536|gb|EFP25387.1| alanine racemase alr [Mycobacterium tuberculosis SUMu005] gi|308340412|gb|EFP29263.1| alanine racemase alr [Mycobacterium tuberculosis SUMu006] gi|308344272|gb|EFP33123.1| alanine racemase alr [Mycobacterium tuberculosis SUMu007] gi|308348222|gb|EFP37073.1| alanine racemase alr [Mycobacterium tuberculosis SUMu008] gi|308352946|gb|EFP41797.1| alanine racemase alr [Mycobacterium tuberculosis SUMu009] gi|308356810|gb|EFP45661.1| alanine racemase alr [Mycobacterium tuberculosis SUMu010] gi|308360758|gb|EFP49609.1| alanine racemase alr [Mycobacterium tuberculosis SUMu011] Length = 347 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 146/352 (41%), Gaps = 26/352 (7%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 AVVK + YG G ++A AG + V +V+E + LR A + Sbjct: 1 MAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPGIDFG 60 Query: 93 IIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 ++ +SS+ Q + G + ++VDTG NR G+ + Sbjct: 61 PALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQ 120 Query: 152 KKLGQLSL---IISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASLASSSGIL 203 ++SH+ AD P +N VQ +RF ++ + A L++SS + Sbjct: 121 AMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATM 180 Query: 204 LGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262 P+ F L RPGI++YG + + +T + + L++ AGE VSYG Sbjct: 181 ARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIA 240 Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322 RD+ +A+ IGYADG +L G + I G P +G+I MD M D+ Sbjct: 241 PRDTNLALLPIGYADGVFRSLGGRL-----------EVLINGRRCPGVGRICMDQFMVDL 289 Query: 323 TDSL-SIEVGDYIQIFGPDI----KLDDVALASGTTNYDLLVRIGTRYAKFY 369 + GD +FGP I D A GT +Y+++ R + Y Sbjct: 290 GPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTY 341 >gi|116333170|ref|YP_794697.1| alanine racemase [Lactobacillus brevis ATCC 367] gi|122270141|sp|Q03T06|ALR_LACBA RecName: Full=Alanine racemase gi|116098517|gb|ABJ63666.1| alanine racemase [Lactobacillus brevis ATCC 367] Length = 373 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 84/380 (22%), Positives = 143/380 (37%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +L ID AL +N + + L+ VVK N YG G ++A AG F V Sbjct: 6 HRPTQLVIDRQALHDNIQAEVTRLASGCELFMVVKANGYGHGAVQVAQVAKEAGATGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCG 119 ++E ++LR I VL P ++ + + + Y L Sbjct: 66 AILDEALELRAAGFNEPILVLGVTEPEDAPLMAQQHISATVAATDWLVAADAYLALAQPT 125 Query: 120 VSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L +DTG R+G E I +H A AD P Q Sbjct: 126 APLQVHLGLDTGMGRIGFKTTTELTTAVSYLATHATLNFEGIFTHFATADSPDETYFKQQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 + +++TL + K + +S+ L + + R G++ YG I + ++ Sbjct: 186 VAKWQTLTAALKERPRYVHVSNSATSLWHAACNDNMVRFGVAGYGLNPSGTAIPAPYALK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ ++++ ++ +AGE V YG + + IGYADGY L G Sbjct: 246 PALSLTSQLVHSKQVVAGESVGYGATYTAQQTEWVGTVPIGYADGYERRLQGF------- 298 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + G I+G++ MD M + G + + G D I L ++A Sbjct: 299 -----HVLVDGQACEIIGRVCMDQLMIRLPHDY--ARGTRVTLIGRDGDHVITLQEMADY 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y+L +R + Y Sbjct: 352 CQTIHYELACGFTSRLPRVY 371 >gi|303232760|ref|ZP_07319445.1| alanine racemase [Atopobium vaginae PB189-T1-4] gi|302481246|gb|EFL44321.1| alanine racemase [Atopobium vaginae PB189-T1-4] Length = 386 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 169/387 (43%), Gaps = 33/387 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++++L A+++N ++ +L + + A+VK +AYG G A A+ +AG Q F V Sbjct: 9 RNAWMEVNLAAIRHNVRTIKSLMAPTCKLMAIVKADAYGHGAGVCARAMASAGAQQFGVA 68 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSH 122 +V+E ++LR I +L ++ + +++P V SS L + ++ + Sbjct: 69 TVQEALELRQSGIAQPIVLLSEPPVETIDLLLENDIMPGVTSSEFVLAYGECAIAHDMVG 128 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 Y L +DTG R+G+ ++A++F + + +H A AD Q++RF Sbjct: 129 KYHLALDTGMTRIGIPAEDAVEFRRLVDFHRGIVCAGTYTHFATADTIGDWDFRRQVQRF 188 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 I + +++ +L P+ F + R GI+LYG + + ++ Sbjct: 189 TDAIRALHEAKLYPGIVHCDNTAATMLYPDIQFDMCRVGIALYGIHPAESTVELAELEPA 248 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI + G+ VSYG ++ + IA IGYADG +LSG Sbjct: 249 MSIRARITRVANPRIGDGVSYGMTYRVNTPYMQIATIPIGYADGLSRSLSGEMD------ 302 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI--------TDSLSIEVGDYIQIFGPD----IK 342 + G +G+I MD MF T + + VGD + I G D I Sbjct: 303 -----VLVHGRRARQVGRICMDQCMFAYPLRSMTSSTMAPELAVGDVVTIMGSDKDEYIS 357 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 D++ T Y++L R + Y Sbjct: 358 ADEIGQLRHTIAYEVLCNFSARLERVY 384 >gi|283457594|ref|YP_003362178.1| alanine racemase [Rothia mucilaginosa DY-18] gi|283133593|dbj|BAI64358.1| alanine racemase [Rothia mucilaginosa DY-18] Length = 437 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 162/391 (41%), Gaps = 30/391 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL AL++N + L G+ AV+K +AYG G +A + AG V V E Sbjct: 25 ATIDLDALEHNVRRLKELIGDRVLIAVIKADAYGHGAYPVARSAIAAGADLLGVVHVNEA 84 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR A + + + +S + G L+ Sbjct: 85 LELRADGIDAPLMAWLHTPSTDFEAALQEKIRLGVSGWDLEAVAAAAECTGERAIVHLKA 144 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG R G + + + + + L + I SHLA AD+P+ + Q++ T Sbjct: 145 DTGLGRNGATAADWPALVARAASLEDAGLITVEGIFSHLAVADEPTRAETAQQVDTLDTF 204 Query: 186 ISHYK--GIEASLASSSG-------ILLGPNYH----FQLTRPGISLYGGTDKIN---KS 229 ++ + G++ + + L G + R G++LYG + + Sbjct: 205 VAQAREAGLDPKIVHLANSPATLTASLEGWDTEERLLGDGVRCGLALYGLSPLPEVTAED 264 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+T + I +++ AG+ VSYG + + + +A+ +GYADG P Sbjct: 265 LGLKPVMTVGSYIAAVKEVPAGQGVSYGLRYHTPKATTLALVPLGYADGVPRIAENAPVR 324 Query: 290 HSPSVFLGGKGFI----KGYMVPILGKITMDMTMFDITD----SLSIE-VGDYIQIF--G 338 P G + +G ++G+I MD + D+ + ++ +G +F G Sbjct: 325 IYPGAQNAENGSVPNNAEGKTYRVVGRIAMDQMVVDLGEPGLSDPALGYLGAPAILFGAG 384 Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +++ A A+ T NY+++ RI +R + Y Sbjct: 385 ENPPVEEWADAAQTINYEIVTRISSRVERLY 415 >gi|223938778|ref|ZP_03630666.1| alanine racemase [bacterium Ellin514] gi|223892476|gb|EEF58949.1| alanine racemase [bacterium Ellin514] Length = 392 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 165/379 (43%), Gaps = 25/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++IDL L+ N+ + + + VVKD AYG G K+A A AGV+ + Sbjct: 24 RRPAWIEIDLKQLRRNYEVINREKTKGLKLLLVVKDEAYGHGGLKVAKAALEAGVEFLSL 83 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++++E + LR RI +L + NL + S + KL G Sbjct: 84 SNLDEAMALRGGGIDTRILLLGERQDEELPWCVAQNLTCCVDSQEVVLKLGKLAEKVGRP 143 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P L+++TG NR G+ EAL + K Q ++SH A +D+ ++QLER Sbjct: 144 VPVHLKINTGMNRYGVRWTEALALVEFILSTKSLQFEGVLSHFAMSDELDKTFANLQLER 203 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQT 234 F+ +++ + +S G L P HF + R G+ YG + + Sbjct: 204 FKMVLAELADKSIHVKYRHICNSGGFLDLPQAHFDMVRIGLLQYGVYPSQVCRRIPGIAP 263 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ +ARI + A ++V YG + K I V IGY DGYP + Sbjct: 264 VMSVKARIAAFQNIEAEDVVGYGMRYKAPSPRRIGVIPIGYGDGYPR------------I 311 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 G I+G P++G + MD M D+TD ++ + I + G +I + DVA Sbjct: 312 RNEGYVLIRGRRAPLVGGVAMDAIMVDVTDVPEAQLWEEIVLMGRQGDEEISVHDVARWK 371 Query: 351 GTTNYDLLVRIGTRYAKFY 369 + +YD+L R + Y Sbjct: 372 NSVSYDILTGWRARLPRIY 390 >gi|197247858|ref|YP_002146222.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211561|gb|ACH48958.1| alanine racemase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 356 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|53719788|ref|YP_108774.1| alanine racemase [Burkholderia pseudomallei K96243] gi|53723911|ref|YP_103215.1| alanine racemase [Burkholderia mallei ATCC 23344] gi|67639484|ref|ZP_00438337.1| alanine racemase [Burkholderia mallei GB8 horse 4] gi|76809305|ref|YP_333995.1| alanine racemase [Burkholderia pseudomallei 1710b] gi|121600921|ref|YP_993394.1| alanine racemase [Burkholderia mallei SAVP1] gi|124383506|ref|YP_001029170.1| alanine racemase [Burkholderia mallei NCTC 10229] gi|126441754|ref|YP_001059490.1| alanine racemase [Burkholderia pseudomallei 668] gi|126450850|ref|YP_001080901.1| alanine racemase [Burkholderia mallei NCTC 10247] gi|126454140|ref|YP_001066773.1| alanine racemase [Burkholderia pseudomallei 1106a] gi|134277700|ref|ZP_01764415.1| alanine racemase [Burkholderia pseudomallei 305] gi|166999682|ref|ZP_02265517.1| alanine racemase [Burkholderia mallei PRL-20] gi|167720193|ref|ZP_02403429.1| alanine racemase [Burkholderia pseudomallei DM98] gi|167739195|ref|ZP_02411969.1| alanine racemase [Burkholderia pseudomallei 14] gi|167816406|ref|ZP_02448086.1| alanine racemase [Burkholderia pseudomallei 91] gi|167846316|ref|ZP_02471824.1| alanine racemase [Burkholderia pseudomallei B7210] gi|167894898|ref|ZP_02482300.1| alanine racemase [Burkholderia pseudomallei 7894] gi|167903285|ref|ZP_02490490.1| alanine racemase [Burkholderia pseudomallei NCTC 13177] gi|167911526|ref|ZP_02498617.1| alanine racemase [Burkholderia pseudomallei 112] gi|167919536|ref|ZP_02506627.1| alanine racemase [Burkholderia pseudomallei BCC215] gi|217421882|ref|ZP_03453386.1| alanine racemase [Burkholderia pseudomallei 576] gi|237812829|ref|YP_002897280.1| alanine racemase [Burkholderia pseudomallei MSHR346] gi|242314484|ref|ZP_04813500.1| alanine racemase [Burkholderia pseudomallei 1106b] gi|254177500|ref|ZP_04884155.1| alanine racemase [Burkholderia mallei ATCC 10399] gi|254179300|ref|ZP_04885899.1| alanine racemase [Burkholderia pseudomallei 1655] gi|254189313|ref|ZP_04895824.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237] gi|254197584|ref|ZP_04904006.1| alanine racemase [Burkholderia pseudomallei S13] gi|254200168|ref|ZP_04906534.1| alanine racemase [Burkholderia mallei FMH] gi|254206506|ref|ZP_04912858.1| alanine racemase [Burkholderia mallei JHU] gi|254261307|ref|ZP_04952361.1| alanine racemase [Burkholderia pseudomallei 1710a] gi|254297188|ref|ZP_04964641.1| alanine racemase [Burkholderia pseudomallei 406e] gi|254358084|ref|ZP_04974357.1| alanine racemase [Burkholderia mallei 2002721280] gi|81823990|sp|Q62JA4|ALR_BURMA RecName: Full=Alanine racemase gi|166919548|sp|A3MKW5|ALR_BURM7 RecName: Full=Alanine racemase gi|166919549|sp|A2SB51|ALR_BURM9 RecName: Full=Alanine racemase gi|166919550|sp|A1V591|ALR_BURMS RecName: Full=Alanine racemase gi|52210202|emb|CAH36181.1| alanine racemase, catabolic [Burkholderia pseudomallei K96243] gi|52427334|gb|AAU47927.1| alanine racemase [Burkholderia mallei ATCC 23344] gi|76578758|gb|ABA48233.1| alanine racemase [Burkholderia pseudomallei 1710b] gi|121229731|gb|ABM52249.1| alanine racemase [Burkholderia mallei SAVP1] gi|124291526|gb|ABN00795.1| alanine racemase [Burkholderia mallei NCTC 10229] gi|126221247|gb|ABN84753.1| alanine racemase [Burkholderia pseudomallei 668] gi|126227782|gb|ABN91322.1| alanine racemase [Burkholderia pseudomallei 1106a] gi|126243720|gb|ABO06813.1| alanine racemase [Burkholderia mallei NCTC 10247] gi|134251350|gb|EBA51429.1| alanine racemase [Burkholderia pseudomallei 305] gi|147749764|gb|EDK56838.1| alanine racemase [Burkholderia mallei FMH] gi|147753949|gb|EDK61014.1| alanine racemase [Burkholderia mallei JHU] gi|148027211|gb|EDK85232.1| alanine racemase [Burkholderia mallei 2002721280] gi|157807101|gb|EDO84271.1| alanine racemase [Burkholderia pseudomallei 406e] gi|157936992|gb|EDO92662.1| alanine racemase [Burkholderia pseudomallei Pasteur 52237] gi|160698539|gb|EDP88509.1| alanine racemase [Burkholderia mallei ATCC 10399] gi|169654325|gb|EDS87018.1| alanine racemase [Burkholderia pseudomallei S13] gi|184209840|gb|EDU06883.1| alanine racemase [Burkholderia pseudomallei 1655] gi|217395624|gb|EEC35642.1| alanine racemase [Burkholderia pseudomallei 576] gi|237506222|gb|ACQ98540.1| alanine racemase [Burkholderia pseudomallei MSHR346] gi|238520031|gb|EEP83495.1| alanine racemase [Burkholderia mallei GB8 horse 4] gi|242137723|gb|EES24125.1| alanine racemase [Burkholderia pseudomallei 1106b] gi|243064332|gb|EES46518.1| alanine racemase [Burkholderia mallei PRL-20] gi|254219996|gb|EET09380.1| alanine racemase [Burkholderia pseudomallei 1710a] Length = 356 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 147/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + + ++ A+VK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD + Q+ F Sbjct: 121 QLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDADGERG--VAEQMATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 G S A+S+ +L P+ HF RPGI LYG + ++ +T + Sbjct: 179 GAQGIAGAR-SFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG I V A GYADGYP G Sbjct: 238 ELIAVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPRIA-----------PEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA T Y+L+ Sbjct: 287 VVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|254497101|ref|ZP_05109922.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353681|gb|EET12395.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 351 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 159/361 (44%), Gaps = 17/361 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + I+ +AL +N + + + +VK NAYG G + P L V+ F V +EE Sbjct: 1 MVIEPSALLHNLAQIRRFAPGKKIITMVKANAYGCGLHAVVPVL-EGQVEAFGVACIEEA 59 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + +R + + G+ E + + P + ++V Sbjct: 60 MAIRKMGSRTYCILFQGVFSPDEFKMVAQYQFGCVMHQPHQMQWLLNTPLDTPIKLWVKV 119 Query: 129 DTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +TG +RLG E + + + + + +++HLACAD+P N Q+ F + Sbjct: 120 NTGMHRLGFKPHELQEVMNALQDCPWVDKEIGLMTHLACADEPECIENVQQISLFEQISV 179 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIIL 244 + S+A+S+ I+ P H + RPGI LYG + + + V+ + I Sbjct: 180 AGFS-QRSIANSAAIISFPQTHADVVRPGIMLYGVSPFAKQTAIDLGLVPVMRFVSAISA 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + V Y G K + S I + A GY DGYP + +++G Sbjct: 239 VYDHPPFAQVGYSGTWKSDKPSRIGIVAAGYGDGYPRHI-----------AANTPIWVQG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 V I+G+++MDM D+T+ I+ G ++++G I ++ +A A+GT+ Y+LL +I R Sbjct: 288 REVTIVGRVSMDMLAVDLTEHPDIQPGAPVELWGTHILVERIAQAAGTSGYELLCQISER 347 Query: 365 Y 365 Sbjct: 348 V 348 >gi|312868223|ref|ZP_07728423.1| alanine racemase [Streptococcus parasanguinis F0405] gi|311095968|gb|EFQ54212.1| alanine racemase [Streptococcus parasanguinis F0405] Length = 370 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 154/378 (40%), Gaps = 25/378 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + ++DL A+ N ++ + AVVK NAYG G + L V F Sbjct: 5 KHRPTVARVDLDAIAFNVQQVSDHIPSQALKYAVVKANAYGHGVVAVTKKLAPQ-VDGFC 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V++++E +++R Q + +L + + + ++ ++S+ L + Sbjct: 64 VSNMDEALEIREEGLQHPLLILGVVPSETVNLAKEHDIRLTVASLAWLVQLLGQEADLSG 123 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VD+G R+G E + ++ I +H A AD+ Q + Sbjct: 124 LKVHIKVDSGMGRIGFRTIEEIKEAERLLIAAGAEIEGIFTHFATADEADDRKFQAQYQF 183 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F+ +++ + + + +S+ L + F R G +YG + + ++ + Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYGLNPSGSVLALPYEIKPAL 243 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + ++ +++ AG+ + YG I IGYADG+ + Sbjct: 244 SLVSELVHVKQLEAGQDIGYGATYTTEEPQWIGTIPIGYADGWIREMQNF---------- 293 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 IKG PI+G+++MD + + L + G + + G +I +VA GT Sbjct: 294 --HVLIKGEFCPIVGRVSMDQITVRLPEELPL--GTKVTLIGREGEKEITATEVADYRGT 349 Query: 353 TNYDLLVRIGTRYAKFYT 370 NY+++ + R + YT Sbjct: 350 INYEVVCLLSDRIPRDYT 367 >gi|146277115|ref|YP_001167274.1| alanine racemase [Rhodobacter sphaeroides ATCC 17025] gi|226711058|sp|A4WRF5|ALR_RHOS5 RecName: Full=Alanine racemase gi|145555356|gb|ABP69969.1| alanine racemase [Rhodobacter sphaeroides ATCC 17025] Length = 349 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 190/365 (52%), Gaps = 26/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L IDL A+ NW +++ + + + +T AVVK +AYGLG K+A AL AG + FFV + Sbjct: 4 ATLTIDLDAIAANWRALDQMTASDCQTGAVVKADAYGLGAAKVAHALARAGARRFFVAAC 63 Query: 66 EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EEG ++R +I V G G +I D +L P+++S+ QLT + + + P+ Sbjct: 64 EEGAEVRRALGSGPQICVFSGHMEGDTALIRDFDLTPMLNSIEQLTRHFETLGGQ---PF 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 LQ+D+G NRLGL E + L++SHLACAD+P +N+ QL FR Sbjct: 121 GLQLDSGMNRLGLEPGEWEAVAATALEA---GPELLMSHLACADEPDHPMNTEQLRAFRA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + G+ SL+++ GILLGP +HF+LTRPGI LYGG + VV ++ Sbjct: 178 MTDG-TGVPRSLSATGGILLGPAWHFELTRPGIGLYGGRPFEEA----RPVVHLSLPVVQ 232 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ GE V Y S IA A GYADG P TLS S + V Sbjct: 233 VREVEIGEPVGYSNSWTAEHTSTIATVAAGYADGLPRTLSSRASLFAGRV---------- 282 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+++MD+ D++ + D + I DD+A +GT Y++L +G R Sbjct: 283 -PCPLVGRVSMDLITVDVSHLPEVP--DALDILCRHQTPDDLADTAGTIGYEILTSLGRR 339 Query: 365 YAKFY 369 Y + Y Sbjct: 340 YQRRY 344 >gi|262038156|ref|ZP_06011553.1| alanine racemase [Leptotrichia goodfellowii F0264] gi|261747804|gb|EEY35246.1| alanine racemase [Leptotrichia goodfellowii F0264] Length = 363 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 158/370 (42%), Gaps = 23/370 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I++ L +N + ++ AV+K + YG G EKI AL G+++F V + EE Sbjct: 4 WAEINIKNLYDNIKEIEKITSKEHIMAVIKADGYGHGMEKICEALIKTGIKNFAVATSEE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 K+R I +L I + + N+ +I+ ++ + K + ++ Sbjct: 64 AHKIREIDDSVNILILGPIENDHANSVSEKNIYFMITDFQEIDYLEKNKC---NTEVFIK 120 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG R+G LQE + + + + + D +Q++RF + + Sbjct: 121 IDTGMGRVGFQLQEIEKLA-ETLKRCKYVKPIGVFSHFSSSDSDVDYTDLQIKRFEEVSN 179 Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLY-GGTDKINKSHPMQTVVTAEAR 241 K L +S G L + R GI +Y G T++ K + + V++ A+ Sbjct: 180 KLKKELPTVKYRHLLNSFGSLRFQKNKYDFIRAGIIIYGGVTEEETKPYKFKPVMSLYAK 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I I+ +SYG + +A +IGYADG LS G + Sbjct: 240 ISYIKTLSEDSYISYGNTYLGKKGETLATVSIGYADGVRRDLSN-----------KGYVY 288 Query: 302 IKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 KG+ I+G++ MD + + + + GD ++ FG +I + DVA T +Y++L Sbjct: 289 YKGHKCNIVGRVCMDQLVIKLPEKLAKEAAKGDKVEFFGENINVVDVANLCNTISYEILC 348 Query: 360 RIGTRYAKFY 369 I R + Y Sbjct: 349 GISQRVPRIY 358 >gi|239630389|ref|ZP_04673420.1| alanine racemase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526672|gb|EEQ65673.1| alanine racemase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 378 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 150/379 (39%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPAKVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SS L ++ P Sbjct: 67 ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQ 178 L +DTG R+G + +AL Q + I +H A AD P Q Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHSKQFVIEGIFTHFATADAPDDTYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 +++F L+ + +S+ L + + R G+++YG + P+ Sbjct: 187 VDKFNHLVDLLPSRPRYVHVSNSATSLWHAVCNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + D I IGYADG+ L G Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDEFIGTVPIGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + R + Sbjct: 353 YSKTIHYEIACNLTPRLKR 371 >gi|148273757|ref|YP_001223318.1| putative alanine racemase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831687|emb|CAN02656.1| putative alanine racemase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 566 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 162/374 (43%), Gaps = 25/374 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R +DL A+++N ++ AL+ ART VK +AYG G ++A A AG + V V Sbjct: 17 RAVVDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALEAGAESLAVLDVAS 76 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 V+LR AR+ ++ + + +S++ +L + + G+ L Sbjct: 77 AVELRRSGITARLLAWLHGVDTDFRVAVENGIDLGVSALWELERIAAAGRATGIRARVHL 136 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 + DTG +R G + + D + + + + D S + L RF + Sbjct: 137 KADTGLSRNGATPELWPDLVRAAVAADAAGELTLHALWSHLADASPEDDDAALARFHEAV 196 Query: 187 S-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTA 238 + +E LA+SS + P F + R GI++YG + + + + +T Sbjct: 197 RVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRSGRDLGLIPAMTL 256 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 EA ++ +++ AG VSYG + S + + +GYADG P + S Sbjct: 257 EADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRIAAPRAS---------- 306 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 + G P+ G+I MD + D+ D +EVGD I GP + ++ A + T Sbjct: 307 -VLLNGRRFPVAGRIAMDQLVLDVGDLP-VEVGDTAVILGPGDRGEPTAEEWAGWAETIG 364 Query: 355 YDLLVRIGTRYAKF 368 +++ R+G R + Sbjct: 365 DEIVTRVGPRVDRV 378 >gi|117927564|ref|YP_872115.1| alanine racemase [Acidothermus cellulolyticus 11B] gi|117648027|gb|ABK52129.1| alanine racemase [Acidothermus cellulolyticus 11B] Length = 405 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 168/384 (43%), Gaps = 28/384 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +DL A++ N + A++G AVVK + YG G A A G V Sbjct: 26 RASRAQAVVDLGAIRENVRRLRAVTG-VDVMAVVKADGYGHGLLPAARAAVRGGASWLGV 84 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVS 121 VEE + LR+ I L + ++ +S+ + G + Sbjct: 85 AFVEEALALRMAGIDVPILCLLAAPGERFAEAIAADVDLAVSAEWALSEVCRAATTAGRT 144 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQ 178 L+VDTG +R G + E D + + L ++ I SHL D+P +VQ Sbjct: 145 ARIHLEVDTGLSRGGATPAEWPDLLAATAQARAAGLVEVVGIWSHLVHGDNPEHADTTVQ 204 Query: 179 LERFRT--LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----S 229 +ERF ++ GI LA+S G LL P + L RPGI++YG + Sbjct: 205 VERFDEALAVAERFGIRPAVRHLANSGGALLAPRTRYDLVRPGIAVYGLSPAPALVSAGE 264 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + A++ L+++ AGE +SYG + + R + +A+ +GYADG P + + Sbjct: 265 LGLRPAMHLRAQVALVKELPAGEGISYGHRYRTLRPTRVALIPLGYADGIPRQATNVAPV 324 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 P+V G I G + MD + D+ + GD + IFGP + D+ Sbjct: 325 WFPAV---------GRRT-ISGTVCMDQFVVDVGPDAPVAAGDDVVIFGPGDDGEPTADE 374 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A A GT +Y+++ RIG R + Y Sbjct: 375 WASAVGTISYEIVSRIGARVPRVY 398 >gi|326335280|ref|ZP_08201475.1| Mur ligase domain protein/alanine racemase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692551|gb|EGD34495.1| Mur ligase domain protein/alanine racemase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 368 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 151/379 (39%), Gaps = 23/379 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQ 58 M E L+I L L++N + L + + AVVK N+YG IA L Sbjct: 1 MSVQE-TTLEIRLDNLQHNVLQLKKYLKADTQFLAVVKANSYGNSSIAIAKYLEKKNLAD 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 F V EG++LR I + + + I NL P + S + + Sbjct: 60 YFAVAFTSEGIELRKAGVTKPILIFHPQLI-DFEDIIHYNLEPTLYSKRLIIHFIDFAKK 118 Query: 119 GV--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVN 175 +P+ ++ ++G NRLG S++E D + ++ SHL A D + Sbjct: 119 KNLYEYPFHIKCNSGMNRLGFSVEEIDDICEIIKKQNNIKVKTAFSHLLASEDLEARSFM 178 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q+ F+ I ++SGIL P HF + R GI +YG + Sbjct: 179 EKQISIFKDFQKKLETHFSHKIIYHNCNTSGILNYPEAHFDMVRSGIGMYGFANDTRLQK 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + + ++ I I AG+ V Y + + IA ++G+ADG Sbjct: 239 DFKPITILKSIISQIHHIQAGDYVGYNFGFQAPKAMKIATISVGHADGLNRIYGKGV--- 295 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 G FIK PI+G + MDM M DIT + GD + IF + +A + Sbjct: 296 -------GFVFIKDKKCPIVGNVCMDMIMTDITGL-DCDEGDEVIIFDERHTSETLAETA 347 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T +Y+L+ + R + + Sbjct: 348 QTISYELVTSLSRRIKRIF 366 >gi|227533031|ref|ZP_03963080.1| alanine racemase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189432|gb|EEI69499.1| alanine racemase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 378 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 148/379 (39%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPATVLIDETAILHNIQHEVARLKKQTQLFAVVKADAYGHGMLRVARVAKAAGATGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SS L ++ P Sbjct: 67 ILDEALGLRKADYSEPVLVLGIVPSQYAAIAAAQTISLPVSSTEWLEQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQ 178 L +DTG R+G + +AL Q + +H A AD P Q Sbjct: 127 PLRIHLALDTGMGRIGFTEDQALKTAVAFVEAHPKQFVIEGVFTHFATADAPDDTYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 +++F L+ + +S+ L + + R G+++YG + P+ Sbjct: 187 VDKFNHLVDLLPSRPRYVHVSNSATSLWHAACNGNMIRYGVAIYGLNPSGDAIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + D I IGYADG+ L G Sbjct: 247 EPALSLESELTYCKQVHAGDGISYGVTYRAKGDESIGTVPIGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGQYCEIVGRICMDQFMIRLPKAYPA--GTKVVLVGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + R + Sbjct: 353 YSKTIHYEIACNLTPRLKR 371 >gi|24380196|ref|NP_722151.1| alanine racemase [Streptococcus mutans UA159] gi|81845200|sp|Q8DSF4|ALR_STRMU RecName: Full=Alanine racemase gi|24378201|gb|AAN59457.1|AE015010_6 putative alanine racemase [Streptococcus mutans UA159] Length = 371 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + L +K N + A+T AVVK NAYG G ++A A+ V F V Sbjct: 6 HRPTTALVHLDRIKFNIEQVQHHIPKSAKTFAVVKANAYGHGAVQVAQAIQKQ-VDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + P + + N+ ++ + Sbjct: 65 SNLDEALELRQAGLNDFILILGVLLPEEVALAKKENITITVADLDWFDKVQTENIDLAGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VD+G R+G+ + K ++ I +H A AD+ S+ S QLE F Sbjct: 125 SVHVKVDSGMGRIGVRSTAEANQLIAGLQKAGATVNGIFTHFATADEASTVKFSQQLEMF 184 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 TLIS ++ +S+ + + R GI +YG N + ++ + Sbjct: 185 TTLISQLDYKPQTVHASNSATSIWHSDTVMNAVRLGIVMYGLNPSGNALELPYEVKPALE 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + ++ +++ AG+ V YG ++ +I +GYADG+ L G Sbjct: 245 LTSALVQVKEVQAGDTVGYGATYTASQAEIIGTVPVGYADGWTRDLQGF----------- 293 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G+ I+G+++MD + + + G + + G D I DVA T Sbjct: 294 -HVLVNGHYCEIVGRVSMDQITIRLPKAYPL--GTKVTLIGQDGHETISATDVAEKRETI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L I R + Y Sbjct: 351 NYEVLCLISDRVPRKY 366 >gi|269123699|ref|YP_003306276.1| alanine racemase [Streptobacillus moniliformis DSM 12112] gi|268315025|gb|ACZ01399.1| alanine racemase [Streptobacillus moniliformis DSM 12112] Length = 342 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 150/361 (41%), Gaps = 28/361 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A K N + ++ A+VK NAYG G KI + G+ F V +EE Sbjct: 5 AIIDLDAFKKNLDKILEKIPASKVMAIVKANAYGHGSIKIVESAIEKGINFFGVARIEEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ P+ + VL I + + ISS ++ ++ + + Sbjct: 65 EEILNIFPKVDVLVLSPIMKSDIENAVSKGIHLTISS---FEDIEYILENKINGNFHYAL 121 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG R+G E I SHL+ AD+ + ++Q+E+F +++ Sbjct: 122 DTGMGRIGFMEDEIYRAFSMLK------PIGIYSHLSSADN-DNEYTNMQIEKFNRIVND 174 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + +S G + + L R GI +YG + + V+T +AR+ I+ Sbjct: 175 LDVKYKHILNSFGSINNYE-DYDLYRLGIIMYG----AEMTDIFKPVMTFKARVNHIKVL 229 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 + Y + IA + GYADG ++S K + G P Sbjct: 230 EKDTYIGYSKTYLASCGEKIATISCGYADGMLRSMSNRS-----------KVYFNGKYYP 278 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 I+G I MD M + D I+V DY++IFG +I + D+A T +Y+LL I R + Sbjct: 279 IVGNICMDQFMIKVDD--DIKVNDYVEIFGNNILVGDLAKELNTISYELLCAISHRVKRI 336 Query: 369 Y 369 Y Sbjct: 337 Y 337 >gi|167824787|ref|ZP_02456258.1| alanine racemase [Burkholderia pseudomallei 9] gi|226198963|ref|ZP_03794526.1| alanine racemase [Burkholderia pseudomallei Pakistan 9] gi|225929063|gb|EEH25087.1| alanine racemase [Burkholderia pseudomallei Pakistan 9] Length = 356 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 146/366 (39%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL NN + + ++ A+VK NAYG G ++ P L G F + Sbjct: 3 RPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLR--GTDGFGLLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E VKLR I +L G + + D + + + Sbjct: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + +++H + AD + Q+ F Sbjct: 121 QLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDADGERG--VAEQMATFER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEA 240 G S A+S+ +L P HF RPGI LYG + ++ +T + Sbjct: 179 GAQGIAGAR-SFANSAAVLWHPPAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLAS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I ++ G+ V YG I V A GYADGYP G Sbjct: 238 ELIAVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPRIA-----------PEGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I+G+++MDM D+T VG ++++G + +DDVA T Y+L+ Sbjct: 287 VVDGVRTRIVGRVSMDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 VAPRVP 352 >gi|302869894|ref|YP_003838531.1| alanine racemase [Micromonospora aurantiaca ATCC 27029] gi|302572753|gb|ADL48955.1| alanine racemase [Micromonospora aurantiaca ATCC 27029] Length = 372 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 158/375 (42%), Gaps = 27/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +++DL A++ N + A + +A AVVK + YG G A A +AG V ++ E Sbjct: 6 VRVDLDAIRENVTRLKAGT-SAELMAVVKGDGYGHGMVPAARAALDAGADQLGVCTLAEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 ++LR A + + + + Q L+ Sbjct: 65 LRLREEGITAPVLAWLLSPGLPLHDGITVGVDLGCAGLTQLDEMIQASRRADRPARLHLK 124 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +DTG R G ++ + + + L ++ + SH AD P QL F+ Sbjct: 125 IDTGLARGGATVADWPALLEAAAKAQADGLVEVVGVWSHFVYADSPGHPTTDRQLAVFQE 184 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + + + LA+S+ L P+ HF L RPGI++YG + + ++ +TA Sbjct: 185 GLEMVTRAGLRPRYRHLANSAATLTRPDTHFDLVRPGIAVYGLSPVAGEQFGLRPAMTAR 244 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 AR++L ++ AG VSYG +++ +AV +GYADG P S G Sbjct: 245 ARVMLTKRVAAGTGVSYGHTYLTEQEANLAVVPLGYADGVPRHASNT-----------GP 293 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355 + G I G++ MD + D D + GD +FG + DD A A GT NY Sbjct: 294 VQLAGKRRTISGRVCMDQFVVDCGDD-EVTDGDVATLFGSGADGEPTADDWAEAVGTINY 352 Query: 356 DLLVRIGT-RYAKFY 369 +++ R G R + Y Sbjct: 353 EIVTRFGGVRVPRVY 367 >gi|145219160|ref|YP_001129869.1| alanine racemase [Prosthecochloris vibrioformis DSM 265] gi|145205324|gb|ABP36367.1| alanine racemase [Chlorobium phaeovibrioides DSM 265] Length = 368 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 156/378 (41%), Gaps = 25/378 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + L L++N + +G R VVK NAYG +++ L GV DF V + Sbjct: 1 MTEAIVSLQHLQHNLSEIRRKTGEGVRIMGVVKANAYGHDVHRVSETLEQNGVTDFGVAN 60 Query: 65 VEEGVKL---RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGV 120 ++E ++L R A I Q + + + S + G Sbjct: 61 IQEAIELQTGRALKKPASILAFASPLSSQIPFYLKHGIEMTLCNKETLFAAESHAAATGK 120 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 ++VDTG RLGL A++ S ++ I +H A + QL Sbjct: 121 KLRVHIKVDTGMGRLGLPPAAAMELLRASEQCPGIEVKGIYTHFADSSGDM-EFTRRQLR 179 Query: 181 RFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQ 233 F +L S Y+ + A+S IL P + + RPGI+LYG + ++ Sbjct: 180 DFLSLASEYEHSSGKQVLRHAANSGAILSLPEANLDMVRPGITLYGYHPAKETGTRLSLK 239 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ E +I ++ +G +SY + + IA A GYADGYP LSG Sbjct: 240 PVMQVEGKIAFLKTVPSGSTISYCRTWRAPATTTIATIAAGYADGYPRALSGK------- 292 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASG 351 G + G +G ITMD M D+ S + +VGD + +FG + + +A S Sbjct: 293 ---GARVTANGQSFSQVGTITMDQIMVDLGTSSTAKVGDRVILFGWEGPTTAETLADLSN 349 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y++L + R + + Sbjct: 350 TISYEILCAVSRRADRIF 367 >gi|332161937|ref|YP_004298514.1| alanine racemase, catabolic [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605542|emb|CBY27040.1| alanine racemase, catabolic [Yersinia enterocolitica subsp. palearctica Y11] gi|325666167|gb|ADZ42811.1| alanine racemase, catabolic [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863879|emb|CBX73970.1| alanine racemase [Yersinia enterocolitica W22703] Length = 363 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 20/365 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++L+AL +N + + + G A+ +VVK NAYG G ++ L F + Sbjct: 3 RPISATLNLSALHHNLNVVRSHVGTAKIWSVVKANAYGHGLARVWQGLAA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G Q+ ++ D + K Sbjct: 61 LNEAILLREQGWQGPILLLEGFFQAQDLVLLDHYRLTTAVHSDWQLEVIKAARLTAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ ++G NRLG + +A + + ++SH A AD+P Q + + Sbjct: 121 YLKFNSGMNRLGFPIGQAEAVWQWANSLSNVGEITLMSHFANADNPIG--VDEQFVQIQQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 S + A+S+ IL PN H+ RPGI LYG + + ++ V++ + Sbjct: 179 -ASGHIPAARCFANSAAILRNPNTHYDWVRPGIILYGASPSGDITDIAGLGLRAVMSLHS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG+ V YG + + T I V A GYADGYP G Sbjct: 238 EIIALQSLSAGQSVGYGSRYRATGSQRIGVVACGYADGYPR-----------VAPTGTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T ++G ++I+G ++ +D+VA A+GT Y+L+ Sbjct: 287 MVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDNVAQAAGTVGYELMCA 346 Query: 361 IGTRY 365 + +R Sbjct: 347 LASRV 351 >gi|157370985|ref|YP_001478974.1| alanine racemase [Serratia proteamaculans 568] gi|157322749|gb|ABV41846.1| alanine racemase [Serratia proteamaculans 568] Length = 357 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 148/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L A +NN + + A+ +VVK NAYG G + + +L F + Sbjct: 3 RPISATLHLGAFENNLQVVRRFAPKAKVWSVVKANAYGHGIKHVWRSLAQ--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G Q+ + D + Sbjct: 61 LAEAILLRESGWQGPILLLEGFFKPQDLALLDRYRLTTSVHSDWQLAAIAEAKLSAPLDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + + + ++SH A AD P Q+ Sbjct: 121 YLKVNSGMNRLGFAPERLHAVWMKAQEIGNIASLTLMSHFATADGPQG--VEAQMASIER 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + + LA+S+ L P H RPGI LYG + +Q +T + Sbjct: 179 -AAKGITLPRCLANSAATLWHPQTHGSWVRPGIVLYGASPSGQWRDIADSGLQPTMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ +G+ V YG + + I V A GYADGYP G Sbjct: 238 EIIGVQTLKSGDQVGYGWRYRAEGAQRIGVVACGYADGYPRHAQ-----------TGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++ G + LG ++MDM + D+T +G ++++G + +DDVA A+GT Y+LL Sbjct: 287 WVDGVLTRTLGTVSMDMLVVDLTPCPHAGIGAEVELWGRRLPVDDVATAAGTLGYELLTA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAARVP 352 >gi|300779772|ref|ZP_07089628.1| alanine racemase [Corynebacterium genitalium ATCC 33030] gi|300533882|gb|EFK54941.1| alanine racemase [Corynebacterium genitalium ATCC 33030] Length = 397 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 156/389 (40%), Gaps = 43/389 (11%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL A+ +N + +G A+ VVK NAY G E++ P + AG F V + Sbjct: 24 SPATLHIDLDAIAHNTALLKRGAGAAKLMCVVKANAYNHGVERVVPVMDKAGADAFGVAT 83 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E +++ T + + + L+ P Sbjct: 84 LAEASQVKRLT-DKPVLAWMWAPGEPIPAGIEVGAPTLTH-------LRTLIDVSPHTPV 135 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +DTG NR G+ ++ D + ++SHLACAD+P + N+ Q E F+ Sbjct: 136 HLMLDTGMNRSGIDEEDWAD-AFAIATNAGLTVRGVMSHLACADEPGNPFNTEQYESFQR 194 Query: 185 LI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232 I + G++ LA+S G L F+ R G++LYG ++ P Sbjct: 195 GIALARSMGLDVPCNHLANSPGTLSRKELAFEQIRAGVALYGLDPVAPETGPEAAPGTAP 254 Query: 233 ---------QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + +T A I+ ++ GE SYG D AV +GYADG P Sbjct: 255 NTDFDRAQLRPAMTWSAEIVAVKLIGKGEGASYGLTWTAPEDGYTAVVPVGYADGLPRAW 314 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP-DI 341 + + G P +G+I MD + + D+ ++ GD IFG + Sbjct: 315 QDAV-----------EVTVNGARYPQVGRICMDQFIVWLGDNPADVQPGDTAVIFGEGGM 363 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFYT 370 ++A +GT +Y+++ R + Y+ Sbjct: 364 TAAELADRAGTIHYEVVCSPCGRVERQYS 392 >gi|332637957|ref|ZP_08416820.1| alanine racemase [Weissella cibaria KACC 11862] Length = 494 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 152/375 (40%), Gaps = 23/375 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I AL +N + L+ R AVVK NAYG G +I A AGV F V Sbjct: 130 RRPSWLEISAEALAHNVAYVRELTETNRFFAVVKANAYGHGLPQIVTAAKRAGVDGFAVA 189 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++EGV LR + + I +L + +LIPV++S L ++ + Sbjct: 190 TIDEGVWLRQFGVKLPILILGVTPATYVADLAKYDLIPVVASETWLDDALSQLNSEATLT 249 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++ VDTG R+G+ + E I H A AD + QL ++ Sbjct: 250 VSVAVDTGMGRIGIRDRTELERVVAKLNAADNVVFQGIGMHFATADGNDTVYFEKQLAKW 309 Query: 183 RTLISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVVT 237 L I LA+S L R G ++YG + +Q V++ Sbjct: 310 HELTDELDLPADIWRHLANSGTSLWHEQPSTDAVRVGAAMYGFDASQGALPNRELQPVLS 369 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A ++ +++ AG +SYG T I +GYADGYP L G+D Sbjct: 370 LKAELVHVKQVPAGTSISYGATYTTTEPEWIGTVPVGYADGYPRALQGMDVL-------- 421 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G ++G+I MD M + + + + G + + G +I L D+A T Sbjct: 422 ---LPDGRRAELVGRIAMDQFMIRLPEEMPV--GTVVTLIGQVGDEEITLVDLANKMDTI 476 Query: 354 NYDLLVRIGTRYAKF 368 Y++ + R + Sbjct: 477 PYEIATGLSPRLPRH 491 >gi|152980345|ref|YP_001353215.1| alanine racemase [Janthinobacterium sp. Marseille] gi|166968413|sp|A6SY68|ALR_JANMA RecName: Full=Alanine racemase gi|151280422|gb|ABR88832.1| alanine racemase [Janthinobacterium sp. Marseille] Length = 359 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 18/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ID+ AL++N A + +++ AVVK NAYG G E+ + Sbjct: 3 RPLIATIDIAALRSNLALAKARAPHSKAWAVVKANAYGHGLERGMRGFAA--ADGLGLIE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++ +LR RI +L G + + + + + + + Sbjct: 61 LDAAARLRELGWNKRILLLEGFFDASDTKLLAEHRLDTVIHCEEQLLMLEQAKLRTQIDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV--NSVQLERF 182 L++++G NRLG + + ++H A A+DP + V Q+ RF Sbjct: 121 HLKLNSGMNRLGFTPARYRAAYERLRAIPAVRHISFVTHFANAEDPDNPVLPVQEQVRRF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240 + G E SLA+S+ LL P RPGI LYG T + + ++ ++ + Sbjct: 181 KEATRDLPG-EKSLANSATDLLHPAAAADWIRPGIMLYGATPGAQSAEQFGLRAAMSLHS 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ +AG+ V YG T I V A GYADGYP G Sbjct: 240 EIIGVQHIVAGDAVGYGSAFVATAPMTIGVVACGYADGYPRHA-----------PSGTPV 288 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G ++G+++MDM D+T +G + ++G + +D+VA A+GT Y+L+ Sbjct: 289 IVDGVKTRMVGRVSMDMITVDLTPVAKPRIGSKVTLWGASLPIDEVANAAGTVGYELMCG 348 Query: 361 IGTRY 365 + R Sbjct: 349 LAPRV 353 >gi|168237864|ref|ZP_02662922.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736004|ref|YP_002114836.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711506|gb|ACF90727.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289280|gb|EDY28647.1| alanine racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 356 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRTMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|44805037|gb|AAS47779.1| racemase [Clostridium innocuum] Length = 383 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 148/388 (38%), Gaps = 29/388 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + SN L+IDLT + +N + L + + A+VK N YG G + + + G+ Sbjct: 5 LKSNTPSWLEIDLTRISHNIKEVQKLIPSTSKIMAIVKANGYGHGDVECSRMMEQQGIDF 64 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F V+SV+EGV+LR Q+ I VL P + + +LI + S + Sbjct: 65 FGVSSVDEGVRLRENGIQSPILVLGYTPPVHFHYLNEASLIQTLVSKEYAEKLNAYAKEQ 124 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA------CADDPSS 172 V +V+TG +R+G+S + + S + + + C D+ + Sbjct: 125 NVVVKAHAKVNTGMSRIGISHRIMHIISRISKALVRLKHLNVSGIFSHFSVSDCLDEENC 184 Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGP----NYHFQLTRPGISLYGGTDKINK 228 + Q+ F +++ + + L RPG+ G ++ Sbjct: 185 AFTNHQIALFERVLADLRPEGLTPVQRICRQLWNFKLSEPALDYVRPGLLWMGVPAMMHW 244 Query: 229 SHPMQTVVTAEARIILIRK---ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + A + + +A A+GYADG+P ++S Sbjct: 245 QFARHRSFSPHGMEGKCFPGKGYSARCYGQLRPSFQAEVCTRVATLAVGYADGFPRSVSN 304 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----I 341 G + G VPI+G I MD M DIT + GD + G D + Sbjct: 305 Q----------GACVLLHGRRVPIIGNICMDQMMVDITGLDGVSEGDVATLIGCDGDEVL 354 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +D+++ + T N + L I R + Y Sbjct: 355 SVDELSRLAHTINNETLCWISQRVPRIY 382 >gi|296532301|ref|ZP_06895040.1| alanine racemase [Roseomonas cervicalis ATCC 49957] gi|296267377|gb|EFH13263.1| alanine racemase [Roseomonas cervicalis ATCC 49957] Length = 370 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 117/363 (32%), Positives = 171/363 (47%), Gaps = 21/363 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL A+ NW + A + A VVK + YGLG +A AL AG + FFV Sbjct: 26 AELLVDLGAIVANWRDLAARHASGPVAGVVKADGYGLGAAPVARALAAAGCRHFFVAQFA 85 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG+ LR + + G P D + + ++ + G L Sbjct: 86 EGLALRQALGHGPMVAVLGGFPPGADDGADLTPV-----LNAPADLAEARAAGRRGAI-L 139 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 DTG RLGL+ E + L +++HLACAD+P +N+ Q RF + Sbjct: 140 HADTGMERLGLNAAELAAA----GDLSDLGLRYVMTHLACADEPGHPLNAQQAARFAAVR 195 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + G+ AS A+SSG+ LG + L RPG +LYG + +PM+ V+ I+ +R Sbjct: 196 AGLPGLPASFANSSGLFLGEGFASDLARPGCALYGINPTPGQPNPMRPVLRLTVPILQLR 255 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + AG V YG RDS IA A GYADGY LS G + G Sbjct: 256 EVPAGTSVGYGASWVAKRDSRIATIAAGYADGYLRVLSNQ-----------GVATLHGQD 304 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 VP++G+++MD+ D+TD+ GD +++ GP D VA +GT Y++L +G RY Sbjct: 305 VPLVGRVSMDLITLDVTDAPEARPGDRVELIGPRQTPDAVAALAGTIGYEILTSLGARYR 364 Query: 367 KFY 369 + Y Sbjct: 365 RRY 367 >gi|251783257|ref|YP_002997562.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391889|dbj|BAH82348.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 366 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 157/381 (41%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ RT AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQENIPLGVRTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + ++S+ L + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAITRQVTVTVASLEWLAMAKQEWP 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+GL +D ++ I +H A AD+ + Sbjct: 120 DLKGLKVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMRAEVEGIFTHFATADEADTVKFEQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QL F L+ + + +S+ L F R GI +YG ++ P+ Sbjct: 180 QLTFFTNLVDQLADKPSLVHASNSATSLWHSETIFNAVRLGIVMYGLNPSGSELALPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + E+ ++ +++ GE V YG K + IGYADG+ + G Sbjct: 240 KEAFNLESVLVHVKEIAPGETVGYGATYKAQTSEYVGTVPIGYADGWTRDMQGFT----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 ++G I+G+++MD + + + G + + G D I D+A Sbjct: 295 -------VLVEGQPCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRVPRVY 366 >gi|78058366|gb|ABB17545.1| VanTG2 [Enterococcus faecalis] Length = 712 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 107/373 (28%), Positives = 167/373 (44%), Gaps = 29/373 (7%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL L++N + + AVVK AYG G +IA L GV+ F V +++E Sbjct: 347 LEIDLNNLEHNVKVLKRAMPQKCELMAVVKAEAYGHGLYEIATHLNKIGVKAFAVATIDE 406 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G+KLR Y I +L P + K + +L ++ + L G ++ Sbjct: 407 GIKLRQYGVLGEILILGYTAPARAKELRKYDLTQ---TLIDYKYALLLDKQGYDVMTHIK 463 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA--CADDPSSHVNSVQLERFRTL 185 VDTG +RLG ++ + K + + A D+ +VQ+E F L Sbjct: 464 VDTGMHRLGFDAKDIEKISAVFSMKHIKVSGIYTHLCAADSVDEKDIFFTNVQIESFYNL 523 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVV 236 ++ K + + SS G+L P R G+SLYG N ++ V+ Sbjct: 524 LNQLKEKGITIPKIHIQSSYGLLNYPELKCDYVRVGVSLYGVLSSPNDRTKLHLDLRPVL 583 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + ++R+IL+R+ GE V Y RDSLIA+ +GYADGYP LS Sbjct: 584 SLKSRVILLREIKKGESVGYSRSFVANRDSLIALLPVGYADGYPRNLS----------CG 633 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 I G+ P++GKI MD D+TD +++ G + G +I VA ++ + Sbjct: 634 KSYVLINGHQAPVVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAES 693 Query: 353 TNYDLLVRIGTRY 365 +LL R+G R Sbjct: 694 ITNELLSRMGHRL 706 >gi|317507715|ref|ZP_07965420.1| alanine racemase [Segniliparus rugosus ATCC BAA-974] gi|316253968|gb|EFV13333.1| alanine racemase [Segniliparus rugosus ATCC BAA-974] Length = 386 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 102/390 (26%), Positives = 167/390 (42%), Gaps = 36/390 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S ++ +D +AL +N + S A+ AV+K NAYG G +A + AG Sbjct: 1 MVSAPAVQATVDHSALAHNVRLLIQASAPAKVIAVLKANAYGHGAVPVARTVLAAGAAQI 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP------VISSVPQLTFYSK 114 V +++E +LR +A I E + + V +S Sbjct: 61 GVATLDEAFELRAGGIEAPIIAWLHAFDPSEAVAVFAEAVALGIELGVSTSTQLRAVAEA 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPS 171 M A++VDTG NR G + ++ + N + ++ + SHLA AD P Sbjct: 121 AMRADEPAVVAVKVDTGLNRGGFAREDWRKAFADLANAEAAGAVRVRAVFSHLANADRPE 180 Query: 172 SHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNY------HFQLTRPGISLY 220 N+ Q R + + LA+S +L P F TRPG+++Y Sbjct: 181 YRTNAEQASGLRDAVALARKAGLSPQLVHLANSPAVLTRPRALVDGVPAFNATRPGVAVY 240 Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280 G + + + +T AR+ L+++ AG+ VSYG D+ +A+ IGYADG P Sbjct: 241 GLSPIAGRDFGLIPAMTLTARVGLVKRIQAGDGVSYGHDFVAPTDTTLALLPIGYADGLP 300 Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP 339 +L+G + I G P +G++ MD + D+ + GD +FG Sbjct: 301 RSLAGKF-----------EVVIGGRRYPGVGRVCMDQVLVDLGPGRPRVREGDIATLFGS 349 Query: 340 ----DIKLDDVALASGTTNYDLLVRIGTRY 365 + +DD A A+GT NY+++ +I R Sbjct: 350 GKDGEQTVDDWAKAAGTINYEIVTQIRGRV 379 >gi|83953866|ref|ZP_00962587.1| alanine racemase [Sulfitobacter sp. NAS-14.1] gi|83841811|gb|EAP80980.1| alanine racemase [Sulfitobacter sp. NAS-14.1] Length = 344 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 191/364 (52%), Gaps = 26/364 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A+ NW ++N ++G T AV+K NAYGLG +++AP L G + FFV E Sbjct: 4 ATLSIDLNAIAANWQALNKMTG-CDTGAVIKANAYGLGIDRVAPVLAAQGARKFFVAVAE 62 Query: 67 EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I V G PG +I L P+I+SV Q+ + H + Sbjct: 63 EGVALRRVLGPGPAINVFAGHMPGDADMIRSAALTPMINSVDQM---IAHVEALPGHRFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+++G NRLG+ E + + +LI+SHLACAD+P+ +N+ QL+ FR + Sbjct: 120 VQLNSGMNRLGMDPAEWAALRDIALAQ---NPTLIMSHLACADEPNHPMNARQLKTFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SLA++ GI+LG +YHF LTRPGI +YGG + VVT + +I + Sbjct: 177 TDG-LNVPRSLAATGGIMLGRDYHFDLTRPGIGVYGGLPFADA----MPVVTLDVPVIQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ G+ V YG R +++A A GYADG L + +G Sbjct: 232 REVATGQTVGYGCAWTAPRPTMVATVAAGYADGLIRALGNGATFTH-----------EGR 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +P++G+++MD+ D+T + ++Q+ G +D VA +GT Y++L +G RY Sbjct: 281 KLPVVGRVSMDLITVDVTSLTEVPE--HLQLIGNYQSVDTVAGFAGTIGYEVLTALGARY 338 Query: 366 AKFY 369 + Y Sbjct: 339 DRVY 342 >gi|238897886|ref|YP_002923565.1| alanine racemase 1, PLP-binding, biosynthetic [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259710068|sp|C4K4C4|ALR_HAMD5 RecName: Full=Alanine racemase gi|229465643|gb|ACQ67417.1| alanine racemase 1, PLP-binding, biosynthetic [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 358 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 104/363 (28%), Positives = 170/363 (46%), Gaps = 18/363 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 I+L +L++N + + +R AVVK NAYG G +A AL N F V +E Sbjct: 4 ATAIINLKSLRHNLEKIQQYAPKSRLMAVVKANAYGHGLLTVAQALKN--ADYFSVARIE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ + N I + + + + + Sbjct: 62 EALTLRSGGIIKPILLLEGFFSLEDLAVLQVNHIETVIHNFEQLVALEKVRLPEPVRVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ L++A F N + II+HL+ + V Q+ F Sbjct: 122 KIDTGMHRLGVRLEQADAFYQRLQNCPNVAKPIHIITHLSDVNPHHPVVTDQQIRSFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARI 242 + G + S+A+S ILL P H + RPGI+LYG + I + + + V+T ++ + Sbjct: 182 VQGKPG-QKSIAASGAILLCPQSHRDVVRPGIALYGISPFEHFIGRDYGLLPVMTLQSPL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V Y G+ + + V AIGY DGYP + G +I Sbjct: 241 IAVREHKAGETVGYAGEWISQTATFLGVLAIGYGDGYPQSA-----------PTGTPVWI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 VPI+G+++MDM D+ + +VGD ++G + L+ VA G T Y+L+ ++ Sbjct: 290 NDRQVPIVGRVSMDMISVDLGRDATDKVGDRAVLWGDQLSLEKVASYIGYTAYELVSKLT 349 Query: 363 TRY 365 R Sbjct: 350 GRV 352 >gi|251812207|ref|ZP_04826680.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060] gi|282876517|ref|ZP_06285383.1| alanine racemase [Staphylococcus epidermidis SK135] gi|251804304|gb|EES56961.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060] gi|281294769|gb|EFA87297.1| alanine racemase [Staphylococcus epidermidis SK135] Length = 382 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 158/382 (41%), Gaps = 30/382 (7%) Query: 3 SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R ++L A+ N+ + N L N +V+K N YGLG KIA L G Sbjct: 2 SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A++ VL + + + + S T Sbjct: 62 FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G+ + E + + + +H A AD+P + +N Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGNSMN- 180 Query: 177 VQLERFRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 Q F+ +++ K I +S+G LL R GISLYG N Sbjct: 181 EQYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ AGE VSYG + IA+ IGYADGY ++ Sbjct: 241 LRPSAQLVSETVQVKTLKAGETVSYGRTYIADEEMTIAILPIGYADGYLRSMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G + G ++G+I MD + + ++ G+ + + + VA Sbjct: 294 -----GAFVNVNGSQCEVIGRICMDQLIVKVP--SHVKTGEKVILMDNHVDSPQSAEAVA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368 >gi|213964899|ref|ZP_03393098.1| alanine racemase [Corynebacterium amycolatum SK46] gi|213952435|gb|EEB63818.1| alanine racemase [Corynebacterium amycolatum SK46] Length = 537 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 100/393 (25%), Positives = 168/393 (42%), Gaps = 37/393 (9%) Query: 1 MHSNEFLRLK--IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M S+ L ++L A+ +N ++ A++G + AVVK + Y G + A A + G Sbjct: 1 MTSSAPAILTHTVNLDAITHNVKTVKAIAGVSEFMAVVKADGYSQGALQTARAALDGGAT 60 Query: 59 DFFVTSVEEGVKLRLY-------TPQARIFVLYGIHPGQ---EKIIFDTNLIPVISSVPQ 108 V +++E + +R I ++ + + + S Sbjct: 61 QLGVATIDEALSVREELRTTLDDGHAIPILAWIWDAAATSLVQRAVAANIDLGLPSMAHA 120 Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSL-----QEALDFTHNSFNKKLGQLSLIISH 163 L + + V+ + VDTG R G S+ + A+ ++ +H Sbjct: 121 LAVANAGRALSVTPRVTVMVDTGLGRSGFSMANGDFEHAVAQLVELHKTGALNITGAFTH 180 Query: 164 LACADDPSSHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGIS 218 ACAD+P + Q + FR I + + A+S L P+ F + RPG++ Sbjct: 181 FACADEPGNESVDKQAQNFRAAIAALREAGLDELINHAANSPASLSRPDLAFDMVRPGLA 240 Query: 219 LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 +YGG + +H ++ + EA +IL++K AG+ VSYG RD+ I + GYADG Sbjct: 241 IYGGEPIVGSTHGLRPAMRWEASVILVKKLPAGQSVSYGQTWTADRDTTIGIVPCGYADG 300 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 + SG + I G P +G++ MD + D+ +EVGD I G Sbjct: 301 MMRSASGRF-----------EVSINGTRYPQVGRVCMDQFVVDLGPDTDVEVGDTAVIVG 349 Query: 339 P----DIKLDDVALASGTTNYDLLVRIGTRYAK 367 + LDD+A ASGT NY++L R + Sbjct: 350 DPTLGEPGLDDLAKASGTINYEILTAPKGRSER 382 >gi|271962687|ref|YP_003336883.1| alanine racemase [Streptosporangium roseum DSM 43021] gi|270505862|gb|ACZ84140.1| Alanine racemase [Streptosporangium roseum DSM 43021] Length = 371 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 142/380 (37%), Gaps = 28/380 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++DL+A+++N + + A VVK + YG G A G + Sbjct: 3 PAEARVDLSAIRDNVALLGEHAPGAEIMVVVKADGYGHGMAACGRAALEGGATRLGTAYI 62 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124 E ++LR A I + + + + GV+ Sbjct: 63 REALELRAAGVTAPILSWIIPPGEPLDEAVGQGVELSAGTPALVDEIAAAAGRTGVAARV 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLER 181 L+ DTG R G + + + ++ + SH ACAD P QL Sbjct: 123 HLKADTGLARGGAAPADWPALVDRAMARQFEGTIEVAGLWSHFACADIPGHPSVHAQLTA 182 Query: 182 FRTLI-------SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQ 233 F + + + +A+S+ +L P H+ + RPG++ YG + ++ Sbjct: 183 FDDALAIAEKAGAGGSHVIRHIANSAATMLLPQAHYDMVRPGLATYGLSPVPELGGFGLR 242 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T ARI L ++ G VSYG R++ + + +GYADG + + Sbjct: 243 PAMTLVARIALAKRVPVGSGVSYGHLYVTERETTLGLVPLGYADGILRHATNRAEVLAGG 302 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G + MD + D+ D + GD + +FG + + A + Sbjct: 303 RRRRIAGR-----------VCMDQFVIDVGDDP-LAEGDEVILFGDGSRGEPTAQEWADS 350 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT ++++ RIG+R + Y Sbjct: 351 LGTITHEIVTRIGSRVPRVY 370 >gi|27468592|ref|NP_765229.1| alanine racemase [Staphylococcus epidermidis ATCC 12228] gi|57867600|ref|YP_189248.1| alanine racemase [Staphylococcus epidermidis RP62A] gi|293366041|ref|ZP_06612729.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)] gi|38372172|sp|Q8CNK7|ALR_STAES RecName: Full=Alanine racemase gi|81673927|sp|Q5HME5|ALR_STAEQ RecName: Full=Alanine racemase gi|27316139|gb|AAO05273.1|AE016749_219 alanine racemase [Staphylococcus epidermidis ATCC 12228] gi|57638258|gb|AAW55046.1| alanine racemase [Staphylococcus epidermidis RP62A] gi|291319764|gb|EFE60122.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734113|gb|EGG70431.1| alanine racemase [Staphylococcus epidermidis VCU045] Length = 382 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 157/382 (41%), Gaps = 30/382 (7%) Query: 3 SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R ++L A+ N+ + N L N +V+K N YGLG KIA L G Sbjct: 2 SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A++ VL + + + + S T Sbjct: 62 FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G+ + E + + + +H A AD+P S +N Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGSSMN- 180 Query: 177 VQLERFRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 Q F+ +++ K I +S+G LL R GISLYG N Sbjct: 181 EQYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ GE VSYG + IA+ IGYADGY ++ Sbjct: 241 LRPSAQLVSETVQVKTLKVGETVSYGRTFIADEEMTIAILPIGYADGYLRSMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G + G ++G+I MD + + ++ G+ + + + VA Sbjct: 294 -----GAFVNVNGSQCEVIGRICMDQMIVKVP--SHVKTGEKVILMDNHVDSPQSAEAVA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368 >gi|329726098|gb|EGG62570.1| alanine racemase [Staphylococcus epidermidis VCU144] Length = 382 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 91/382 (23%), Positives = 157/382 (41%), Gaps = 30/382 (7%) Query: 3 SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R ++L A+ N+ + N L N +V+K N YGLG KIA L G Sbjct: 2 SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A++ VL + + + + S T Sbjct: 62 FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G+ + E + + + +H A AD+P S +N Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGSSMN- 180 Query: 177 VQLERFRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 Q F+ +++ K I +S+G LL R GISLYG N Sbjct: 181 EQYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ GE VSYG + IA+ IGYADGY ++ Sbjct: 241 LRPSAQLVSETVQVKTLKVGETVSYGRTFIADEEMTIAILPIGYADGYLRSMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G + G ++G+I MD + + ++ G+ + + + VA Sbjct: 294 -----GAFVNVNGSQCEVIGRICMDQMIVKVP--SHVKTGEKVILMDNHVDSTQSAEAVA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368 >gi|328478057|gb|EGF47943.1| alanine racemase [Lactobacillus rhamnosus MTCC 5462] Length = 379 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 152/379 (40%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SSV L ++ P Sbjct: 67 LLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQTVSLPLSSVDWLKQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + +DTG R+G + + + K + I +H A ADDP Q Sbjct: 127 PLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDDAYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 + +F +++ + +S+ L + + R G+++YG + P+ Sbjct: 187 VAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDAIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + D I +GYADG+ L G Sbjct: 247 EPALSLESELTFCKQVHAGDGISYGVTYRAKGDEFIGTVPVGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G+ I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGHPCEIVGRICMDQFMIRLPKAYPA--GTKVVLIGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + +R + Sbjct: 353 YSHTIHYEIACNLTSRLKR 371 >gi|204927774|ref|ZP_03218975.1| alanine racemase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323116|gb|EDZ08312.1| alanine racemase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 356 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGAILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERVQTVWQQLRTMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|295094258|emb|CBK83349.1| alanine racemase [Coprococcus sp. ART55/1] Length = 377 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 159/383 (41%), Gaps = 25/383 (6%) Query: 1 MHSNEFL-R--LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M++ F R IDL L++N ++ L AV+K + Y G + P L G Sbjct: 1 MNNRPFAGRTAAVIDLAKLRSNIANIKSRLKPGVEFIAVMKGDGYRHGIAGLYPTLKECG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKL 115 + + V EEG LR I +L +L + S+ + Sbjct: 61 IDSYAVAIWEEGKMLRDAGATESILILGDTADDMLDEAAKYDLDLTVFSMEGAENMAAAA 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G ++++TG NR+G QE+ D ++ I +H A AD+ Sbjct: 121 RRAGKKQNVQIKLNTGMNRIGFPVCQESFDTIKKICEMDDLNVTGIFTHFARADEGDHTS 180 Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-- 227 QL+ + ++ + + + +A+S IL+ P R G LYG T + Sbjct: 181 ARKQLDLYLHAVNELEKMGVVIPKHHVANSPAILMLPEAQLDAVRCGDILYGLTPSDDFD 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 K+ +Q +++ + ++++ G + YGG R + IA +G+ADGY LS Sbjct: 241 WKNSGLQEILSWYTYVAMVKEVPTGSEIGYGGTFVTERPTKIATLPVGFADGYSRYLSN- 299 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 GK I G+ PI+G++ MD M D+TD ++ GD + + G + ++D+ Sbjct: 300 ----------KGKVIINGHEAPIIGRVCMDQCMADVTDIPDVQRGDTVTLLGEGMSIEDM 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T ++ I R + Y Sbjct: 350 ANMLDTNVDVIVCNISVRVPRVY 372 >gi|260426149|ref|ZP_05780128.1| alanine racemase [Citreicella sp. SE45] gi|260420641|gb|EEX13892.1| alanine racemase [Citreicella sp. SE45] Length = 351 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 186/365 (50%), Gaps = 26/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +L IDL A++ NW ++ + AVVK + YGLG ++APAL G + FFV + Sbjct: 10 AQLTIDLAAIRANWRALANATTG-EAGAVVKADGYGLGVARVAPALAAEGARRFFVATAH 68 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG+ +R I V G G +II D L P+++S+ Q+ + + H + Sbjct: 69 EGIAVRRALGAGPEICVFSGHMNGDAEIIRDHRLTPMLNSIDQML---RHVEALPGHSFG 125 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + + + LI+SHLACAD+PS +N+ QL FR + Sbjct: 126 IQLDSGMNRLGMEPAEWSALREIALAQ---KPVLIMSHLACADEPSHGMNAFQLRTFREM 182 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SL+++ GILLGP+YHF+LTRPG+ +YGG + + VV +I + Sbjct: 183 TDG-LDVPRSLSATGGILLGPDYHFELTRPGVGIYGGQPFADA----RAVVELMLPVIQV 237 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG + +A A GYADG L G + Sbjct: 238 RDVAPGESVGYGNAHVARVPTRVATVAAGYADGIHRAL-----------AAKGAVWAGDT 286 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 I+G+++MD+ D+T +V + +++ G +D VA A GT Y++L +G RY Sbjct: 287 RCKIIGRVSMDLITVDVTALN--KVPEQLELLGRHQTVDMVADAVGTIGYEILTGLGARY 344 Query: 366 AKFYT 370 A+ YT Sbjct: 345 ARAYT 349 >gi|85710981|ref|ZP_01042042.1| Alanine racemase [Idiomarina baltica OS145] gi|85695385|gb|EAQ33322.1| Alanine racemase [Idiomarina baltica OS145] Length = 384 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 172/376 (45%), Gaps = 22/376 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R +I LT L++N + + V+K + YG G ++A A+ + V+ + V Sbjct: 19 HRQTRARILLTNLRDNAKQLKSYIDQQPMLGVIKADGYGHGATEVAHAITDY-VEKYAVA 77 Query: 64 SVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR I +L G + + PVI + Q+ S++ S Sbjct: 78 FIDEAIALRGSGIDKPIVILQGVYSTEDWLLCAEQQFEPVIHNAQQIDCLSEITSEANRV 137 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ D+G +RLG + L ++++H A AD+P S + ++QLERF Sbjct: 138 NVWLKQDSGMHRLGFFADDVEGAVGQLRAHALINQIVLMTHFAEADNPESPLTAIQLERF 197 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQ------LTRPGISLYGGTDK---INKSHPMQ 233 ++ + ++ ++ + + R GI+LYG + + ++ Sbjct: 198 YAVLHAVRDKIDGVSVANSAFMLGDDVLDAMGLTKWFRAGIALYGQNPSQADLTDNVELK 257 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + EA +I +R GE V YG + + R+S IA AIGYADGYP +L Sbjct: 258 PTMALEAPVIALRIIQPGETVGYGSRWRAQRESRIATVAIGYADGYPRSL---------- 307 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G I G + ++G+I+MDM D+TD IE+GD ++++G + + +A + T Sbjct: 308 -PDGTPMIINGQVGCLVGRISMDMITVDVTDIEGIELGDNVELWGEQLPIQVIADQARTI 366 Query: 354 NYDLLVRIGTRYAKFY 369 Y+L ++ R + Y Sbjct: 367 TYELFAQVTRRVPRVY 382 >gi|254514051|ref|ZP_05126112.1| alanine racemase [gamma proteobacterium NOR5-3] gi|219676294|gb|EED32659.1| alanine racemase [gamma proteobacterium NOR5-3] Length = 356 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 88/367 (23%), Positives = 153/367 (41%), Gaps = 17/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +I + +N + L+ ++R A VK +AYG I+ A V F V S Sbjct: 3 RPTYARIFPEHIAHNARRVRELAPDSRIMACVKSDAYGHDIG-ISSAALADHVDGFAVAS 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + +R + +L G E + + + + + + G Sbjct: 62 MNEALSVRSLHADKPVLMLEGPQTFDEIAEAAHKKLTLCINEWHQLEWLERSAPG-ELSC 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG +RLG S + ++ +H + AD P + S QL F Sbjct: 121 WMKIDTGMHRLGFSPESVPQALARLTPHIKTSDLVLCTHFSSADLPGDNGVSEQLRCFDE 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEAR 241 + ++ +S+ I+ H RPG LYGG+ S ++ + A Sbjct: 181 STAQTSFAHSTA-NSAAIIRTATSHRDWVRPGYMLYGGSPLADATPASVNLKPAMEFSAE 239 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ GE V Y G+ + R S IA A GY DGYP G Sbjct: 240 VISLRELAQGERVGYSGRWEARRPSKIATIAAGYGDGYPRHA-----------PDGTPVL 288 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I+G +P+ G+++MDM D+TD+ ++++G ++G +D++A S T Y+LL + Sbjct: 289 IEGQCLPLAGRVSMDMITVDVTDNPAVKIGSRAILWGAQPGVDEIARHSSTIGYELLAGM 348 Query: 362 GTRYAKF 368 R + Sbjct: 349 PKRVPRI 355 >gi|82703234|ref|YP_412800.1| alanine racemase [Nitrosospira multiformis ATCC 25196] gi|123544120|sp|Q2Y763|ALR_NITMU RecName: Full=Alanine racemase gi|82411299|gb|ABB75408.1| alanine racemase [Nitrosospira multiformis ATCC 25196] Length = 357 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 165/369 (44%), Gaps = 18/369 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ ID AL+ N + + +R AV+K +AYG G A A + F + Sbjct: 2 SRPIQALIDPAALERNLAIVRRHAPRSRVMAVIKADAYGHGLLC--AAEALAEAEGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++ V+LR + I +L G E + + + P+ + + + Sbjct: 60 ELDAAVRLREAGYRQTILLLEGFFDIDELSWIEQYRLSTVVHHPEQLAMLEAVRRRATLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182 L++++G NRLG + E + + +++H ACAD+P + + QL+ F Sbjct: 120 VFLKLNSGMNRLGFTPTEFPAALEHLKANPAVRQITLMTHFACADEPDRNDSIAAQLQCF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 L + + + SLA+S+ IL P H RPGI LYG + + +Q +T Sbjct: 180 N-LAAGGRYMPRSLANSAAILRFPEAHADWVRPGIMLYGSSPLAHTTAEQLGLQPAMTVS 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +RII ++ + V YG + + + A GYADGYP G Sbjct: 239 SRIISVQTLRPNDGVGYGHAFRAGSSMRVGIVAGGYADGYPRHA-----------PTGTP 287 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 +KG I+G+I+MDM D+++ VG + ++G + +D+VA A+GT Y+LL Sbjct: 288 VLVKGRRTRIVGRISMDMLHVDLSEIEDAGVGSPVTLWGRGMPVDEVARAAGTLGYELLC 347 Query: 360 RIGTRYAKF 368 I R + Sbjct: 348 AIAPRMQRV 356 >gi|15827104|ref|NP_301367.1| alanine racemase [Mycobacterium leprae TN] gi|221229582|ref|YP_002502998.1| alanine racemase [Mycobacterium leprae Br4923] gi|584747|sp|P38056|ALR_MYCLE RecName: Full=Alanine racemase gi|467127|gb|AAA17309.1| alr [Mycobacterium leprae] gi|13092652|emb|CAC29883.1| putative alanine racemase [Mycobacterium leprae] gi|219932689|emb|CAR70468.1| putative alanine racemase [Mycobacterium leprae Br4923] Length = 388 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 159/379 (41%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+ N + +G A+ V+K +AYG G ++A A AG + V +V Sbjct: 13 LAEAVVDLGAIDYNVRVLREHAGMAQLMVVLKADAYGHGATQVALAALAAGAAELGVATV 72 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 +E + LR A + ++ +SSV Q + G + Sbjct: 73 DEALALRADGISAPVLAWLHPPGIDFGPALLADVQIAVSSVRQLDELLDAVRRTGRTATV 132 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLER 181 ++ DTG NR G+ + + ++SHL AD P + N VQ +R Sbjct: 133 TVKADTGLNRNGVVTDQYPAMLTALQRAVVEDAVRLRGLMSHLVYADQPDNPSNDVQGKR 192 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F L++ A L++SS + P+ + L RPGI++YG + ++ + Sbjct: 193 FAALLAQAHEQGLRFEVAHLSNSSATMSRPDLAYDLVRPGIAVYGLSPVPSRGDMGLIPA 252 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + +++ AGE VSYG D+ +A+ +GYADG +L G Sbjct: 253 MTVKCAVAMVKSIRAGEGVSYGHDWIAQHDTNLALLPVGYADGVFRSLGGRLD------- 305 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDVALAS 350 I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 306 ----VLINGKRRPGVGRICMDQFVVDLGPGPIDVAEGDEAILFGPGARGEPTAQDWADLL 361 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ + R + Y Sbjct: 362 GTIHYEVVTSLRGRITRTY 380 >gi|58336608|ref|YP_193193.1| ala racemase [Lactobacillus acidophilus NCFM] gi|227903165|ref|ZP_04020970.1| ala racemase [Lactobacillus acidophilus ATCC 4796] gi|81311540|sp|Q5FMB2|ALR_LACAC RecName: Full=Alanine racemase gi|58253925|gb|AAV42162.1| ala racemase [Lactobacillus acidophilus NCFM] gi|227868970|gb|EEJ76391.1| ala racemase [Lactobacillus acidophilus ATCC 4796] Length = 376 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 147/382 (38%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A++ N + M L + AVVK NAYG G ++A G F V Sbjct: 6 HRPAAVKVNLGAIRRNLENEMKHLDPGQKMLAVVKANAYGHGAVEVAKVAEEVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVS 121 ++EG++LR I VL + P I + + V + L + Sbjct: 66 AVLDEGLQLRHADIVKPILVLGVVSPKYAPIAAVNNISLTVPNFEWLKEAEKYLAKENLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + + +H A AD QLE Sbjct: 126 LKIHLGIDSGMGRIGFNEDDEFIEANKFLENNDQFFVEGMFAHFASADSADESYFEHQLE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------INKSHP 231 +F + S + +++ + N L R GI +YG +N Sbjct: 186 KFNHMKSLLTVKPKWIHVSNTAASIFHKNIKSDLVRFGIGIYGLNPSSNPASADLNPDIK 245 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ E+ + ++ G+ VSYG +D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHKGDGVSYGSTFVADKDTIIGTVPVGYADGWIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347 K + PI+G+I MD M ++ + + + G + I + + A Sbjct: 301 -------KVKVGDKYCPIVGRICMDQFMVELPEKMPV--GTKVVIISNNPDDPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVNTIHYEVACLLNDRLPRIY 373 >gi|84502660|ref|ZP_01000779.1| alanine racemase [Oceanicola batsensis HTCC2597] gi|84389055|gb|EAQ01853.1| alanine racemase [Oceanicola batsensis HTCC2597] Length = 343 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 188/363 (51%), Gaps = 25/363 (6%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + +DL AL NW +++A S T AV+K N YGLG + +A AL AGV+ FFV EE Sbjct: 1 MTVDLDALVANWRALDAASSPETETGAVIKANGYGLGVQPVARALARAGVRRFFVAVAEE 60 Query: 68 GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G +R P I V G G +I D NLIP+++SV Q+ + + HP + Sbjct: 61 GAAVREAVGPNVEINVFSGHMRGDTDMIGDLNLIPMLNSVDQML---RHVEALPGHPLGI 117 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG NRLG+ +E + + + LI+SHLACAD+P +N QL +F+ + Sbjct: 118 QLDTGMNRLGMEPEEWMAVRETALDLSPN---LIMSHLACADEPDHPMNIRQLRQFKAMT 174 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 S G+ SLA++ GILLGP YHF +TRPG+ L+GG + VV + +I IR Sbjct: 175 SGLGGVPLSLAATGGILLGPEYHFDVTRPGVGLFGGLPFADAE----PVVRLDLPVIQIR 230 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + AGE V YG ++IA A GYADG + S ++ Sbjct: 231 ELEAGETVGYGNTWTAPDRTVIATVAAGYADGIHRLMGPRTSLYA-----------GDTP 279 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 P+ G+I+MD+ DIT G + + GP +D +A + T Y++L +G R + Sbjct: 280 CPVRGRISMDLIGVDITHLTEEPQG--LTLLGPQQTVDVIAENAQTIGYEVLTSLGGRMS 337 Query: 367 KFY 369 + Y Sbjct: 338 RRY 340 >gi|310778168|ref|YP_003966501.1| alanine racemase [Ilyobacter polytropus DSM 2926] gi|309747491|gb|ADO82153.1| alanine racemase [Ilyobacter polytropus DSM 2926] Length = 377 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 157/369 (42%), Gaps = 21/369 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 I+L L N + + +G+ + V+K + YG+G + A L GV++F V Sbjct: 2 RAWADINLDNLIYNLNIIKEFAGSKKIMCVIKADGYGMGAVECARILSENGVENFGVACY 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EEG +L + I +L ISS Q+ F + Sbjct: 62 EEGYELYKAGIKGEILLLGATPFENIADAVKCGFQITISSFEQIDFL---RRNNLHPEVH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRT 184 ++VDTG RLG S +EAL ++ + + + SHL+ AD P Q+E+F+ Sbjct: 119 IKVDTGMGRLGFSHEEALKAIKIIRDENIADIVGVYSHLSVADMPEKDQFTLDQIEKFKV 178 Query: 185 LISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKI-NKSHPMQTVVTAEARI 242 + +SSG+L + L R GI L+G + V + + +I Sbjct: 179 FEKMESIKYKHILNSSGLLRFADATESNLVRVGIILHGVVPFESELQKKFKPVFSFKTKI 238 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I + K VSYG + LIA A+GYADG+ S GG I Sbjct: 239 IFLNKITEKTYVSYGNTETAEPGDLIATMAVGYADGFVREFSN-----------GGIVEI 287 Query: 303 KGYMVPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 G ++GKI MDMTM I + ++VG + I G DI A GT Y++++ Sbjct: 288 DGVGCRVIGKICMDMTMIKIPEELKDKVQVGTEVTIIGKDIL--KKAECIGTIPYEIMIG 345 Query: 361 IGTRYAKFY 369 +G R A+FY Sbjct: 346 LGRRVARFY 354 >gi|225849897|ref|YP_002730131.1| alanine racemase [Persephonella marina EX-H1] gi|225644813|gb|ACO02999.1| alanine racemase [Persephonella marina EX-H1] Length = 359 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 106/370 (28%), Positives = 168/370 (45%), Gaps = 27/370 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVE 66 +ID L N H++ S AVVK +AYG G +I+ L + V+ V + E Sbjct: 6 WAEIDSKRLIQNTHNVYNYSKKG-ILAVVKADAYGHGSVEISKILEKISYVRKLCVATAE 64 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG +LR + I VL G+ + + NL PVIS QL S L Sbjct: 65 EGKELREGGIKKEILVLGGVLKEELDYFIEYNLQPVISDFDQLYLLKD----RFSGSVHL 120 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 + DTG +RLG +++ K ++ ++SH AD + Q+E+F+ ++ Sbjct: 121 KFDTGMHRLGFYIEDTDRVIKYIKEK-NIKVEGLMSHFPSADVDP-ELTGHQIEKFKKIV 178 Query: 187 ----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + +S L+ + R GISLYG N ++TV++ +++I Sbjct: 179 DIFKNEGINPRFIHIQNSAGLVYRCDYCNCVRVGISLYGEKPSDNFPLNIKTVMSVKSKI 238 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I ++ G++VSYGG K +D I + + GYADG P LS G + Sbjct: 239 ISVKGIKKGDMVSYGGSFKADKDMKIGIVSFGYADGLPRELSNR-----------GFFLV 287 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358 K ILG +TMDMT+ D++ ++VGD + I G +I +D+A T Y+++ Sbjct: 288 KDKRSRILGNVTMDMTIIDLSGIEDVKVGDTVLIVGKNGKEEISFNDIAKMCNTIPYEIM 347 Query: 359 VRIGTRYAKF 368 RI R + Sbjct: 348 CRISKRVKRI 357 >gi|123442531|ref|YP_001006508.1| alanine racemase, catabolic [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089492|emb|CAL12340.1| alanine racemase, catabolic [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 355 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 20/365 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++L+AL +N + + + G A+ +VVK NAYG G ++ L F + Sbjct: 3 RPISATLNLSALHHNLNVVRSHVGTAKIWSVVKANAYGHGLARVWQGLAA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G+ Q+ ++ D + K Sbjct: 61 LNEAILLREQGWQGPILLLEGVFQAQDLVLLDHYRLTTAVHSDWQLEVIKTARLTAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ ++G NRLG + +A + + ++SH A AD+P Q + + Sbjct: 121 YLKFNSGMNRLGFPIGQAEAVWQWANSLSNVGEITLMSHFANADNPIG--VDEQFAQIQQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 S + A+S+ IL PN H+ RPGI LYG + + ++ V+ + Sbjct: 179 -ASGHIPAARCFANSAAILRNPNTHYDWVRPGIILYGASPSGDIADIAGLGLRPVMGLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG+ V YG + + T I V A GYADGYP G Sbjct: 238 EIIALQSLSAGQSVGYGSRYRATGVQRIGVVACGYADGYPR-----------VAPTGTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T ++G ++I+G ++ +D+VA A+GT Y+L+ Sbjct: 287 MVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVPIDNVAQAAGTVGYELMCA 346 Query: 361 IGTRY 365 + +R Sbjct: 347 LASRV 351 >gi|134293333|ref|YP_001117069.1| alanine racemase [Burkholderia vietnamiensis G4] gi|134136490|gb|ABO57604.1| alanine racemase [Burkholderia vietnamiensis G4] Length = 373 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 154/364 (42%), Gaps = 21/364 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AV+K NAYG G E+I P L + Sbjct: 3 RPIVAHIRPDAVRHNLDFIRRTAARSRVWAVIKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + D + + V + Sbjct: 61 LDEAVRVRELGWDKPVLLLEGIFEPVDVELADRHRLTVAVHCDEQLDLLIAAQPQRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ H A AD+ + QL +F Sbjct: 121 QLKMNSGMNRLGYRPHLFRAAWERAAAAPSIGNITLMMHFANADEGE---VAWQLNQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 + G E S ++S+ +L P H RPG LYG + P+ +T + Sbjct: 178 ATAGIPG-ERSTSNSAAVLWHPQAHRDWVRPGTILYGASPTGASRHIADTPLMAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + + I V A GYADGYP G Sbjct: 237 KIIGVQTLAPQETVGYGRRFTAEQPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G M ++G+++MDM D+T + +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGVMTRVIGRVSMDMLTVDLTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCA 345 Query: 361 IGTR 364 + R Sbjct: 346 LARR 349 >gi|228474910|ref|ZP_04059639.1| alanine racemase [Staphylococcus hominis SK119] gi|314935973|ref|ZP_07843323.1| alanine racemase [Staphylococcus hominis subsp. hominis C80] gi|228271142|gb|EEK12522.1| alanine racemase [Staphylococcus hominis SK119] gi|313655979|gb|EFS19721.1| alanine racemase [Staphylococcus hominis subsp. hominis C80] Length = 381 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 157/376 (41%), Gaps = 26/376 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL A+ N++ L + V+K N YGLG KIA L N G Q F V + Sbjct: 7 RPTYLNVDLDAILYNYNIFKTLQSDKLVIPVIKANGYGLGSVKIAEILENNGAQFFAVAT 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E ++LRL+ A++ VL I P ++ + S L + H Y Sbjct: 67 LDEAIELRLHNINAKLLVLGAISPKDINKAIQYDITLTVPSQFWLERAIHYIEDNSDHVY 126 Query: 125 -ALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++DTG RLG+ +E + + +H A AD+P + Q F Sbjct: 127 LHVKLDTGMGRLGIKTLEEYQLVINLIKEHPTLIFDGVFTHFANADEPGDSM-KQQYAFF 185 Query: 183 RTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 L++ + + A +S L N R GISLYG + + + A+ Sbjct: 186 EELVTKAERPKYIHAQNSAGALLANCKLCNALRLGISLYGYYPSEYVRNEVDVQLKPSAK 245 Query: 242 ----IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ + G+ VSYG T IAV IGYADG+ + G Sbjct: 246 LMTQVVQTKYLNPGDSVSYGSTFTATEKMKIAVLPIGYADGFLRAMQGFA---------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVALASGTT 353 + + I+G++ MD + + D ++ GD + + ++ ++ +A+ T Sbjct: 296 --VNVNQHQCEIIGRVCMDQMIISVPD--DVKEGDEVILIDNNLNSSQAVEALAIKQNTI 351 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L +G R + Y Sbjct: 352 NYEVLCNLGRRLPRIY 367 >gi|227485012|ref|ZP_03915328.1| possible alanine racemase [Anaerococcus lactolyticus ATCC 51172] gi|227237009|gb|EEI87024.1| possible alanine racemase [Anaerococcus lactolyticus ATCC 51172] Length = 372 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 154/368 (41%), Gaps = 27/368 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L++++ ++NN + L+ ++ AVVK NAYGLG + + + + V F V + EG Sbjct: 6 LEVNIDKIRNNIIKIKNLNHRSKFCAVVKANAYGLGSDIVGREIEDL-VDYFAVARLSEG 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR + I +L + F+ ++ + + G L + Sbjct: 65 ILLRRAGIKKPILILGYVGLDDISKCFENDIDISVYDLGLAKEID---KLGYKLKAHLVL 121 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG R+G + + ++ SH + AD+ + Q E F +I Sbjct: 122 DTGHGRIGFRADQIEN-IRQLKTLSNIKIISAFSHFSTADEEDNSFTEKQEEIFDYIIEQ 180 Query: 189 YKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEAR 241 K +E ++S + + R GI LYG N ++ + Sbjct: 181 IKNDFDLEFVHLANSAGTIRQKIFKDMYRIGICLYGLYPSEVVRDNTEIKLEKTFKLYSF 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + I+ G +SYG ++ +A AIGYADGY S + GK + Sbjct: 241 VHFIKNIDKGTPISYGRTFVSSKPMKVATVAIGYADGYCRAFSNM-----------GKVY 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I GY +LG++ MD M D+T +++GD ++I+ +I D A GT +Y+L+ I Sbjct: 290 INGYGCKVLGRVCMDQMMVDVTGL-DVKIGDRVEIY-KEIDKD--ANLIGTISYELMTNI 345 Query: 362 GTRYAKFY 369 R + Y Sbjct: 346 SMRVKRIY 353 >gi|205372263|ref|ZP_03225077.1| alanine racemase [Bacillus coahuilensis m4-4] Length = 367 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 144/355 (40%), Gaps = 25/355 (7%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 L+ + AVVK N YG G ++A A AG V ++E + LR + I VL Sbjct: 2 LTDDVEAFAVVKANGYGHGDIQVAKAALQAGANGIAVAFLDEAINLREHGVTEPILVLGA 61 Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145 P ++ + + + + ++ DTG NRLGL EAL Sbjct: 62 TRPEYARVAAEKGISLTVYEESWIQEVKHFTPFTNPLALHIKCDTGMNRLGLKSVEALMR 121 Query: 146 THNSFNKKLG-QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA--SSSGI 202 L + +H A +D+ Q+ F + K + +S G Sbjct: 122 MEEEIESNSSLVLEGVFTHFATSDEIERSYTKRQIALFHDYLHALKKRPRYVHAGNSGGA 181 Query: 203 LLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKALAGELVSYGG 258 L F + R GI++YG T +H + +++ +I+ I++ GE +SYG Sbjct: 182 LRFSEAKFNMVRIGIAMYGLTPSPEITHELTVSLSPIMSIHTKIVHIKELPKGEKISYGA 241 Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318 + + IA IGYADG+ L G + ++G VPI+G+I MD Sbjct: 242 TYETQDNEWIATIPIGYADGWLRKLQGQ------------EVLVEGERVPIVGRICMDQC 289 Query: 319 MFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M + + VG + + G I ++++A T NY++ I TR + Y Sbjct: 290 MIKLP--REVPVGTIVTLIGTQGSETITMEEIADKMDTINYEVPCIISTRVPRVY 342 >gi|238785910|ref|ZP_04629876.1| Alanine racemase, catabolic [Yersinia bercovieri ATCC 43970] gi|238713179|gb|EEQ05225.1| Alanine racemase, catabolic [Yersinia bercovieri ATCC 43970] Length = 373 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 155/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L+AL +N + G+A+ +VVK NAYG G +I L F + Sbjct: 19 RPIAATLHLSALHHNLSLIRRHVGSAKIWSVVKANAYGHGLARIWQGLAA--TDGFALLD 76 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G Q+ + D + I Sbjct: 77 LNEAILLREQGWQGPILLLEGFFQPQDLALLDHYRLTTIVHSDWQLEAINAARLSAPLNI 136 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +A + + ++SH A AD+ Q R + Sbjct: 137 YLKLNSGMNRLGFPVGQADAVWQWANSLSNVAEVTLMSHFANADNHIG--THEQFSRIQQ 194 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 S + A+S+ IL P H+ RPGI LYG + N ++ V+ + Sbjct: 195 -ASGHISATRCFANSAAILHAPETHYDWVRPGIILYGASPSGNIADIAEIGLRPVMHLHS 253 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG V YG + + T I V A GYADGYP G Sbjct: 254 EIIAVQALSAGHQVGYGSRYRATGAQRIGVVACGYADGYPRLA-----------PSGTPI 302 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T +VG ++I+G ++ +D+VA A+GT Y+L+ Sbjct: 303 RVDGILTQTVGAISMDMLTVDLTPCPQAQVGSQVEIWGANLPIDNVAAAAGTVGYELMCA 362 Query: 361 IGTRYA 366 + R Sbjct: 363 LAARVP 368 >gi|295676844|ref|YP_003605368.1| alanine racemase [Burkholderia sp. CCGE1002] gi|295436687|gb|ADG15857.1| alanine racemase [Burkholderia sp. CCGE1002] Length = 356 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 146/348 (41%), Gaps = 22/348 (6%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 + ++ AVVK NAYG G ++ P L F + +EE VKLR I +L Sbjct: 22 RRHAPKSKIWAVVKANAYGHGLARVFPGLRA--TDGFGLLDLEEAVKLRELGWAGPILLL 79 Query: 84 YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142 G P +I +L + S QL L+++TG NRLG ++++ Sbjct: 80 EGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVNIQLKMNTGMNRLGYTVEKF 138 Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202 + + +++H + AD + Q+E F G SL++S+ Sbjct: 139 RAAWERARACQGVGQITLMTHFSDADAERGI--AHQMEAFERGAQGIAGAR-SLSNSAAT 195 Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258 L P HF RPGI LYG + +Q +T + +I ++ G V YG Sbjct: 196 LWHPEAHFDWVRPGIILYGASPSGVTAAIDGTGLQPAMTLASELIAVQTLGEGSSVGYGS 255 Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318 I V A GYADGYP G + G I+G+++MDM Sbjct: 256 TFTARAPMRIGVVACGYADGYPR-----------VAPEGTPVIVDGVRTRIVGRVSMDML 304 Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 D+T + VG ++++G + +D+VA A GT Y+L+ + R Sbjct: 305 TVDLTPVPTANVGSRVELWGTALPIDNVAQACGTIGYELMCAVAPRVP 352 >gi|295689700|ref|YP_003593393.1| alanine racemase [Caulobacter segnis ATCC 21756] gi|295431603|gb|ADG10775.1| alanine racemase [Caulobacter segnis ATCC 21756] Length = 360 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 135/371 (36%), Positives = 189/371 (50%), Gaps = 14/371 (3%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M RL IDL AL N ++ A +G+A A VK NAYGLG ++A L+ GV+ F Sbjct: 1 MTDLHDARLTIDLDALAANHAALQARAGDAEVAPAVKANAYGLGAARVADRLWAEGVRSF 60 Query: 61 FVTSVEEGVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 +V + EGV LR A I+VL G PG + L PV++S+PQ+ ++ Sbjct: 61 YVARLAEGVALRAALGDREAAIYVLDGATPGAGDALEGARLTPVLNSLPQIEAWNAQARA 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G AL +DTG NRLGL +E + K L L+ISHLACAD P +N+ Q Sbjct: 121 GR-LKAALHLDTGMNRLGLRPEELKVLLGATDRLKRLDLELVISHLACADVPDHPMNTRQ 179 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 LERF ++ S A+S+G+ LG Y F RPGISLYGG + ++ V T Sbjct: 180 LERFSEAVAQLPNARKSFANSAGLFLGEAYRFDQARPGISLYGGGPEGRPHPEIRAVATV 239 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 EA I+ +R GE V YG + IA+ GYADG P G Sbjct: 240 EAPILQVRVVPRGETVGYGATWTAPDTTRIAIVGAGYADGVPRA-----------SHPKG 288 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + + G +LG+++MD+ D+TD + G +++ G ++ +DD A A+GTT Y+LL Sbjct: 289 QVWFDGARRQMLGRVSMDLMAVDVTDCDAARPGAMVELLGSNMPIDDAATAAGTTAYELL 348 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 349 TNIAPRARRIY 359 >gi|241889490|ref|ZP_04776789.1| alanine racemase [Gemella haemolysans ATCC 10379] gi|241863797|gb|EER68180.1| alanine racemase [Gemella haemolysans ATCC 10379] Length = 371 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 168/382 (43%), Gaps = 27/382 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ L++DL A+ NN++ + AL+ A+VK ++YGLG IA LY GV+ F Sbjct: 1 MINDRPTELRVDLNAILNNYNKLTALNNKKTGIAIVKADSYGLGARAIANHLYKNGVRHF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCG 119 ++EE ++L+ + + VL +P K + N + S V ++ + Sbjct: 61 ATATLEEALELKDVIFDSMVLVLGVTNPQNVKYAVENNVSLTCPSKVWLEKCLEEMETIK 120 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++++TG R+G S +E L + + I SH + AD ++ + Q Sbjct: 121 GKLKIHVKIETGMGRIGTSDKEELVKIDKLLSSEKIDFEGIFSHYSNADGSDNNYDDYQT 180 Query: 180 ERFRTLISHYKGIEASLA----SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231 + F + + + +S+ + +TR GISLYG N Sbjct: 181 KNFDERLKLFTHKPKYIHIGNSASTVKYSDRQDQYNMTRLGISLYGCYPSENIEKLDKIK 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ VV+ ++I ++K L GE + YG + +D IA IGYADG G + Sbjct: 241 LEPVVSLVSKITHVKKFLKGEKLGYGVSYEAKQDEYIATVPIGYADGILRRAQGFKIKVG 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 I+G++ MD M ++ +I+VGD + IFG + I +DD A Sbjct: 301 TED------------CEIVGRVCMDQLMVRCSE--NIKVGDDVLIFGENNGQKISVDDFA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ I R + Y Sbjct: 347 TFQDTISYEIFCCINKRVPRVY 368 >gi|319399562|gb|EFV87817.1| alanine racemase [Staphylococcus epidermidis FRI909] Length = 382 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 158/382 (41%), Gaps = 30/382 (7%) Query: 3 SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R ++L A+ N+ + N L N +V+K N YGLG KIA L G Sbjct: 2 SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A++ VL + + + + S T Sbjct: 62 FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G+ + E + + + +H A AD+P S +N Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRNHLVFEGVYTHFASADEPGSSMN- 180 Query: 177 VQLERFRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 Q F+ +++ K I +S+G LL R GISLYG N Sbjct: 181 EQYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ AGE VSYG + IA+ IGYADGY ++ Sbjct: 241 LRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G + G ++G+I MD + + ++ G+ + + + VA Sbjct: 294 -----GAFVNVNGNQCEVIGRICMDQMIVKVP--SHVKTGEKVILMDNHVDSPQSAEAVA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368 >gi|229551601|ref|ZP_04440326.1| alanine racemase [Lactobacillus rhamnosus LMS2-1] gi|258540732|ref|YP_003175231.1| alanine racemase [Lactobacillus rhamnosus Lc 705] gi|229315066|gb|EEN81039.1| alanine racemase [Lactobacillus rhamnosus LMS2-1] gi|257152408|emb|CAR91380.1| Alanine racemase [Lactobacillus rhamnosus Lc 705] Length = 379 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 152/379 (40%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SSV L ++ P Sbjct: 67 LLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQMVSLPLSSVDWLKQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + +DTG R+G + + + K + I +H A ADDP Q Sbjct: 127 PLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDDAYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPM 232 + +F +++ + +S+ L + + R G+++YG P+ Sbjct: 187 VAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + T D I +GYADG+ L G Sbjct: 247 EPALSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G+ I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGHPCEIVGRICMDQFMIRLPKAYPA--GTKVVLIGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + +R + Sbjct: 353 YSHTIHYEIACNLTSRLKR 371 >gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145] gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145] Length = 818 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 153/369 (41%), Gaps = 19/369 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L A+++N + L + +VK YG G +IA L V V +E Sbjct: 458 LEINLNAMEHNLNYYRSKLKPGVKLMTMVKAFGYGSGSFEIANLLQFNHVDYLSVAYADE 517 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYAL 126 GV LR I V+ E I+ + S F + L + G+ ++P L Sbjct: 518 GVTLRQNGITLPIMVMSPEISSLEAIVKHQLEPEIFSQSTLEAFSNYLQNAGISNYPIHL 577 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ----LERF 182 ++DTG +RLG E K ++ + SHL ++ P + Q ++ F Sbjct: 578 KLDTGMHRLGFMPDELDFIADFIKTKNTVKIQSVFSHLVASESPIHDDFTRQQISIIKDF 637 Query: 183 RTLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + G + ++S I P F + R GI LYG + ++ V + Sbjct: 638 TNKLEQRIGYTFIKHICNTSAITRWPEAQFDMVRLGIGLYGVDNFSEDDENLEQVAVLKT 697 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I++ GE + YG + + D IA IGYADG+ L G Sbjct: 698 TVSQIKQIKRGETIGYGRRGVMPEDGQIATVKIGYADGFLRALGNGV----------GSM 747 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 FI G V +G I MDM M +IT +++ GD + +F +L +A T Y++L Sbjct: 748 FINGEEVFTIGNICMDMCMLNITG-KNVKEGDEVIVFNSQKRLYKLAEKLNTIPYEILTS 806 Query: 361 IGTRYAKFY 369 + R + Y Sbjct: 807 VSQRVKRVY 815 >gi|87300882|ref|ZP_01083724.1| alanine racemase [Synechococcus sp. WH 5701] gi|87284753|gb|EAQ76705.1| alanine racemase [Synechococcus sp. WH 5701] Length = 403 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 185/384 (48%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + +++D TA+++N ++ L+ ++ AVVK + YG G +A A G Sbjct: 21 LHPRQRAWVEVDETAIEHNARALGRWLAPDSSLMAVVKADGYGHGAAPVARAAMAGGATS 80 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117 V +++EG++LR +A + V+ IHP + + + +L+P IS + + L S Sbjct: 81 LGVATLQEGIELRQAGLEAPVLVMGNLIHPEELRSCLEWDLMPTISGMREALLCQNLASG 140 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHV 174 G S L++DTG RLG+ + + L+ + SHLA AD P + Sbjct: 141 SGRSMALHLKLDTGMARLGVDWGDGVRLLQALLGLDAVLLAGVYSHLADADAPDPGGGGL 200 Query: 175 NSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 ++Q +RF +++ + LA+S+G L H+ L R G++LYG + S Sbjct: 201 TALQQQRFESVLRGAGELGLATGVRHLANSAGTLRCRRLHYDLVRVGLALYGQAPAEHLS 260 Query: 230 H--PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 H P+Q ++ AR+ LIR+ AG VSYG + R S +AV IGYADG P LS Sbjct: 261 HTVPLQPAMSVRARVCLIREVPAGVGVSYGHRYTTRRPSRLAVVTIGYADGVPRLLSNQL 320 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 + G + +G ITMD + D T++ +EVG + + G D I Sbjct: 321 -----------EVLFAGRRLAQVGAITMDQLLIDATEAPQLEVGSVVTLLGDDGGERITP 369 Query: 344 DDVALASGTTNYDLLVRIGTRYAK 367 D A ASGT +++L R + Sbjct: 370 QDWAQASGTIPWEILCGFKHRLPR 393 >gi|291279508|ref|YP_003496343.1| alanine racemase [Deferribacter desulfuricans SSM1] gi|290754210|dbj|BAI80587.1| alanine racemase [Deferribacter desulfuricans SSM1] Length = 363 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 97/368 (26%), Positives = 161/368 (43%), Gaps = 19/368 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVT 63 +I+L K+N +LS ++ A+VK +AYG G K++ Y V+DF V Sbjct: 9 RPTYAEINLANYKHNIEVAKSLS-KSKIIAIVKADAYGHGAIKLSKFAYEQCDVKDFGVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121 ++EEGV LR P + G + + + P + + K V Sbjct: 68 TIEEGVNLRNVLPTDARIITLGYIDEHHFEELLHHKITPTVFDKSIMAKLDKFAKGNNVV 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG NRLG L DF + + L+++HL+ +D Q+ R Sbjct: 128 LDVVLKIDTGMNRLGFGLN--TDFNELVESYSNLNIVLMMTHLSSSDTDLD-YTKWQINR 184 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F + Y + +S + + + TRPGI YG N+ ++ V++ ++ Sbjct: 185 FDEYLKRYNVKAETSVFNSSAICFYSNKYTYTRPGIMSYGYVYPENR-FGLKPVMSIYSK 243 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I I++ GE +SY ++D I V IGYADGY LS G F Sbjct: 244 LIHIKRLKKGEKISYNQTFTASKDMKIGVIPIGYADGYFRALSN-----------KGVMF 292 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G ++G + MDMTM DIT ++ +++ G I + +A T +Y+++ I Sbjct: 293 VNGKPCNVVGTVCMDMTMIDITHLNESDLDCEVEVLGKHIDAEQIAKMCNTISYEIVCAI 352 Query: 362 GTRYAKFY 369 R + Y Sbjct: 353 SDRIPRVY 360 >gi|297587277|ref|ZP_06945922.1| alanine racemase [Finegoldia magna ATCC 53516] gi|297575258|gb|EFH93977.1| alanine racemase [Finegoldia magna ATCC 53516] Length = 391 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 155/379 (40%), Gaps = 28/379 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LK+DL LK+N+ + +S + AVVK NAYG G I L G+ F V+++ E Sbjct: 8 LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127 ++LR I +L I ++ N+ + + + ++ Sbjct: 68 LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYETAVEINNVAKSLNKICKVHIK 127 Query: 128 VDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +DTG RLG + + L+ + L I SH + AD Q + Sbjct: 128 IDTGMTRLGFQVRLDKDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187 Query: 184 TLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTV 235 + + + ++ + Y + R GI LYG N ++ + Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIHGYFLDMIRCGIGLYGYHASDYVRENSRLNLEEI 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + +I+ G + YG ++++A A IGYADGYPL LS Sbjct: 248 SSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYPLELSN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 I G ILGK+ MD M D+T ++VGD I +FG D I L D+A + Sbjct: 298 -KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKILLFGKDDMGEISLYDLAEMAN 356 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T Y+LL R+ R + YT Sbjct: 357 TNVYELLCRVTMRIPRIYT 375 >gi|163814916|ref|ZP_02206304.1| hypothetical protein COPEUT_01067 [Coprococcus eutactus ATCC 27759] gi|158449855|gb|EDP26850.1| hypothetical protein COPEUT_01067 [Coprococcus eutactus ATCC 27759] Length = 377 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 161/383 (42%), Gaps = 25/383 (6%) Query: 1 MHSNEFL-R--LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M++ F R IDL L++N ++ L AV+K + Y G + P L G Sbjct: 1 MNNRPFAGRTAAVIDLAKLRSNIANIKSRLKPGVEFIAVMKGDGYRHGIAGLYPTLKECG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKL 115 + + V EEG LR I +L +L + S+ + Sbjct: 61 IDSYAVAIWEEGKMLRDAGATESILILGDTADDMLDEAAKYDLDLTVFSMEGAENMAAAA 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G ++++TG NR+G QE+ D + ++ I +H A AD+ Sbjct: 121 RRAGKKQNVQIKLNTGMNRIGFPVCQESFDTIKKICEMEDLNVTGIFTHFARADEGDHTS 180 Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-- 227 QL+ + ++ + + + +A+S IL+ P R G LYG T + Sbjct: 181 ARKQLDLYLHAVNELEKMGVVIPKHHVANSPAILMLPEAQLDAVRCGDILYGLTPSDDFD 240 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 K+ +Q +++ + ++++ AG V YGG R + IA +G+ADGY LS Sbjct: 241 WKNSGLQEILSWYTYVAMVKEVPAGSEVGYGGTFVTERPTKIATLPVGFADGYSRYLSN- 299 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 GK I G+ PI+G++ MD M DITD ++ GD + + G + ++D+ Sbjct: 300 ----------KGKVIINGHEAPIIGRVCMDQCMADITDIPDVQRGDTVTLLGEGMSIEDM 349 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T ++ I R + Y Sbjct: 350 ANMLDTNVDVIVCNISVRVPRVY 372 >gi|326793406|ref|YP_004311226.1| alanine racemase [Marinomonas mediterranea MMB-1] gi|326544170|gb|ADZ89390.1| Alanine racemase [Marinomonas mediterranea MMB-1] Length = 377 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 22/369 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++DL + +N + SG AVVK NAYG G ++A A +AG V ++ Sbjct: 6 TWVEVDLDRIAHNVSHIKEHSGYEHLFAVVKANAYGHGDVEVARAALDAGATHLAVAFLD 65 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LRL I V+ + + + + + + + + G + L Sbjct: 66 EALSLRLAIKDVPILVMGPVRVEDISLAAEHKIHITVHDMDWIMQAAHYR--GPTVNVHL 123 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++D+G +R+GL+ L +++ + + + D S QL+ + Sbjct: 124 KMDSGMHRIGLTSAATLALANSTLREHKHINLVGLFTHFATADSCKDYYSQQLKNVAEMT 183 Query: 187 S--HYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEA 240 + E S+S LL P + R GI++YG S P+ + + + Sbjct: 184 AGLDLNTFEYVHQSNSAALLYQTPQPNANCARLGIAMYGLAPNNEMSSPVSLKQAFSLHS 243 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI ++ LAG+ V YG + IAV IGYADG+ Sbjct: 244 RITQVKSILAGDKVGYGATFEANAPMKIAVIPIGYADGWLRYHQNRS------------V 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 IKG + PI+G+I MD +M I +I GD + + +D A T NY+++ Sbjct: 292 SIKGKLYPIVGRICMDQSMILI--DETITTGDQVDLINDQCTVDMAAKDLQTINYEIVCS 349 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 350 ISDRVPRRY 358 >gi|282852968|ref|ZP_06262305.1| alanine racemase [Propionibacterium acnes J139] gi|282582421|gb|EFB87801.1| alanine racemase [Propionibacterium acnes J139] Length = 375 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK GV+ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLCPERLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLVETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGY 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVNR 370 >gi|325267108|ref|ZP_08133777.1| alanine racemase [Kingella denitrificans ATCC 33394] gi|324981461|gb|EGC17104.1| alanine racemase [Kingella denitrificans ATCC 33394] Length = 356 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 20/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L++N+ + + G AVVK +AYG G + A AL + F V Sbjct: 2 RPLVAEIRLAHLRHNYRVLKEMHGQ-NLLAVVKADAYGHGAVQCAKALDDM-ADGFAVAF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE V LR ++ I +L G+ E + + + + Sbjct: 60 LEEAVTLRENGIKSPILLLEGVFEPHEYALVEQYGLWTVIHQQTQLEDCLAHDWKQPATV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G H + ++H ACADD + +Q++ F T Sbjct: 120 WLKMDSGMHRAGFFPHNYAAAYHALQQSPKIGKIVKMTHFACADDAERGMTEMQIDTFDT 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVVTAEA 240 G ++SLA+S+ IL P + R G++LYG + + + V+ + Sbjct: 180 ACEGLGG-DSSLANSAAILAYPEARREWGRAGLALYGVSPFAAGAGCFEADLKPVMRVAS 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++ R E + YG R + + + A GYADGYP Sbjct: 239 QVFAERVLQPHEPIGYGASFYTKRSTRVGLVACGYADGYPRNA-----------PTDTPV 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 FI G ++G+ +MDM D++ + +++FG + ++++A ++G Y++L Sbjct: 288 FINGMRSRLIGRASMDMLTVDLSHVPADSAY-EVELFGDSVSINELAQSAGHIPYEILCH 346 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 347 I-KRMRRVY 354 >gi|329735688|gb|EGG71971.1| alanine racemase [Staphylococcus epidermidis VCU028] Length = 382 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 157/382 (41%), Gaps = 30/382 (7%) Query: 3 SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R ++L A+ N+ + N L N +V+K N YGLG KIA L G Sbjct: 2 SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A++ VL + + + + S T Sbjct: 62 FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 121 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G+ + E + + + +H A AD+P + +N Sbjct: 122 NQKNLWLHVKLDTGMGRIGMKDIDEYKEVVDLINKRDHLVFEGVFTHFASADEPGNSMN- 180 Query: 177 VQLERFRTLISHYKGIEASLA-SSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 Q F+ +++ + +S+G LL R GISLYG N Sbjct: 181 EQYTLFKEMVNQVEKPNYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ AGE VSYG + IA+ IGYADGY ++ Sbjct: 241 LRPSAQLVSETVQVKTLKAGETVSYGRTYIADEEMTIAILPIGYADGYLRSMQ------- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G + G ++G+I MD + + ++ G+ + + + VA Sbjct: 294 -----GAFVNVNGSQCEVIGRICMDQLIVKVP--SHVKTGEKVILMDNHVDSPQSAEAVA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 347 NKQGTINYEVLCNLSRRLPRIY 368 >gi|148244756|ref|YP_001219450.1| alanine racemase [Candidatus Vesicomyosocius okutanii HA] gi|226711067|sp|A5CWE3|ALR_VESOH RecName: Full=Alanine racemase gi|146326583|dbj|BAF61726.1| alanine racemase [Candidatus Vesicomyosocius okutanii HA] Length = 351 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 100/358 (27%), Positives = 167/358 (46%), Gaps = 20/358 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + I +ALK+N + S N++ ++VK NAYG I P + ++ V+ + E Sbjct: 7 VSISQSALKHNLLVVKENSPNSKIVSMVKANAYGHKINLINPIINHS--DLLAVSEISEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KLR T + + + I + + N V+ Q+T + + +++ Sbjct: 65 KKLRKITKKPILLLSGVIEDQELQQAIKLNCQIVVHDKTQITTIN---NTKQPINIWIKI 121 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG +RLGLS E D N L ++SH ACAD+ + +N QL F+ H Sbjct: 122 NTGMHRLGLSTHEYFDCIKLLANNPLINTQCVMSHFACADEINHPMNQSQLFEFKKSTYH 181 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + S+A+S+ IL P HF RPGI LYG + ++ ++ V+ A I+ I+ Sbjct: 182 TT--KRSMANSAAILSNPASHFDYVRPGIMLYGVSPFEIINNHLKPVMQISAPIMSIKTI 239 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G+ V YG + + IA IGY DGYP G I + P Sbjct: 240 QTGDSVGYGATWIAKKSTTIATIGIGYGDGYPRHAKN-----------GTPVLINNNLCP 288 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRY 365 ++G+++MD+ DI++ VGD + ++G ++++ +A S T Y+LL I +R Sbjct: 289 LIGRVSMDLICVDISNV-KASVGDNVILWGAQKLRIETIAKYSDTIAYELLTGISSRV 345 >gi|330895721|gb|EGH28011.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 330 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 147/338 (43%), Gaps = 17/338 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AVVK +AYG G ++A AL A F V Sbjct: 2 RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-EAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A + +L G E + + + + + G Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELALIVEHDLGTVVHATWQLEAIEQARLGKPITV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH + AD+ +S + QL F T Sbjct: 120 WLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARVVLMSHFSRADELNSGCSDEQLAVFET 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 E SL + +L P +RPGI LYG T +Q V+T E++ Sbjct: 180 F-RKGLAAETSLKNPPAVLGWPQIPSDWSRPGIMLYGATPFDQAHPLADRLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II +R+ GE V YG R S I V A+GYADGYP G Sbjct: 239 IISVRELPVGEPVGYGATFVCDRPSRIGVVAMGYADGYPRHA-----------PTGTPVQ 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339 I G +LG+++MDM D+TD +G +++ G Sbjct: 288 IDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELVGQ 325 >gi|297625319|ref|YP_003687082.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921084|emb|CBL55625.1| Alanine racemase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 382 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 148/381 (38%), Gaps = 31/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEE 67 L+IDL AL++N ++ L G+ + VK + YG G IA V +V E Sbjct: 7 LEIDLDALRHNARAIKQLVGDRKVLVAVKADGYGHGAVPIARLFQREHLADWLGVATVSE 66 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126 + LR I L P + D ++ + G L Sbjct: 67 AMALREGGVTLPILKLSHAFPEELPTAIDADIALTVVDEQSADEAAEAAKVVGKPVNVHL 126 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +DTG R+G + A+ + L + +L RF + Sbjct: 127 ALDTGMRRIGAEPEHAVALARHIDEDALNLQGIFTHMPVSDTTQGYDFTVEELARFAKAV 186 Query: 187 SHYK---------GIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDK--INKSHPMQT 234 + + A++S +LG + + RPGI++YG ++ ++ Sbjct: 187 DDVQADRATRGLPAVPLVHAAASAGVLGHDLSGLTMVRPGIAIYGAYPDAQTPRTAALRP 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 VVT +++ I++ AGE VSYG D IA +GYADG+ S Sbjct: 247 VVTMRSKVSFIKRIRAGETVSYGRTWTAPTDRWIATVPVGYADGFNRLNSNR-------- 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPD----IKLDDVAL 348 G+ I G P+ G++ MD TM D+ D + GD + I G I D++A Sbjct: 299 ---GRMLINGRSFPVAGRVCMDQTMLDLGEADDHGVHRGDDVIIIGASGDEYISTDELAE 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +GT +Y++ I R ++ Y Sbjct: 356 LAGTISYEVTAVIPPRVSRQY 376 >gi|83945273|ref|ZP_00957622.1| alanine racemase [Oceanicaulis alexandrii HTCC2633] gi|83851443|gb|EAP89299.1| alanine racemase [Oceanicaulis alexandrii HTCC2633] Length = 363 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 183/369 (49%), Gaps = 23/369 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N RL IDL A+ N+ ++ AL+ A T+AVVK NAYGLG +A L G + FFV Sbjct: 11 NTRSRLVIDLDAIARNYAALQALTPKAETSAVVKANAYGLGAGPVARRLAKQGARTFFVA 70 Query: 64 SVEEGVKLRLYT--PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 +VEEG +R P I+V G + L +++ + + + Sbjct: 71 TVEEGAAVREALGDPLPDIWVFAGYRAKDRPLYVKHRLGAILNQPGETAQFR----AAPT 126 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P A+ +DTG RLG + + N + S+I+SHLAC++D +S N QLER Sbjct: 127 GPCAIHIDTGMARLGYGAGDISGLLNALQNLDV---SMIMSHLACSEDAASTQNLRQLER 183 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F L + SLA++ G+LLG +Y F +TRPGI LYG T ++ P + VV EA Sbjct: 184 FTALTNALPETRLSLANTGGVLLGESYQFDVTRPGIGLYGATADLDADTPFEPVVKLEAP 243 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I+ +R+ AG+ V YG L+A GYADG P LSG G Sbjct: 244 ILQLREIDAGDTVGYGATYVAHSPRLVATVGAGYADGLPRALSG-----------AGCAR 292 Query: 302 IKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I G PILG+I+MD+T D+T I G + FGPD+ A GT Y++L Sbjct: 293 IAGLRAPILGRISMDLTTIDVTGLEHEIAQGAVPEFFGPDL--YQAAALDGTLPYEILTG 350 Query: 361 IGTRYAKFY 369 +G R + Y Sbjct: 351 LGARAERIY 359 >gi|332639567|pdb|3MUB|A Chain A, The Crystal Structure Of Alanine Racemase From Streptococcus Pneumoniae gi|332639568|pdb|3MUB|B Chain B, The Crystal Structure Of Alanine Racemase From Streptococcus Pneumoniae Length = 367 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 152/376 (40%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N M A AVV NAYG G +A A+ + V F V Sbjct: 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVXANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I +L + + + ++ + + Sbjct: 65 SNIDEAIELRQAGLSKPILILGVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +D+G R+G ++ + + + I +H A AD+ S + QLERF Sbjct: 125 TVHLXIDSGMGRIGFREASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 +T+++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KTILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDLPYDLIPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ AG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA T Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|199598806|ref|ZP_03212218.1| Alanine racemase [Lactobacillus rhamnosus HN001] gi|258509531|ref|YP_003172282.1| alanine racemase [Lactobacillus rhamnosus GG] gi|199590311|gb|EDY98405.1| Alanine racemase [Lactobacillus rhamnosus HN001] gi|257149458|emb|CAR88431.1| Alanine racemase [Lactobacillus rhamnosus GG] gi|259650798|dbj|BAI42960.1| alanine racemase [Lactobacillus rhamnosus GG] Length = 379 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 153/379 (40%), Gaps = 30/379 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ID TA+ +N + L + AVVK +AYG G ++A AG F V Sbjct: 7 RPATVLIDETAILHNVQHEVARLKKQTQLFAVVKADAYGHGMLRVAHVAKAAGASGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E + LR + VL + I + +SSV L ++ P Sbjct: 67 LLDEALDLRAANYTEPVLVLGIVPSQYAAIAAAQTVSLPLSSVDWLKQALPVLEAQPELP 126 Query: 124 Y---ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + +DTG R+G + + + K + I +H A ADDP Q Sbjct: 127 PLRLHIALDTGMGRIGFTDDQTLLDAVAFIQAHPKAFTIEGIFTHFATADDPDDAYFKQQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPM 232 + +F +++ + +S+ L + + R G+++YG P+ Sbjct: 187 VAKFNHMVALLPHRPRYVHVSNSATSLWHAACNGNMVRYGVAIYGLNPSGDVIPTTPFPL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ AG+ +SYG + T D I +GYADG+ L G Sbjct: 247 EPALSLESELTFCKQVHAGDGISYGVTYRATGDEFIGTVPVGYADGWLRRLQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G++ I+G+I MD M + + G + + G +I L DVA Sbjct: 301 ------HVLVDGHLCEIVGRICMDQFMIRLPKAYPA--GTKVVLIGQSGDQEITLLDVAK 352 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +Y++ + +R + Sbjct: 353 YSHTIHYEIACNLTSRLKR 371 >gi|170016583|ref|YP_001727502.1| alanine racemase [Leuconostoc citreum KM20] gi|169803440|gb|ACA82058.1| Alanine racemase [Leuconostoc citreum KM20] Length = 376 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 166/378 (43%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++IDL A++ N S+ A +G R AVVK + YG G +A ALY GV+DF V + Sbjct: 11 RPSWIEIDLGAIQENAQSIMAHAGAKRLIAVVKADGYGHGATPVANALYEIGVRDFAVAT 70 Query: 65 VEEGVKLRL--YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + EG+KLR RI +L ++ L P I S+ L+ + + G + Sbjct: 71 IGEGIKLRQELAYQDYRIVLLGVQDIAHVDVMVKYRLSPAIESIDWLSVALQAIPEGATL 130 Query: 123 PYALQVDTGFNRLGLSLQEALD-FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G +EA+ N +L + +H A ADD + Q +R Sbjct: 131 DVELAVDTGMGRMGAHSKEAVYSVYRYIKNNDKLELGGVFTHFATADDSNIGYYKQQAQR 190 Query: 182 FRTLI--SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKIN---KSHPMQTV 235 F + + LA+S L + R G LYG P++ V Sbjct: 191 FNDWVTAAGIPRQYWHLANSGSALWHTQEIDTRTIRVGSVLYGYNPGAPLLTLPIPLKHV 250 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++RI + + + GE VSYG + +A IGYADGY ++G+ Sbjct: 251 FALKSRIGAVHQLITGESVSYGATYTAQKPQWVATLPIGYADGYLRRMAGM--------- 301 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + I G + ++G+ITMD + + + +G + + G D I +++ A + Sbjct: 302 ---RVLINGKVTYVIGRITMDQIVIALDQAYP--IGTEVTLIGRDGDNEITVEEFADYAN 356 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++L G R + Y Sbjct: 357 TIPHEILTSFGPRLPRIY 374 >gi|296168767|ref|ZP_06850456.1| D-alanine racemase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896550|gb|EFG76194.1| D-alanine racemase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 394 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 161/379 (42%), Gaps = 26/379 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +DL A+++N + +G A+ AVVK + YG G + A A G + V +V Sbjct: 19 LAEALVDLGAIEHNVRLLREHAGAAQVMAVVKADGYGHGATQAARAALAGGAAELGVATV 78 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E + LR A + + ++ +SS Q G + Sbjct: 79 AEALALRAEGITAPVLAWLHPPGIDFRPALLADVEIAVSSERQLDELLDAARRTGRAATV 138 Query: 125 ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG NR G+ + + +L ++SH+ AD P + VN +Q +R Sbjct: 139 TVKVDTGLNRNGVHPARYPSMLTALRRAVAENAIRLRGLMSHMVFADQPDNPVNDLQAKR 198 Query: 182 FRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTV 235 F +++ + A LA+SS + P+ F L RPG+++YG + + Sbjct: 199 FADMLAQAGESGVRFEVAHLANSSATMSRPDLAFDLVRPGVAVYGLSPVPELGGMGLVPA 258 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T + + L++ AGE VSYG RD+ +A+ +GYADG +L G Sbjct: 259 MTVKCPVALVKSIRAGESVSYGHTWTAERDTTLALLPVGYADGVFRSLGGRL-------- 310 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DIKLDDVALAS 350 + I G P +G+I MD + D+ + GD +FGP + D A Sbjct: 311 ---EVLINGKRRPGVGRICMDQFVVDLGPGRTDVAEGDEAILFGPGGSGEPTAQDWADVL 367 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +Y+++ R + Y Sbjct: 368 GTIHYEVVTSPRGRITRTY 386 >gi|86608143|ref|YP_476905.1| alanine racemase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556685|gb|ABD01642.1| alanine racemase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 424 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 111/378 (29%), Positives = 172/378 (45%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ID L+ N + L N AVVK NAYG G + +AP AG + V Sbjct: 50 SRAWVEIDAAQLRENLRLLQRRLGSNVEIWAVVKANAYGHGAQLVAPVAVAAGAKGLCVA 109 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVS 121 ++ EG++LR QA + VL ++ E + + + + G Sbjct: 110 TLAEGIELRQTGLQAPVLVLGALNTWAELQQAMAARLEVSLTCTDQIPLMRQVARWAGRP 169 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P + VDTG RLG+ +EA + + SHLA AD+P S V Q R Sbjct: 170 IPVHVNVDTGMTRLGIPWKEAAAVWGQICRIPELEGCSLFSHLATADEPHSPVMEQQHAR 229 Query: 182 FRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTV 235 F ++ + L +S+G L H+ R G+ LYG + + P Q + Sbjct: 230 FAQVVEQIRQAGDPLPALHLDNSAGALTH--LHYSRVRLGLVLYGLSPAPHLPVPGLQPI 287 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +AR+ I+ A VSYG + +R S IA AIGYADG P LSG Sbjct: 288 LRLKARLSHIQTVPAQTGVSYGHRYITSRPSRIATLAIGYADGIPRRLSGWL-------- 339 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350 +G+++G ++ +G ITMD M+D+T+ I+VGD +++ GP+ + + D A Sbjct: 340 ---RGWVRGGLIQQVGTITMDQCMWDVTERPDIQVGDVVELLGPNLANAGLSVQDWADQL 396 Query: 351 GTTNYDLLVRIGTRYAKF 368 GT +Y+LL + R + Sbjct: 397 GTISYELLCGLSARLPRV 414 >gi|163739575|ref|ZP_02146984.1| alanine racemase [Phaeobacter gallaeciensis BS107] gi|161387034|gb|EDQ11394.1| alanine racemase [Phaeobacter gallaeciensis BS107] Length = 345 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 130/365 (35%), Positives = 191/365 (52%), Gaps = 25/365 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL ++L AL NW +++AL+ N TAAVVK N YGL ++ AL NAG ++FFV E Sbjct: 4 ARLTLNLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGRALANAGARNFFVAMAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I V G G K++ D L P+++S+ Q+ + + + HP+ Sbjct: 63 EGVALRRAIGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESL---PGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+DTG NRLG+ E + ++ L++SHLACAD+ + +NS QL+ F Sbjct: 120 VQLDTGMNRLGMEAAEWAAVRDIALSQ---GPVLLMSHLACADETTHPMNSHQLQNFLD- 175 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 ++ + SLA++ G+LLG NYHF L RPGI LYGG + V + +I I Sbjct: 176 LTEGLDLPRSLAATGGLLLGRNYHFDLCRPGIGLYGGQPYGDA----LPVAQLDLPVIQI 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG R S IA A GYADG L + + Sbjct: 232 RSLDPGETVGYGNSWAAQRPSRIATVAAGYADGLHRALGSGQI----------QVYAGDT 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++MD+ D+TD ++ I +D +A A+GT Y++L +G+RY Sbjct: 282 PCPVVGRVSMDLITVDVTDLGDDP--SHLAILNERQTVDTLADAAGTIGYEILTSLGSRY 339 Query: 366 AKFYT 370 A+ YT Sbjct: 340 ARSYT 344 >gi|238754895|ref|ZP_04616245.1| Alanine racemase, catabolic [Yersinia ruckeri ATCC 29473] gi|238706906|gb|EEP99273.1| Alanine racemase, catabolic [Yersinia ruckeri ATCC 29473] Length = 357 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 153/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L+A +N + + L+ +A+ +VVK NAYG G +I +L A F + Sbjct: 3 RPISATLHLSAFTHNLNLVRGLAPDAKVWSVVKANAYGHGLARIWRSL--ATTDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR Q I +L G Q+ ++ D + + + Sbjct: 61 LNEAVLLREQGWQGPILLLEGFFQPQDLVLLDHYRLTTVVHSDWQLEAIQRARLTAPLNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + + + ++SH A AD + Q Sbjct: 121 YLKINSGMNRLGFPVGQTHAVWLWAKSLANIGQITLMSHFANAD---NPTGVTQQFDHIV 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 S S A+S+ L H RPGI LYG + +Q ++ + Sbjct: 178 HASAKIAAPRSFANSAATLWHSRTHADWIRPGIILYGASPSGKVADIADSGLQPTMSLHS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I+ I+ G V YG + + I + A GYADGYP G Sbjct: 238 KILAIQDLSKGHSVGYGSRYLASDAQRIGIVACGYADGYPRHA-----------PTGTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++ G + LG I+MDM M D+T +G ++++G ++ +D+VA +GT Y+L+ Sbjct: 287 WVDGVLTRTLGTISMDMLMLDLTSCPQAMIGSQVELWGKNLPIDEVAATAGTVGYELMCA 346 Query: 361 IGTRYA 366 + +R Sbjct: 347 LASRVP 352 >gi|123966942|ref|YP_001012023.1| alanine racemase [Prochlorococcus marinus str. MIT 9515] gi|123201308|gb|ABM72916.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9515] Length = 399 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 179/383 (46%), Gaps = 31/383 (8%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ A++ N + L N AVVK + YG + ++ G V Sbjct: 26 QRAWIEVSRKAIEANVRKLRSKLKNNCEFMAVVKADGYGHDAKVVSENAIRGGASQLGVA 85 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 +++EG+KLR + I VL ++ I F +L+P +SS+ + +++ + Sbjct: 86 TLKEGIKLRSSSINVPILVLGNLYAKKDLLICFRNDLMPTVSSIRECLICNEIGKINNMK 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177 L++DTG +RLG E + +N + K + I SHLACAD+ + Sbjct: 146 FSLHLKIDTGMSRLGFECDEFVQQFNNIKSLKNIDVKGIYSHLACADEKNALNPKSRTQL 205 Query: 178 QLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSH 230 Q E+F+ I + K I+ LA+S+G++LG N+HF + R G+++YG IN + Sbjct: 206 QREKFQELLKLVSIDNTKNIKIHLANSAGMILGKNFHFDMVRVGLAMYGYDPLINTTEKS 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + +A++ +R G VSYG + R + +AV +IGYADG +LSG S Sbjct: 266 LLKPALFLKAKVTFVRTIEKGVGVSYGNKFVSDRKTKLAVLSIGYADGIIRSLSGKIS-- 323 Query: 291 SPSVFLGGKGFIKGYM-VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 I P +G ITMD M DITDS I+VG + + G D I D Sbjct: 324 ----------LIHNKKLYPQVGSITMDQMMVDITDSEDIKVGSTMLLLGSDGEQTISPID 373 Query: 346 VALASGTTNYDLLVRIGTRYAKF 368 A + +++L R + Sbjct: 374 WAHKCDSIPWEILCSFKNRLPRV 396 >gi|326333138|ref|ZP_08199387.1| alanine racemase [Nocardioidaceae bacterium Broad-1] gi|325949121|gb|EGD41212.1| alanine racemase [Nocardioidaceae bacterium Broad-1] Length = 394 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 151/384 (39%), Gaps = 32/384 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + IDL A+++N + VVK + YG G + A G V S Sbjct: 12 RRAEIVIDLAAIRHNVSRLKEHL-RTPIMMVVKADGYGHGLVQAGRAAREGGADWLGVAS 70 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 +E + LR + R+ + + + ++ +V L ++ G + Sbjct: 71 ADEALALRAAGDEGRLLAWLIMPSEPAEDLVAADIDVTAYTVADLEKFAAAGDALGRTPR 130 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLE 180 L+VDTG +R G + + + + + I SH + +++ + +++Q + Sbjct: 131 VQLKVDTGLSRGGAAFADWGNLVARARILEAEGAIRVTGIWSHFSASENTADPASALQEK 190 Query: 181 RFRT--LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F ++ G+ LA+S+G LL P+ L R GI+ YG Sbjct: 191 VFGEALAVAEEAGLRPEVRHLANSAGALLRPSARLDLVRVGIATYGIDPAPGVEGSPWDE 250 Query: 236 ------VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 +T A + L+++ AG VSY + + + +GYA+G S Sbjct: 251 LGLVPAMTVRAELALVKQIEAGAGVSYNHTWVAEEPTTVGLIPVGYAEGIQRRAGNRAS- 309 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 ++ G P+ G + MD + D+ D+ +E G + ++G + D Sbjct: 310 ----------VWVDGARRPVRGTVCMDQIVVDLGDTA-VEPGAEVVLWGTGADGEPTAQD 358 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A AS T Y+++ RIG R + Y Sbjct: 359 WAEASETIAYEVVTRIGGRMKRRY 382 >gi|304405127|ref|ZP_07386787.1| alanine racemase [Paenibacillus curdlanolyticus YK9] gi|304346006|gb|EFM11840.1| alanine racemase [Paenibacillus curdlanolyticus YK9] Length = 391 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 152/383 (39%), Gaps = 29/383 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R +I L AL+ N + A VK NAYG G IA GV V Sbjct: 6 RATRAEISLDALRVNLTAFRQAIPEGMLLMASVKANAYGHGAVGIAREAEAFGVDYMGVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++LR I VL + + D ++ + L + L G Sbjct: 66 FLDEAIQLRQAGITKPILVLGYVPAAGLAVARDYDITIALFRYDILEAAAALPENGKQLA 125 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D+G RLG+ EA F + K ++ + +H + AD+ Q ERF Sbjct: 126 VHIKIDSGMGRLGMLPGLEAERFIERALTVKQLRVEGLFTHYSKADELDKAYTEQQYERF 185 Query: 183 RTLIS--HYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKI---NKSHPMQT 234 ++ + SL ++ G PN+ + R GI +YG K ++ Sbjct: 186 NGVVDYVRNNALPISLFHAANSATGIDTPNWGHGMLRLGIGMYGLYPSAQVNQKEIALEP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V++ + + + + A +SYG + + I IGYADG+ LSG Sbjct: 246 VMSLKTAVAMTKTAPEHWGISYGARYVTSGQERIGTLPIGYADGFSRMLSG--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGPD----IKLDDV 346 + ++G VPILG I MD M + + ++ + + I G I DD+ Sbjct: 297 --KAEALVRGTRVPILGTICMDQCMIALDPAEQGGVQVQADEEVVIMGRQGDEVITADDI 354 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A GT NY++ + R + + Sbjct: 355 ADKLGTINYEVTCMLAARVPRVF 377 >gi|149202594|ref|ZP_01879566.1| alanine racemase [Roseovarius sp. TM1035] gi|149143876|gb|EDM31910.1| alanine racemase [Roseovarius sp. TM1035] Length = 345 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 178/366 (48%), Gaps = 30/366 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A+ NW +++A+ + TAAVVK +AYGLG ++AP L AG + FFV E Sbjct: 4 ATLTIDLDAIVANWRALDAM-NTSETAAVVKADAYGLGAARVAPTLARAGARHFFVAVAE 62 Query: 67 EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG LR I+V G PG +++ LIP+I+S+ Q+ + HP+ Sbjct: 63 EGAPLRETLGAVPAIYVFSGHMPGDAEMLRAHKLIPMINSLDQM---IRHAEALPGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + + +LI+SHLACAD+P +N QL FR + Sbjct: 120 IQLDSGMNRLGMEPAEWAALRQIALAQ---NPTLIMSHLACADEPDHAMNPQQLATFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + S A++ GILL YHF L RPGI +YGG VVT E +I Sbjct: 177 TDG-LDVPRSFANTGGILLDAAYHFDLARPGIGVYGGRPFDAA----HPVVTLEIPVIQC 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R L GE V Y R + IA A GYADG + + Sbjct: 232 RDLLPGETVGYANSFTANRPTRIATVAAGYADGILRAMG-----------PKTSLWADDT 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQ--IFGPDIKLDDVALASGTTNYDLLVRIGT 363 PI G+I+MD+ DITD D + GP +D +A +GT Y++L +G Sbjct: 281 PCPIAGRISMDLICVDITDLGH----DPASLNLLGPHQTIDTLADNAGTIGYEILTSLGA 336 Query: 364 RYAKFY 369 RY + Y Sbjct: 337 RYTRRY 342 >gi|254488701|ref|ZP_05101906.1| alanine racemase [Roseobacter sp. GAI101] gi|214045570|gb|EEB86208.1| alanine racemase [Roseobacter sp. GAI101] Length = 376 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 188/364 (51%), Gaps = 26/364 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A+ NWH +N +S +T AVVK +AYGLG +++AP L G + FFV + + Sbjct: 36 ATLTIDLHAIAANWHMLNRMSQG-QTGAVVKADAYGLGIDRVAPVLAQEGARQFFVATTK 94 Query: 67 EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I + G PG + I L P+I+SV Q + HP+ Sbjct: 95 EGVALRRVLGPGPAINLFAGHMPGDAEKIRSAQLTPMINSVDQ---LIGHVETLPGHPFG 151 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQ++TG NRLG+ E + ++ + SHLACAD+P +N+ QL+ FR + Sbjct: 152 LQLNTGMNRLGMDASEWGALRDIALSQHPRLII---SHLACADEPGHKMNAAQLKSFRDM 208 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + I SL ++ GILLG +YHF LTRPGI LYGG ++ Q VVT + +I + Sbjct: 209 TAG-LKIPLSLGATGGILLGADYHFSLTRPGIGLYGGLPFVDA----QPVVTLDLPVIQV 263 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ AG V Y R S IA + GYADG + G G Sbjct: 264 REVPAGGSVGYACGWIAPRPSRIATVSGGYADGLIRAMGN-----------GATMTHNGT 312 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 VP++G+++MD+ DIT G ++Q+ G +D VA +GT Y++L +G RY Sbjct: 313 KVPVVGRVSMDLITVDITTLTD-TPG-HLQLLGQHQSVDTVAGFAGTIGYEILTSLGPRY 370 Query: 366 AKFY 369 + Y Sbjct: 371 DRVY 374 >gi|257453404|ref|ZP_05618699.1| alanine racemase [Enhydrobacter aerosaccus SK60] gi|257449156|gb|EEV24104.1| alanine racemase [Enhydrobacter aerosaccus SK60] Length = 361 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 160/369 (43%), Gaps = 23/369 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + IDL AL +N + + A+ A+VK NAYG G PA+ V ++E Sbjct: 6 ITIDLAALTHNLQRVKDYAPTAKVLAMVKANAYGHGAVNCLPAVAQ--ADALGVACLQEA 63 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++L+ Q + V+ G E + I + + ++ L++ Sbjct: 64 LELQQAGWQKLMVVIEGAFSLAEWQYCTAHQIECVVHHQRQLDWALQQPAKKGATVWLKL 123 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NRLG ++ E + + ++ +H A AD N Q E F + + Sbjct: 124 NTGMNRLGFTVGEIKEIAQQLTSSG--YEIVLTTHFANADVIDHPNNQQQFELFDSTLQM 181 Query: 189 -----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEA 240 I+ SL +S+GI+ + H+ RPGI LYG T K +Q V+ A Sbjct: 182 LREQVNPAIKGSLCNSAGIVNWSDRHYDWVRPGIILYGATPVNHATAKQLNLQPVMHFNA 241 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I AG+ V YG + + I + ++GYADGYP +S Sbjct: 242 SIMAIHTLKAGDSVGYGSRWTAQAPARIGIISVGYADGYPRVISD-----------DAYV 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G PI+G++ MDM M D+T + + + +Q++G +D+V + T +Y+LL Sbjct: 291 VVAGQQAPIIGRVAMDMLMVDLTHTTEVNLDCPVQLWGNAPSIDEVGSWNDTISYELLSV 350 Query: 361 IGTRYAKFY 369 + R Y Sbjct: 351 VTRRPTWIY 359 >gi|83942625|ref|ZP_00955086.1| alanine racemase [Sulfitobacter sp. EE-36] gi|83846718|gb|EAP84594.1| alanine racemase [Sulfitobacter sp. EE-36] Length = 344 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 191/364 (52%), Gaps = 26/364 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A+ NW ++N ++G T AV+K NAYGLG +++AP L G + FFV E Sbjct: 4 ATLSIDLNAIAANWQALNKMTG-CDTGAVIKANAYGLGVDRVAPVLAAQGARKFFVAVAE 62 Query: 67 EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I V G PG +I L P+I+SV Q+ + H + Sbjct: 63 EGVALRRVLGPGPAINVFAGHMPGDADMIRSAALTPMINSVDQM---IAHVEALPGHRFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+++G NRLG+ E + + +LI+SHLACAD+P+ +N+ QL+ FR + Sbjct: 120 VQLNSGMNRLGMDPAEWAALRDIALAQ---NPTLIMSHLACADEPNHPMNARQLKTFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SLA++ GI+LG +YHF LTRPGI +YGG + VVT + +I + Sbjct: 177 TDG-LNVPRSLAATGGIMLGRDYHFDLTRPGIGVYGGLPFADA----MPVVTLDVPVIQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ G+ V YG R +L+A A GYADG L + +G Sbjct: 232 REVATGQPVGYGCAWTAPRPTLVATVAAGYADGLIRALGNGATFTH-----------EGR 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +P++G+++MD+ D+T + ++Q+ G +D VA +GT Y++L +G RY Sbjct: 281 KLPVVGRVSMDLITVDVTSLTEVPE--HLQLIGNYQSVDTVAGFAGTIGYEVLTALGARY 338 Query: 366 AKFY 369 + Y Sbjct: 339 DRVY 342 >gi|296111091|ref|YP_003621472.1| alanine racemase [Leuconostoc kimchii IMSNU 11154] gi|295832622|gb|ADG40503.1| alanine racemase [Leuconostoc kimchii IMSNU 11154] Length = 374 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 162/378 (42%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++IDL A++ N + + R AVVK +AYG G + ALY+ G++DF V + Sbjct: 10 RPTWIEIDLKAIQYNARLIMKHADATRMIAVVKADAYGHGAVAVTKALYDIGIRDFAVAT 69 Query: 65 VEEGVKLRLY--TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + E + LR I +L Q K++ + L+P + ++ L ++ Sbjct: 70 ISEALILRQEVDHDDFNILLLGVQDVSQVKLMVENRLMPAVGTLEWLYQAVSFLTDSQIL 129 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G + Q + + H +L+ + +H A ADD + Q+ + Sbjct: 130 DVHLAVDTGMGRMGANSQADVTELYHFIQKSSQLRLNGVFTHFATADDDNEAYYKQQVTK 189 Query: 182 FRTLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTV 235 ++ + S S + R G LYG + ++ S ++ V Sbjct: 190 LYQWVNGAGIPKKYWHLANSGSALWHHNEIDTDTIRVGSVLYGFNPGSPALDMSIKLKNV 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ ++R+ + + AGE VSYG +A IGYADGY + G+ Sbjct: 250 LSLKSRMGAVHQLQAGESVSYGATYTAEHAQWVATLPIGYADGYLRRMGGM--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 K + G ++G+ITMD + + + G + + G D I ++D A +G Sbjct: 301 ---KVLVSGEEAQVVGRITMDQIVIALDKQYPV--GTEVTLIGRDGDEKITIEDFATYAG 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++L G R + Y Sbjct: 356 TIPHEILTSFGVRLPRIY 373 >gi|329119158|ref|ZP_08247848.1| alanine racemase [Neisseria bacilliformis ATCC BAA-1200] gi|327464717|gb|EGF11012.1| alanine racemase [Neisseria bacilliformis ATCC BAA-1200] Length = 351 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 17/365 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +I L L+ N+ ++ + G + AV+K +AYG G + A AL + F V Sbjct: 2 RPLCAEIRLDRLRENYQTLKQIHGG-KMLAVLKADAYGHGALRCAHALADI-ADGFAVAF 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE +LR I +L G+ E + + + Sbjct: 60 LEEAAELRRGGIANPIVLLEGVFEAAEYAEVERLNLWPVVGNQWQLESLLAHEWQKPVQV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +R G E + SH ACAD+ + +Q E F Sbjct: 120 WLKMDSGMHRTGFFPHEYAPAYTALAQSGKVAAIVKTSHYACADEEERGMTEMQTEAFDL 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 +H G E+ A+S+ L P R G++LYG + + V+ I Sbjct: 180 ACAHLAGEESL-ANSAAALAYPQARRDWGRAGLALYGIDPFLGHDPRFKPVMRLVTEIFG 238 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 + E + YG R + + +AA GYADGYP G + G Sbjct: 239 EKVLQPHEPIGYGASFYTKRSTRVGLAAGGYADGYPRRA-----------ATGTPVAVAG 287 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 ILG+++MDM ++ D +G ++++G + +++VA A+GT Y+LL + R Sbjct: 288 RRSRILGRVSMDMLTLELADHEG--IGSEVELWGDTVDINEVAAAAGTIAYELLCNV-KR 344 Query: 365 YAKFY 369 Y Sbjct: 345 AKFVY 349 >gi|160895760|ref|YP_001561342.1| alanine racemase [Delftia acidovorans SPH-1] gi|226711039|sp|A9BR02|ALR_DELAS RecName: Full=Alanine racemase gi|160361344|gb|ABX32957.1| alanine racemase [Delftia acidovorans SPH-1] Length = 367 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 152/374 (40%), Gaps = 27/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + +A+ AVVK NAYG G E + AL G F + Sbjct: 3 RPILATIHSAALRHNLERVRQAVPDAKLWAVVKANAYGHGIENVFEALR--GADGFAMLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + I +L G+ P ++ ++ + Q+ + + + H Sbjct: 61 LAEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSIWHAVHCDAQIDWLAAHKTQN-GHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERF 182 L++++G NRLG + + + ++H + AD + S QL+RF Sbjct: 120 VFLKMNSGMNRLGFTPERYRAAWARLNALPQVEEISFMTHFSDADAGAGQPGISAQLQRF 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSHPMQTVV---- 236 G + S++ + G + RPGI LYG + + + Sbjct: 180 HDATRDLPGERSVGNSAATLRQGDDALVRCDWVRPGIVLYGSSPDYPQHTAAHWDLQPTQ 239 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +RII +++ G+ V YG + + A GYADGYP Sbjct: 240 TLSSRIIGVQQLTEGQSVGYGSRFTAEGPLRLGTVACGYADGYPRHCG-----------T 288 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351 G + G LG ++MDM D+T +G + ++G + +D+VA A+G Sbjct: 289 GTPVLVNGVRTRTLGCVSMDMLAVDLTPVPDAGMGSEVTLWGRASNGAVLPIDEVAEAAG 348 Query: 352 TTNYDLLVRIGTRY 365 T Y+L+ + R Sbjct: 349 TLGYELMCAVAPRV 362 >gi|270262189|ref|ZP_06190461.1| alanine racemase [Serratia odorifera 4Rx13] gi|270044065|gb|EFA17157.1| alanine racemase [Serratia odorifera 4Rx13] Length = 357 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L+A +NN + + +A+ +VVK NAYG G + + +L F + Sbjct: 3 RPITATLHLSAFENNLQVIRRFAPSAKIWSVVKANAYGHGIKHVWRSLGQ--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G Q+ ++ D + Sbjct: 61 LAEAILLRESGWQGPILLLEGFFKPQDLLLLDRYRLTTSVHSDWQLAAIAAAKLSAPLDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG S + ++SH A AD P + Q+ Sbjct: 121 YLKVNSGMNRLGFSPDRLHSVWLQAREMGNIASLTLMSHFATADGPQG--VAEQMTVIE- 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + + LA+S+ L P H RPGI LYG + +Q +T + Sbjct: 178 GAAAGIPLPRCLANSAATLWHPQTHGSWVRPGIVLYGASPSGQWRDIADSGLQATMTLSS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ +G+ V YG + I V A GYADGYP G Sbjct: 238 EIIGVQALKSGDRVGYGWRYSAKAAQRIGVVACGYADGYPRHA-----------PSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++ G + +G ++MDM D+T ++G ++++G + +DDVA A+GT Y+LL Sbjct: 287 WVDGVLTHTVGTVSMDMLAVDLTHCPGADIGAEVELWGRRLPVDDVAAAAGTLGYELLTA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAARVP 352 >gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310] gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310] Length = 824 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + + ++K +AYG G +IA L + V V +E Sbjct: 465 LEVNLNAVVDNLNHFRSFLKQSTKLVCMIKADAYGAGAVEIAKTLQDHRVDYLAVAVADE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV LR A I V+ K +FD +L P + S L K +P Sbjct: 525 GVTLRKNGITANIMVMNPEMSS-FKTLFDYDLEPEVYSFRLLEALVKAAEKEGITDYPVH 583 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHVNSVQLERFR 183 +++DTG +RLG ++ + + + D ++ Q F Sbjct: 584 IKLDTGMHRLGFDPNNDMERLIERLKHQDAIIPRSVFSHFVGSDSDDFDDFSARQFALFD 643 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +S+GI P + R G+ LYG + N+ + V T Sbjct: 644 MASKQLQAAFQHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGIDPRNNQ--VINHVSTL 701 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R AG+ V Y + K+ DS+IA IGYADG L G Sbjct: 702 KTTILQMRMVKAGDTVGYSRKGKIEHDSMIAAIPIGYADGLNRRLGNRH----------G 751 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 752 YCLVNGQRAYYVGNICMDVAMIDVTGI-DCKEGDQVEIFGDHLPVTVLSDTLETIPYEVL 810 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 811 TGVSNRVKRVY 821 >gi|329894372|ref|ZP_08270242.1| Alanine racemase [gamma proteobacterium IMCC3088] gi|328923168|gb|EGG30491.1| Alanine racemase [gamma proteobacterium IMCC3088] Length = 354 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 165/357 (46%), Gaps = 17/357 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID+ AL+ N + ++ VVK +AYG + IAPAL N F V EG++ Sbjct: 9 IDIEALRANALWLKQHCLGSKLMCVVKADAYGHDLKLIAPALSNI-ADGFAVAHCTEGLE 67 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR P A I VL G E + + V + ++VDT Sbjct: 68 LRAINPTAPILVLEGTFDAAELNAAYQHDLTVALTNTWQVRDYLARPLDQRPTVWVKVDT 127 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 G +RLGLS E + +L Q +++ +H + AD + ++QL R T + Sbjct: 128 GMHRLGLSETELNAL---CRDNRLPQDTVLFTHFSDADTDAEK-TALQLAR-LTRLGERH 182 Query: 191 GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALA 250 + S A+S L+ PN H RPG SLYGG+ + ++ V++ RI IR Sbjct: 183 KLMMSAANSPACLMHPNTHLDWVRPGYSLYGGSPLAHIEDNLRPVMSVYTRIHSIRSLPV 242 Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310 GE V YG R S IA IGYADGYP ++ G K ++ P++ Sbjct: 243 GECVGYGSTWCAERASKIATLPIGYADGYPRSIK-----------SGTKVWLHNQFAPVV 291 Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 G+++MD+ D+TD + + GD ++++G + L +A + + Y+++ RI R + Sbjct: 292 GRVSMDLLTIDVTDIPAAKAGDLVEVWGQHMTLHALANHNELSGYEIMARIPKRLPR 348 >gi|238794498|ref|ZP_04638107.1| Alanine racemase, catabolic [Yersinia intermedia ATCC 29909] gi|238726181|gb|EEQ17726.1| Alanine racemase, catabolic [Yersinia intermedia ATCC 29909] Length = 358 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 158/366 (43%), Gaps = 20/366 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + + L+AL +N + +G A+ +VVK NAYG G +I AL F + Sbjct: 2 SRPISATLHLSALSHNLSIVRRHAGAAKIWSVVKANAYGHGLARIWQALDA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E + LR Q I +L G Q+ + D + + Sbjct: 60 DLNEAIMLREQGWQGPILLLEGFFRTQDLALVDHYRLTTVVHSDWQLDAINAARLTAPPN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + +A + + ++SH A AD+ S Q R + Sbjct: 120 IYLKLNSGMNRLGFPIGQADAVWQWANSISNIGEVTLMSHFANADNHMGA--SEQFTRIQ 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAE 239 S + A+S+ IL P H+ RPGI LYG + + + ++ V+ Sbjct: 178 Q-ASGHIAAARCFANSAAILRNPETHYDWVRPGIILYGASPSGDVNDIAGIGLRPVMGLH 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II + AG V YG + T I V A GYADGYP G Sbjct: 237 SEIIATQMLSAGHSVGYGSRYSATGTQRIGVVACGYADGYPRLA-----------PSGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + +G I+MDM D+T +VG ++I+G ++ +DDVA A+GT Y+L+ Sbjct: 286 IRVDGILTHTVGSISMDMLTVDLTPCPQAQVGSKVEIWGDNLPIDDVAAAAGTVGYELMC 345 Query: 360 RIGTRY 365 + +R Sbjct: 346 ALASRV 351 >gi|319790926|ref|YP_004152566.1| alanine racemase [Variovorax paradoxus EPS] gi|315593389|gb|ADU34455.1| alanine racemase [Variovorax paradoxus EPS] Length = 366 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 148/373 (39%), Gaps = 27/373 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + AL+NN + + +AR AVVK NAYG G E++ L G F + Sbjct: 3 RPILATVHTAALRNNLERVRRSALDARVWAVVKANAYGHGIERVYEGLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + + +L G+ ++ +L + Q+ + + Sbjct: 61 LAEAERVRALGWRGPVLLLEGVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTL-KPQR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + +++H + AD + QLE F Sbjct: 120 VFLKMNSGMNRLGFTPERFGSAWTRLNALTQVDEISLMTHFSDADGARGI--AHQLEAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV----VTAE 239 G + S++ + RPGI LYG +T Sbjct: 178 RATRDLPGERSIANSAATLRHADQTRGDWVRPGIVLYGSAPDFPLHDAAHWQLQPTMTLS 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +++ ++ AG+ + YG I VAA+GYADGYP + G Sbjct: 238 TQLLSVQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYPRHCN-----------TGTP 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTT 353 + G ++G+++MDM D+T + G + ++G + +D+VA A+GT Sbjct: 287 VLVNGVRTRMVGRVSMDMITVDLTPVPDAKFGAEVTLWGRSASTGAVLPIDEVAQAAGTV 346 Query: 354 NYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 GYELMCAVAQRVP 359 >gi|33355854|gb|AAQ16274.1| serine racemase [Enterococcus faecalis] gi|77380201|gb|ABA71733.1| VanTG [Enterococcus faecalis] Length = 712 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 165/373 (44%), Gaps = 29/373 (7%) Query: 9 LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L L++N +++ A+S AVVK AYG G ++ L GV F V +++E Sbjct: 347 LEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDE 406 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G++LR Y + I +L P + K + L + + G ++ Sbjct: 407 GIRLRKYGISSEILILGYTSPSRAKELCKYELTQTLIDYRYSLLLN---KQGYDIKAHIK 463 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA--CADDPSSHVNSVQLERFRTL 185 +DTG +RLG S ++ K + + A ++ + Q+ F + Sbjct: 464 IDTGMHRLGFSTEDKDKILAAFSLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKV 523 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236 + K + + SS G+L P R G++LYG DK ++ V+ Sbjct: 524 LDWLKSSGLNIPKVHIQSSYGLLNYPELECDYIRVGVALYGVLSSTNDKTKLELDLRPVL 583 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +A+++LIRK GE V Y TRDSLIA+ IGYADG+P LS Sbjct: 584 SLKAKVVLIRKIKQGESVGYSRAFTATRDSLIAILPIGYADGFPRNLS----------CG 633 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 I G PI+GKI MD D+TD +++ G + G +I VA ++ + Sbjct: 634 NSYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAES 693 Query: 353 TNYDLLVRIGTRY 365 +LL R+G R Sbjct: 694 ITNELLSRMGHRL 706 >gi|190891117|ref|YP_001977659.1| alanine racemase [Rhizobium etli CIAT 652] gi|190696396|gb|ACE90481.1| alanine racemase protein [Rhizobium etli CIAT 652] Length = 333 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 160/328 (48%), Positives = 219/328 (66%), Gaps = 2/328 (0%) Query: 44 GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103 G E ALY AG +DFFV +V+EGV LRLY P+ARIFVL GI PG E+ FD +L+PVI Sbjct: 2 GIEDAGEALYTAGARDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVI 61 Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163 SS Q F+ +++ +P AL VDTGFNRLGL + +A+ + L++SH Sbjct: 62 SSDEQFAFWMAVLADYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSH 121 Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223 LAC DDPS +N QLE FR + + Y+G+++SLA+S+GI LG +YHF+LTRPGI+LYGG Sbjct: 122 LACGDDPSHAMNRQQLESFRRVTAAYEGVDSSLAASAGIFLGEDYHFELTRPGIALYGGE 181 Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++PM+ V TAEAR+I +R AGE VSYG +L RDS +A+ + GYADGY + Sbjct: 182 VVCGMANPMRPVATAEARVIQVRTVKAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQ 241 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDI 341 S V GG+GFI G+ VP+ G+ITMD+T+FD+TD + GDY+++FG ++ Sbjct: 242 SSGGVPLRQVVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNV 301 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 LDDVA A+GT Y++L +G R+ + Y Sbjct: 302 ALDDVARAAGTIGYEILTSMGLRHERRY 329 >gi|50843722|ref|YP_056949.1| alanine racemase 1 [Propionibacterium acnes KPA171202] gi|289424661|ref|ZP_06426444.1| alanine racemase [Propionibacterium acnes SK187] gi|289427468|ref|ZP_06429181.1| alanine racemase [Propionibacterium acnes J165] gi|295131811|ref|YP_003582474.1| alanine racemase [Propionibacterium acnes SK137] gi|81826355|sp|Q6A5H2|ALR_PROAC RecName: Full=Alanine racemase gi|50841324|gb|AAT83991.1| alanine racemase 1 [Propionibacterium acnes KPA171202] gi|289155358|gb|EFD04040.1| alanine racemase [Propionibacterium acnes SK187] gi|289159398|gb|EFD07589.1| alanine racemase [Propionibacterium acnes J165] gi|291376898|gb|ADE00753.1| alanine racemase [Propionibacterium acnes SK137] gi|313806771|gb|EFS45269.1| alanine racemase [Propionibacterium acnes HL087PA2] gi|313812020|gb|EFS49734.1| alanine racemase [Propionibacterium acnes HL083PA1] gi|313815645|gb|EFS53359.1| alanine racemase [Propionibacterium acnes HL059PA1] gi|313821611|gb|EFS59325.1| alanine racemase [Propionibacterium acnes HL036PA1] gi|313824443|gb|EFS62157.1| alanine racemase [Propionibacterium acnes HL036PA2] gi|313826790|gb|EFS64504.1| alanine racemase [Propionibacterium acnes HL063PA1] gi|313829078|gb|EFS66792.1| alanine racemase [Propionibacterium acnes HL063PA2] gi|313832454|gb|EFS70168.1| alanine racemase [Propionibacterium acnes HL007PA1] gi|314916134|gb|EFS79965.1| alanine racemase [Propionibacterium acnes HL005PA4] gi|314917397|gb|EFS81228.1| alanine racemase [Propionibacterium acnes HL050PA1] gi|314921737|gb|EFS85568.1| alanine racemase [Propionibacterium acnes HL050PA3] gi|314926087|gb|EFS89918.1| alanine racemase [Propionibacterium acnes HL036PA3] gi|314930661|gb|EFS94492.1| alanine racemase [Propionibacterium acnes HL067PA1] gi|314955415|gb|EFS99820.1| alanine racemase [Propionibacterium acnes HL027PA1] gi|314959415|gb|EFT03517.1| alanine racemase [Propionibacterium acnes HL002PA1] gi|314961740|gb|EFT05841.1| alanine racemase [Propionibacterium acnes HL002PA2] gi|314975119|gb|EFT19214.1| alanine racemase [Propionibacterium acnes HL053PA1] gi|314977529|gb|EFT21624.1| alanine racemase [Propionibacterium acnes HL045PA1] gi|314979919|gb|EFT24013.1| alanine racemase [Propionibacterium acnes HL072PA2] gi|314986875|gb|EFT30967.1| alanine racemase [Propionibacterium acnes HL005PA2] gi|315086530|gb|EFT58506.1| alanine racemase [Propionibacterium acnes HL002PA3] gi|315087933|gb|EFT59909.1| alanine racemase [Propionibacterium acnes HL072PA1] gi|315096840|gb|EFT68816.1| alanine racemase [Propionibacterium acnes HL038PA1] gi|315102406|gb|EFT74382.1| alanine racemase [Propionibacterium acnes HL046PA1] gi|315109676|gb|EFT81652.1| alanine racemase [Propionibacterium acnes HL030PA2] gi|327333048|gb|EGE74780.1| alanine racemase [Propionibacterium acnes HL096PA2] gi|327334042|gb|EGE75757.1| alanine racemase [Propionibacterium acnes HL096PA3] gi|327444331|gb|EGE90985.1| alanine racemase [Propionibacterium acnes HL013PA2] gi|327446804|gb|EGE93458.1| alanine racemase [Propionibacterium acnes HL043PA2] gi|327448756|gb|EGE95410.1| alanine racemase [Propionibacterium acnes HL043PA1] gi|327455097|gb|EGF01752.1| alanine racemase [Propionibacterium acnes HL087PA3] gi|327456233|gb|EGF02888.1| alanine racemase [Propionibacterium acnes HL083PA2] gi|328755932|gb|EGF69548.1| alanine racemase [Propionibacterium acnes HL087PA1] gi|328757652|gb|EGF71268.1| alanine racemase [Propionibacterium acnes HL020PA1] gi|328759003|gb|EGF72619.1| alanine racemase [Propionibacterium acnes HL025PA2] gi|328759903|gb|EGF73492.1| alanine racemase [Propionibacterium acnes HL099PA1] gi|332676676|gb|AEE73492.1| alanine racemase [Propionibacterium acnes 266] Length = 375 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|33864030|ref|NP_895590.1| alanine racemase [Prochlorococcus marinus str. MIT 9313] gi|33635614|emb|CAE21938.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9313] Length = 398 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 109/381 (28%), Positives = 173/381 (45%), Gaps = 28/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++++ A++ N S+ L + AVVK + YG G +A A G + V Sbjct: 26 RQRAWVEVNPAAVEANCRSLRRHLCESCALMAVVKADGYGHGALTVARAALQGGAKSLGV 85 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EG++LR A + VL H K L+P +SS+ + L G Sbjct: 86 ATLQEGIELRQAGHNAPVLVLGNLTHSEDLKACLHWQLMPTLSSMREALLCQNLADGSGR 145 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP----SSHVNS 176 L++DTG RLG L+EA + +L I SHLA AD ++ V Sbjct: 146 QFRIQLKIDTGMTRLGCELKEAPMLVEAIGHLNQLELKGIYSHLALADGDLQGKAAMVTD 205 Query: 177 VQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SH 230 Q + F T++ + G LA+S+G L H+ + R G++LYG + + Sbjct: 206 QQQQHFETVLRTLPEQHNGFTRHLANSAGTLRDRGLHYDMVRVGLALYGHSPNLQLQGKV 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 +Q ++ +AR+ LIR AG VSYG + R S +AV IGYADG +LSG S Sbjct: 266 DLQPALSVKARVTLIRDVPAGVGVSYGHRFTTRRPSRLAVVGIGYADGVSRSLSGQISAI 325 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + G ++P +G ITMD + D T+ +EVG + + G D I Sbjct: 326 A-----------DGQLLPQVGAITMDQLVLDATNHPDLEVGSIVTLLGKDGDACITPQQW 374 Query: 347 ALASGTTNYDLLVRIGTRYAK 367 + SG+ +++L R + Sbjct: 375 SDLSGSIPWEVLCSFKHRLPR 395 >gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN] gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN] Length = 826 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + ++K +AYG G +IA L V V +E Sbjct: 467 LEVNLNAVVDNLNWYRSFLKPETKLVCMIKADAYGAGAVEIAKTLEEHRVDYLAVAVADE 526 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR ++ I ++ K +FD L P I S L K +P Sbjct: 527 GATLRRNGIKSNIMIMNPEMSS-FKTLFDYELEPEIYSFRLLDALIKAAEKEGITGYPVH 585 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFR 183 ++ DTG +RLG + + + ++ + SH +D+ ++ Q + F Sbjct: 586 IKFDTGMHRLGFNPRTDIAQLIEKLRHQNALIPRSVFSHFVGSDNNDFDSFSAEQFKLFD 645 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +S+GI P + R G+ LYG + N+ + T Sbjct: 646 EGSKQLQSAFSHRILRHIDNSAGIEHFPERQLDMCRLGLGLYGINPRNNEIINNVS--TL 703 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R GE V Y + + +DS+IA IGYADG L Sbjct: 704 KTTILQMRNVPKGETVGYSRRGVIEKDSVIAAIPIGYADGLNRKLGNR----------NC 753 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ + D+T + GD ++IFG ++ + ++ T Y++L Sbjct: 754 YCLVNGQKADYVGNICMDVALIDVTGI-DCKEGDSVEIFGDNLPVTILSNVLETIPYEVL 812 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 813 TTVSNRVKRVY 823 >gi|193211960|ref|YP_001997913.1| alanine racemase [Chlorobaculum parvum NCIB 8327] gi|193085437|gb|ACF10713.1| alanine racemase [Chlorobaculum parvum NCIB 8327] Length = 384 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 164/378 (43%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 I L L++N + A+SG+ R +VK +AYG G ++ L G+++F V Sbjct: 18 NLSEALISLGNLRHNLACIQAISGSRCRIMGIVKADAYGHGAAQVTATLEEEGIREFGVA 77 Query: 64 SVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-G 119 ++ E ++L+ P++RI G + + ++ + + + G Sbjct: 78 NIHEAIELKQSHRMQPESRILAFASPLAGHIEHYLEHDVEMTVCDHETVRTAEAKAAASG 137 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++DTG RLG++ +EA L I +H A + + QL Sbjct: 138 RRLRVQAKIDTGMGRLGVTPEEAHSLLELIDRCPNLDLVGIYTHFAEGH-KAGGFTARQL 196 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPM 232 E+F + Y+ + A+S I+ P+ + RPGI LYG + + P+ Sbjct: 197 EQFLDVTGGYEQRTGRTVLKHAANSGAIVSTPSARLDMVRPGILLYGCHPMDAEPTNVPV 256 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ + +++ ++K AG +SY + IA + GYADG TLS Sbjct: 257 KPVMQFQCKVMFVKKVTAGTSISYSRTWSAPTSTNIATLSAGYADGVHRTLSN------- 309 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASG 351 I G +G +TMD TM D+ + S++VGD +FG + A+A+G Sbjct: 310 ----KATVSIGGNRYHQVGTVTMDQTMVDLGQNRSVKVGDTAVLFGWDGPSAGEQAIAAG 365 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+LL + R + + Sbjct: 366 TISYELLCAVSKRVKRVF 383 >gi|314985124|gb|EFT29216.1| alanine racemase [Propionibacterium acnes HL005PA1] gi|314990744|gb|EFT34835.1| alanine racemase [Propionibacterium acnes HL005PA3] Length = 375 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILNLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|310767806|gb|ADP12756.1| Alanine racemase, catabolic [Erwinia sp. Ejp617] Length = 356 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 154/367 (41%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL+ N +G AR +VVK NAYG G + + +L F + Sbjct: 2 SRPIVATINRAALRQNLAIARYTAGGARLWSVVKANAYGHGIDHVWQSLNE--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G + I D + Sbjct: 60 NLEEAILLRERGWKKPILLLEGFFHPDDLQILDRYRLTTSVHSNWQINALAQAKLSAPID 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + + +++H AD ++ + L+R Sbjct: 120 IYLKMNSGMNRLGFQPERVHGVWQKLRSLENVGELTLMAHF--ADAETAEGVAEPLKRIE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239 + SLA+S+ L P H+ RPGI LYG + +Q V+T Sbjct: 178 Q-AAEGLECPRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWQDIAGSGLQPVMTLT 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +++ AG V YG + + I V A GYADGYP G Sbjct: 237 SEVIAVQQLAAGSGVGYGSRYRANCSQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G ++MDM D+T +G ++++G +IK+DDVA ASGT Y+L+ Sbjct: 286 IRVDGEKTQIVGAVSMDMITVDLTPCPQAGIGSQVELWGDNIKIDDVASASGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] Length = 813 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 110/369 (29%), Positives = 164/369 (44%), Gaps = 23/369 (6%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL++N + L + + A+VK +YG G +IA L V V +E Sbjct: 457 LEINLNALEHNLNVYRGLVPKDVKMMAMVKAFSYGSGSFEIANLLQFNQVDYLTVAYADE 516 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126 GV+LR I V+ E ++ + S F S + G + P + Sbjct: 517 GVELRNAGITLPIVVMSPDENAFESVVQHNLEPEIYSFRILHAFISFVRIKGLKNFPIHI 576 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL---ERF 182 +VDTG +RLG EA + + ++ SHLA A+ + + Q+ ++F Sbjct: 577 KVDTGMHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLASAANSQDNAFTAEQILKLDQF 636 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + G +A++SGI L P+ +F + R GI +YG +QTV + Sbjct: 637 AKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMYGVEAS-RTDLSLQTVGVLKT 695 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I+ A E V Y L RDS IA IGYADGY GK Sbjct: 696 NVTQIKHIPASETVGYNRHGVLYRDSKIATIKIGYADGYDRRFGNGV----------GKM 745 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G++VP +G I MDM M D+TD + D + +F PDI A + GT Y+LLV Sbjct: 746 LVNGHLVPTVGDICMDMCMLDVTDIA-VSEEDEVVVF-PDITAA--ANSIGTIPYELLVN 801 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 802 ISQRVKRVY 810 >gi|331265917|ref|YP_004325547.1| alanine racemase [Streptococcus oralis Uo5] gi|326682589|emb|CBZ00206.1| alanine racemase [Streptococcus oralis Uo5] Length = 367 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 25/376 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I L A++ N H M AVVK NAYG G +A A+ + V F V Sbjct: 6 HRPTKALICLEAIQQNIHQMGVHIPEGTLKWAVVKANAYGHGAVAVAKAIQD-DVDGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR RI +L + + ++ ++ + + + Sbjct: 65 SNIDEAIELRQARLSKRILILGVSEIEAIGLAKEYDITLTVAGLEWVRALVATGADLSGL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++D+G R+G + + + ++ I +H A AD+ S + QLERF Sbjct: 125 SVHLKIDSGMGRIGFREASEAEQAQDLLKQHGARVEGIFTHFATADEESDTYFNNQLERF 184 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVT 237 + +++ K + ++S+ L F R G ++YG ++ + + +T Sbjct: 185 KAILASMKEVPELVHASNSATTLWHAETIFNAVRMGDAMYGLNPSGEVLDLPYDLTPALT 244 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ ++ ++ LAG + YG + + +IA IGYADG+ + Sbjct: 245 LESALVHVKTVLAGACMGYGATYQADSEQIIATVPIGYADGWTRDMQNFS---------- 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G PI+G+++MD + + G + + G +I VA GT Sbjct: 295 --VLVDGQACPIVGRVSMDQITIRLPKVYPL--GTKVTLIGTNGDKEITATQVAAYRGTI 350 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 351 NYEVVCLLSDRIPREY 366 >gi|157273511|gb|ABV27410.1| alanine racemase [Candidatus Chloracidobacterium thermophilum] Length = 398 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 158/380 (41%), Gaps = 29/380 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSV 65 +IDL L+ N+ + +G A+VK NAYG G +A L + A F V + Sbjct: 9 AWAEIDLARLRQNYQWLRQQAG-VPVMAMVKANAYGHGLLPVATFLQDVAKADWFGVATP 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124 EEG+ LR I VL G GQE I +L + + + G S Sbjct: 68 EEGIALRRAGITRPILVLGGFWFGQEADIVYYDLATTLPDPAYIPALEQAASRAGRSVAI 127 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 L++DTG RLGLS + + +L +++H A AD + Q+ R Sbjct: 128 HLEIDTGIGRLGLSPDQLTAVLERLKSCSHLRLDGLMTHFASADLPEYADFTRDQIRRHA 187 Query: 184 TLISH-----YKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDK----INKSHPMQ 233 + ++ LA+S+G+ P L R G LYG + P Q Sbjct: 188 LALQQVRAAGWEPRYVHLANSAGLHAFLPEAAGNLVRLGGLLYGIAGDALSPVFPPPPTQ 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ ARI+ ++ AG + YG R + +A +GY DG S Sbjct: 248 PVLSLHARILGLKTVPAGTPLGYGCTFVTCRPTRVATVPLGYGDGLHRIQSNR------- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 G+ ++G VPI+G+++MD TM D+TD ++ +GD G I ++ A Sbjct: 301 ----GQAIVRGRKVPIVGRVSMDTTMLDVTDVPNVTLGDVATFIGRQGETTITAEEYAAV 356 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 G+ + + R ++Y Sbjct: 357 MGSIALEATTALTARLPRWY 376 >gi|197263989|ref|ZP_03164063.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242244|gb|EDY24864.1| alanine racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 356 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCS---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+ +G ++++G +IK+DDVA ASGT Y+LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLMPCPQAGIGTPVELWGKEIKVDDVASASGTLGYELLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603] gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 151/354 (42%), Gaps = 21/354 (5%) Query: 25 ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84 L + + A+VK +YG G ++A L GV V ++EG+ LR I VL Sbjct: 478 KLGPDVKIMAMVKAFSYGSGSFEVANLLQFNGVDYLAVAYIDEGIALRNAGITLPIMVLN 537 Query: 85 GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SHPYALQVDTGFNRLGLSLQEA 142 + + L P I S + K ++P +++D+G +RLG E Sbjct: 538 P-EASAFDKLVEFTLQPEIYSFTLFDEFVKFAQLKNIFNYPIHIKIDSGMHRLGFEDFEI 596 Query: 143 LDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTLISH-----YKGIEASL 196 + + I SHLA +D + Q+ F + + Sbjct: 597 ETLCDLLEQNQYVHIQSIFSHLAGSDAEMHDEFTLKQIMVFEKAYHQIEKVLNYKVMRHM 656 Query: 197 ASSSGILLGPNYHFQLTRPGISLYGGTDKI-NKSHPMQTVVTAEARIILIRKALAGELVS 255 A++S I P F + R GI LYG I N+++ +Q V T + + ++K AGE + Sbjct: 657 ANTSAITRWPVAQFDMVRLGIGLYGIDSAIKNEANQLQPVATLKTSVSQVKKIKAGETIG 716 Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315 Y L D IA IGYADGY GK IKG +VP +G ++M Sbjct: 717 YNRNGSLLADGKIATVRIGYADGYLRAFGNGV----------GKMLIKGVLVPTVGNVSM 766 Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 DM M D++ ++ GD + +F + K+++VA T Y++L + R + Y Sbjct: 767 DMCMLDVSAV-EVKEGDEVVVFNEEYKIEEVAKQINTIPYEILTNVSQRVKRVY 819 >gi|89068949|ref|ZP_01156331.1| alanine racemase [Oceanicola granulosus HTCC2516] gi|89045530|gb|EAR51594.1| alanine racemase [Oceanicola granulosus HTCC2516] Length = 345 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 129/361 (35%), Positives = 185/361 (51%), Gaps = 26/361 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL NW +++A+ G+A T AVVK + YGLG +A L+ AG + FFV EEG Sbjct: 6 LTIDLDALAANWRALDAM-GSAETGAVVKADGYGLGVAPVARTLHKAGARRFFVAVAEEG 64 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 LR P + V G PG ++I D L+P+++S+ Q+ + HP+ +Q Sbjct: 65 AALRQALGPNVDVCVFGGHMPGDSEMIGDLGLVPMLNSLEQVL---RHFEALPGHPFGIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG+ + E + + + L++SHLACAD+P +N+ QL F + Sbjct: 122 LDTGMNRLGMEMSEWAAVAEIALQQ---KPVLVMSHLACADEPDHEMNTRQLAEFHRMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ GILLG Y F LTRPGI LYGG + VVT E +I +R Sbjct: 179 G-IKVPRSLAATGGILLGQEYQFDLTRPGIGLYGGRPFEEA----RPVVTLELPVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R + +A A GYADG LS S + Sbjct: 234 VEPGESVGYGNSWIAERRTRLATVAAGYADGITRHLSNRASL-----------WHGDAPC 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 PI G+++MD+ DITD D + + +DD+A +GT Y++L ++G RY + Sbjct: 283 PIRGRVSMDLICADITDLPE--TPDSLALLNGRQGVDDIADIAGTIGYEVLTQLGPRYTR 340 Query: 368 F 368 Sbjct: 341 R 341 >gi|254460815|ref|ZP_05074231.1| alanine racemase [Rhodobacterales bacterium HTCC2083] gi|206677404|gb|EDZ41891.1| alanine racemase [Rhodobacteraceae bacterium HTCC2083] Length = 344 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 181/362 (50%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW +++ S A T AVVK +AYG G + A L G + FFV EE Sbjct: 6 LSIDLAAIAANWSALDRFS-TAETGAVVKADAYGTGIGRAARRLAQTGARKFFVAVAEEA 64 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R P I++L G G +I D +LIP++SS+ Q+ + P+ +Q Sbjct: 65 ADIRQAIGPDPEIYILSGHMSGDTDMIADLHLIPLLSSIDQML---RHFEALPGTPFGIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG+ E + LI+SHLACADDPS +N+ QL F + Sbjct: 122 LDTGMNRLGMEAGEWEAVKSLVLPQNPM---LIMSHLACADDPSHPMNAQQLAAFIEMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 SLA++ GILLGP YHF +TRPGI LYGG + + VV+ II R Sbjct: 179 GIDA-PRSLAATGGILLGPEYHFDVTRPGIGLYGGLPFADAT----PVVSLSLPIIQTRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 LAGE V YG RDS I + GYADG + F G V Sbjct: 234 VLAGESVGYGNTWIAERDSRIVTVSCGYADGILRVMG-----------PKTHFFANGTAV 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P+ G+I+MD D+TD + +++ GP ++ +A +GT Y++L +G RY++ Sbjct: 283 PVAGRISMDSICIDVTDVSDLP--SALELLGPQQSIETLAQNAGTIGYEILTSLGARYSR 340 Query: 368 FY 369 Y Sbjct: 341 RY 342 >gi|238797371|ref|ZP_04640871.1| Alanine racemase, catabolic [Yersinia mollaretii ATCC 43969] gi|238718802|gb|EEQ10618.1| Alanine racemase, catabolic [Yersinia mollaretii ATCC 43969] Length = 357 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L+AL++N + G+A +VVK NAYG G +I L F + Sbjct: 3 RPIAATLHLSALRHNLSLIRRHVGSANIWSVVKANAYGHGLARIWQGLDA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR Q I +L G Q+ + D + Sbjct: 61 LNEAILLREQGWQGPILLLEGFFQPQDLALLDHYRLTTTVHSDWQLEAINAARLSAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +A + + ++SH A AD+ Q R + Sbjct: 121 YLKLNSGMNRLGFPVGQADAVWQWANSLSNVGEVTLMSHFANADNHIGA--GEQFSRIQQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 S + A+S+ IL P H+ RPGI LYG + + ++ V+ ++ Sbjct: 179 -ASGHIPAARCFANSAAILRNPETHYDWVRPGIILYGASPSGDIADIAGIGLRPVMQLQS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II I+ AG V YG + + I V A GYADGYP G Sbjct: 238 EIIAIQALSAGHQVGYGSRYSASGSQRIGVVACGYADGYPRLA-----------PSGTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T +VG ++I+G + +D+VA A+GT Y+L+ Sbjct: 287 RVDGVLTQTVGAISMDMLTVDLTPCPQAQVGSQVEIWGETLPIDNVAAAAGTVGYELMCA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAARVP 352 >gi|296875898|ref|ZP_06899959.1| alanine racemase [Streptococcus parasanguinis ATCC 15912] gi|296433139|gb|EFH18925.1| alanine racemase [Streptococcus parasanguinis ATCC 15912] Length = 370 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 153/378 (40%), Gaps = 25/378 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + ++DL A+ N ++ + AVVK NAYG G + L V F Sbjct: 5 KHRPTVARVDLDAIAFNVQQVSEHIPSQALKYAVVKANAYGHGVVAVTQKLAPQ-VDGFC 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V++++E +++R Q I +L + + + ++ ++S+ L + Sbjct: 64 VSNMDEALEIREEGLQHPILILGVVPSETVNLAKEHDIRLTVASLAWLDQLLGEEADLSG 123 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VD+G R+G E + ++ I +H A AD+ Q Sbjct: 124 LKVHIKVDSGMGRIGFRTIEDIKVAERLLLAAGAEIEGIFTHFATADEADDRKFQAQYHF 183 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F+ +++ + + + +S+ L + F R G +YG + + ++ + Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYGLNPSGSVLALPYEIKPAL 243 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + ++ +++ AG+ + YG I IGYADG+ + Sbjct: 244 SLVSELVHVKQLEAGQDIGYGATYTTEESQWIGTIPIGYADGWIREMQNF---------- 293 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 IKG PI+G+++MD + + L + G + + G +I +VA GT Sbjct: 294 --HVLIKGDYCPIVGRVSMDQVTVRLPEELPL--GTKVTLIGREGEKEITATEVADYRGT 349 Query: 353 TNYDLLVRIGTRYAKFYT 370 NY+++ + R + YT Sbjct: 350 INYEVVCLLSDRIPRDYT 367 >gi|188595861|pdb|2VD8|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus Anthracis (Ba0252) gi|188595862|pdb|2VD8|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus Anthracis (Ba0252) Length = 391 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 152/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + AVV NAYG +A AG Sbjct: 3 MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVXGNAYGHDYVPVAXIALEAG 62 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + L Sbjct: 63 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ + E F + +L + +H A AD+ + Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q F +S A+S+ L F R GI++YG + + Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242 Query: 228 -KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ + I++ + G+ +SY + + IA AIGYADG+ L G Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 + + G VPI+G++TMD M + + +G + + G I Sbjct: 303 ------------EVLVNGXRVPIVGRVTMDQFMIHLP--CEVPLGTXVTLIGRQGDEYIS 348 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375 >gi|188533687|ref|YP_001907484.1| Alanine racemase, catabolic [Erwinia tasmaniensis Et1/99] gi|226711042|sp|B2VJ52|ALR_ERWT9 RecName: Full=Alanine racemase gi|188028729|emb|CAO96591.1| Alanine racemase, catabolic [Erwinia tasmaniensis Et1/99] Length = 356 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 97/368 (26%), Positives = 163/368 (44%), Gaps = 22/368 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL+ N +G +R +VVK NAYG G +++ +L F + Sbjct: 2 SRPIVATINRAALRQNLAIARQAAGGSRLWSVVKANAYGHGIDRVWQSLAE--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EE + LR + I +L G P +I+ L + S Q+ ++ Sbjct: 60 NLEEAILLRERGWKKPILLLEGFFHPADLEILDRYRLTTSVHSNWQIKALAEAKLSA-PL 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++++G NRLG ++ + + K +++H A A+ + L+R Sbjct: 119 DIYLKMNSGMNRLGFQPEQVNNAWQKLRSLKNVGELTLMAHFADAESTEG--VAEPLKRI 176 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTA 238 + SLA+S+ L P H RPGI LYG + +Q V+T Sbjct: 177 EQ-AAEGLECPRSLANSAATLWHPQTHHDWVRPGIILYGASPSGRWQDIAGSGLQPVMTL 235 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + II +++ AG V YG + + + I V A GYADGYP G Sbjct: 236 TSEIIGVQQLAAGSCVGYGSRYRASGSQRIGVVACGYADGYPRHA-----------PTGT 284 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G M ++G ++MDM D+T +G ++++G +K+DDVA ASGT Y+L+ Sbjct: 285 PIRVDGEMTQVVGAVSMDMITVDLTPCPQAGIGSQVELWGNSVKIDDVASASGTVGYELM 344 Query: 359 VRIGTRYA 366 + R Sbjct: 345 CALAQRVP 352 >gi|86357070|ref|YP_468962.1| alanine racemase protein [Rhizobium etli CFN 42] gi|86281172|gb|ABC90235.1| alanine racemase protein [Rhizobium etli CFN 42] Length = 333 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 161/328 (49%), Positives = 218/328 (66%), Gaps = 2/328 (0%) Query: 44 GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103 G E ALY AG +DFFV +V+EGV LRLY P+ARIFVL GI PG E+ FD +L+PVI Sbjct: 2 GIEDAGEALYLAGARDFFVATVDEGVTLRLYAPEARIFVLSGIWPGTERRFFDNDLVPVI 61 Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163 SS Q F+ +++ +P AL VDTGFNRLGL + +A+ + L++SH Sbjct: 62 SSDEQFAFWMAVLADYGDYPCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSH 121 Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT 223 LAC DDPS +N QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG Sbjct: 122 LACGDDPSHLMNRQQLESFRKVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGE 181 Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++PM+ V T EARII +R AGE VSYG +L RDS +A+ + GYADGY + Sbjct: 182 AVCGVTNPMRPVATTEARIIQVRTVKAGETVSYGRALQLHRDSRLAIVSAGYADGYMRSQ 241 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDI 341 S +V GG+GFI G+ VP+ G+ITMD+T+FD+TD + GDY+++FG ++ Sbjct: 242 SSGGVPLRQAVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNM 301 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 LDDVA A+GT Y++L +G R+ + Y Sbjct: 302 ALDDVARAAGTIGYEILTSMGLRHERRY 329 >gi|269468498|gb|EEZ80156.1| alanine racemase [uncultured SUP05 cluster bacterium] Length = 349 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 158/360 (43%), Gaps = 20/360 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 I +AL +N + ++ ++VK +AYG + P + + V+ + Sbjct: 3 ATASISQSALAHNLSVVRQSCSGSKIVSMVKADAYGHHLTLVDPIIDES--DLLAVSELS 60 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E KLR T + + + + + + V+ + + + + Sbjct: 61 EAQKLREKTDKPILLLSGVYSQDELQSALALDCHVVVH---EKEQINLIAQTKQRIGVWI 117 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++DTG +RLGL E + N L + ++SH ACAD+ N QL F L Sbjct: 118 KIDTGMHRLGLLANEYHECIEAFKNNTLVDVECVMSHFACADEIDHPTNEAQLNEFNQLT 177 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 ++ S+A+S+ IL N F RPGI LYG + ++ V+ A I+ I+ Sbjct: 178 DDS--VKRSMANSAAILSNKNALFDFVRPGIMLYGISPFGTDESNLKPVMELSAPILSIK 235 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 GE V YG + + IA+ IGY DGYP G I G + Sbjct: 236 TIQTGESVGYGATWTADKKTNIAIIGIGYGDGYPRHAKN-----------GTPVCINGEI 284 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++MD+ +I DS++ +VGD + ++G + + + VA S T Y+L+ + +R Sbjct: 285 CPLIGRVSMDLICVNI-DSITAKVGDVVTLWGNEKLSAETVATWSDTIGYELVTGVSSRV 343 >gi|313813897|gb|EFS51611.1| alanine racemase [Propionibacterium acnes HL025PA1] Length = 375 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPCDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|259500992|ref|ZP_05743894.1| alanine racemase [Lactobacillus iners DSM 13335] gi|302190559|ref|ZP_07266813.1| alanine racemase [Lactobacillus iners AB-1] gi|259167686|gb|EEW52181.1| alanine racemase [Lactobacillus iners DSM 13335] Length = 375 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 153/386 (39%), Gaps = 32/386 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++ +DL A+K+N + + L + AVVK N YG G I+ AG Sbjct: 1 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 Q V ++E ++LR + I VL P + + ++ + + L S + Sbjct: 61 QGLCVAILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKQTSTFL- 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176 G L +D+G R+G + +A ++ + + + +H + AD Sbjct: 120 SGTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFD 179 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227 Q+++F K +S+ L L R GI++YG +I Sbjct: 180 SQVKKFDHFKKMLRIKPKYIHCDNSAASLFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q + + ++ +++ A V YG K D I +GYADG+ ++ G Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K + PI+G++ MD M + + + + G +++ D + Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNI 345 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++ + R + Y Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371 >gi|16760692|ref|NP_456309.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141550|ref|NP_804892.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162931|ref|ZP_03348641.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420203|ref|ZP_03353269.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426623|ref|ZP_03359373.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648191|ref|ZP_03378244.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|20137367|sp|Q8Z688|ALR2_SALTI RecName: Full=Alanine racemase, catabolic gi|25291652|pir||AC0723 alanine racemase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502989|emb|CAD05485.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137177|gb|AAO68741.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 356 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|296126374|ref|YP_003633626.1| alanine racemase [Brachyspira murdochii DSM 12563] gi|296018190|gb|ADG71427.1| alanine racemase [Brachyspira murdochii DSM 12563] Length = 369 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 108/376 (28%), Positives = 183/376 (48%), Gaps = 23/376 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++DL+ LKNN +++++ + +VK NAYG G +I+ A G V + Sbjct: 3 NYTIAEVDLSILKNNIEIIHSIANGVKLLNIVKANAYGHGLVEISQASEQFGADALGVAT 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123 VEEG+K+R + I VL+ + +++ +LIP+IS+ L +Y + G S Sbjct: 63 VEEGIKIRESGVKLPIIVLFQHFKQEAELVCRYDLIPIISNDECLEYYDRYLKKYGGSLK 122 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA---DDPSSHVNSVQLE 180 ++VDTG NR+G ++ LD + + I +H A A DD S Q++ Sbjct: 123 LYIKVDTGLNRMGARAEDVLDLAKKVLSYSTLSIEGINTHYAAADMQDDYSREFTQRQID 182 Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 F +I+ K + +S+ +L N +F + R GI LYG T ++ + Sbjct: 183 IFNNVITTLKSNGIVINNVHTANSAALLSYKNTYFDMVRAGIILYGYTYDEAYDLGIKPI 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + +++++LIRK GE +SYG + RD+ IAV IGYADG LS Sbjct: 243 LNLKSKVVLIRKIKKGESISYGMTWRADRDTNIAVVPIGYADGVSRKLSN---------- 292 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLDDVALASGTT 353 + I G P+ G++ MD + +I + I+ D + IFG D + + +A + Sbjct: 293 -NWEVKINGKYYPLRGRVCMDSIIIEIGND-DIKTEDDVLIFGNDKRLNANTLAKRIDSI 350 Query: 354 NYDLLVRIGTRYAKFY 369 ++++LV IG R + Y Sbjct: 351 SHEVLVNIGDRVTRVY 366 >gi|213026678|ref|ZP_03341125.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 356 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y LL Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 AVAPRVP 352 >gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5] Length = 792 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 159/371 (42%), Gaps = 22/371 (5%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++DL A+ +N + LS R A+VK +YG G ++A L + GV V +E Sbjct: 431 LEVDLDAMIHNLNYFRSKLSFGTRLVAMVKAGSYGAGDFEVAQMLQHQGVDYLAVAFADE 490 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126 GV LR I VL + +I + + S F + G S P + Sbjct: 491 GVLLRERGISMPIVVLNADADSFDVMIANRLEPEIYSFHSLGAFADAVTHAGESRYPIHV 550 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185 ++DTG +RLG QE + + + SHL CAD P Q+ + + Sbjct: 551 KLDTGMHRLGFVEQEIAQLCATLAATPQVKAASVFSHLNCADMPEEDAYTRAQIALYDRM 610 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + A+S+ I P F + R G+ LYG + N + + T + Sbjct: 611 SAQLAASLPYPVIRHTANSAAIERFPEAQFDMCRLGLGLYGFGFRHNDALRPVS--TLKT 668 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI+ I++ AG+ V YG KLTR + A IGYADG L Sbjct: 669 RIVQIKRLPAGDAVGYGRAGKLTRPTTTATIPIGYADGLDRHLGCGRWS----------V 718 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG--PDIKLDDVALASGTTNYDLL 358 + G PI+G++ MD M DITD ++ GD + +F P L+ +A T +Y+++ Sbjct: 719 LVAGQPAPIIGRVCMDSCMIDITDIPGVKEGDEVSVFSPVPGNDLETMARVLDTISYEIM 778 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 779 TSVSGRVKRIY 789 >gi|297571884|ref|YP_003697658.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595] gi|296932231|gb|ADH93039.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595] Length = 374 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 154/386 (39%), Gaps = 33/386 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S R I A N + + +A A+VK N YG G E IA + AG+ Sbjct: 1 MTSQAPARALISRRAFTQNIEVVRKHT-DATLMAIVKANGYGHGVELIAQWAWEAGIDWL 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 + + E + LR + + + N+ + + + Sbjct: 60 GLAQLNEALTLRQSHTHGHVLAWIFAPGADFQRAIEQNIDLSVGATWAIDEIEAAARACR 119 Query: 121 SHPY-ALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADD-PSSHVN 175 ++VDTG R G L + + + Q+ + SHLACADD S Sbjct: 120 RPARIHVKVDTGMTRGGFDLDQLPSVFARVKKLAAEGIIQIVGLWSHLACADDPHSDAAT 179 Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---- 226 ++Q++RF S K E LA+SSGIL P H+ + RPGI LYG + Sbjct: 180 ALQVDRFEQARSLAKEAEVEIPFCHLAASSGILWHPETHYDMVRPGIVLYGLSPNPAYAT 239 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++T EA +IL R+ G +SYG + +AV +GYADG S Sbjct: 240 GPELGLEPLMTLEANVILTREVPEGVGISYGHTHITDEPTRLAVVPVGYADGISRRASNA 299 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 S + G PI G + MD + ++ GD +FGP+ + Sbjct: 300 LS-----------VTLNGDQAPICGVVCMDQFVV---NAPHAHAGDTAVLFGPEHKGYLT 345 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKF 368 D+ A + T NY++ +G R + Sbjct: 346 ADNWAEKTDTINYEIFCNLGPRIPRI 371 >gi|323127979|gb|ADX25276.1| alanine racemase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 366 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 27/381 (7%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + +++L A+K N S+ +T AVVK +AYG G +++ AL V Sbjct: 1 MISSFHRPTVARVNLQAIKENVASVQENIPLGVKTYAVVKADAYGHGAVQVSKALLPQ-V 59 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + V++++E ++LR I +L + P + ++ + ++S+ L + Sbjct: 60 DGYCVSNLDEALQLRQAGIDKEILILGVLLPNELELAITRQVTVTVASLEWLAMAKQEWP 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+G R+GL +D ++ I +H A AD+ + Sbjct: 120 DLKGLKVHIKIDSGMGRIGLRSVTEVDNLIAGLKSMGAEVEGIFTHFATADEADTVKFEQ 179 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 QL F L+ + + +S+ L F R GI +YG ++ P+ Sbjct: 180 QLTFFTNLVDQLADKPSLVHASNSATSLWHSETIFNAVRLGIVMYGLNPSGSELALPFPL 239 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + E+ ++ +++ GE V YG K + IGYADG+ + G Sbjct: 240 KEAFNLESVLVHVKEIAPGETVGYGATYKAQTSEYVGTVPIGYADGWTRDMQGFT----- 294 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 ++ I+G+++MD + + + G + + G D I D+A Sbjct: 295 -------VLVERQPCEIIGRVSMDQMTIRLPRAYPL--GTKVTLIGQDQEKVISTTDIAN 345 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 346 YRNTINYEVLCLLSDRVPRVY 366 >gi|226952236|ref|ZP_03822700.1| alanine racemase [Acinetobacter sp. ATCC 27244] gi|226837074|gb|EEH69457.1| alanine racemase [Acinetobacter sp. ATCC 27244] Length = 375 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 147/375 (39%), Gaps = 28/375 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+ N + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHTQALRQNLELLRTTVPNSKVFAVVKANAYGHGIERVYDAFKT--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE +LR I +L GI P L + S QL + + + Sbjct: 61 IEEAKRLRALGWTGPILLLEGIFSPQDLFDCAQYQLSFTVHSEHQLEWLQQHIYPAQ-FD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNSVQLER 181 L++++G NRLG Q+ + + H + AD QL Sbjct: 120 IFLKMNSGMNRLGFKPQQYRQVWRHLQRLNNVAKITHMMHFSDADGQRFGQAGVDYQLAE 179 Query: 182 FRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPMQT----VV 236 F T I G E S+++S+ IL P H R GI LYG + + + Sbjct: 180 FETHIQDLPG-ERSVSNSAAILRYPTQLHSDYVRGGIMLYGSSPDYPQHSIQDWGLAPTM 238 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + +I I++ E V YG + + A GYADGY Sbjct: 239 SLRSELIAIQQLKTNESVGYGSSFVAEHAMSVGIVACGYADGYQRI-----------SPT 287 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351 G + G +G+++MDM D+T + E+G + ++G + +DDVA ASG Sbjct: 288 GTPILVNGIRTRTIGRVSMDMLAVDLTPVPNAEIGSEVVLWGTSKTGSILPIDDVAAASG 347 Query: 352 TTNYDLLVRIGTRYA 366 T Y+L+ + R Sbjct: 348 TVGYELMCGVTARVK 362 >gi|126740432|ref|ZP_01756120.1| alanine racemase [Roseobacter sp. SK209-2-6] gi|126718568|gb|EBA15282.1| alanine racemase [Roseobacter sp. SK209-2-6] Length = 345 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 188/364 (51%), Gaps = 25/364 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +L I+L AL NW ++NA++ N TAAVVK N YGL ++A AL AG ++FFV + E Sbjct: 4 AKLTINLDALVANWRNLNAMT-NCETAAVVKANGYGLDAGRVAKALAQAGARNFFVAAAE 62 Query: 67 EGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR V G G +++ D L P+++S+ Q+ + + + H + Sbjct: 63 EGVALRRALGAGPGISVFSGHMDGDTRLLKDFQLTPMLNSLEQMLRHFESL---PGHAFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + L++SHLACAD+P+ +N+ QL+ FR + Sbjct: 120 VQLDSGMNRLGMEPAEWAAVGEIAL---GQSPVLLMSHLACADEPAHEMNAKQLKTFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 S + SLA++ GILLGP YHF L RPGI LYGG ++ V + + +I + Sbjct: 177 TSG-IEVPRSLAATGGILLGPEYHFDLCRPGIGLYGGRPYLDA----LPVASLDLPVIQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AGE V YG R S IA A GYADG L + Sbjct: 232 RDLEAGESVGYGNAWIAKRPSRIATVAAGYADGLQRALMNTGIDTFAGE----------T 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PI+G+++MD+ D+T + ++ + +D +A A+GT Y+ L +G RY Sbjct: 282 PCPIVGRVSMDLITVDVTALSDVP--SHLSLLNERQGVDILADAAGTIGYEFLTSLGHRY 339 Query: 366 AKFY 369 A+ Y Sbjct: 340 ARTY 343 >gi|294648818|ref|ZP_06726275.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194] gi|292825310|gb|EFF84056.1| alanine racemase [Acinetobacter haemolyticus ATCC 19194] Length = 375 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 147/375 (39%), Gaps = 28/375 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+ N + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAIIHTQALRQNLELLRTTVPNSKVFAVVKANAYGHGIERVYDAFKT--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE +LR I +L GI P L + S QL + + + Sbjct: 61 IEEAKRLRALGWTGPILLLEGIFSPQDLFDCAQYQLSFTVHSEHQLEWLQQHIYPAQ-FD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNSVQLER 181 L++++G NRLG Q+ + + H + AD QL Sbjct: 120 IFLKMNSGMNRLGFKPQQYRQVWRHLQRLNNVAKITHMMHFSDADGQRFGQAGVDYQLAE 179 Query: 182 FRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPMQT----VV 236 F T I G E S+++S+ IL P H R GI LYG + + + Sbjct: 180 FETHIQDLPG-ERSVSNSAAILRYPTQLHSDYVRGGIMLYGSSPDYPQHSIQDWGLAPTM 238 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + +I I++ E V YG + + A GYADGY Sbjct: 239 SLRSELIAIQQLKTNESVGYGSSFVAEHAMSVGIVACGYADGYQRI-----------SPT 287 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351 G + G +G+++MDM D+T + E+G + ++G + +DDVA ASG Sbjct: 288 GTPILVNGIRTRTIGRVSMDMLAVDLTPVPNAEIGSEVVLWGTSKTGSILPIDDVAAASG 347 Query: 352 TTNYDLLVRIGTRYA 366 T Y+L+ + R Sbjct: 348 TVGYELMCGVTARVK 362 >gi|116075736|ref|ZP_01472995.1| alanine racemase [Synechococcus sp. RS9916] gi|116067051|gb|EAU72806.1| alanine racemase [Synechococcus sp. RS9916] Length = 410 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 106/380 (27%), Positives = 164/380 (43%), Gaps = 26/380 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + L++ A+++N ++ L AVVK + YG G +A A G V Sbjct: 40 RQRAWLEVSPAAIESNARALRRLLKPTCALMAVVKADGYGHGATTVARAAVQGGAAQLGV 99 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EG+ LR + I VL P + L+P +SS+ + L G Sbjct: 100 ATLQEGIDLRRAGLEQPILVLGNLTQPDDLRACLQWQLMPTLSSMREALLCQNLADGSGR 159 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNS 176 L++DTG NRLG + ++A T L I SHLA AD V Sbjct: 160 QFAVQLKLDTGMNRLGCAWEDAPRLTEAIQQLNQLHLCGIYSHLALADGDPEGDGDRVTR 219 Query: 177 VQLERFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPM 232 +Q RF ++ H LA+S+G L P H L R G++LYG + + P+ Sbjct: 220 LQQTRFNEVLHHLPEHQALHHLANSAGTLRDPGLHHDLVRVGLALYGHSPSPHLDAAVPL 279 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q + +AR+ LIR+ G VSYG + R S +AV IGYADG LSG + Sbjct: 280 QPAMGVKARVTLIREVGTGVGVSYGHRFVTQRPSRLAVVGIGYADGVSRCLSGKIT---- 335 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 +G+ + +G ITMD + D TD ++ GD + + G +I + Sbjct: 336 -------ALHRGHSLLQVGAITMDQLILDATDHPDLDSGDVVTLLGRDGDQEISPRSWSE 388 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 S + +++L R + Sbjct: 389 LSESIPWEVLCGFKHRLPRV 408 >gi|313765106|gb|EFS36470.1| alanine racemase [Propionibacterium acnes HL013PA1] Length = 375 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + + L +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTPLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|309809615|ref|ZP_07703472.1| alanine racemase [Lactobacillus iners SPIN 2503V10-D] gi|312871527|ref|ZP_07731620.1| alanine racemase [Lactobacillus iners LEAF 3008A-a] gi|308170096|gb|EFO72132.1| alanine racemase [Lactobacillus iners SPIN 2503V10-D] gi|311092922|gb|EFQ51273.1| alanine racemase [Lactobacillus iners LEAF 3008A-a] Length = 375 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 153/386 (39%), Gaps = 32/386 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++ +DL A+K+N + + L + AVVK N YG G I+ AG Sbjct: 1 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 Q V ++E ++LR + I VL P + + ++ + + L S + Sbjct: 61 QGLCVAILDEAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFL- 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176 G L +D+G R+G + +A ++ + + +H + AD Sbjct: 120 SGTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLAHPEYDVEGMFTHFSTADCHDLEYFD 179 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227 Q+++F K +S+ + + L R GI++YG +I Sbjct: 180 SQVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVNSDLVRYGIAMYGLNPSSAPHGIEIQ 239 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q + + ++ +++ A V YG K D I +GYADG+ ++ G Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K + PI+G++ MD M + + + + G +++ D + Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNI 345 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++ + R + Y Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371 >gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis DSM 17361] gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis DSM 17361] Length = 825 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + + L + ++K +AYG G +IA +L + V V +E Sbjct: 466 LEVNLNAVVDNLNYYRSFLKPETKLVCMIKADAYGAGSVEIAKSLQDHQVDYLAVAVADE 525 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 G LR + I ++ K +FD +L P + S L K + P Sbjct: 526 GAMLRGNGITSSIMIMNPELSA-FKTMFDNDLEPEVYSFRLLDALVKAAEKEGITNFPVH 584 Query: 126 LQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFR 183 +++DTG +RLG + + ++ + SH AD D +++Q ERF Sbjct: 585 IKLDTGMHRLGFDPEKDLDKLIEKLQHQNAVIPRSVFSHFVGADSDDFDSFSALQFERFD 644 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +S+GI P + + R G+ LYG + N+ + T Sbjct: 645 RASKRLQQAFEHKILRHMDNSAGIEHFPGWQMDMCRLGLGLYGVNSRNNEIINNVS--TL 702 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++ I+ +R+ A E V Y + KL RDS+IA IGYADG L G Sbjct: 703 KSTILQLRRVPADETVGYSRKGKLMRDSVIAAIPIGYADGLNRHLGNRR----------G 752 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ + D+T + GD ++IFG + + ++ T Y++L Sbjct: 753 YCLVNGCKAEYVGNICMDVALVDVTGI-DCKEGDTVEIFGDHLPVTVLSKILDTIPYEVL 811 Query: 359 VRIGTRYAKFY 369 + +R + Y Sbjct: 812 TSVSSRVKRIY 822 >gi|153853243|ref|ZP_01994652.1| hypothetical protein DORLON_00637 [Dorea longicatena DSM 13814] gi|149754029|gb|EDM63960.1| hypothetical protein DORLON_00637 [Dorea longicatena DSM 13814] Length = 366 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 26/361 (7%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + + + AV+K + YG G +IA L + + V +++E + L+ + + V Sbjct: 4 KNIQKDTQMMAVIKMDGYGHGAVQIAKLLEPKDYIWGYAVATLDEAILLKDACLKKPVLV 63 Query: 83 LYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL-Q 140 L I P Q + + + S + G +++DTG RLG + + Sbjct: 64 LGCIFPDQWDTMIRNEVRMTVYSYEMAKEVSELAEAMGCKVYVHIKLDTGMARLGFQITE 123 Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI-----EAS 195 E + + + +H + +D+ + QL+++ + K Sbjct: 124 ENAEEIAKISKLPNLVMEGMFTHFSKSDEADKTFTNEQLDKYLWMKEELKKRGVTFQYYH 183 Query: 196 LASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGE 252 ++S+GI+ + + R GI+ YG P++ + + + ++ G+ Sbjct: 184 CSNSAGIIDLKEANMDIVRAGITTYGMYPSDEVEKERVPLKPAMELISHVAHVKWLTEGK 243 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 VSYGG TR + +A +GY DGYP +LS G I G PI+G+ Sbjct: 244 PVSYGGTYVTTRPTKVATIPVGYGDGYPRSLSN-----------KGYVLIHGQKAPIIGR 292 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368 + MD M D+T +E GD + IFG D + +D + SG NY+ + + R + Sbjct: 293 VCMDQFMVDVTAIEDVEFGDKVVIFGRDGKEFLSVDTLGELSGRFNYEFVCVLNKRIPRE 352 Query: 369 Y 369 Y Sbjct: 353 Y 353 >gi|50955527|ref|YP_062815.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952009|gb|AAT89710.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 372 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 152/379 (40%), Gaps = 25/379 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S F L +DL A+ N + +G AVVK +AYG G + A A G V Sbjct: 2 SAPFRELVVDLDAVSANVVRLRERAGTPHLMAVVKADAYGHGAVESACAALAGGADWLGV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + E +LR +A + + +SS+ + G Sbjct: 62 ADLSEASQLRAAGIEAPLLAWLHDPDEDFVAAIAAGVDIGVSSL-AHLEAAAAAGGGSPA 120 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNK-----KLGQLSLIISHLACADDPSSHVNSV 177 L+++TG +R GL ++ + + + A + + + + Sbjct: 121 FVQLKLETGLSRNGLPEEQWEAVFARAHELERSGRIVVRGVFSHLSNASPAEDRAAIAAY 180 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQT 234 + R + +A+S+ + P F L R G+++YG + S ++ Sbjct: 181 ERGLARAEAAGLAPELRHIAASAAAISLPEARFTLVRLGLAIYGLSPFGAASATELGLRP 240 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T AR+ +R+ AG+ VSY + R++ +A+ +GY DG P S L Sbjct: 241 ALTLRARVAAVRRVPAGKGVSYDYTYRTERETTLALVPVGYGDGLPRHASNL-------- 292 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G I G + G+I MD + D+ D+ + VGD + +FG DD A A+ Sbjct: 293 ---GPVSIGGERFRVSGRIAMDQFVVDVGDAP-VAVGDEVVLFGDPARGVPGADDWAAAA 348 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T NY+++ R+G R + + Sbjct: 349 ETINYEIVTRLGGRLRRTF 367 >gi|227818945|ref|YP_002822916.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234] gi|227337944|gb|ACP22163.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234] Length = 377 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 134/365 (36%), Positives = 197/365 (53%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL+ N+ ++A A AAVVK +AYGLG E+++ AL+ G + FFV + E Sbjct: 23 LTIDLAALQRNYRKLSAAVAPASAAAVVKADAYGLGAEQVSKALHAQGCRHFFVAHLPEA 82 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 +KLR P IFVL G+ PG E + +++PV++S+ Q +S G P L Sbjct: 83 LKLRPLLPNDTHIFVLNGLQPGAEITCTNADVVPVLNSLEQFRRWSFTAEKLGRVFPAVL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLG+ QE ++ I+SH+ACAD+ N+ QL R + Sbjct: 143 QFDTGMSRLGVPPQERTALAAELKGCGNLEILFIMSHVACADEADKKQNADQLAEMRVIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + G++ A+S G+ LG +YH L RPGI+LYGG + +PM+ VV E +I R Sbjct: 203 AEFAGLDVCFANSGGVFLGGDYHGVLARPGIALYGGAPTAGRYNPMEPVVRLEVAVIQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG + + +A A GYADG P +LS G F G Sbjct: 263 TVPAGTRVGYGGAHVTSAKTRLATIAAGYADGLPRSLSDC-----------GAVFYDGVR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD DIT + +G +++ GP L+DVA A+GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSITVDITALPEGTLSLGSLVEVLGPHQTLEDVAEAAGTISYEILTSLGRR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YERRY 376 >gi|88807916|ref|ZP_01123427.1| alanine racemase [Synechococcus sp. WH 7805] gi|88787955|gb|EAR19111.1| alanine racemase [Synechococcus sp. WH 7805] Length = 393 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 109/379 (28%), Positives = 171/379 (45%), Gaps = 26/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++ A++ N ++ L AVVK + YG G E +A A G V Sbjct: 23 RQRAWMEVSAQAVEKNARALKGILKPGCALMAVVKADGYGHGAETVARAAICGGAASLGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EG++LR + + VL I + L+P +SS+ + L S G Sbjct: 83 ATLQEGIELRRAGLELPVLVLGNLIQAEDLRACLHWQLMPTLSSMREALLCQNLASGSGR 142 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNS 176 L++DTG RLG Q+ T L + SHLA AD + Sbjct: 143 RFSVQLKLDTGMTRLGCDWQDGSRLTAAIQQLDHLMLRGVYSHLAMADGGPEGDAERITR 202 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPM 232 +Q ERF + + ++ LA+S+G L P+ H R G++LYG + +N+S + Sbjct: 203 LQQERFDAVTRSLRSEALQLHLANSAGTLRDPSLHHDQVRVGLALYGHSPSQHLNQSVHL 262 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + +AR+ LIR AG VSYG + +R S +AV IGYADG +LSG S Sbjct: 263 EPAMGVKARVSLIRVVPAGVGVSYGHRFITSRPSRLAVVGIGYADGVSRSLSGQIS---- 318 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G +P +G ITMD + D TD +++VGD + + G D I + A Sbjct: 319 -------VLHAGQRLPQVGAITMDQLLVDATDHPALDVGDVVTLLGSDGEEVIHPLEWAE 371 Query: 349 ASGTTNYDLLVRIGTRYAK 367 S T +++L R + Sbjct: 372 LSHTIPWEVLCSFKHRLPR 390 >gi|242241483|ref|ZP_04795928.1| alanine racemase [Staphylococcus epidermidis W23144] gi|242235026|gb|EES37337.1| alanine racemase [Staphylococcus epidermidis W23144] Length = 384 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 158/382 (41%), Gaps = 30/382 (7%) Query: 3 SNEFLRLK---IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S +F R ++L A+ N+ + N L N +V+K N YGLG KIA L G Sbjct: 4 SEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGATF 63 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ--LTFYSKLMS 117 F V +++E ++LR++ A++ VL + + + + S T Sbjct: 64 FAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPDD 123 Query: 118 CGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG R+G+ + E + + + +H A AD+P S +N Sbjct: 124 NQKNLWLHVKLDTGMGRIGMKDIYEYKEVVDLINKRNHLVFEGVYTHFASADEPGSSMN- 182 Query: 177 VQLERFRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHP 231 Q F+ +++ K I +S+G LL R GISLYG N Sbjct: 183 EQYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH 242 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + + ++ AGE VSYG + IA+ IGYADGY ++ Sbjct: 243 LRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQ------- 295 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G + G ++G+I MD + + ++ G+ + + + VA Sbjct: 296 -----GAFVNVNGNQCEVIGRICMDQMIVKVP--SHVKTGEKVILMDNHVDSPQSAEAVA 348 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 GT NY++L + R + Y Sbjct: 349 NKQGTINYEVLCNLSRRLPRIY 370 >gi|169824891|ref|YP_001692502.1| alanine racemase [Finegoldia magna ATCC 29328] gi|167831696|dbj|BAG08612.1| alanine racemase [Finegoldia magna ATCC 29328] Length = 391 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LK+DL LK+N+ + +S + AVVK NAYG G I L G+ F V+++ E Sbjct: 8 LKVDLDKLKHNYKEIKNISNLVKMCAVVKANAYGQGAAFITKELEYLGIDYFAVSNINEA 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127 ++LR I +L I ++ N+ + + + ++ Sbjct: 68 LELRKNGIFKPIMILGYISNENIEVAIKNNIELTVYDYDTAVEINNVAKSLNKICKVHIK 127 Query: 128 VDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +DTG RLG + + L+ + L I SH + AD Q + Sbjct: 128 IDTGMTRLGFQVRLDRDKCLEEIFKIYKMDNVVLQGIYSHFSDADSEDYSYTKEQYNTYI 187 Query: 184 TLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTV 235 + + + ++ + Y + R GI LYG N ++ + Sbjct: 188 GFMIDVENRGITVPIKHIANDAGAIIHGYFLDMIRCGIGLYGYHASDYVRENSRLNLEEI 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + +I+ G + YG ++++A A IGYADGYPL LS Sbjct: 248 SSLYTTVSMIKTVPKGTDIGYGRTFTTNSETVVATATIGYADGYPLELSN---------- 297 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 I G ILGK+ MD M D+T ++VGD + +FG D I L +A + Sbjct: 298 -KAYVIINGKKAKILGKVCMDQIMIDVTYIRDVKVGDKVLLFGKDDMGEISLYKLAEMAN 356 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+LL R+ R + Y Sbjct: 357 TNVYELLCRVTMRIPRIY 374 >gi|315653948|ref|ZP_07906864.1| alanine racemase [Lactobacillus iners ATCC 55195] gi|315488644|gb|EFU78290.1| alanine racemase [Lactobacillus iners ATCC 55195] Length = 375 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 152/386 (39%), Gaps = 32/386 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++ +DL A+K+N + + L + AVVK N YG G I+ AG Sbjct: 1 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 Q V ++E ++LR + I VL P + + ++ + + L S + Sbjct: 61 QGLCVAILDEAIELRKAGIKVPILVLGITLPKFALLAAENDISLTVGDLDWLKQASTFL- 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176 G L +D+G R+G + +A ++ + + +H + AD Sbjct: 120 SGTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLAHPEYDVEGMFTHFSTADCHDLEYFD 179 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227 Q+++F K +S+ + L R GI++YG +I Sbjct: 180 SQVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q + + ++ +++ A V YG K D I +GYADG+ ++ G Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K + PI+G++ MD M + + + + G +++ D + Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNI 345 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++ + R + Y Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371 >gi|317495370|ref|ZP_07953739.1| alanine racemase [Gemella moribillum M424] gi|316914429|gb|EFV35906.1| alanine racemase [Gemella moribillum M424] Length = 375 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 173/382 (45%), Gaps = 27/382 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ L+++L A+ NN+ ++ L+G + AVVK ++YGLG + IA LY GV+ F Sbjct: 1 MINDRPTHLRVNLDAVLNNYRKLDKLNGLKTSLAVVKADSYGLGAKVIADYLYKNGVRHF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCG 119 V ++EE ++L+ Y ++ + VL +P K + N+ + S +L Sbjct: 61 AVATLEEALELKKYIKESLLLVLGVTNPKNVKYAVENNISLTCPSKEWFEEALKELEKID 120 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++++TG NR+G S E L HN F + + I SH + AD + + Q Sbjct: 121 GKLKLHIKLETGMNRIGTSEVEELMEIHNLFYSEKVEFEGIFSHYSNADGEDNEYDDYQT 180 Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTDKIN----KSHP 231 F +L+ K + +S+G + + L+R GI+LYG N Sbjct: 181 ANFNSLVKLFKLKPKYIHIENSAGTIKYSDRNDICNLSRIGIALYGCYPSSNIERLNKLS 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V + +++ ++K G + YG + D IA IGYADG G Sbjct: 241 LEPVASLVSKVTHVKKVPKGTKIGYGISYETQEDEYIATIPIGYADGLLRRAQGFKLN-- 298 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 + G I+G++ MD M ++ +I+VGD + +FG I +DD A Sbjct: 299 ----------VAGEECEIVGRVCMDQLMVRCSE--NIKVGDDVLVFGEYNNQKISVDDFA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ I R + Y Sbjct: 347 DYQKTISYEIFCCINRRVPRKY 368 >gi|313833423|gb|EFS71137.1| alanine racemase [Propionibacterium acnes HL056PA1] Length = 375 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAESTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|116513509|ref|YP_812415.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275721|sp|Q04C45|ALR_LACDB RecName: Full=Alanine racemase gi|116092824|gb|ABJ57977.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 376 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 32/387 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + N L I+L A+K N A L + VVK NAYG G ++AP + AG Sbjct: 1 MITAVNRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG++LR I VL + + ++ +SS+ L K++ Sbjct: 61 DGFCVAMLDEGLELRRAQIVKPILVLGLQPAEESALAAANDISLPVSSLDWLKKAEKVLR 120 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVN 175 G+ L +D+G R+G S E + + + +H A AD + Sbjct: 121 KEGLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------I 226 Q++RF+ + S + +++ IL + + R GI LYG + Sbjct: 181 DYQVKRFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDL 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ ++ + + +++ G V YG D I +GYADG+ G Sbjct: 241 EPAFALEPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 K + PI+G++ MD M + + G +++ D Sbjct: 301 ------------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 L A T +Y++ + R + Y Sbjct: 347 LRRAADWLDTIHYEVACQFNDRLDRIY 373 >gi|124024027|ref|YP_001018334.1| alanine racemase [Prochlorococcus marinus str. MIT 9303] gi|123964313|gb|ABM79069.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9303] Length = 398 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 174/381 (45%), Gaps = 28/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++++ A++ N S+ L + AVVK + YG G +A A G + V Sbjct: 26 RQRAWVEVNPAAVEANCRSLRRHLCESCALMAVVKADGYGHGAVTVARAALQGGAKSLGV 85 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EG++LR A + VL H K L+P +SS+ ++ L G Sbjct: 86 ATLQEGIELRQAGHNAPVLVLGNLTHSEDLKACLHWQLMPTLSSMREVLLCQNLADGSGR 145 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP----SSHVNS 176 L++DTG RLG L+EA + +L I SHLA AD ++ V Sbjct: 146 QFRIQLKIDTGMTRLGCELKEAPRLVEAIDHLNQLELKGIYSHLALADGDLQGEAAMVTD 205 Query: 177 VQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SH 230 Q + F ++ + G LA+S+G L H+ + R G++LYG + + Sbjct: 206 QQQQHFEAVLRTLPEQHNGFMRHLANSAGTLRDRGLHYDMVRVGLALYGHSPNLQLQGKV 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 +Q ++ +AR+ LIR AG VSYG + R S +AV IGYADG +LSG S Sbjct: 266 DLQPALSVKARVTLIRDVPAGVGVSYGHRFTTRRPSRLAVVGIGYADGVSRSLSGQISAI 325 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + +G ++P +G ITMD + D T+ +EVG + + G D I Sbjct: 326 A-----------EGQLLPQVGAITMDQLVLDATNHPDLEVGSIVTLLGQDGDACITPQQW 374 Query: 347 ALASGTTNYDLLVRIGTRYAK 367 + SG+ +++L R + Sbjct: 375 SDLSGSIPWEVLCSFKHRLPR 395 >gi|254465901|ref|ZP_05079312.1| alanine racemase [Rhodobacterales bacterium Y4I] gi|206686809|gb|EDZ47291.1| alanine racemase [Rhodobacterales bacterium Y4I] Length = 345 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 186/364 (51%), Gaps = 25/364 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL I+L AL NW +++AL+ N TAAVVK N YGL ++ AL AG ++FFV + E Sbjct: 4 ARLTINLDALVTNWRNLDALT-NCETAAVVKANGYGLDAGRVGKALARAGARNFFVAAAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG LR P I V G G K++ D L P+++S+ Q+ + + + HP+ Sbjct: 63 EGGALRRALGPGPGISVFSGHMEGDAKLLKDFQLTPMLNSLDQMLRHFETL---PGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + L++SHLACAD+P +N+ QL FR L Sbjct: 120 VQLDSGMNRLGMEPGEWAAVAEIAL---GQNPVLLMSHLACADEPGHGMNARQLHTFREL 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 I SLA++ G+LLG +YHF L RPGI LYGG + VV + +I + Sbjct: 177 TDG-LDIPRSLAATGGMLLGSDYHFDLCRPGIGLYGGLPFKDA----LPVVQLDLPVIQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE YG R S IA A GYADG + G + + Sbjct: 232 RDMEPGESAGYGNAWVAKRPSRIATVAAGYADGLHRAMG----------QGGIQVYAGDT 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++MD+ D+TD EV D + I +D +A A+GT Y++L G R Sbjct: 282 PCPVVGRVSMDLITVDVTDL--AEVPDMLAILNERQTVDMLADAAGTIGYEILTSSGHRS 339 Query: 366 AKFY 369 A+ Y Sbjct: 340 ARTY 343 >gi|86134588|ref|ZP_01053170.1| Alanine racemase [Polaribacter sp. MED152] gi|85821451|gb|EAQ42598.1| Alanine racemase [Polaribacter sp. MED152] Length = 366 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 149/376 (39%), Gaps = 23/376 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+++ + L+ID AL +N + L+ N + AVVK YG +A L + V Sbjct: 1 MNNHVSV-LEIDSKALVHNLNYFKNKLNQNTKILAVVKAFGYGSDGVLVADFLKDK-VDY 58 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V EG+ LR + I VL+ + I D L P + + + +L Sbjct: 59 FAVAYAHEGIALREANIKTPILVLHP-QIATLQDIIDYRLEPNLYNFKIFHAFLELADTI 117 Query: 120 V--SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 ++P ++ +TG NRLG + ++ + SHLA ++D + Sbjct: 118 PLMNYPVHIKFNTGLNRLGFWHTDIPKIISELKETNHIKVQSLFSHLAASEDLEEKDFTN 177 Query: 177 VQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 QL F ++ + + ++SG++ F + R GI LYG + ++ Sbjct: 178 NQLNSFAYIVQQFYKHLSYEPMLHILNTSGVVNYAKAQFDMVRVGIGLYGFGNDDEETKQ 237 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ I I GE V Y + S A +G+ADG L Sbjct: 238 LKNTHNLKSIISQIHLIEPGETVGYNRAFVAKKPSKSATIPVGHADGLSRKLGNEA---- 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G I I+G + MDM M D+T GD + IF L +A AS Sbjct: 294 ------GYVLINNQKAKIIGNVCMDMIMVDVTKI-DCNEGDEVIIFNSQDMLKHIADASE 346 Query: 352 TTNYDLLVRIGTRYAK 367 T Y+ L I R K Sbjct: 347 TIVYETLTSISPRVKK 362 >gi|309803757|ref|ZP_07697843.1| alanine racemase [Lactobacillus iners LactinV 11V1-d] gi|309804662|ref|ZP_07698727.1| alanine racemase [Lactobacillus iners LactinV 09V1-c] gi|312872507|ref|ZP_07732575.1| alanine racemase [Lactobacillus iners LEAF 2062A-h1] gi|312874316|ref|ZP_07734348.1| alanine racemase [Lactobacillus iners LEAF 2052A-d] gi|325912385|ref|ZP_08174780.1| alanine racemase [Lactobacillus iners UPII 143-D] gi|329920529|ref|ZP_08277261.1| alanine racemase [Lactobacillus iners SPIN 1401G] gi|308164166|gb|EFO66427.1| alanine racemase [Lactobacillus iners LactinV 11V1-d] gi|308166054|gb|EFO68272.1| alanine racemase [Lactobacillus iners LactinV 09V1-c] gi|311090189|gb|EFQ48601.1| alanine racemase [Lactobacillus iners LEAF 2052A-d] gi|311091869|gb|EFQ50245.1| alanine racemase [Lactobacillus iners LEAF 2062A-h1] gi|325475727|gb|EGC78898.1| alanine racemase [Lactobacillus iners UPII 143-D] gi|328936205|gb|EGG32658.1| alanine racemase [Lactobacillus iners SPIN 1401G] Length = 375 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 153/386 (39%), Gaps = 32/386 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++ +DL A+K+N + + L + AVVK N YG G I+ AG Sbjct: 1 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 Q V ++E ++LR + I VL P + + ++ + + L S + Sbjct: 61 QGLCVAILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKTSTFL- 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176 G L +D+G R+G + +A ++ + + + +H + AD Sbjct: 120 SGTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFD 179 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227 Q+++F K +S+ + L R GI++YG +I Sbjct: 180 SQVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q + + ++ +++ A V YG K D I +GYADG+ ++ G Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K + PI+G++ MD M + + + + G +++ D + Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNI 345 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++ + R + Y Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371 >gi|209518012|ref|ZP_03266843.1| alanine racemase [Burkholderia sp. H160] gi|209501516|gb|EEA01541.1| alanine racemase [Burkholderia sp. H160] Length = 356 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 145/348 (41%), Gaps = 22/348 (6%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 + ++ AVVK NAYG G + P L F + +EE VKLR I +L Sbjct: 22 RRHAPKSKIWAVVKANAYGHGLARAFPGLRA--TDGFGLLDLEEAVKLRELGWAGPILLL 79 Query: 84 YGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEA 142 G P +I +L + S QL L+++TG NRLG ++++ Sbjct: 80 EGFFRPTDIDVIDRYSLTTALHSDEQLRMLEM-ARLSKPVNIQLKMNTGMNRLGYTVEKF 138 Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGI 202 + + +++H + AD + Q+E F G SL++S+ Sbjct: 139 RAAWERARACQGVGQITLMTHFSDADGERGI--AHQMEAFERGAQGIAGAR-SLSNSAAT 195 Query: 203 LLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGG 258 L P HF RPGI LYG + + +Q +T + +I ++ G V YG Sbjct: 196 LWHPQAHFDWVRPGIMLYGASPSGVTAAIEGTGLQPAMTLTSELIAVQTLGEGSSVGYGS 255 Query: 259 QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMT 318 I V A GYADGYP G + G I+G+++MDM Sbjct: 256 TFTARGSMRIGVVACGYADGYPR-----------VAPEGTPVIVDGVRTRIVGRVSMDML 304 Query: 319 MFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 D+T + VG ++++G + +DDVA GT Y+L+ + R Sbjct: 305 TVDLTPVPTANVGSRVELWGTALPIDDVAQVCGTIGYELMCAVAPRVP 352 >gi|86749577|ref|YP_486073.1| alanine racemase [Rhodopseudomonas palustris HaA2] gi|86572605|gb|ABD07162.1| alanine racemase [Rhodopseudomonas palustris HaA2] Length = 423 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 181/364 (49%), Gaps = 10/364 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW + + A AAVVK +AYG G + AL AG + FFV ++ E Sbjct: 46 LTIDLDAIVANWRKLEKTAVPAEAAAVVKGDAYGCGIAPVTKALVAAGCKTFFVATLAEA 105 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQ 127 +R P A I+VL G N PVI + +L + S A+ Sbjct: 106 AAVRATAPDAAIYVLDGFFQSTGDEFARLNCRPVIGDLYELAEWDVYCRRTQWSGGAAIH 165 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL++ EA ++L+ISHLA A+ + +N+ Q+ FR + S Sbjct: 166 IDTGMNRLGLTISEAQGIVPRIAT-GDHGITLVISHLAAAEALNHPMNARQVTAFREIAS 224 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + G+ ASL++SSGI L P + F + RPG +LYG +PMQ VV +ARI+ +R Sbjct: 225 LFTGVPASLSASSGIFLDPQFAFDMVRPGAALYGINPTPEADNPMQPVVDLKARILQVRS 284 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G+ V YGG R + IAV + GYADGY D G I G Sbjct: 285 VERGDSVGYGGTWTARRPTKIAVLSAGYADGYFRAAGSNDGTR------GADVIIAGQRC 338 Query: 308 PILGKITMDMTMFDITDSL--SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P+ G+I+MD+ D+TD + G + G I +D++ G+ Y++L +G RY Sbjct: 339 PVAGRISMDLLAVDVTDLPANAARRGQMATLIGDGITVDELGHHFGSIGYEVLTSLGRRY 398 Query: 366 AKFY 369 A+ Y Sbjct: 399 ARVY 402 >gi|291294605|ref|YP_003506003.1| alanine racemase [Meiothermus ruber DSM 1279] gi|290469564|gb|ADD26983.1| alanine racemase [Meiothermus ruber DSM 1279] Length = 365 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 32/375 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+I+L AL +N++ + + +GN + VVK NAYG G ++ L G V + Sbjct: 2 RPAWLEINLDALAHNYNLLRSRAGNTQVIGVVKANAYGHGAVEVGKELLRLGAWGLAVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E +LR ARI ++ +HP Q + + + +LIP IS++ + + G Sbjct: 62 TDEARELRKAGIVARILLMGSLHPQQAREVVELDLIPSISTLESAEALN---ALGKPVTV 118 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ DTG R+G +EA + + + I SH A A++ Q+ F+ Sbjct: 119 HLEFDTGMGRVGFQPEEAPQVKEHLVRYENLLVQGIYSHFADAEEDVL-WTKEQIAHFKQ 177 Query: 185 LISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + + G L +++G Y RPGI LYG + + A+ Sbjct: 178 VQQVFGPGYFYHLCNTAGTFNFGEYGLSAVRPGIGLYGLLPHLGLK----PIARLLAKPT 233 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +++ G + Y G IA +GYADG P + + Sbjct: 234 QVKELPPGRRIGYSGLYTTQGREWIATLPVGYADGIPRLVFNRATVRYYPDDQP------ 287 Query: 304 GYMVPILGKITMDMTMFDITDSLSI-EVGDYIQ--------IFGPDIKLDDVALASGTTN 354 P++G+++MD + + + +V + + ++G A +GT + Sbjct: 288 -CTCPVVGRVSMDQITVKLPGPVGLEQVFEVVTPDFDPTSSLWG-------WAELTGTVS 339 Query: 355 YDLLVRIGTRYAKFY 369 Y+ VR+ R + Y Sbjct: 340 YEPAVRLAARLPRVY 354 >gi|260906034|ref|ZP_05914356.1| alanine racemase [Brevibacterium linens BL2] Length = 407 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 154/398 (38%), Gaps = 47/398 (11%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +R +ID+ AL+ N + AR VVK NAYG G + +APAL+ AG +DF V ++ Sbjct: 10 LVRAEIDVAALQANAAVLAKRLAPARLKCVVKANAYGHGIDIVAPALFAAGWRDFCVATI 69 Query: 66 EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 E + LR I + +S+V L + Sbjct: 70 NEALHLRELLGDDVTITAWLYGPTTDLDAAVAAGIELGVSTVDSLERLRDAARRTNTTAR 129 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---------------IISHLACAD 168 L+VDTG R GL+ + S I+SH A AD Sbjct: 130 LHLKVDTGLGRNGLAPADWKRALVKLKTLDARTESDGADASATTPELEIVGIMSHYAVAD 189 Query: 169 DPSSHVNSVQLERFRT--------------LISHYKGIEASLASSSGILLGPNYHFQLTR 214 +P + Q + F + + + +E +A+S L + R Sbjct: 190 EPERVETAQQTQVFDSAHRELSAVLDGAQGRLGESERLEVHIANSPAALTLSPFPGTSAR 249 Query: 215 PGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271 G+SLYG + + +K + + +++I ++ G SYG D+ A+ Sbjct: 250 VGLSLYGLSPLGDQTSKDLGLVPAMRLVSQVINLKDIPTGHGASYGLTFTAAADTRFALV 309 Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331 GY DG + S + I+G P++G+I MD + ++ + +G Sbjct: 310 PGGYGDGIARSASN-----------KAEVSIRGTRYPVVGRIAMDQMIVEVGAG-EVAIG 357 Query: 332 DYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRYAKF 368 D + IFGPD + + T NY+++ RI R + Sbjct: 358 DEVVIFGPDGPSAAEWGEWAETINYEIVTRISERVDRV 395 >gi|315099423|gb|EFT71399.1| alanine racemase [Propionibacterium acnes HL059PA2] Length = 375 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAESTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|309808567|ref|ZP_07702463.1| alanine racemase [Lactobacillus iners LactinV 01V1-a] gi|312874851|ref|ZP_07734870.1| alanine racemase [Lactobacillus iners LEAF 2053A-b] gi|325913186|ref|ZP_08175556.1| alanine racemase [Lactobacillus iners UPII 60-B] gi|308168195|gb|EFO70317.1| alanine racemase [Lactobacillus iners LactinV 01V1-a] gi|311089596|gb|EFQ48021.1| alanine racemase [Lactobacillus iners LEAF 2053A-b] gi|325477607|gb|EGC80749.1| alanine racemase [Lactobacillus iners UPII 60-B] Length = 375 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 153/386 (39%), Gaps = 32/386 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++ +DL A+K+N + + L + AVVK N YG G I+ AG Sbjct: 1 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 Q V ++E ++LR + I VL P + + ++ + + L S + Sbjct: 61 QGLCVAILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKQTSTFL- 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNS 176 G L +D+G R+G + +A ++ + + + +H + AD Sbjct: 120 SGTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFD 179 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-------KIN 227 Q+++F K +S+ + L R GI++YG +I Sbjct: 180 SQVKKFDHFKKMLRIKPRYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 239 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q + + ++ +++ A V YG K D I +GYADG+ ++ G Sbjct: 240 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K + PI+G++ MD M + + + + G +++ D + Sbjct: 299 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNI 345 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++ + R + Y Sbjct: 346 KAVADYANTIHYEIACLLSDRVPREY 371 >gi|297205120|ref|ZP_06922516.1| alanine racemase [Lactobacillus jensenii JV-V16] gi|297149698|gb|EFH29995.1| alanine racemase [Lactobacillus jensenii JV-V16] Length = 375 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 148/383 (38%), Gaps = 32/383 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++DL A+K N + A L + AVVK NAYG G K+A G F V Sbjct: 6 HRPAEVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGADGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121 ++E +LR + I VL G+ P E I + I + + + + + Sbjct: 66 AVLDEAFELRDASIVDPILVL-GVTPANEACIAAAHNISLTAPSLEWLKAADMALAKKDM 124 Query: 122 -HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQL 179 L +D+G R+G S + + + + +H A AD S Q+ Sbjct: 125 VLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSADSSYFDYQI 184 Query: 180 ERFRT--LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----- 232 +RF + K +A+++ + H + R GI LYG N + P Sbjct: 185 KRFNHLKNLLSIKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDLESKI 244 Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + ++ + + ++K +G + YG D I +GYADG LSG Sbjct: 245 TLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGF---- 300 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346 K + PI+G+I MD M + + + + G + I+ + Sbjct: 301 --------KIKVGDNFCPIVGRICMDQLMVLLPEKMPV--GTKVVIYSNKTEDPNSIKKA 350 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T +Y+L + R + Y Sbjct: 351 ADYVDTIHYELACLLSDRLPRIY 373 >gi|227549893|ref|ZP_03979942.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291] gi|227078039|gb|EEI16002.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291] Length = 362 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 167/374 (44%), Gaps = 27/374 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S + L +IDL A+ +N ++ L+G+A VVK NAY G ++ P + AG F Sbjct: 1 MVSMDLLTARIDLDAIAHNTRILSQLAGSACLMCVVKANAYNHGVSQVVPVMDAAGADAF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 ++ E ++R A+ V + PGQ+ + VP + L+ + Sbjct: 61 GTATLAEAAEVREL--TAKPVVSWLWVPGQDIPA------GIELGVPSIEHLRWLVDAHI 112 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P ++VDTG +R GL + + + + ++SHLA AD+P+ N Q + Sbjct: 113 NAPLHIKVDTGMHRSGLVEADWDK-AFSLAVRAGLNVRGLMSHLAVADEPAHPYNDEQAQ 171 Query: 181 RFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 FR I + LA++ +L P+ F R GI LYG H ++ Sbjct: 172 AFRRAIERARAHGLDVGCNHLANTPSLLSRPDLVFDQVRAGIGLYGLEPIAGAEHGLRPA 231 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ARI+ ++ +AG+ +SYG D +AV GYADG + G Sbjct: 232 MTWAARILAVKPLVAGDALSYGLTWSAPADGFVAVVPAGYADGVGRSWQGHL-------- 283 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP-DIKLDDVALASGTT 353 + ++ P +G++ MD + + D+ + VGD IFG + ++A GT Sbjct: 284 ---EVAVRARRYPQVGRVCMDQLLIWLGDNPEGVAVGDEAIIFGAGGMSATELAERVGTI 340 Query: 354 NYDLLVRIGTRYAK 367 NY+++ R + Sbjct: 341 NYEIVCSPKGRTVR 354 >gi|218674907|ref|ZP_03524576.1| alanine racemase protein [Rhizobium etli GR56] Length = 338 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 119/348 (34%), Positives = 182/348 (52%), Gaps = 15/348 (4%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ-ARIFVLY 84 + R AVVK +AYGLG E++A LY+ G + FFV E V+LR + A+IFVL Sbjct: 1 MLAPVRAGAVVKADAYGLGAERVAQTLYDQGCRHFFVAQFVEAVRLRPALAESAQIFVLN 60 Query: 85 GIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSLQEAL 143 G+ PG E ++ ++PV++S+ Q + + P LQ DTG +RLG +E Sbjct: 61 GLQPGNEVACAESGIVPVLNSLAQWRQWSATARRLKRCLPAVLQFDTGMSRLGFPWEERA 120 Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203 + + ++ I+SHLACADD S N Q + + G + S A+S G+ Sbjct: 121 ELAAALRDGANVEILFIMSHLACADDLESSQNGEQFAEMARIADEFPGFDISFANSGGVF 180 Query: 204 LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263 LG YH L RPGI+LYGG ++PM+ VV + ++ R +G + YGG Sbjct: 181 LGDAYHGVLARPGIALYGGAPSAGGTNPMEPVVRLDVAVVQTRTVPSGAKIGYGGTHVTR 240 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 ++ +A A GYADG P +L G + KG +PI+G+++MD DIT Sbjct: 241 SETRLATIAAGYADGLPRSLGDC-----------GAVYHKGIRLPIVGRVSMDSATVDIT 289 Query: 324 DSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + +G +++ GP+ L+DVA +GT +Y++L +G RY + Y Sbjct: 290 ALPEGALSLGSLVEVLGPNQTLEDVAGDAGTISYEILTGLGDRYDRHY 337 >gi|260219804|emb|CBA26704.1| Alanine racemase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 364 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 147/374 (39%), Gaps = 29/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL++N + +AR AVVK NAYG G E+ L G + Sbjct: 3 RPIQATIHTQALRHNLEVCRRAAPDARIWAVVKANAYGHGIERAFEGLR--GADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++R + I +L G+ ++ L + Q+ + H Sbjct: 61 LEEAQRVRNLGWRGPILLLEGVFEQRDLELCSRLGLWHTLHCQEQIDMLAIHK-TNEPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG ++ +++H + AD P + Q+ F+ Sbjct: 120 VFLKVNSGMNRLGFQPEQVRSAWTRLNALPQVDEISLMTHFSDADGPKGI--AGQMAVFK 177 Query: 184 TLISHYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKINKSHPMQT----VVT 237 G E ++++S+ L P R GI+ YG + +T Sbjct: 178 QATDDLPG-ERTVSNSAATLRHSGPGLVSDWVRAGIATYGSAPDYPEHDIAHWGLQPTMT 236 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A+II R AG+ V YG + I V A GYADGYP G Sbjct: 237 LAAKIIATRALSAGDTVGYGSNFTADKPMRIGVVACGYADGYPRIC-----------PTG 285 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 I G ++G+++MDM D+ +G + ++G + +D++A +GT Sbjct: 286 TPVLINGVRSRVVGRVSMDMITVDLDPVPQAGMGSEVTLWGRAANGAVLPIDEIASTAGT 345 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 346 VGYELMCALAQRVP 359 >gi|139439475|ref|ZP_01772907.1| Hypothetical protein COLAER_01932 [Collinsella aerofaciens ATCC 25986] gi|133775028|gb|EBA38848.1| Hypothetical protein COLAER_01932 [Collinsella aerofaciens ATCC 25986] Length = 381 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 108/384 (28%), Positives = 164/384 (42%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ID AL+ N + L + R VVK +AYG G + A +Y+AG F V Sbjct: 8 RWSWVEIDRGALRRNTRAYKNLLNPRQRLCCVVKADAYGHGAVECAKIMYSAGADMFAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSH 122 +V EGV+LR I +L + + +++P + S L + ++ G Sbjct: 68 TVNEGVELRQGGITKPILILSEPPIEAIPTLLEFDIMPSVYTSDFALAYGECAVAAGKVG 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 Y L ++TG NR+G+ + LDF + Q + +H A AD+PS +Q +RF Sbjct: 128 KYHLAIETGMNRIGVHYTQVLDFVRGINFHRGIQCDGVFTHFATADEPSGWDYKLQCQRF 187 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTV 235 + K A++ +L P+ HF + R G+ LYG + + V Sbjct: 188 TEAVQAIKDAGFECGIVHCANTPSSMLDPSMHFDMIRAGVGLYGMQPCELSGRVMQLDPV 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ AR+ + GE V YG ++ R I IGYADG TLS Sbjct: 248 MSVHARVTRVAHPAMGEGVGYGFTYRVPRTRVQICTLPIGYADGLSRTLSNRMD------ 301 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI-----TDSLSIEVGDYIQIFGPD----IKLDD 345 +G V +G I MD M I + E GD I I G D I +D+ Sbjct: 302 -----VLYRGERVHQVGNICMDQFMVAIQSNPAHEIPEAEYGDEIIIVGRDGDAEITMDE 356 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A GT NY++ G R K Y Sbjct: 357 MARLRGTINYEVACGFGMRLDKVY 380 >gi|72382936|ref|YP_292291.1| alanine racemase [Prochlorococcus marinus str. NATL2A] gi|72002786|gb|AAZ58588.1| alanine racemase [Prochlorococcus marinus str. NATL2A] Length = 402 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 106/385 (27%), Positives = 161/385 (41%), Gaps = 29/385 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +++D ++NN + G+ AVVK + YG G E +A + G V Sbjct: 29 RSRAWVEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGV 88 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSCGV 120 ++EEG++LR + +I +L + +E + S + + + Sbjct: 89 ATLEEGIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKNK 148 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-----HVN 175 L++DTG RLG + + + + + L I SHLA AD Sbjct: 149 KFAIHLKIDTGMTRLGCNCNQFKELINKIDCLENIALEGIYSHLAIADRYLENNTQLSFT 208 Query: 176 SVQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229 +QL RF ++ K I LA+S+G L HF + R G+SLYG Sbjct: 209 QIQLNRFEKVLKGLGKRNKFICRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFKSD 268 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + +AR+ L+R G V YG K R S +AV AIGYADG +LSG S Sbjct: 269 LKLSPALKVKARVTLVRDVGKGIGVGYGHFFKTQRASKLAVVAIGYADGVSRSLSGKISA 328 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 I G +VP +G I MD +FDITD I+ G + + G D I D Sbjct: 329 S-----------IDGVLVPQVGAIAMDQMVFDITDKPDIKTGQVLTLLGTDGEVCISPQD 377 Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370 SG+ +++L R + T Sbjct: 378 WCDLSGSIPWEVLCSFRNRLPRVVT 402 >gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] Length = 813 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 110/369 (29%), Positives = 163/369 (44%), Gaps = 23/369 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L AL++N + L + A+VK +YG G +IA L V V +E Sbjct: 457 LEINLNALEHNLNVYRGLVPKEVKMMAMVKAFSYGSGSFEIANLLQFNQVDYLTVAYADE 516 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126 GV+LR I V+ E ++ + S F S + + P + Sbjct: 517 GVELRNAGITLPIVVMSPDENAFESVVQHNLEPEIYSFRILHAFISFVRIKDLKNFPIHI 576 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQL---ERF 182 +VDTG +RLG EA + + ++ SHLA A +P + + Q+ ++F Sbjct: 577 KVDTGMHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLASAANPQDNAFTAEQILKLDQF 636 Query: 183 RTLISHYKGIE--ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + G +A++SGI L P+ +F + R GI +YG +QTV + Sbjct: 637 AKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMYGVEAS-RTDLSLQTVGVLKT 695 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I+ A E V Y L RDS IA IGYADGY GK Sbjct: 696 NVTQIKHIPASETVGYNRHGVLHRDSKIATIKIGYADGYDRRFGNGV----------GKM 745 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G++VP +G I MDM M D+TD + D + +F PDI A + GT Y+LLV Sbjct: 746 LVNGHLVPTVGDICMDMCMLDVTDIA-VSEEDEVVVF-PDITAA--ANSIGTIPYELLVN 801 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 802 ISQRVKRVY 810 >gi|262374558|ref|ZP_06067832.1| alanine racemase [Acinetobacter junii SH205] gi|262310554|gb|EEY91644.1| alanine racemase [Acinetobacter junii SH205] Length = 367 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 148/374 (39%), Gaps = 26/374 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+ N + + +++ AVVK NAYG G E++ AL F + Sbjct: 3 RPITAVIHTQALRQNLEVVRTSAPDSKVFAVVKANAYGHGIERVYDALKT--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E +LR I +L GI P + L + S Q+ + + + Sbjct: 61 IDEAKRLRALGWTGPILLLEGIFSPQDLFDCAEYQLSFTVHSEHQVEWIQQHIYPA-QFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q+ + ++H + AD QL Sbjct: 120 IFLKMNSGMNRLGFKPQQYRKIWQHLQRLNNVSNITHMTHFSDADGERFGQAGVEYQLAE 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVT 237 F + I G + S++ + H R GI LYG + K + ++ Sbjct: 180 FESTIQDLPGERSVSNSAAILRYPSQVHSDYVRGGIMLYGSSPDYPKHSIHDWGLAPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I I++ A E V YG I + A GYADGY + G Sbjct: 240 LRSELIAIQQLNANESVGYGSSFVAAHAMTIGIVACGYADGYQR-----------TSPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G +G+++MDM +T + E+G + ++G + +DDVA ASGT Sbjct: 289 TPVLVNGIRTRTIGRVSMDMLAVYLTPVPNAEIGSEVVLWGTSKTGQILSIDDVAAASGT 348 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 349 VGYELMCGVTARVP 362 >gi|238765457|ref|ZP_04626377.1| Alanine racemase, catabolic [Yersinia kristensenii ATCC 33638] gi|238696314|gb|EEP89111.1| Alanine racemase, catabolic [Yersinia kristensenii ATCC 33638] Length = 355 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 156/365 (42%), Gaps = 20/365 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++L+AL +N + + A+ +VVK NAYG G +I L F + Sbjct: 3 RPISATLNLSALHHNLSLVRQRAKTAKIWSVVKANAYGHGLARIWSGLAA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E + LR I +L G Q+ ++ D + K Sbjct: 61 LNEAILLREQGWHGPILLLEGFFQPQDLVLLDHYRLTTSVHSDWQLEAIKAARLTAPLNI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ ++G NRLG + +A + + ++SH A AD+ Q + + Sbjct: 121 YLKFNSGMNRLGFPVGQAQAVWQWAKSLSNVGEVTLMSHFANADNSIG--VDEQFTQIQQ 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEA 240 H +S+ IL P H+ RPGI LYG + + + ++ V++ + Sbjct: 179 ATGHIPAARCFA-NSAAILRNPQTHYDWVRPGIILYGASPSGDMADIAGMGLRPVMSLRS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II ++ AG+ V YGG+ + + I V A GYADGYP G Sbjct: 238 EIIAVQSLSAGQRVGYGGRYRASGAQRIGVVACGYADGYPRLA-----------PSGTPI 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + +G I+MDM D+T ++G ++I+G ++ +D VA A+GT Y+L+ Sbjct: 287 MVDGILTHTVGAISMDMLTVDLTPCPQAQIGSKVEIWGENVLIDQVAKAAGTVGYELMCA 346 Query: 361 IGTRY 365 + +R Sbjct: 347 LASRV 351 >gi|319893025|ref|YP_004149900.1| Alanine racemase [Staphylococcus pseudintermedius HKU10-03] gi|317162721|gb|ADV06264.1| Alanine racemase [Staphylococcus pseudintermedius HKU10-03] Length = 382 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +K++L A+ N++++ L N VVK NAYGLG +IA L G + F V + Sbjct: 7 RTTTMKVNLDAITENYYALTKLQPNKTMMPVVKANAYGLGSIQIAQHLSQLGAEFFCVAT 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSCGVSH 122 ++E ++LR++ + +I +L I P + + S + + Sbjct: 67 LDEAIELRMHGIKEKILILSSIPPDAINKAIQHRVAVTVPSRAWLEAATAEIDEDNEKTL 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG NRLG+ EA N + + + D + +Q ERF Sbjct: 127 WLHIKVDTGMNRLGVKDIEAYHDIINFIHAHKNLVFEGAFSHFHSADEDNDSAHMQYERF 186 Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVT 237 +I + +S+G L RPGI+LYG + + V Sbjct: 187 EEIIESTEHPTYIHMQNSAGTLRFNPSLCNAFRPGIALYGYYPSTFIEKIATAQLVPAVQ 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ ++ + GE V YG D IA+ IGYADGY ++ G Sbjct: 247 LVTEVMEVKSLIKGETVGYGQTYTAPEDMTIALLPIGYADGYLRSMQ------------G 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 I I+G+++MD T + ++++G+ + + ++ +A T Sbjct: 295 ANVRIGTTECEIVGRVSMDRTAIRVP--ATVQMGEEVILIDDQAHTSQSVESLAAQQQTI 352 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L IG R + Y Sbjct: 353 NYEVLCNIGRRVPRVY 368 >gi|194477028|ref|YP_002049207.1| alanine racemase [Paulinella chromatophora] gi|171192035|gb|ACB42997.1| alanine racemase [Paulinella chromatophora] Length = 395 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 102/383 (26%), Positives = 170/383 (44%), Gaps = 27/383 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + ++I+ +A++ N ++ L + ++ AVVK + YG G A + G Sbjct: 17 LHPRQRAWVEINRSAIEFNTRVLHKLIAPTSQLMAVVKADGYGHGALNAAESAQAGGASS 76 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM--S 117 + V +++EGV+LR QA I VL + +E + S + + + Sbjct: 77 YGVATLQEGVQLRQGGIQAPILVLGNLIQSEELRACHHWRLMPTISTIREALICETLGSG 136 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVN 175 G P L++DTG RLG++ +E K +++ I SHLA AD + Sbjct: 137 SGRIMPLHLKLDTGMTRLGVNWKEGSRIAKALSELKGIKIAGIYSHLAMADVSNKVETFT 196 Query: 176 SVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229 +Q +RF ++++ LA+S+G L HF + R G++LYG + Sbjct: 197 HLQKQRFLEVLNNLDNQNMNFGYRHLANSAGTLHDSGLHFDMVRVGLALYGQVPSSKLTS 256 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ + AR+ LIR+ +G VSYG + S +AV +IGYADG P LSG Sbjct: 257 ITNLKPALQLRARVTLIREVPSGVGVSYGHGHTTSIPSRLAVISIGYADGIPRVLSGQM- 315 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 + KG + +GKITMD + D T S+ VG + + G I Sbjct: 316 ----------QALFKGQRLQQVGKITMDQLILDCTSVKSLTVGSIVTLLGKSGKHQINTF 365 Query: 345 DVALASGTTNYDLLVRIGTRYAK 367 D + T +++L R + Sbjct: 366 DWSEKCNTIPWEILCGFKHRLPR 388 >gi|119715145|ref|YP_922110.1| alanine racemase [Nocardioides sp. JS614] gi|119535806|gb|ABL80423.1| alanine racemase [Nocardioides sp. JS614] Length = 378 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 166/388 (42%), Gaps = 32/388 (8%) Query: 1 MHSNEFLRLKI--DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M++ R +I DL A++NN + ++G A VVK + YG G + A A AG + Sbjct: 1 MNAPPVARAEIVVDLAAIRNNVRRLREVTGVAS-MTVVKADGYGHGMLEAARAAREAGSE 59 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMS 117 V +++E LR R+ + ++ S + + + + Sbjct: 60 WLGVATLDEAAALRAAGDTGRVLTWLTVPGEDYASAIAADVDVTAYSPAELDEIAAGVRA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHV 174 G L++DTG +R G ++++ D +++ I SH AC+D+P Sbjct: 120 AGRPARVQLKIDTGLSRGGATVEQWPDLVAAARAGEEAGRWRVTGIWSHFACSDEPDHPA 179 Query: 175 NSVQLERFRT--LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--- 226 N+ Q FR ++ G+ LA+S+ LL P+ F L R G++ YG Sbjct: 180 NAAQETAFRHALEVADRAGLRPEVRHLANSAAGLLRPSARFDLVRFGLASYGLDPAPGHL 239 Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + +TA A ++L + AG VSYG + + + +GY DG P Sbjct: 240 AEADLGLVPAMTARAVLVLTKPLPAGAGVSYGHTWVADTPTSVGLVPVGYGDGIPRHAGN 299 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341 + + G + G++ MD + D+ L +E G + +FGP + Sbjct: 300 H-----------AQVLVDGKRRAVRGQVCMDQFVVDLGGDL-LEPGHAVVLFGPGTAGEP 347 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 + + A A+GT +Y+++ RIG R ++ Y Sbjct: 348 TVQEWADAAGTISYEIISRIGGRMSRRY 375 >gi|269928988|ref|YP_003321309.1| alanine racemase [Sphaerobacter thermophilus DSM 20745] gi|269788345|gb|ACZ40487.1| alanine racemase [Sphaerobacter thermophilus DSM 20745] Length = 408 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 144/377 (38%), Gaps = 29/377 (7%) Query: 11 IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 IDL A N + L A AV+K NAYG G A AG V +EE + Sbjct: 20 IDLDAFAGNIAYVRSQLPEGAEVIAVIKANAYGHGLVPCGRAALAAGASRLAVARIEEAL 79 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYALQV 128 LR A I VL +P + ++ + + S L + P L+V Sbjct: 80 LLRAAGVVAPILVLSPANPALARQAAESGIALAVGSATGLNRLLDALGDDLPPLPVHLKV 139 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF-----R 183 DTG +R G+ + ++ + ++ + +H A AD V Q RF Sbjct: 140 DTGMHRFGVEPEGVVELARALAREPRVRVEGVFTHFATADAADDRVLQEQTRRFAAAVQA 199 Query: 184 TLISHYKGIEASLASSSGILLG----PNYHFQLTRP-GISLYGGTDKINKSH--PMQTVV 236 + + +A+S+ IL G P + G+ LYG P++ V+ Sbjct: 200 LAAAGLQPPLVHMANSAAILRGVVEIPAPRATIAVRAGLILYGLNPSRELPLPAPIRPVL 259 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 R+ + GE +SYG R A IGYADG LS Sbjct: 260 RLVTRVGQVFTVPPGEGISYGWSYIAERPIRCANLPIGYADGLVRLLSNQ---------- 309 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G + G + PI G+I MD T+ ++ + + GD + + D A +GT Sbjct: 310 -GWAVVGGAVCPIRGRICMDQTVIEVEAAPDVAEGDEAVLLSDGRDGAMTADQAAALAGT 368 Query: 353 TNYDLLVRIGTRYAKFY 369 NY+++ + R + Y Sbjct: 369 INYEIVSALAARIPRVY 385 >gi|207859294|ref|YP_002245945.1| alanine racemase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206711097|emb|CAR35471.1| alanine racemase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 368 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 106/360 (29%), Positives = 171/360 (47%), Gaps = 15/360 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + + P+++SV Q + + + + P +Q+ Sbjct: 76 LRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG++ ++ + IISHLA AD P +N Q + Sbjct: 136 DSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAKEA 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 196 FPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLSILRVQDV 254 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G + YG TR IA + GYADG P L +G +P Sbjct: 255 PVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL-----------RPPAGVCWRGVRLP 303 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +LG++ MD M D + + GD ++ G L++VA A T Y+++ R+G R+ + Sbjct: 304 VLGRVCMDSFMVDASAIMP-TPGDVVEFIGVSQTLEEVAAACDTIPYEIMTRLGGRFRRI 362 >gi|239623709|ref|ZP_04666740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521740|gb|EEQ61606.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 396 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 158/385 (41%), Gaps = 28/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + I L A+ N +M A L + VVK + YG G +A + V Sbjct: 1 MKPYSRVYAAIHLDAVAANMEAMKANLPASTSMIGVVKTDGYGHGAVPVART-IDPYVDG 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 + V SV+EG+ LR + + I VL H + + + ++ P + + + + Sbjct: 60 YAVASVDEGIILRRHGIRKMILVLGVTHESRFEDLVQYDIRPAMFRYGEAQKLSAVAAAM 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G L VDTG NR+G+ E+ D + + ++ + +H A AD+ + Sbjct: 120 GKKANIHLAVDTGMNRIGMKPDQESADMVYRINMLEGIRIEGMFTHFARADEADKTTYGL 179 Query: 178 QLERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q ++ + I S+ + + R GIS+YG Sbjct: 180 QFGKYNDFVEMLGSRGITIPIRHCSNSAGIVESLGANGLDMVRAGISIYGLYPSDEVGKD 239 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + + ++ I I+ G+ VSYGG R +A +GY DGYP +LSG Sbjct: 240 AVKLTPAMELKSFITYIKTIEPGDAVSYGGTFVADRQMRVATIPVGYGDGYPRSLSGR-- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G I+G ILG+I MD M D+T D + + G D I ++ Sbjct: 298 ---------GSVLIRGQRARILGRICMDQFMVDVTGIAGAAEDDEVTLIGRDGDGFIAVE 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++A A G +Y+++ IG R + Y Sbjct: 349 ELAGAGGGFHYEIICGIGKRVPRVY 373 >gi|262277398|ref|ZP_06055191.1| alanine racemase [alpha proteobacterium HIMB114] gi|262224501|gb|EEY74960.1| alanine racemase [alpha proteobacterium HIMB114] Length = 359 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 15/365 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE-KIAPALYNAGVQDFFVTSV 65 L I+L A+K N+ ++ + VK ++YGLG KI L NAG + FFV ++ Sbjct: 6 PTLDINLNAVKQNYLTIKKFCSKSEICGTVKASSYGLGGHNKIVTTLKNAGCKRFFVANI 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG+ +R I +L G++ G+EKI++ NL PVI+++ QL + Sbjct: 66 NEGIFIRKKFKSIIINILNGLNRGEEKILYKHNLNPVINTISQLKKWLIFTKNKRKDKLV 125 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + DTG RLG+ + + + +I+SHLACA D ++ N Q ++F + Sbjct: 126 IHFDTGMCRLGIQEDQITEVLKLKDQINKFKEVIIMSHLACAGDKKNNYNEKQRKKFEKI 185 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + G + SLA+S GI LG YH+ L RPGI+LYGG+ +N + VV+ +A II I Sbjct: 186 RRTFPGYKYSLAASGGIFLGKKYHYDLVRPGINLYGGSKSLNSKI--KHVVSLKAPIIQI 243 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 GE Y K RDS+ A +GYADG + LS G K Sbjct: 244 NNLKKGETAGYSRTFKAKRDSITATIPMGYADGIGIRLSN-----------KGYVHFKNK 292 Query: 306 MVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P++G+++MD+ + DIT + I+VGD+++++ +D+ A +GT Y ++ I R Sbjct: 293 KIPMIGRVSMDLIILDITKFKNKIKVGDFVEVYNDKFTIDNFANLTGTIPYRIITCISKR 352 Query: 365 YAKFY 369 Y + Y Sbjct: 353 YLRNY 357 >gi|310815865|ref|YP_003963829.1| alanine racemase [Ketogulonicigenium vulgare Y25] gi|308754600|gb|ADO42529.1| alanine racemase [Ketogulonicigenium vulgare Y25] Length = 345 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 182/362 (50%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW + A+S A AV+K +AYG G ++ AL AGV+ FFV EEG Sbjct: 6 LTIDLDAIIGNWRKLAAMS-RAEAGAVLKADAYGTGAARVGAALAEAGVRKFFVAVAEEG 64 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 V LR P IFVL G +I NL PV++S Q + P+A+Q Sbjct: 65 VALREAVGPAPEIFVLSGHGTTDTALIRQLNLTPVLNSPQQ---LRRQFDALPGRPFAIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG ++ T LI+SHLACAD+P +N+ QL+ F+ + Sbjct: 122 LDTGMNRLGFEWEDWAAVTDEVL---GAGPRLIMSHLACADEPDHPMNAYQLDLFKQMTE 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + + SLA++ GILLGP+YHF L RPGI L+G + + + +I R Sbjct: 179 GMR-VSRSLAATGGILLGPDYHFDLVRPGIGLHGAAPYAQGA----QALQLDLPVIQTRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 + GE+V YG + R + +A A GYADG L G + Sbjct: 234 LIEGEVVGYGNTWQARRPTRVATLAAGYADGVLRVLG-----------AGTNVYSGDIAC 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 PI+G+I+MD+ DITD + + + GP +DD+A+ + T Y++L + RY++ Sbjct: 283 PIIGRISMDLITVDITDLDADPE--VLTLIGPQQSVDDLAVTAKTIGYEILTSLSPRYSR 340 Query: 368 FY 369 Y Sbjct: 341 QY 342 >gi|256852008|ref|ZP_05557395.1| alanine racemase [Lactobacillus jensenii 27-2-CHN] gi|260661423|ref|ZP_05862336.1| alanine racemase [Lactobacillus jensenii 115-3-CHN] gi|282931888|ref|ZP_06337367.1| alanine racemase [Lactobacillus jensenii 208-1] gi|256615420|gb|EEU20610.1| alanine racemase [Lactobacillus jensenii 27-2-CHN] gi|260547878|gb|EEX23855.1| alanine racemase [Lactobacillus jensenii 115-3-CHN] gi|281303999|gb|EFA96122.1| alanine racemase [Lactobacillus jensenii 208-1] Length = 375 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 148/383 (38%), Gaps = 32/383 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++DL A+K N + A L + AVVK NAYG G K+A G F V Sbjct: 6 HRPAEVEVDLLAIKKNLQAEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGADGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121 ++E +LR + I VL G+ P E I + I + + + + + Sbjct: 66 AVLDEAFELRDASIVDPILVL-GVTPANEACIAAAHNISLTAPSLEWLKAADMALAKKDM 124 Query: 122 -HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQL 179 L +D+G R+G S + + + + +H A AD S Q+ Sbjct: 125 VLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSADSSYFDYQV 184 Query: 180 ERFRT--LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----- 232 +RF + K +A+++ + H + R GI LYG N + P Sbjct: 185 KRFNHLKNLLSIKPKWIHVANTASSIFDKQIHSDIVRFGIGLYGLNPSSNPASPDLESKI 244 Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + ++ + + ++K +G + YG D I +GYADG LSG Sbjct: 245 TLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGIIRKLSGF---- 300 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDV 346 K + PI+G+I MD M + + + + G + I+ + Sbjct: 301 --------KIKVGDNFCPIVGRICMDQLMVLLPEKMPV--GTKVVIYSNKTEDPNSIKKA 350 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T +Y+L + R + Y Sbjct: 351 ADYVDTIHYELACLLSDRLPRIY 373 >gi|313835050|gb|EFS72764.1| alanine racemase [Propionibacterium acnes HL037PA2] gi|314929020|gb|EFS92851.1| alanine racemase [Propionibacterium acnes HL044PA1] gi|314970970|gb|EFT15068.1| alanine racemase [Propionibacterium acnes HL037PA3] gi|328905717|gb|EGG25493.1| alanine racemase 1 [Propionibacterium sp. P08] Length = 375 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 146/373 (39%), Gaps = 24/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +I+ + V +V E Sbjct: 10 AIIDLSAIAANLTEVRKRAGDRKVLFAVKADAYGHGAVEISRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 G +L I L P + + + L S+ GV+ + Sbjct: 70 GQELVESGITLPILKLSPADPWDTNTAITSGMRLTVVDFDTLDAVSRAAVQLGVTAKVHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185 VD+G R+GL + + T + + ++ + +HL +D P +++ F Sbjct: 130 AVDSGMGRIGLPPECLAELTAAADCAEGIEVEGVFTHLPISDVPEGDEFTHHEIDTFMNA 189 Query: 186 I----SHYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGTDKINKSHPMQTVV-TAE 239 + + ++SG +LG + + R GI YG ++ V + Sbjct: 190 VSQVEADRGPFPLVHLANSGAILGHDLGRTSMVRAGIVGYGYDPDLHADRAALHPVLSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ V YG + IA +GYADG LS G Sbjct: 250 SHVTFVKTVNPGDTVGYGRTWTARETTKIATIPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I G + PI+G+I MD M D+ S+ VGD + + G + +D+A GT +Y Sbjct: 299 VLIGGSVRPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLSANDMAELLGTISY 358 Query: 356 DLLVRIGTRYAKF 368 ++ I R + Sbjct: 359 EITCAISKRVDRR 371 >gi|260072540|gb|ACX30440.1| alanine racemase [uncultured SUP05 cluster bacterium] Length = 349 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 157/358 (43%), Gaps = 20/358 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 I +AL +N + ++ ++VK +AYG + P + + V+ + E Sbjct: 5 ASISQSALAHNLSVVRQSCSESKIVSMVKADAYGHHLTLVDPIIDES--DLLAVSELSEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KLR T + + + + + + V+ + + + +++ Sbjct: 63 QKLREKTDKPILLLSGVYSQDELQSALALDCHVVVH---EKEQINLIAQTKERIGVWIKI 119 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG +RLGL E + N L + ++SH ACAD+ N QL F L Sbjct: 120 DTGMHRLGLLANEYHECIEAFKNNTLVDVECVMSHFACADEIDHPTNESQLNEFNQLTDD 179 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 I+ S+A+S+ IL + F RPGI LYG + ++ V+ A I+ I+ Sbjct: 180 S--IKRSMANSAAILSNKDALFDFVRPGIMLYGISPFGTDESDLKPVMELSAPILSIKTI 237 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 GE V YG + + IA+ IGY DGYP G I G + P Sbjct: 238 QTGESVGYGATWTANKKTNIAIIGIGYGDGYPRHAKN-----------GTPVCINGKLCP 286 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRY 365 ++G+++MD+ +I DS++ +VGD ++G + + + VA S T Y+L+ + +R Sbjct: 287 LIGRVSMDLICVNI-DSITAKVGDIATLWGNEKLSAETVATWSDTIGYELVTGVSSRV 343 >gi|323974227|gb|EGB69357.1| alanine racemase domain-containing protein [Escherichia coli TW10509] Length = 355 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 15/356 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++L A+ +N+ ++ A+ AV+K NAYGLG E IAPALY A + FFV + EGV Sbjct: 3 VNLAAIVDNYRTLARHVAPAQCGAVLKANAYGLGAEAIAPALYAANCRIFFVAQLSEGVA 62 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128 LR P A + VL G+ P + + P+++S+ Q+ + L+ + Sbjct: 63 LRKILPTDAMVVVLNGVMPEAMAYCYAQQITPLLNSIDQVMAWLTLLETRQQRRAVMIQL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG+ Q+ + + IISHLA AD P +N Q F+ + Sbjct: 123 DSGMSRLGVMPQQLMRLAAIFRERNWPAPDYIISHLANADRPDHALNVAQHALFQQAKTV 182 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPGI+L+G + S P++ T I+ ++ Sbjct: 183 FPSSRFSLANSCGMFLQPGWREDLCRPGIALFGVA-QPWFSRPLKPAFTLTLTILRVQDV 241 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 AG V YG TR IA + GYADG P + +G +P Sbjct: 242 PAGTPVGYGSTITATRPLRIATISAGYADGVPRNM-----------RPPAGVCWRGVRLP 290 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +LG++ MD M D + GD ++ G L+ VA A T Y+++ R+G R Sbjct: 291 VLGRVCMDSFMVDASAVTP-TAGDKVEFIGAGQTLEQVAAACNTIPYEIMTRLGAR 345 >gi|315107293|gb|EFT79269.1| alanine racemase [Propionibacterium acnes HL030PA1] Length = 375 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFPRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|292488465|ref|YP_003531347.1| alanine racemase [Erwinia amylovora CFBP1430] gi|292899653|ref|YP_003539022.1| alanine racemase [Erwinia amylovora ATCC 49946] gi|291199501|emb|CBJ46618.1| Alanine racemase, catabolic [Erwinia amylovora ATCC 49946] gi|291553894|emb|CBA20939.1| Alanine racemase [Erwinia amylovora CFBP1430] gi|312172607|emb|CBX80863.1| Alanine racemase [Erwinia amylovora ATCC BAA-2158] Length = 356 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 149/367 (40%), Gaps = 20/367 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL+ N + AR +VVK NAYG G E + +L F + Sbjct: 2 SRPIVATINRAALRQNLAIARHSAAGARLWSVVKANAYGHGIEHVWQSLTE--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G + + D + Sbjct: 60 NLEEAILLRECGWKKPILLLEGFFHPDDLPLLDRYRLTTSVHSNWQINALAQAKLSAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + +++H A A+ ++ Sbjct: 120 IYLKMNSGMNRLGFQPDRVHSVWQKLRALENVGELTLMAHFADAETTEGVAGPLKRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SLA+S+ L P H+ RPGI LYG + +Q V+T Sbjct: 177 EQAAEGLECPRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWRDIAGSGLQPVMTLT 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +++ AG V YGG+ + I V A GYADGYP G Sbjct: 237 SEIIAVQQLAAGSSVGYGGRYRANCSQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G ++MDM D+T +G ++++G ++K+DDVA ASGT Y+L+ Sbjct: 286 IRVDGEKTQIVGAVSMDMITVDLTPCPRAGIGSQVELWGDNVKIDDVAAASGTVGYELMC 345 Query: 360 RIGTRYA 366 + R Sbjct: 346 ALAPRVP 352 >gi|295398172|ref|ZP_06808218.1| alanine racemase [Aerococcus viridans ATCC 11563] gi|294973522|gb|EFG49303.1| alanine racemase [Aerococcus viridans ATCC 11563] Length = 387 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 159/388 (40%), Gaps = 35/388 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + + L A+ +N+ ++ GN AVVK + YGLG KIA AL + G F V Sbjct: 6 HRPSKAIVSLDAIIHNYFAIKKHIGNKAVMAVVKADGYGLGAVKIADALQSRGADGFAVA 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E ++LR A I +L P ++ + + +SS+ L + K Sbjct: 66 VADEALELRDAGIIAPIMILGLTDPDDAWLLANLEIGVTVSSLDYLKYAKKHDKDFSRLH 125 Query: 124 Y---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS--LIISHLACAD---DPSSHVN 175 L+VD+G R+G+ + + K + + +H A AD D Sbjct: 126 QLNVHLKVDSGMGRIGVRSAKEAQKIIDYIAKHPKKFKLASVFTHYATADSFTDHGKDKV 185 Query: 176 SVQLERFRTLISH------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK- 228 Q + F +L+ ++S+ L P R G+ LYG + Sbjct: 186 QAQSDFFESLLGQLDYSALGYTPLFHQSNSALSLWYPEKTLDAARLGLGLYGSIPSMEDV 245 Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + +T E II +++ AG+ +SYG D +A IGYADG+ + GL Sbjct: 246 ASPVDFKQALTLETEIIYVKQMHAGDTISYGADYVAGTDEWVATLPIGYADGWQRSYLGL 305 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--IKLD 344 D + G P +G+I MD + + + + G + + G + +D Sbjct: 306 D------------AIVDGERCPSVGRICMDQMIIRLPHEMPV--GAKVTLIGTNGGQTVD 351 Query: 345 --DVALASGTTNYDLLVRIGTRYAKFYT 370 DVA +GT +++L +G R + YT Sbjct: 352 VVDVASHAGTIAHEVLTNLGQRLPREYT 379 >gi|114797948|ref|YP_759453.1| alanine racemase [Hyphomonas neptunium ATCC 15444] gi|114738122|gb|ABI76247.1| alanine racemase [Hyphomonas neptunium ATCC 15444] Length = 351 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 188/368 (51%), Gaps = 21/368 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ R + + +NW +++AL A TAAVVK +AYGLG ++A AL AG Q FFV Sbjct: 2 SQMPRATVLTGNIADNWRTLDALHPGATTAAVVKADAYGLGAMRVARALRIAGCQTFFVA 61 Query: 64 SVEEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 EEG+ +R ARIFVL G + D +L V+SS + + Sbjct: 62 YAEEGLIVRKAAGKAARIFVLNGPVRSEMATYRDADLTAVLSSEAHVKLW----GTAPKG 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 AL DTG NRLGL + + + Q LI+SHLACADDP + N+ Q + F Sbjct: 118 SCALHFDTGMNRLGLPMD---MSEKDLAALRRLQPVLIMSHLACADDPENPANTAQRKAF 174 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + ASLA+S+G LG + + LTRPG++LYGGT K ++ V EA I Sbjct: 175 NEISDAFPDTPASLANSNGCYLGKGFAYDLTRPGLALYGGTTPPEK-VKLKPGVILEASI 233 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + G V YGG L D ++A A+GYADG P + + G++ Sbjct: 234 LATFSGQTGTKVGYGGTHTLPEDRILATCALGYADGIPRAGANQIT-----------GWL 282 Query: 303 KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 +G P+LG+I+MD+ D+TD + + G ++ G + KL+ A A GT Y+LL + Sbjct: 283 EGNPCPVLGRISMDLITLDVTDCVKHAKPGARVEFLGENAKLEVQAAACGTLGYELLTGL 342 Query: 362 GTRYAKFY 369 G R + Y Sbjct: 343 GPRVQRVY 350 >gi|256545190|ref|ZP_05472556.1| alanine racemase [Anaerococcus vaginalis ATCC 51170] gi|256399231|gb|EEU12842.1| alanine racemase [Anaerococcus vaginalis ATCC 51170] Length = 368 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 29/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N L +DL + NN S+ S N++ AV+K +AYGLG ++A + N + Sbjct: 2 MEENYLL---VDLDKILNNIKSIKEKSQNSKFCAVLKADAYGLGSLEVANYIKNH-IDYI 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +E LR + I +L + + ++ VI + + + Sbjct: 58 AVAQFKEAKYLRDNGIKIPILILGYLPIDKYNECGKLDIDVVIYDLDYAKEINSKL--NS 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + +DTG R+G ++ K SH A AD+ + Q + Sbjct: 116 KINCHIGLDTGHTRIGFR-DFEIEKIKKLKELKNLNFIGAFSHFATADEKDLTYTNEQYK 174 Query: 181 RFRTLISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQ 233 +F +I ++ ++S + ++ L R GISLYG ++ Sbjct: 175 KFTYIIDKIKDDFDLKLVHIANSAASMEYDFKSDLLRVGISLYGVYPSDYIKEISKIKLE 234 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V +A+I ++ G +SYG ++D +A AIGYADG+ S + Sbjct: 235 QVFEFKAQISFVKNVKKGTSISYGRTFTASKDMKVATVAIGYADGFKRAFSNI------- 287 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G+ + G + ++G++ MD M D++D ++GDYI ++ PDI + A T Sbjct: 288 ----GEVLVNGKLAKVVGRVCMDQMMIDVSDI-DCKIGDYITLY-PDIYKE--AKKINTI 339 Query: 354 NYDLLVRIGTRYAKFY 369 Y+L+ I R + Y Sbjct: 340 PYELMTSISKRVPRIY 355 >gi|323487115|ref|ZP_08092423.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum WAL-14163] gi|323694622|ref|ZP_08108788.1| alanine racemase [Clostridium symbiosum WAL-14673] gi|323399616|gb|EGA92006.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum WAL-14163] gi|323501390|gb|EGB17286.1| alanine racemase [Clostridium symbiosum WAL-14673] Length = 393 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 26/375 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I+L + N +M A L VVK + YG G +A A + V + V +VEE Sbjct: 10 AEINLDNIIKNMETMAAGLPSGTGIIGVVKTDGYGHGAVPVAKA-IDPFVCGYAVAAVEE 68 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 G+ LR + + +L H K + D ++ P + + SK G + + Sbjct: 69 GIILRKHKITKPVLILGSTHERYFKELLDYDIRPALYEYSKAEKLSKTAVKEGKTAKIHI 128 Query: 127 QVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG +R+G EA + ++ + +H + AD+ +Q R+ Sbjct: 129 ALDTGMSRIGFQPGEASVREVERIHTLPGIRIEGLFTHFSKADESDKDFTELQYRRYMEF 188 Query: 186 IS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTA 238 +GIE A+S+ I+ P R GIS+YG ++N+ P+ + Sbjct: 189 NDALKQRGIEIPVRHCANSAAIMDLPQMGLDAVRAGISMYGIYPSDEVNREMPLYPAMEI 248 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + + ++ G VSYGG R IA + GY DGYP +LSG G Sbjct: 249 RSFVTCVKDIEPGTSVSYGGTFTAKRRMRIATISAGYGDGYPRSLSG-----------KG 297 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 I+G PILG++ MD M D+TD D + G D + ++ +A G Sbjct: 298 YVLIRGRRAPILGRVCMDQFMVDVTDIPGAAEEDRATLAGRDRDEMLSMERLADLCGGFR 357 Query: 355 YDLLVRIGTRYAKFY 369 Y++ +G R + Y Sbjct: 358 YEIPCVLGKRVPRVY 372 >gi|99081620|ref|YP_613774.1| alanine racemase [Ruegeria sp. TM1040] gi|123077575|sp|Q1GFQ4|ALR_SILST RecName: Full=Alanine racemase gi|99037900|gb|ABF64512.1| alanine racemase [Ruegeria sp. TM1040] Length = 345 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 191/365 (52%), Gaps = 25/365 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RLKI+L AL NW +++A + N TAAVVK N YGL ++ AL AG ++FFV E Sbjct: 4 ARLKINLDALAINWRNLDAKT-NCETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG+ LR P I V G G K++ D L P+++S+ Q+ + + + HP+ Sbjct: 63 EGIALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNSLDQMLRHFESL---PGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + + ++ L++SHLAC+D+P +N+ QL+ F + Sbjct: 120 VQLDSGMNRLGMEAAEWMAVRDIALDQ---NPVLLMSHLACSDEPGHGMNAYQLKNFIEM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 I SLA++ G+LLG +YHF L RPGI LYGG + VV E +I + Sbjct: 177 TEG-LNIPRSLAATGGLLLGRDYHFDLCRPGIGLYGGAPYADA----LPVVELEVPVIQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG RDS IA A GYADG G + G Sbjct: 232 RDLAPGESVGYGNTWIAQRDSKIATIAGGYADGLHRAFQ----------RQGIMAYAGGT 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+I+MD+ D+TD + Y+ + +D +A A+ T Y++L +G RY Sbjct: 282 PCPVVGRISMDLITVDVTDLAEVPP--YLSLMNETQTVDVLANAADTIGYEVLTSLGNRY 339 Query: 366 AKFYT 370 A+ Y+ Sbjct: 340 ARTYS 344 >gi|171057608|ref|YP_001789957.1| alanine racemase [Leptothrix cholodnii SP-6] gi|226711053|sp|B1Y2H6|ALR_LEPCP RecName: Full=Alanine racemase gi|170775053|gb|ACB33192.1| alanine racemase [Leptothrix cholodnii SP-6] Length = 377 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 155/377 (41%), Gaps = 26/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL +N +G+A+ AV+K NAYG G E++ PAL G + Sbjct: 3 RPIEALIHPDALAHNLLQARRHAGDAKLWAVIKANAYGHGIERVWPALL--GADGLAMLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R + + +L G ++ NL V+ Q+ + + H Sbjct: 61 LDEAQRVRNLGWRGPVLLLEGCFEARDLELCSRLNLWHVVHHDDQIGWLAAHK-THQPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS--SHVNSVQLER 181 L++++G NRLG + Q +++H + AD P + + Q+ R Sbjct: 120 VFLKMNSGMNRLGFTPQALRSAWVRLNALPQVDEISLMTHFSDADSPRPGADGIAAQVAR 179 Query: 182 FRTLISHYKGIEASLASSSGILLGP---NYHFQLTRPGISLYGGTDKINKSHPMQT---- 234 F G E SL++S+ IL R GI YG + + Sbjct: 180 FVEATHDLPG-ERSLSNSAAILRHCERAEVRADWVRSGILSYGSSPDHPQHDIGHWNLRP 238 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T +R+I ++ AG+ V YG + + I + A GYADGYP G Sbjct: 239 AMTLRSRLIATQQLQAGDSVGYGSRFVAQQPMRIGIVACGYADGYPRHAPGDTGN----- 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-----KLDDVALA 349 + G +G+++MDM D+++ + VG + ++G +D VA A Sbjct: 294 --ATPVLVDGLRTHTVGRVSMDMLAVDLSELPAAGVGSEVTLWGHGPHGSLLPIDAVAQA 351 Query: 350 SGTTNYDLLVRIGTRYA 366 +GT Y+L+ + R Sbjct: 352 AGTIGYELMCALAQRVP 368 >gi|322390146|ref|ZP_08063680.1| alanine racemase [Streptococcus parasanguinis ATCC 903] gi|321143177|gb|EFX38621.1| alanine racemase [Streptococcus parasanguinis ATCC 903] Length = 370 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 74/378 (19%), Positives = 154/378 (40%), Gaps = 25/378 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNART-AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + ++DL A+ N ++ + AVVK NAYG G + L V F Sbjct: 5 KHRPTVARVDLDAIAFNVQQVSDHIPSQALKYAVVKANAYGHGVVAVTKKLAPQ-VDGFC 63 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V++++E +++R Q I +L + + + ++ ++S+ L + Sbjct: 64 VSNMDEALEIREEGLQHPILILGVVPSETVNLAKEHDIRLTVASLAWLDQLLGQEADLSG 123 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VD+G R+G E + ++ I +H A AD+ Q + Sbjct: 124 LKVHIKVDSGMGRIGFRRIEEIKEAERLLLAAGAEIEGIFTHFATADEADDRKFQAQYQF 183 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVV 236 F+ +++ + + + +S+ L + F R G +YG + + ++ + Sbjct: 184 FKEVLAALETLPPIVHASNSATSLWHADTIFTAVRLGDVMYGLNPSGSVLALPYEIKPAL 243 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + ++ +++ AG+ + YG I IGYADG+ + Sbjct: 244 SLVSELVHVKQLEAGQDIGYGATYTTEDAQWIGTIPIGYADGWIREMQNF---------- 293 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 + IK PI+G+++MD + + L + G + + G +I ++A GT Sbjct: 294 --QVLIKSEFCPIVGRVSMDQITVRLPEELPL--GTKVTLIGRDGEKEITATEIADYRGT 349 Query: 353 TNYDLLVRIGTRYAKFYT 370 NY+++ + R + YT Sbjct: 350 INYEVVCLLSDRIPRDYT 367 >gi|323463920|gb|ADX76073.1| alanine racemase 1 [Staphylococcus pseudintermedius ED99] Length = 382 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 25/376 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +K++L A+ N++++ L N VVK NAYGLG +IA L G + F V + Sbjct: 7 RTTTMKVNLDAITENYYALTKLQPNKTMMPVVKANAYGLGSIQIAQHLSQLGAEFFCVAT 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSCGVSH 122 ++E ++LR++ + +I +L I P + + S + + Sbjct: 67 LDEAIELRMHGIKEKILILSSIPPDAINKAIQHRVAVTVPSRAWLEAATAEIDEDNEKTL 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG NRLG+ EA N + + + D + +Q ERF Sbjct: 127 WLHIKVDTGMNRLGVKDIEAYHDIINFIHAHENLVFEGAFSHFHSADEDNDSAHLQYERF 186 Query: 183 RTLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVT 237 +I + +S+G L RPGI+LYG + + V Sbjct: 187 EEIIESTEHPTYIHMQNSAGTLRFNPSLCNAFRPGIALYGYYPSAFIEKIATAQLAPAVQ 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ ++ + GE V YG D IA+ IGYADGY ++ G Sbjct: 247 LVTEVMEVKSLIKGETVGYGQTYTAPEDMTIALLPIGYADGYLRSMQ------------G 294 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 I I+G+++MD T + ++++G+ + + ++ +A T Sbjct: 295 ANVRIGTTECEIVGRVSMDRTAIRVP--ATVQMGEEVILIDDQAHTSQSVESLAAQQQTI 352 Query: 354 NYDLLVRIGTRYAKFY 369 NY++L IG R + Y Sbjct: 353 NYEVLCNIGRRVPRVY 368 >gi|167589682|ref|ZP_02382070.1| alanine racemase [Burkholderia ubonensis Bu] Length = 377 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 90/359 (25%), Positives = 154/359 (42%), Gaps = 21/359 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + +R AVVK NAYG G E+I P L + Sbjct: 3 RPIVAHIRPAAVRHNLEFIRRTVAPSRVWAVVKANAYGHGIERIYPGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E V++R + +L GI + + + + + V Sbjct: 61 LDEAVRVRALGWDKPVLLLEGIFEPADVELAEHHRLTVAVHCDAQLDLLIAAKPQRPIDI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + +++H A AD+ QL++F Sbjct: 121 QLKMNSGMNRLGYRPAAFRAAWERAAGAPSIGKITLMTHFANADEGE---IDWQLDQFDA 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEA 240 + G E S+++S+ +L P H RPG LYG + H P+ +T + Sbjct: 178 ATAGMPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLIAAMTLTS 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +II ++ E V YG + + I V A GYADGYP G Sbjct: 237 KIIGVQTLAPQETVGYGRRFAADQPMRIGVVACGYADGYPRHA-----------PTGTPI 285 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G + ++G+++MDM D+T + +G +++++G +K+DDVA ASGT Y+L+ Sbjct: 286 AVDGMLTRVVGRVSMDMLTVDLTPCPNAGIGSHVELWGDQVKVDDVAEASGTIGYELMC 344 >gi|255020460|ref|ZP_05292525.1| alanine racemase [Acidithiobacillus caldus ATCC 51756] gi|254970070|gb|EET27567.1| alanine racemase [Acidithiobacillus caldus ATCC 51756] Length = 365 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 157/373 (42%), Gaps = 22/373 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R I +AL +N A A+ A VK NAYG G AP L AGV+ F V S Sbjct: 3 RPVRACISASALAHNVAVARARMPGAKLMAAVKANAYGHGLAVCAPELARAGVEGFAVAS 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE +L +L G PG+ + I VI QL + + Sbjct: 63 MEEAEQLYDLALGPSACLLAGPFAPGEIPLAAARGHILVIHRAAQLAWLQEQR-WNRPLS 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLS-LIISHLACADDPSSHVNSVQLERF 182 ++ D+G +RLG + + ++SHLA +D P+ N+ Q+ F Sbjct: 122 IWIKFDSGMHRLGFAPSALGPVFEALAAVQSPLRILGLMSHLARSDTPNDPHNTRQIREF 181 Query: 183 RTLISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 R I + E SLA+S +L F RPG+ LYG + + ++ V+ Sbjct: 182 RAAIGQWGERTLGEHSLANSGAVLALGEARFPWMRPGLMLYGLSPFPGQTGRDLGLRPVL 241 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +A+II R+ GE + YG + + + V A GY DG+ L Sbjct: 242 SWQAQIIATRRLAPGEWLGYGAAYQAPHEQRVGVVACGYGDGFDRHLG-----------Q 290 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-KLDDVALASGTTNY 355 G +I LG+++MD+ D+ D + GD++ + G L+ +A GT Y Sbjct: 291 GAPVWIGSQRSQTLGRVSMDLLFVDLQD-SDAQEGDWVTLMGVGAEPLESLAERLGTIPY 349 Query: 356 DLLVRIGTRYAKF 368 +L RI R + Sbjct: 350 ELGTRIQARVPRV 362 >gi|256848377|ref|ZP_05553820.1| alanine racemase [Lactobacillus coleohominis 101-4-CHN] gi|256714975|gb|EEU29953.1| alanine racemase [Lactobacillus coleohominis 101-4-CHN] Length = 378 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 153/385 (39%), Gaps = 30/385 (7%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+S + +DL AL++N + A L + VVK +AYG G ++A L GV Sbjct: 1 MNSARLRNTNVVVDLGALRHNIRAQKAALPAGSHIFGVVKADAYGNGMTQVAHVLSEEGV 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG LR Q I VL + + + + SV L Y ++ Sbjct: 61 AGFCVALLDEGFTLRNAGLQETILVLGITPVQYAPLAAENGISLTVGSVDWLKEYQQVAQ 120 Query: 118 CGV---SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L +DTG R+G + I +H A D Sbjct: 121 TNHVRQPLKVHLGLDTGMGRIGFQDVTEFKQALQLVQTPEFEFEGIFTHFATVDSADKTY 180 Query: 175 NSVQLERFRTLIS--HYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTD---KINK 228 QL +++ ++ ++ +A+S+ L + R GISLYG ++ Sbjct: 181 FEHQLTKWKQFLAVVDHRPRYVHMANSATGLWHQQDIESNTVRMGISLYGCNPSGRELQP 240 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 S +Q V + ++K GE VSYG +D +A +GYADGY L+G Sbjct: 241 SFELQPVTSLITHATFVKKLHRGESVSYGATYTAQQDEWVATLPVGYADGYRRELTGY-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 + G + ILG+I MD M + + + G + G +I Sbjct: 299 ----------HVLVNGQVCDILGRICMDQMMIRLPHQMPV--GTEAVLLGRSGDQEITAT 346 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A GT NY++L G R A+ Y Sbjct: 347 DLADQLGTINYEVLTGFGDRLARKY 371 >gi|221069574|ref|ZP_03545679.1| alanine racemase [Comamonas testosteroni KF-1] gi|220714597|gb|EED69965.1| alanine racemase [Comamonas testosteroni KF-1] Length = 368 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 149/375 (39%), Gaps = 26/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + I A+++N + +A+ +V+K NAYG G E + L F + Sbjct: 3 RPITVTIHPEAVRHNLERVRQAVPDAKLWSVIKANAYGHGIENVFEGLRA--TDGFAMLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E ++R + I +L G+ ++ I I + + V H Sbjct: 61 LDEAQRVRQLGWRGPILLLEGVFELRDLEICSRLGIWHAVHCDEQIDWLAAHKTQVGHRV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++H + AD QL+ F Sbjct: 121 FLKMNSGMNRLGFTPERFRAAYARLNALPQVDEISFMTHFSDADVAHGI--DHQLKVFHE 178 Query: 185 LISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSHPMQT----VVTA 238 G + S++ +L G + RPGI LYG + +T Sbjct: 179 TTLDLPGERSISNSAATLLYGDESNVRCDWVRPGIVLYGSSPDFPAHDAAHWGLEPTMTL 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +RII I++ G+ V YG + + + V A GYADGYP G Sbjct: 239 SSRIIGIQELQPGDTVGYGSRFQCDAPLRLGVVACGYADGYPRVC-----------PTGT 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT 353 ++G LG+++MDM D++ +G + ++G + +D+VA A+GT Sbjct: 288 PVLVEGVRTRTLGRVSMDMMAVDLSPVPKARLGSEVTLWGRASNGAVLPIDEVAAAAGTL 347 Query: 354 NYDLLVRIGTRYAKF 368 Y+L+ + R K Sbjct: 348 GYELMCAVAPRVPKV 362 >gi|313803210|gb|EFS44406.1| alanine racemase [Propionibacterium acnes HL110PA2] gi|314963982|gb|EFT08082.1| alanine racemase [Propionibacterium acnes HL082PA1] gi|315081459|gb|EFT53435.1| alanine racemase [Propionibacterium acnes HL078PA1] Length = 375 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 148/373 (39%), Gaps = 24/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLRAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185 VD+G R+GL + T + + ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTA 189 Query: 186 ISHYK----GIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 ++ + ++SG +LG + + R GI YG + + + ++ Sbjct: 190 VTQTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I G + PI+G+I MD M D+ S+ VGD + + G + DD+A GT +Y Sbjct: 299 VLIGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAKF 368 ++ I R + Sbjct: 359 EITCAISKRVDRR 371 >gi|194334745|ref|YP_002016605.1| alanine racemase [Prosthecochloris aestuarii DSM 271] gi|194312563|gb|ACF46958.1| alanine racemase [Prosthecochloris aestuarii DSM 271] Length = 386 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 99/372 (26%), Positives = 149/372 (40%), Gaps = 25/372 (6%) Query: 11 IDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L N + L G + VVK NAYG IA L GV DF V +++E + Sbjct: 26 ISSAHLACNVKKIRDLIGKERKIMGVVKANAYGHDAPYIAGCLEKLGVSDFGVANIDEAL 85 Query: 70 KLRL---YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYA 125 +LR +RI N+ ++ + + Sbjct: 86 QLRQTKAICDNSRILAFCSPLDSHIPFYLRHNVTMTVTDFRTMHAAAAAAKAANRLLNVH 145 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++VDTG RLGL ++A++ + QL + +H A + S Q + FR L Sbjct: 146 VKVDTGMGRLGLPPEKAMELLSSIEENDHLQLEGVYTHFAQS-TISDDFTRRQTDCFRHL 204 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTA 238 S ++ + A S I+ N H + RPGI LYG + + V+ Sbjct: 205 CSEFEHRFRRSVIKHAAGSGAIICQKNAHLDMVRPGIMLYGYPPDSTTTIGPELKPVMQF 264 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +A+II I++ G +SY IA + GYADGY LS S Sbjct: 265 QAKIIFIKEVAPGTSISYNRTWIAPEKRTIATISAGYADGYHRRLSNRSS---------- 314 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDL 357 I G P G +TMD TM D+ ++ VGD +FG D+A +GT +Y+L Sbjct: 315 -VTINGRSYPQAGTVTMDQTMVDLGNASRAAVGDTAVLFGWDGPSAADLADMAGTISYEL 373 Query: 358 LVRIGTRYAKFY 369 L + R + + Sbjct: 374 LCAVSARVTRVF 385 >gi|323357274|ref|YP_004223670.1| alanine racemase [Microbacterium testaceum StLB037] gi|323273645|dbj|BAJ73790.1| alanine racemase [Microbacterium testaceum StLB037] Length = 373 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 143/370 (38%), Gaps = 25/370 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID+ A+ N L+G AVVK + YG G + A A G V+ ++E + Sbjct: 13 IDVDAITENVRHFRRLTG-VEVIAVVKADGYGHGAHRAAQAALRGGATRIGVSDIDEALA 71 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR A +F ++ IS + QL + L+++T Sbjct: 72 LRRAGIHAPLFAWLHAPGASFVEAVRHDIELGISDIDQLLRAGESAQGDRPAAVHLKIET 131 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI--SH 188 G +R G++ + + + ++ + + S + L RF + + Sbjct: 132 GLSRNGIAPADWRVVFAEAARLERIGRLRVVGLFSHLSNASEEDDRAALARFEEGVVLAA 191 Query: 189 YKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242 G+ L + P R GI +YG + + ++ +T + Sbjct: 192 SVGLNPPLRHIAATHAAIALPEARLTGVRIGIGIYGISPFHDRTSADLGLRPAMTLRGAV 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 +R+ AG VSYG + RD+ +A+ +GYADG P S G I Sbjct: 252 SAVRRVPAGTGVSYGYVYRTERDTTLALVPLGYADGVPRQASDR-----------GPVVI 300 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLL 358 G P+ G++ MD + D+ D + VGD + +FG D A+ T +Y+++ Sbjct: 301 GGRRFPVAGRVAMDQFVVDVGDHP-VSVGDEVVLFGDPTLGVPAARDWGDAADTIDYEIV 359 Query: 359 VRIGTRYAKF 368 R+G R + Sbjct: 360 TRVGPRVPRR 369 >gi|261318416|ref|ZP_05957613.1| alanine racemase [Brucella pinnipedialis B2/94] gi|261297639|gb|EEY01136.1| alanine racemase [Brucella pinnipedialis B2/94] Length = 353 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 121/352 (34%), Positives = 179/352 (50%), Gaps = 28/352 (7%) Query: 35 VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT-PQARIFVLYGIHPGQEKI 93 +VK +AYGLG ++APA Y AG +DFFV + E V L+ + P A ++VL G+ PG E Sbjct: 1 MVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEAVALKPFLKPDATLYVLNGLQPGTEAA 60 Query: 94 IFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 ++PV++S+ Q+ ++ L G P LQ DTG +RLGLS +E N Sbjct: 61 CAREGILPVLNSLEQVENWAALATRLGKKLPALLQFDTGMSRLGLSAKEFDRLLENVTLL 120 Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212 + ISHLA D+P + N+ QL + L++ + A+LA+S G LG Y+F L Sbjct: 121 SRIDIKFAISHLANGDEPGNAANARQLAKMTALLARLPKLPAALANSGGTFLGKTYYFDL 180 Query: 213 TRPGISLYGGTDKINKS-------------HPMQTVVTAEARIILIRKALAGELVSYGGQ 259 RPGI+LYG + H + V+T AR+I +R G V YGG Sbjct: 181 ARPGIALYGIDPERQHDFSDKVAHENKKPKHSILPVLTLSARVIQVRDVDKGATVGYGGT 240 Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 IA A+GYADG +LS G F +PI+G+++MD Sbjct: 241 YVANGPMRIATIAVGYADGLFRSLSN-----------KGAAFFGDTRLPIIGRVSMDSIT 289 Query: 320 FDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D+T +++G +++ GP +L+DVA T Y++L +G RYA+ Y Sbjct: 290 LDVTSLPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNRYARVY 341 >gi|91786104|ref|YP_547056.1| alanine racemase [Polaromonas sp. JS666] gi|123165554|sp|Q12H34|ALR_POLSJ RecName: Full=Alanine racemase gi|91695329|gb|ABE42158.1| alanine racemase [Polaromonas sp. JS666] Length = 364 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 157/375 (41%), Gaps = 30/375 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL +N + + +AR AVVK NAYG G E + L + F + Sbjct: 3 RPILATIHRPALAHNLARARSAAPDARVWAVVKANAYGHGIEHVFDGLRS--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E +LR + I +L G ++ +L VI Q+ + + V H Sbjct: 61 LAEARRLRALDWRGPILLLEGCFEARDLELCSRLSLWHVIHCNEQIDMLAAHKTQ-VPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLGL + +++H + AD P + QL F Sbjct: 120 VFLKMNSGMNRLGLRPERFRAAWTRLNALPQVDEISLMTHFSDADGPKGI--AAQLRAFD 177 Query: 184 TLISHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTDKINK----SHPMQTVV 236 + G E SL++S+G+L + RPGI +YG + +Q + Sbjct: 178 AVTHDLPG-ERSLSNSAGVLRHGDELAARSDWVRPGIVVYGSAPDFPEHSAADWGLQPTM 236 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +RII +++ AG+ V YG I V A GYADGYP S Sbjct: 237 TLSSRIIGVQELAAGDTVGYGSSFTADGPLRIGVVACGYADGYPRHCS-----------T 285 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASG 351 G + G ++G+++MDM D+T +G + ++G + +D+VA +G Sbjct: 286 GTPVLVNGVRTRMVGRVSMDMITVDLTPVPDAGMGAEVTLWGRSSGGAVLPIDEVAQTAG 345 Query: 352 TTNYDLLVRIGTRYA 366 T Y+L+ + R Sbjct: 346 TVGYELMCAVAPRVP 360 >gi|108803647|ref|YP_643584.1| alanine racemase [Rubrobacter xylanophilus DSM 9941] gi|108764890|gb|ABG03772.1| alanine racemase [Rubrobacter xylanophilus DSM 9941] Length = 365 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 156/380 (41%), Gaps = 32/380 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + ++DL A+++N ++ S R AVVK +AYG G +A A G Sbjct: 1 MEVPGRVWAEVDLGAVRHNVRTLRRRSRAPRLMAVVKADAYGHGAVPVARAALAGGADSL 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + EG +LR +A + V + P + L SVP + + G+ Sbjct: 61 AVATAGEGAELRRAGIRAPVLVFGDLTPEGLRAAARERLAVSAHSVPSARRIA---ASGL 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+VDTG NR GL E + + +HLACAD QL Sbjct: 118 DLEVHLKVDTGMNRWGLEPGE----VGAALKALGRTPDGVYTHLACADSDP-EATGRQLA 172 Query: 181 RFRTLISHYK--GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 F ++++ + G A A+S+G L P H+ RPGI+LYG + P + Sbjct: 173 LFDSVLAAHPFGGALAHAANSAGTLWHPGSHYGCVRPGIALYGLHPAGDAGDPAAEGLRP 232 Query: 239 ----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ + +R+ GE VSYG + L A +GYADGY LSG Sbjct: 233 ALALKSYVAAVRRLEPGEGVSYGLTFRAPEPMLAATVPVGYADGYRRALSGRAEALIRGR 292 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G ++MD +F + VGD + + G ++ +++A + Sbjct: 293 RRPLLGR-----------VSMDACVF--AADREVRVGDEVVLLGEQGGGAVRAEELAARA 339 Query: 351 GTTNYDLLVRIGT-RYAKFY 369 GT NY++ + R + Y Sbjct: 340 GTINYEITTGLNPRRVERSY 359 >gi|325684688|gb|EGD26842.1| alanine racemase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 376 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 150/387 (38%), Gaps = 32/387 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + N L I+L A+K N L + VVK NAYG G ++AP + AG Sbjct: 1 MITAVNRPAALHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG++LR I VL + + ++ +SS+ L K++ Sbjct: 61 DGFCVAMLDEGLELRRAQIVKPILVLGLQPAEEAALAAVNDISLPVSSLDWLKKAEKVLR 120 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVN 175 G+ L +D+G R+G S E + + + +H A AD + Sbjct: 121 KEGLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------I 226 Q++RF+ + S + +++ IL + + R GI LYG + Sbjct: 181 DYQVKRFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDL 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ ++ + + +++ G V YG D I +GYADG+ G Sbjct: 241 EPAFALKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 K + PI+G++ MD M + + G +++ D Sbjct: 301 ------------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 L A T +Y++ + R + Y Sbjct: 347 LRRAADWLDTIHYEVACQFNDRLDRIY 373 >gi|313123077|ref|YP_004033336.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279640|gb|ADQ60359.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 376 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 150/387 (38%), Gaps = 32/387 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + N L I+L A+K N L + VVK NAYG G ++AP + AG Sbjct: 1 MITAVNRPAALHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG++LR I VL + + ++ +SS+ L K++ Sbjct: 61 DGFCVAMLDEGLELRRAQIVKPILVLGLQPAEEAALAAVNDISLPVSSLDWLKKAEKVLR 120 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVN 175 G+ L +D+G R+G S E + + + +H A AD + Sbjct: 121 KEGLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------I 226 Q++RF+ + S + +++ IL + + R GI LYG + Sbjct: 181 DYQVKRFKHMESMLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDL 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ ++ + + +++ G V YG D I +GYADG+ G Sbjct: 241 EPAFALKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 K + PI+G++ MD M + + G +++ D Sbjct: 301 ------------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 L A T +Y++ + R + Y Sbjct: 347 LRRAADWLDTIHYEVACQFNDRLDRIY 373 >gi|256826606|ref|YP_003150565.1| alanine racemase [Cryptobacterium curtum DSM 15641] gi|256582749|gb|ACU93883.1| alanine racemase [Cryptobacterium curtum DSM 15641] Length = 421 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 169/386 (43%), Gaps = 31/386 (8%) Query: 4 NEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID +A+++N H L N R AVVK +AYG G +++ N+G V Sbjct: 46 RRWAWVEIDRSAIRHNLHEAKRRLQPNCRLMAVVKADAYGHGAVEVSRTALNSGADALAV 105 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVS 121 +V+EG+ LR +A I +L ++ + ++P + + L + + + Sbjct: 106 ATVDEGIALREAGLRAPILLLSEPPQAAIPLLLEYKIMPSVYRAEFALAYGEIADAHHLK 165 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 P+ L V+TG NR+G+ ++ L+F + + +H A AD P + +Q++R Sbjct: 166 APFHLAVNTGMNRIGVHAEDILEFERQISFHRALEQEGTFTHFATADCPENLDFRIQMKR 225 Query: 182 FRTLISHYK--GIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKS--HPMQT 234 F I + GI+ + ++ L P HF + R GI++YG ++ Sbjct: 226 FTEAIEALRLAGIDPGIVHAANSAALLRYPESHFDMARIGIAMYGFHPCEETRDVVDLKP 285 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ARI IR GE VSYG + I +GYADG+ LSG + Sbjct: 286 AMSVYARITDIRNVSVGEGVSYGLNYRSPGSVRICTIPLGYADGFNRLLSGKVN------ 339 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDIT-------DSLSIEVGDYIQIFGPD----IKL 343 + G +G I MD MF++ L+ ++GD + + G + Sbjct: 340 -----VILDGQYCRQVGNICMDQCMFEVDMRTYGTHPRLNPQLGDIVTVVGNQGDAITTI 394 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 ++A + T +++ + R + Y Sbjct: 395 TEMAYLANTIEHEVAIGFAWRLPRLY 420 >gi|225012399|ref|ZP_03702835.1| alanine racemase [Flavobacteria bacterium MS024-2A] gi|225003376|gb|EEG41350.1| alanine racemase [Flavobacteria bacterium MS024-2A] Length = 362 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 151/371 (40%), Gaps = 20/371 (5%) Query: 6 FLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L + L+ + +N++ + ++ + VVK NAYG A L GV V Sbjct: 1 MNTLTLSLSNIDHNYNCIREQINATTQIIGVVKANAYGSSSIHFASRLVELGVDYLAVAY 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--SH 122 EEG +LR + I V Y + D L P + + L + K++ + Sbjct: 61 TEEGQQLRSQGVKIPIMVFYPQLDA-LDTLLDACLEPCLYNETILEGFKKILLEKKISHY 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P ++ +TG NRLG + ++ N S+ A S + Q+E F Sbjct: 120 PVHIKYNTGLNRLGFTPDQSDWVLEQMKNNCFQLESVYSHLAASEAKRPSALCKSQIELF 179 Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 L + + + L +SSG+ P + + + R GI+L+G + + ++ + Sbjct: 180 EILKIKHSSVSNQPPKFHLLNSSGVFNYPEHQYDMVRCGIALHGFANHPDWDAHLKPICV 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 E+ I I + G V Y + +++ IA +G+ADG Sbjct: 240 LESSITQIHQVKKGNFVGYDHGWQAPQNTQIATLPLGHADGIGRHFG----------HHK 289 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 G I G PI+G + MD+ M D+T E GD ++ FG AL + +Y+L Sbjct: 290 GSVMINGKKAPIVGNVCMDLLMVDVTSI-DCEEGDKVKFFGELNTASTFALQGNSISYEL 348 Query: 358 LVRIGTRYAKF 368 + +G+R + Sbjct: 349 ITGLGSRIKRI 359 >gi|259908277|ref|YP_002648633.1| Alanine racemase, catabolic [Erwinia pyrifoliae Ep1/96] gi|224963899|emb|CAX55402.1| Alanine racemase, catabolic [Erwinia pyrifoliae Ep1/96] gi|283478209|emb|CAY74125.1| dadX [Erwinia pyrifoliae DSM 12163] Length = 356 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 155/370 (41%), Gaps = 21/370 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + I+ AL+ N +G AR +VVK NAYG G + + +L F + Sbjct: 2 SRPIVATINRAALRQNLAIARYTAGGARLWSVVKANAYGHGIDHVWQSLNE--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G + I D + Sbjct: 60 NLEEAILLRERGWKKPILLLEGFFHPDDLQILDRYRLTTSVHSNWQINALAQAKLSAPID 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + + +++H A A+ + L+R Sbjct: 120 IYLKMNSGMNRLGFQPERVHGVWQKLRSLENVGELTLMAHFADAESAEG--VAEPLKRIE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAE 239 + SLA+S+ L P H+ RPGI LYG + +Q V+T Sbjct: 178 Q-AAEGLECPRSLANSAATLWHPQTHYDWVRPGIILYGASPSGQWQDIAGSGLQPVMTLT 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I +++ AG V YG + + I V A GYADGYP G Sbjct: 237 SEVIAVQQLAAGSGVGYGSRYRANCSQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G I+G ++MDM D+T L +G ++++G ++K+DDVA ASGT Y+L+ Sbjct: 286 IRVDGEKTQIVGAVSMDMITVDLTPCLQAGIGSQVELWGDNVKIDDVASASGTVGYELMC 345 Query: 360 RIGTRYA-KF 368 + R + Sbjct: 346 ALAPRVPVRV 355 >gi|302877856|ref|YP_003846420.1| alanine racemase [Gallionella capsiferriformans ES-2] gi|302580645|gb|ADL54656.1| alanine racemase [Gallionella capsiferriformans ES-2] Length = 353 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 20/365 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ ID AL+NN H + ++R AV+K + YG G ++A AL + F + Sbjct: 3 RPIQALIDQNALENNLHVARR-AASSRIMAVIKADGYGHGLLRVAEALAA--AEGFALLD 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +++ V+LR + I +L G + + + + + Sbjct: 60 IQDAVRLREAGYRQTILLLEGFFDAADLALIAAYELTTVIHSNWQIALLDAYPGRGTLDV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G +RLG S + + + ++SH + AD+P S+QL Sbjct: 120 WLKVNSGMHRLGFSPEGVNAAMKSLRAHAAVREITLMSHFSHADEPRG--VSLQLALINE 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 I+ + SLA+S+ +L P H RPG+ LYG + + + ++ V+T +R Sbjct: 178 -IASEYRVARSLANSAALLRYPATHGDWVRPGVMLYGASPFADTSAQQLGLKPVMTLSSR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II I+ AG+ V Y G + R I V A GYADGYP G Sbjct: 237 IIAIQNLQAGDEVGYAGVFRADRTMRIGVVACGYADGYPRHAPN-----------GTPVL 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G +LG+I+MDM D+T +G + ++G + ++ VA A+GT +Y+L+ + Sbjct: 286 VDGRKTQLLGRISMDMLCVDLTALPDSGMGAQVTLWGQGLPVETVAAAAGTISYELMCGL 345 Query: 362 GTRYA 366 R Sbjct: 346 TARVP 350 >gi|254419455|ref|ZP_05033179.1| alanine racemase [Brevundimonas sp. BAL3] gi|196185632|gb|EDX80608.1| alanine racemase [Brevundimonas sp. BAL3] Length = 346 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 177/362 (48%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL AL N+H++ A++G VVK +AYGLG E A L G + FFV EG Sbjct: 7 LSVDLNALARNFHTLEAVTG-VPVHPVVKADAYGLGAEACAKRLMAEGARTFFVARAGEG 65 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 LR P+ ++VL G H ++ +L PV++ Q+ +++ LQ Sbjct: 66 AALRTALGPEPVLYVLDGCHGEAAGLLKAADLRPVLNQPAQMKAWAEAGGGA----CGLQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG ++A + SL++SHLAC D+P +N Q +RF ++ Sbjct: 122 IDTGLNRLGFRPEDAPEVFDGL--------SLVMSHLACGDEPDQPMNRRQRDRFAGMVE 173 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 Y G+ S A+S G LGP++ F RPG+ LYGG + + V A ++L+R Sbjct: 174 RYPGVTRSFANSGGCFLGPDFAFDAVRPGVCLYGGGPEGRPDERIAPVAALTAEVLLVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y R AV A GYADG G ++ G Sbjct: 234 VRTGESVGYSRGFVAERPMRAAVVAAGYADGVLRAYGPR-----------GAVWVAGETR 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P+LG+I+MD+ D+T + VGD +++FG +D A A+GT +Y+LL + R + Sbjct: 283 PLLGRISMDVCTVDVTGL-EVAVGDRVELFGAHRPIDAAAAAAGTISYELLTAVTVRVPR 341 Query: 368 FY 369 Y Sbjct: 342 AY 343 >gi|330000338|ref|ZP_08303687.1| alanine racemase [Klebsiella sp. MS 92-3] gi|328538021|gb|EGF64193.1| alanine racemase [Klebsiella sp. MS 92-3] Length = 333 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 147/344 (42%), Gaps = 20/344 (5%) Query: 27 SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI 86 + +R AVVK NAYG G ++ AL F + ++EE + LR + I +L G Sbjct: 2 APGSRLWAVVKANAYGHGVARVWSALSA--ADGFALLNLEEAILLREQGWKGPILLLEGF 59 Query: 87 HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 E + D + + L+V++G NRLG + Sbjct: 60 FHADELAVLDQYRLTTSVHSNWQIKALQQAKLRAPLDIYLKVNSGMNRLGFMPERVHTVW 119 Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGP 206 ++SH A A++P V ++ + SLA+S+ L P Sbjct: 120 QQLRAISNVGEMTLMSHFAEAENPQGIVEPMRRI---EQAAEGLDCPRSLANSAATLWHP 176 Query: 207 NYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262 HF RPGI LYG + + ++ V+T + II ++ GE + YGG + Sbjct: 177 EAHFDWVRPGIVLYGASPSGQWQDIANTGLKPVMTLRSEIIGVQNLRPGEAIGYGGLYRT 236 Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322 T++ I + A GYADGYP G + G +G+++MDM D+ Sbjct: 237 TQEQRIGIVACGYADGYPR-----------VAPSGTPVLVDGVRTTTVGRVSMDMLAVDL 285 Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 T +G ++++G +IK+DDVA +SGT Y+L+ + R Sbjct: 286 TPCPQAGIGAPVELWGKEIKIDDVAASSGTVGYELMCALAPRVP 329 >gi|160903082|ref|YP_001568663.1| alanine racemase [Petrotoga mobilis SJ95] gi|160360726|gb|ABX32340.1| alanine racemase [Petrotoga mobilis SJ95] Length = 374 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 153/372 (41%), Gaps = 28/372 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I++ N + + + A V+K NAYG G +A ++ G V +EE ++ Sbjct: 10 INIDKYLENLNYIQNQT-KAHIIPVLKANAYGHGMLPLAMQVFKEGYSMLAVAYLEEALE 68 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---SHPYALQ 127 + I + P K + + + G + + Sbjct: 69 ILNRGIHLPILIFNYFSPDDFKELLEFAHFLRPTITSSTFLEKVCDILGKDVDKFKFHIN 128 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG NR+G+ ++ ++ Q+ + SH A AD+ VQ E+++ L+ Sbjct: 129 VDTGINRIGIKEEKLPQLIKLIKDR-NIQIEGVYSHFANADE-KDDFTRVQFEKYKGLLD 186 Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-QTVVTAEAR 241 + G + +++S+ L P + RPGI+ YG + ++ ++ Sbjct: 187 YIIGSGIDVEKKHISNSAAALFFPEFALDYVRPGIATYGLQPSTTYKIDQLKPILELKSI 246 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + I+ + + YG ++ + A+ IGYADGY LS G+ Sbjct: 247 VANIQNLQPNDTIGYGRTYEVQKRMKTAIVPIGYADGYFRALSN-----------KGEVL 295 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDL 357 I G ILG+++MD + D+TD ++ +GD + I G I ++VA + T NY++ Sbjct: 296 INGKRSKILGRVSMDQIVVDVTD-NNVSLGDEVVIIGRQKYDQITAEEVAENASTINYEV 354 Query: 358 LVRIGTRYAKFY 369 RI R + Y Sbjct: 355 TSRIAQRVRRIY 366 >gi|326381872|ref|ZP_08203565.1| alanine racemase [Gordonia neofelifaecis NRRL B-59395] gi|326199298|gb|EGD56479.1| alanine racemase [Gordonia neofelifaecis NRRL B-59395] Length = 386 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 150/388 (38%), Gaps = 31/388 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S+ L +DL A+ +N + SG A AVVK + Y G + AG Sbjct: 1 MDSHANLYATVDLGAIAHNVGVLRDRSG-ADVIAVVKADGYAHGAVPVGRTALRAGAIAL 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119 V + E LR + + +SS Q G Sbjct: 60 GVAQIREARALRAAGLDGHLIAWLHTTDADFAGAITDGIDIAVSSPRQLAAVVQAARGLG 119 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNS 176 + ++++DTG R G++ E + HLA D P +NS Sbjct: 120 RTATVSVKLDTGLARSGVAPDEWDATAEAIAAASAEGAISLHGAMCHLAFGDVPEHPLNS 179 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SH 230 +Q ER ++ +A+S L P+ RPG+S+YG + Sbjct: 180 LQGERLDEAVADLTRRGVTPELVHIANSPAALTRPDLARDAVRPGLSVYGYSPVPEIGDF 239 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + +T E RI LI++ AG+ VSY R++ + V GYADG P LSG Sbjct: 240 GLIPAMTLETRISLIKRIPAGQGVSYNHTWVAPRNTFLGVVPAGYADGVPRGLSGRLG-- 297 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPD--------I 341 + G + P +G+I MD + D+ D + GD +FGP Sbjct: 298 ---------VHVNGRVFPSVGRICMDQLVIDLGPDGGGVAEGDRAILFGPACASAGEPVP 348 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 D A A+GT +Y+++ R+G+R + Y Sbjct: 349 TATDWADATGTIDYEIISRVGSRAVRRY 376 >gi|104773514|ref|YP_618494.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123251998|sp|Q1GBP6|ALR_LACDA RecName: Full=Alanine racemase gi|103422595|emb|CAI97198.1| Alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 376 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 32/387 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + N L I+L A+K N A L + VVK NAYG G ++AP + AG Sbjct: 1 MITAVNRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG++LR I VL + + ++ +SS+ L K++ Sbjct: 61 DGFCVAMLDEGLELRRAQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLR 120 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVN 175 G+ L +D+G R+G S E + + + +H A AD + Sbjct: 121 KEGLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------I 226 Q++RF+ + S + +++ IL + + R GI LYG + Sbjct: 181 DYQVKRFKHMESLLTVKPKWIHVDNTAAILFDKDVASDIVRFGIGLYGLNPSSAPGSRDL 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ ++ + + +++ G V YG D I +GYADG+ G Sbjct: 241 EPAFALKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 K + PI+G++ MD M + + G +++ D Sbjct: 301 ------------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 L A T +Y++ + R + Y Sbjct: 347 LRRAADWLDTIHYEVACQFNDRLDRIY 373 >gi|313792676|gb|EFS40762.1| alanine racemase [Propionibacterium acnes HL110PA1] Length = 375 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 147/373 (39%), Gaps = 24/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL A+ N +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLRAIAANLAVARKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185 VD+G R+GL + T + + ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTA 189 Query: 186 ISHYK----GIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 ++ + ++SG +LG + + R GI YG + + + ++ Sbjct: 190 VTQTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I G + PI+G+I MD M D+ S+ VGD + + G + DD+A GT +Y Sbjct: 299 VLIGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAKF 368 ++ I R + Sbjct: 359 EITCAISKRVDRR 371 >gi|260437330|ref|ZP_05791146.1| alanine racemase [Butyrivibrio crossotus DSM 2876] gi|292810242|gb|EFF69447.1| alanine racemase [Butyrivibrio crossotus DSM 2876] Length = 372 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 157/379 (41%), Gaps = 38/379 (10%) Query: 11 IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L ++ N G + + A+VK NAYG G ++A A+ + V F V +V E + Sbjct: 11 IHLDSIYKNIEEAKKRVGSDTKIMAIVKANAYGHGAVEVAGAIKDK-VYGFAVATVREAL 69 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVSHPYALQV 128 LR I VL + + + + N+I +++ G++ +++ Sbjct: 70 TLRESGVDNPILVLGYVCKAEYESVIRNNIIFAMLTKDMAKDISECAARIGITAKCHIKI 129 Query: 129 DTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +TG NR+G + +EA+D + I H A AD Q E F +IS Sbjct: 130 NTGMNRIGFPVNEEAIDDIAELTGYEGLDCEGIFMHFATADSADKSYAKHQFELFMDVIS 189 Query: 188 H-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEA 240 + A+S+ I+ P Y + R GI LYG ++ S + + Sbjct: 190 KLEKRGIQFKIRHCANSAAIIDLPEYKLDMVREGIILYGLKPSDEVDASMKYYPALELKT 249 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I +++ AGE +SYG R IA AIGYADGYP +LS G Sbjct: 250 HVIFVKELGAGESISYGRTFVTDRPMRIATVAIGYADGYPRSLSN-----------KGYV 298 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSI----------EVGDYIQIFGPDIKLDDVALAS 350 I G ++G++ MD M D+TD + + G +I ++V S Sbjct: 299 LIHGKKAKVVGRVCMDQMMIDVTDIPDVNVEDVVTVVGKDGSE------EITFEEVGELS 352 Query: 351 GTTNYDLLVRIGTRYAKFY 369 G NY+ + I R + Y Sbjct: 353 GRFNYEFVCDISERVERKY 371 >gi|126665189|ref|ZP_01736172.1| alanine racemase [Marinobacter sp. ELB17] gi|126630559|gb|EBA01174.1| alanine racemase [Marinobacter sp. ELB17] Length = 359 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID AL++N+ SG + AV+K + YG A V F V +EE + Sbjct: 9 IDSKALQHNYQVACQRSGQSSAMAVIKADGYGH-GIAGVAGALAAVVPKFAVACIEEAIA 67 Query: 71 LRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +R Q + + N PV+ Q L+ + L+V Sbjct: 68 IRNAGVGQQPVALLQGVHSEQDLATCIEHNFEPVLHCDDQ---LQWLVQAPAAPRIWLKV 124 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERFRTLIS 187 +TG NRLG +E + +L + ++H ACADD S + Q ERF + Sbjct: 125 NTGMNRLGFHAEELAQVMATLAHHQLTPKVIGFVTHFACADDKRSTMTQQQTERFEKATA 184 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIIL 244 + ++ S+A+S+ + F +RPGI LYG + + +++V+T +A +I Sbjct: 185 PWPELQLSVANSAALFRPGQKLFGWSRPGIMLYGASPIVGTSAAELGLKSVMTLQAPLIS 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R G+ V YG + + + + A+GY DGYP G I G Sbjct: 245 TRLLQPGDTVGYGADWVACKPTRMGIVALGYGDGYPRHAG-----------TGTPAAIHG 293 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + ++G+++MDM D++ + + GD ++++G + +DDVA +GT Y+LL + R Sbjct: 294 QRIQLIGRVSMDMLAVDLSAAPAARNGDPVELWGATVPVDDVAGHAGTIGYELLTGVTAR 353 Query: 365 YAKF 368 + Sbjct: 354 VPRR 357 >gi|163732015|ref|ZP_02139461.1| alanine racemase [Roseobacter litoralis Och 149] gi|161394313|gb|EDQ18636.1| alanine racemase [Roseobacter litoralis Och 149] Length = 344 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 182/363 (50%), Gaps = 26/363 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL+AL NW ++NA S ++ TAAVVK NAYGLG A L AG + FFV EEG Sbjct: 6 LTIDLSALAANWRNLNARS-DSETAAVVKANAYGLGLRTAASVLAQAGARHFFVAVAEEG 64 Query: 69 VKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 LR V G G +I D L P+I+S+ Q + + H + +Q Sbjct: 65 AALREVLGTGPQISVFSGHMEGDTPLIRDAGLTPMINSIDQ---LIRHVEALPDHDFGIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG+ E + + SL++SHLACAD+PS +N QL+ F + Sbjct: 122 LDTGMNRLGMEDAEWRSVREVATQR---PPSLVMSHLACADEPSHQMNRQQLDCFIEMT- 177 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 H SLA++ G+L+G +YHF LTRPGI LYGG ++ VV + +I +R Sbjct: 178 HDISAPRSLAATGGLLMGSDYHFDLTRPGIGLYGGLPFVDA----LPVVQLDVPVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y + IA + GYADG + + H+ V V Sbjct: 234 VHPGETVGYANTWTAAAPARIATISAGYADGLIRAMGAKANLHAGDVA-----------V 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+++MD+ D+T + +Q+ G +D VA + T Y++L +G RY + Sbjct: 283 PVVGRVSMDLIGVDVTALSADPE--SLQLIGRHQSVDTVADFADTIGYEILTSLGERYKR 340 Query: 368 FYT 370 YT Sbjct: 341 VYT 343 >gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] Length = 824 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 145/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ N + + + + ++K NAYG G +IA L + V V +E Sbjct: 465 LEVNLNAVVKNLNWYRSFMKPETKLVCMIKANAYGAGSVEIAKTLQDHRVDYLAVAVADE 524 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV LR + I ++ K +FD L P + S L K P Sbjct: 525 GVTLRRNGITSNIMIMNPEMTA-FKTMFDYELEPEVYSFRLLEALIKAAEKEGITDFPVH 583 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLA-CADDPSSHVNSVQLERFR 183 +++DTG +RLG + ++ + SH D ++ Q F Sbjct: 584 IKLDTGMHRLGFDPINDMDKLIDRLKHQNAVIPRSVFSHFVGSDSDDFDDFSANQFALFD 643 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +S+GI P + R G+ LYG + N+ + T Sbjct: 644 AGSKKLQAAFDHKILRHIDNSAGIEHFPERQLDMCRLGLGLYGINSRNNEIINNVS--TL 701 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ +R G+ V Y + + DS+IA IGYADG L Sbjct: 702 KTTILQMRHIPVGDTVGYSRKGTIEHDSVIAAIPIGYADGLNRHLGNRHC---------- 751 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG + + ++ T Y++L Sbjct: 752 YCLVNGQKAEYVGNICMDVAMIDVTGI-DCKEGDTVEIFGDHLPVTVLSDVLDTIPYEVL 810 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 811 TNISDRVKRIY 821 >gi|313771042|gb|EFS37008.1| alanine racemase [Propionibacterium acnes HL074PA1] Length = 375 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 150/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V + E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATGAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTRTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|320354045|ref|YP_004195384.1| alanine racemase [Desulfobulbus propionicus DSM 2032] gi|320122547|gb|ADW18093.1| alanine racemase [Desulfobulbus propionicus DSM 2032] Length = 374 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 155/376 (41%), Gaps = 27/376 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+++ +AL +N+ + A +VK + YG G A G F V Sbjct: 2 RSLNRVEVSRSALIHNFGICRQWADGAAIMPLVKADGYGHGMIDCARVFAEQGAAAFGVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 EGV+LR I VL G+ P + + +L PV+ + S+L Sbjct: 62 EAIEGVRLRAAGITQPILVLAGVIPQTLPTMVEADLTPVVVDAAIVPELSRLAGLQRREI 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D G R G+ ++ +D +L +++H C+D+P S ++ L F Sbjct: 122 GVHVKLDAGMGRQGVLPEDFVDLVRTVRGAPHLRLDGVMAHFPCSDEPQSANSAQVLRTF 181 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN------KSHP 231 + G LA+S G+ + RPGI+LYG Sbjct: 182 TATTASLAALTGGGCCLHLANSGGLFYVAGARLDMVRPGIALYGYYPDGETGRAAAAPPL 241 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + RII +R+ AG + Y +R S IAV +GY DGY LS Sbjct: 242 LRPAMRFATRIIQVRRVPAGSGLGYSHLFTTSRPSTIAVLPVGYDDGYLRKLSNR----- 296 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + I G VP +G+I+M++T+ D+T ++VGD + G I D++A Sbjct: 297 ------AQVLIHGRRVPTVGRISMNLTLVDVTGIDGVQVGDEAVLLGRQGEETITADEIA 350 Query: 348 LASGTTNYDLLVRIGT 363 T +Y++L G Sbjct: 351 AWMETISYEVLCLFGK 366 >gi|50083405|ref|YP_044915.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter sp. ADP1] gi|49529381|emb|CAG67093.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter sp. ADP1] Length = 365 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 145/374 (38%), Gaps = 28/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I L AL +N + A + ++ AVVK NAYG G E++ A F + Sbjct: 3 RPIQAVIHLEALAHNLKIVRASAPESQVFAVVKANAYGHGIERVYQAFKQ--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE +LR I +L GI P L + Q+ + Sbjct: 61 IEEAKRLRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTVHHDVQIDWIEGH-PEDAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG + + + H + AD + Q + Sbjct: 120 IFLKMNSGMNRLGFKPVQYRHAWQRLNALSQVRHLTHMMHFSDADGERFGESGITYQHDL 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F I G S+++S+ IL P H + R GI LYG + ++ ++ Sbjct: 180 FEDTIRDLPG-PKSVSNSAAILRHP-LHSDVVRGGIMLYGSSPDYPTHGLHDWSLKPTMS 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II I+ E V YG + I + A GYADGY G Sbjct: 238 LRSEIIAIQMLEPNESVGYGSSFVADQPLRIGIVACGYADGYQRI-----------SPTG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G +G+++MDM D++ +G + ++G + +DDVA ASGT Sbjct: 287 TPVLVDGIETRTIGRVSMDMLAVDLSAVPKARIGSEVVLWGYSSTGVILPIDDVAAASGT 346 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 VGYELMCAVTARVP 360 >gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485] gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485] Length = 811 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 163/375 (43%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DLTA+ +N ++ +G V+K + YG G ++A A AG + V + Sbjct: 447 RPTWVHLDLTAIADNVRALRHHTG-VPLMVVLKGDGYGHGAARVARAALAAGAEMVAVAT 505 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 V EG LR A I VL P Q +L+ + + + G Sbjct: 506 VGEGRSLRAQGISAPILVLGYTPPWQVAEAIRLDLMVTLFDDDTAQALSAAALELGRPAR 565 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++VDTG RLG+S F + + + + +H A AD+ QL+ + Sbjct: 566 VHIKVDTGMARLGVSPAAVGPFLYYLRDLPGIEPVGLYTHFARADEADPEPTKHQLQLLQ 625 Query: 184 TLISHYK--GIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PMQTVV 236 T+++ G+ L +S+ L P +F + RPG++ YG M + Sbjct: 626 TVLAEITAAGLRPPLVHAANSAATLRFPMTYFDMVRPGLACYGIAPSPVVPLLPGMHPAL 685 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + +R+ AG +SYGG +R S IA +GYADG + + Sbjct: 686 SFYSEVAQVREHPAGTPISYGGAYVTSRPSRIATIPVGYADGLRRSPAWR---------- 735 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + I+G PI+G+I MD M D+TD ++ GD + I G I +D++A GT Sbjct: 736 --EVLIRGRRAPIVGRICMDYAMVDVTDIPGVQRGDPVTIIGRQGEEVIGVDEIAGWLGT 793 Query: 353 TNYDLLVRIGTRYAK 367 +Y++L I R + Sbjct: 794 ISYEVLTGILPRVPR 808 >gi|329766869|ref|ZP_08258397.1| alanine racemase [Gemella haemolysans M341] gi|328837594|gb|EGF87219.1| alanine racemase [Gemella haemolysans M341] Length = 375 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 164/382 (42%), Gaps = 27/382 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ +L+++L AL NN++ +N+L+ AVVK ++YGLG + IA LY GV+ F Sbjct: 1 MINDRPTQLRVNLDALLNNYNKLNSLNNEKIGLAVVKADSYGLGSKVIAEHLYQNGVRHF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCG 119 ++EE ++L+ + + VL I+ K + N + S L Sbjct: 61 ATATLEEALELKDVIKDSMVLVLGVINSQNVKYAVENNVSLTCPSKEWLEESLVHLQQIE 120 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 +++DTG R+G S E L N + + I SH + AD + ++ Q Sbjct: 121 GKLKIHVKLDTGMGRIGTSDLEELKEIDNLLDSEKIDFEGIFSHYSNADGEDDNYDNYQT 180 Query: 180 ERFRTLISHYKGIEASLA----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 E F + + + + + + + LTR GI++YG N + Sbjct: 181 ENFERSLKIFTHKPKYIHIENSAGTVKYSNRDDQYNLTRIGIAMYGCYPSGNIEKLDKVQ 240 Query: 236 V----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + + +++ ++K AG+ + YG + +D IA IGYADG G Sbjct: 241 LEPVASLVSKVTHVKKFQAGQKLGYGVSYEAKQDEYIATVPIGYADGLLRRAQGF----- 295 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 K + I+G++ MD M + +++VGD + FG + +D+ A Sbjct: 296 -------KIRVGSEECEIVGRVCMDQLMVRCSK--NVKVGDDVLFFGEYSGQKVSVDEFA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ I R + Y Sbjct: 347 EYQNTISYEIFCCINKRVPRVY 368 >gi|314969163|gb|EFT13261.1| alanine racemase [Propionibacterium acnes HL037PA1] Length = 375 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 149/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVAPVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|256844406|ref|ZP_05549892.1| alanine racemase [Lactobacillus crispatus 125-2-CHN] gi|256849206|ref|ZP_05554639.1| alanine racemase [Lactobacillus crispatus MV-1A-US] gi|262047222|ref|ZP_06020180.1| alanine racemase [Lactobacillus crispatus MV-3A-US] gi|295692134|ref|YP_003600744.1| alanine racemase [Lactobacillus crispatus ST1] gi|312978404|ref|ZP_07790146.1| alanine racemase [Lactobacillus crispatus CTV-05] gi|256613484|gb|EEU18687.1| alanine racemase [Lactobacillus crispatus 125-2-CHN] gi|256713982|gb|EEU28970.1| alanine racemase [Lactobacillus crispatus MV-1A-US] gi|260572467|gb|EEX29029.1| alanine racemase [Lactobacillus crispatus MV-3A-US] gi|295030240|emb|CBL49719.1| Alanine racemase [Lactobacillus crispatus ST1] gi|310894747|gb|EFQ43819.1| alanine racemase [Lactobacillus crispatus CTV-05] Length = 376 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 143/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A++ N M L+ + AVVK NAYG G ++A G V Sbjct: 6 HRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++E ++LR I VL + P I N+ I ++ L K + + Sbjct: 66 AILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 + VD+G R+G + E + + +H A AD Q+E Sbjct: 126 LKVHIGVDSGMGRIGFNEDEDFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQVE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + + R GI +YG N P Sbjct: 186 KFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSSIS 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ E+ + ++ G+ V YG +D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347 K + PI+G+I MD M + + + G + I D + A Sbjct: 301 -------KVKVGDEYCPIVGRICMDQFMVKMPKKMPL--GTKVVIISNDPTAPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|327457519|gb|EGF04174.1| alanine racemase [Propionibacterium acnes HL092PA1] Length = 375 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 148/373 (39%), Gaps = 24/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLRAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I L P + + + L SK G++ + Sbjct: 70 GQELVEAGITLPILKLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTL 185 VD+G R+GL + T + + ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPEHLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEESTRHEIDAFMTA 189 Query: 186 ISHYK----GIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 ++ + ++SG +LG + + R GI YG + + + ++ Sbjct: 190 VTQTQTDRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTINPGDAIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I G + PI+G+I MD M D+ S+ VGD + + G + DD+A GT +Y Sbjct: 299 VLIGGSVHPIVGRICMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAKF 368 ++ I R + Sbjct: 359 EITCAISKRVDRR 371 >gi|89054230|ref|YP_509681.1| alanine racemase [Jannaschia sp. CCS1] gi|122498888|sp|Q28RK6|ALR_JANSC RecName: Full=Alanine racemase gi|88863779|gb|ABD54656.1| alanine racemase [Jannaschia sp. CCS1] Length = 342 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 181/360 (50%), Gaps = 28/360 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL AL N+ +++ L A TAAVVK + YGLG ++ L AG FFV + EEG Sbjct: 6 LTVDLGALVANYRTLDRLGPGA-TAAVVKADGYGLGAGLVSTGLAKAGACQFFVATAEEG 64 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 V LR P I V G G +I D +L P+++S Q+ + ++ HPY +Q Sbjct: 65 VGLRQVLGPAPEINVFAGHMAGDTPLIRDAHLTPMLNSPKQVQRHRHVL---PGHPYGIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG +RLG+ + +L +L++SHLACAD P N+ QL +FR L Sbjct: 122 LDTGMHRLGVQPADWPAL-----RDQLHDATLLMSHLACADAPDHPQNAAQLAQFRALTD 176 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ G L+GP+YHF L RPG+ LYGG + VV +I IR Sbjct: 177 GIQ-TPRSLAATGGTLMGPDYHFDLIRPGVGLYGGLPFAGA----RPVVRLSLPVIQIRC 231 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 G + YG T IA + GYADG LS + + Sbjct: 232 VNPGATIGYGATYTATTPRQIATLSAGYADGLIRALSSKATL-----------WDGDTPC 280 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+++MD+ D+TD + + + I GP +D +A A+GT Y++L +G RY + Sbjct: 281 PLVGRVSMDLLTVDVTDCDT--PPEALDILGPHQTIDQLAEAAGTIGYEILTSLGPRYRR 338 >gi|161407967|ref|YP_001015793.2| alanine racemase [Prochlorococcus marinus str. NATL1A] Length = 402 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 161/385 (41%), Gaps = 29/385 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +++D ++NN + G+ AVVK + YG G E +A + G V Sbjct: 29 RSRAWVEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGV 88 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EEG++LR + +I +L + +E + S + ++ Sbjct: 89 ATLEEGIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKHK 148 Query: 123 PY--ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-----VN 175 + L+VDTG RLG E D + L I SHLA AD Sbjct: 149 KFFIHLKVDTGMTRLGCDCDEVKDLISKIDYLENISLKGIYSHLAIADKDLEKNTKLNFT 208 Query: 176 SVQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229 +Q+ RF ++ + K + LA+S+G L HF + R G+SLYG Sbjct: 209 QIQVTRFEKVLKDLGARNKSLCRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFESD 268 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + ++R+ L+R+ G V YG K R S +AV AIGYADG LSG S Sbjct: 269 LRLKPALKVKSRVTLVREVEKGIGVGYGHFFKTQRKSKLAVVAIGYADGVSRNLSGKISA 328 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 I G +VP +G I MD +FDITD I G + + G D I + Sbjct: 329 S-----------IDGVLVPQVGAIAMDQMVFDITDKPDIRTGQVLTLLGTDGAVCISPQN 377 Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370 SG+ +++L R + T Sbjct: 378 WCDLSGSIPWEVLCGFRNRLPRVVT 402 >gi|123961746|gb|ABM76529.1| putative Alanine racemase [Prochlorococcus marinus str. NATL1A] Length = 427 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 161/385 (41%), Gaps = 29/385 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +++D ++NN + G+ AVVK + YG G E +A + G V Sbjct: 54 RSRAWVEVDSKIIENNARVLKNFIGDDCSLMAVVKADGYGHGAETVAKSALTGGADSLGV 113 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EEG++LR + +I +L + +E + S + ++ Sbjct: 114 ATLEEGIQLRNAGLKCQILILGNLINSEELYSSFCWDLIPTISGIREAIICNNIAENKHK 173 Query: 123 PY--ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-----VN 175 + L+VDTG RLG E D + L I SHLA AD Sbjct: 174 KFFIHLKVDTGMTRLGCDCDEVKDLISKIDYLENISLKGIYSHLAIADKDLEKNTKLNFT 233 Query: 176 SVQLERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229 +Q+ RF ++ + K + LA+S+G L HF + R G+SLYG Sbjct: 234 QIQVTRFEKVLKDLGARNKSLCRHLANSAGTLSDSRLHFDMVRVGLSLYGYFPVNDFESD 293 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + ++R+ L+R+ G V YG K R S +AV AIGYADG LSG S Sbjct: 294 LRLKPALKVKSRVTLVREVEKGIGVGYGHFFKTQRKSKLAVVAIGYADGVSRNLSGKISA 353 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 I G +VP +G I MD +FDITD I G + + G D I + Sbjct: 354 S-----------IDGVLVPQVGAIAMDQMVFDITDKPDIRTGQVLTLLGTDGAVCISPQN 402 Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370 SG+ +++L R + T Sbjct: 403 WCDLSGSIPWEVLCGFRNRLPRVVT 427 >gi|84515510|ref|ZP_01002872.1| alanine racemase [Loktanella vestfoldensis SKA53] gi|84510793|gb|EAQ07248.1| alanine racemase [Loktanella vestfoldensis SKA53] Length = 345 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 196/367 (53%), Gaps = 33/367 (8%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 RL IDL A+ NW +++A++ N +TAAV+K + YGLG IA AL+ AGV+ FFV EE Sbjct: 5 RLTIDLDAVVANWRALDAMT-NCKTAAVIKADGYGLGSVNIAKALFKAGVRQFFVAVAEE 63 Query: 68 GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 +R P+ I V G G I D NL P+++SV Q+T + + + HP+ + Sbjct: 64 AAPIRAELGPRPEINVFSGHMKGDTAAIRDLNLTPMLNSVEQVTHHFETL---PGHPFGI 120 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG NRLGL +QE + ++ +L++SHLACAD+P +N QL F + Sbjct: 121 QLDTGMNRLGLEMQEWAAIAGLALDQ---NPTLVMSHLACADEPDHPMNPHQLANFHMMT 177 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + SL+++ GILLGP+YHF LTRPGI LYG + V+ E ++ IR Sbjct: 178 DGIS-VPRSLSATGGILLGPDYHFDLTRPGIGLYGADPFSD----GTPVIELEFPVVQIR 232 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY- 305 GE+V YG + R S IA + GYADG +LS F G Sbjct: 233 DVAQGEVVGYGNSWQAERASRIATISGGYADGIIRSLSDRAI------------FYHGKT 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDY--IQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 ++G+++MD+ D+TD D + + + +DDVA +GT Y+LL ++G Sbjct: 281 PCKLVGRVSMDLMTIDVTDLSE----DPKALSLICAEQTVDDVARRAGTIGYELLTQLGG 336 Query: 364 RYA-KFY 369 RY + Y Sbjct: 337 RYTRRIY 343 >gi|323465799|gb|ADX69486.1| Alanine racemase [Lactobacillus helveticus H10] Length = 376 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 141/381 (37%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +K++L A++ N M L N + AVVK N YG G ++A G F V Sbjct: 7 RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E ++LR I VL + P I + + V + L + Sbjct: 67 ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDTEKYLAKENLQL 126 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +D+G R+G + E + N + + +H A AD Q E+ Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEK 186 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232 F+ + S + +++ + L R GI +YG N S P Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 247 EPALSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 K + PI+G+I MD M + + + G + I + + A Sbjct: 301 ------KVKVGDEYCPIVGRICMDQFMVKMPKKMPV--GTKVVIISNNPSDPNNIKAAAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373 >gi|269218932|ref|ZP_06162786.1| alanine racemase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212043|gb|EEZ78383.1| alanine racemase [Actinomyces sp. oral taxon 848 str. F0332] Length = 382 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 161/394 (40%), Gaps = 39/394 (9%) Query: 1 MHSNE---------FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA 51 M ++ +IDL+A+++N S+ +G A AVVK +AYG G ++A A Sbjct: 1 MRTHSAGGIVISYYPAEARIDLSAIRSNLSSVREAAGEAAVLAVVKADAYGHGRAEVARA 60 Query: 52 LYNAGVQDFFVTSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110 L A + E + LR P RI ++ + + Sbjct: 61 LAPA-ADYLGAAQLGEALALREEVGPGPRILTWIFAPGAPLAQALRADVELSAGAFWAID 119 Query: 111 FYSKLMS-CGVSHPYALQVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLAC 166 ++ G + L+VDTG R G + + EA L + + SHLA Sbjct: 120 EIARAARETGTTAKVHLKVDTGMARGGFNLADVAEASRRLRALQADGLFSVVGLWSHLAR 179 Query: 167 ADDPSSHVNSVQLERFRT--LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYG 221 AD+P S Q+ERF + +GIE LA+S G L P + + RPGI LYG Sbjct: 180 ADEPESGATERQIERFEQARAAARSEGIEPEILHLAASGGALWHPAARYDMVRPGIVLYG 239 Query: 222 GTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 + + + + A +IL R A +SYG +K + + V +GY D Sbjct: 240 LSPNPEVATARELGLTPAMELSASLILERGVPAQTPISYGHTEKTEAPTRLGVVPLGYGD 299 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 G P SG+ V I G++ MD + D+ ++ + GD +F Sbjct: 300 GIPRAASGVGPVSVGGV-----------RTRIRGRVCMDQFVVDVPEAATA--GDTAFLF 346 Query: 338 GPD--IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G D+ A A GT Y+++ R+G R + Y Sbjct: 347 GAGDLPSADEWAQACGTIGYEIVTRLGARVPRRY 380 >gi|317968847|ref|ZP_07970237.1| alanine racemase [Synechococcus sp. CB0205] Length = 405 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 107/381 (28%), Positives = 168/381 (44%), Gaps = 28/381 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N ++ L AVVK + YG G +A + G F V Sbjct: 25 RQRAWVEIDEAAIQANAEALRRSLQPGCALMAVVKADGYGHGAVPVARSAAAGGASCFGV 84 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EGV+LR + VL HP + + L+P +S + + L S G Sbjct: 85 ATLQEGVELRQAGLDQPVLVLGNLSHPDELRACLHWQLMPTLSGMREALLCQNLASGSGR 144 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSV 177 L++DTG +RLG +E + QL+ + SHLA AD + + + Sbjct: 145 QLAVHLKLDTGMSRLGAPWEEGPRLVQAIAGLESLQLAGVYSHLAGADAPGNGLDALTAT 204 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q +RF ++++ + + LA+S+G L H+ L R G++LYG + Sbjct: 205 QQQRFDSVLTGLQQQQLPSGCRHLANSAGTLRSRQLHYDLVRVGLALYGQRPSDHLGSGL 264 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 +Q + AR+ LIR+ AG VSYG + R S +AV IGYADG P LS Sbjct: 265 DLQPAMHVRARVSLIREVPAGVGVSYGHRFITQRPSRLAVVGIGYADGVPRLLSNQL--- 321 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + G VP LG ITMD + D TD +E G + + G + I Sbjct: 322 --------EVLFGGQRVPQLGAITMDQLVLDATDVPELEAGSVVTLLGEEAGERIDPTAW 373 Query: 347 ALASGTTNYDLLVRIGTRYAK 367 + GT +++L R + Sbjct: 374 SDPIGTIPWEILCGFKHRLPR 394 >gi|300812106|ref|ZP_07092554.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496945|gb|EFK32019.1| alanine racemase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 376 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 32/387 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + N L I+L A+K N A L + VVK NAYG G ++AP + AG Sbjct: 1 MITAVNRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG++LR I VL + + ++ +SS+ L K++ Sbjct: 61 DGFCVAMLDEGLELRRVQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLR 120 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVN 175 G+ L +D+G R+G S E + + + +H A AD + Sbjct: 121 KEGLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------I 226 Q++RF+ + S + +++ L G + + R GI LYG + Sbjct: 181 DYQVKRFKHMESLLTVKPKWIHVDNTAASLFGKDVASDIVRFGIGLYGLNPSSAPGSQDL 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ ++ + + +++ G V YG D I +GYADG+ G Sbjct: 241 EPAFALKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 K + PI+G++ MD M + + G +++ D Sbjct: 301 ------------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 L A T +Y++ + R + Y Sbjct: 347 LRRAADWLDTIHYEVACQFNDRLDRIY 373 >gi|325125145|gb|ADY84475.1| Ala racemase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 376 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 149/387 (38%), Gaps = 32/387 (8%) Query: 1 MHS--NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M + N L I+L A+K N A L + VVK NAYG G ++AP + AG Sbjct: 1 MITAVNRPAALHINLAAIKENTRQAKAHLKPGQKLFCVVKANAYGHGAARLAPVMEEAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F V ++EG++LR I VL + + ++ +SS+ L K++ Sbjct: 61 DGFCVAMLDEGLELRRAQIVKPILVLGLQPAEEAALAAANDISLPVSSLDWLKKAEKVLR 120 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVN 175 + L +D+G R+G S E + + + +H A AD + Sbjct: 121 KEDLQLKIHLAIDSGMGRIGFSEDEDFKAVNEYLQGNDAFFVEGMFTHFASADSADASYF 180 Query: 176 SVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK-------I 226 Q++RF+ + S + +++ L + + R GI LYG + Sbjct: 181 DYQVKRFKHMESLLTVKPKWIHVDNTAASLFDKDVASDIVRFGIGLYGLNPSSAPGSRDL 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + ++ ++ + + +++ G V YG D I +GYADG+ G Sbjct: 241 EPAFALKPAMSFVSELTYVKQIHKGYGVGYGSTHIAEEDEWIGTVPVGYADGWIRKFQGF 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----K 342 K + PI+G++ MD M + + G +++ D Sbjct: 301 ------------KVKVGDTYCPIVGRVCMDQFMVLLPK--EVPAGTPVELISADPAAPNS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 L A T +Y++ + R + Y Sbjct: 347 LRRAADWLDTIHYEVACQFNDRLDRIY 373 >gi|169630818|ref|YP_001704467.1| alanine racemase [Mycobacterium abscessus ATCC 19977] gi|169242785|emb|CAM63813.1| Alanine racemase [Mycobacterium abscessus] Length = 405 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 161/387 (41%), Gaps = 35/387 (9%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL A+ +N + +G AR VVK + YG G ++A A AG + VTS+ Sbjct: 23 AQAVIDLGAIAHNVKLLREHAGTARLMTVVKADGYGHGAVRVARAALAAGADELGVTSIA 82 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E +++R A + ++ +SS+ Q + S G + Sbjct: 83 EALQIRAAGLDAPLLAWLHAPGADYAAALHADVEVAVSSLGQLGELLAAARSTGRQAITS 142 Query: 126 LQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG NR G+ ++ + + ++ +L I+SH A AD P +Q+ RF Sbjct: 143 IKVDTGLNRNGVPAGYTRDLFEALAKAQAEESIRLRGIMSHFAYADQPGHPTVDMQIGRF 202 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--------- 228 + +G A L++S+ L P+ + + RPGI++YG Sbjct: 203 NEALELARGFGLRYELAHLSNSAATLTRPDARYDMVRPGIAVYGINPLGAAESATSNRGR 262 Query: 229 -SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 S + ++ + ++ AGE VSYG RD+ A+ IGYADG L Sbjct: 263 TSFDLIPAMSLTCAVSSVKPVSAGEGVSYGHVWTAPRDTNAALIGIGYADGVVRALGNRF 322 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP----DIK 342 + I G P +G++ MD + D+ D ++ GD +FGP + Sbjct: 323 -----------EVAIGGRRYPNIGRVCMDQFVVDLGDNDAGVQAGDVATLFGPGTGGEPT 371 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 D A T Y+++ R + Y Sbjct: 372 AQDWAELLDTIAYEVVTGPRGRVVRTY 398 >gi|302337568|ref|YP_003802774.1| alanine racemase [Spirochaeta smaragdinae DSM 11293] gi|301634753|gb|ADK80180.1| alanine racemase [Spirochaeta smaragdinae DSM 11293] Length = 402 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 154/386 (39%), Gaps = 29/386 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H + ++DL L N ++ SG ++K NAYG G A GV Sbjct: 8 HPLRRTQAEVDLDLLSKNIRTLWNRSGCEGYLLLLKANAYGHGSIACAKMAEELGVTFGG 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGV 120 V + +E LR + + +L + + FD ++ +SS+ +++ G Sbjct: 68 VAAYQEVRFLRSAGVRLPLLLLEDLFDDEIAPAFDADVSFSVSSLAYAEKVARVAEKAGK 127 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L VDTG RLG E + + + L + SH +D+ V + Q+E Sbjct: 128 VGKVHLNVDTGMGRLGCFPDELMKVAGYVHHSRWLALEGLFSHFPSSDEGDLSVPTAQIE 187 Query: 181 RF-----RTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKIN--KSHPM 232 F + + A+S ++ P F + RPG+S +G + Sbjct: 188 LFSRLDRELEAAGIRPKWRHFANSGAVIDFPAASSFDMIRPGVSSFGIYPSKEVTHDVGL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V++ ++ I+ IR G + YG R+S IAV IGY DGY S Sbjct: 248 FRVLSLKSAILSIRTFPKGAKIGYGSTFVTERESRIAVVPIGYGDGYVRAFSNNSD---- 303 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP--------DIKL 343 + G VP++G+I+MDM D+TD + GD + G +I Sbjct: 304 -------VLVHGRRVPVVGRISMDMITVDLTDLPESVATGDEAVLVGEQAWEDRSGEIDA 356 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 +D+A GT +Y++ + R + + Sbjct: 357 EDLAARIGTISYEVTCLLTARVPRVF 382 >gi|254426806|ref|ZP_05040513.1| alanine racemase [Alcanivorax sp. DG881] gi|196192975|gb|EDX87934.1| alanine racemase [Alcanivorax sp. DG881] Length = 353 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 152/367 (41%), Gaps = 20/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R++I +AL +N L+ A A+VK N YG G A A++ V V Sbjct: 2 RGTRVEIRPSALAHNARLARQLADGAEVFAMVKANGYGHGLLLAADAMHEN-VSGLGVAL 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 VEE LR + I V G +E + + V+ V L++ Sbjct: 61 VEEARALREHGMTLPILVAEGFFDAEELKEAERLSLEVV--VHSQWQVELLLASPCPVRI 118 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V+TG NRLG + ++SH ACAD + QL Sbjct: 119 WLKVNTGMNRLGFRP-DTALQAAAQLRAGGMAPVGVMSHFACADVSQDAYSEKQLLV-AG 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEAR 241 I+ + S ++S+ +L P H Q RPGI LYG + + AR Sbjct: 177 QIAEQLMLPLSASNSAALLRYPQSHAQRVRPGIMLYGSSPFDWQTASELGLAVSHRFTAR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I I AGE V YG +AV A+GY DGYP G Sbjct: 237 VIAINAVEAGESVGYGATWTAAEPRQVAVVAVGYGDGYPRHA-----------PSGTPVA 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G + ++G+++MDM D+T VGD ++++G + +DDVA A GT +Y+L +I Sbjct: 286 VNGNITELVGRVSMDMLTVDVTGL-DASVGDEVELWGDVVDVDDVARACGTISYELFCQI 344 Query: 362 GTRYAKF 368 R + Sbjct: 345 TGRPERV 351 >gi|329770407|ref|ZP_08261789.1| alanine racemase [Gemella sanguinis M325] gi|328836530|gb|EGF86190.1| alanine racemase [Gemella sanguinis M325] Length = 375 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 167/382 (43%), Gaps = 27/382 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ RL ++L AL N+ +N LS A+VK N+YGLG + I+ LY GV+ F Sbjct: 1 MINDRPTRLIVNLDALLRNYEKLNNLSDKKVGLAIVKANSYGLGSKVISKLLYENGVRHF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCG 119 V + EE ++L+ ++ I VL +P K + N+ + S +L S Sbjct: 61 AVATFEEALELKEVIKESLILVLGVTNPKNVKYAVENNISLTCPSKEWLEEAIKELDSIT 120 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++++TG NR+G ++ + + + + SH + AD ++ + Q Sbjct: 121 GKLKVHVKIETGMNRIGTFEEKEILEIDELLDYPKVEFEGVFSHYSNADGENNDYDDYQT 180 Query: 180 ERFRTLISHYKGIEASLA----SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHP 231 F L++ +K + + + + ++ L+R GISLYG N Sbjct: 181 ANFNRLVALFKHKPRYVHIENSAGTVKYNDRDDNYNLSRIGISLYGCYPSKNIEKLNKLE 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ V + +++ +++ G V YG + + D IA IGYADG G Sbjct: 241 LEPVASLVSKVTHVKRIPKGTKVGYGISYETSEDEYIATVPIGYADGLLRRAQGFKLN-- 298 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVA 347 + G I+G++ MD M ++ I+VGD + +FG I +D+ A Sbjct: 299 ----------VAGEECEIVGRVCMDQLMVRCSE--KIKVGDDVLVFGEYNNQKISVDEFA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ I R + Y Sbjct: 347 DYQKTISYEIFCCINQRVPRKY 368 >gi|294814508|ref|ZP_06773151.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064] gi|326442897|ref|ZP_08217631.1| alanine racemase [Streptomyces clavuligerus ATCC 27064] gi|294327107|gb|EFG08750.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064] Length = 396 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 158/382 (41%), Gaps = 29/382 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R +IDL AL+ N ++ A + A AVVK + YG G A A AG + Sbjct: 7 HTRARAEIDLAALRANVRALRARAPRAGLMAVVKADGYGHGAVPCARAAIAAGAEWIGTA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSH 122 + +E + LR RI G + + L +S + + + G + Sbjct: 67 TPDEALALRAAGVPGRIMCWLWTPGGPWREGIEAGLDMSVSGLWALDEVVAAARATGRTA 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQL 179 L+ DTG R G + + + I SH ACAD+P + QL Sbjct: 127 RIQLKADTGLGRNGCQPADWAALVAAARAAEAEGAVRITGLWSHFACADEPGHPSIAHQL 186 Query: 180 ERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSH 230 FR +++H +A+S L P HF L RPGI++YG + + Sbjct: 187 TAFREMVAHAEKEGADPEVRHIANSPATLTLPEAHFDLVRPGIAMYGVSPSPEIGTHQEL 246 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V+T A + L+++ G VSYG + + + +GYADG P SG Sbjct: 247 GLRPVMTLAASVALVKRVPEGHGVSYGHHYTTPGATTLGLIPVGYADGVPRHASGR---- 302 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346 G + G + G+I MD + D+ I G +FGP + +D Sbjct: 303 -------GPVLVGGRVRTAAGRIAMDQFVVDLGGQ-EIPEGSEAVLFGPGTRGEPSAEDW 354 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A A+GT Y+++ RIGTR + Sbjct: 355 ARAAGTIAYEIVTRIGTRVPRV 376 >gi|189025906|ref|YP_001933678.1| alanine racemase [Treponema pallidum subsp. pallidum SS14] gi|20141182|sp|Q56346|ALR_TREPA RecName: Full=Alanine racemase gi|226711066|sp|B2S3S0|ALR_TREPS RecName: Full=Alanine racemase gi|189018481|gb|ACD71099.1| alanine racemase [Treponema pallidum subsp. pallidum SS14] gi|291060047|gb|ADD72782.1| alanine racemase [Treponema pallidum subsp. pallidum str. Chicago] Length = 377 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 156/383 (40%), Gaps = 33/383 (8%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + I L L++N + + + AR VK +AYG G +A A + GV F V V+E Sbjct: 5 QALIHLANLRHNLGEIMSRT-RARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHP 123 +LR +A I L + + + + VIS + + + G + Sbjct: 64 ASQLRAAGVRAPILCLSTPTAEEISSLIEHRVHTVISERAHIALIARALRQSADTGATCG 123 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLE 180 +++DTG R+G + EA L + +H + AD + +Q Sbjct: 124 VHVKIDTGMGRIGCAPDEACALVQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRA 183 Query: 181 RFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPM 232 F + + + S+ +S+ +L P HF + RPG+ YG Sbjct: 184 HFMHCVQYIRKSGISIPLVHAANSAALLCHPRAHFDMVRPGLLAYGYAPESVHPAVRSVF 243 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V+ ++ I+K AG VSY + ++ + + IGYADG LS Sbjct: 244 LPVMELVTQVRAIKKIPAGAYVSYQRLWRAHTETHVGILPIGYADGVMRALS-------- 295 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDV 346 G + I G P++G I MD + D+ L + VGD + +FGP D + Sbjct: 296 ---PGLQVCIGGKWYPVVGAICMDQCVVDLGTPLRVTVGDRVTLFGPQDAGGPGQGADVL 352 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A +GT Y+LL IG R + Y Sbjct: 353 ASHAGTIPYELLCAIGKRVERVY 375 >gi|85703131|ref|ZP_01034235.1| alanine racemase [Roseovarius sp. 217] gi|85672059|gb|EAQ26916.1| alanine racemase [Roseovarius sp. 217] Length = 345 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 181/363 (49%), Gaps = 28/363 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW +++A++ TAAVVK +AYGLG K+A +L AG + FFV EEG Sbjct: 6 LTIDLDAITANWRALDAMTAG-ETAAVVKADAYGLGAAKVARSLARAGARHFFVAVAEEG 64 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 LR I+V G PG +I D +L P+I+S+ Q+ + + HP+ +Q Sbjct: 65 AALRDTLGSGPAIYVFSGHMPGDADMIGDMHLTPMINSLEQM---IRHVESLPGHPFGIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +D+G NRLG+ E + + LI+SHLACAD+ +N QL FR + Sbjct: 122 LDSGMNRLGMEPGEWAALRDIALAQ---DPRLIMSHLACADESDHAMNPQQLATFREMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ GILL YHF L RPGI LYGG + VVT + +I R Sbjct: 179 G-LDVPRSLANTGGILLDAAYHFDLARPGIGLYGGRPFAEA----RAVVTLDIPVIQCRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y R++ IA A GYADG + + + Sbjct: 234 LAPGETVGYANGFTAPRETRIATVAAGYADGILRAMG-----------PKTSLWAEDIPC 282 Query: 308 PILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 PI G+I+MD+ DITD + +Q+ GP +D +A + T Y++L +G RY Sbjct: 283 PIAGRISMDLICVDITDLGHDPK---SLQLLGPYQSIDTLADHADTIGYEILTSLGARYT 339 Query: 367 KFY 369 + Y Sbjct: 340 RRY 342 >gi|88810604|ref|ZP_01125861.1| Alanine racemase region [Nitrococcus mobilis Nb-231] gi|88792234|gb|EAR23344.1| Alanine racemase region [Nitrococcus mobilis Nb-231] Length = 365 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 164/367 (44%), Gaps = 16/367 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R +DL AL++N + +AR AV+K N YG G ++A AL A V+ Sbjct: 3 RLARATVDLGALRHNLAVARQAAPSARVIAVLKANGYGHGLLQVAAALAQADAFA--VSC 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E +LRL + RI +L G E +FD + + + + Sbjct: 61 MAEASRLRLAGYRHRIILLAGYFEPDELPLFDRYALDPVIHAEWQLAPLERSTLQRPLDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG +RLG + + + ++HLA AD+ +QLE F Sbjct: 121 WLKVDTGMHRLGFPAGQVCEVYQRLRSMPSVASVRFMTHLARADNRRDPTTRMQLETFEA 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAEARI 242 G E S+A+S+ L H Q RPGI LYG + I+ +S + V T EAR+ Sbjct: 181 ACQGLSG-ERSIANSAATLAWRQTHAQWVRPGIMLYGCSPFIDGLESPALWPVQTLEARL 239 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + G+L+ YGG + V ++GY DGYP G + Sbjct: 240 VAVNYHRRGDLIGYGGIYACPEAMPVGVVSVGYGDGYPRHA-----------PSGTPLLV 288 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G V ++G+++MDM D+ + + +VGD + ++G + + VA GT Y+LL ++ Sbjct: 289 AGREVSLVGRVSMDMLSVDLRSAPNAQVGDLVVLWGESLPVGRVAEQCGTIAYELLCKLT 348 Query: 363 TRYAKFY 369 +R Y Sbjct: 349 SRVQFRY 355 >gi|322506310|gb|ADX01764.1| dadX [Acinetobacter baumannii 1656-2] Length = 367 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 143/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++R I +L G+ P L I S Q+ + + Sbjct: 61 LEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL--ACADDPSSHVNSVQLER 181 L++++G NRLG Q + N ++H A AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQNYVQAWERLNNLANVSKITHMTHFSDADADRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVRDLPGERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIIAVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|170750293|ref|YP_001756553.1| alanine racemase [Methylobacterium radiotolerans JCM 2831] gi|170656815|gb|ACB25870.1| alanine racemase [Methylobacterium radiotolerans JCM 2831] Length = 364 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 188/363 (51%), Gaps = 15/363 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL IDL A+ NW + A A AAVVK +AYG G ++ PAL+ AG + FFV + Sbjct: 15 ARLTIDLGAIAANWRILAARGAGADCAAVVKADAYGCGIGRVGPALWAAGCRTFFVAHLS 74 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV R P+A I+VL G+ G L PV+ S +L+ ++ + Sbjct: 75 EGVAARAALPEAAIYVLNGLPLGAAAAFAAHGLRPVLGSAEELSDWAAFAGNRPPAALHV 134 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 DTG NRLGLS+ EALD + L++SH A+ P VN+ Q+ F + Sbjct: 135 --DTGMNRLGLSVPEALDLA-GDARIAEAGIDLLLSHFVSAETPDDPVNARQIADFARVR 191 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + Y G+ ASLA+SSGI L L RPG +L+GG ++PM+ VV EA I +R Sbjct: 192 AAYPGLRASLANSSGIFLD-GARHDLLRPGYALFGGNPTPGAANPMRPVVRLEATIAQVR 250 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG Y G+ T S +A ++GYADG+P ++SG G+ + G Sbjct: 251 GVAAGATAGYNGRWTATAPSRLATLSLGYADGFPRSISGR-----------GQALVGGVP 299 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 PILG ++MD+ + D+T + + G + G + +D V A+GT Y++L +G+RY Sbjct: 300 CPILGSVSMDLIILDVTAAPAARRGAAAVLIGDRLDIDTVGRAAGTIGYEILTGLGSRYV 359 Query: 367 KFY 369 + Y Sbjct: 360 RTY 362 >gi|218551070|ref|YP_002384861.1| Alanine racemase 3 [Escherichia fergusonii ATCC 35469] gi|218358611|emb|CAQ91259.1| Alanine racemase 3 [Escherichia fergusonii ATCC 35469] Length = 388 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 172/360 (47%), Gaps = 15/360 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ A+ +N+ + + A+ AV+K NAYGLG E IAPALY A + FFV + EGV Sbjct: 36 INRAAIVDNYRMLARHAAPAQCGAVLKANAYGLGAETIAPALYAANCRIFFVAQLSEGVA 95 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV- 128 LR P A + VL G+ P F + P+++S+ Q+ + L+ + Sbjct: 96 LRKILPTDAMVVVLNGVMPEAMVFCFAQQITPLLNSIDQVMAWLTLLETRQQRRAVMIQL 155 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG+ Q+ + + IISHLA AD P +N VQ R + + Sbjct: 156 DSGMSRLGVMSQQLMRLAAIFRERNWPAPDYIISHLANADRPDHALNMVQHARLQQAKAV 215 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L + L RPGI+L+G T + S ++ V T I+ ++ Sbjct: 216 FPSSRFSLANSCGMFLHLGWREDLCRPGIALFGVT-QPWFSRLLKPVFTLTLTILRVQDV 274 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 AG V YG TR IA + GYADG P + +G +P Sbjct: 275 PAGTPVGYGSTVTATRPLRIATISAGYADGVPRNM-----------RPPAGVCWRGVRLP 323 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +LG++ MD M D + GD ++ G L++VA A T Y+++ R+G R+ + Sbjct: 324 VLGRVCMDSFMVDASAVSP-TAGDVVEFIGTGQTLEEVAAACDTIPYEIMTRLGARFQRI 382 >gi|315605945|ref|ZP_07880976.1| D-alanine racemase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312227|gb|EFU60313.1| D-alanine racemase [Actinomyces sp. oral taxon 180 str. F0310] Length = 426 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 143/401 (35%), Gaps = 47/401 (11%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL A+ +N + A + A A VK NAYG G +A A AG V + E Sbjct: 17 ASIDLAAIGHNLKVLRAAAPGALQLATVKANAYGHGLIPVARAALEAGADWLGVAQLAEA 76 Query: 69 VKLRL-------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 LR + I ++ +S L G Sbjct: 77 FALREGLDAAGVAREDSPILAWISTSSSDFAAAIAADIDLSVSWTWVLAHICAAARQVGR 136 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPS---SHV 174 +++DTG +R G +L + L + SH++ ADDPS + Sbjct: 137 PARVHVKIDTGMSRAGSTLADLPTLAAALKAASDDGLIDVVGAWSHMSRADDPSDGGNAS 196 Query: 175 NSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--- 226 + + F + + + LA++SGIL P H+ + R GI LYG + Sbjct: 197 TASHVRIFEEGLRILREAGVRPRIRHLAATSGILWHPQTHYDMVRVGIGLYGLSPDPAVA 256 Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + +T A + ++ G VSYGG I + +GY DG S Sbjct: 257 SAADLGLIPALTLCAPLTSVKVIEEGSPVSYGGTWAAPTRRWIGLVPLGYGDGILRAASN 316 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-------------LSIEVGD 332 + P++G++ MD M D+ + VGD Sbjct: 317 RARVLVHTASGPLS-------APVVGRVCMDQFMIDLGKAAGDAGEATAHAGQPPARVGD 369 Query: 333 YIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + + G + D+ A A+ T NY+++ R+G + Y Sbjct: 370 EVILLGNGAGGEPLADEWADAADTINYEIVTRLGAHIPRTY 410 >gi|295395165|ref|ZP_06805373.1| alanine racemase [Brevibacterium mcbrellneri ATCC 49030] gi|294971927|gb|EFG47794.1| alanine racemase [Brevibacterium mcbrellneri ATCC 49030] Length = 384 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 157/392 (40%), Gaps = 37/392 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S ID AL +N + + + A+VK +AYG G + PAL AGV F Sbjct: 1 MTSAPLT-AVIDTRALVHNVQLLQERAAGKQLVAIVKADAYGHGVNLVVPALARAGVTHF 59 Query: 61 FVTSVEEGVK-------LRLYTPQA-----RIFVLYGIHPGQEKIIFDTNLIPVISSVPQ 108 ++ E V L + + + + + S Sbjct: 60 GTATIPEAVAVQDILAGLSDHGDDCGESDHTVMCWLYEPNADLSEPVERGIELGVGSPAA 119 Query: 109 LT-FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 L ++ + G + L+VDTG R GL+ + Q+ ++SH ACA Sbjct: 120 LESIFNAAHTTGKTARIHLKVDTGLGRNGLNSTQLQQVLEQLTTAHGVQVCGVMSHFACA 179 Query: 168 DDPSSHVNSVQLERFRTLIS------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221 D+P + N+ Q+ERF + + +A+S IL R G+++YG Sbjct: 180 DEPDNDFNTTQIERFNQAVDTVKATLQIDNLMEHIANSPAILSMDPVPGNAVRAGVAMYG 239 Query: 222 GTDKINKSH----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 + H +Q +T + + + AG+ SYG + + S A+ A GY D Sbjct: 240 LSPFAPVDHAYSEGLQPAMTLVSHVCAAKDVPAGQGASYGLRYTTSASSKFALVAGGYGD 299 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 G P S I+G P++G I MD + D+ D+ + GD + I+ Sbjct: 300 GIPRQAS-----------HKAHVAIQGKAFPVVGSIAMDQMIADVGDA-QVSPGDPVVIW 347 Query: 338 GP-DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 G +D+ A +GT NYD++ R+G R + Sbjct: 348 GNGGPHVDEWAQWAGTINYDIVTRLGARVPRV 379 >gi|259416801|ref|ZP_05740721.1| alanine racemase [Silicibacter sp. TrichCH4B] gi|259348240|gb|EEW60017.1| alanine racemase [Silicibacter sp. TrichCH4B] Length = 345 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 186/365 (50%), Gaps = 25/365 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RLKI+L AL NW +++A + + TAAVVK N YGL ++ AL AG ++FFV E Sbjct: 4 ARLKINLDALAINWRNLDAKT-SCETAAVVKANGYGLESGRVGKALAQAGARNFFVAIAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG+ LR P I V G G K++ D L P+++S+ Q+ + HP+ Sbjct: 63 EGIALRRALGPGPGISVFSGHMEGDAKLLRDFQLTPMLNSLDQML---RHFESMPGHPFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + + ++ L++SHLACAD+P +N QL+ F + Sbjct: 120 VQLDSGMNRLGMEAAEWMAVRDIALDQ---NPVLLMSHLACADEPGHGMNPYQLKNFIEM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SLA++ G+LLG +YHF L RPGI LYGG + VV E +I Sbjct: 177 TEG-LNLPRSLAATGGLLLGRDYHFDLCRPGIGLYGGAPYSDA----LPVVELEVPVIQT 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG RD+ IA A GYADG G + Sbjct: 232 RDLAPGESVGYGNTWIAQRDTRIATIAAGYADGLHRAFQ----------RQGIMAYAGST 281 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+I+MD+ DITD + Y+ + +D +A A+ T Y++L +G RY Sbjct: 282 PCPVVGRISMDLITVDITDLDDVPP--YLSLINEAQTVDVLANAADTIGYEVLTSLGNRY 339 Query: 366 AKFYT 370 A+ Y+ Sbjct: 340 ARTYS 344 >gi|116628941|ref|YP_814113.1| alanine racemase [Lactobacillus gasseri ATCC 33323] gi|238853540|ref|ZP_04643912.1| alanine racemase [Lactobacillus gasseri 202-4] gi|282852616|ref|ZP_06261958.1| alanine racemase [Lactobacillus gasseri 224-1] gi|311111249|ref|ZP_07712646.1| alanine racemase [Lactobacillus gasseri MV-22] gi|122274061|sp|Q046E7|ALR_LACGA RecName: Full=Alanine racemase gi|116094523|gb|ABJ59675.1| Alanine racemase [Lactobacillus gasseri ATCC 33323] gi|238833836|gb|EEQ26101.1| alanine racemase [Lactobacillus gasseri 202-4] gi|282556358|gb|EFB61978.1| alanine racemase [Lactobacillus gasseri 224-1] gi|311066403|gb|EFQ46743.1| alanine racemase [Lactobacillus gasseri MV-22] Length = 376 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 147/384 (38%), Gaps = 34/384 (8%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A+K N + M L + AVVK N YG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIKRNIENEMQHLEPGQKMLAVVKANGYGHGAVEVAKVADQIGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I ++ + ++ L K + + Sbjct: 66 AILDEALELRRADITKTILVLGVVSPEYAPIAAANDISLTVPNLEWLKEAEKYLENSDLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + N + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFNEDKDFIAANKFLENNDNFYIEGMFAHFASADSSDETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + L R GI +YG N + P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHNGIKSDLVRFGIGIYGLNPSSNPNSPDLKSKIA 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ E+ + ++ G+ V YG +D++I +GYADG+ G Sbjct: 246 LDPALSFESELTHVKTIHQGDGVGYGSTFVADKDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV----- 346 K + PI+G+I MD M ++ + + G + I + DD+ Sbjct: 301 -------KVKVGNTYCPIVGRICMDQFMVEMPKEMPL--GTKVVIISDNP--DDLNNIKA 349 Query: 347 -ALASGTTNYDLLVRIGTRYAKFY 369 A T +Y++ + R + Y Sbjct: 350 AADYVDTIHYEVACLLNDRLPRVY 373 >gi|184156444|ref|YP_001844783.1| alanine racemase [Acinetobacter baumannii ACICU] gi|260557641|ref|ZP_05829855.1| alanine racemase [Acinetobacter baumannii ATCC 19606] gi|183208038|gb|ACC55436.1| Alanine racemase [Acinetobacter baumannii ACICU] gi|260408814|gb|EEX02118.1| alanine racemase [Acinetobacter baumannii ATCC 19606] Length = 367 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++R I +L GI P L I S Q+ + + Sbjct: 61 LEEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPITIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLSIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|332875573|ref|ZP_08443386.1| alanine racemase [Acinetobacter baumannii 6014059] gi|193076000|gb|ABO10585.2| alanine racemase 2 PLP-binding, catabolic [Acinetobacter baumannii ATCC 17978] gi|332736276|gb|EGJ67290.1| alanine racemase [Acinetobacter baumannii 6014059] Length = 367 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R I +L GI P L I S Q+ + + Sbjct: 61 LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|295111805|emb|CBL28555.1| alanine racemase [Synergistetes bacterium SGP1] Length = 383 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 101/380 (26%), Positives = 161/380 (42%), Gaps = 30/380 (7%) Query: 6 FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +IDL AL+ N S+ L ++ AVVK +AYG G ++A L GV V Sbjct: 10 RTWAEIDLDALEGNVRSLKGLLKPGVKSLAVVKADAYGHGIVEVARKLETCGVDMLAVAY 69 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHP 123 V V LR + I L P ++++ ++ + + L + G + Sbjct: 70 VMAAVTLRKNGIKLPILCLGQSAPSLAPLMWEYDVTQAVGDLENGLALSRAASAAGRTIK 129 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-----LSLIISHLACADDPSSHVNSVQ 178 ++VDTG R+G E+ L + + SH A AD +Q Sbjct: 130 IHVKVDTGMGRIGFYWPESGWEAVADEMATLCRLPGLEAEGLFSHFANADGDP-EYTRMQ 188 Query: 179 LERFRTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGG---TDKINKSH 230 + +F +G+ L + L P H + R G+ LYG +++ Sbjct: 189 MAKFAAARQALADRGVTFRLGHIAASLGVLRYPEAHLDMGRFGLVLYGYASSDEEVESPA 248 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V+T +ARI +R+ G + YGG L RDS++AV GYADGYP LS S Sbjct: 249 ELKPVMTLKARIAAVRELPKGAKIGYGGTAVLKRDSVLAVLPTGYADGYPRALSNRMS-- 306 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 +I + P++G++ MDM M D+TD + GD + + L A + Sbjct: 307 ---------VYIHDRLCPVVGRVCMDMFMADVTDVPGVRAGDEAVLLDGRLMLK--AALA 355 Query: 351 G-TTNYDLLVRIGTRYAKFY 369 G T ++LL I R + + Sbjct: 356 GHTIIHELLSCIMPRVPRVF 375 >gi|239503097|ref|ZP_04662407.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii AB900] Length = 367 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R I +L GI P L I S Q+ + K Sbjct: 61 LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEKHPYSA-QFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|227431178|ref|ZP_03913233.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353073|gb|EEJ43244.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 373 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL A++ N + +G R AVVK NAYG G +++ AL+ GV DF V + Sbjct: 10 RPTWLDIDLKAIQTNAKLIMRHAGAQRLIAVVKANAYGHGAKQVVGALFEVGVYDFAVAT 69 Query: 65 VEEGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + EGV LR Y PQA I + Q +++ + L P + + L + G Sbjct: 70 IGEGVDLRKYYPQAEINIFLLGVQDVTQTEVMVENRLSPAVGTTEWLDEAVNYIKDGQKL 129 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G A++ ++ + QL+ + +H A ADD + + Q++R Sbjct: 130 DIQLAVDTGMGRMGAHSASAVEDMYHLIQGTEKFQLAGVFTHFATADDNNQNYYDEQVQR 189 Query: 182 FRTLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235 F + + L S S I + R G LYG + P++ Sbjct: 190 FYQWVQSAGIPKQYLHLANSGSAIWHHDEIYTDTIRVGSVLYGYNPGAPEKKMPLPLKPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++++ + + GE VSYG + IA IGYADGY +SG+ Sbjct: 250 LQLKSKLGSVHQLTTGESVSYGATYTAEKPQWIATLPIGYADGYLRRMSGM--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 K + G++ ++G++TMD + + + G + + G I +++VA + Sbjct: 301 ---KVLVDGHIEHVIGRVTMDQIVITLKQKYPV--GKTVTLVGLEGENQISVEEVAEYAQ 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++L G R + Y Sbjct: 356 TIPHEILTNFGARLPRIY 373 >gi|323516181|gb|ADX90562.1| alanine racemase [Acinetobacter baumannii TCDC-AB0715] Length = 367 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++R I +L G+ P L I S Q+ + + Sbjct: 61 IEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVILPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|289209091|ref|YP_003461157.1| alanine racemase [Thioalkalivibrio sp. K90mix] gi|288944722|gb|ADC72421.1| alanine racemase [Thioalkalivibrio sp. K90mix] Length = 367 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 155/379 (40%), Gaps = 30/379 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++L AL++N L+ +V+K YG G A AL + Sbjct: 1 MRRAASIQL--HPEALRHNLSVARRLAPAVPMWSVIKAEGYGHGLLWAAQALAD-DSDGL 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V+ V E LR + + VL G + + +L PV+ QL + Sbjct: 58 AVSQVCEARALRAAGFEGALLVLQGPRDLSEVHACTEFDLQPVLHHSAQLDHLE--AASV 115 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 V ++++TG NRLG +A ++H+ACAD+P N+ Q Sbjct: 116 VLPVVWIKLNTGMNRLGFEPAQAPKVATRLQAAGHGQGGLHWMTHMACADEPEHPQNARQ 175 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQ----LTRPGISLYGGTD--------KI 226 L+ F T ++ + G + S++ RPGI LYG Sbjct: 176 LDAFATTVAAFPGHRSVANSAALFAGWGRGGAAAGEYWGRPGIMLYGAHPASVPAEHLPE 235 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ +T +A II + G V YG + + A+GYADGYP Sbjct: 236 GPDGDLRPAMTVQAPIIATQPLAPGSTVGYGATWTADAPGRVGIVAMGYADGYPRHA--- 292 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 G + G + P++G+++MDM D++ + +VGD + ++G + ++ V Sbjct: 293 --------PSGTPVLVNGELCPLIGRVSMDMLAVDLSGVPAAQVGDRVTLWGEGLPVERV 344 Query: 347 ALASGTTNYDLLVRIGTRY 365 A A+GT +Y+LL R+ R Sbjct: 345 ARAAGTISYELLTRVADRL 363 >gi|262281362|ref|ZP_06059143.1| alanine racemase 2 PLP-binding [Acinetobacter calcoaceticus RUH2202] gi|262257188|gb|EEY75925.1| alanine racemase 2 PLP-binding [Acinetobacter calcoaceticus RUH2202] Length = 367 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 143/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R I +L GI P L I S Q+ + K Sbjct: 61 LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVQKHPYPAK-FD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 ICLKMNSGMNRLGFKPQHYVQAWERLNNLANVSKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F +I G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEDIIKDLPGERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ A E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLDANESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T + +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIENAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|325675498|ref|ZP_08155182.1| D-alanine racemase [Rhodococcus equi ATCC 33707] gi|325553469|gb|EGD23147.1| D-alanine racemase [Rhodococcus equi ATCC 33707] Length = 414 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 167/380 (43%), Gaps = 28/380 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL A+ +N + +G A AVVK +AY G +A A AG + VT++ Sbjct: 38 AEAVIDLDAVAHNIGILREHAGGATVMAVVKADAYNHGAVPVARAALAAGAGELGVTTLA 97 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 EG++L+ A + + +SS + G + Sbjct: 98 EGLELKNAGITAPVLSWLHTADSDFAPAVAAGVELGLSSPRHLAAVAAAARQVGTAATVT 157 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG NR G+S +E DF + + + + SHLA AD+P V Q ERF Sbjct: 158 VKVDTGLNRNGVSREEWTDFLKDLARVEAEGAVRFKGVFSHLAHADEPHHPVIDDQRERF 217 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 + + + I A L++S+ L P+ F + RPGI++YG + + + ++ V+ Sbjct: 218 TSALEDAERIGLVPEAAHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPDLGTFGLRPVM 277 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +R+ L++K AGE VSYG D+ +A+ +GYADG P L G Sbjct: 278 TFRSRVALVKKVAAGEGVSYGHTWVAPHDTTVALLPVGYADGIPRALGGRF--------- 328 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPD------IKLDDVALA 349 + ++ P +G++ MD + D+ D + GD FG D A A Sbjct: 329 --EVWLGDDRRPGIGRVCMDQVVVDLGPDGAGVREGDTAVFFGDGDGDRGVPHAQDWADA 386 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y+++ + R + Y Sbjct: 387 LDTIHYEVVTSVRGRTIRTY 406 >gi|78189593|ref|YP_379931.1| alanine racemase region [Chlorobium chlorochromatii CaD3] gi|78171792|gb|ABB28888.1| alanine racemase [Chlorobium chlorochromatii CaD3] Length = 366 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 92/371 (24%), Positives = 156/371 (42%), Gaps = 25/371 (6%) Query: 11 IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L L+ N ++ A L+G A +VK NAYG +A L G+ +F V ++ E + Sbjct: 6 ISLEHLRGNVRALQAHLNGRAHIMGIVKANAYGHNVHFVASTLETCGIHNFGVANIHEAL 65 Query: 70 KLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 +L+ A I P + + + + + Sbjct: 66 ELKQGGALQKPATIIAFASPLPSHLPYFIEHGITMTLCDHATFVAARDIAAALERPLQVH 125 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++D+G RLG++ EA+ +L+ + +H A + + QL F+T+ Sbjct: 126 VKIDSGMGRLGVAPHEAMALLQAVDASPFLELTGVYTHFADS-ATPNSFTHQQLAIFKTI 184 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTA 238 + Y+ I A+S +L + RPGI LYG +Q V+ Sbjct: 185 AAEYEHAAQRTICKHTANSGALLSLQASWCDMVRPGILLYGYHPSQECPTQLNVQPVMQV 244 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +A+++ I+K AG +SY + + IA A GYADGY LS Sbjct: 245 QAKVMFIKKVAAGTSISYNRTWQAPTERFIATIAAGYADGYHRLLSN-----------NA 293 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDL 357 I G P +G +TMD M D+ S S++VGD +FG D + +++A + T +Y++ Sbjct: 294 AVLINGKRYPQVGTVTMDQIMVDLGSSHSVQVGDSAVLFGWDTLSANELAAQAHTISYEM 353 Query: 358 LVRIGTRYAKF 368 L + R + Sbjct: 354 LCAVSARVKRR 364 >gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A] gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A] Length = 849 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+++L A+ +N + +L + ++K +AYG G +IA L + V V +E Sbjct: 490 LEVNLNAIVDNLNWYRSLMKPQTKLVCMIKADAYGAGSVEIAKTLQDHRVDYLAVAVADE 549 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHPYA 125 GV LR + ++ K +FD +L P + S L K P Sbjct: 550 GVTLRKNGITNNVMIMNPEMSS-FKTLFDFDLEPEVYSFRLLEALIKAAEKEGITGFPVH 608 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLA-CADDPSSHVNSVQLERFR 183 +++DTG +RLG ++ + H + + SH D +S Q F+ Sbjct: 609 IKIDTGMHRLGFDPVKDIDELIHRLQKQSAIIPRSVFSHFVGSDSDSFDDFSSQQFALFK 668 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + +S+GI P + R G+ LYG + NK + + Sbjct: 669 QGADKLQGAFPHKILFHMDNSAGIEHFPYRQMDMCRLGLGLYGINPRSNKCFNTISEL-- 726 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ IR G+ V Y + ++ DS+IA IGYADG L G Sbjct: 727 KTTILQIRSVPKGDTVGYSRKGVISHDSMIAAIPIGYADGLNRHLGNRR----------G 776 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G I MD+ M D+T + GD ++IFG ++ + ++ T Y++L Sbjct: 777 YCLVNGKKAEYVGNICMDVAMIDVTGI-DCKEGDQVEIFGKNLPVTVLSDILDTIPYEVL 835 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 836 TNVSNRVKRVY 846 >gi|16762331|ref|NP_457948.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143819|ref|NP_807161.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052147|ref|ZP_03345025.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427047|ref|ZP_03359797.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289830029|ref|ZP_06547478.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20137366|sp|Q8Z300|ALR3_SALTI RecName: Full=Alanine racemase 3 gi|25291653|pir||AD0937 alanine racemase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504635|emb|CAD09518.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139455|gb|AAO71021.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 368 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 107/360 (29%), Positives = 171/360 (47%), Gaps = 15/360 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + P+++SV Q +T+ + + P +Q+ Sbjct: 76 LRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG++ ++ + IISHLA AD P +N Q + Sbjct: 136 DSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAKKA 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 196 FPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQDV 254 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G + YG TR IA + GYADG P L +G +P Sbjct: 255 PVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL-----------RPPAGVCWRGVRLP 303 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +LG++ MD M D + + GD ++ G L++VA A T Y+++ R+G R+ + Sbjct: 304 VLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFRRI 362 >gi|302670570|ref|YP_003830530.1| alanine racemase Alr [Butyrivibrio proteoclasticus B316] gi|302395043|gb|ADL33948.1| alanine racemase Alr [Butyrivibrio proteoclasticus B316] Length = 387 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 158/386 (40%), Gaps = 36/386 (9%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66 +ID+ A+K N SM R AVVK +AYG G +IA +L N + + V + E Sbjct: 10 ARIDIDAIKYNLESMRKNIPDGTRIMAVVKTDAYGHGATRIALSLENVDYIWGYAVATAE 69 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS----- 121 E +LR I VL P + + + P + + S V Sbjct: 70 EAFELRDAGAIKPILVLGYTFPYAYRRMLLEGVRPSVFRMDMAQELSDCGQELVDSGELT 129 Query: 122 --HPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + VDTG +R+G++ E DF N Q+ I +H A AD+ + Sbjct: 130 ELPCVHIAVDTGMSRIGVTPDEKGADFVSKVMNMPGIQVEGIFTHFARADEADLSNARER 189 Query: 179 LERFRTLISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 + F + + A+S+ I+ P + R G+++YG + + Sbjct: 190 EKVFADFVKSVEETTGKKIPLHHCANSASIISVPESSMDMVRAGVTMYGMWPSEDVPRDI 249 Query: 233 ---QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + + I++I++ AG VSYGG + + IA +GY DGYP +LS Sbjct: 250 VSLKPTMELISHIVMIKEVPAGTPVSYGGTYVTDKPTKIATIPVGYGDGYPRSLSN---- 305 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF------GPDIKL 343 G I G+ I+G++ MD M D+TD + GD + + G +I Sbjct: 306 -------KGYVLINGHHANIIGRVCMDQFMVDVTDIHYVLEGDEVVLLGRDKNTGEEISA 358 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 + + SG NY+L R + + Sbjct: 359 ELLGEMSGRFNYELTCDFNKRIPRVF 384 >gi|198284522|ref|YP_002220843.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666734|ref|YP_002427188.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254802357|sp|B7J911|ALR_ACIF2 RecName: Full=Alanine racemase gi|254802358|sp|B5EP95|ALR_ACIF5 RecName: Full=Alanine racemase gi|198249043|gb|ACH84636.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518947|gb|ACK79533.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 364 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 156/371 (42%), Gaps = 19/371 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL++N + + AR A VK NAYG G AP L AGV F V S Sbjct: 3 RPIVADISAAALRHNVAVVREHAPRARIMAAVKANAYGHGVTLCAPVLAEAGVDAFAVAS 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE L + I +L G E + ++ + + + + + Sbjct: 63 LEEAEALHALGLERPICLLGGPFDADEVSVAAERAYLLVIHEQRQLQWLETRAADAALRL 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VDTG +RLG + + ++ ++SHLA +D P N Q F Sbjct: 123 FIKVDTGMHRLGFAPERLPALFAALQRHPRWEVLGLMSHLARSDTPDDPFNRQQAGVFAD 182 Query: 185 LISHYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTA 238 I+H + + SLA+S G+L P H RPG+ LYG + + +Q V++ Sbjct: 183 AIAHVGHVTAGQHSLANSGGVLALPFTHQYWVRPGLMLYGLSPFAGRRGSEIGLQPVLSW 242 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + ++ IR+ G+ + YG + + V A GY DGYP L G Sbjct: 243 RSAVVAIRELGPGDWLGYGAAWQAPARCRVGVVAAGYGDGYPRHLG-----------CGA 291 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDL 357 + G L +++MDM D+T ++G + + G L+ +A GT +Y++ Sbjct: 292 PVTVAGQTTRTLARVSMDMLFVDLTAV-EADIGAPVVLMGAGGPPLESLAAELGTISYEM 350 Query: 358 LVRIGTRYAKF 368 R+ R + Sbjct: 351 SCRMQMRVPRR 361 >gi|291542822|emb|CBL15932.1| alanine racemase [Ruminococcus bromii L2-63] Length = 710 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 167/374 (44%), Gaps = 29/374 (7%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++IDL L++N ++ + AVVK AYG G +I+ L GV+ F V +++E Sbjct: 345 IEIDLNNLEHNVKTLRKAMPPKCELMAVVKAQAYGHGAYEISTHLEKIGVRAFAVATIDE 404 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G+ LR Y + I +L + + NLI ++ + + L GV ++ Sbjct: 405 GISLRKYGIRGEILILGYTSIDRASELKKYNLIQ---TLISFEYANALNRQGVMVNAHIK 461 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--VNSVQLERFRTL 185 +DTG +RLG+ + LD K L + Q++ F L Sbjct: 462 IDTGMHRLGIPSADFLDVEKVFTMKNLNVCGIFTHLCCSDSSMPDDIAFTRGQIDGFYNL 521 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVV 236 I H K + + SS G L P R G++LYG D ++ V+ Sbjct: 522 IDHLKKTGINIPKLHIQSSYGFLNYPELKCSYVRTGVALYGVKSLPDDNTELLLDLRPVL 581 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + ++R++LIR+ G+ V YG R+S IA+ IGY DG+P +LS Sbjct: 582 SLKSRVVLIRQIEKGDSVGYGRSFVAERNSRIAILPIGYGDGFPRSLSNG---------- 631 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 G+ I Y+VP++G+I MD DITD+ I GD + D+ D VA S + Sbjct: 632 NGRALIGQYIVPVIGRICMDQLAIDITDAEGIAAGDIATLIDTDGCTDLSADVVAKNSNS 691 Query: 353 TNYDLLVRIGTRYA 366 + +LL R+G R Sbjct: 692 ISNELLCRMGERLP 705 >gi|293380353|ref|ZP_06626424.1| alanine racemase [Lactobacillus crispatus 214-1] gi|290923036|gb|EFD99967.1| alanine racemase [Lactobacillus crispatus 214-1] Length = 376 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 143/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A++ N M L+ + AVVK NAYG G ++A G V Sbjct: 6 HRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++E ++LR I VL + P I N+ I ++ L K + + Sbjct: 66 AILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 + VD+G R+G + E + + +H A AD Q+E Sbjct: 126 LKVHIGVDSGMGRIGFNEDEDFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQVE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + + R GI +YG N P Sbjct: 186 KFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSSIS 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ E+ + ++ G+ V YG +D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347 K + PI+G+I MD M + + + G + I D + A Sbjct: 301 -------KVKLGDEYCPIVGRICMDQFMVKMPKKMPL--GTKVVIISNDPTAPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|164688105|ref|ZP_02212133.1| hypothetical protein CLOBAR_01750 [Clostridium bartlettii DSM 16795] gi|164602518|gb|EDQ95983.1| hypothetical protein CLOBAR_01750 [Clostridium bartlettii DSM 16795] Length = 389 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 162/385 (42%), Gaps = 36/385 (9%) Query: 6 FLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++IDL+ K+N + L + + VVK NAYG G +A + G++ F V Sbjct: 18 RAWVEIDLSKFKHNIEVIKELLHDDVQIVGVVKANAYGHGDVVVAKYFESLGIKYFAVAC 77 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE +KLR + I +L Q+ + +L +++ + +L + Sbjct: 78 IEEAIKLREGGIKGDIIILGWTPSCQKDDLIKYDLCQTLANE---AYAEELSKLPGTVRG 134 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLER 181 ++++TG NRLG +E +D + ++ I SHL+ +D Q+ Sbjct: 135 YVKLNTGMNRLGE-PKEHMDLIEKIYTLDNIKVEGIFSHLSRSDSKLEADIVFTKQQIAN 193 Query: 182 FRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYG--------GTDKINK 228 F +I+ K L +S GI+ + H+ L RPGI LYG D + Sbjct: 194 FDYVINKLKADGFELGNVHLQNSYGIVTYRDLHYDLARPGIILYGVPSDPLDDTLDNLPN 253 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ ++ +++ G+ V YG T +A IGYADG +S D Sbjct: 254 GMKFEAPLSLRCKVAMVKDVTPGQSVGYGNNFTATETIKVATVTIGYADGLSRLVSKKDM 313 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 K + G +G + MD M D++ ++ GD + + G D + ++ Sbjct: 314 ----------KVLVNGKYARQIGNVCMDQMMIDVSGI-DVKEGDTVTLIGQDGDNYLSVN 362 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 ++L S T + L IG R + Y Sbjct: 363 QISLLSNTITNETLSVIGERVKRVY 387 >gi|326794048|ref|YP_004311868.1| alanine racemase [Marinomonas mediterranea MMB-1] gi|326544812|gb|ADZ90032.1| Alanine racemase [Marinomonas mediterranea MMB-1] Length = 373 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 162/377 (42%), Gaps = 25/377 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+ IDL A+K N+ L + AVVK +AYG G +A L + V F V + Sbjct: 3 RPLKAIIDLEAIKINYQFSKKLHPTCKALAVVKSDAYGHGAVDVATYLDD-DVDAFAVAA 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR + I +L G+ E + + + + + Sbjct: 62 IEEALQLREADVTSPILLLEGVFEQNEWPLCEELGFWCVIENTTQLDGLLNAQSKIEKVF 121 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +DTG +RLGL+ + L + ++++H +CADD SS QL F Sbjct: 122 VK-LDTGMHRLGLNSLQVEHVVDTLKASGLVEEVVLMTHFSCADDLSSLETIKQLTLFEE 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEAR 241 + S+A+S+ I+ RPGI LYG + + ++ + ++ Sbjct: 181 ANRTVGHLTTSVANSAAIMKWSVPEGGWIRPGIMLYGISPFVGVTGTQLGLKPAMQLVSK 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R G+ V Y Q IA A+GY DGYP + G Sbjct: 241 VISVRDVNIGDTVGYSQQYTAEHPHQIATVAVGYGDGYPRSSEN-----------GTPVA 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS---------IEVGDYIQIFGPDIKLDDVALASGT 352 + G + G+++MDM +++ S I++G+ ++++G + +++VA SGT Sbjct: 290 LSGDTAELAGRVSMDMITVKLSNQASSERPHQERKIQLGEEVELWGEQVPVEEVAYRSGT 349 Query: 353 TNYDLLVRIGTRYAKFY 369 Y+L+ R+ R + Y Sbjct: 350 IGYELVTRMTQRPMREY 366 >gi|113953241|ref|YP_729636.1| alanine racemase [Synechococcus sp. CC9311] gi|113880592|gb|ABI45550.1| alanine racemase [Synechococcus sp. CC9311] Length = 393 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 107/379 (28%), Positives = 165/379 (43%), Gaps = 26/379 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + L++ +A++ N S+ L + AVVK + YG G E +A A G F V Sbjct: 23 RQRAWLEVSDSAIEANARSLKRHLGPHCDLMAVVKADGYGHGAETVAKASVRGGATSFGV 82 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +++EG+ LR + VL P + L+P +SS+ + L G Sbjct: 83 ATLQEGIDLRNAGLDQPVLVLGHLSQPDDLRACLQWRLMPTLSSMREALLCQNLADSSGR 142 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNS 176 P L+VDTG RLG ++ H LS I SHLA AD V Sbjct: 143 RFPVQLKVDTGMTRLGCDWKDGKRLAHAIQQLDQLSLSGIYSHLALADGERDGPAAQVTK 202 Query: 177 VQLERFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPM 232 +Q +RF ++ ++ LA+S+G L H L R G++LYG + + Sbjct: 203 LQEDRFESITRELRSPTLKRHLANSAGTLRDTGLHHDLVRVGLALYGHCPSEHLDGILNL 262 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ +A++ LIR+ AG VSYG + R S +AV +IGYADG LSG Sbjct: 263 EPAMSVKAKVSLIREVPAGVGVSYGHRFVTQRPSRLAVVSIGYADGVSRCLSGRI----- 317 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G +P +G ITMD + D T+ +E GD + + G D I A Sbjct: 318 ------HALHAGQTLPQVGAITMDQLILDATEHRGLESGDVVTLLGRDGEETISPRTWAQ 371 Query: 349 ASGTTNYDLLVRIGTRYAK 367 + + +++L R + Sbjct: 372 LADSIPWEVLCSFKHRLPR 390 >gi|123969267|ref|YP_001010125.1| alanine racemase [Prochlorococcus marinus str. AS9601] gi|123199377|gb|ABM71018.1| putative Alanine racemase [Prochlorococcus marinus str. AS9601] Length = 399 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 178/382 (46%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ AL+ N ++ LS N + AVVK + YG + ++ G V Sbjct: 26 QRAWIEVRGKALETNVRNLRSKLSKNCQFMAVVKADGYGHDAKVVSEYAIRGGASQLGVA 85 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 +++EGVKLR + + I +L ++ I F +L+P ISS+ + + + G+ Sbjct: 86 TLKEGVKLRSFGVKKPILILGNLYTKRDLIISFKNDLMPTISSIRECLICNNIGKQFGLK 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177 L+VDTG +RLG + + + + I SHL+ AD+ + + Sbjct: 146 FSLHLKVDTGMSRLGFEYSRFIQNFEKIKSFENILIEGIYSHLSSADEDNALDPKSITQL 205 Query: 178 QLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q +F + I+ LA+S+ +LL ++HF + R G+S+YG + KI+K+ Sbjct: 206 QRLKFNELLKQINLDRNNEIKIHLANSAAMLLNKDFHFNMVRVGLSMYGYSPLTKIDKNL 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + + ++ IR G VSYGG+ R + +AV +IGYADG P LSG Sbjct: 266 SLEPALFLKVKVAFIRTIEPGVNVSYGGKFVSCRKTKLAVLSIGYADGVPRNLSGKI--- 322 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 K K + P +G ITMD M DIT S I+VG + + G D I D Sbjct: 323 --------KVIYKNKLYPQVGSITMDQMMVDITGSNEIKVGSTMILLGSDGDKTITPIDW 374 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A S T +++L R + Sbjct: 375 AKESDTIPWEILCSFKNRLPRV 396 >gi|169797698|ref|YP_001715491.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii AYE] gi|213155508|ref|YP_002317553.1| alanine racemase [Acinetobacter baumannii AB0057] gi|215485052|ref|YP_002327293.1| alanine racemase [Acinetobacter baumannii AB307-0294] gi|301346049|ref|ZP_07226790.1| alanine racemase [Acinetobacter baumannii AB056] gi|301511955|ref|ZP_07237192.1| alanine racemase [Acinetobacter baumannii AB058] gi|301596084|ref|ZP_07241092.1| alanine racemase [Acinetobacter baumannii AB059] gi|332853589|ref|ZP_08434841.1| alanine racemase [Acinetobacter baumannii 6013150] gi|332869280|ref|ZP_08438691.1| alanine racemase [Acinetobacter baumannii 6013113] gi|169150625|emb|CAM88534.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii AYE] gi|213054668|gb|ACJ39570.1| alanine racemase [Acinetobacter baumannii AB0057] gi|213988697|gb|ACJ58996.1| alanine racemase [Acinetobacter baumannii AB307-0294] gi|332728553|gb|EGJ59926.1| alanine racemase [Acinetobacter baumannii 6013150] gi|332732837|gb|EGJ64051.1| alanine racemase [Acinetobacter baumannii 6013113] Length = 367 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKT--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++R I +L G+ P L I S Q+ + + Sbjct: 61 LEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLVNVAKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLSIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|332528049|ref|ZP_08404082.1| alanine racemase [Rubrivivax benzoatilyticus JA2] gi|332112622|gb|EGJ12415.1| alanine racemase [Rubrivivax benzoatilyticus JA2] Length = 362 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 148/375 (39%), Gaps = 29/375 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + + AL +N A + +AR AVVK NAYG G E+ L G F + Sbjct: 3 RPIEALVHVPALAHNLQRARAQAPDARVWAVVKANAYGHGIERAYDGLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E +LR + I +L G+ P ++ +L + Q+ + + H Sbjct: 61 LDEAERLRTLGWRGPILLLEGVFEPRDLELCSRLDLWHAVHCDEQIDWLAAHK-THRPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + I+H + AD P + Q+ F Sbjct: 120 VFLKMNSGMNRLGFTPAAFRGAWARLGALPQVDEISAITHFSDADGPRGI--AHQIAAFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV----VTAE 239 G E L++S+ +L R GI LYG + +T Sbjct: 178 AATQDLPG-ERCLSNSAALLRH-GVKNDWVRAGILLYGSAPDFPEHDIAHWDLQPTMTLR 235 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +RII + AG+ V YG + + A GYADGYP G Sbjct: 236 SRIIATQTLAAGDTVGYGSSFTAPGPMRVGIVACGYADGYPRLC-----------PTGTP 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI-----KLDDVALASGTTN 354 + G +G+++MDM D+++ +G + ++G +D+VA A+GT Sbjct: 285 ALVNGRRTRTIGRVSMDMLEVDLSELPDAGIGSEVTLWGRGPGGSVLPIDEVARAAGTIG 344 Query: 355 YDLLVRIGTRYA-KF 368 Y+L+ + R + Sbjct: 345 YELMCAVAPRVTMRV 359 >gi|169632127|ref|YP_001705863.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii SDF] gi|226711023|sp|B0VNF6|ALR_ACIBS RecName: Full=Alanine racemase gi|169150919|emb|CAO99526.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter baumannii] Length = 367 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EE ++R I +L G+ P L I S Q+ + + Sbjct: 61 LEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G +RLG Q + N + H + AD Q+ Sbjct: 120 VFLKMNSGMSRLGFKPQHYVQAWERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301] Length = 789 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 157/371 (42%), Gaps = 22/371 (5%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L++DL A+ +N + + R A+VK +YG G ++A L + GV V +E Sbjct: 428 LEVDLDAMIHNLNYFRSKLDFRTRLVAMVKAGSYGAGDFEVAQMLQHQGVDYLAVAFADE 487 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126 GV LR + VL +++I + + S F + G + P + Sbjct: 488 GVLLRERGITMPVVVLNADADSFDQMIANRLEPEIYSFRSLADFADAVSHAGETRYPVHI 547 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTL 185 ++DTG +RLG E +++ + SHL CAD P Q+ R+ + Sbjct: 548 KLDTGMHRLGFMEGEIGRLCEVLPTLPAVKVASVFSHLNCADMPGEDAYTREQIARYDRM 607 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + A+S+ I P F + R G+ LYG N + + + Sbjct: 608 SAAVAASLPYSVIRHTANSAAIERFPEARFDMCRLGLGLYGFGWVHNAGLRPVSAL--KT 665 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI+ I++ AG+ V YG KL R ++ A IGYADG L Sbjct: 666 RIVQIKRLEAGDAVGYGRAGKLLRPTVTATVPIGYADGLDRHLGCGRWS----------M 715 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDVALASGTTNYDLL 358 + G PI+G++ MD M DITD + GD + +F + L+ +A T Y+++ Sbjct: 716 RVAGRPAPIVGRVCMDSCMIDITDIPGVGEGDEVTVFSAEPGNDLETMARVLDTIPYEIM 775 Query: 359 VRIGTRYAKFY 369 + +R + Y Sbjct: 776 TSVSSRVKRIY 786 >gi|291087150|ref|ZP_06345528.2| alanine racemase [Clostridium sp. M62/1] gi|291075783|gb|EFE13147.1| alanine racemase [Clostridium sp. M62/1] Length = 414 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 96/384 (25%), Positives = 153/384 (39%), Gaps = 37/384 (9%) Query: 11 IDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I L ++ N + A L VVK + YG G + A A V + V + +E + Sbjct: 20 IHLDRIEQNMKEIAAGLPEGTAVIGVVKADGYGHGAAETA-AAIEPYVSGYAVATADEAL 78 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128 +LR + VL + + + + ++ PVI +SKL G+ L V Sbjct: 79 ELRKSGVSLPVLVLGSVRDSRFRELLAADVRPVIFEEETAEAFSKLAGEAGIRGSVHLAV 138 Query: 129 DTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 D G +R+GL +E+L+ + + + +H AD+ V Q E FR + Sbjct: 139 DAGMSRIGLKPSEESLEMIDRISSLPGLFIEGLFTHFPRADEEDKAVTKRQFEDFRNFAA 198 Query: 188 H-----------YKGIEASLASSSGIL---LGPN-YHFQLTRPGISLYGGTDKINKSHPM 232 K + +S+GI+ P R GI +YG Sbjct: 199 QVSELLTKKEQGRKKLICHCMNSAGIIDSHRMPEGMEMDAVRAGICIYGLYPSGEVDRNR 258 Query: 233 Q---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ I I++ G VSYGG R +A GY DGYP LSG Sbjct: 259 IRLLPAMELKSYITYIKEIEPGTAVSYGGTFVARRPMRVATVCAGYGDGYPRGLSGR--- 315 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 G+ I+G ILG+I MD M D+T+ E D + + G +I +++ Sbjct: 316 --------GEVLIRGKRAKILGRICMDQFMADVTEIPEAEKWDTVTLVGRDGKEEITMEE 367 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A G +Y++ IG R + Y Sbjct: 368 LAAQCGGFHYEIPCLIGKRVPRIY 391 >gi|331090918|ref|ZP_08339761.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA] gi|330405472|gb|EGG85005.1| alanine racemase [Lachnospiraceae bacterium 2_1_46FAA] Length = 369 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 171/377 (45%), Gaps = 31/377 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+IDL +K N + + + AV+K NAYG G + L G+ F V + Sbjct: 2 RAWLEIDLEKIKWNVNCLRNMMPSGCEMMAVIKANAYGHGAVPVGKMLNGMGIYSFAVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V+EG++LR I +L + + + +LI ++ + ++ CG S Sbjct: 62 VDEGIELRENGIIGDILILGYTDLKRMEEVVRYDLIQ---TIVDERYGEEMNKCGFSIQA 118 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLER 181 L++D+G +RLG+ L E ++ T FN + ++ + +HL +D Q+E+ Sbjct: 119 ELKIDSGMHRLGV-LAENIEETEKVFNLQNLRIKGMFTHLYESDSLEKEAVEKTEKQIEK 177 Query: 182 FRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPM 232 F L+ + K + + SS G+L P + R GI+L+G DK P+ Sbjct: 178 FDRLVDNLKQRGIVIPKLHIQSSYGLLNYPQLQYDYVRIGIALFGVLSSKQDKTKVKLPL 237 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q ++ +A + +R+ +GE Y G D IA +IGYADG P LSG Sbjct: 238 QPALSLKALVTSVREIKSGETAGYSGAYHAEADRKIAAVSIGYADGIPRNLSGT------ 291 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 K + G I+GKI MD + D+T + GD + + G ++ + D+A Sbjct: 292 ----NNKVIVHGQKTSIIGKICMDQLLIDVTMIKDVRAGDTVTLIGREGEEEVSVLDMAD 347 Query: 349 ASGTTNYDLLVRIGTRY 365 +GT ++ R+G R Sbjct: 348 KAGTIANEIFSRLGKRL 364 >gi|315082997|gb|EFT54973.1| alanine racemase [Propionibacterium acnes HL027PA2] Length = 375 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V +V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I P + + + L SK G++ + Sbjct: 70 GQELVEAGIPLPILKPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|227878363|ref|ZP_03996318.1| alanine racemase [Lactobacillus crispatus JV-V01] gi|227862042|gb|EEJ69606.1| alanine racemase [Lactobacillus crispatus JV-V01] Length = 376 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 142/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A++ N M L+ + AVVK NAYG G ++A G V Sbjct: 6 HRPAVVKVNLGAIRRNIKNEMKHLATGQKMLAVVKANAYGHGAVEVAKIAIEEGAAGLCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++E ++LR I VL + P I N+ I ++ L K + + Sbjct: 66 AILDEALQLRHADIVKPILVLGVVSPEYAPIAAANNVSLTIPNLEWLKEAEKYLEKEQLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 + VD+G R+G + E + + +H A AD Q+E Sbjct: 126 LKVHIGVDSGMGRIGFNEDEDFIAANKFLQNNDNFYVEGMFAHFASADSADDTYFKHQVE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + + R GI +YG N P Sbjct: 186 KFAHMRSLLTVKPKWIHVDNTAASIFNKDVPSDCVRFGIGIYGLNPSSNPDSPDLKSSIS 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ E+ + ++ G+ V YG +D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHEGDGVGYGSTFVADQDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347 K + PI+G+I MD M + + + + I D + A Sbjct: 301 -------KVKVGDEYCPIVGRICMDQFMVKMPKKMPLR--TKVVIISNDPTAPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|238854498|ref|ZP_04644836.1| alanine racemase [Lactobacillus jensenii 269-3] gi|260664819|ref|ZP_05865670.1| alanine racemase [Lactobacillus jensenii SJ-7A-US] gi|313472625|ref|ZP_07813114.1| alanine racemase [Lactobacillus jensenii 1153] gi|238832851|gb|EEQ25150.1| alanine racemase [Lactobacillus jensenii 269-3] gi|239529422|gb|EEQ68423.1| alanine racemase [Lactobacillus jensenii 1153] gi|260561302|gb|EEX27275.1| alanine racemase [Lactobacillus jensenii SJ-7A-US] Length = 375 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 152/383 (39%), Gaps = 32/383 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +++DL A+K N A L + AVVK NAYG G K+A G + F V Sbjct: 6 HRPAEVEVDLLAIKKNLQEEKAHLKPGQKLFAVVKANAYGHGAVKVAKMAARNGAEGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121 ++E +LR + I VL G+ P E I + I + + + + Sbjct: 66 AVLDEAFELRDSSIVDPILVL-GVTPANEACIAAAHNISLTAPSLEWLEAADKALAKKDM 124 Query: 122 -HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQL 179 L +D+G R+G S + + + + +H A AD SH Q+ Sbjct: 125 VLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNSTHFIVEGMFTHFASADSRDSHYFDYQV 184 Query: 180 ERFRT--LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----- 232 +RF I K +A+++ + N H + R GI LYG N + P Sbjct: 185 KRFNHLKNILSIKPKWIHVANTASSIFDKNIHSDIVRFGIGLYGLNPSSNPASPDLESEI 244 Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + ++ + + ++K +G + YG D I +GYADG LSG Sbjct: 245 NLKPALSLVSELSFVKKVHSGYGIGYGSTYVADSDQWIGTVPVGYADGVIRKLSGF---- 300 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDV 346 K + + PI+G+I MD M + + + + G + I+ + + + Sbjct: 301 --------KIKVGAHYCPIVGRICMDQLMVLLPEKMPV--GTKVVIYSNNPEDPNFIKKA 350 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A T +Y+L + R + Y Sbjct: 351 ADYVDTIHYELACLLSDRLPRIY 373 >gi|315037507|ref|YP_004031075.1| alanine racemase [Lactobacillus amylovorus GRL 1112] gi|325955971|ref|YP_004286581.1| alanine racemase [Lactobacillus acidophilus 30SC] gi|312275640|gb|ADQ58280.1| alanine racemase [Lactobacillus amylovorus GRL 1112] gi|325332536|gb|ADZ06444.1| alanine racemase [Lactobacillus acidophilus 30SC] gi|327182803|gb|AEA31250.1| alanine racemase [Lactobacillus amylovorus GRL 1118] Length = 376 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 145/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A++ N + M L + AVVK NAYG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIRRNLENEMKHLEPGQKMLAVVKANAYGHGAVEVAKVADEVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 ++E ++LR I VL + P I + + ++ L K + + Sbjct: 66 AILDEALQLRHNDIVKPILVLGVVSPEYAPIAAVNGVSLTVPNLEWLKEAEKYLEKDNLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLE 180 L +D+G R+G + E + + +H A AD Q++ Sbjct: 126 LKIHLGIDSGMGRIGFNEDEDFIAANKFLENNDNFFVEGMFAHFASADSSDESYFERQIK 185 Query: 181 RFRTL--ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +FR + + K + +++ + L R GI +YG P Sbjct: 186 KFRHMESLLTVKPKWIHIDNTAASIFHSGIKSDLVRFGIGIYGLNPSSTPDTPDLKPAFK 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ E+ + ++ G+ VSYG D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHKGDGVSYGSTFVADEDTIIGTVPVGYADGWIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347 K + I+G+I MD M + + + + G ++I D + A Sbjct: 301 -------KVKVGDKYCTIVGRICMDQFMVKMPEKMPV--GTKVEIISADPTAPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|328463455|gb|EGF35106.1| alanine racemase [Lactobacillus helveticus MTCC 5463] Length = 376 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 143/381 (37%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +K++L A++ N M L N + AVVK N YG G ++A G F V Sbjct: 7 RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 67 ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQL 126 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +D+G R+G + E + N + + +H A AD Q E+ Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEK 186 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232 F+ + S + +++ + L R GI +YG N S P Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 247 EPALSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 K + PI+G+I MD M + + + G + I + + A Sbjct: 301 ------KVKVGDEYCPIVGRICMDQFMVKMPKKMLV--GTKVVIISNNPSDPNNIKAAAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373 >gi|90020561|ref|YP_526388.1| alanine racemase [Saccharophagus degradans 2-40] gi|89950161|gb|ABD80176.1| alanine racemase [Saccharophagus degradans 2-40] Length = 409 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 117/371 (31%), Positives = 190/371 (51%), Gaps = 22/371 (5%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +L I+L A+ NW + + A V K +AYGLG +++APALY AG +DFFV ++ Sbjct: 46 KLTINLDAIAANWRLIQSRLAAGARAGAVVKADAYGLGVQEVAPALYRAGCRDFFVANLA 105 Query: 67 EGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + +R A++ VL G P +E ++PVI+S + + Sbjct: 106 EALLVRSLLAGDAQVIVLSGCAPREESEFVRNGIVPVITSATMAERWLGVKGASK-CGAV 164 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L+V++G RLGL E + N +++SHLACAD +N+ QL+RF + Sbjct: 165 LKVNSGMGRLGLEPNEFESLLMHP-NFANAGFFMLMSHLACADQFDHPLNAAQLQRFERM 223 Query: 186 ----ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + ASLA+SSGI + P++H+ + RPG++LYGG + +PM+ VV Sbjct: 224 RQAFLKKVPAATASLANSSGIFISPSFHYDVARPGVALYGGNPLQRRQNPMRKVVDLRLP 283 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ +R +GE V YG R S++ A GYADG + GG + Sbjct: 284 VLQVRHLASGEAVGYGASFITQRPSVLLTLAGGYADGLFRSA-----------AAGGVVY 332 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSI---EVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + +PI+G+++MD + D TD G+ +++ G ++ +DD+A A+GT Y++L Sbjct: 333 LGEKPLPIVGRVSMDSIVVDATDVPQAAMPAEGNMLELLGDNVGVDDLAAAAGTIGYEIL 392 Query: 359 VRIGTRYAKFY 369 +G RY + Y Sbjct: 393 TSLGGRYRREY 403 >gi|294630935|ref|ZP_06709495.1| alanine racemase [Streptomyces sp. e14] gi|292834268|gb|EFF92617.1| alanine racemase [Streptomyces sp. e14] Length = 391 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 156/373 (41%), Gaps = 32/373 (8%) Query: 17 KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76 + N ++ + A AVVK +AYG G + A A AG + EE + LR Sbjct: 2 RANVRALRERTPGAALMAVVKSDAYGHGAVRCARAAVAAGATWLGTATPEEALALRAAGI 61 Query: 77 ---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL-QVDTGF 132 QAR+ G + + ++ +S + L + DTG Sbjct: 62 APEQARVLCWLWTPGGPWREAVEADVDVSVSGLWALAEVRAAARAAGRPARVQLKADTGL 121 Query: 133 NRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTLISH- 188 R G + + + + L +++ + SH ACAD+P + QL+RFR + +H Sbjct: 122 GRNGCQPADWPELVAEALRAEAEGLIRITGLWSHFACADEPGHPSIAAQLDRFREMTAHA 181 Query: 189 ----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEA 240 + +A+S L P HF L R GI+LYG + ++ V+T A Sbjct: 182 ETRGVRPEVRHIANSPAALTIPESHFDLVRTGIALYGISPAPELGVPADFGLRPVMTLSA 241 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + L++ G +SYG ++ + + +GYADG P SG G Sbjct: 242 SLALVKHVPGGHGISYGHHYVTPGETTLGLVPVGYADGIPRHASGT-----------GPV 290 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYD 356 + G + G+I MD + D+ EVG +FGP + +D A A+GT Y+ Sbjct: 291 LVGGKWRTVAGRIAMDQFVVDLGGDEP-EVGARAVLFGPGDGGEPTAEDWAQAAGTIAYE 349 Query: 357 LLVRIGTRYAKFY 369 ++ RIGTR + Y Sbjct: 350 IVTRIGTRVPRVY 362 >gi|254525606|ref|ZP_05137658.1| alanine racemase [Prochlorococcus marinus str. MIT 9202] gi|221537030|gb|EEE39483.1| alanine racemase [Prochlorococcus marinus str. MIT 9202] Length = 399 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ AL+ N + LS N + AVVK + YG + ++ G V Sbjct: 26 QRAWIEVKGKALEINVRQLRTKLSKNCQFMAVVKADGYGHDAKVVSDYAIKGGASQLGVA 85 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 +++EG+KLR + + I +L ++ I F +L+P ISS+ + + + G+ Sbjct: 86 TLKEGIKLRSFGVKKPILILGNLYTKKDLIISFKNDLMPTISSIRECLICNNIGKHFGLK 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177 L+VDTG +RLG + + + + + I SHL+ AD+ + Sbjct: 146 FSLHLKVDTGMSRLGFESNKFVQQFEKIKSFENISIDGIYSHLSSADEDNALDPKSTTQL 205 Query: 178 QLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q +F + I+ LA+S+G+LL ++HF + R G+S+YG + KI+K+ Sbjct: 206 QRLKFNQLLKKINLDRNNEIKIHLANSAGMLLNKDFHFNMVRVGLSMYGYSPLAKIDKNL 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + + ++ IR G VSYGG+ +R + +AV +IGYADG P LSG + Sbjct: 266 LLKPALFLKVKVAFIRIIEPGVSVSYGGKFVSSRKTKLAVLSIGYADGVPRNLSGKIN-- 323 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + P +G ITMD M DIT S I +G + + G D I + Sbjct: 324 ---------VIHNNKLYPQVGSITMDQMMVDITGSNEIRIGSTMVLLGSDGDKTISPLEW 374 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A S T +++L R + Sbjct: 375 ATKSNTIPWEILCSFKNRLPRV 396 >gi|262375688|ref|ZP_06068920.1| alanine racemase [Acinetobacter lwoffii SH145] gi|262309291|gb|EEY90422.1| alanine racemase [Acinetobacter lwoffii SH145] Length = 370 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 151/376 (40%), Gaps = 27/376 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL +N + N++ AVVK NAYG G E++ AL G F Sbjct: 3 RPITAIIHQQALAHNLSVVRQCMPNSQVFAVVKANAYGHGIERVYAAL--HGADGFAFLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EEG +LR + + +L G+ + I S Q+ + + Sbjct: 61 IEEGTRLRALGCKKPLLLLEGVFALTDLFECAKHEMSFAIHSSHQVQWLKQFAEIVPDAQ 120 Query: 124 YALQ--VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQL 179 + + +++G NRLG Q+ + + ++H + AD Q Sbjct: 121 FDVFLKMNSGMNRLGFEPQQYAEIWQELHQLNNVRSITHMTHFSDADGERFGLDGIEHQH 180 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTV 235 F I ++G + S++ + H + R GI LYG + + +Q Sbjct: 181 FIFNKTIQGFEGKTSLSNSAAILRHHQTLHSDIVRSGIMLYGSSPDYPTHTIQDWNLQPS 240 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ + II I+ AG+ + YG + T+D I + A GYADGY Sbjct: 241 MSLRSEIIAIQMIQAGQSIGYGSKFIATQDMRIGIVACGYADGYQR-----------LSA 289 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALAS 350 G + LG+I+MDM D+T ++G + ++G + +D+VA +S Sbjct: 290 TGTPVLVDSIKTQTLGRISMDMLAVDLTALPHADIGSEVVLWGQSSQGVILPIDEVAASS 349 Query: 351 GTTNYDLLVRIGTRYA 366 GT Y+L+ + R Sbjct: 350 GTIGYELMCAVTARVH 365 >gi|299771998|ref|YP_003734024.1| alanine racemase [Acinetobacter sp. DR1] gi|298702086|gb|ADI92651.1| alanine racemase [Acinetobacter sp. DR1] Length = 367 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKTMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R I +L GI P L I S Q+ + K Sbjct: 61 LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVEKH-PYPAQFN 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VCLKMNSGMNRLGFKPQNYVQAWERLNNLANVSKITHMMHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F +I G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIIKDLPGERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQPITIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTIGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTVRV 361 >gi|114777489|ref|ZP_01452486.1| biosynthetic alanine racemase [Mariprofundus ferrooxydans PV-1] gi|114552271|gb|EAU54773.1| biosynthetic alanine racemase [Mariprofundus ferrooxydans PV-1] Length = 358 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 116/376 (30%), Positives = 173/376 (46%), Gaps = 28/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M I+L L +N+ + + +A AVVK NAYG G +APAL+ AG + F Sbjct: 1 MSRPAIAW--INLDHLCHNYRLLQQAATDASVMAVVKANAYGHGLNLVAPALFRAGCRLF 58 Query: 61 FVTSVEEGVKLRL-------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113 VT +EG KLR + G + +L P IS Q Sbjct: 59 AVTDADEGAKLRNILRSDDPAGDTEIALLSGIFDAGDASLATTEHLTPTISDSAQCDMLQ 118 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G + ++VDTG NRLG + + L Q+ +SHLACAD P Sbjct: 119 AADFDGAA---WIKVDTGMNRLGAAEPQVLIRQCLQA---GIQIRGFMSHLACADTPLHP 172 Query: 174 VNSVQLERFRTLISHYKG-IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 +N Q ERF +L + SL +S+GI+ P+ + RPGI+LYG K + Sbjct: 173 MNRQQAERFASLCDQAAPQLPRSLLNSAGIISMPDQCLDVVRPGIALYGAEPVAEKPMGL 232 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ AR+I +R AGE VSY IA+ + GYADG P LSG Sbjct: 233 KPVMRMTARVIQVRDIKAGETVSYSASFTAETSMRIAIVSAGYADGIPRALSGC------ 286 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 G+ ++P+ G++ MD TM +++D+ +I+ GD ++ +G ++ +DVA T Sbjct: 287 -----GQASCHDRLLPVTGRVCMDYTMLNVSDT-NIQSGDNVEFWGMELAANDVASMIDT 340 Query: 353 TNYDLLVRIGTRYAKF 368 +Y L +G R + Sbjct: 341 ISYTLFTGVGERVRRV 356 >gi|257893317|ref|ZP_05672970.1| alanine racemase [Enterococcus faecium 1,231,408] gi|257829696|gb|EEV56303.1| alanine racemase [Enterococcus faecium 1,231,408] Length = 373 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 150/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ G Sbjct: 66 SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQVAAAILEEGKLE 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD P +Q Sbjct: 126 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWKLQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 186 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+ + G Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + DVA Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 352 LGTIHYEVACGLGQRIPREY 371 >gi|291459573|ref|ZP_06598963.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417851|gb|EFE91570.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262] Length = 429 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 161/375 (42%), Gaps = 30/375 (8%) Query: 11 IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +DL ++ N + L R +V+K +AYG G +A A+ + + V + EEG Sbjct: 45 VDLDIIRENVRNARKLLPKGCRFCSVLKADAYGHGAPAVASAIDDLS-DFYAVATPEEGA 103 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128 LR + Q I VL + ++ + + P + + Q SK G + L V Sbjct: 104 LLRAHGFQKPILVLGAVSDRAYPMLLERRIRPAVFLLSQAKALSKAAGEAGCTALLHLAV 163 Query: 129 DTGFNRLGLSLQEA--LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 DTG R+G++ +E + + ++ I +H + AD+ + +Q ERFR Sbjct: 164 DTGMGRIGIASEEEGSAELALSIAALPNLKVEGIFTHFSTADETDKEFSFLQRERFRRFC 223 Query: 187 SHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTA 238 A+S+GI+ F + R GI+LYG P++ ++ Sbjct: 224 EKLSERGLSIPIRHCANSAGIIASIGTDFDMVRDGIALYGIYPSRAAESARLPLKAALSW 283 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A++ +R+ A +SYG R++ +AV +GY DG P LS Sbjct: 284 FAKVSAVRRLPASSPISYGRTFTTARETELAVIPLGYGDGLPRLLSNR-----------A 332 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTN 354 + I+G PILG+I MD M D+T + GD + + G +I L D G Sbjct: 333 EVLIRGRRCPILGRICMDQFMADVTGL-GVRRGDRVTLLGRDGEEEIGLYDW-ERLGAFP 390 Query: 355 YDLLVRIGTRYAKFY 369 Y++L +G R + Y Sbjct: 391 YEVLCGLGKRVPRLY 405 >gi|256371254|ref|YP_003109078.1| alanine racemase [Acidimicrobium ferrooxidans DSM 10331] gi|256007838|gb|ACU53405.1| alanine racemase [Acidimicrobium ferrooxidans DSM 10331] Length = 363 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 161/369 (43%), Gaps = 13/369 (3%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + +IDL L+ N + + A +AVVK +AYG G +A AL + V F Sbjct: 1 MIGHRPTEARIDLERLRANARLLAERAAPAALSAVVKADAYGHGASTVARALGDL-VDAF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMSCG 119 V +VEEG+ LR R+ VL ++L P + + + G Sbjct: 60 CVATVEEGLALRAAGVTGRVLVLSEPPESAVSACAASSLEPFVEHERFVEALAGAASALG 119 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + VDTG +R G+ +A ++ + + + + + P+ QL Sbjct: 120 REASVHIDVDTGMHRSGVHPAQAATLAASARRHGVRVVGVASHLVRADEAPTHPTTLEQL 179 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 RFR + + E L ++ G+L P F+ R GI LYG + + ++ V+ Sbjct: 180 SRFREVAARIGAPERHLLATGGLLALPEGRFERVRVGIGLYGYGPRRDDVAGLRPVLRLV 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + ++ + AGE VSYG ++ L + +A IGYADG P + G Sbjct: 240 SHVVRLEALGAGEAVSYGHRRPLDVPAEVATLPIGYADGVPR----------AAFDAGLA 289 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + KG +PI G +TMD TM L + +GD + + G ++ + A GT Y++L Sbjct: 290 FWAKGVRLPIAGTVTMDQTMVAAPRGL-LALGDEVSLIGDEVDAWEWADVLGTIPYEVLA 348 Query: 360 RIGTRYAKF 368 R+G R + Sbjct: 349 RLGPRIPRV 357 >gi|331699117|ref|YP_004335356.1| Alanine racemase [Pseudonocardia dioxanivorans CB1190] gi|326953806|gb|AEA27503.1| Alanine racemase [Pseudonocardia dioxanivorans CB1190] Length = 419 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 166/386 (43%), Gaps = 30/386 (7%) Query: 3 SNEFLRLK--IDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 S+ R + +DL A+++N ++ + A T AVVK + YG G +A A AG Sbjct: 25 SDRGPRAELVVDLAAVRHNVGLLSRGAAASGAATMAVVKSDGYGHGAADVARAALQAGAS 84 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 V +++E + LR +A + + + +SS + + Sbjct: 85 WLGVCTLDEALALRADGIEAPVLSWLHLPHEDFAPAVAAGVDLSVSSHGHLDAVLAGARA 144 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHV 174 L++DTG +R G + D + ++ + SHLA AD V Sbjct: 145 VDRPARLHLKIDTGLSRNGCPEDDWPDLVDAAAKAAAAGRCEVVAVWSHLAVADVARHPV 204 Query: 175 NSVQLERFR--TLISHYKGIEA--SLASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228 Q RF ++ +G+ LA+S+ + P+ H+ L RPGI++YG + Sbjct: 205 TEAQAARFDAAWRVARDRGLTPIRHLANSAATMTRPDLHYDLVRPGIAVYGLDPLGRPVA 264 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P++ +T R++L+++ AGE VSYG + RD+++A+ IGY DG P ++ Sbjct: 265 ESPLRPAMTVRGRVVLVKQVRAGEGVSYGHEFTTPRDTVLALVPIGYGDGVPRRMNFGGR 324 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPD----IK 342 ++ G P++G++ MD + D + GD +FGP Sbjct: 325 MR---------VWLAGRSRPVVGRVCMDQVVVDCGPDGGAEVREGDVAVLFGPGDDGAPT 375 Query: 343 LDDVALASGTTNYDLLVRI-GTRYAK 367 + A GT +Y+++ + G R + Sbjct: 376 AQEWADELGTIHYEVVTGVQGRRMTR 401 >gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD] Length = 741 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 144/352 (40%), Gaps = 20/352 (5%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 L + A+VK +YGLG +IA L + + V +EGV+LR I V+ Sbjct: 399 LKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAVADEGVELRKNGITVPIVVMNP 458 Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VSHPYALQVDTGFNRLGLSLQEA 142 I + NL P I S L + K + +P ++++TG +RLG E Sbjct: 459 EQHS-YNTIIEYNLEPNIYSFRVLELFHKQLKQNGYEGRYPIHIKLETGMHRLGFKEDEI 517 Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH-----YKGIEASLA 197 + S+ + Q ++F L + + Sbjct: 518 DQLKDYLNQMSVKVESIFSHLSSSDIPQEKDYTLAQCQKFDKLSQNIIKDLNYKPLRHIL 577 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +S+GI Y + R GI + G + + VV ++ I I + + VSYG Sbjct: 578 NSAGITNYTYYQMDMVRIGIGMMGISASPEIQPLLNPVVAFKSVISQISEIQPNDSVSYG 637 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 + K ++ + IA +GYADG P LS G IK + PI+G + MDM Sbjct: 638 RRYKASKSTRIATIPVGYADGVPRLLSNGV----------GYVGIKNTLCPIVGSVCMDM 687 Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M DI+D + + GD + IF L+D A+ S T Y++L I R + Y Sbjct: 688 MMVDISDLPT-KEGDEVTIFHEKPSLEDFAMYSQTIPYEVLTSISRRVKRVY 738 >gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868] gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868] gi|315022146|gb|EFT35175.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Riemerella anatipestifer RA-YM] Length = 814 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 144/352 (40%), Gaps = 20/352 (5%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 L + A+VK +YGLG +IA L + + V +EGV+LR I V+ Sbjct: 472 LKPETKIMAMVKAYSYGLGGYEIAEFLQHHHIDYLGVAVADEGVELRKNGITVPIVVMNP 531 Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG---VSHPYALQVDTGFNRLGLSLQEA 142 I + NL P I S L + K + +P ++++TG +RLG E Sbjct: 532 EQHS-YNTIIEYNLEPNIYSFRVLELFHKQLKQNGYEGRYPIHIKLETGMHRLGFKEDEI 590 Query: 143 LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH-----YKGIEASLA 197 + S+ + Q ++F L + + Sbjct: 591 DQLKDYLNQMSVKVESIFSHLSSSDIPQEKDYTLAQCQKFDKLSQNIIKDLNYKPLRHIL 650 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +S+GI Y + R GI + G + + VV ++ I I + + VSYG Sbjct: 651 NSAGITNYTYYQMDMVRIGIGMMGISASPEIQPLLNPVVAFKSVISQISEIQPNDSVSYG 710 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 + K ++ + IA +GYADG P LS G IK + PI+G + MDM Sbjct: 711 RRYKASKSTRIATIPVGYADGVPRLLSNGV----------GYVGIKNTLCPIVGSVCMDM 760 Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M DI+D + + GD + IF L+D A+ S T Y++L I R + Y Sbjct: 761 MMVDISDLPT-KEGDEVTIFHEKPSLEDFAMYSQTIPYEVLTSISRRVKRVY 811 >gi|224542708|ref|ZP_03683247.1| hypothetical protein CATMIT_01893 [Catenibacterium mitsuokai DSM 15897] gi|224524418|gb|EEF93523.1| hypothetical protein CATMIT_01893 [Catenibacterium mitsuokai DSM 15897] Length = 328 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 152/340 (44%), Gaps = 16/340 (4%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90 A++K NAYG G +++A L + + Q F V +++E V LR + I VL + Sbjct: 1 MVAIIKANAYGHGYKEVASVLKDEPIIQMFAVATLKEAVDLRNLGVKQDILVLGAVPLED 60 Query: 91 EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 I + N+ + S L +++ L +D+G NR+G ++ + Sbjct: 61 LNIAIEKNISLALFSFDYLNKINEMHHYDAPVKVHLSIDSGMNRIGFKTEKEFEQAMEMI 120 Query: 151 NKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209 + + I +H A ADD QL F++++ + + +S+ ++ + Sbjct: 121 DPAKIDVEGIFTHFATADDFSQDDEYEKQLALFKSIVGNNRFKYVHCDNSAAMMFHHSDF 180 Query: 210 FQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 LTR GI++YG + ++ ++ ++ ++ +++ GE + YG D +A Sbjct: 181 GNLTRIGIAMYGVDPRGEENKDLKQAMSLYTKVAMVKVVPKGEKIGYGMTYTADEDQYVA 240 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329 IGYADG+ G + +I G+ P++G++ MD M + +++ Sbjct: 241 TLPIGYADGFTRANQGR------------EVYINGHYYPVVGRVCMDQCMVKV--DENVK 286 Query: 330 VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD ++IFG I L +A T Y+++ I R + Y Sbjct: 287 PGDDVEIFGEHISLAKMAKEINTIPYEIICLISPRVERIY 326 >gi|329902874|ref|ZP_08273284.1| Alanine racemase, catabolic [Oxalobacteraceae bacterium IMCC9480] gi|327548584|gb|EGF33244.1| Alanine racemase, catabolic [Oxalobacteraceae bacterium IMCC9480] Length = 361 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 155/371 (41%), Gaps = 22/371 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ID++AL++N A T AVVK NAYG G E+ A + Sbjct: 3 RPLVAIIDISALQHNLAEARRRMPAAITWAVVKANAYGHGLERGMRAF--GAADGLALVE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E V LR + I +L G + + + + + PQ + + Sbjct: 61 PEAAVALRELGWRKPILLLEGCFDLIDFRLAAQHHLELTIHCPQQIGWLEQTRFDAPVNV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERF 182 L++++G NRLG Q+ +++H A AD D + Q+ RF Sbjct: 121 HLKMNSGMNRLGFMPQDFAAAYQRLRVNPQVGKIALMTHFANADAADTPGMTLAEQVRRF 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM-----QTVVT 237 + + ++++S+ LL + RPGI LYGGT + S P ++ +T Sbjct: 181 QLGSAGLDA-PWNISNSAATLLHADMRSHEVRPGIMLYGGTPGTHTSTPAGAFGLRSAMT 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ +I +++ G+ V YG + I V A GYADGYP G Sbjct: 240 LQSELIAVQQIHPGDAVGYGSRFIAETPMTIGVVACGYADGYPRHA-----------PSG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + G ++G ++MDM D+T + G + ++G + +D+VA A+GT Y+L Sbjct: 289 TPVLVDGVRTRLVGNVSMDMLTVDLTPIPTAHHGSCVTLWGDGLPIDEVAQAAGTIGYEL 348 Query: 358 LVRIGTRYAKF 368 + I R + Sbjct: 349 MCAIAPRV-RV 358 >gi|257896498|ref|ZP_05676151.1| alanine racemase [Enterococcus faecium Com12] gi|257833063|gb|EEV59484.1| alanine racemase [Enterococcus faecium Com12] Length = 373 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 151/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ G Sbjct: 66 SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQVAAAILEEGKLE 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD P ++Q Sbjct: 126 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWNLQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 186 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+ + G Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + DVA Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 352 LGTIHYEVACGLGQRIPREY 371 >gi|126727196|ref|ZP_01743033.1| alanine racemase [Rhodobacterales bacterium HTCC2150] gi|126703624|gb|EBA02720.1| alanine racemase [Rhodobacterales bacterium HTCC2150] Length = 348 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 123/363 (33%), Positives = 186/363 (51%), Gaps = 26/363 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 LKIDL A+ NW +++A+ +G+ TAAVVK +AYGLG +A L AG FFV + EE Sbjct: 6 LKIDLNAIARNWRALDAMSAGDVETAAVVKADAYGLGIGPVAKILAKAGAHTFFVATAEE 65 Query: 68 GVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G R A I V G G I D +L+P+++S+ Q ++ + S + + Sbjct: 66 GAAARVALGNDAIINVFSGHMAGDTTTIRDFHLMPMVNSIEQ---LTRHLENLPSFQFGI 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+D+G NRLG+ E + + +LI+SHLACADDP+ N+ QL +FR + Sbjct: 123 QLDSGMNRLGMEPHEWSAVASLALSS---DPTLIMSHLACADDPAHPQNADQLSQFRAIT 179 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + SLA++ G LLGP +HF +TRPG+ LYGG + Q VV +I R Sbjct: 180 AG-LDVPLSLAATGGTLLGPAFHFSMTRPGVGLYGGFPYSDA----QAVVRLSLPVIQTR 234 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + GE V Y + R S IA + GYADG LS ++ Sbjct: 235 EVAVGETVGYSASWRAERPSKIATLSAGYADGITRALSNAAILYA-----------GDTP 283 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 P+ G+++MD+ D++ ++ ++ + P +D VA GT Y++L +G RY Sbjct: 284 CPLAGRVSMDLLTVDVSHLD--QMPSHLDLLCPAQTVDQVAELGGTIGYEILTSLGHRYE 341 Query: 367 KFY 369 + Y Sbjct: 342 RQY 344 >gi|264676328|ref|YP_003276234.1| alanine racemase [Comamonas testosteroni CNB-2] gi|299533815|ref|ZP_07047186.1| alanine racemase [Comamonas testosteroni S44] gi|262206840|gb|ACY30938.1| alanine racemase [Comamonas testosteroni CNB-2] gi|298718231|gb|EFI59217.1| alanine racemase [Comamonas testosteroni S44] Length = 368 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 147/374 (39%), Gaps = 26/374 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + +A+ +V+K NAYG G E + L F + Sbjct: 3 RPITATIHPEAVRHNLERVRQAVPDAKLWSVIKANAYGHGIENVFEGLRA--TDGFAMLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E ++R + I +L G+ ++ I I + + V H Sbjct: 61 LDEAQRVRNLGWRGPILLLEGVFELRDLEICSRLGIWHAVHCDEQIDWLAAHKTQVGHRV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + + ++H + AD H QL F Sbjct: 121 FLKMNSGMNRLGFTPERFRAAYARLNALPQVDEISFMTHFSDAD--VEHGLDHQLRVFHE 178 Query: 185 LISHYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTA 238 G + S++ +L G N RPGI LYG + +T Sbjct: 179 TTLDLPGERSVSNSAATLLHGDENNVRCDWVRPGIVLYGSSPDFPTHDAAHWGLEPTMTL 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++II ++ AG+ V YG + + + V A GYADGYP G Sbjct: 239 SSKIIGTQELHAGDTVGYGSRFQCDGPLRLGVVACGYADGYPRVC-----------PTGT 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTT 353 + G LG+++MDM D++ +G + ++G + +D+VA A+GT Sbjct: 288 PVLVDGVRTRTLGRVSMDMMAVDLSPVPKARLGSEVTLWGRASNGAVLPIDEVAAAAGTL 347 Query: 354 NYDLLVRIGTRYAK 367 Y+L+ + R K Sbjct: 348 GYELMCAVAPRVPK 361 >gi|257887884|ref|ZP_05667537.1| alanine racemase [Enterococcus faecium 1,141,733] gi|257823938|gb|EEV50870.1| alanine racemase [Enterococcus faecium 1,141,733] Length = 373 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 151/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 6 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ G Sbjct: 66 SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTRGWLQVAAAILEEGKLE 125 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD P ++Q Sbjct: 126 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWNLQ 185 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 186 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+ + G Sbjct: 246 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + DVA Sbjct: 301 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 352 LGTIHYEVACGLGQRIPREY 371 >gi|300362411|ref|ZP_07058587.1| alanine racemase [Lactobacillus gasseri JV-V03] gi|300353402|gb|EFJ69274.1| alanine racemase [Lactobacillus gasseri JV-V03] Length = 376 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 145/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A+K N + M L + AVVK N YG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIKRNIENEMQHLEPGQKMLAVVKANGYGHGAVEVAKLADQVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I ++ + ++ L K + + Sbjct: 66 AILDEALELRRADITKTILVLGVVSPEYAPIAAANDISLTVPNLEWLKEAEKYLENSDLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + N + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFNEDKDFIAANKFLKNNDNFYIEGMFAHFASADSSDETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + L R GI +YG N + P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSPDLKSKIA 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ E+ + ++ G+ V YG +D++I +GYADG+ G Sbjct: 246 LDPALSFESELTHVKTIHQGDGVGYGSTFVANKDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVA 347 K + PI+G+I MD M ++ + +G + I + + A Sbjct: 301 -------KVKVGNAYCPIVGRICMDQFMVEMPKEMP--IGTKVVIISNNPDDPNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|119476766|ref|ZP_01617076.1| alanine racemase 1, PLP-binding, biosynthetic [marine gamma proteobacterium HTCC2143] gi|119450022|gb|EAW31258.1| alanine racemase 1, PLP-binding, biosynthetic [marine gamma proteobacterium HTCC2143] Length = 338 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 148/348 (42%), Gaps = 26/348 (7%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP-GQE 91 A+VK +AYG G ++A L V VEE ++LR RI VL G Sbjct: 1 MAMVKADAYGHGLIEVAATLDA--ADGLAVARVEEALELRAAGFMQRILVLAGALTLTDL 58 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 ++ VI S Q+ + + L++D+G +RLGLS + + Sbjct: 59 LQCSRQSIDLVIHSANQVDEF-LAATLSAPVNIWLKIDSGMHRLGLSADQFQQYQQQLSR 117 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211 + L ++H +D ++ Q F ++ + + SLA+S+ I+ P+ H Sbjct: 118 SSNSREILSMTHFGSSDADNTQQTQQQEALFEEAVAGFS-VPQSLANSAAIIKRPSSHRD 176 Query: 212 LTRPGISLYGGTDKINKSHPMQTV-----VTAEARIILIRKALAGELVSYGGQKKLTRDS 266 RPGI LYG +S + V +T + +I R AG+ V Y + DS Sbjct: 177 WVRPGIMLYGANPLTAESQHLFPVNLQTVMTLSSEVIATRGVKAGDSVGYNSRWTAPSDS 236 Query: 267 LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL 326 +IA +GY DGYP G + G ++G ++MD+ D+T Sbjct: 237 IIATVGVGYGDGYPRHARN-----------GTPVLVNGQRAALVGAVSMDLITIDVTHCN 285 Query: 327 SIEVGDYIQIFGP-----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++ VGD + ++G + ++VA + T +Y+L + R K Y Sbjct: 286 TVSVGDEVTLWGNASTGHQLAAEEVAQWAETISYELFTSVTPRVIKTY 333 >gi|322378393|ref|ZP_08052847.1| alanine racemase, biosynthetic (alr) [Helicobacter suis HS1] gi|322380074|ref|ZP_08054330.1| biosynthetic alanine racemase [Helicobacter suis HS5] gi|321147481|gb|EFX42125.1| biosynthetic alanine racemase [Helicobacter suis HS5] gi|321149149|gb|EFX43595.1| alanine racemase, biosynthetic (alr) [Helicobacter suis HS1] Length = 389 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 167/391 (42%), Gaps = 34/391 (8%) Query: 1 MHSNEFLR----LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M +N L ++ID AL +N+ ++ ++ AVVK NAYG+G + + G Sbjct: 10 MSTNPLLSRASYIEIDTKALAHNFKVISEVADGMAIMAVVKANAYGVGALEASRVFIEQG 69 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V + EE +++RL+ I +L + + ++ + S Q ++S++ Sbjct: 70 ATYLGVATYEEALEVRLHFASIPILILGFTPTNMAEDLIKNHITQTLFSYEQACYFSQVA 129 Query: 117 -SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 S +++DTG +RLG Q++ + K ++ I +H + AD Sbjct: 130 LSLKQKLKVHIKIDTGMSRLGFFPTQQSANTIAKIAQLKGLEVEGIFTHHSNADSLYKGY 189 Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--- 226 ++Q ERF + + +A+S+ + PNY + R G++LYG I Sbjct: 190 ATMQAERFIEFLDLLDQLGLSFKYRHMANSAATISMPNYGLDMARVGLALYGLHPSIYTQ 249 Query: 227 ----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282 K ++ V+T +A+I+ +++ AG L+ YG + + V +GY DG+ Sbjct: 250 DALLKKGFELKNVLTLKAQIVSLKEIPAGRLIGYGEDFYCLEPTRVGVLPLGYGDGFSKV 309 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-- 340 L G + G +PI+G + MD D+ + GD + + G Sbjct: 310 LGN-----------KAWGLLHGKKIPIIGGVCMDQCFVDLGAI-QAKEGDTVILLGDSKS 357 Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D+A G NY+ + + R + Y Sbjct: 358 GAMGAGDIAKILGIINYEAITMLTKRLPRVY 388 >gi|116618901|ref|YP_819272.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097748|gb|ABJ62899.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 373 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 98/378 (25%), Positives = 166/378 (43%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL A++ N + +G R AVVK NAYG G +++ AL+ GV DF V + Sbjct: 10 RPTWLDIDLKAIQTNAKLIMRHAGAQRLIAVVKANAYGHGAKQVVGALFEVGVYDFAVAT 69 Query: 65 VEEGVKLRLYTPQARIFVL--YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + EGV LR Y PQA I + Q +++ + L P + + L + G Sbjct: 70 IGEGVDLRKYYPQAEINIFLLGVQDVTQTEVMVENRLSPAVGTTEWLDEAVNYIKDGQKL 129 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFN-KKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G A++ ++ + QL+ + +H A ADD + + Q++R Sbjct: 130 DVQLAVDTGMGRMGAHSASAVEDMYHLIQGTEKFQLAGVFTHFATADDNNQNYYDEQVQR 189 Query: 182 FRTLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235 F + + S S I + R G LYG + P++ Sbjct: 190 FYQWVQSAGIPKQYWHLANSGSAIWHHDEIYTDTIRVGSVLYGYNPGAPEKKMPLPLKPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++++ + + GE VSYG + IA IGYADGY +SG+ Sbjct: 250 LQLKSKLGSVHQLTTGESVSYGATYTAEKPQWIATLPIGYADGYLRRMSGM--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 K + G++ ++G++TMD + + + G + + G I ++++A + Sbjct: 301 ---KVLVDGHIEHVIGRVTMDQIVITLKQKYPV--GKTVTLVGLEGENQISVEEIAEYAQ 355 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++L G R + Y Sbjct: 356 TIPHEILTNFGARLPRIY 373 >gi|227550864|ref|ZP_03980913.1| alanine racemase [Enterococcus faecium TX1330] gi|293379277|ref|ZP_06625423.1| alanine racemase [Enterococcus faecium PC4.1] gi|227179962|gb|EEI60934.1| alanine racemase [Enterococcus faecium TX1330] gi|292642073|gb|EFF60237.1| alanine racemase [Enterococcus faecium PC4.1] Length = 374 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 151/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 7 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ G Sbjct: 67 SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQVAAAILEEGKLE 126 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD P ++Q Sbjct: 127 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQPDDTYWNLQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 187 KERFMEVLKKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 246 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+ + G Sbjct: 247 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + DVA Sbjct: 302 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 352 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 353 LGTIHYEVACGLGQRIPREY 372 >gi|213583064|ref|ZP_03364890.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 362 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 107/360 (29%), Positives = 171/360 (47%), Gaps = 15/360 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLAHHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + P+++SV Q +T+ + + P +Q+ Sbjct: 76 LRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG++ ++ + IISHLA AD P +N Q + Sbjct: 136 DSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAKKA 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 196 FPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQDV 254 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G + YG TR IA + GYADG P L +G +P Sbjct: 255 PVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL-----------RPPAGVCWRGVRLP 303 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +LG++ MD M D + + GD ++ G L++VA A T Y+++ R+G R+ + Sbjct: 304 VLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFRRI 362 >gi|269796206|ref|YP_003315661.1| alanine racemase [Sanguibacter keddieii DSM 10542] gi|269098391|gb|ACZ22827.1| alanine racemase [Sanguibacter keddieii DSM 10542] Length = 412 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 164/395 (41%), Gaps = 31/395 (7%) Query: 1 MHSNEFL-RLKIDLTALKNNWHSMNALSGN-----ARTAAVVKDNAYGLGCEKIAPALYN 54 M S F R +DL A+++N + + A+ AVVK + YG G A A Sbjct: 1 MTSRYFPARAVVDLGAIRSNVTELARRAAPSADRQAQVLAVVKADGYGHGLVPAARAAVA 60 Query: 55 AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYS 113 G +E + LR R+ + ++ ++ V + Sbjct: 61 GGATWLGAAQAQEALDLRAAGVTTRLLTWLAAPGAPYAELLRADVDVSVADVWALDAVVA 120 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDP 170 G + ++VDTG R G+ E L + ++ + ++ I SHLA AD+P Sbjct: 121 AARETGRTARVHVKVDTGLGRNGVMPDELGDVLARAVQAQSEGVLEVVGIWSHLALADEP 180 Query: 171 SSHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225 Q E F + + LA+S+ L P H+ L RPG+++YG + Sbjct: 181 EHPSVLAQAEAFDDAVRLAERAGAHLEVRHLANSAATLTAPRLHYDLVRPGLAVYGLSPV 240 Query: 226 INK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 + + + +T EAR+ +++ AG VSYG + T D+++ V +GYADG P Sbjct: 241 PDLGGPGDYGLVPAMTLEARLATVKRVPAGHGVSYGHRYTTTEDTVLGVVPVGYADGVPR 300 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVP---ILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 SG V +G G + G++ MD + D+ + + GD + +FG Sbjct: 301 HASGGPGTTGGPVRVGS-----GATARTLGVAGRVCMDQVVVDLGPAATEAAGDTVVLFG 355 Query: 339 P----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D A A+GT +Y++ R+G R + Y Sbjct: 356 SGADGGPTAQDWADAAGTISYEITTRLGARVPRVY 390 >gi|312140864|ref|YP_004008200.1| alanine racemase [Rhodococcus equi 103S] gi|311890203|emb|CBH49521.1| putative secreted alanine racemase [Rhodococcus equi 103S] Length = 414 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 166/380 (43%), Gaps = 28/380 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL A+ N + +G A AVVK +AY G +A A AG + VT++ Sbjct: 38 AEAVIDLDAVAYNIGILREHAGGATVMAVVKADAYNHGAVPVARAALAAGAGELGVTTLA 97 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 EG++L+ A + + +SS + G + Sbjct: 98 EGLELKNAGITAPVLSWLHTADSDFAPAVAAGVELGLSSPRHLAAVAAAARQVGTAATVT 157 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG NR G+S +E DF + + + + SHLA AD+P V Q ERF Sbjct: 158 VKVDTGLNRNGVSREEWTDFLKDLARVEAEGAVRFKGVFSHLAHADEPHHPVIDDQRERF 217 Query: 183 RTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 + + + I A L++S+ L P+ F + RPGI++YG + + + ++ V+ Sbjct: 218 TSALEDAERIGLVPEAAHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPDLGTFGLRPVM 277 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +R+ L++K AGE VSYG D+ +A+ +GYADG P L G Sbjct: 278 TFRSRVALVKKVAAGEGVSYGHTWVAPHDTTVALLPVGYADGIPRALGGRF--------- 328 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPD------IKLDDVALA 349 + ++ P +G++ MD + D+ D + GD FG D A A Sbjct: 329 --EVWLGDDRRPGIGRVCMDQVVVDLGPDGAGVREGDTAVFFGDGDGDRGVPHAQDWADA 386 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T +Y+++ + R + Y Sbjct: 387 LDTIHYEVVTSVRGRTIRTY 406 >gi|319941566|ref|ZP_08015892.1| alanine racemase [Sutterella wadsworthensis 3_1_45B] gi|319804936|gb|EFW01778.1| alanine racemase [Sutterella wadsworthensis 3_1_45B] Length = 370 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +IDL AL++N M + + AVVK NAYG G + A + Sbjct: 16 RPISAEIDLEALRHNLGVMRSKAAGRALWAVVKANAYGHGLDNAVTAFAD--ADGLATID 73 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + +R RI +L G + + + V+ S Q+ + Sbjct: 74 LCDAEIVRRCGWHKRILLLEGFFDAADIEPLQTLKVETVVHSPWQIAILR--AAKPKDVR 131 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG EA ++ ++H A A + S+ V ++ Sbjct: 132 VHVKVNSGMNRLGFRPSEAPAAAAQLAAIPGVRVMDYVTHFANA-EQSAVHAPVTVDDQL 190 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 + +A LA++ IL P Q R G++LYG + ++ + +T A Sbjct: 191 AAMGGLAREQACLANTGAILFHPEVQGQAVRAGVALYGVSPDEAVTSEALSLIPAMTLGA 250 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II +++ GE V YG + R S IAV A GYADGYP ++ G Sbjct: 251 EIIALQQVRPGESVGYGSRWTAQRPSRIAVVACGYADGYPRSM-----------PDGAPV 299 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 +++G P+ G ++MDM D+TD +VG ++++G I ++D+A GT Y+LL Sbjct: 300 WVEGSQAPLAGAVSMDMLTIDVTDIPEADVGSKVELWGRHIAVNDLARRCGTIGYELLCA 359 Query: 361 IGTRYA 366 + R Sbjct: 360 LARRVP 365 >gi|297569634|ref|YP_003690978.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2] gi|296925549|gb|ADH86359.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2] Length = 380 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 106/379 (27%), Positives = 171/379 (45%), Gaps = 28/379 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++IDL AL+ N+ ++ + + R AVVK +AYG G E A A AG F V ++EE Sbjct: 10 VEIDLKALRVNYEAVRSRVAPGIRIMAVVKADAYGHGLEAAAGAFAGAGADCFGVGTLEE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 G++LR + +L G P + + + L PV+ + L S+ G L Sbjct: 70 GIRLRRAGLDGEVVLLLGFDPREAAEVVEYRLSPVVFAADGLEALSRLAADRGRQVGVHL 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++D G R G++ + +L+ ++SH AD P + + + Sbjct: 130 KLDAGMGRFGVAPADLTRLAAIITGLPGLRLAGMMSHFPLADVPGAETRCREQWQLLQAG 189 Query: 187 SHYKGIEA-------SLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTV 235 A +A+S+ +L P H L RPGISLYG + +Q Sbjct: 190 GAVCLPPAGVARPLLHMANSAALLRFPWAHGDLVRPGISLYGYSPLPVELAAAGLALQPA 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +R++ ++ AG +SYG + + +AV +GYADGYP +SG Sbjct: 250 MSLRSRVLQVKMLPAGYGISYGHRYVTPAPTRLAVLPVGYADGYPRGVSGR--------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + + G VPILG I M+ M D++ +++ GD G I D++A G Sbjct: 301 --AQVLLGGRRVPILGTICMNACMADVSALPAVQAGDEAVFLGRQGEEFIGADELADWHG 358 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T +Y+LL RIG + YT Sbjct: 359 TISYELLCRIGAMNQRLYT 377 >gi|126697057|ref|YP_001091943.1| alanine racemase [Prochlorococcus marinus str. MIT 9301] gi|126544100|gb|ABO18342.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9301] Length = 399 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 181/382 (47%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ AL+ N + L N + AVVK + YG + + G + V Sbjct: 26 QRAWIEVKGKALETNVRQLRTKLRKNCQFMAVVKADGYGHDAKVVCDYAIKGGASELGVA 85 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++EEG+KLR + + I +L ++ I F +L+P ISS+ + + + G+ Sbjct: 86 TLEEGIKLRSFGVKKPILILGNLYTKRDLIISFKNDLMPTISSIRECLVCNNIGKHFGLK 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNSV 177 L+VDTG +RLG ++ + + + + I SHL+ AD+ ++ + Sbjct: 146 FSLHLKVDTGMSRLGFESKKFIQQFEKIKSFENISIEGIYSHLSSADENNALDSQSITQS 205 Query: 178 QLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q +F L+ I+ LA+S+G+LL ++HF + R G+S+YG + KI+K+ Sbjct: 206 QRLKFNELLKQINFDRNNEIKIHLANSAGMLLSKDFHFHMVRVGLSMYGYSPLAKIDKNL 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ ++ + ++ IR G VSYGG+ R + +AV +IGYADG P LSG Sbjct: 266 LLKPALSLKVKVAFIRTIDKGVSVSYGGKFVSNRKTKLAVLSIGYADGVPRNLSGKI--- 322 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 K P +G ITMD M DITDS I+VG + + G D I + Sbjct: 323 --------KVIHNNKFYPQVGSITMDQMMVDITDSKEIKVGSIMVLLGSDGDKTISPLEW 374 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 + S T +++L R K Sbjct: 375 SRKSNTIPWEILCSFKNRLPKV 396 >gi|225848038|ref|YP_002728201.1| alanine racemase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643355|gb|ACN98405.1| alanine racemase [Sulfurihydrogenibium azorense Az-Fu1] Length = 356 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 104/371 (28%), Positives = 163/371 (43%), Gaps = 28/371 (7%) Query: 5 EFLR--LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFF 61 +F+R I+ LK N ++ S N + AVVK +AYG ++ L + V+ F Sbjct: 2 DFIRSVALINTENLKKNVENLYKFS-NKKIFAVVKADAYGHDACIVSKTLSSLDIVEGFC 60 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V + EG LR I VL GI + ++ +L PVIS KL + Sbjct: 61 VATGYEGYLLREAGITKPIIVLGGILKQELELFNRYSLTPVISDFSHFEVAQKLEHKKI- 119 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++ DTG RLG + K ++ I+SH AD Q+E Sbjct: 120 ---HIKFDTGMRRLGFYQSDIEKL---KEKIKDFEVEGILSHFPSADTDPD-YTKSQIEE 172 Query: 182 FRTLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F+ ++ + +S ++ R GI++YG + + V+T + Sbjct: 173 FKEIVKMLDVNPKYIHIQNSAGVVYDCPFCNTIRLGIAIYGEKPTQDYPVSLYPVMTVLS 232 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 ++I ++ G+ +SY G K RD +AV + GYADG P +LS G Sbjct: 233 KVISVKSVKKGDRISYCGTFKADRDMKVAVVSFGYADGLPRSLSN-----------KGYV 281 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYD 356 I G I+G ITMDMT+ D++D ++ VGD + I G +IK D+A SGT Y+ Sbjct: 282 LINGKYCKIVGNITMDMTIVDVSDLDTVNVGDDVVIVGKLQDKEIKFSDIAKISGTIAYE 341 Query: 357 LLVRIGTRYAK 367 ++ I R + Sbjct: 342 IMCGISKRVIR 352 >gi|21674734|ref|NP_662799.1| alanine racemase [Chlorobium tepidum TLS] gi|25452782|sp|Q8KB67|ALR_CHLTE RecName: Full=Alanine racemase gi|21647945|gb|AAM73141.1| alanine racemase [Chlorobium tepidum TLS] Length = 383 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 161/368 (43%), Gaps = 25/368 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 I L L++N + A++ R +VK NAYG G ++ L GV+DF V Sbjct: 17 NLSEALISLGNLRHNLACIRAITGPQCRVMGIVKANAYGHGATQVTATLEAEGVRDFGVA 76 Query: 64 SVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCG 119 ++ E ++L P +RI G + + + S +CG Sbjct: 77 NIYEAIELLQEHRMLPDSRILAFASPLAGHIDLYLQHGVEMTVCDHETARAAESIAAACG 136 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VDTG RLG++ +EA + +L+ I +H A +D + QL Sbjct: 137 RRLQVQLKVDTGMGRLGVTPEEAAELLELIEACPNLELTGIYTHFAESD-KPEGFTARQL 195 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--PM 232 ERF + Y+ + A+S I+ P+ + RPGI LYG P+ Sbjct: 196 ERFLHVTGAYERRTGKTVTKHAANSGAIISMPDARLDMVRPGILLYGCHPVDAAPSTVPV 255 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ ++R+I +++ AG +SY + + IA + GYADG+ LS Sbjct: 256 RPVMQFQSRVIFVKEVPAGTAISYNRTWSAPKATRIATISAGYADGFHRALSNQ------ 309 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASG 351 + I G P +G ITMD TM ++ S++VGD +FG + ALA+G Sbjct: 310 -----ARVSIGGKSFPQVGTITMDQTMVNLGSDDSVKVGDTAVLFGWDGPSAGEQALAAG 364 Query: 352 TTNYDLLV 359 T +Y+LL Sbjct: 365 TISYELLC 372 >gi|189913008|ref|YP_001964897.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913337|ref|YP_001964566.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777684|gb|ABZ95984.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781405|gb|ABZ99702.1| Alanine racemase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 376 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 100/379 (26%), Positives = 156/379 (41%), Gaps = 36/379 (9%) Query: 12 DLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +A +N L ++ AVVK NAYG G A +AG V S+EE + Sbjct: 9 SRSAFSHNIALFRKLIGPKSKFTAVVKSNAYGHGLLATASIALDAGADYLGVNSLEEALS 68 Query: 71 LRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +R +A I ++ I + + D N ++S + ++ +KL L+V Sbjct: 69 IRRVFSKATILIMGSIPHLKERVAELADENFWVMVSRIEEMELLAKLSPTPK---IHLKV 125 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS- 187 DTG +RLG+ Q A KKL + + D + +QL F+ I Sbjct: 126 DTGMSRLGIPHQNAEVIAKEIAEKKLPLTGIATHFASTEDFTEHSHSMLQLGNFQDTIDT 185 Query: 188 ----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----------PMQ 233 + + ASS+ +L L R GISLYG + ++ Sbjct: 186 FAKHGFIDLICHCASSASAMLFSEARMDLVRVGISLYGLWPSLETKLSLSLMKKDVGMLK 245 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T + +I I+ G V YG K T ++ +AV +GY +G LS Sbjct: 246 PALTWKTQIQHIQNLNPGTFVGYGSTFKTTHETRLAVVPVGYYEGLDRKLSNH------- 298 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 G + G ILG+I M+MTM DIT ++GD + I G I DD A Sbjct: 299 ----GYMLVHGERAKILGRICMNMTMLDITHIPDAKIGDDVVIIGKSGNEMISADDHATW 354 Query: 350 SGTTNYDLLVRIGTRYAKF 368 +GT NY+++ +I + + Sbjct: 355 TGTINYEVVTKILGSFPRI 373 >gi|212696143|ref|ZP_03304271.1| hypothetical protein ANHYDRO_00679 [Anaerococcus hydrogenalis DSM 7454] gi|212676772|gb|EEB36379.1| hypothetical protein ANHYDRO_00679 [Anaerococcus hydrogenalis DSM 7454] Length = 367 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 152/376 (40%), Gaps = 29/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N L +DL + NN + S N++ AV+K + YGLG +IA + + + Sbjct: 1 MQENYLL---VDLDKILNNIKLIKEKSINSKICAVLKADGYGLGALEIAKYINDQ-IDYI 56 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +E LR I +L + + K+ N+ I + ++ + Sbjct: 57 AVAQFKEAKYLRENGIDKPILILGYLPIDKYKVCSSLNIDVGIYDLDYARKINESILD-- 114 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + + +DTG RLG E K SH A AD+ +Q + Sbjct: 115 TINCHILLDTGHTRLGFRDFEIE-KIKELKKFKKLNFIGAFSHFATADEKDLTYTKIQYQ 173 Query: 181 RFR---TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQ 233 +F I ++ S++ + N+ L R GI +YG + Sbjct: 174 KFTYIIEKIKDDFDLKLVHISNTAASMEYNFKSDLLRLGIGIYGIYPSDYIREISKIKLC 233 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V +A+I I+ G +SYG +D +A +IGYADG+ + S + Sbjct: 234 QVFEFKAQISFIKDVRKGTSISYGRTYIAPKDIKVATVSIGYADGFKRSFSNI------- 286 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G+ + G + ++G++ MD M D++ ++GDYI ++ PDI + A T Sbjct: 287 ----GEVLVNGKIAKVVGRVCMDQIMIDVSGI-DCKIGDYITLY-PDIYKE--ANKIHTI 338 Query: 354 NYDLLVRIGTRYAKFY 369 Y+L+ I R + Y Sbjct: 339 AYELMTSISNRVPRIY 354 >gi|238760291|ref|ZP_04621434.1| Alanine racemase 1 [Yersinia aldovae ATCC 35236] gi|238701493|gb|EEP94067.1| Alanine racemase 1 [Yersinia aldovae ATCC 35236] Length = 343 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 154/338 (45%), Gaps = 18/338 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID AL++N + ++ +R AVVK NAYG G +IA L + + V + Sbjct: 4 ATAVIDRRALRHNLQQIRHIAPQSRLIAVVKANAYGHGLLEIAHTLQD--ADCYGVARIG 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR I +L G ++ I N I + + + + Sbjct: 62 EALMLRSGGIVKPILLLEGFFAAEDLPILVANRIETAVHSIEQLEALENVQLPAPINVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F S + Q I+SH + AD+P QL F Sbjct: 122 KLDTGMHRLGVRPEQAEAFYQRLSACDNVIQPVNIMSHFSRADEPQVETTRQQLSCFDAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARI 242 + G++ S+A+S GILL P H RPGI LYG + + + + ++ + Sbjct: 182 TAGKPGMK-SIAASGGILLWPEAHRDWVRPGIILYGVSPLDSPHASHYNLLPAMALKSSL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R+ AGE V YGG RD+ + V AIGY DGYP + G I Sbjct: 241 IAVREHKAGEPVGYGGTWVSDRDTRLGVVAIGYGDGYPRSA-----------PSGTPVRI 289 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 G V ++G+++MDM D+ S +VGD + ++G D Sbjct: 290 NGREVGLVGRVSMDMISVDLGPDASDKVGDEVLLWGSD 327 >gi|42518359|ref|NP_964289.1| alanine racemase [Lactobacillus johnsonii NCC 533] gi|32329446|emb|CAD70179.1| alanine racemase [Lactobacillus johnsonii] gi|41582644|gb|AAS08255.1| alanine racemase [Lactobacillus johnsonii NCC 533] Length = 376 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 141/382 (36%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A+K N M L + AVVK N YG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIKRNLKNEMGHLEPGQKMLAVVKANGYGHGSVEVARVADKVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 66 AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + N + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFNEDADFITANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + L R GI +YG N + P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSPDLKSNIK 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVA 347 K + PI+G+I MD M + + + G + I + A Sbjct: 301 -------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|241895832|ref|ZP_04783128.1| possible alanine racemase [Weissella paramesenteroides ATCC 33313] gi|241870875|gb|EER74626.1| possible alanine racemase [Weissella paramesenteroides ATCC 33313] Length = 522 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 23/375 (6%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++I A++ N + L+G A+VK NAYG G ++ A +A V F V Sbjct: 157 TRRPAWIEISENAIQKNIAVIRELTGAHHFIAIVKANAYGHGMAQVLTAAKHANVDGFGV 216 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +++EG+ LR Y IF+L + LIPV++S L +S S Sbjct: 217 ATIDEGIWLRQYGILEPIFILGVTPVTYVDDLVKYQLIPVVTSEAWLNAAVNKLSSQASL 276 Query: 123 PYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++ VDTG R+G+ E L I H A AD+ Q++ Sbjct: 277 VISIGVDTGMGRIGIRHHDELQRVVEKINQTDQLILKGIGMHFATADEKDEAYYQKQVQT 336 Query: 182 FRTLISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--TVV 236 + L+ + I LA+S+ L R G ++YG + Q + Sbjct: 337 WHELVDDLPLPQHIWYHLANSATALWHEQPSRDAIRVGAAMYGFNPSGKEMLASQLTPAL 396 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +A ++ +++A AG +SYG + + I +GYADGY L G+ Sbjct: 397 TLKAELVHVKQAEAGASISYGATYQTKQPEWIGTLPLGYADGYARQLQGMYGL------- 449 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 G V I+G+I MD M + + + +G I + G +I L D+A T Sbjct: 450 ----LPDGRHVEIIGRIAMDQLMVRLPEEMP--IGTVITLIGKAGDEEITLVDLAERLNT 503 Query: 353 TNYDLLVRIGTRYAK 367 Y++ + TR + Sbjct: 504 IPYEIATSLSTRLPR 518 >gi|114799438|ref|YP_761112.1| alanine racemase [Hyphomonas neptunium ATCC 15444] gi|114739612|gb|ABI77737.1| alanine racemase [Hyphomonas neptunium ATCC 15444] Length = 396 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 192/371 (51%), Gaps = 15/371 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++E RL ID+ A+ N+ + A+ AR AAVVK +AYGL +IAP L G +DFFV Sbjct: 24 TDEAGRLTIDMGAIAANYRRLRAMHPAARVAAVVKADAYGLDATQIAPMLAGQGARDFFV 83 Query: 63 TSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-V 120 + E + L+ P A +FVL G+ PG E + + ++PV+++ Q + L Sbjct: 84 AHLAEALVLKPLLPPDAVLFVLNGLAPGSEPLCAEAGILPVLNTPEQARAWYTLAVNKAH 143 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 P ALQVDTG +RLGLS E D + L+++H+ACAD P + N+ Q+ Sbjct: 144 PVPAALQVDTGMSRLGLSEGELNDVLGWPSFAGQVNICLLMTHMACADTPGAPANADQMR 203 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RF + + SLA+S+ + P + RPG+ LYG MQ + EA Sbjct: 204 RFADFAARLPSVPRSLANSAAAMFLPEAAGDVLRPGLVLYGVDPGAGGVPKMQPAIALEA 263 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII +R AG V YG R +A + GYADG+P LS GG Sbjct: 264 RIIQLRHIPAGAGVGYGFDYIADRPLRVATLSAGYADGWPRALSN-----------GGAT 312 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G+ +PILG+++MD M D+T+ I GD +++ GP ++D+A TT +++L Sbjct: 313 WFAGHRLPILGRVSMDSCMVDVTNLPEGSIRPGDCVELIGPHQSVNDLARQLATTPHEIL 372 Query: 359 VRIGTRYAKFY 369 +G R+ + Y Sbjct: 373 TSLGRRFTRSY 383 >gi|325124086|gb|ADY83609.1| alanine racemase 2, PLP-binding, catabolic [Acinetobacter calcoaceticus PHEA-2] Length = 367 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 142/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R I +L GI P L I S Q+ + K Sbjct: 61 LDEAKRIRALGWTGPILLLEGIFSPQDLFDCVQYQLSFNIHSEAQIEWVEKHAYPA-QFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N + H + AD Q+ Sbjct: 120 VCLKMNSGMNRLGFKPQHYVQAWERLNNLANVSKITHMMHFSDADGERFGQQGIDYQINA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVAEQLMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+++MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTIGRVSMDMLAVDLTGIDSAKVGSEVVLWGQSSKGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|126699232|ref|YP_001088129.1| serine/alanine racemase [Clostridium difficile 630] gi|254975261|ref|ZP_05271733.1| serine/alanine racemase [Clostridium difficile QCD-66c26] gi|255092651|ref|ZP_05322129.1| serine/alanine racemase [Clostridium difficile CIP 107932] gi|255314388|ref|ZP_05355971.1| serine/alanine racemase [Clostridium difficile QCD-76w55] gi|255517066|ref|ZP_05384742.1| serine/alanine racemase [Clostridium difficile QCD-97b34] gi|255650170|ref|ZP_05397072.1| serine/alanine racemase [Clostridium difficile QCD-37x79] gi|260683293|ref|YP_003214578.1| serine/alanine racemase [Clostridium difficile CD196] gi|260686889|ref|YP_003218022.1| serine/alanine racemase [Clostridium difficile R20291] gi|115250669|emb|CAJ68493.1| Alanine racemase 1 [Clostridium difficile] gi|260209456|emb|CBA62968.1| serine/alanine racemase [Clostridium difficile CD196] gi|260212905|emb|CBE04150.1| serine/alanine racemase [Clostridium difficile R20291] Length = 712 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 163/377 (43%), Gaps = 29/377 (7%) Query: 5 EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++IDL L++N + A+ + AVVK NAYG ++A GV+ F V Sbjct: 344 NRAWIEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFAVA 403 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++EG+ LR Y I +L +P + K + + + SV L L + Sbjct: 404 TIDEGIDLRRYGILGEILILGYTNPIRAK---ELHKYNLTQSVIDLNHAISLNKQKYNIK 460 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLER 181 +++DTG +RLG + + K L + D + Q+E Sbjct: 461 SHIKIDTGMHRLGFDVNDVRSILKAFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQIEC 520 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 F LI K + + SS G PN R GI+LYG N + Sbjct: 521 FYKLIDFLLKKGIKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQLDL 580 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ ++++ILIRK + YG +RDS+IA+ +IGYADG P LS Sbjct: 581 RPVLSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS-------- 632 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 I G I+G+I MD DITD ++EVG+ I G D + +VA Sbjct: 633 --CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASEVAN 690 Query: 349 ASGTTNYDLLVRIGTRY 365 S + + +LL R+G R Sbjct: 691 NSCSISNELLSRVGRRL 707 >gi|110597832|ref|ZP_01386115.1| alanine racemase [Chlorobium ferrooxidans DSM 13031] gi|110340557|gb|EAT59040.1| alanine racemase [Chlorobium ferrooxidans DSM 13031] Length = 383 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 148/378 (39%), Gaps = 25/378 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + L N + G R +VK NAYG K++ AL G+ DF V Sbjct: 17 NMTEALVCIDHLLWNTRLIRKQVGETPRIMGIVKANAYGHNVHKVSAALETIGITDFGVA 76 Query: 64 SVEEGVKLRLYT---PQARIFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCG 119 ++ E ++L+ A I + ++ S + Sbjct: 77 NIHEAIELKTGGALKNPASILAFSSPLTSHIECFLQHDIDMTLCDSETLQAAEEIAAAHN 136 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + L+VDTG RLG A++ N + QL I +H A + P + QL Sbjct: 137 KTLSVQLKVDTGMGRLGTHPSMAMELLRCMENAEHLQLKGIYTHFADSSSPGG-FTAQQL 195 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--M 232 F+ L S Y+ + A+S IL P + RPGI LYG + + Sbjct: 196 AEFKRLTSEYEHAVSRTVCKHAANSGAILTAPGSWLDMVRPGILLYGYHPAKHTPLRLEV 255 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ EA++I I+ AG +SY IA A GYADGY LSG Sbjct: 256 KPVMQVEAKVIFIKTVEAGTTLSYNRTWSAPTLRSIATIAAGYADGYARVLSG------- 308 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASG 351 I G P +G +TMD M D+ ++ GD +FG + ++ +G Sbjct: 309 ----KATVMINGKPYPQVGTVTMDQIMVDLGTEHDVKKGDRATLFGWDGPSAEALSEIAG 364 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+ L + +R + + Sbjct: 365 TISYETLCSVSSRVKRIF 382 >gi|255100756|ref|ZP_05329733.1| serine/alanine racemase [Clostridium difficile QCD-63q42] Length = 712 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 163/377 (43%), Gaps = 29/377 (7%) Query: 5 EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++IDL L++N + A+ + AVVK NAYG ++A GV+ F V Sbjct: 344 NRAWIEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFAVA 403 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++EG+ LR Y I +L +P + K + + + SV L L + Sbjct: 404 TIDEGIDLRRYGILGEILILGYTNPIRAK---ELHKYNLTQSVIDLNHAISLNKQKYNIK 460 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLER 181 +++DTG +RLG + + K L + D + Q+E Sbjct: 461 SHIKIDTGMHRLGFDVNDVRSILKAFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQIEC 520 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 F LI K + + SS G PN R GI+LYG N + Sbjct: 521 FYKLIDFLLKKGVKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQLDL 580 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ ++++ILIRK + YG +RDS+IA+ +IGYADG P LS Sbjct: 581 RPVLSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS-------- 632 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 I G I+G+I MD DITD ++EVG+ I G D + +VA Sbjct: 633 --CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASEVAN 690 Query: 349 ASGTTNYDLLVRIGTRY 365 S + + +LL R+G R Sbjct: 691 NSCSISNELLSRVGRRL 707 >gi|254785046|ref|YP_003072474.1| alanine racemase [Teredinibacter turnerae T7901] gi|237683511|gb|ACR10775.1| alanine racemase [Teredinibacter turnerae T7901] Length = 382 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 21/377 (5%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L I+L+ + NW ++N S AVVK +AY LG ++ PALY AG + F+V ++ E Sbjct: 5 LTINLSKIAANWQALNRFVSAPVDCGAVVKADAYSLGMAEVLPALYLAGCRTFYVANLGE 64 Query: 68 GVKLRLYTPQAR-------IFVLYGIHPGQEKIIFDTNLIPV-ISSVPQLTFYSKLMSCG 119 + R I VL G PG+E+ D L+PV +S+ + + Sbjct: 65 ALDARGILSDVCGSYSDVAIVVLGGCAPGEERRFIDYRLVPVLVSTAMLERWCTVNGGEH 124 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+++TG RLGL E + + +++SHLACAD+P +N+ QL Sbjct: 125 NVLGSILKLNTGMGRLGLEPAEFERVVQDPAYLARADVRMLMSHLACADEPEHSLNAEQL 184 Query: 180 ERFRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQT 234 +RFR + Y+ + ASLA+S+G+ LG +YHF RPG+ LY + + ++T Sbjct: 185 QRFRRALDVSSERYRPLTASLANSAGVCLGGDYHFNAVRPGLGLYTSFAQADACGLGLET 244 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V ++ +R AGE V YG + RD+ +AV A GYADG LS + Sbjct: 245 AVELHLPVVQVRNLPAGESVGYGATYRAERDARLAVVAGGYADGLFRALSNRAHCWVCAP 304 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGT 352 G G+ VP++G+I+MD T+ DI+ + G I+ G + LDD+A ++ T Sbjct: 305 SGAG-----GWRVPVVGRISMDTTIVDISAVPEGVVAEGSRIEFIGEHVPLDDLAASAQT 359 Query: 353 TNYDLLVRIGTRYAKFY 369 NY++L +G RY + Y Sbjct: 360 INYEILTSLGVRYKRHY 376 >gi|260102331|ref|ZP_05752568.1| alanine racemase [Lactobacillus helveticus DSM 20075] gi|260083864|gb|EEW67984.1| alanine racemase [Lactobacillus helveticus DSM 20075] Length = 376 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 142/381 (37%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +K++L A++ N M L N + AVVK N YG G ++A G F V Sbjct: 7 RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 67 ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQL 126 Query: 123 PYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +D+G R+G + E + N + + +H A AD Q E+ Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNDNFFIEGMFAHFASADSDDETYFKHQCEK 186 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232 F+ + S + +++ + L R GI +YG N S P Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 247 EPALLFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 K + PI+G+I MD M + + + G + I + + A Sbjct: 301 ------KVKVGDEYCPIVGRICMDQFMVKMPKKMLV--GTKVVIISNNPSDPNNIKAAAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373 >gi|77361350|ref|YP_340925.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas haloplanktis TAC125] gi|76876261|emb|CAI87483.1| alanine racemase 1, PLP-binding, biosynthetic [Pseudoalteromonas haloplanktis TAC125] Length = 330 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 157/343 (45%), Gaps = 21/343 (6%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-QE 91 AV+K NAYG G IA L + F V ++E + LR I +L G Sbjct: 1 MAVLKANAYGHGLVTIAQHLND--ADAFAVARIDEALALRAGGLTKPIVLLEGFFDEADL 58 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SF 150 I+ N +I QL L+++TG +RLG++ ++ +F + Sbjct: 59 PILLANNFQTIIHDENQLAALE-NAQLEAPINCWLKINTGMHRLGIAPEQFDEFYNRLQK 117 Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210 +++H +CADD S Q+ F ++ L++S+GIL P+ H Sbjct: 118 TANANNTVNLMTHFSCADDVDSSKTMQQIALFNR-LAENVEQAHCLSNSAGILAWPSGHG 176 Query: 211 QLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267 RPG+ LYG + N K++ ++ V+ ++I +R A E V Y G+ + + + Sbjct: 177 DWVRPGLMLYGVSPMANTTGKTYQLEPVMRLTTKVIAVRNVAAHEAVGYSGRWQSDKPTQ 236 Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-L 326 +AV A+GY DGYP G I I+G + MDM DI ++ Sbjct: 237 LAVVAMGYGDGYPRHA-----------RAGTPVIINKQRYGIVGSVAMDMITLDIGNNTH 285 Query: 327 SIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +I+VGD + ++GP++ ++++A + T Y+LL I R + Y Sbjct: 286 NIKVGDEVTMWGPELPVEEIAQCADTIPYELLCNITPRVSYQY 328 >gi|326692184|ref|ZP_08229189.1| alanine racemase [Leuconostoc argentinum KCTC 3773] Length = 375 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 165/378 (43%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL A++ N + A +G R AVVK +AYG G + ALY GV+DF V + Sbjct: 11 RPSWLTVDLAAIQYNAKQIMAHAGAIRLIAVVKADAYGHGAVAVTTALYEIGVRDFAVAT 70 Query: 65 VEEGVKLRLYTP-QARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + EGV LR P +L G+ Q ++ L P + ++ L +L++ Sbjct: 71 IAEGVALRQQVPYDDFNIILLGVQDVQYVPVMVSQRLTPAVGTLAWLDEAEQLLNSDDQL 130 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNS-FNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G + AL ++ + QLS + +H A ADD + Q+ Sbjct: 131 MIQLAVDTGMGRMGAHSEAALQEMYDKVLDTPSLQLSGVFTHFATADDTNQAYYDQQVAN 190 Query: 182 FRTLIS--HYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGT---DKINKSHPMQTV 235 F ++ LA+S L + R G LYG ++ ++ V Sbjct: 191 FNAWVTAVGIPKQYWHLANSGSALWHHDQIETGTIRVGSVLYGYNPGAPELPMPVALKNV 250 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ ++RI + + AGE VSYG T +A IGYADGY + G+ Sbjct: 251 LSLKSRIGAVHQLQAGESVSYGATYTATEPQWVATLPIGYADGYLRRMGGMT-------- 302 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + G+ ++G++TMD + + + G + + G D I ++D A + Sbjct: 303 ----VLVNGHEEKVIGRVTMDQIVITLDRDYPV--GTVVTLIGQDGDAEITVEDFAQYAQ 356 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++L G R + Y Sbjct: 357 TIPHEILTTFGPRLPRIY 374 >gi|255306640|ref|ZP_05350811.1| serine/alanine racemase [Clostridium difficile ATCC 43255] Length = 712 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 106/377 (28%), Positives = 163/377 (43%), Gaps = 29/377 (7%) Query: 5 EFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++IDL L++N + A+ + AVVK NAYG ++A GV+ F V Sbjct: 344 NRAWIEIDLNNLEHNVKMIQKAMPEDCELMAVVKANAYGHSAFEVATCANQIGVKAFAVA 403 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++EG+ LR Y I +L +P + K + + + SV L L + Sbjct: 404 TIDEGIDLRRYGILGEILILGYTNPIRAK---ELHKYNLTQSVIDLNHAISLNKQKYNIK 460 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLER 181 +++DTG +RLG + + K L + D + Q+E Sbjct: 461 SHIKIDTGMHRLGFDVNDVRSILKAFKLKYLDICGIFTHLCVSDSLKDEDVDFTNKQIEC 520 Query: 182 FRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPM 232 F LI K + + SS G PN R GI+LYG N + Sbjct: 521 FYKLIDFLLKKGIKIPKVHIQSSYGFFNYPNLKCNYVRIGIALYGILSSPNDTTKLQLDL 580 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V++ ++++ILIRK + YG +RDS+IA+ +IGYADG P LS Sbjct: 581 RPVLSLKSQVILIRKIQKDDSFGYGRVFIASRDSVIAILSIGYADGIPRNLS-------- 632 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 I G I+G+I MD DITD ++EVG+ I G D + +VA Sbjct: 633 --CGKSYVIINGCRAAIVGRICMDQLAVDITDIPNVEVGNTAIIIGRDNLSELSASEVAN 690 Query: 349 ASGTTNYDLLVRIGTRY 365 S + + +LL R+G R Sbjct: 691 NSCSISNELLSRVGRRL 707 >gi|302344277|ref|YP_003808806.1| alanine racemase [Desulfarculus baarsii DSM 2075] gi|301640890|gb|ADK86212.1| alanine racemase [Desulfarculus baarsii DSM 2075] Length = 381 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 164/381 (43%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +L IDL A+ +N ++ + R A VK + YG G +A L AG + V Sbjct: 8 PYNKLTIDLEAIAHNLRALRTIMPKGLRVAGTVKSDGYGHGMVAVARKLKEAGAEFLAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 EG LR +I +L G+HP + L PV+ + + S + + G+ Sbjct: 68 HAAEGAVLRREGLAGQILLLLGLHPSEMTQAARLRLTPVLFDLETMAALSDVATGLGLRA 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG RLG+ ++AL+ + + ++ + SHLA + Q F Sbjct: 128 QCHLKVDTGMGRLGVRPEDALELLRAARALRGLEVRGLTSHLATGGSADRAMADEQAAVF 187 Query: 183 RTLISHYKGIEASLASSSGILLGPNYH--------FQLTRPGISLYGGTDKINKS--HPM 232 L++ + L SS G + R GI+LYGG + + Sbjct: 188 GQLLAAARAEGFDLPDSSLCNSGGAMDPPAAAPGPPHVVRLGIALYGGLPDPAMAGRLDL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + +++I +R A G+ VSYG + D+ + V +GY DGYP S Sbjct: 248 RGAMGLASQLIAVRPARRGQPVSYGCTWRADCDTWLGVVPLGYGDGYPRAASN------- 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFG----PDIKLDDVA 347 G + G PI+G++ M++T+ D+ +VGD + G +I D++A Sbjct: 301 ----NGFMLVHGQRAPIVGRVCMNLTVLDLGGFDPLPQVGDEVVALGGQGADEITCDELA 356 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 T +Y+++ R+G + Sbjct: 357 SWCQTISYEIVCRLGAANPRI 377 >gi|268318829|ref|YP_003292485.1| hypothetical protein FI9785_335 [Lactobacillus johnsonii FI9785] gi|262397204|emb|CAX66218.1| alr [Lactobacillus johnsonii FI9785] Length = 376 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 143/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A+K N + M L + AVVK N YG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 66 AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125 Query: 122 HPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + N + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFNEYADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINK-------SHP 231 +F + S + +++ + L R GI +YG N + P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPNSSDLKSNIP 245 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFIADEDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVA 347 K + PI+G+I MD M + + + G + I + A Sbjct: 301 -------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKVAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|110835047|ref|YP_693906.1| alanine racemase [Alcanivorax borkumensis SK2] gi|123149285|sp|Q0VMG4|ALR_ALCBS RecName: Full=Alanine racemase gi|110648158|emb|CAL17634.1| alanine racemase, catabolic [Alcanivorax borkumensis SK2] Length = 353 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 107/367 (29%), Positives = 165/367 (44%), Gaps = 22/367 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R++I L AL+NN L+G+A+ A+VK N YG G A + ++ V V Sbjct: 2 RGTRVEIRLAALRNNALRAAELAGDAQVFAMVKANGYGHGLLLAAETMLDS-VSGLGVAV 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQE-KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E LR + I V G +E + +L V+ S+ Q+ ++ Sbjct: 61 LDEARTLREHGIALPILVAEGFFDAEELEAAARLSLEVVVHSLWQVELL---LANPCPVR 117 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V+ G NRLGL EAL ++ ++SH ACAD + QL Sbjct: 118 IWLKVNAGMNRLGLRPNEALSAAAR-LSQAGNAPVGVMSHFACADMDEDIHSEKQLLL-A 175 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEA 240 ++ + S ++S+ +L P H Q RPGI LYG + +Q A Sbjct: 176 GSVAEQLQLPLSASNSAALLRYPRAHAQRVRPGIMLYGSSPFNWQTAAELGLQVSHRFSA 235 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+I I AGE V YG + I V A+GY DGYP G Sbjct: 236 RLIAINAVEAGESVGYGATWTASDPRQIGVVAVGYGDGYPRHA-----------PSGTPV 284 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G + ++G+++MDM D+T S VGD ++++G + +DDVA A GT +Y+L + Sbjct: 285 AVNGVVTTLVGRVSMDMITIDVTGL-SASVGDEVELWGDVVDVDDVARACGTISYELFCQ 343 Query: 361 IGTRYAK 367 I R + Sbjct: 344 ITQRPER 350 >gi|159904188|ref|YP_001551532.1| alanine racemase [Prochlorococcus marinus str. MIT 9211] gi|159889364|gb|ABX09578.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9211] Length = 381 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 99/381 (25%), Positives = 165/381 (43%), Gaps = 28/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ A++ N ++ AVVK + YG G + +A + G Q V Sbjct: 10 QRAWVEVKPAAIEANTRNIKQRLPKQCMLMAVVKADGYGHGAQTVAKSALEGGAQSLGVA 69 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--S 121 +++EG+ LR ++ I +L + ++ + + S + ++ + Sbjct: 70 TLQEGIDLRQAGIKSPILLLGNLTNEEDLDACLSWNLMPTISDYREAVICHKIAEERVQT 129 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS----HVNSV 177 ++VDTG RLG L +A + + + L + SHLA AD V Sbjct: 130 FAVHVKVDTGMTRLGCELSDAPSLLNFIDDLRFLDLEGVYSHLALADGDFDGEGGRVTFH 189 Query: 178 QLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231 Q ++F L+ K I LA+S+G L ++ + R GI+LYG + + Sbjct: 190 QKQKFDNLLKSISLKNKSIVRHLANSAGTLRDCGLYYDMVRVGIALYGYSPIESLKNDFS 249 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + +ARI LIR+ AG VSYG S +AV IGYADG LSG S Sbjct: 250 LEPALAVKARITLIREVPAGTGVSYGHTFITKEQSRLAVVGIGYADGVGRALSGKIS--- 306 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 I G + P +G ITMD + DIT +L I VG+ + + G D + + Sbjct: 307 --------VLINGKLFPQVGAITMDQLVIDITGNLDISVGNVVTLLGFDQGRSLSPYYWS 358 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 SG+ +++L R + Sbjct: 359 DISGSIPWEILCGFKYRLPRV 379 >gi|317011147|gb|ADU84894.1| alanine racemase [Helicobacter pylori SouthAfrica7] Length = 377 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 166/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D ++L++N++++ A+ + AVVK NAYG+G K + G V +++E Sbjct: 8 VEVDTSSLRHNFNAVKNAIPKDTHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L +++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRFHFPKTPILILGYSPNSNAQMLVDNHLSAMIFSLEQAEIFSQIALKSKKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSVEIIKKIRALKGLEVEGIFTHLSNADANIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 + + IE + S N L RPGI LYG Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNNNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 VV+ +A+I+ I++ GE V YG ++L+ V A+GYADG L Sbjct: 248 KNVVSLKAQIVQIKRVKKGEFVGYGKHFYTNEETLVGVLALGYADGLARALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 + I + P++ K+ MD + D + + GD + +FG +++A Sbjct: 303 ------QVVINNQLAPLIAKVCMDQCFIKL-DGIEAKEGDEVILFGDKSTRANDANEIAT 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+++ + R + Y Sbjct: 356 LLNTIPYEVISTLSKRLERVY 376 >gi|46143476|ref|ZP_00135191.2| COG0787: Alanine racemase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 343 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 31/350 (8%) Query: 35 VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE--- 91 ++K NAYG G A L + V+ F V + E ++++ +I ++ G +E Sbjct: 1 MIKANAYGQGLLPAADTLADL-VEGFGVARLREALEIQETGYTGKILLIEGFFDREELLK 59 Query: 92 --KIIFDTNLIPVIS------------SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137 FDT + Q F+ + L++DTG +RLG+ Sbjct: 60 TLSRRFDTVIHCQEQLELLEQVAEEWQQEQQKGFWKRKAKIYFPINVWLKIDTGMHRLGV 119 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 ++ F L + +SH + AD+P Q+ F S Y E S++ Sbjct: 120 HPEQVDMFYQRLKACPLVESISFVSHFSRADEPDCGYTEKQIAIFEAATSPYPTHERSIS 179 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVTAEARIILIRKALAGELVS 255 +SSGIL H+ RPGI ++G + + V+T + +I +R AGE V Sbjct: 180 ASSGILYWKQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVG 239 Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315 YGG +D+ + V A+GY DGYP G + G +VPI+G+++M Sbjct: 240 YGGTWISDKDTKLGVVAMGYGDGYPRNA-----------PEGTPVLVNGRIVPIVGRVSM 288 Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 DM D+ +VGD + +G D+ +++VA G +Y+L+ ++ R Sbjct: 289 DMLTVDLGADSQDKVGDEVIFWGKDLLIEEVAQHIGVISYELITKLTPRV 338 >gi|167756231|ref|ZP_02428358.1| hypothetical protein CLORAM_01761 [Clostridium ramosum DSM 1402] gi|237734175|ref|ZP_04564656.1| alanine racemase [Mollicutes bacterium D7] gi|167704223|gb|EDS18802.1| hypothetical protein CLORAM_01761 [Clostridium ramosum DSM 1402] gi|229382735|gb|EEO32826.1| alanine racemase [Coprobacillus sp. D7] Length = 357 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 161/372 (43%), Gaps = 20/372 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHS-MNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQ 58 M + +I+L LK N + AV+K +AYG G ++A + + ++ Sbjct: 1 MSLHRDTYAEINLKYLKENIETTYKKFKRP--LMAVIKADAYGHGYREVATYIKDIEYLE 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMS 117 F V ++ E ++LR I +L + +E+I ++ + + + + Sbjct: 59 MFAVATLPEAIELRELGITKGILILGAVPTSKEEIDLAIKYDISLTMISLDYMHHLETLI 118 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++DTG +R+GL+ + LD N+ + L I +H A AD + Sbjct: 119 DQQPLKIHIKLDTGMHRIGLTSKAQLDEMLNTIDYNKFILEGIFTHYATADGEQAAF-DQ 177 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 Q E F L++ +K +S+ + + L R GI +YG N++ + V++ Sbjct: 178 QRELFYDLVADHKFKYIHCCNSAAMAYHHDDRSNLGRIGIIMYGIDPAGNETKEFKQVMS 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +++ LI+K AG+ V YG D +A IGYADG G + Sbjct: 238 LYSKVALIKKIKAGDRVGYGLTYTADEDEYLATIPIGYADGLIRKNQGRN---------- 287 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 +I G I+G++ MD M + +I+ GD ++IFG I L +A T Y++ Sbjct: 288 --VYINGKYFEIVGRVCMDQIMVRV--DETIKEGDKVEIFGAHISLASMARELETIPYEI 343 Query: 358 LVRIGTRYAKFY 369 + I R + Y Sbjct: 344 ICLITKRVDRLY 355 >gi|293573028|ref|ZP_06683970.1| alanine racemase [Enterococcus faecium E980] gi|291606930|gb|EFF36310.1| alanine racemase [Enterococcus faecium E980] Length = 374 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 7 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ Sbjct: 67 SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQAAAAILEESKLE 126 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD ++Q Sbjct: 127 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQSDDTYWNLQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 187 KERFMEVLKKLSELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 246 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+ + G Sbjct: 247 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + DVA Sbjct: 302 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 352 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 353 LGTIHYEVACGLGQRIPREY 372 >gi|78780004|ref|YP_398116.1| alanine racemase [Prochlorococcus marinus str. MIT 9312] gi|78713503|gb|ABB50680.1| alanine racemase [Prochlorococcus marinus str. MIT 9312] Length = 399 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 176/382 (46%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ A+++N + LS + + AVVK + YG + ++ G V Sbjct: 26 QRAWIEVKGKAIESNVRQLRSKLSKSCQFMAVVKADGYGHDAKVVSEYAIKGGASQLGVA 85 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 +++EG+ LR + I +L ++ I F +L+P ISS+ + + + G Sbjct: 86 TLKEGIMLRSSGVKKPILILGNLYAKRDLIISFKNDLMPTISSIRECLICNNIGKHFGSK 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177 L+VDTG +RLG + + + + + I SHL+ AD+ + Sbjct: 146 FSLHLKVDTGMSRLGFESNKFVQQFEKIKSFENISVEGIYSHLSSADEDNSLDPKSSTQI 205 Query: 178 QLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q +F+ + I+ LA+S+G+L+ ++HF + R G+S+YG + KI+++ Sbjct: 206 QRLKFQELLQQINVDRNHNIKIHLANSAGMLINKDFHFHMVRVGLSMYGYSPLAKIDRNL 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + + ++ IR G VSYGG+ R + +AV +IGYADG P LSG + Sbjct: 266 SLKPALFLKVKVAFIRIIDQGVKVSYGGKFVSGRKTKLAVLSIGYADGVPRNLSGKIN-- 323 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + P +G ITMD M DIT S I++G + + G D I D Sbjct: 324 ---------VIHNNELYPQVGSITMDQMMVDITGSDEIKIGSTMLLLGSDGDKTISPFDW 374 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A S T +++L R + Sbjct: 375 ANQSNTIPWEILCSFKNRLPRV 396 >gi|260551290|ref|ZP_05825491.1| alanine racemase 2 PLP-binding [Acinetobacter sp. RUH2624] gi|260405604|gb|EEW99095.1| alanine racemase 2 PLP-binding [Acinetobacter sp. RUH2624] Length = 367 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 143/373 (38%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL+NN + N++ AVVK NAYG G E++ A F + Sbjct: 3 RPITAVIHHQALQNNLVVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R I +L G+ P L + S Q+ + K Sbjct: 61 LDEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTVHSEAQIEWVEKH-PYPAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG Q + N ++H + AD Q+ Sbjct: 120 VFLKMNSGMNRLGFKPQHYVQAWERLNNLANVSKITHMTHFSDADGDRFGQQGIDYQITA 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F ++ G + S++ + R GI LYG + +Q ++ Sbjct: 180 FEEIVKDLPGERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTMS 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + II ++ E V YG + I + A GYADGY G Sbjct: 240 LRSEIISVQHLEPNESVGYGSNFVTEQPMTIGIVACGYADGYQRI-----------SPTG 288 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + +G+I+MDM D+T S +VG + ++G + +DDVA++SGT Sbjct: 289 TPVLVDSVRTRTIGRISMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGT 348 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 349 VGYELMCAVTARV 361 >gi|161506851|ref|YP_001576805.1| alanine racemase [Lactobacillus helveticus DPC 4571] gi|172048359|sp|A8YXI3|ALR_LACH4 RecName: Full=Alanine racemase gi|160347840|gb|ABX26514.1| Alanine racemase [Lactobacillus helveticus DPC 4571] Length = 376 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 79/381 (20%), Positives = 140/381 (36%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +K++L A++ N M L N + AVVK N YG G ++A G F V Sbjct: 7 RPAVVKVNLGAIRRNIKNEMQHLEPNQKMLAVVKANGYGHGAVEVAKVAEEEGAAGFCVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSH 122 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 67 ILDEALELRRADIVKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKDAEKYLAKENLQL 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLER 181 L +D+G R+G + + + + +H A AD Q E+ Sbjct: 127 KIHLGIDSGMGRIGFNEDDEFVAANKFLENNNNFFIEGMFAHFASADSDDETYFKHQCEK 186 Query: 182 FRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------- 232 F+ + S + +++ + L R GI +YG N S P Sbjct: 187 FKHMKSLLTVKPKWIHVDNTAASIFHSGIKSDLVRFGIGIYGLNPSSNPSSPDLTSAIEL 246 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 247 EPALSFESELTHVKTIHKGDGVGYGSTFMAEEDTIIGTVPVGYADGWIRKYQGF------ 300 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 K + I+G+I MD M + + + G + I + + A Sbjct: 301 ------KVKVGDEYCSIVGRICMDQFMVKMPKKMLV--GTKVVIISNNPSDPNNIKAAAD 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 353 YVDTIHYEVACLLNDRLPRVY 373 >gi|157414132|ref|YP_001484998.1| alanine racemase [Prochlorococcus marinus str. MIT 9215] gi|157388707|gb|ABV51412.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9215] Length = 399 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 104/382 (27%), Positives = 177/382 (46%), Gaps = 29/382 (7%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +++ AL+ N + LS N + AVVK + YG + ++ G V Sbjct: 26 QRAWIEVKGKALEINVRQLRTKLSKNCQFMAVVKADGYGHDAKVVSDYAIRGGASQLGVA 85 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 +++EG+KLR + + I +L ++ I F +L+P ISS+ + + + G+ Sbjct: 86 TLKEGIKLRSFGVKKPILILGNLYTKKDLIISFKNDLMPTISSIRECFICNNIGKHFGLK 145 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD----PSSHVNSV 177 L+VDTG +RLG + + + + + I SHL+ AD + + Sbjct: 146 FSLHLKVDTGMSRLGFESNKFVQQFEKIKSLENISIDGIYSHLSSADAENALDPQSITQL 205 Query: 178 QLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSH 230 Q +F + I+ LA+S+G+LL ++HF + R G+S+YG + KI+K+ Sbjct: 206 QRLKFNQLLKQINLDRNNEIKIHLANSAGMLLNKDFHFNMVRVGLSMYGYSPLAKIDKNL 265 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + + ++ IR G VSYGG+ +R + +AV +IGYADG P LSG + Sbjct: 266 LLKPALFLKVKVAFIRIIEPGVSVSYGGKFVSSRKTKLAVLSIGYADGVPRNLSGKIN-- 323 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 + P +G ITMD M DIT S I +G + + G D I + Sbjct: 324 ---------VIHNNKLYPQVGSITMDQMMVDITGSNEIRIGSTMVLLGSDGDKTISPLEW 374 Query: 347 ALASGTTNYDLLVRIGTRYAKF 368 A S T +++L R + Sbjct: 375 ATKSNTIPWEILCSFKNRLPRV 396 >gi|257899464|ref|ZP_05679117.1| alanine racemase [Enterococcus faecium Com15] gi|257837376|gb|EEV62450.1| alanine racemase [Enterococcus faecium Com15] Length = 374 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 28/380 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + I A+ N + + L AVVK N YG G + A A G F V Sbjct: 7 HRPTKAVIHKKAITENVANEVARLPQGKELFAVVKANGYGHGAVETAEAAVAGGASGFCV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-- 120 ++++EGV+LR I +L + + +L + L + ++ Sbjct: 67 SNLDEGVELREAGFTQPILILNMVPYDALALAVAHDLSVTAGTREWLQAAAAILEESKLE 126 Query: 121 -SHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ DTG R+G +E + ++ + + +H + AD ++Q Sbjct: 127 MPLSIHLKADTGMGRIGFCTPEEVKEAAAFIRESRVLEWEGLFTHFSTADQADDTYWNLQ 186 Query: 179 LERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQ 233 ERF ++ + + +S+ L + R G+++YG + + +P+Q Sbjct: 187 KERFMEVLKKLSELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQ 246 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + + +I ++K AGE + YG I IGYADG+ + G Sbjct: 247 PALELVSELIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWLRKMQGFSL----- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALA 349 ++G +G++ MD M + + G + + G +I + DVA Sbjct: 302 -------LVEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDVADQ 352 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 GT +Y++ +G R + Y Sbjct: 353 LGTIHYEVACGLGQRIPREY 372 >gi|329666669|gb|AEB92617.1| alanine racemase [Lactobacillus johnsonii DPC 6026] Length = 376 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A+K N + M L + AVVK N YG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGAAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 66 AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125 Query: 122 HPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + N + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFNEDADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM------ 232 +F + S + +++ + L R GI +YG N S P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHDGIKSDLVRFGIGIYGLNPSSNPSSPDLKSNIK 245 Query: 233 -QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVA 347 K + PI+G+I MD M + + + G + I + A Sbjct: 301 -------KIKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|227888877|ref|ZP_04006682.1| alanine racemase [Lactobacillus johnsonii ATCC 33200] gi|227850570|gb|EEJ60656.1| alanine racemase [Lactobacillus johnsonii ATCC 33200] Length = 376 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 144/382 (37%), Gaps = 30/382 (7%) Query: 4 NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +K++L A+K N + M L + AVVK N YG G ++A G F V Sbjct: 6 HRPAVVKVNLGAIKRNLENEMEHLEPGQKMLAVVKANGYGHGAVEVARVADKVGTAGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVS 121 ++E ++LR I VL + P I N+ + ++ L K + Sbjct: 66 AILDEALELRRADITKPILVLGVVSPEYAPIAAVNNVSLTVPNLEWLKEAEKYLKDANLQ 125 Query: 122 HPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G R+G + + + N + + +H A AD Q E Sbjct: 126 LKIHLGIDSGMGRIGFNEYADFIAANEFLENNDNFFIEGMFAHFASADSSDETYFKHQCE 185 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYG-------GTDKINKSHP 231 +F + S + +++ + L R GI +YG + + + P Sbjct: 186 KFNHMKSLLTVKPKWIHVDNTAASIFHNGIKSDLVRFGIGIYGLNPSSNPNSPDLKSNIP 245 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ E+ + ++ G+ V YG D++I +GYADG+ G Sbjct: 246 LEPALSFESELTHVKTIHQGDGVGYGSTFVADEDTIIGTVPVGYADGFIRKFQGF----- 300 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVA 347 K + PI+G+I MD M + + + G + I + A Sbjct: 301 -------KVKVGDTYCPIVGRICMDQFMVKMPKKMPV--GTKVTIISSNPNDQNNIKAAA 351 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T +Y++ + R + Y Sbjct: 352 DYVDTIHYEVACLLNDRLPRVY 373 >gi|84684702|ref|ZP_01012602.1| alanine racemase [Maritimibacter alkaliphilus HTCC2654] gi|84667037|gb|EAQ13507.1| alanine racemase [Rhodobacterales bacterium HTCC2654] Length = 349 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 189/365 (51%), Gaps = 26/365 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL+IDL A+ NW +++A + ++ +T AVVK + YGLG +++A L AG + FFV + E Sbjct: 5 RLQIDLDAIAANWRALDAKTASSVQTGAVVKADGYGLGVDRVAKTLAAAGARRFFVAAAE 64 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E +R P IF+L G G +I D NLIP++SSV Q ++ + + Sbjct: 65 EAADVRTALGPGPAIFLLNGHMAGDADMIRDLNLIPLLSSVEQ---LTRHVETLPGQSFG 121 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D G NRLG+ E + +LI+SHLACAD+P +N++QL F + Sbjct: 122 IQLDAGMNRLGMEPAEWAAVRDIALTA---GPTLIMSHLACADEPEHEMNAMQLRMFTEM 178 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SLA++ GILLGP+YHF LTRPGI LYG + VV + +I Sbjct: 179 TEG-CDVPRSLAATGGILLGPDYHFDLTRPGIGLYGARPFEEAT----PVVHLDLPVIQT 233 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R+ GE V YG + +A + GYADG LS + Sbjct: 234 REIGRGETVGYGNSWTADAPTRVATVSGGYADGITRHLSNKGVLFDSA-----------T 282 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 PILG+++MD DI ++ ++ + GP +DD+A +GT Y++L ++G RY Sbjct: 283 PCPILGRVSMDSIGIDIGHLDTVPE--WLTLIGPHQSVDDIADTTGTIGYEILTQLGHRY 340 Query: 366 AKFYT 370 + YT Sbjct: 341 TRDYT 345 >gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941] gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941] Length = 849 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 155/374 (41%), Gaps = 24/374 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++DL A+++N ++ A++G AV+K +AYG G + A A G V + Sbjct: 485 RPTWVRVDLDAIRDNVRALRAIAG-VPLMAVLKADAYGHGAVRAARAALAGGAMALAVAT 543 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E LR A I L P Q ++ + + + G++ Sbjct: 544 LGEARTLREAGIGAPILALGYTPPWQVAQAARLGIVLTVFDPDTARACAAAAAIGLNVTM 603 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VDTG R G+S++E F + ++ + +H A AD QL RF Sbjct: 604 HVEVDTGMARTGVSVEELGPFLRLLTDLPGVRVEGLYTHFADADAADLSAAEAQLRRFCA 663 Query: 185 LISHYK--GIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVT 237 + G+ + ++ L P F + RPGI+ YG + P + ++ Sbjct: 664 TLDAITSAGLRPPIVHAANSAALLRLPGARFDMVRPGIACYGLAPSPHTPLPPTLRPALS 723 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A + +R G VSYGG R S IA +GYADG + Sbjct: 724 FHAEVAQVRDLPPGAPVSYGGTFVTRRASRIATIPVGYADGLRRAPAWR----------- 772 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + ++ PI+G+I MD M D+TD + GD + + G + D++A GT Sbjct: 773 -EVLVRRRRAPIVGRICMDYAMIDVTDIPGVRRGDQVTLIGSQGDERLTADEIAGWLGTI 831 Query: 354 NYDLLVRIGTRYAK 367 +YD++ I R + Sbjct: 832 SYDVVATILPRVPR 845 >gi|297243200|ref|ZP_06927137.1| alanine racemase [Gardnerella vaginalis AMD] gi|296888849|gb|EFH27584.1| alanine racemase [Gardnerella vaginalis AMD] Length = 459 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 97/406 (23%), Positives = 166/406 (40%), Gaps = 44/406 (10%) Query: 8 RLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ +DL AL++N ++ VVK + YG G A A G Sbjct: 33 QVIVDLKALRDNMRTLVERVSQDLQPSQNAPEVMGVVKADGYGHGLVPSALAALAGGATW 92 Query: 60 FFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 E ++LR +R +L + D + SV + + Sbjct: 93 LGTAQPYEALRLRAAGIDSSRCHILTWLTSAPTTRFADLITADIDISVGSVDSLDAVAFA 152 Query: 119 ----GVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171 G ++VDTGF R G + + AL+ ++ + ++ SHLA AD P Sbjct: 153 ARKLGKPARVHVKVDTGFGRNGFTPEGFSAALEKLQQYSSEGVIEVIGQWSHLAVADSPD 212 Query: 172 SH----VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGG 222 Q+++F + K LA+++ L P F+L RPGI LYG Sbjct: 213 VPEFVDATDRQIQQFHEFTNRMKEASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 272 Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 +++ +Q +T +A++ ++ G +SYG ++ A+ +GYADG Sbjct: 273 EPDPAMGDSQTYGLQPAMTLQAQLGTVKAVEEGHGISYGRTYLTPNNTSTAIVPLGYADG 332 Query: 279 YPLTLSGLDSEHSPSV-FLGGKGFIK-GYMVPIL---GKITMDMTMFDI-TDSLS--IEV 330 + SG D + + V GG ++ IL G++ MD + D+ D+ + Sbjct: 333 ILRSASGFDMQGARHVDKQGGPVRVETNKGARILNVSGRVCMDQFIVDLKGDAAELGVRE 392 Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD + +FGP + DD A A+GT +Y+++ IG R + Y Sbjct: 393 GDTVTLFGPGRGVEFAEPTADDWAEAAGTISYEIMTGIGPRVPRLY 438 >gi|309810948|ref|ZP_07704748.1| alanine racemase [Dermacoccus sp. Ellin185] gi|308435102|gb|EFP58934.1| alanine racemase [Dermacoccus sp. Ellin185] Length = 400 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 156/394 (39%), Gaps = 41/394 (10%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N R+ +DL A+ +N + M + A VVK +AYG G A A + G V Sbjct: 12 NAPARVVVDLDAIADNANEMTRRAEGASVLGVVKGDAYGHGLVPSARAAVSGGSTWLGVA 71 Query: 64 SVEEGVKLRLYTPQA------RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLM 116 + E + LR + + + + + SV +L + Sbjct: 72 QLAEAMTLRRAAAEGAGDLDVPVLSWLHAPGSPFAEAIEARIDLGVPSVGELDGIAAAAR 131 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSH 173 G L+VDTG R G + + + + ++H AD+P Sbjct: 132 RVGRRARVHLKVDTGLARNGAYGDDWPRLVEAAKAAQATGDVEVVGLMTHFVRADEPGHP 191 Query: 174 VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 N+ Q+ERF + + + +++S P F L RPG++LYG + + Sbjct: 192 ENTAQIERFTSAATDCESAGFELEVRHMSNSPATFFLPEARFDLVRPGLALYGLSPAPDL 251 Query: 228 ---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 + ++ ++ A + + ++ AG+ VSYG R + +A +GYADG P S Sbjct: 252 ATSEELTLRPAMSITANVTVTKRVPAGQGVSYGHTYTTPRGTTLADIPVGYADGVPRAAS 311 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFG---- 338 + G + G I G++ MD +T ++ GD + +FG Sbjct: 312 NV-----------GPLLVAGARTTIAGRVCMDQI---VTDAGDAAVAAGDEVVLFGRASD 357 Query: 339 --PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 D A A+GT +Y+++ R+ TR + YT Sbjct: 358 GTQGPSAQDWADAAGTISYEIVTRMSTRLPRVYT 391 >gi|239813248|ref|YP_002942158.1| alanine racemase [Variovorax paradoxus S110] gi|259710076|sp|C5CX88|ALR_VARPS RecName: Full=Alanine racemase gi|239799825|gb|ACS16892.1| alanine racemase [Variovorax paradoxus S110] Length = 366 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 148/373 (39%), Gaps = 27/373 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + AL++N + +AR AVVK NAYG G E++ L G F + Sbjct: 3 RPILATVHTAALRHNLDRARRAAVDARVWAVVKANAYGHGIERVYEGLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + + +L G+ ++ +L + Q+ + + Sbjct: 61 LAEAERVRALGWRGPVLLLEGVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTL-KPQR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + +++H + AD + QLE F Sbjct: 120 VFLKMNSGMNRLGFAPERFGSAWTRLNALPQVDEISLMTHFSDADGARGI--AHQLEVFE 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV----VTAE 239 G + S++ + RPGI LYG + +T Sbjct: 178 RATHDLLGERSIANSAATLRHARQTRGDWVRPGIVLYGSAPDFPEHDAAHWQLQPTMTLS 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++I I+ AG+ + YG I VAA+GYADGYP + G Sbjct: 238 TKLIGIQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYPRHCN-----------TGTP 286 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTT 353 + G ++G+++MDM D+T + G + ++G + +D+VA A+GT Sbjct: 287 VLVNGVRTRMVGRVSMDMITVDLTPVPEAKFGTEVTLWGRSAVSGAVLPIDEVAQAAGTV 346 Query: 354 NYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 GYELMCAVAPRVP 359 >gi|313817562|gb|EFS55276.1| alanine racemase [Propionibacterium acnes HL046PA2] Length = 375 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 148/372 (39%), Gaps = 24/372 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 IDL+A+ N + +G+ + VK +AYG G +++ + V V E Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVAPVAE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 G +L I P + + + L SK G++ + Sbjct: 70 GQELVEAGIPLPILNPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGITAKIHI 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTL 185 VD+G R+GL + + T + K ++ + +HL +D P +++ F T Sbjct: 130 AVDSGMGRIGLRPECLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTA 189 Query: 186 IS----HYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAE 239 +S H ++SG +LG + + R GI YG + + ++ Sbjct: 190 VSLIETHRGPFPLVHLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWI 249 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + + ++ G+ + YG + + IA +GYADG LS G Sbjct: 250 SHVTFVKTVSVGDTIGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNY 355 I+G + PI+G+I MD M D+ ++ VGD + + G + DD+A GT +Y Sbjct: 299 VLIRGSVHPIVGRICMDQFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISY 358 Query: 356 DLLVRIGTRYAK 367 ++ I R + Sbjct: 359 EITCAISKRVDR 370 >gi|217032731|ref|ZP_03438215.1| hypothetical protein HPB128_158g10 [Helicobacter pylori B128] gi|298736103|ref|YP_003728628.1| alanine racemase [Helicobacter pylori B8] gi|216945547|gb|EEC24202.1| hypothetical protein HPB128_158g10 [Helicobacter pylori B128] gi|298355292|emb|CBI66164.1| alanine racemase [Helicobacter pylori B8] Length = 377 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKAKKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLARALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVVINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSAKANDASEIAT 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIAYETISTLSKRLERVY 376 >gi|56415949|ref|YP_153024.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364876|ref|YP_002144513.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130206|gb|AAV79712.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096353|emb|CAR61958.1| alanine racemase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 368 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 106/360 (29%), Positives = 171/360 (47%), Gaps = 15/360 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGEEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + + P+++SV Q + + + + P +Q+ Sbjct: 76 LRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG++ ++ + IISHLA AD P +N Q + Sbjct: 136 DSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAKKA 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 196 FPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQDV 254 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G + YG TR IA + GYADG P L +G +P Sbjct: 255 PVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL-----------RPLAGVCWRGVRLP 303 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +LG++ MD M D + + GD ++ G L++VA A T Y+++ R+G R+ + Sbjct: 304 VLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIIARLGARFRRI 362 >gi|330718524|ref|ZP_08313124.1| alanine racemase [Leuconostoc fallax KCTC 3537] Length = 375 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 162/378 (42%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L++DL A++NN ++ +G + AVVK NAYG G + +LY G++DF V + Sbjct: 12 RPTWLQVDLAAIQNNAKAIMKHAGAQKMIAVVKANAYGHGAVAVTNSLYAIGIRDFAVAT 71 Query: 65 VEEGVKLRLYT--PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++EG++LR I +L Q +I +L P I + L ++LM+ Sbjct: 72 IDEGIELRQNITQQDINILLLGVQDVAQVPVILQYHLTPAIGDIQWLMKATQLMAMDDVL 131 Query: 123 PYALQVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R + + LS + +H A ADD + Q+++ Sbjct: 132 NVHLAVDTGMGRMGARNEHDVQMVKDFIDQSSHFALSGVFTHFATADDHNDAYYQQQVQK 191 Query: 182 FRTLISHYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235 F+ +H + E + S + + R G +LYG + +Q Sbjct: 192 FQLWTTHAQIPEELCHLANTGSALWHHNEINTHTIRVGSALYGFNPGTPHLEMPLQLQPA 251 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + +I + GE +SYG + L+A IGYADGY L G+ Sbjct: 252 MALKTKIGATHQMAVGESISYGATYTAQQPQLVATLPIGYADGYLRRLQGM--------- 302 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 K + G+ ++G+ITMD + + + G + + G I ++D+A + Sbjct: 303 ---KVLVDGHFEKVVGRITMDQILITLKQPYPV--GTIVTLMGYDGEQQISVEDIANYAK 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++L + +R + Y Sbjct: 358 TIPHEVLTILTSRLPRIY 375 >gi|237786300|ref|YP_002907005.1| Alanine racemase [Corynebacterium kroppenstedtii DSM 44385] gi|237759212|gb|ACR18462.1| Alanine racemase [Corynebacterium kroppenstedtii DSM 44385] Length = 615 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 95/418 (22%), Positives = 148/418 (35%), Gaps = 65/418 (15%) Query: 6 FLRLKIDLTALKNNWHSMNALSG------NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 L + ID AL +N ++ + A AVVK N Y G + A G Sbjct: 30 LLTMTIDRDALAHNAQAVARNAQLANPDHPAELMAVVKANGYNHGAVEAARVFLANGATQ 89 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-----------LIPVISSVPQ 108 V ++ E V+LR A I + + I I Sbjct: 90 LGVATITEAVELRQAGISAPILAWIWNADDHVSVKAALDYGIDLGVPTLAHIRAIVDEAT 149 Query: 109 LTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLA 165 S+ V + VD+G +R G+S + D + + +HLA Sbjct: 150 ERKRSQEDWEFVPPRVTVMVDSGLSRSGISPDQWDDALKELSAASSDSIIDVTGAFTHLA 209 Query: 166 CADDPSSHVNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLY 220 AD + N+ Q +F I + + +S + P+ +Q+ RPG++LY Sbjct: 210 SADAADNPSNNRQKAQFDAAIEELQAAGIPVRINHMCNSPASVTRPDMFYQMVRPGVALY 269 Query: 221 GGTDKINKSHPM-----------QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 G + + +T A I+ R AGE VSYGG D++ Sbjct: 270 GMDPLEEPADRSASTGSSLVSQLKPAMTLSAPIVAKRLVKAGESVSYGGTWTADVDTVTG 329 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD----- 324 V GYADG P LSG + I G P +G++ MD + + Sbjct: 330 VVPAGYADGIPRALSGRM-----------EVAINGRRYPQIGRVCMDQIVVALGPAGSKQ 378 Query: 325 SLSIEVGDYIQIFGPD-------------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + ++ GD IFGP ++A GT +Y++L TR + Y Sbjct: 379 ASAVHQGDEAVIFGPPGECIGSDGKPASLPTATELAETLGTIHYEILTSPHTRVHRRY 436 >gi|302382920|ref|YP_003818743.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264] gi|302193548|gb|ADL01120.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264] Length = 345 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 123/364 (33%), Positives = 183/364 (50%), Gaps = 26/364 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL AL +N H++ A+SG A VVK ++YGLG +A L G + FFV + Sbjct: 5 ATLTVDLDALAHNVHALAAISG-APVHPVVKADSYGLGAIPVAQRLLREGSRTFFVARLA 63 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG+ LR P+ ++VL G + +L P+++ QL + Sbjct: 64 EGIALRSALGPEPTLYVLDGCVGDAAPALKAADLRPILNHGDQLMAWR----AADGGACG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQ+DTG NRLG +++A LSL++SHLACAD+P+ +N Q + F Sbjct: 120 LQIDTGMNRLGFRIEDAP--------APFEGLSLVMSHLACADEPAQPMNRRQRDAFAAA 171 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + Y G S A+S G LGP+Y F RPGI LYGG + ++ V T AR++ + Sbjct: 172 AARYPGALRSFANSGGCFLGPDYAFDAVRPGICLYGGGPEGRPHDRIKPVATLSARVLQV 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AGE + Y IA GYADG + G+ ++ G Sbjct: 232 RDVPAGESIGYSRGFVAPEARRIATCGAGYADGVLRS-----------QCPNGQVWVAGS 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 + PILG+++MD+ D+T + VGD +++FGP+ LDD A A+GT +Y+LL + R Sbjct: 281 LRPILGRVSMDVIAVDVTGL-DVAVGDPVELFGPNHLLDDAAAAAGTISYELLTSVTARV 339 Query: 366 AKFY 369 + Y Sbjct: 340 PRRY 343 >gi|289550307|ref|YP_003471211.1| Alanine racemase [Staphylococcus lugdunensis HKU09-01] gi|289179839|gb|ADC87084.1| Alanine racemase [Staphylococcus lugdunensis HKU09-01] Length = 382 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 152/382 (39%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S+++ R + +DL A+ NN+ L N V+K N YGLG +IA L + G Sbjct: 2 SDKYYRNTYINVDLAAINNNYRQFTQLHDNKTVIPVIKANGYGLGSVRIAQYLVDHGASF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--LIPVISSVPQLTFYSKLMS 117 F V +++E ++LR++ +A+I +L I + S + Sbjct: 62 FAVATLDEAIELRMHGIKAQILILGVIPIEDINKAIQHRVAITVPSKSWLSSAIKAINDD 121 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++DTG RLG+ Q E H + + +H ACAD+P Sbjct: 122 NEKRLWLHIKLDTGMGRLGIKNQAEYHQTIHLIEQHEHLVFEGVYTHFACADEPGDSA-Q 180 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDK----INKSHP 231 Q + F+T ++ A +S L + R GISLYG Sbjct: 181 QQYQCFKTWVTSTDMPRYVHAQNSAGALMIDADICNAVRLGISLYGYYPSEYVKEEADIE 240 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q +I+ ++ GE VSYG I + IGYADGY + G Sbjct: 241 LQPSAELMTQIVQTKELQPGESVSYGSTYTAQSPIKIGIIPIGYADGYLRIMQGH----- 295 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 +KG ++G++ MD T+ I D I GD + + +D +A Sbjct: 296 -------FVNVKGQQCEVIGRVCMDQTIIKIND--DILEGDEVCVISKQQDSIQSVDAIA 346 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L +G R + Y Sbjct: 347 KQQKTINYEVLCNLGRRLPRIY 368 >gi|257094224|ref|YP_003167865.1| alanine racemase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046748|gb|ACV35936.1| alanine racemase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 367 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 107/373 (28%), Positives = 170/373 (45%), Gaps = 23/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + +ID AL++N+ + G AR AVVK NAYG G + A AL + F Sbjct: 3 RPIAARIDGGALRHNYLLARNQARRGEGRARAWAVVKANAYGHGLLRAARALADV-ADGF 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 + +EE V+LR + I +L G + + + + ++ + + S V Sbjct: 62 ALLDLEEAVRLRDAGIRQPILLLEGFFEAADLAVCAAHDLTLVVHRLEQLQMLRRASLPV 121 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQL 179 P L++++G NRLGL+ E +++H A AD D + QL Sbjct: 122 RLPIFLKLNSGMNRLGLTAAELPAVRRELAASPAVSAVTLMTHFAEADGDGGEACITWQL 181 Query: 180 ERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQ 233 ERF +++ + SLA+S+ IL P RPGI LYGG+ ++ ++ Sbjct: 182 ERFAGMLADWPEAATWPVSLANSAAILRYPQTARDWVRPGIMLYGGSPFADQDAASLGLK 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T +RI+ +++ GE V YGG R + + V A GYADGYP G Sbjct: 242 PVMTLHSRILAVQEIAVGERVGYGGTFVARRPTRVGVVACGYADGYPRHAPG-------- 293 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G + G LG+++MDM D+TD + V + ++G + D VA A+GT Sbjct: 294 ---GTPIVVAGQATTTLGRVSMDMLACDLTDLPAAGVNSPVVLWGEGLAADAVAAAAGTI 350 Query: 354 NYDLLVRIGTRYA 366 +Y+L + R Sbjct: 351 SYELFCALARRVP 363 >gi|315660233|ref|ZP_07913088.1| alanine racemase [Staphylococcus lugdunensis M23590] gi|315494660|gb|EFU83000.1| alanine racemase [Staphylococcus lugdunensis M23590] Length = 399 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 153/382 (40%), Gaps = 30/382 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S+++ R + +DL A+ NN+ L N V+K N YGLG +IA L + G Sbjct: 19 SDKYYRNTYINVDLAAINNNYRQFTQLHDNKTVIPVIKANGYGLGSVQIAQYLVDHGASF 78 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN--LIPVISSVPQLTFYSKLMS 117 F V +++E ++LR++ +A+I +L I + S + Sbjct: 79 FAVATLDEAIELRMHGIKAQILILGVIPIEDINKAIQHRVAITVPSKSWLSSAIKAINDD 138 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++DTG RLG+ Q E H + + +H ACAD+P Sbjct: 139 NEKRLWLHIKLDTGMGRLGIKNQAEYHQTIHLIEQHEHLVFEGVYTHFACADEPGDSA-Q 197 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDK----INKSHP 231 Q + F+T ++ A +S L + R GISLYG Sbjct: 198 QQYQCFKTWVTSTDMPRYVHAQNSAGALMIDADICNAVRLGISLYGYYPSEYVKEETDIE 257 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q V +I+ ++ GE VSYG I + IGYADGY + G Sbjct: 258 LQPSVELMTQIVQTKELQPGESVSYGSTYTAQSPIKIGIIPIGYADGYLRIMQGH----- 312 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 +KG ++G++ MD T+ I D I GD + + +D +A Sbjct: 313 -------FVNVKGQQCEVIGRVCMDQTIIKIND--DIVEGDEVCVISKQQDSIQSVDAIA 363 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 T NY++L +G R + Y Sbjct: 364 KQQKTINYEVLCNLGRRLPRIY 385 >gi|111023143|ref|YP_706115.1| alanine racemase [Rhodococcus jostii RHA1] gi|110822673|gb|ABG97957.1| alanine racemase [Rhodococcus jostii RHA1] Length = 400 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 156/376 (41%), Gaps = 26/376 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL A+ +N + + +A AVVK + Y G +A A AG + VT+V E Sbjct: 30 AVVDLDAIAHNVRILRDSARDAAMMAVVKADGYNHGAVPVARAALAAGASELGVTTVSEA 89 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYALQ 127 + LR A + + +SS + S G + ++ Sbjct: 90 LTLRRAGIDAPVLAWLHTVDADFAPAIAAGVELGVSSPRHLAAVVAAARSVGTTAIVTIK 149 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRT 184 VDTG NR G++ E + + I SHLA AD+P Q +R + Sbjct: 150 VDTGLNRNGVAPDELAQVLVDLARAQAEGSVRLRGIFSHLAHADEPHHAWIDSQRDRLIS 209 Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTA 238 I+ K L++S+ L P+ F + RPGI++YG + ++ +T Sbjct: 210 AIADAKRQGLVPEVVHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPELGQFGLRPAMTL 269 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +R+ L++K AGE VSYG Q RD+ +A+ GYADG P +LSG Sbjct: 270 RSRVALVKKVAAGEGVSYGHQWVAPRDTTVALLPFGYADGLPRSLSGRF----------- 318 Query: 299 KGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 + + P +G++ MD + D+ D + GD FG + A T Sbjct: 319 EVQLGAQRRPGIGRVCMDQVVVDLGPDGGGVREGDTAVFFGNGDLGEPNAQAWADELDTI 378 Query: 354 NYDLLVRIGTRYAKFY 369 +Y+++ + R + Y Sbjct: 379 HYEVVTGVRGRTVRSY 394 >gi|134094965|ref|YP_001100040.1| alanine racemase 2, PLP-binding, catabolic [Herminiimonas arsenicoxydans] gi|133738868|emb|CAL61915.1| alanine racemase, catabolic [Herminiimonas arsenicoxydans] Length = 348 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 93/356 (26%), Positives = 151/356 (42%), Gaps = 19/356 (5%) Query: 17 KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76 ++N + ++R AVVK NAYG G E+ + V+ +LR Sbjct: 2 RHNLRVAKNCAPHSRILAVVKANAYGHGLERGMRGFAE--ADGLGLIEVDNAARLRQLGW 59 Query: 77 QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLG 136 Q RI +L G + + I + + + S L++++G NRLG Sbjct: 60 QKRILLLEGFFDADDLQTIAVHQIDTVVHCVEQLQMLEQASLNAKLDVHLKINSGMNRLG 119 Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERFRTLISHYKGIEA 194 D + I+H A A++ ++ S QL+RF+T G + Sbjct: 120 FMPAVCRDIYQRLRAIPAVRNISFITHFANAENAANANLPLSEQLQRFQTATQGLPG-DR 178 Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPMQTVVTAEARIILIRKALAGE 252 L++S+ L+ P RPG+ LYGGT + +Q +T + II I+ AG+ Sbjct: 179 CLSNSAADLMHPECAADWVRPGVMLYGGTPADTSAAAFGLQPAMTLSSEIIGIQHIAAGD 238 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 V YG + I V A GYADGYP G + G ++G+ Sbjct: 239 AVGYGSSFVASGPMTIGVVACGYADGYPRHA-----------PSGTPVIVDGVRTQMVGR 287 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 ++MDM D+T + VG + ++G + +D+VA A+GT Y+L+ I R + Sbjct: 288 VSMDMITVDLTPVATAGVGSPVILWGQGLPIDEVANAAGTVGYELMCAIAPRV-RI 342 >gi|326774015|ref|ZP_08233297.1| alanine racemase [Actinomyces viscosus C505] gi|326636154|gb|EGE37058.1| alanine racemase [Actinomyces viscosus C505] Length = 447 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 161/415 (38%), Gaps = 65/415 (15%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R +DL A+ +N + ++G AVVK +AYG G +A +AG V + E Sbjct: 33 RAVVDLAAVAHNGRRLAQVAG-VPWMAVVKADAYGHGLGPVALTALSAGASWLGVAQLAE 91 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-----------------------S 104 + LR +A + G Q + L + S Sbjct: 92 ALTLRALLDEAGVSRPVGEPTSQAPRLLTWLLPVMEPDRAAAEDSPLRAALAADLDLSVS 151 Query: 105 SVPQLTFYSKLMSCGVSHPY-ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--- 160 ++PQL S L+VDTG +R G +++E + + Sbjct: 152 TLPQLEALSAAARAQGRAARLHLKVDTGMSRGGATVEELPALAAALRRAEDEGTVDVVGL 211 Query: 161 ISHLACADDPSSHVNSVQLERFRTL-----ISHYKGIEASLASSSGILLGPNYHFQLTRP 215 SHL+ AD+P+S LER+R + LA++ G+L P L R Sbjct: 212 WSHLSRADEPASGSTEEHLERYRQAEQVVLAAGLNPPTHHLAATGGLLWHPQARMDLVRA 271 Query: 216 GISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271 GI +YG + ++ + E+ ++ +++ AG+ VSYGG D + + Sbjct: 272 GIGMYGLSPDPSVATGAELGLRPAMRLESPLVQVKRIEAGQAVSYGGTWSAPTDRWVGLV 331 Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327 +GY+DG P S G + M ++G++ MD + D+ ++ Sbjct: 332 PLGYSDGIPRAAS-----------SAGPVGVGSLMTSVVGRVCMDQVVIDLGPAVDETGA 380 Query: 328 -----IEVGDYIQIFGPD--------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 VGD ++G D+ A A GT NY+++ R+G R + Y Sbjct: 381 PLPAAARVGDTAVLWGAPAVSDQEAVPTADEWAQACGTINYEIVTRLGARVPRCY 435 >gi|119963624|ref|YP_947004.1| alanine racemase [Arthrobacter aurescens TC1] gi|119950483|gb|ABM09394.1| alanine racemase [Arthrobacter aurescens TC1] Length = 390 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 156/378 (41%), Gaps = 31/378 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL+A+ +N ++ + AVVK NAYG G ++A AG + E + L Sbjct: 2 DLSAISDNIQALKKRTEAPFFMAVVKGNAYGHGLVEVARTAVKAGADWLGTAQLSEAIAL 61 Query: 72 RLYTPQARIFVLYG---IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQ 127 R I + + ++ + SV QL + + G L+ Sbjct: 62 RQAGITVPILSWLYLASQTSATIREALENDIDVSLGSVGQLEVLAGIAKRLGRPAVVHLE 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNSVQLERFRT 184 +D+G +R G ++ + + +L I +HLA AD P+ N + F Sbjct: 122 LDSGLSRGGARKEDWAELVAQARQAELAGNLRVRGIWTHLAWADVPAHPGNITAVAEFED 181 Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236 + ++SS+ IL P +HF + R G+++YG + ++ + Sbjct: 182 AVREAHQAGLAPELRHVSSSANILDRPEFHFDMVRAGLAIYGLAPADHLDPADFGLRPAL 241 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + A +++++K AG VSY Q + + +GYADG P +SG Sbjct: 242 SVTAPLVMLKKVPAGTGVSYEHQAITYEPRYLGLIPLGYADGIPKGISGRSV-------- 293 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVALASG 351 I G VP++GK+ MD M D+ D+ I+VGD +FG DD A G Sbjct: 294 ---VNIGGRTVPVIGKVCMDQFMVDLGPDASGIDVGDTAVLFGDPACGAASADDWGAAIG 350 Query: 352 TTNYDLLVRIGTRYAKFY 369 + +++ RI R + Y Sbjct: 351 SHGDEIINRIAPRLPRAY 368 >gi|42524510|ref|NP_969890.1| hypothetical protein Bd3124 [Bdellovibrio bacteriovorus HD100] gi|39576719|emb|CAE80883.1| alr [Bdellovibrio bacteriovorus HD100] Length = 402 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 168/401 (41%), Gaps = 45/401 (11%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M +I+L LK+N + A +VK NAYG G ++A L + G++ Sbjct: 1 MEMYRRTFAEINLDHLKHNIQVLQKAFPQAPFLCPMVKANAYGHGDVQLARFLESLGIKH 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EEG+ LR A I V G + I + N+ PV+SS Q+ Sbjct: 61 LGVCLIEEGLLLRRSGVNAEILVFRGFDREGAEKIIEYNMTPVVSSWEQIDHLE--AVAS 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH--VNSV 177 L+ DTG NRLG +EA + K +L +++HL +D + +++ Sbjct: 119 DPVGIHLKFDTGMNRLGFRPEEAQKLFDRLWQNKKIRLKALVTHLFNGEDATDSQGISAR 178 Query: 178 QLERFRT--LISHYKGIEASLASSSGILL-------------GPNYHFQLT-RPGISLYG 221 QL + I +S+GI+ P + RPG+ +YG Sbjct: 179 QLRDLNRVSTVFKPFNIFCHALNSAGIMSALQMKDAGNTPADHPLFMQNWGLRPGLMIYG 238 Query: 222 GTDKINKSHPM-QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280 S + V++ ++ + R+ GE VSYGG +DS+IAV IGYADGY Sbjct: 239 YNPLGQNSFGGLKPVMSLKSHVATYRQLHIGETVSYGGTWTAKQDSVIAVVPIGYADGYH 298 Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT------DSLSIEVGDYI 334 LS S G VP++G I MD M D+T D + + Sbjct: 299 RILSNQSS-----------VVFAGKRVPLVGSICMDYLMLDVTEVVRGKDLKDFK-DQEV 346 Query: 335 QIFGPD-----IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 +FG + +++A+ + + +++L +G R + Y+ Sbjct: 347 TLFGFASDGSFLSPEELAVQAKSITWEMLTSVGERVPRIYS 387 >gi|167646468|ref|YP_001684131.1| alanine racemase [Caulobacter sp. K31] gi|167348898|gb|ABZ71633.1| alanine racemase [Caulobacter sp. K31] Length = 360 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 136/363 (37%), Positives = 191/363 (52%), Gaps = 14/363 (3%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 RL +DL AL +N + A +G A A VK + YGLG +A L++ G + F+V + E Sbjct: 6 RLTLDLDALASNHAVLRAAAGGAEIAPAVKADGYGLGAALVAGRLWDEGARSFYVARLSE 65 Query: 68 GVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 G+ LR A I++L G+ PG I +L PV++S+PQ+ ++ G + A Sbjct: 66 GLALRRALGDRAAAIYLLDGVTPGSAPAIEGASLTPVLNSLPQVEAWNSHAR-GRALDAA 124 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L +DTG NRLGL +EA K ++L+ISHLACA +P +N+ QL RF Sbjct: 125 LHIDTGMNRLGLRPEEAAVLVAAMDRLKHVNITLVISHLACASEPDHPLNARQLARFTEA 184 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + + SLA+S GI LG YHF RPGISLYGG + +Q VVT EA ++ Sbjct: 185 AALFPNARRSLANSGGIFLGDPYHFDQCRPGISLYGGGPRDIPDTRIQAVVTLEAPVLQT 244 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE + YG + +A+ A GYADG P G + G Sbjct: 245 RVVPRGESIGYGAAFTAQETTRVAILAAGYADGVPRAA-----------HPRGAVWFDGA 293 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P+LG+++MD+ DITD + G +QI GPD+ +DD A A+GTT Y+LL RI R Sbjct: 294 RRPMLGRVSMDLIAVDITDCDAARPGAMMQILGPDVLVDDAAAAAGTTAYELLTRIAPRA 353 Query: 366 AKF 368 + Sbjct: 354 RRV 356 >gi|320528033|ref|ZP_08029199.1| alanine racemase [Solobacterium moorei F0204] gi|320131659|gb|EFW24223.1| alanine racemase [Solobacterium moorei F0204] Length = 372 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 152/367 (41%), Gaps = 23/367 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++++L ++ N + + + AV+K +AYG G +A A+ AG + V+S Sbjct: 3 RKTWMQVNLDKIERNLIQLKEIC-QKKIIAVLKADAYGCGDIHVARAVLEAGAEMIAVSS 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR + ++ +L I+ + S + K G Sbjct: 62 LDEALVLRNEGYEGKLLILGATEASDIPILIKHGISCTAYSTEWVIKAIKQNCEG--LHV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG +R+G + L + I +H CAD S+ + ++Q +F+ Sbjct: 120 HLKVDTGMSRIGFRTIDELHLAFEKLQAANCDMEGIFTHFCCADSNSN-LTNLQFSKFKE 178 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + + +S R GISLYG + P ++ + + Sbjct: 179 AVESFSYTFPWVHCDNSDATAFFQEDTSNACRIGISLYGISTYEKSLEP---AISLYSEV 235 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 ++++ AG+ V YG D +IA IGYADG+ G K ++ Sbjct: 236 VMVKHMHAGDTVGYGATYTAKDDEIIATLPIGYADGFVRANQGR------------KVYV 283 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G I+G++ MD M + + ++ ++IFG I L+ +A T Y+++ + Sbjct: 284 DGQYAEIVGRVCMDQVMIHLEQEVPVK--TVVEIFGEHISLEKMAEELNTIPYEIICLLS 341 Query: 363 TRYAKFY 369 +R + Y Sbjct: 342 SRVTRRY 348 >gi|308184724|ref|YP_003928857.1| alanine racemase [Helicobacter pylori SJM180] gi|308060644|gb|ADO02540.1| alanine racemase [Helicobacter pylori SJM180] Length = 377 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+H++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVDTASLRHNFHAVKSIVPKDACIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L ++ S+ Q +S++ + Sbjct: 68 ALELRSHFSKTPILILGYSPNANASMLVDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHI 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +ARI+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKARIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-EAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|71065518|ref|YP_264245.1| alanine racemase [Psychrobacter arcticus 273-4] gi|71038503|gb|AAZ18811.1| alanine racemase [Psychrobacter arcticus 273-4] Length = 368 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 175/373 (46%), Gaps = 25/373 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + I A+ +N + + + + A+VK NAYG G + PAL V ++ E Sbjct: 4 ITIKPAAITHNLNQVKKFAPETKVLAMVKANAYGHGVAAVLPALQQ--ANGVGVATLIEA 61 Query: 69 VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 ++ R I ++ G + + + ++ VI PQLT+ + Sbjct: 62 LEARQLGWDKTIALIEGAFTVDEWRQAIEHDISCVIHHAPQLTWALEHTPPVHCATRVVW 121 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L+ +TG NRLG + + G ++ +H A ADD + +N++Q++RF + Sbjct: 122 LKYNTGMNRLGFNADGVIVAAQRLHEA--GYQLILTTHFANADDQTHPLNAMQIQRFNDM 179 Query: 186 ISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVT 237 +S + ++ SL +S+GI+ P +H RPGI LYG T I++S +Q + Sbjct: 180 LSTLQETVSADVQGSLCNSAGIVNFPTHHHDWVRPGIMLYGSTPVIDQSAYELDLQAAME 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A+II ++ AGE + YG + +D+ A+ ++GY DGYP ++ Sbjct: 240 FSAQIIALQTVNAGEGIGYGSRWLAQQDTRTALVSVGYGDGYPRVIADKTYVTVIDT--- 296 Query: 298 GKGFIKGYMVP--ILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTN 354 I P ++G++ MDM + D+++ + + ++G ++D+VA +GT + Sbjct: 297 ----INHQSYPCTVIGRVAMDMIVIDVSNVPEGTALNSKVILWGNAPRVDEVATHAGTIS 352 Query: 355 YDLLVRIGTRYAK 367 Y+LL R+ R + Sbjct: 353 YELLCRLSLRPQR 365 >gi|257066468|ref|YP_003152724.1| alanine racemase [Anaerococcus prevotii DSM 20548] gi|256798348|gb|ACV29003.1| alanine racemase [Anaerococcus prevotii DSM 20548] Length = 373 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 26/368 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +++D+ ++ N ++ +S N AVVK NAYGLG IA V F V + E Sbjct: 6 IEVDIDKIQRNIENIKKISKNKNICAVVKANAYGLGATVIAKY-IENQVSYFAVANFLEA 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 LR+ I +L + + D ++ I + +K + + + + Sbjct: 65 KNLRIAGITKPIMILGFVSVEEANECVDYDIEIPIYDLSYAERINKSIVGDLKV--HIAL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---RTL 185 DTG +RLG E + ++ SH + AD+ Q E+F R Sbjct: 123 DTGHSRLGFREFEFDRII-KLKQLERLKIKGAFSHFSTADEEDKTFTQEQYEKFERIRKK 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEAR 241 + IE ++S + + + R GI++YG K ++ ++R Sbjct: 182 LDDQFNIEIFHIANSAASIYHDLISDMDRIGIAMYGIYPSDYLRERKDIRLEQAFLLKSR 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + +++ G+ VSYG K IA IGYADGY S + G+ Sbjct: 242 VSFVKEINEGDSVSYGRAFKAKSRMKIATIPIGYADGYFRAFSNI-----------GEVL 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 I G + + G++ MD M D++D ++ D + ++ + + A T Y+L+ Sbjct: 291 INGKISKVCGRVCMDQIMVDVSDI-DCKIEDEVILY---PDIYEEANKIVTIPYELMTSF 346 Query: 362 GTRYAKFY 369 R + Y Sbjct: 347 DMRLTRVY 354 >gi|254852379|ref|ZP_05241727.1| alanine racemase [Listeria monocytogenes FSL R2-503] gi|258605686|gb|EEW18294.1| alanine racemase [Listeria monocytogenes FSL R2-503] Length = 336 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 142/349 (40%), Gaps = 28/349 (8%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 AVVK NAYG G ++A AG + F V ++E + LR Q ++ G ++ Sbjct: 3 LWAVVKANAYGHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKED 62 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSF 150 + N I S + + ++ L+VD+G RLG+ EA Sbjct: 63 ANLAAKNHI---SLTVFREDWLEDLTLEAPLRIHLKVDSGMGRLGIRTTDEARRIETTIA 119 Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA--SSSGILLGPNY 208 QL I +H A AD + QL +F+T+++ K + +S+ LL P Sbjct: 120 KDNQLQLEGIYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQPQI 179 Query: 209 HFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 F R GIS+YG T ++ + ++ +++ G+ VSYG T Sbjct: 180 GFDAIRFGISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATE 239 Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324 +A IGYADG SG + G + PI+G++ MD T+ + Sbjct: 240 REWVATLPIGYADGLIRHYSGF------------HVLVDGELAPIIGRVCMDQTIIKLPR 287 Query: 325 SLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + G + I G D I DD A T NY++ + R + Y Sbjct: 288 EF--QTGSKVTIIGTDHGNTITADDAAHYLDTINYEVTCLLNERIPRKY 334 >gi|293190212|ref|ZP_06608708.1| alanine racemase [Actinomyces odontolyticus F0309] gi|292821028|gb|EFF79981.1| alanine racemase [Actinomyces odontolyticus F0309] Length = 422 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 145/399 (36%), Gaps = 47/399 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+++N + A + A A VK NAYG G +A A + G V + E Sbjct: 19 VDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAALDGGADWLGVAQLAEAFT 78 Query: 71 LR----LYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 LR A I + ++ +S + G Sbjct: 79 LRRGLDEAGVARADAPILAWISTSSSDFAAAIEADIDLSVSWTWVLADICAAAREAGRPA 138 Query: 123 PYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPS---SHVNS 176 +++DTG +R G +L + + + L + SH++ ADDPS + + Sbjct: 139 RVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAWSHMSRADDPSEAGNASTA 198 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227 + F + + L+++SGIL H+ + R GI LYG + Sbjct: 199 SHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMVRAGIGLYGLSPDPEVATS 258 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + + + A + ++ G SYGG I + +GY DG S Sbjct: 259 EQLGLTPALELRAPLTSVKVIEEGTPASYGGTWVAPTRRWIGLVPLGYGDGILRAASNQ- 317 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-------------SIEVGDYI 334 + V G P++G++ MD M D+ + GD Sbjct: 318 ---ARVVVHTASGPFN---APLIGRVCMDQFMVDLGPAEGSPGTPTARSGQAPAIPGDIA 371 Query: 335 QIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369 +FG I DD A A+GT NY+++ +G + Y Sbjct: 372 TLFGSGISGEALADDWAQAAGTINYEIVTHLGAHIPRIY 410 >gi|308178091|ref|YP_003917497.1| alanine racemase [Arthrobacter arilaitensis Re117] gi|307745554|emb|CBT76526.1| alanine racemase [Arthrobacter arilaitensis Re117] Length = 399 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 165/376 (43%), Gaps = 26/376 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R IDL+A++NN ++ + A AVVK +AYG G ++A A G + V E Sbjct: 26 RAVIDLSAIRNNVKQISDVVAPAAVMAVVKADAYGHGAIQVAKAALEGGARWIGCAHVTE 85 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + LR A + + D L +S + + ++ Sbjct: 86 ALALREAGIDAPMLAWLHTEDTPFEAAIDAGLDLGVSGWELERVAAAARAVQTPARIHIK 145 Query: 128 VDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 VDTG R G +++ + L+ + + L + I SHLA AD+P QL F T Sbjct: 146 VDTGLGRNGSTMEALPDLLNRASDFQEEGLLRAVGIFSHLAVADEPERPETDEQLAVFNT 205 Query: 185 LISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVV 236 I + +A++ GIL P+ H+++ R G+ LYG + +S ++ + Sbjct: 206 AIELIEAAGFDLEVRHIANTPGILSRPDSHYEMVRLGLGLYGLSPFEEDTPQSFGLRPAM 265 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + R+ ++K G+ VSYG K ++ + + +GYADG P + Sbjct: 266 TVKTRVANVKKVRPGQGVSYGLNYKTEGETYLGLIPMGYADGLPR------------IAT 313 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIE--VGDYIQIFGP-DIKLDDVALASGTT 353 G + G P+ G+I MD + D+ ++ E +G IFG ++ A A+ T Sbjct: 314 GAPVTVNGRTYPVRGRIAMDQCVIDLGADINPEDFLGAEAIIFGDGGQSVNTWAYAANTI 373 Query: 354 NYDLLVRIGTRYAKFY 369 NY+++ RI R ++Y Sbjct: 374 NYEVVTRISPRVPRYY 389 >gi|213859876|ref|ZP_03385580.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 320 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 97/331 (29%), Positives = 145/331 (43%), Gaps = 19/331 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEAR 241 G + S+A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 182 CQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSS 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 241 LIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVL 289 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGD 332 + G VPI+G++ MDM D+ + GD Sbjct: 290 VNGREVPIIGRVAMDMICVDLGPNAQDNAGD 320 >gi|262369147|ref|ZP_06062476.1| alanine racemase 2 [Acinetobacter johnsonii SH046] gi|262316825|gb|EEY97863.1| alanine racemase 2 [Acinetobacter johnsonii SH046] Length = 365 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 86/373 (23%), Positives = 155/373 (41%), Gaps = 27/373 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I +L++N + N++ AVVK NAYG G E++ A + F + Sbjct: 3 RPITAVIHSQSLQHNLNVARTKMPNSQVYAVVKANAYGHGIERVYQAFKS--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R I +L GI Q+ + L I S QL + ++ Sbjct: 61 LAEAKRIRALGWTGPILLLEGIFSEQDLFDCHELGLSFSIHSEYQLEWLARF-PLEAQFD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLER 181 L++++G NRLG ++ + Q + H + AD + Q + Sbjct: 120 VYLKMNSGMNRLGFRPEQYRQVWQQLSSLSQVQRLTHMMHFSDADGERFGRDGIAHQCQL 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVT 237 F + G S+++S+ IL + R GI LYG + + +Q ++ Sbjct: 180 FDAITHDLPGAR-SVSNSAAILRHGQLQSDVIRSGIMLYGSSPDYPSHSIQDWDLQPAMS 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I I++ AG+ V YG + D + + A GYADGY G Sbjct: 239 LRSELIAIQQLKAGDSVGYGSKFIAETDMRVGIVACGYADGYQRI-----------TATG 287 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G ++G+++MDM D++ + +VG + ++G + +D+VA SGT Sbjct: 288 TPILVDGQRSSLVGRVSMDMLAVDLSHLPNAQVGSEVVLWGTSKQGTVLSIDEVAAGSGT 347 Query: 353 TNYDLLVRIGTRY 365 Y+L+ + R Sbjct: 348 IGYELMCAVTARV 360 >gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl- tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Waddlia chondrophila WSU 86-1044] gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl- tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Waddlia chondrophila WSU 86-1044] Length = 813 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 153/373 (41%), Gaps = 30/373 (8%) Query: 10 KIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +I+L A+ +N + L+ + A+VK AYG +A L G++ V+ ++EG Sbjct: 449 RINLAAIASNIKQIRSRLTPHTEIMAMVKATAYGTQDALMAKFLKTEGIRRLGVSYIDEG 508 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR IFVL EK + I V G L + Sbjct: 509 ISLRKEGVDQDIFVLNAAPYEIEKAVSWQFEIAVNDKETIDQIGRMSSERGTITRVHLHI 568 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLIS 187 +TG +RLG +EAL +L +++H AC+D+P Q F I Sbjct: 569 NTGMSRLGCRPEEALPLARIIQAHPHLKLEGVMTHFACSDNPDEDTFTLEQSRIFDHSIE 628 Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + +S+ L + + R G++LYG ++ +RI Sbjct: 629 AIEQEGISIPFRHACNSAAALRLHFPQYNIVRIGMALYGLCP------GGTLALSLHSRI 682 Query: 243 ILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + I + GE +SYG + R+ IAV IGY DG L S GK Sbjct: 683 VGINHCIKGETISYGRSYTVQREREKIAVIPIGYYDGLHLNYS-----------SKGKVM 731 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYD 356 I G PI+G+I MD M DIT +GD + IFG D + +++A ++ Y+ Sbjct: 732 IHGAEAPIVGRICMDYMMVDITHIPDACIGDPVLIFGEDAEGNVLSPNELAEQGNSSVYE 791 Query: 357 LLVRIGTRYAKFY 369 L+ +G R + + Sbjct: 792 LISCLGPRIQRVF 804 >gi|326565252|gb|EGE15437.1| alanine racemase [Moraxella catarrhalis 12P80B1] Length = 383 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 168/387 (43%), Gaps = 37/387 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M++ + I AL +N + L + A+VK +AYG G + PAL + Sbjct: 1 MNTMRSTSITIHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPALIH--ADG 58 Query: 60 FFVTSVEEGVKLRL-----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-- 112 F V + E + ++ + + + + K+ D + +I QL + Sbjct: 59 FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 118 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 + H L+ +TG +RLG + + + + ++ SH ACADD S Sbjct: 119 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADAG--YRLILTSHFACADDKSH 176 Query: 173 HVNSVQLERFRTLISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 +N+ Q+ +F ++ + L +S+GI + H R GI+LYG + Sbjct: 177 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 236 Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K+ + +T A+++ I AG+ + Y + IAV +IGY DGYP Sbjct: 237 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPR---- 292 Query: 286 LDSEHSPSVFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 V +G K + ++ I+G++ MDM M DI D L I + + ++G Sbjct: 293 --------VVMGAKVSVTDTSGNRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDS 343 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAK 367 +D+VA+ +GT Y+L+ R+ TR + Sbjct: 344 PTIDEVAMCAGTIGYELMCRLTTRPKR 370 >gi|315453697|ref|YP_004073967.1| alanine racemase [Helicobacter felis ATCC 49179] gi|315132749|emb|CBY83377.1| alanine racemase [Helicobacter felis ATCC 49179] Length = 378 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 160/388 (41%), Gaps = 31/388 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++ID AL +N+ M+AL G AVVK NAYG G + + G Sbjct: 1 MRPTRASYVEIDTHALAHNFQVMHALLGTKMSVMAVVKANAYGCGALEASAVFLEQGAGY 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 V + +E ++LR Q I +L + + N+ + Q ++S Sbjct: 61 LGVATYDEALELRARFAQVPILILGFTPNHMAQELIQANITQTLFCEKQARYFSDAALKL 120 Query: 119 GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G ++VDTG +RLG Q++ K +L I +H + AD + Sbjct: 121 GRKLKVHIKVDTGMSRLGFFPTQQSAIAIAKIAQLKGLELEGIFTHHSNADALYKNYAQE 180 Query: 178 QLERFRTLISH--YKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI------ 226 Q RF + G+E +A+S+ L P++ + R G++LYG I Sbjct: 181 QATRFIEFLEQLRRMGLEFKYQHMANSACALSMPSFGMNMARIGLALYGLHPSIYTQDAL 240 Query: 227 -NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K ++ V+T +A+I+ ++ AG LV YG T+ + + V +GY DG+ L Sbjct: 241 EKKGFALRHVLTLKAQIVSLKDIPAGRLVGYGEDYYCTQTTRVGVLPLGYGDGFSKILGN 300 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK--- 342 G + G VP++G + MD D+ D + GD + + G Sbjct: 301 -----------KAWGLLHGQKVPVIGGVCMDQCFIDVGDI-KAQEGDEVILLGDPQSGAM 348 Query: 343 -LDDVALASGTTNYDLLVRIGTRYAKFY 369 D+A G NY+ + + R + Y Sbjct: 349 GAGDIAKILGIINYEAITMLTKRLPRVY 376 >gi|222151977|ref|YP_002561137.1| alanine racemase homolog [Macrococcus caseolyticus JCSC5402] gi|254802369|sp|B9E8C3|ALR_MACCJ RecName: Full=Alanine racemase gi|222121106|dbj|BAH18441.1| alanine racemase homolog [Macrococcus caseolyticus JCSC5402] Length = 380 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 26/379 (6%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S+ + R + ++L A+ +N+ + L N AV+K N YGLG IA L +G Sbjct: 2 SDRYYRPTFVNVNLDAISSNFKHIEKLHPNKTVIAVIKANGYGLGSVNIAKHLMTSGTDF 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC- 118 F V +++E ++LR++ +A+I VL + P + L + S+ + Sbjct: 62 FAVATLDEAIELRMHGIKAKILVLGVVDPKHIRQASRHRLALTAPDAKWVEDASRYIEAE 121 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++VD+G R+G+ ++A D + + + + D + + Sbjct: 122 DKPVWLHIKVDSGMGRIGVQTKQAYDMVVDKVAAVEQFIFEGVFTHFSSADEDNALTERA 181 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQT 234 ++F +I+ K +S+ L R GISLYG + +Q Sbjct: 182 YDKFLGIINDNKPQYIHCQNSAATLRYDCSECNAVRLGISLYGYYPSEFIRAVSNVKLQP 241 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V + I+ +G+ VSYG D ++A IGYADG P + G + Sbjct: 242 AVQLVSTACFIKHIKSGDTVSYGATYTAQSDEVVATFPIGYADGLPRAMQGYNINL---- 297 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALAS 350 +G VPI+G++ MD M + D + G I + L+ VA Sbjct: 298 --------EGTEVPIIGRVCMDQMMARVPDDTLL--GAQCIIIDNNADSNQSLERVAQQL 347 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT Y++L + R K Y Sbjct: 348 GTITYEVLTSLSRRLPKRY 366 >gi|281357855|ref|ZP_06244341.1| alanine racemase [Victivallis vadensis ATCC BAA-548] gi|281315802|gb|EFA99829.1| alanine racemase [Victivallis vadensis ATCC BAA-548] Length = 377 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 173/383 (45%), Gaps = 27/383 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + L++DL L +N+H + R AV+K NAYGLG + +A + AG F Sbjct: 1 MNLESRVNLEVDLKKLADNFHEIRRRVSPCRLMAVLKANAYGLGVQPVAEVVKQAGAAAF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 V + E V+L + +L + P + + +I ++ + S G Sbjct: 61 GVAEINEAVELVPLG--LPVQILGNLLPDEIAPAVEYGVICPLNDLEMAKKISAEAVRQG 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + A+ VD+G RLG+ EA + +L I SH + A + QL Sbjct: 119 KTATGAVTVDSGMGRLGMPAAEAAEQILAMRGLPNLKLDGIYSHFSSAFMRYDDYSLGQL 178 Query: 180 ERFRTLISHYKG-----IEASLASSSGILLGPNY---HFQLTRPGISLYGGTD-KINKSH 230 F+TL++ KG +A+S + P+ F L R GI++YG D ++++S Sbjct: 179 ASFKTLLAELKGAGLEFPNVHMAASDALNNFPDSTRPPFTLARCGINMYGYYDNEVHQSM 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + VV + R+ +R AG + YG +L +D+ + A GYADG PL LS Sbjct: 239 RLAPVVELKTRLAAVRMLAAGSCIGYGRMHRLQKDTRVGTIAAGYADGLPLALSNR---- 294 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 G + G + P+LG+I+MD T + ++ + GD + G + L+D Sbjct: 295 -------GYVLVNGVLCPVLGRISMDYTTISLENAPEAQPGDEVVCIGGQDGRFVSLEDW 347 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A GT YDLL GTR + Y Sbjct: 348 AQLKGTHVYDLLCSFGTRVRRRY 370 >gi|86137544|ref|ZP_01056121.1| alanine racemase [Roseobacter sp. MED193] gi|85825879|gb|EAQ46077.1| alanine racemase [Roseobacter sp. MED193] Length = 345 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 184/365 (50%), Gaps = 27/365 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL I+L AL NW ++NA++ N TAAVVK N YGL ++A AL G ++FFV + E Sbjct: 4 ARLTINLDALVTNWQNLNAMT-NCETAAVVKANGYGLDAARVATALAKGGARNFFVAAAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EGV LR P I V G G +++ + L P+++S+ Q+ + + + H + Sbjct: 63 EGVALRRALGPGPGISVFSGHMEGDTRLLKEFQLAPMLNSLDQMLRHFETL---PGHTFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q+D+G NRLG+ E + L++SHLAC+D+P +N+ QL+ FR + Sbjct: 120 VQLDSGMNRLGMEPAEWAAVRDIAL---GQAPVLLMSHLACSDEPGHPMNAQQLQAFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SLA++ GILLG +YHF L RPG+ LYGG + VV + +I Sbjct: 177 TDG-LEVPRSLAATGGILLGRDYHFDLCRPGVGLYGGAPYGDA----MPVVQLDLPVIQT 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG S IA A GYADG L GG G Sbjct: 232 RDVAPGESVGYGNSWVAQVPSRIATVAAGYADGLHRAL-----------MTGGIDLFAGE 280 Query: 306 -MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 P++G+I+MD+ D+T + I +D +A A+GT Y++L +G R Sbjct: 281 ARCPVVGRISMDLVTVDVTALPETPA--SLSILNEVQTVDTLANAAGTIGYEMLTSMGHR 338 Query: 365 YAKFY 369 YA+ Y Sbjct: 339 YARTY 343 >gi|81429225|ref|YP_396226.1| alanine racemase [Lactobacillus sakei subsp. sakei 23K] gi|123563782|sp|Q38V64|ALR_LACSS RecName: Full=Alanine racemase gi|78610868|emb|CAI55920.1| Alanine racemase [Lactobacillus sakei subsp. sakei 23K] Length = 380 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 151/383 (39%), Gaps = 31/383 (8%) Query: 5 EFLRLKIDLTALKNNW-HSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 R+ +D A+ N + + L G + V+K NAYG G +A A AG F V Sbjct: 7 RPTRILVDQNAIYENIQNELKHLEGTDTVIFPVLKANAYGHGLIPVAEAAQAAGAAGFCV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTFYSKLMSCG 119 ++E + LR I VL P + ++ + + + + T ++ + Sbjct: 67 ALLDEALALRRANFTEPILVLGITQPSEIELAAANQISLTVGSLEWLQEATAIAQQVPYL 126 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSV 177 P L +D+G R+G+ + L + +H A ADDP Sbjct: 127 HPVPIHLSIDSGMGRIGMRDEAELLAAYTFIKAHSDYFDFEGVFTHFATADDPDDTYFKE 186 Query: 178 QLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHP 231 Q RF L++ + +S+ L + + R GISLYG + +P Sbjct: 187 QSARFNQLMTALPERPRFVHVSNSATSLWHAACNGNIIRMGISLYGLNPSGNAIPDLPYP 246 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ + E+ ++ +++ AG + YG + + I +GYADG+ + G Sbjct: 247 LKQALGIESELVFVKQVAAGTKIGYGATYEASEGEWIGTIPMGYADGWLRRMQGST---- 302 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + G I+G+I MD M + + G + G +I L +VA Sbjct: 303 --------VLVDGQRCEIVGRICMDQMMIRLPKRYPV--GTKVVFVGKSGDDEITLQEVA 352 Query: 348 LASGTTNYDLLVRIGTRYAKFYT 370 + T +Y+++ + R + YT Sbjct: 353 DYADTIHYEIICDLSDRIPRVYT 375 >gi|163839626|ref|YP_001624031.1| alanine racemase [Renibacterium salmoninarum ATCC 33209] gi|162953102|gb|ABY22617.1| alanine racemase [Renibacterium salmoninarum ATCC 33209] Length = 385 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 35/385 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ +DL +++N + +L A+VK +A+G G I+ A+ AG V Sbjct: 12 HDLATATVDLGIIESNVRFLKSLPDAERELIAIVKADAFGHGMIPISHAMLRAGADWLGV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 + E ++LR A IF + N+ ISS ++ S G+S Sbjct: 72 AHLSEAMELREAGITAPIFAWLATLDTDYHPGIEANIDLSISSRLDAVRIAEAASSVGMS 131 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQ 178 L++DTG +R G ++ + ++ I SHL+ + N +Q Sbjct: 132 AKVHLKIDTGLHRAGSPVELWPQLLAEISSADWAKSLHVAGIWSHLSDPGEAEGKANGIQ 191 Query: 179 LERFRT--LISHYKGIEA---SLASSSGILLGPN-----YHFQLTRPGISLYGGTDKINK 228 + F ++ GI+ L+SS+ + L+R G LYG ++ Sbjct: 192 YQAFTEAVAVAASFGIKPEYLHLSSSASVGRFGKASPGTAQLNLSRAGAGLYGID---DR 248 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ +T E+RI+ R+ AG VSYGG R + +A+ +GYADG P + Sbjct: 249 GVGVKPAMTLESRIMQFRRVPAGSAVSYGGDWVSDRATNLALVPLGYADGIPRCIK---- 304 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 G F +G +PI+G+I MD + D T L +EVGD + IFG + Sbjct: 305 --------GASVFCRGQRLPIVGRIAMDQFVVD-TGDLQLEVGDQVLIFGTGELGEPTAL 355 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 + A +GT +++ +G R A+ Y Sbjct: 356 EWAQWAGTIEHEIYTGLGPRVARRY 380 >gi|116669669|ref|YP_830602.1| alanine racemase [Arthrobacter sp. FB24] gi|116609778|gb|ABK02502.1| alanine racemase [Arthrobacter sp. FB24] Length = 402 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 157/382 (41%), Gaps = 31/382 (8%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++ +DL+A+ +N ++ S AVVK NAYG G +A +AG + E Sbjct: 18 QVSVDLSAISDNIRTLRQRSAAPHFMAVVKGNAYGHGLVDVARTALSAGADWLGTAQLHE 77 Query: 68 GVKLRLYTPQARIFVLYG---IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 + LR A + + + ++ + SV QL + + G Sbjct: 78 AIALRRAGITAPVLSWLYLAAASSETIREALEYDVDVSLGSVAQLDVVAGIARRLGRPAV 137 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVN----- 175 L++DTG +R G ++ + + + + +HLA AD P+ N Sbjct: 138 VHLELDTGLSRGGARAEDWAELVAAARTAERDGTLSVRGVWTHLAWADVPAHPANLAAVA 197 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPM 232 + + + + ++SS+ IL P + F + R G++ YG + + Sbjct: 198 AFEEAVLAARAAGLEPELRHVSSSANILDRPEFAFDMVRAGLAFYGLAPADHLAPADFGL 257 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +T A ++L++K AG VSY Q + + +GYADG P +SG Sbjct: 258 RPALTVTAPVVLVKKVPAGTGVSYEHQAITHEPRYLGLIPLGYADGIPKGISGRSLI--- 314 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDIK----LDDVA 347 + G VP++GK+ MD M D+ D+ + VGD +FG DD Sbjct: 315 --------LLGGRRVPVIGKVCMDQFMVDLGPDANGVAVGDTAVLFGDPRTGAASADDWG 366 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 A G+ +++ RI R + Y Sbjct: 367 AAIGSHGDEIINRIAPRLPRAY 388 >gi|256824606|ref|YP_003148566.1| alanine racemase [Kytococcus sedentarius DSM 20547] gi|256687999|gb|ACV05801.1| alanine racemase [Kytococcus sedentarius DSM 20547] Length = 391 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 145/382 (37%), Gaps = 28/382 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +D TA+++N +G A VVK YG G A A G V Sbjct: 11 YRAIVDATAIRDNLRRCVQWAGGADVMGVVKAGGYGHGALAAARAALAGGATLIGVAQPT 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125 E V LR + + ++ +S+ L G Sbjct: 71 EAVALRRAGIASEVLAWLLTPQADLDEAVAHDITLGVSAPWALDAVRDAARRAGRPVRVH 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSSHVNSVQLERF 182 L++DTG +R GL+ + D + + + + SHLACADDP Q + F Sbjct: 131 LELDTGMSRGGLAPSDWPDLFARARQAEREGSLTVQGVFSHLACADDPGHPATDHQRDAF 190 Query: 183 RTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 ++ LA+S+ L P+ + L RPG+ YG + + + ++ Sbjct: 191 ERGLAAAVRAGLDPRWRHLANSAATLTRPDLAYDLVRPGLVSYGLSPIPDLRTSQDLGVR 250 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T AR+ +R+ AG VSY + + V +GY DG P LSG Sbjct: 251 PAMTLVARLSAVRRVPAGTGVSYSHTHVTPTERWLGVVPLGYGDGVPRGLSGRGRVRVTG 310 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI----TDSLSIEVGDYIQIFGP----DIKLDD 345 GG P G++ MD + D+ D E GD + +FG D Sbjct: 311 --SGGAVD-----APFAGRVCMDQFVVDLGPVEGDRPPAEAGDEVVLFGDGADGGPTAQD 363 Query: 346 VALASGTTNYDLLVRIGTRYAK 367 A A T +Y+++ R+G R + Sbjct: 364 WATAMDTISYEIVTRVGPRVPR 385 >gi|327399718|ref|YP_004340587.1| Alanine racemase [Hippea maritima DSM 10411] gi|327182347|gb|AEA34528.1| Alanine racemase [Hippea maritima DSM 10411] Length = 373 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 152/385 (39%), Gaps = 30/385 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPAL-YNAGVQ 58 M+ + R + L L N+ ++ G + V+K +AYG G +IA L V Sbjct: 1 MNFHS--RSIVHLDNLHYNFGQISQFVGKSVNIIPVIKADAYGHGIVRIAKELSIYPNVA 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117 + ++EG LR + I + + + + ++ PV ++ L Sbjct: 59 YLGIAHIKEGAMLRKRGVKKPILAMSCLDSFDINTMHEFSITPVAHNITLLERLIDYAKL 118 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L+ DTG RLG+ +E + + + Sbjct: 119 NNTRIKLHLKFDTGMARLGIREEETQKTIELCKQNDKYIEIDGLMSHFSDSESDAQWTKK 178 Query: 178 QLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSH 230 QL RF+ +I +A+S IL + H RPG+++YG +N K Sbjct: 179 QLNRFKNIIKMFYDSGIYPRLTHIANSGAILSFKDTHLNCVRPGLAMYGYAPAVNLKKII 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V+ ++++I I GE +SY +D + V A GYADG P ++S Sbjct: 239 DLKPVLEIQSQLINIHVLKKGEGISYSRTFVADKDMKVGVVAFGYADGLPRSISNKF--- 295 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDV 346 + G +G + MDM M D+TD +V D + I G I D++ Sbjct: 296 --------YCIVNGQRSKSIGTVCMDMFMCDLTDI-EAKVSDDVIIMGQKNGISITADEL 346 Query: 347 ALASGTTNYDLLVRIGT--RYAKFY 369 A +GT +Y++L IG R + Y Sbjct: 347 AQKAGTISYEILTNIGKSIRVKRVY 371 >gi|67458471|ref|YP_246095.1| alanine racemase [Rickettsia felis URRWXCal2] gi|75537059|sp|Q4UNC8|ALR_RICFE RecName: Full=Alanine racemase gi|67004004|gb|AAY60930.1| Alanine racemase [Rickettsia felis URRWXCal2] Length = 462 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 191/467 (40%), Gaps = 117/467 (25%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV------ 62 L+I+L+A+KNN+ + + + A VK N YGLG +I+ AL + FFV Sbjct: 6 LEINLSAIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEEG 65 Query: 63 -------TSVEEGV---------KLRLYTP------------------------------ 76 S E V +R P Sbjct: 66 VNLRKALASWHESVFRHCEKNYTVIRRSNPVKNSVSQNFFNYFSGLQQCFAPRNDGSSIH 125 Query: 77 ---------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 I VL G+ + + NL PV++++ Q+ + K + P L Sbjct: 126 ATTPKALDNDVNILVLNGVFEHDALELIEYNLTPVLNNLKQIEIWQKFSNLKNRLLPCYL 185 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +TG NRLGL+ E +N K L IISHLA +++ + N QL RF+T + Sbjct: 186 HFNTGINRLGLTHNEIEQLINNRDLLKGLDLQYIISHLAVSEEIDNPYNLEQLNRFKTYL 245 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH---------------- 230 ++ ++ASLA+S GI LG +YHF L RPG +LYG I+ S+ Sbjct: 246 QYFPNVKASLANSGGIFLGQDYHFDLARPGAALYGLNPVIDLSNNLSYKEEFEGDTERRT 305 Query: 231 --------------------------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 +Q VT +A II ++ + Y R Sbjct: 306 AAYINVREDSSTGSTYKLPLEGGYSRGLQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTER 365 Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324 DS+IA +GYADG+ S G+ FI G VPI+G+I+MD+ D+TD Sbjct: 366 DSVIATLPLGYADGFSRNFSNQ-----------GEVFINGRSVPIVGRISMDLINIDVTD 414 Query: 325 SLSIEV--GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++ G +I G D +A GT Y++L +G+RY + Y Sbjct: 415 LPPLDIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRIY 461 >gi|159044921|ref|YP_001533715.1| alanine racemase [Dinoroseobacter shibae DFL 12] gi|226711041|sp|A8LRT3|ALR_DINSH RecName: Full=Alanine racemase gi|157912681|gb|ABV94114.1| alanine racemase [Dinoroseobacter shibae DFL 12] Length = 349 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 28/366 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L IDL A+ NW +++ + N R A AVVK + YGL ++A L AG + FFV Sbjct: 4 ATLSIDLDAIAANWRALDR-ASNRRVATGAVVKADGYGLDAGRVARTLAQAGARQFFVAV 62 Query: 65 VEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 EEGV LR P I V G G + I L P+I+S Q ++ HP Sbjct: 63 AEEGVTLRKALGPGPAINVFSGHMEGDTQAIAGARLTPMINSAEQ---LARHFEALPRHP 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + +Q+DTG NRLG+ E + L++SHLACAD+P N+ QL F Sbjct: 120 FGIQLDTGMNRLGMEADEWAAVAEFAL---GQGPKLVMSHLACADEPGHAANAAQLAEFH 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 L + SL+++ GILLG YHF +TRPGI LYGG VV ++ Sbjct: 177 RLTDGIT-VPRSLSATGGILLGEAYHFDMTRPGIGLYGGAPFGAAE----PVVRLSIPVV 231 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R AGE V YG D IA + GYADG +S ++ V Sbjct: 232 QVRAVTAGESVGYGCSWVAQSDGAIATLSAGYADGLIRAMSNRAMLYAGDVA-------- 283 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 P+ G+++MD+ D++ + + + P +D +A A+GT Y++L +G Sbjct: 284 ---CPLAGRVSMDLLTVDVSHLDEVPE--ALDLLCPAQGVDRLAEAAGTIGYEILTSLGP 338 Query: 364 RYAKFY 369 RYA+ Y Sbjct: 339 RYARHY 344 >gi|145589102|ref|YP_001155699.1| alanine racemase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047508|gb|ABP34135.1| alanine racemase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 374 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 16/370 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N + I A ++N + + L+ ++ +V+K AYG + L + F + Sbjct: 10 NRPILASIHTQAFRHNLNRVRELAPESKIWSVIKARAYGHCFDAALKGLSS--TDGFALL 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-DTNLIPVISSVPQLTFYSKLMSCG-VS 121 +++ V LR + + R+ +L G+ E + + + V+ Q+ + K + G Sbjct: 68 DIQDAVWLREHGWEGRVLLLEGLFHENELELAQELSCDLVVHCEAQVEWLEKYIEQGHKP 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLE 180 L+++TG NRLG + T G ++H A AD Q E Sbjct: 128 FSIFLKMNTGMNRLGFKPE--AYRTAFHRLHAFGCRMHHMTHFANADQADQRPTVGEQQE 185 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVV 236 F I G SLA+S+ IL N RPGI LYG + + ++ V+ Sbjct: 186 VFERTIDGLSG-PTSLANSAAILWHRNALGGWIRPGIMLYGASPTGIYADIEHAHLKAVM 244 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 ++ II I++ AG+ V YGG+ + I + A GYADGYP T Sbjct: 245 QLQSEIIDIQELKAGDGVGYGGRYQAPEAMRIGIVACGYADGYPRTAKDGTPVWVSIGAE 304 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G G + PI+G+++MDM D+ ++ ++G ++++G I +D+VA S T Y+ Sbjct: 305 DG----NGIVCPIVGRVSMDMLTIDLRNAPQAKIGSVVELWGDRIPVDEVARMSDTIGYE 360 Query: 357 LLVRIGTRYA 366 LL + R Sbjct: 361 LLCAVAPRVP 370 >gi|32491125|ref|NP_871379.1| hypothetical protein WGLp376 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31339945|sp|Q8D2H8|ALR_WIGBR RecName: Full=Alanine racemase gi|25166332|dbj|BAC24522.1| dadX [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 357 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 19/365 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++I AL +N ++ + ++ +V+K NAYG + L F V Sbjct: 3 RKTTIRISSNALASNLRTIKNYANKSKVWSVIKSNAYGHTIKAALKGLKE--TSGFAVLE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + E V LR I +L G + + I + Y K Sbjct: 61 LNEAVLLRENGWNGPILLLEGFFEESDLLEICQYKITTVIHNDWQLNYIKQYDIKSPIDV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++++G NRLG + ++ + ++ N K ++SH + S+ + Q+ R Sbjct: 121 YLKLNSGMNRLGFNEKDFIRTWYDLSNLKKISSLTLMSHFSLG--FSTKTVNKQMNIIRK 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEA 240 I LA+S+ I+ H RPGI LYG K NK ++ V+T E+ Sbjct: 179 -IFKILNPTLCLANSTAIIFHTYTHKDWIRPGIILYGILPKENKKISKKFNLKPVMTLES 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RII I+ + E + YG + +LI + + GYADGYP + F G Sbjct: 238 RIISIQNIKSKEYIGYGKNYYSNKSNLIGIVSCGYADGYPFS----------VPFSGTPV 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 F+ G I+G + MDM D+ D + ++G ++++G +I +++++ + TT+Y+L+ R Sbjct: 288 FVNGTRTQIIGSVCMDMLTIDLNDCPNAKIGSKVELWGNNISINEISKLANTTSYELMCR 347 Query: 361 IGTRY 365 I +R Sbjct: 348 ISSRV 352 >gi|93006286|ref|YP_580723.1| alanine racemase [Psychrobacter cryohalolentis K5] gi|92393964|gb|ABE75239.1| alanine racemase [Psychrobacter cryohalolentis K5] Length = 368 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 169/374 (45%), Gaps = 25/374 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + I A+ +N + + AL+ + A+VK NAYG G + PAL V ++ E Sbjct: 4 ITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQ--ADGIGVATLREA 61 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKII-FDTNLIPVISSVPQLTFY--SKLMSCGVSHPYA 125 ++ R I ++ G E + ++ VI PQL + + Sbjct: 62 LEARQLGWDKTIGLIEGAFTVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMVW 121 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++ +TG NRLG + Q + + G ++ +H A AD+ +N++Q++RF + Sbjct: 122 IKYNTGMNRLGFNNQTLSSAAKSLHDA--GYQLILTTHFANADNQDHPLNAIQIQRFNDM 179 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVT 237 +S I+ SL +S+GI+ P +H RPGI LYG I++S +Q + Sbjct: 180 LSTLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAME 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A+II ++ AG+ + YG + +D A+ +IGY DGYP ++G Sbjct: 240 FSAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDA--- 296 Query: 298 GKGFIKGYM--VPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKLDDVALASGTTN 354 + ++G++ MDM + D++ + + ++G +D+VA + T Sbjct: 297 ----VNQQRYSCAVIGRVAMDMIVIDVSAVPESSALNSKVILWGDAPHVDEVATHADTIG 352 Query: 355 YDLLVRIGTRYAKF 368 Y+LL R+ R + Sbjct: 353 YELLCRLSVRPNRI 366 >gi|308183092|ref|YP_003927219.1| alanine racemase [Helicobacter pylori PeCan4] gi|308065277|gb|ADO07169.1| alanine racemase [Helicobacter pylori PeCan4] Length = 377 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + IE + S N L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNR------ 301 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 302 -----TQVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|91064848|dbj|BAE93144.1| alanine racemase [Helicobacter pylori] Length = 377 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFPKTPILILGYSPNANASMLVDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLARALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|288818067|ref|YP_003432415.1| alanine racemase [Hydrogenobacter thermophilus TK-6] gi|288787467|dbj|BAI69214.1| alanine racemase [Hydrogenobacter thermophilus TK-6] gi|308751668|gb|ADO45151.1| alanine racemase [Hydrogenobacter thermophilus TK-6] Length = 338 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 98/361 (27%), Positives = 162/361 (44%), Gaps = 31/361 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEE 67 L+ID A++ N ++ SG R AVVK +AYG+G I P L V F V VEE Sbjct: 6 LEIDADAIRQNIKAIRDFSGK-RVIAVVKADAYGIGAVHICPILEALDEVSSFAVACVEE 64 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G++LR + I +L G+ G+ K + + L PV+S L G+ + ++ Sbjct: 65 GIELRKAGIKKDILILGGVFKGERKALIEYALTPVVSHEAHLRAIE-----GLDIGFHVK 119 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG + + + + +Q+E+F+ ++ Sbjct: 120 YDTGMGRLGFFED-----------VLIKDRRVKGVLTHLSSPLDKDFSLMQIEKFKKIVK 168 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 Y ++ L SS+GI+ + R G+++YG + ++ ++ +ARI+ ++ Sbjct: 169 AYSNVDIHLESSAGIVYMVPFA-THVRIGLAMYGEKPAPDYPIELKRAISIKARILSVKY 227 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 VSY R + V A GYADG LS + G + K + Sbjct: 228 LPPSYPVSYSRTFITDRKKKVGVVAFGYADGLAKALSNV-----------GCLYWKDKPL 276 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 ILG ITMDMTM D+ D +VGD +++ GP +A +GT Y+++ + +R + Sbjct: 277 RILGNITMDMTMVDL-DDTDAQVGDEVEVVGPHQSFSHLAKLAGTIPYEIMCHLSSRIKR 335 Query: 368 F 368 Sbjct: 336 V 336 >gi|261839727|gb|ACX99492.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 52] Length = 377 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSASLRHNFSTVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKICALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG TL Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRTLGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-EAKEGDEVILFGDKSTKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|317178709|dbj|BAJ56497.1| alanine racemase, biosynthetic [Helicobacter pylori F30] Length = 377 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 158/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVNTASLRHNFSTVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNPNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + S N L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|109947823|ref|YP_665051.1| hypothetical protein Hac_1313 [Helicobacter acinonychis str. Sheeba] gi|122973245|sp|Q17WC4|ALR_HELAH RecName: Full=Alanine racemase gi|109715044|emb|CAK00052.1| unnamed protein product [Helicobacter acinonychis str. Sheeba] Length = 377 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 165/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D ++L++N+H+ A+ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVDTSSLRHNFHAAKNAIPKDAHIMAVVKANAYGVGALKASEVFLQEGAHYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYAL 126 ++LR P+ I +L +++ D NL +I S+ Q +S+ H L Sbjct: 68 ALELRSCFPKTPILILGYSPNSNAQMLIDNNLTAMIFSLEQAGVFSQAALKSQKHLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ ++ I +HL+ A+ Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEMIKKIRALNGLEVEGIFTHLSNANANIKTHAKNQMKIFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 + + IE + S N L RPGI LYG Q Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNNNENRFLNLYRPGIMLYGFYPSNEMKQSCQTIL 247 Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 VV+ +A+I+ I++ GE V YG ++LI A+GYADG L Sbjct: 248 NNVVSLKAKIVQIKRVKKGEFVGYGKHFYTNEETLIGTLALGYADGLVRDLGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 + I + P++GK+ MD + D + + GD + +FG +++A+ Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-DGIEAKEGDEVILFGDKSTKANDANEIAM 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|94985480|ref|YP_604844.1| alanine racemase [Deinococcus geothermalis DSM 11300] gi|166967411|sp|Q1IYK9|ALR_DEIGD RecName: Full=Alanine racemase gi|94555761|gb|ABF45675.1| alanine racemase [Deinococcus geothermalis DSM 11300] Length = 355 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 162/371 (43%), Gaps = 25/371 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDF 60 + I +AL++N ++ +G + VK +AYG G E +A V F Sbjct: 3 EMQARAQALISESALRSNLTALARQAG-TQLLLPVKADAYGHGMEIVARLAARHPAVWGF 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V E L I +L + + D + ++S+ + Sbjct: 62 AVAVPREAATLAALGLGKPILLLTPPTLEEMGPLADLGVRLPVASLAEAEALPAHARA-- 119 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+VDTG NRLG +EA+ + L +H A AD+P Q Sbjct: 120 ----HLKVDTGMNRLGARPEEAVRVGQRLAERGLL--EGAYTHFATADEPDLSFARQQFA 173 Query: 181 RFRTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTA 238 RF+ +++ + A A+ G+L P L RPG++ YG + P+ V+T Sbjct: 174 RFQEVLAALPPVLAHAANGGGVLSFGPLPSLSLARPGLASYGFAPAHLRGVAPLTPVMTL 233 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +AR+ + GE VSYGG + TR +++A IGYADGYP +G Sbjct: 234 QARVTHVHAVYPGESVSYGGLWRATRKTIVATVGIGYADGYPRNATG-----------KA 282 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDL 357 ++G P+LG+I MD M D+TD + VGD+++++G I + DVA GT Y++ Sbjct: 283 CVLVRGECRPVLGRICMDQCMVDVTDL-EVRVGDWVEVWGTDKITVTDVAAWGGTVEYEV 341 Query: 358 LVRIGTRYAKF 368 L +G R + Sbjct: 342 LTGLGARVERV 352 >gi|182680013|ref|YP_001834159.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635896|gb|ACB96670.1| alanine racemase [Beijerinckia indica subsp. indica ATCC 9039] Length = 373 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 21/369 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW ++ A+SG AVVK +AYGLG + ALY AG + FFV EG Sbjct: 15 LTIDLAAIVANWQTLQAVSG-TECGAVVKADAYGLGLHPVVKALYEAGCRTFFVAHAFEG 73 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-------SKLMSCGVS 121 ++R P+A I+VL G+ P QE NL PV++SVP++ + K G Sbjct: 74 AEVRALAPEAIIYVLNGVRPAQEYTFAAHNLRPVLNSVPEVEDWGQYCATSHKRAPDGSL 133 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L++DTG N+LGL L + H L ++L++S L ADD + Q+E Sbjct: 134 LKAGLRIDTGVNQLGLKLYDLERVDHL---SPLFDVTLLLSQLVTADD---SIADRQIEA 187 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F + + Y G+ ASLA+S+ I L N + L RPG +LYGG + +PM+ VV +A Sbjct: 188 FDKIRARYPGVPASLANSAAIFLDNNPPLYDLVRPGYALYGGNPVPGRPNPMRPVVRLDA 247 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 II +R G V K + + A G ADG P L+ + +GGK Sbjct: 248 HIIQVRVLEPGHSVGVERLWKARGPRRVIMVAAGLADGIPSGLTDNEKH------VGGKA 301 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 I+G + P + I MD ++ D++D+ +E G+ +++ G + +DD A + + Y++L Sbjct: 302 LIQGTLCPYVSDIAMDYSVIDVSDATYLERGEMVELLGKTVTIDDFAAMANVSGYEILSN 361 Query: 361 IGTRYAKFY 369 +G R + Y Sbjct: 362 LGRRCHRRY 370 >gi|317180214|dbj|BAJ58000.1| alanine racemase, biosynthetic [Helicobacter pylori F32] Length = 377 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|172040070|ref|YP_001799784.1| hypothetical protein cur_0390 [Corynebacterium urealyticum DSM 7109] gi|171851374|emb|CAQ04350.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 488 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 163/406 (40%), Gaps = 53/406 (13%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 E ++L +DL AL NN A+ AVVK + Y G +IA + G V + Sbjct: 81 ELIQLVVDLGALANNTRFFADFVAPAQLMAVVKADGYNHGALRIAQTALDHGAAVVGVAT 140 Query: 65 VEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V E + LR P A IF FD L + S+ Sbjct: 141 VPEALLLRERGPVKDGEPATIFAWMWEPAMDLTPAFDAELTLGVPSLAHARSLIDQARSR 200 Query: 120 VSHPYA---LQVDTGFNRLGLSLQEA---LDFTHNSFNKKLGQLSLIISHLACADDP-SS 172 + P + DTG +R G+S E + + + L + + +HLA AD+ Sbjct: 201 QAKPRPVVGVMSDTGMSRSGISPAEWQETIALLAAAEQEGLIAVDGVFTHLASADEDAQR 260 Query: 173 HVNSVQLERFRTLISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 V Q +RF+ I+ + +A++ L P+ H +L RPG+ +YG Sbjct: 261 AVTDRQHQRFQQAIADCRAAGMAVPRNHIANTPATLTRPDMHHELVRPGLGVYGVDPVAG 320 Query: 228 KS---------------HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272 + P+Q ++ A++I R GE VSYGG D+ AV A Sbjct: 321 GTPTGAAENAVPGLPDVLPLQRTMSMRAKVITTRVVPKGESVSYGGIWTAPEDTRTAVVA 380 Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS----- 327 GYADG P + SG + I G +G+I MD + + + S Sbjct: 381 AGYADGVPRSASG-----------KMQVSINGESYQQVGRICMDQFVVALGPAESAAAEA 429 Query: 328 IEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRI-GTRYAKF 368 ++ GD+ IFG + ++D+A A+GT Y+++ G R + Sbjct: 430 VQPGDWAVIFGDPAAGEPSVEDLAAAAGTIPYEVVTMPRGPRVQRV 475 >gi|304440218|ref|ZP_07400108.1| alanine racemase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371267|gb|EFM24883.1| alanine racemase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 403 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 31/386 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 + + E R L++DL L +N ++ +S N+ AVVK NAYG G +KI L G Sbjct: 16 LKNKELTRSCFLEVDLDKLIDNIRTIKRNISLNSSIIAVVKANAYGFGIKKIVDTLILEG 75 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 + F V +++E +++R Y +I +L K + + I + + K+ Sbjct: 76 IDYFAVATLQEALEIRKYHSDIKIMILGYTDRNLYKKAIENRVELSIYTKDDVLNLEKIA 135 Query: 117 -SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 ++ + ++TG NR+G + + A D +S Sbjct: 136 SEINLTAQINIPLETGMNRIGFVEDDKFIENMETIKNSKNIEVSGAFSHFAAADTNSCYT 195 Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS- 229 Q ++F + + I +++S I+ ++ RPGI +YG ++ + K Sbjct: 196 RKQFDKFIRMTRIIENIGIEIPYKHISNSMAIMNFKEFNLDAVRPGIIMYGSSEGLKKEG 255 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ + + +A+I I+ E VSYG RD+ +A IGYADG LS Sbjct: 256 FDLKYIGSLKAKISNIKTIKKDEKVSYGLTYTCDRDTKVATLPIGYADGVVRILSNKID- 314 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 + G P++G+I MD M D+TD + ++ I G +I +++ Sbjct: 315 ----------VIVNGKRCPVIGRICMDQMMVDVTDV-NCDMDTICTIIGMDGDEEITIEE 363 Query: 346 VALASGTT--NYDLLVRIGTRYAKFY 369 VA +G +Y +R + Y Sbjct: 364 VAGLAGEIATSYS--THFSSRIPRVY 387 >gi|221635562|ref|YP_002523438.1| alanine racemase [Thermomicrobium roseum DSM 5159] gi|221158172|gb|ACM07290.1| alanine racemase [Thermomicrobium roseum DSM 5159] Length = 433 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 100/379 (26%), Positives = 149/379 (39%), Gaps = 29/379 (7%) Query: 9 LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 IDL L N ++ L + AV+K NAYG G A A G + V +EE Sbjct: 42 AIIDLDQLATNARTLVRFLPPDVELLAVLKANAYGHGLVPSALAALAGGARWLGVARIEE 101 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYAL 126 G+ LR A + VL + + + +L + S+ + S G L Sbjct: 102 GLLLRQAGLTAPVIVLGPPNHARLRAAVAADLTLAVGSLADVEAVRSAASALGRPARVHL 161 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +VDTG +R G + EA+ + L I +H A AD P Q+ERFR + Sbjct: 162 EVDTGMHRFGATPDEAVALARGLASDPLLSFEGIYTHFATADAPDCRTLRRQMERFRAVR 221 Query: 187 SH--YKGIEASLASSSGI-------LLGPNYHFQLTRP-GISLYGGTDKINKSHPM--QT 234 +GI + + L P+ + GI YG T P + Sbjct: 222 ERLLAEGIHPPVVHQANSAATLRGALGDPDLPGRRVVRVGILFYGLTPDPALLLPPGIRP 281 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +T +AR+ AGE +SYG + + +GYADG P LS Sbjct: 282 ALTLQARLARCFVVHAGEGISYGHTYVTKALTHCGLVPVGYADGLPRALSNQ-------- 333 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G ++G PILG++ MD T + E+G + + G + D A S Sbjct: 334 ---GWFLVQGQRCPILGRVCMDQTTISLEAVPQAEIGTTVIVLGTGEDGAMTAWDAATLS 390 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT Y++L + TR + Y Sbjct: 391 GTIAYEILTSLATRIPRLY 409 >gi|225156581|ref|ZP_03724914.1| Alanine racemase [Opitutaceae bacterium TAV2] gi|224802813|gb|EEG21062.1| Alanine racemase [Opitutaceae bacterium TAV2] Length = 375 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 160/378 (42%), Gaps = 28/378 (7%) Query: 8 RLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +IDL AL+ N + +L + R AVVK +AYG G + A L +AG F V S+ Sbjct: 4 WAEIDLAALERNLRLIRASLPAHIRYVAVVKADAYGHGLPQTAARLMHAGADLFAVASIA 63 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E LR P + L + P +++ I D N+ +S+ + F + + G Sbjct: 64 EAAALREIGPDWPVLSLGPVLPEEDRHIADYNVAVTVSTTDEVARFSAAARAAGRPIAVH 123 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L++DTG RLG+ ++A N + +L + +H + D+ + + Q RF Sbjct: 124 LKIDTGMGRLGVWHEQAETIYQNLRDAPGLRLEGVFTHFSSPDEDA-AFTAEQRRRFVAA 182 Query: 186 ISHYKGIEA-SLASSSGILLGPNY-----HFQLTRPGISLYGGTDKIN---KSHPMQTVV 236 I +G++ + + G F R G+ +G + V Sbjct: 183 IGRCRGLDPAKIFVHADNSAGLETIETAGPFNAARIGLLQFGVLPHAGSLLAQVRTEPVF 242 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + RI L++ AG +SYG L+RDS +A+ GY DG P S Sbjct: 243 SFRTRIGLVKPLPAGTDISYGRTHTLSRDSRVAILTGGYGDGIPRHASNR---------- 292 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLD----DVALASG 351 ++G P+LG++TMD T+ D+TD G+ + + G + + + Sbjct: 293 -ACVLVRGRRCPVLGRVTMDQTIIDVTDLPADTGPGEEVVLVGRQNGAEIALTEFSRWGD 351 Query: 352 TTNYDLLVRIGTRYAKFY 369 T ++ L + R A+ Y Sbjct: 352 TIPWETLCSVTKRVARIY 369 >gi|89899300|ref|YP_521771.1| alanine racemase [Rhodoferax ferrireducens T118] gi|122480109|sp|Q221R3|ALR_RHOFD RecName: Full=Alanine racemase gi|89344037|gb|ABD68240.1| alanine racemase [Rhodoferax ferrireducens T118] Length = 374 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 151/384 (39%), Gaps = 39/384 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL++N + +A+ A+VK NAYG G E++ L F + Sbjct: 3 RPIQATIHTAALRHNLARARLAAPDAKVWAIVKANAYGHGIERVFEGLRA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R + I +L G+ ++ +L + Q+ + V+ Sbjct: 61 LDEAQRVRALGWRGPILLLEGVFELRDLELCSRLDLWHTVHCDEQIDMLASHK-TKVAQR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + Q +I+H + AD Q+ F Sbjct: 120 VFLKMNSGMNRLGFTPQRYRAAWTRLNALPQVDEISLITHFSDADGARGIT--EQMAVFA 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHF--------QLTRPGISLYGGTDKINK----SHP 231 + G E +L++S+ LL RPGI++YG + Sbjct: 178 EVTRDLPG-ERTLSNSAATLLHTPARQPGDGFVASDWVRPGIAIYGSAPDFPQHSATDWG 236 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +Q +T A+II + G V YG + + V A GYADGYP Sbjct: 237 LQPSMTLTAKIIATQTVDTGASVGYGSTFVADKPIQVGVVACGYADGYPRLC-------- 288 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGPD-----IK 342 G + G +G+++MDM D++ + +G + ++G + Sbjct: 289 ---PTGTPVLVNGIRTRTVGRVSMDMLAVDLSAVTAAGGQVGIGSEVTLWGRAANGLVLG 345 Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366 +D+VA +GT Y+L+ + R Sbjct: 346 IDEVAQPAGTVGYELMCALAPRVP 369 >gi|317177728|dbj|BAJ55517.1| alanine racemase, biosynthetic [Helicobacter pylori F16] Length = 377 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKIPILILGYSPNSNASMLIDNDLSAMIFSLEQAEIFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRTLKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERIY 376 >gi|154507817|ref|ZP_02043459.1| hypothetical protein ACTODO_00299 [Actinomyces odontolyticus ATCC 17982] gi|153797451|gb|EDN79871.1| hypothetical protein ACTODO_00299 [Actinomyces odontolyticus ATCC 17982] Length = 422 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 143/399 (35%), Gaps = 47/399 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+++N + A + A A VK NAYG G +A A + G V + E Sbjct: 19 VDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAALDGGADWLGVAQLAEAFT 78 Query: 71 LRL-------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 LR A I + ++ +S + G Sbjct: 79 LRRGLDEAAVARADAPILAWISTSSSDFAAAIEADIDLSVSWTWVLADICAAAREAGRPA 138 Query: 123 PYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPS---SHVNS 176 +++DTG +R G +L + + + L + SH++ ADDPS + + Sbjct: 139 RVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAWSHMSRADDPSEAGNASTA 198 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227 + F + + L+++SGIL H+ + R GI LYG + Sbjct: 199 SHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMVRAGIGLYGLSPDPAVATS 258 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + + + A + ++ G SYGG I + +GY DG S Sbjct: 259 EQLGLTPALELSAPLTSVKVIEEGTPASYGGTWVAPTRRWIGLVPLGYGDGILRAASNQA 318 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-------------SIEVGDYI 334 + F P++G++ MD M D+ + GD Sbjct: 319 RVVVHTAFGPFN-------APLIGRVCMDQFMVDLGPAEGSPGTPTARSGQAPAIPGDIA 371 Query: 335 QIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369 +FG I DD A A+ T NY+++ +G + Y Sbjct: 372 TLFGSGISGEALADDWAQAADTINYEIVTHLGAHIPRIY 410 >gi|315586885|gb|ADU41266.1| alanine racemase [Helicobacter pylori 35A] Length = 377 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 160/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + IE + S N L RPGI LYG T++ Sbjct: 188 LEQLLEQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSSGMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|307637632|gb|ADN80082.1| Alanine racemase [Helicobacter pylori 908] gi|325996226|gb|ADZ51631.1| Alanine racemase [Helicobacter pylori 2018] gi|325997820|gb|ADZ50028.1| Alanine racemase [Helicobacter pylori 2017] Length = 377 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 167/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N++++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNTASLRHNFNAVKSIVPKDACVMAVVKANAYGAGALKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYNPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPTFKSIEIVKKIRALKGLEVEGIFTHLSNADANIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG QT++ Sbjct: 188 LEQLLNQKIEFKYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +ARI+ I++ GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKL-NGIEAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|322832740|ref|YP_004212767.1| alanine racemase [Rahnella sp. Y9602] gi|321167941|gb|ADW73640.1| alanine racemase [Rahnella sp. Y9602] Length = 357 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 154/366 (42%), Gaps = 20/366 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + +AL N + + + N++ VVK N YG G +I +L F + Sbjct: 3 RPISATLSQSALTQNLNIIRGFAPNSKVWTVVKANGYGHGISRIWRSLSA--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E + LR Q I +L G ++ I D + S + Sbjct: 61 FNEAILLRESGWQGPILLLEGFFTAEDLAIVDKYRLTTAVHSEWQIKALAQASISLPVSI 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+V++G NRLG + + A K ++SH A AD Q+ Sbjct: 121 YLKVNSGMNRLGFAPERAGAVWQQLRELKQVGEITLMSHFATADSVEG--VDAQMSVINL 178 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEA 240 + +G LA+S+ L P+ H RPGI +YG + +Q V+T ++ Sbjct: 179 AGQNIRG-PRCLANSAATLWHPHTHHDWIRPGIIIYGASPSGEWKDIAHTGLQPVMTLKS 237 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I +++ AG V YGG+ +TR I V A GYADGYP G Sbjct: 238 ELIAVQELNAGARVGYGGRYSVTRPQRIGVVACGYADGYPRHA-----------PSGTPV 286 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 ++ G G ++MDM D+T ++G ++++G ++ +DDVA A+GT Y+LL Sbjct: 287 WVDGVRTTTTGTVSMDMLAVDLTPCPQAQMGAPVELWGNNLPVDDVATAAGTLGYELLSA 346 Query: 361 IGTRYA 366 + R Sbjct: 347 LAPRVP 352 >gi|169334855|ref|ZP_02862048.1| hypothetical protein ANASTE_01261 [Anaerofustis stercorihominis DSM 17244] gi|169257593|gb|EDS71559.1| hypothetical protein ANASTE_01261 [Anaerofustis stercorihominis DSM 17244] Length = 374 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 30/362 (8%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 L +K NAYG G + A AL + F V + EG++LR + I +L Sbjct: 25 RVLPKGCELMPAIKANAYGHGLVETAEALNKMEIYHFCVAEISEGIRLRKAGVKGEILIL 84 Query: 84 YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL 143 H ++ +L +V + S L C ++ +++DTG +RLG + Sbjct: 85 GYTHLSNINLVKKYDLTQ---TVIDYRYASSLDECKLNIKVHIKIDTGMHRLGEHFENIT 141 Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSS---HVNSVQLERFRTLI-----SHYKGIEAS 195 + + K + + SHL +D +Q+ F ++ + Y ++ Sbjct: 142 NII-RILSFKNIDVKGVFSHLCVSDSIDKKDIEFTKLQINHFNNIVKVLKENGYTNLKFH 200 Query: 196 LASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARIILIRKALAG 251 + S G+L P+ + R GI+LYG +DKI ++ V++ +AR+ ++R+ + Sbjct: 201 IQGSYGVLNYPDLKYDYARVGIALYGVLSKKSDKIKLDLDLKPVLSLKARVEVVRELMKN 260 Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311 E V YG K + IAV +IGYADG LS G I G VPI+ Sbjct: 261 ETVGYGLDFKAEKKCKIAVVSIGYADGISRKLSNN----------NGFVLINGIKVPIIA 310 Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAK 367 +I MD D++ ++ D + G +I +D+A T ++L R+G R + Sbjct: 311 RICMDQLFIDVSKVDDVKRDDEVVFIGQSGNEEISAEDMANNLDTITNEILSRLGERLKR 370 Query: 368 FY 369 Y Sbjct: 371 IY 372 >gi|149926132|ref|ZP_01914394.1| alanine racemase [Limnobacter sp. MED105] gi|149824950|gb|EDM84162.1| alanine racemase [Limnobacter sp. MED105] Length = 365 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 160/374 (42%), Gaps = 27/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R + A+ N + + L GN VVK N YG G E+I L+ + Sbjct: 3 RPIRAVVKPAAISANINRIKELLGNVVMMPVVKANGYGHGLERIIDGLWQ--ADALAILE 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E +LR I +L G + V+ + QL + + +H Sbjct: 61 IEGAARLRCMGWNKPIVLLEGCFDQTDLLKAMELRCDWVVHNQNQLNDLAAIAQWQPAHK 120 Query: 124 YALQV--DTGFNRLGLSLQEALDFTHN---SFNKKLGQLSLIISHLACADDPSS----HV 174 + + +TG NRLG +A K ++++H A AD+ Sbjct: 121 PQIFLKLNTGMNRLGFQPAQAQAAIQWLDEFTLKHQWPTPVLMTHFANADEAEPRARLPF 180 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPM 232 Q + L + +SLA+S+G L P + RPGI++YG T N ++ + Sbjct: 181 AQRQHQILMDLKPDHW--RSSLANSAGSLNFPMLAGDIARPGIAIYGATPGPNAAANYGL 238 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + + II I++ G+ V YG + + + IAV A GYADGYP Sbjct: 239 KAAMIFSSEIIAIQEVKQGDRVGYGSRWEASDSGRIAVVACGYADGYPRHA--------- 289 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 G +++G++ P+ G+++MDM D++ + +VG ++++G I +D VA GT Sbjct: 290 --PDGTPTYVEGHVAPVAGRVSMDMMTIDVSHIPNAKVGSTVELWGEHIPVDVVADRCGT 347 Query: 353 TNYDLLVRIGTRYA 366 Y+LL I R Sbjct: 348 IGYELLCAIAPRVP 361 >gi|317182240|dbj|BAJ60024.1| alanine racemase, biosynthetic [Helicobacter pylori F57] Length = 377 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 157/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ ++L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSSSLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + S N L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEAILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|46446265|ref|YP_007630.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Candidatus Protochlamydia amoebophila UWE25] gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila UWE25] Length = 841 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 26/374 (6%) Query: 11 IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I+L A+KNN + ++ R ++K AYG ++ L GV V+ VEEGV Sbjct: 470 INLAAIKNNLDMIRTKITPETRLMIIIKAFAYGTDDIQLGKFLSAYGVDILGVSYVEEGV 529 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 L+ IF + K++ + V + L ++ Sbjct: 530 ALKRAGITLPIFTINAAQYEIAKVVKWELEVGVSDVNFISALAQEAKKSSKCIKVHLHIN 589 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLISH 188 TG R G +EAL+ + L I++H ACADDP Q++ F ++I Sbjct: 590 TGMGRFGCRPEEALNLALLITSSSHLILEGIMTHFACADDPRHDSFTQEQIQCFDSVIEQ 649 Query: 189 -----YKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241 + A+SSG + + + R G++ YG G+D + ++ ++ ++ +R Sbjct: 650 LKRHCIQAKWTHAANSSGTIRFSLPQYNMVRIGLATYGLYGSDAVKQALDLRLALSLTSR 709 Query: 242 IILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I GE +SYG + +++ IAV +GY DG SG Sbjct: 710 IVGINHCRKGETISYGRNYLIEKENQTIAVLPVGYFDGLHRHYSG-----------KAHV 758 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNY 355 I G P++G I MD M DITD +GD + IFG D + +++A+ + + Sbjct: 759 LIHGKKAPMVGSICMDYMMVDITDIPHANIGDKVLIFGEDEYGHYLSPEELAMNGNSIVH 818 Query: 356 DLLVRIGTRYAKFY 369 +L+ +G R + + Sbjct: 819 ELITCLGPRIQRIF 832 >gi|261838314|gb|ACX98080.1| alanine racemase [Helicobacter pylori 51] Length = 377 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRTLKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|303326566|ref|ZP_07357009.1| alanine racemase [Desulfovibrio sp. 3_1_syn3] gi|302864482|gb|EFL87413.1| alanine racemase [Desulfovibrio sp. 3_1_syn3] Length = 352 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 155/357 (43%), Gaps = 29/357 (8%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG-IHPGQ 90 VVK +AYG G +A AL AG + F V +V EGV LR I L G I Sbjct: 7 IMPVVKSDAYGHGLLPVARALDGAGARRFAVGTVCEGVALREAGLGQTIVPLMGAISRED 66 Query: 91 EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 + +L P+++ + + AL+ +TG NRLG S +E + Sbjct: 67 WQAAAAHDLTPLLTDFEDIEKAAACCPADRPFRVALKCETGMNRLGFSAEELPAALESLR 126 Query: 151 NKKLGQLSLIISHLACADDPSSH-VNSVQLERFRTLIS----HYKGIEASLASSSGILLG 205 L +SHLACAD P Q ERF ++ + + I SL +S+G L Sbjct: 127 RFPRLAPVLALSHLACADMPGETAYTQAQAERFASMCAVLREAFPDIARSLGNSAGALGL 186 Query: 206 PNYHFQLTRPGISLYGGTDKINKSH-----PMQTVVTAEARIILIRKALAGELVSYGGQK 260 P ++ RPG++LYGG + ++ V++ + ++ +R+ AG+ VSYG Sbjct: 187 PESRYEACRPGLALYGGNPFAGTAWETRGTGLEWVMSVSSPVLQVRQLKAGQSVSYGRIF 246 Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320 + +AV A GYA G+ LS I G VP +G++ M M M Sbjct: 247 TAPQAMTVAVVAAGYATGFARALSNRIDL-----------LINGRRVPQVGRVCMSMLMA 295 Query: 321 DITDSLSIEVGDYIQIFG-------PDIKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 D++ + GD I G + ++A GT Y++L +G+ + Y+ Sbjct: 296 DVSSLPDVRTGDTAWILGGPAAPGQRPVSAQEMADELGTIPYEILCLMGSTNPRVYS 352 >gi|297564802|ref|YP_003683774.1| alanine racemase [Meiothermus silvanus DSM 9946] gi|296849251|gb|ADH62266.1| alanine racemase [Meiothermus silvanus DSM 9946] Length = 373 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 160/372 (43%), Gaps = 19/372 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+++L +L +N + + + ++ +VK NAYG G + L G V + Sbjct: 2 RPAWLEVNLDSLAHNVALLRSKAPASQLVGIVKANAYGHGAVWVGRELLRLGAWGLAVAT 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHP 123 V EG +LRL Q R+ ++ +HP Q + +T+LI +S++ + + G Sbjct: 62 VSEGRELRLGGVQGRVLLMGSLHPDQAREALETDLIASLSTLEGAQALDAAARALGKIAE 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+ DTG R+G +EA +++ + SH A A++ +QL FR Sbjct: 122 VHLEFDTGMGRVGFPWEEAQQVKEALEQFSHLKVTGLYSHFADAEENL-EFTYMQLANFR 180 Query: 184 TLISHY-KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + G LA+S+G+ + F RPGI+LYG + ++ + A+ Sbjct: 181 RVREVWGPGYFCHLANSAGVFNFRDDSFDAIRPGIALYGLLP----NLGLKPIARLLAKP 236 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 L+++ G + Y G IA +GYADG P + + I Sbjct: 237 TLVKQLPPGRKIGYSGLYTTQDHEWIATLPVGYADGMPRLVYNRATVRLLQPSPEEGRLI 296 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYI-QI----FGPDIKLDDVALASGTTNYDL 357 P++G+I+MD I + + D + ++ F P L A +GT +Y+ Sbjct: 297 ----CPVVGRISMDQITVRIPGPVDL---DTVFEVVTADFDPGSSLWGWAEMTGTVSYEP 349 Query: 358 LVRIGTRYAKFY 369 VR+ R + Y Sbjct: 350 AVRLAARLPRVY 361 >gi|326562891|gb|EGE13178.1| alanine racemase [Moraxella catarrhalis 46P47B1] gi|326563668|gb|EGE13920.1| alanine racemase [Moraxella catarrhalis 103P14B1] gi|326573276|gb|EGE23244.1| alanine racemase [Moraxella catarrhalis 101P30B1] Length = 383 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 168/387 (43%), Gaps = 37/387 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M++ + I AL +N + L + A+VK +AYG G + PAL + Sbjct: 1 MNTMRSTSITIHPNALTHNLQIIKSQLDRTTKVLAMVKADAYGHGIDATVPALIH--ADG 58 Query: 60 FFVTSVEEGVKLRL-----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-- 112 F V + E + ++ + + + + K+ D + +I QL + Sbjct: 59 FGVACLSEAMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALS 118 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 + H L+ +TG +RLG + + + + ++ SH ACADD S Sbjct: 119 HRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADAG--YRLILTSHFACADDKSH 176 Query: 173 HVNSVQLERFRTLISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 +N+ Q+ +F ++ + L +S+GI + H R GI+LYG + Sbjct: 177 PLNAQQISKFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQ 236 Query: 228 --KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K+ + +T A+++ I AG+ + Y + IAV +IGY DGYP Sbjct: 237 SAKALNLMPAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPR---- 292 Query: 286 LDSEHSPSVFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 V +G K + ++ I+G++ MDM M DI D L I + + ++G Sbjct: 293 --------VVMGAKVSVTDTSGNRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDS 343 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAK 367 +D+VA+ +GT Y+L+ R+ TR + Sbjct: 344 PTIDEVAMCAGTIGYELMCRLTTRPKR 370 >gi|304413460|ref|ZP_07394933.1| alanine racemase [Candidatus Regiella insecticola LSR1] gi|304284303|gb|EFL92696.1| alanine racemase [Candidatus Regiella insecticola LSR1] Length = 378 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 156/383 (40%), Gaps = 36/383 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + L+AL +N ++ N++ +VVK NAYG G ++ L F + Sbjct: 3 RPISATVHLSALHHNLVAVRDRVSYANSKIWSVVKANAYGHGLARVWRCLEK--TDGFAL 60 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + + V LR Q I +L G ++ + D + + + Sbjct: 61 LDLNDAVLLREQGWQKPILLLEGFFKTEDLALIDHYNLTTVVHSDWQLAALENAKLKKPV 120 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ ++G NRLG +EA + + + ++SH A A + N + + Sbjct: 121 EVYLKFNSGMNRLGFPCEEAHEIWQRAKQIANIKHLTLMSHFANAAHNGNIDNEYRFIQ- 179 Query: 183 RTLISHYKGIEASLASSSGILLGP---------------NYHFQLTRPGISLYGGTDKIN 227 +SLA+S+ IL P ++ RPGI LYG + Sbjct: 180 -QNCQSIPADCSSLANSAVILWHPSVYTSPINNLSNNNLSHFCHWVRPGIMLYGASPNGQ 238 Query: 228 ----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 K ++ ++ + ++ ++ AG+ V YG + I + A GYADGYP Sbjct: 239 VQAIKDLGLRPAMSLHSELLAVQTLKAGDTVGYGSHYRANEAQRIGIVACGYADGYPRNA 298 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343 G ++G + LG ++MDM D+ +VG ++++G + + Sbjct: 299 -----------PTGTPILVEGVLTKTLGAVSMDMLAVDLKPCPHAQVGSIVELWGNHLPI 347 Query: 344 DDVALASGTTNYDLLVRIGTRYA 366 DDVA+A+GT +Y+L+ + R Sbjct: 348 DDVAMAAGTISYELMCALSARVP 370 >gi|126642221|ref|YP_001085205.1| alanine racemase 1 [Acinetobacter baumannii ATCC 17978] Length = 325 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 155/339 (45%), Gaps = 23/339 (6%) Query: 35 VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94 +VK NAYG G + AL + F V ++EG+++R + + ++ G+ E I Sbjct: 1 MVKANAYGHGVKDCLAALNAS--DAFGVACLQEGLEIRELGFEQPVTLIEGVFSEDEMPI 58 Query: 95 -FDTNLIPVISSVPQLTFYSKLMSCGVS--HPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + VI Q + K ++ +++++G NRLG E ++ + Sbjct: 59 AIEQKFECVIHHQQQFEWLIKHKQAYITQGLKVWVKLNSGMNRLGFKNPEIIEVIKTLKS 118 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211 + + + A D +N Q ++F + I AS +S+ I P +F Sbjct: 119 EGFTCVLAMHFANADVD---HPLNEQQKQQFLHVKETCDPILASCCNSAAIFKWPELNFD 175 Query: 212 LTRPGISLYGGTDKINK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268 RPGI LYG + +K ++ V+T A II + AGE V YG + I Sbjct: 176 YVRPGIMLYGASPFADKTVHDLDLKPVMTFTAEIIALNHIEAGEHVGYGSTFCAQQAMDI 235 Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328 A+ +IGY DGYP I + P++G+++MDM D+T++ + Sbjct: 236 AIVSIGYGDGYPRAY-----------VKQNFVAIDSKLCPVVGRVSMDMIAIDVTNT-QV 283 Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 ++G ++++G +DDVA A+GT Y+LL R+ +R + Sbjct: 284 KLGTQVELWGNHRLVDDVAEANGTIGYELLCRLSSRPVR 322 >gi|262201658|ref|YP_003272866.1| alanine racemase [Gordonia bronchialis DSM 43247] gi|262085005|gb|ACY20973.1| alanine racemase [Gordonia bronchialis DSM 43247] Length = 381 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 104/383 (27%), Positives = 161/383 (42%), Gaps = 27/383 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M S +DL A+ +N + + AVVK +AYG G +A A AG + Sbjct: 1 MTSAALT-ATVDLDAIAHNISVLRE-TSRTDVLAVVKADAYGHGAVPVARAALAAGAAEL 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119 V + EG+ LR A I + +L +SS Q + S G Sbjct: 59 GVAVIGEGLALRAAGIDAHITTWLHTNSADFAAAIAADLDLALSSRRQLAAVVAAARSAG 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNS 176 + ++++DTG R G++ E DF + + + HLA D+P +NS Sbjct: 119 TTATASVKLDTGLGRSGVAPDEWADFADDLAKAVAEGAVQVRALMCHLARGDEPDHPLNS 178 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q R + + +A+S L P+ L RPGI++YGG + Sbjct: 179 QQAARLDDARADLVRVGAAPEIMHIANSPAALTRPDLARDLVRPGIAIYGGAPIPGRDFG 238 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + +T A++ L+++ AG+ VSYG RD+ IAV GYADG P SG Sbjct: 239 LIPAMTLRAQVALVKRIAAGQGVSYGHTWVADRDTTIAVIPAGYADGVPRPASGRLRIR- 297 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGP----DIKLDDV 346 I +V +G+I MD + D+ I GD+ ++FG + D Sbjct: 298 ----------IGDRVVDQVGRICMDQFVIDLGPEAGGIAEGDWAELFGTGADGGQRAQDW 347 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A A GT +Y+++ IG R + Y Sbjct: 348 ADAVGTIDYEIVSGIGARAVREY 370 >gi|210135131|ref|YP_002301570.1| alanine racemase [Helicobacter pylori P12] gi|226711046|sp|B6JMG2|ALR_HELP2 RecName: Full=Alanine racemase gi|210133099|gb|ACJ08090.1| alanine racemase [Helicobacter pylori P12] Length = 377 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + IE + S N L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|148652591|ref|YP_001279684.1| alanine racemase [Psychrobacter sp. PRwf-1] gi|172048511|sp|A5WDJ3|ALR_PSYWF RecName: Full=Alanine racemase gi|148571675|gb|ABQ93734.1| alanine racemase [Psychrobacter sp. PRwf-1] Length = 374 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 157/380 (41%), Gaps = 28/380 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S + +D AL +N + ++ + + A+VK +AYG G PAL + Sbjct: 1 MRSAS---IILDSKALTHNLNCVIDTVPDTTKVLAMVKADAYGHGIAHCLPALKD--ADG 55 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII---FDTNLIPVISSVPQLTFYSKLM 116 V E +R + ++ G+ E I Q Sbjct: 56 LGVACFTEAQHIRELGWDKILVLIEGVFSETEWQQSIEAQCQSIIHHQDQVQWALNHLPP 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 L+++TG NRLG E D + + ++ SH A AD P+ N+ Sbjct: 116 ENSPCRTVWLKLNTGMNRLGFESDELGDVAQSLVDAG--YELILTSHFANADAPNHPSNA 173 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q++ F + I+ASL +S+GIL HF RPGI LYG + S Sbjct: 174 KQIDTFTQALQQLREQVDPSIKASLCNSAGILNFKACHFDWVRPGIMLYGSSPVEGVSAQ 233 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 ++ V++ +A ++ I AG V YG + R + + +IGY DGYP + G Sbjct: 234 MLKLKPVMSFKASLMAIHNIAAGTSVGYGSRFVANRPIVKGIVSIGYGDGYPRVVDGSAW 293 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLD 344 Y P++G++ MDM D+TD + +VG + ++G +D Sbjct: 294 VSVQLAGEHSS-----YKCPVIGRVAMDMIAIDLTDVPNPKVGSQVMLWGDPELGAPSVD 348 Query: 345 DVALASGTTNYDLLVRIGTR 364 ++A ++ T Y+LL R+ R Sbjct: 349 EIAESAHTLGYELLCRVTQR 368 >gi|297380139|gb|ADI35026.1| alanine racemase [Helicobacter pylori v225d] Length = 377 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 158/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR Y + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSYFSKTPILILGYSPNANASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + S N L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|218961188|ref|YP_001740963.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas acidaminovorans] gi|167729845|emb|CAO80757.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas acidaminovorans] Length = 629 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 163/372 (43%), Gaps = 19/372 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E ++IDL+A + N + + + L + +VK +AYG G +I+ G V Sbjct: 8 ERSWVEIDLSAFRTNLNILKSFLEPQQQFMMIVKADAYGHGAREISKIACEEGAVYLGVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 + EEG LRL QA + +L + I D +L +SS+ +K Sbjct: 68 NPEEGRLLRLQGCQAPVLILSPCLKNEINTILDNDLAVNVSSLDFARALNKTAKTKNKQA 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG +R G+ E +DF + + + +H A A++ + Q ERF Sbjct: 128 VVHLKVDTGMHRSGILDSEFIDFFNKIAKMDNLLIEGVFTHFASAENDP-EFSKQQEERF 186 Query: 183 RTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 +I + L +S+ ++ G H L R GI YG NK +Q V+T + Sbjct: 187 WNIIDNLPFTPTYLHIDNSNALVNGLGKHSNLVRLGIMAYGIQVPGNKDIALQPVMTFKT 246 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I+ GE V Y +D L + IGYADGY LS G Sbjct: 247 ILSQIKHIAKGESVGYNRSWTAKKDCLYGILPIGYADGYDFMLSNC-----------GVV 295 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP---DIKLDDVALASGTTNYDL 357 F+ + ++G+I+MDM D++ +GD + G + + +++ G +Y+L Sbjct: 296 FLDNKICNVIGRISMDMICVDLSPIEHPAIGDVAILLGGSALETRAENLVSKYGGNSYEL 355 Query: 358 LVRIGTRYAKFY 369 L ++G R ++Y Sbjct: 356 LCQVGRRAKRYY 367 >gi|208434844|ref|YP_002266510.1| alanine racemase, biosynthetic [Helicobacter pylori G27] gi|226711047|sp|B5Z7U5|ALR_HELPG RecName: Full=Alanine racemase gi|208432773|gb|ACI27644.1| alanine racemase, biosynthetic [Helicobacter pylori G27] Length = 377 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVDTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFPKTPILILGYSPNTNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSARANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIAYETISTLSKRLERVY 376 >gi|308062256|gb|ADO04144.1| alanine racemase [Helicobacter pylori Cuz20] Length = 377 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 158/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVNTASLRHNFSTVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR Y + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSYFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADSNIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + S N L RPGI LYG T++ Sbjct: 188 LEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAT 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|329945781|ref|ZP_08293468.1| alanine racemase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528229|gb|EGF55207.1| alanine racemase [Actinomyces sp. oral taxon 170 str. F0386] Length = 446 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 93/415 (22%), Positives = 156/415 (37%), Gaps = 65/415 (15%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R IDL A+ +N + + AVVK +AYG G IA +AG V + E Sbjct: 32 RAVIDLEAVAHNGRLLAQ-TAGVPWMAVVKADAYGHGLGPIALTALSAGASWLGVAQLAE 90 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF---------------- 111 + LR +A + GQ + L + + Sbjct: 91 ALTLRALLDEAGVARPVEEPSGQAPRVLSWLLPVMDPARAACEDSPLRAALKADLDLSVS 150 Query: 112 --------YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF---NKKLGQLSLI 160 + + + L+VDTG +R G ++ ++ + + Sbjct: 151 TLSQLEALAAAARAQATTARLHLKVDTGMSRGGAMAEDLPALAAALRRAVDEGAVDVVGL 210 Query: 161 ISHLACADDPSSHVNSVQLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRP 215 SHL+ AD+P+S L R+R + LA++ G+L P L R Sbjct: 211 WSHLSRADEPTSGSTEEHLVRYRQAERIVCEAGLTPSIHHLAATGGLLWHPEARMDLVRA 270 Query: 216 GISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271 GI LYG + ++ + E+ ++ +++ G+ VSYGG D + + Sbjct: 271 GIGLYGLSPDPSVTTGAELGLRPAMRLESELVQVKRIDVGQAVSYGGTWSAPTDRWVGLV 330 Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327 +GY+DG P S G I G M I+G++ MD + D+ + Sbjct: 331 PLGYSDGVPRAASST-----------GPVGIGGMMTAIVGRVCMDQVVIDLGPAQDETGS 379 Query: 328 -----IEVGDYIQIFGPD--------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +VGD ++G +D+ A A GT NY+++ R+G R + Y Sbjct: 380 SLPAPAQVGDTTVLWGAPDALGQEAVPTVDEWAQACGTINYEIVTRLGARIPRCY 434 >gi|225873754|ref|YP_002755213.1| alanine racemase [Acidobacterium capsulatum ATCC 51196] gi|225793021|gb|ACO33111.1| alanine racemase [Acidobacterium capsulatum ATCC 51196] Length = 428 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 103/425 (24%), Positives = 169/425 (39%), Gaps = 72/425 (16%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +I L +N+ + L+ + R AAVVK NAYG G AP L AG + VT Sbjct: 12 RPVWAEISRARLLHNFSMLQQLASPDIRLAAVVKANAYGHGATLCAPWLAAAGAEWLGVT 71 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV--- 120 SVEEGV +R RI V+ G+ G+ + + + L PV+ L ++ Sbjct: 72 SVEEGVAVRAVCATQRILVMSGLWQGEAEAVLEHCLTPVVWEPFHLDLLARAARQAKLPP 131 Query: 121 -SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNS 176 + P L++DTG +R G + L+ ++ +++H D+ S V + Sbjct: 132 QALPVHLEIDTGMSRQGAAHGGLLEELLRRLREEPDSPLLIEGVLTHFHSPDELDSPVTA 191 Query: 177 VQLERFRTLISHYKGIEASLASSSG----------------ILLGPNYHFQLTRPGISLY 220 Q+ F T + + A L ++ + RPG++LY Sbjct: 192 AQIAAFATAVDTIAAAGLAPALLHAGNSTSLLTGHGLDALRALAARHHAQLMLRPGLALY 251 Query: 221 GGTDKINKSH---------------------------------PMQTVVTAEARIILIRK 247 G T + S Q V++ ++RI+ +R Sbjct: 252 GYTPQAGGSVSEREEQSPRLKAEGYGLQPAHSHSLRGGASALEGFQPVLSLKSRIVSLRT 311 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 AG Y G + R + +A+ IGYADG LSG G ++G+ Sbjct: 312 IAAGATAGYNGTFRAARSTRLALLPIGYADGLSRLLSGR-----------GHVLVRGHRA 360 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGT 363 PI G+I+MD T+ D++ +GD + G I +D+A T +++L I Sbjct: 361 PIAGRISMDQTILDVSGIPEAAIGDEAVLLGEQGNDRITAEDLAALCQTIPWEILTSIAA 420 Query: 364 RYAKF 368 R + Sbjct: 421 RVPRV 425 >gi|45655817|ref|YP_003626.1| alanine racemase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|73921668|sp|Q75FF2|ALR_LEPIC RecName: Full=Alanine racemase gi|45602788|gb|AAS72263.1| alanine racemase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 389 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 160/389 (41%), Gaps = 34/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++I +L NN + + L N+ A++K NAYG G E + AG+ Sbjct: 11 MKDTYSSWIEISKRSLSNNLDNFRSILRPNSTLTAILKSNAYGHGIEPMTRLCIEAGISR 70 Query: 60 FFVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V S+EE + +R + I ++ +P + K + ++ S P+ Sbjct: 71 IGVNSIEEALLIRNIDSKIPILIMGEIQNPEKRKNVLSDPNFWIVFSRPETARILSSFLP 130 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++DTG RLG + N + + + D + +Q Sbjct: 131 APKL--HLKIDTGMGRLGSHGETLKQTLSELKNVGITLGGICTHFASTEDVLEHKYSLMQ 188 Query: 179 LERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI------- 226 ++F I Y + +S+ +L PN HF + R GISLYG I Sbjct: 189 TQKFEEAIFLAKSFGYNHLIRHACASASTMLFPNAHFDMVRIGISLYGLWPSIQTRLSLN 248 Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 NK+ + +++ ++RI+ I+ A + YG + + + +A+ +GY +G L Sbjct: 249 LTGNKNFQLNPILSWKSRIVHIQYHPADSYIGYGSTFQTSYPTKVAIVPVGYYEGLDRKL 308 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 S G + G I+G+I M+MTM D+T EVG + I G D Sbjct: 309 S-----------SNGDMLVLGKKARIIGRICMNMTMLDVTHIPGAEVGSIVTIIGQDGEE 357 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKF 368 I DD+A + T NY+++ RI + Sbjct: 358 SITADDLADRTHTINYEVMTRISESIPRI 386 >gi|158523327|gb|ABW70802.1| alanine racemase [Helicobacter pylori] Length = 377 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 160/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQIALKAKKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + IE + S N L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSARANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|332978217|gb|EGK14948.1| alanine racemase [Psychrobacter sp. 1501(2011)] Length = 392 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 167/397 (42%), Gaps = 36/397 (9%) Query: 1 MHSNEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M S + ++ AL +N +NA+ + A+VK +AYG G + P+L Sbjct: 1 MRSAS---ITLNSAALTHNLTQVINAIPEKTKVLAMVKADAYGHGVKYCLPSLQK--ADG 55 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK---IIFDTNLIPVISSVPQLTFYSKLM 116 V E ++R Q + ++ G+ QE I + I + Q Sbjct: 56 LGVACFTEAKQIRDLGWQKVLVLIEGVFSQQEWAESIEAECQSIIHHQNQVQWALQQVPA 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 S L+++TG NRLG +E + + ++ SH A AD P N+ Sbjct: 116 SNSPCRTIWLKLNTGMNRLGFEPEELVSVAQTLVDAG--YNLILTSHFANADRPEHPSNT 173 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---K 228 Q++ F + I+ASL +S+GI+ P HF RPGI LYG T + Sbjct: 174 NQIKMFTESLQDLREKVDPNIKASLCNSAGIINFPECHFDWVRPGIMLYGSTPLDGISAQ 233 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS---- 284 S ++ V++ A ++ I AG V YG + R + + +IGY DGYP + Sbjct: 234 SLQLKPVMSFSASLMAIHNIAAGAHVGYGSRFVANRPIVKGIVSIGYGDGYPRVVDGSAW 293 Query: 285 ---------GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335 + G ++ Y P++G++ MDM D+T+ + VG + Sbjct: 294 VSVQLAAHENETDIDRSTENDIGSTTVRRYKCPVIGRVAMDMIAIDLTEVPNPTVGCQVT 353 Query: 336 IFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 ++G +DD+A ++ T Y+LL R+ R + Sbjct: 354 LWGDPDEAAPSVDDIANSAHTLGYELLCRVTQRPIRI 390 >gi|24217378|ref|NP_714861.1| alanine racemase [Leptospira interrogans serovar Lai str. 56601] gi|73921669|sp|Q8EX97|ALR_LEPIN RecName: Full=Alanine racemase gi|24202458|gb|AAN51876.1|AE011618_3 alanine racemase [Leptospira interrogans serovar Lai str. 56601] Length = 389 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 160/389 (41%), Gaps = 34/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++I +L NN + + L N+ A++K NAYG G E + AG+ Sbjct: 11 MKDTYSSWIEISKRSLSNNLDNFRSILRPNSTLTAILKSNAYGHGIEPMTRLCIEAGISR 70 Query: 60 FFVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V S+EE + +R + I ++ +P + K + ++ S P+ Sbjct: 71 IGVNSIEEALLIRNIDSKIPILIMGEIQNPEKRKDVLSDPNFWIVFSRPETARILSSFLP 130 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++DTG RLG + N + + + D + +Q Sbjct: 131 APKL--HLKIDTGMGRLGSHGETLKQTLSELKNVGITLGGICTHFASTEDVLEHKYSLMQ 188 Query: 179 LERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI------- 226 ++F I Y + +S+ +L PN HF + R GISLYG I Sbjct: 189 TQKFEEAIFLAKSFGYNHLIRHACASASTMLFPNAHFDMVRIGISLYGLWPSIQTRLSLN 248 Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 NK+ + +++ ++RI+ I+ A + YG + + + +A+ +GY +G L Sbjct: 249 LTGNKNFQLNPILSWKSRIVHIQYHPADSYIGYGSTFQTSYPTKVAIVPVGYYEGLDRKL 308 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 S G + G I+G+I M+MTM D+T EVG + I G D Sbjct: 309 S-----------SNGDMLVLGKKARIIGRICMNMTMLDVTHIPGAEVGSIVTIIGQDGEE 357 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKF 368 I DD+A + T NY+++ RI + Sbjct: 358 SITADDLADRTHTINYEVMTRISESIPRI 386 >gi|313885619|ref|ZP_07819369.1| alanine racemase [Eremococcus coleocola ACS-139-V-Col8] gi|312619349|gb|EFR30788.1| alanine racemase [Eremococcus coleocola ACS-139-V-Col8] Length = 395 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 87/401 (21%), Positives = 152/401 (37%), Gaps = 49/401 (12%) Query: 4 NEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + ++L+A++ N L AVVK NAYGLG E++A AG + V Sbjct: 7 HRPTQAIVNLSAIEANIKWQQAKLEPGQSLIAVVKANAYGLGAEQVARTALKAGAEGLAV 66 Query: 63 TSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL------ 115 +V+EG+ LR Q I VL P I NL +S + + Sbjct: 67 ATVDEGISLRKAGIIQVPILVLGLTDPQGIAEILHYNLTVTVSDLDFFDQAYQQLLTTDD 126 Query: 116 --MSCGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 + + P+ L +DTG R+GL + E DF + +H + Sbjct: 127 LYLLDNLKLPFHLALDTGMTRIGLRTETEVSDFVTKIQAYDWVDFQGVFTHFSTIGGGPQ 186 Query: 173 HVNSVQLERFRTLIS---HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK---- 225 Q +R+ L + I S+ G+ R G+++YG Sbjct: 187 DYVEYQWQRWLDLTALIPESVKIRHYANSAMGLWQDRQPASTWVRYGVAMYGLDPMDRIP 246 Query: 226 -------------INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272 +N+ P+Q + + I+ +++ G +SYG + + IA Sbjct: 247 SHFKEQVDTSQLGLNEEDPLQPALELISEIVYVKEIPQGTKISYGATYQSSEKEWIATIP 306 Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332 IGYADG+ + + ++G+ P++G+I MD M + G Sbjct: 307 IGYADGWLRSYQVI------------PVLVEGHACPVVGRINMDQLMIRLPHYYP--KGT 352 Query: 333 YIQIFGPDIKLDD----VALASGTTNYDLLVRIGTRYAKFY 369 + + GPD + +A + T Y+++ + R + Y Sbjct: 353 PVTLIGPDHGAYNHISWIAQQTSTIGYEIMTNLSDRIPRIY 393 >gi|227497232|ref|ZP_03927472.1| alanine racemase [Actinomyces urogenitalis DSM 15434] gi|226833280|gb|EEH65663.1| alanine racemase [Actinomyces urogenitalis DSM 15434] Length = 441 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 95/413 (23%), Positives = 163/413 (39%), Gaps = 67/413 (16%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL AL +N + + +G A AVVK +AYG G E +A +AG V ++E + Sbjct: 38 IDLEALAHNARVLASKAGRAW-MAVVKADAYGHGIEAVARTCLDAGASWLGVAQLDEALH 96 Query: 71 LR----------------LYTPQARIFVLYGIH----------PGQEKIIFDTNLIPVIS 104 LR + QA + + + +L +S Sbjct: 97 LRGLLDAAGVARPRSADEPASSQAPRLLCWLVPVLSPQQAAREGSPLWEALAGDLDLSVS 156 Query: 105 SVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--- 160 ++ QL GV ++VDTG +R G L++ + + + Sbjct: 157 TLTQLQAVRVAARAQGVVARIHVKVDTGMSRAGAVLEDLPALAREARAAQDAGEVDVVGL 216 Query: 161 ISHLACADDPSSHVNSVQLERFR--TLISHYKGIEA---SLASSSGILLGPNYHFQLTRP 215 SHL+ AD+P S L RFR I + G+ L+++ G+ P+ L R Sbjct: 217 WSHLSRADEPDSGSTEDHLARFRRGEQILNQAGLHPGVRHLSATGGLEWHPHARLDLVRI 276 Query: 216 GISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271 GI LYG + + + ++ V+ +A ++ +++ AG+ VSYGG D + + Sbjct: 277 GIGLYGFSPEPAVATSQELGLRPVMRLQAPLVQVKRIPAGQAVSYGGTWSAPTDRWVGLV 336 Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE-- 329 +GY DG P + G ++ G ++GK+ MD + D+ + Sbjct: 337 PLGYGDGIPRAAAST-----------GPVWVAGRRTTVVGKVCMDQVVIDLGPATDAAGS 385 Query: 330 -------VGDYIQIFGPD-------IKLDDVALASGTTNYDLLVRIGTRYAKF 368 GD ++G +D A T +Y++L R+G R + Sbjct: 386 PLPAPAAAGDRAIVWGDPDRDGEGVPTAEDWARVCSTISYEILTRLGPRVPRV 438 >gi|167757231|ref|ZP_02429358.1| hypothetical protein CLORAM_02781 [Clostridium ramosum DSM 1402] gi|167703406|gb|EDS17985.1| hypothetical protein CLORAM_02781 [Clostridium ramosum DSM 1402] Length = 341 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 150/352 (42%), Gaps = 29/352 (8%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 VVK YG G ++A G++ F V +++EG+KLR + I VL HP Sbjct: 1 MVVVKAEGYGHGLVEVAKHCQKMGIEAFAVATIDEGIKLREHGIYGEILVLGYSHP---I 57 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 + + +I ++ +L G +++DTG +RLG L + + Sbjct: 58 RAIELHNYRLIQTIVNREHARQLNESGHMINVHIKIDTGMHRLGFDLSDYESIKEIYDYQ 117 Query: 153 KLGQLSLIISHLACADDP--SSHVNSVQLERF-----RTLISHYKGIEASLASSSGILLG 205 + C Q+ F + HY + L SS G++ Sbjct: 118 FIHIQGYFTHLCVCDSKRKVDQEYTQKQIAAFYDLINELKLRHYDIGKVHLQSSYGLVNY 177 Query: 206 PNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261 P + R GI +YG N ++ +T +A+I ++ G + YG K Sbjct: 178 PEINADYARVGILMYGVYSTFNDYSKVQLDLKPALTIKAQIAMLHYLTKGASLGYGLTYK 237 Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 + RDS+IAV IGY DG P LS G IKG PI+G+I MD + D Sbjct: 238 VNRDSVIAVIPIGYGDGLPRILS-----------SNGSVLIKGQKCPIVGRICMDQMLVD 286 Query: 322 ITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++ I D + + G +I+++++AL + T + ++L R+G+R + Y Sbjct: 287 VSEISDISDNDLVTVIGQDGTEEIRVEEIALEANTISNEILSRLGSRLPRIY 338 >gi|296135085|ref|YP_003642327.1| alanine racemase [Thiomonas intermedia K12] gi|295795207|gb|ADG29997.1| alanine racemase [Thiomonas intermedia K12] Length = 367 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 32/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL +N + + ++ AVVK NAYG G + AL F + Sbjct: 3 RPISAVIHTAALSHNLLRVRQATPASKVWAVVKANAYGHGIARAYSALRT--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E KLR I +L G P + NL V+ Q+ + + +H Sbjct: 61 LAEAEKLRALGWVGPILLLEGCFAPEDLALCERLNLWHVVHCREQIDWLAVHRG-NRTHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NR+G S + ++H ACAD+ S L RF Sbjct: 120 VFLKMNTGMNRVGFSPEAYAAAWERLNALPQVGEITHMTHFACADEASG--IDEALARFA 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDK----INKSHPMQTVVT 237 + H G S++ ++ G + RPGI+LYG + ++ ++ Sbjct: 178 RGVGHLPGERTLANSAAVLVHGADPRVATDWVRPGIALYGSSPTGLALDAAHWKLRPAMS 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I I+ AGE V YG + R I V A GYADGYP G Sbjct: 238 LRSELIDIQHIAAGECVGYGARFTAPRPMRIGVVACGYADGYPRVAPN-----------G 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPD----IKLDDVALA 349 + G ++G+++MDM D+ + +G + ++G D + +D+VA A Sbjct: 287 TPIVVDGVRTQLVGRVSMDMITVDLEPVFAAGNRPMIGSPVLLWGQDAQAELSIDEVAAA 346 Query: 350 SGTTNYDLLVRIGTRYA-KF 368 +GT Y+L+ + R + Sbjct: 347 AGTLGYELMCALAQRVPVRV 366 >gi|251799573|ref|YP_003014304.1| alanine racemase [Paenibacillus sp. JDR-2] gi|247547199|gb|ACT04218.1| alanine racemase [Paenibacillus sp. JDR-2] Length = 389 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +I L+ ++ N ++ + + AVVK N YG G + A A AG V + Sbjct: 5 TWAEISLSRIRENMLNIRRSLPVSVKLMAVVKANGYGHGDIESAKAAMRAGADYLAVAYL 64 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPY 124 EE ++LR + I VL I P ++ +L ++S + C Sbjct: 65 EEAIRLRDAGLKLPILVLTPIRPELVQLALRHDLSLTVTSAKWFSEMRIFKPCPAGKLRV 124 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG R+G+ +E D + + +H A A + Q RF Sbjct: 125 HVKMDTGLGRIGIRTKEEWDELVPWLQAEDVDVDGFYTHFATAGQEDTGFLEQQTARFLD 184 Query: 185 LISHYK----GIEASLASSS-GILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTA 238 + + I + S L P+ + R G ++YG K+ ++ ++ Sbjct: 185 MKEWTRASGLAIRHYHCAGSVAALRFPHLAMDMVRIGAAMYGFYPAKLACPVKLEPALSL 244 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +R+I ++K + GE + Y + + I IGYADG+ + G D Sbjct: 245 HSRLIQVKKLVKGEYIGYDNSYRAEEEEWIGTVPIGYADGWAQRMQGTD----------- 293 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 I G+ PI GKI MD M + G + + G I ++A+ G+ Sbjct: 294 -VLIGGHRTPIAGKICMDQLMIKLPG--PCAEGTPVTLIGTQGGQRITFAELAVHIGSVA 350 Query: 355 YDLLVRIGTRYAKFY 369 ++ +G R + Y Sbjct: 351 QEVSTSLGGRITRTY 365 >gi|83952042|ref|ZP_00960774.1| alanine racemase [Roseovarius nubinhibens ISM] gi|83837048|gb|EAP76345.1| alanine racemase [Roseovarius nubinhibens ISM] Length = 345 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 184/364 (50%), Gaps = 26/364 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A NW +++A + + TAAVVK +AYGLG +K+A AL AG + FFV E Sbjct: 4 ATLTIDLNAAVANWRALDAKT-DCETAAVVKADAYGLGADKLARALARAGARSFFVAVAE 62 Query: 67 EGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EG LR P I V G PG +I D L P+I+S+ Q+ + + H + Sbjct: 63 EGAALRQALGPGPNICVFSGHMPGDADMIGDLELTPMINSLDQM---IRHVEALPGHAFG 119 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 LQ+DTG NRLG+ E + + LI+SHLACAD+P +N+ QL FR + Sbjct: 120 LQLDTGMNRLGMEPSEWAAVRDVALAQ---NPVLIMSHLACADEPDHPMNAQQLRTFREM 176 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + SLA++ G+LLG +YHF L RPGI YGG H V T + +I Sbjct: 177 TDG-LDVPRSLANTGGVLLGRDYHFDLCRPGIGTYGGAPFAEARH----VATLDIPVIQC 231 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R GE V YG +R + IA + GYADG + + G Sbjct: 232 RDVAPGETVGYGNSYVASRPTRIATISAGYADGILRAMG-----------PKTGLWCDGK 280 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +PI G+I+MD+ D+T +Q+ GP+ +D +A A+GT Y++L +G RY Sbjct: 281 RLPIAGRISMDLIGVDVTALGQDPK--SLQLLGPNQGVDTLADAAGTIGYEILTSLGARY 338 Query: 366 AKFY 369 + Y Sbjct: 339 TRRY 342 >gi|254448149|ref|ZP_05061612.1| alanine racemase [gamma proteobacterium HTCC5015] gi|198262275|gb|EDY86557.1| alanine racemase [gamma proteobacterium HTCC5015] Length = 323 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 91/336 (27%), Positives = 143/336 (42%), Gaps = 17/336 (5%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 N R IDL A+++N + +R A VK +AYG G ++ A V V Sbjct: 2 NRPARATIDLEAIRHNVKVAKRAAPQSRVLAAVKADAYGHGLTRVLSAFEE--VDALAVA 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 SVEE V LR + + + + P + L PV QL + S+ S Sbjct: 60 SVEEAVALRAVSDKDIVVLQGIRQPEHLALCTKHALQPVFHQSQQLDWLSRWSSQDSMLS 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+VD+G +RLG L + ++H+ACADD S QL+ F Sbjct: 120 VWLKVDSGMHRLGFDLDAVERAFVRLSDHAAVNRVACMTHMACADDRSDDYTLQQLKAFE 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEA 240 + + S A+S+ +L P H+ RPGI LYG + I + +Q + A Sbjct: 180 RVTADLSA-PRSAANSACVLGWPQAHYDWVRPGIMLYGASPFIGDTAQDWGLQPAMRLTA 238 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I+ G+ V YG + + V AIGY DGYP + Sbjct: 239 PIVAIKHCRKGDAVGYGRSWVCPKPMTLGVVAIGYGDGYPRHANNQ-----------TPA 287 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 ++KG+ ++G+++MDM D+T + + D + + Sbjct: 288 WVKGHTTHLVGRVSMDMIAIDLTGYTDVSIDDEVVL 323 >gi|149196848|ref|ZP_01873901.1| alanine racemase [Lentisphaera araneosa HTCC2155] gi|149139958|gb|EDM28358.1| alanine racemase [Lentisphaera araneosa HTCC2155] Length = 360 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 23/375 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M L IDL ALK N+H + LS ++ V+K NAYGLG ++IA L +G Sbjct: 1 MAHQHRNTLSIDLRALKENFHKLEKLSSPSQVMPVLKANAYGLGAKEIAAELKESGATII 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E + L I +L I P + + N I I S+ S Sbjct: 61 AVADLNEALD--LRDLDLDILILGDIIPEEIPLAIRNNFILPIGSLESAQLISAHAGERR 118 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +D+G RLG+ +AL+ + + +H A + Q+E Sbjct: 119 -VFCHLVIDSGMGRLGIPAAQALEEFAEIAKLEKLHFDGVYTHFPVAYSDR-EFSLQQIE 176 Query: 181 RFRTLISHYKG--IEASLASSSGILLGPNYH---FQLTRPGISLYGGTD-KINKSHPMQT 234 F+ ++ +A+S GI P F R G++LYG D + + ++ Sbjct: 177 AFKDFLNQCPHTFKRIHIANSDGIHNIPEACQAPFNFVRTGLNLYGCFDLEGAQRVQLEP 236 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++T +R++ +R+ AG + YG + L + +L+ A+GYADG+P Sbjct: 237 ILTLASRLVRVRELNAGMSIGYGREWLLEKTTLVGTVALGYADGFPFN------------ 284 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 +G+ P++G+I+MD D++ + + GD + G I + A GT Sbjct: 285 -TKAYVLYQGHKCPVIGRISMDYITIDLSQCPNAKSGDAVLCLGDAIPVAKWAKWKGTIT 343 Query: 355 YDLLVRIGTRYAKFY 369 Y+++ +G R + Y Sbjct: 344 YEIICSLGQRIKRIY 358 >gi|124268746|ref|YP_001022750.1| alanine racemase [Methylibium petroleiphilum PM1] gi|166969417|sp|A2SLS6|ALR_METPP RecName: Full=Alanine racemase gi|124261521|gb|ABM96515.1| Alanine racemase [Methylibium petroleiphilum PM1] Length = 367 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 141/374 (37%), Gaps = 28/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL +N A +AR AVVK +AYG G ++ AL F + Sbjct: 3 RPIEALIHAEALTHNLARARAAVPDARVWAVVKAHAYGHGIARVFEALRA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E +LR + I +L G+ P ++ NL + Q+ + + H Sbjct: 61 LAEAQQLRDLGWRGPILLLEGVFEPRDLELCSRLNLWHTVHCEAQIDWLAMHK-THQPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++SH + AD ++Q+ F Sbjct: 120 VFLKMNSGMNRLGFRPAAFRAAWTRLHALPQVDEISLMSHFSDADGGRGIAAAMQV--FD 177 Query: 184 TLISHYKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSHPMQTV----VT 237 G + S++ + G + R GI LYG +T Sbjct: 178 DATRDLPGERSLCNSAATLRHGADAAVRADWVRAGIMLYGSAPDFPSHDIAHWDLQPTMT 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 AR+I + AG+ V YG + I V A GYADGYP G Sbjct: 238 LRARLIGTQDLQAGDTVGYGSRFTAEAPMRIGVVACGYADGYPRHA-----------PSG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G ++G+++MDM D+ G + ++G + +D+VA A+GT Sbjct: 287 TPVLVDGVRTRLVGRVSMDMVTVDLGGLPQAARGSEVTLWGRASSGAVLPIDEVAHAAGT 346 Query: 353 TNYDLLVRIGTRYA 366 Y+ + + R Sbjct: 347 VGYEPMCALAARVP 360 >gi|108563349|ref|YP_627665.1| alanine racemase, biosynthetic [Helicobacter pylori HPAG1] gi|123373729|sp|Q1CST1|ALR_HELPH RecName: Full=Alanine racemase gi|107837122|gb|ABF84991.1| alanine racemase, biosynthetic [Helicobacter pylori HPAG1] Length = 377 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSARANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIAYETISTLSKRLERVY 376 >gi|311114795|ref|YP_003986016.1| alanine racemase [Gardnerella vaginalis ATCC 14019] gi|310946289|gb|ADP38993.1| alanine racemase [Gardnerella vaginalis ATCC 14019] Length = 451 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 102/406 (25%), Positives = 165/406 (40%), Gaps = 44/406 (10%) Query: 8 RLKIDLTALKNNWHSM-----NALSGNAR---TAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ +DL AL++N ++ L + VVK +AYG G A A G Sbjct: 25 QVIVDLKALRDNMRTLIERVSKDLQPGQKSPAVMGVVKADAYGHGLIPSALAALAGGATW 84 Query: 60 FFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 E ++LR +R +L + + D + SV L + Sbjct: 85 LGTAQPYEALRLRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALA 144 Query: 119 GVS----HPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171 S ++VDTGF R G + +AL+ ++ L ++ SHLA AD P Sbjct: 145 AKSVGAAARIHVKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWSHLAVADCPD 204 Query: 172 SH----VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGG 222 Q+E+F LA+++ L P F+L RPGI LYG Sbjct: 205 VPEFVSSTDRQIEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 264 Query: 223 TDKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 P +T +A++ ++ AG +SYG ++ A+ +GYADG Sbjct: 265 EPDPVMGVPQTYDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYADG 324 Query: 279 YPLTLSGLDSEHSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDI---TDSLSIEV 330 SG D + S V GG + G + + G++ MD + D+ L ++ Sbjct: 325 ILRAASGYDMQGSRHVNKPGGPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELGVKE 384 Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+GT +Y+++ IG R + Y Sbjct: 385 GDTVRLFGPGRGIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLY 430 >gi|15611943|ref|NP_223594.1| alanine racemase [Helicobacter pylori J99] gi|9789719|sp|Q9ZKQ9|ALR_HELPJ RecName: Full=Alanine racemase gi|4155452|gb|AAD06456.1| ALANINE RACEMASE [Helicobacter pylori J99] Length = 377 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N++++ + +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNTHSLRHNFNAVKNIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + Q I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFSQTPILILGYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADSNIKTHAKNQMKVFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG QT++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +ARI+ I++ GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-EAKEGDEVILFGDKSTKANDASEIAT 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|71907615|ref|YP_285202.1| alanine racemase region [Dechloromonas aromatica RCB] gi|71847236|gb|AAZ46732.1| Alanine racemase region [Dechloromonas aromatica RCB] Length = 370 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 158/367 (43%), Gaps = 24/367 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ +R +I A+ +N+ + ++ AV+K NAYG G + AL F Sbjct: 1 MKTSRPIRARIAPAAILHNYRLAKRHAPQSKAWAVIKANAYGHGQWRAVDALRGE-ADGF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 + E V LR I +L GI + + + L VI + QL + Sbjct: 60 ALLECENAVALREAGVTQPILMLEGIFSARDVRAVIEYRLTSVIHCLEQLELLVRNGRFD 119 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+++TG NRLG + L + +++H A AD + QL Sbjct: 120 TPISVCLKLNTGMNRLGFTAA-TLPRAWEILQQLPQVDVTLMTHFADADGERG--VTWQL 176 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 ERF L + G SL +S+ IL P H RPGI LYG + ++ ++ V+ Sbjct: 177 ERFHDLAGDWAG-PVSLGNSAAILSHPKAHGDWVRPGIMLYGASPFADQSAVDLGLRPVM 235 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E+ +I I+ AGE V YGG R I V A GYADGYP Sbjct: 236 TLESAVIGIQDLAAGERVGYGGTFTADRPMRIGVVACGYADGYPRHA-----------PT 284 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI----KLDDVALASGT 352 G + G +G+++MDM D+TD +G + ++G I D+VA A+GT Sbjct: 285 GTPIAVMGRRTRTIGRVSMDMLACDLTDVPEAGIGSPVTLWGLGIAGAVPADEVAAAAGT 344 Query: 353 TNYDLLV 359 Y+L Sbjct: 345 VAYELFC 351 >gi|308063768|gb|ADO05655.1| alanine racemase [Helicobacter pylori Sat464] Length = 377 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 157/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++L + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELCSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + S N L RPGI LYG T++ Sbjct: 188 LEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|152997631|ref|YP_001342466.1| alanine racemase [Marinomonas sp. MWYL1] gi|189027389|sp|A6W1F2|ALR_MARMS RecName: Full=Alanine racemase gi|150838555|gb|ABR72531.1| alanine racemase [Marinomonas sp. MWYL1] Length = 365 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 163/371 (43%), Gaps = 21/371 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL A+ N+ L + AVVK NAYG G +++ L V F V + Sbjct: 3 RPLTATVDLEAILQNYRYAKKLQPTCKAFAVVKSNAYGHGAVEVSRYLDKE-VDAFAVAA 61 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE + LR + I +L G+ G+E + + + Q S Sbjct: 62 IEEAIALREAGIVSPILLLEGVFEGEEWALCEKHGFWSALENAQQLD-ELQASHAKIEKV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++D+G +RLG+ + A F + ++++H +CADD S QL F Sbjct: 121 FLKLDSGMHRLGVDKETAPVFVSALKDSGQVGEVVLMTHFSCADDLSDLTTMQQLAYFEQ 180 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEAR 241 IEAS+A+S+ I+ RPGI LYG + +S ++ +T ++ Sbjct: 181 ARQSIGEIEASVANSATIMKWSVPEGGWIRPGIMLYGISPFAEVSGRSIGLRPAMTLSSK 240 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I RK G+ V YG D ++A A+GY DGYP G Sbjct: 241 VISTRKLKQGDKVGYGLGYVAAEDHVLATVAVGYGDGYPRHAVN-----------GTPLK 289 Query: 302 IKGYMVPILGKITMDMTMF---DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 I G + G+++MDM D+ D +G + ++G D+ +++VA +GT Y+L+ Sbjct: 290 IDGKPASLAGRVSMDMITVRMQDLADEP--AMGQDVVLWGGDVPVEEVADYAGTIGYELV 347 Query: 359 VRIGTRYAKFY 369 R+ +R Y Sbjct: 348 TRMTSRPHYRY 358 >gi|289548107|ref|YP_003473095.1| alanine racemase [Thermocrinis albus DSM 14484] gi|289181724|gb|ADC88968.1| alanine racemase [Thermocrinis albus DSM 14484] Length = 337 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 31/362 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67 L+I+ AL N +N +G + AVVK NAYG+G IA L V F V VEE Sbjct: 5 LEINRDALLQNVKRINTFTGK-KLIAVVKANAYGVGATLIASLLEPLEEVAAFAVACVEE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 GV+LR + I VL G+ P + + + NL PV+S L G + ++ Sbjct: 64 GVELREAGVKKPILVLGGVLPEELEELVRWNLTPVVSHPSHLKALE-----GSFVKFHVK 118 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG + ++++ + +SH A Q+E FR ++S Sbjct: 119 YDTGMGRLGFLEE-------IIQDRRVEGVMTHLSHPA-----DRSFTLKQIETFRKIVS 166 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 HY+G++ SS L+ + R G++LYG + + ++ +ARII ++ Sbjct: 167 HYRGVKWVHLESSAGLIYRVDYATHVRVGLALYGEKPLSSYPIELSPALSLKARIISVKV 226 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 AG VSYG L RD+ + V AIGYADG +LSG + + +G V Sbjct: 227 LPAGHRVSYGDSCVLKRDTRVGVVAIGYADGLLKSLSG-----------KARFYYRGVPV 275 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P+LG ITMDMTM D++ EVGD+++I GP +A +GT Y+L+ + R + Sbjct: 276 PLLGNITMDMTMVDLSSV-EAEVGDWVEIVGPHQSFTQLAKEAGTIPYELMSLLSRRVHR 334 Query: 368 FY 369 + Sbjct: 335 VF 336 >gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1] gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1] Length = 844 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 156/375 (41%), Gaps = 24/375 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++IDL A+++N ++ +++G AV+K +AYG G + A A G V Sbjct: 479 DRPTWVRIDLDAIRDNVRTLRSIAG-VPVMAVLKADAYGHGAVRAARAALAGGAVALAVA 537 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++ E LR A I L P Q + + + + GV P Sbjct: 538 TLGEARTLREAGIGAPILALGYTPPWQVAQAARLGVAITVFDYDAARACAAVAETGVPVP 597 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++VDTG R GLS+ E F + + + +H A AD QL RFR Sbjct: 598 VHVEVDTGMARTGLSVDELGPFLRSLAGLPGVHVEGLYTHFADADAADPGAAEAQLRRFR 657 Query: 184 TLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVV 236 + + G A+S+ +L P F + RPGI+ YG + P + + Sbjct: 658 SALDAVTGAGLRPPVVHAANSAAMLRLPGARFDMVRPGIACYGLAPSPWVTLPAALRPAL 717 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + +R G VSYGG R S IA +GYADG Sbjct: 718 SFHSEVAQVRDLPPGTPVSYGGTFVTRRHSRIATIPVGYADGMRRAPPWR---------- 767 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + ++G P++G+I MD M D+TD + GD + + G I + +VA GT Sbjct: 768 --EVLVRGRRAPVVGRICMDYAMIDVTDHAEVRRGDLVTLIGVQGDACITVAEVASWLGT 825 Query: 353 TNYDLLVRIGTRYAK 367 +YD++ I R + Sbjct: 826 ISYDVVATILPRVPR 840 >gi|326576906|gb|EGE26812.1| alanine racemase [Moraxella catarrhalis O35E] Length = 380 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 37/379 (9%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + I AL +N + L + A+VK +AYG G + PAL + F V + E Sbjct: 6 ITIHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPALIH--ADGFGVACLSE 63 Query: 68 GVKLRL-----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 + ++ + + + + K+ D + +I QL + + Sbjct: 64 AMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQF 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 H L+ +TG +RLG + + + + ++ SH ACADD S +N+ Q+ Sbjct: 124 CHTIWLKYNTGMSRLGFNDDHIITAAKSLADAG--YRLILTSHFACADDKSHPLNAQQIS 181 Query: 181 RFRTLISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 +F ++ + L +S+GI + H R GI+LYG + K+ + Sbjct: 182 KFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLM 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A+++ I AG+ + Y + IAV +IGY DGYP Sbjct: 242 PAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPR------------ 289 Query: 294 VFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 V +G K + ++ I+G++ MDM M DI D L I + + ++G +D+VA+ Sbjct: 290 VVMGAKVSVTDTSGNRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAM 348 Query: 349 ASGTTNYDLLVRIGTRYAK 367 +GT Y+L+ R+ TR + Sbjct: 349 CAGTIGYELMCRLTTRPKR 367 >gi|300932943|ref|ZP_07148199.1| hypothetical protein CresD4_02686 [Corynebacterium resistens DSM 45100] Length = 559 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 155/387 (40%), Gaps = 35/387 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + IDL+A+++N + +A AVVK +AY G +A A +G V Sbjct: 11 HALAEVIIDLSAVRSNVSLFADAAPSAEVMAVVKADAYNHGAFSVARACLESGATQLGVA 70 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-------FYSKLM 116 ++ E + LR A I I ++ + S+ + Sbjct: 71 TIGEALSLRTAGITAPITAWMWIPGEDLSRAIQQDITIGVPSLAHAEALVELVDTLEQSD 130 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL--ACADDPSSHV 174 S +L DTG +R G++ + + + D + Sbjct: 131 SNSTPIAISLMADTGLSRSGITPDQWATVVELIAKYSASFDVRGVMSHLASADDSARAAF 190 Query: 175 NSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 VQ RF+ I GI+ +A++ L P+ H Q+ RPG+ +YG + S Sbjct: 191 TDVQNRRFQRAIEICREHGIDPRTNHIANTPAALTRPDLHHQMVRPGVGIYGIDPVVGGS 250 Query: 230 HPM----QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + +T A++I + AGE VSYGG TRD+ AV A GYADG P SG Sbjct: 251 GGNAGQLRPAITFRAKVITTKTIRAGESVSYGGTWTATRDTRTAVVAAGYADGVPRAASG 310 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGP-DI 341 I G + P +G++ MD + ++ DS ++ GD+ IFG I Sbjct: 311 KF-----------HVGIGGKLYPQIGRVCMDQIVVNLGDSEEPTDVKPGDWATIFGEGGI 359 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKF 368 ++A A+ T +Y++L R + Sbjct: 360 SASELAAAAETIDYEILTM--PRGPRV 384 >gi|88803788|ref|ZP_01119311.1| alanine racemase [Polaribacter irgensii 23-P] gi|88780316|gb|EAR11498.1| alanine racemase [Polaribacter irgensii 23-P] Length = 366 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 149/376 (39%), Gaps = 23/376 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+++ + L+ID AL +N L + AVVK YG ++A L V Sbjct: 1 MNTHVTI-LEIDGKALVHNLDYFKEKLQTTTKILAVVKAFGYGSDGAQVAKFL-EHKVDY 58 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V EGV LR Q I VL+ ++I D L P + + + K+ Sbjct: 59 FAVAYTHEGVALREAGVQTPILVLHPHL-QNLEVIIDFKLEPGLYNFKIFNAFLKVAKEK 117 Query: 120 VSH--PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 S P L+ +TG NRLG S E ++ + SHLA ++D + Sbjct: 118 GSAQYPIHLKFNTGLNRLGFSATEIPTILTQLHASTAVKVQSLFSHLAASEDLEEKAFTT 177 Query: 177 VQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 Q+E+F + L ++SG++ P F + R GI LYG + ++ Sbjct: 178 GQIEQFTAIKEELFAGLKYTPMLHLLNTSGVVNYPKAQFDMVRIGIGLYGFGNDAKETVH 237 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ ++ I I AGE V Y + A IG+ADG L Sbjct: 238 LKNTHNLKSIISQIHTIAAGETVGYNRAFAAKATTKTATIPIGHADGLSRRLGNT----- 292 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G I PI+G + MDM M D+T GD + +F + +A SG Sbjct: 293 -----KGFVRINQQNAPIIGNVCMDMIMVDVTHI-DCSEGDEVIVFNTQEMIQHIATTSG 346 Query: 352 TTNYDLLVRIGTRYAK 367 T Y+ L I R K Sbjct: 347 TIVYETLTAISPRVHK 362 >gi|118602666|ref|YP_903881.1| alanine racemase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567605|gb|ABL02410.1| alanine racemase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 350 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 19/358 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 I +ALK+N + S N R ++VK NAYG + I P + ++ V+ + E Sbjct: 5 ASISQSALKHNLSVVKKNSLNTRIVSMVKANAYGHHIDLIDPIINHS--DLLGVSEILEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KLR T Q + + I + + N V+ Q S + + + +++ Sbjct: 63 EKLRKTTNQPILLLSGVIKDQELQQAIKLNCQIVVHDKTQ---LSVVNNTKQAIDIWIKI 119 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NRLGLS E N L + I+SH ACAD+ + +N QL F+ ++ Sbjct: 120 NTGMNRLGLSTNEYNHCIKLLGNNPLINIQCIMSHFACADEINHPMNQSQLFEFKK-LTD 178 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + S+A+S+ IL HF RPGI LYG + +H ++ V+ A I+ I+ Sbjct: 179 PVVAKRSMANSAAILSNSASHFDYVRPGIMLYGVSPFNIINHNLKPVMQLSAPIMSIKTI 238 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 A + V YG + + IA IGY DGYP G I + P Sbjct: 239 KADDSVGYGVTWTADKSTAIATIGIGYGDGYPRHAKN-----------GTPVLINNTLCP 287 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIGTRY 365 ++G+++MD+ DI++ + VGD ++G ++++ +A S T Y+LL I +R Sbjct: 288 LVGRVSMDLICVDISNI-NASVGDNAILWGNKQLRIETIAKHSATIAYELLAGISSRV 344 >gi|294054687|ref|YP_003548345.1| alanine racemase [Coraliomargarita akajimensis DSM 45221] gi|293614020|gb|ADE54175.1| alanine racemase [Coraliomargarita akajimensis DSM 45221] Length = 378 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 157/384 (40%), Gaps = 27/384 (7%) Query: 1 MHSNEF---LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M ++ +IDL A + N + A L + R +VVK +AYG G + L +G Sbjct: 1 MSAHPPDQRCWAEIDLAAFERNVRRIQAELPSDVRYVSVVKADAYGHGMPHMVRRLMQSG 60 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V F V +V E ++R I +L + P ++ + + +L IS+ + ++L Sbjct: 61 VDCFAVANVAEAAEIRHMGSGWPILILSPVLPYEQAKLLEYDLSATISTETEAHTLNELA 120 Query: 117 -SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + L++DTG RLG+ + A + +L I +H + AD Sbjct: 121 KRKNSTLKVHLKIDTGMGRLGVWYESARALFDSLQAYPHLKLEGIYTHFSSADSDP-TFT 179 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGP---NYHFQLTRPGISLYGGTDKINK---S 229 +Q +R + + + + + L F R G+ G S Sbjct: 180 QLQRQRLLDFLEQVPIDDLLIHADNSASLESLSGQSPFNAVRVGLLQLGIPPYPQSLLGS 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V + RI LI++ G +SY L R + I + GY DG PLTLS Sbjct: 240 IHVEPVFSFHTRIGLIKELPPGTDISYSRTYTLNRTTRIGILTAGYGDGIPLTLSNR--- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 G+ I G PILG++TMD T+ D++ + VGD + G I + Sbjct: 297 --------GEVLIHGRRCPILGRVTMDQTIVDLSGATDARVGDIATLIGQHGDETISAAE 348 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 + + T ++ L I R + Y Sbjct: 349 FSQTAETIPWETLCSITKRVTRTY 372 >gi|317012750|gb|ADU83358.1| alanine racemase [Helicobacter pylori Lithuania75] Length = 377 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASETFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + P+ I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFPKTPILILGYSPNANASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRVLKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIAYETISTLSKRLERVY 376 >gi|299144129|ref|ZP_07037209.1| alanine racemase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518614|gb|EFI42353.1| alanine racemase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 387 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 148/386 (38%), Gaps = 31/386 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M+ L+I+L L N + + +A +VVK NAYG G KI L G+ Sbjct: 1 MNLTRPAWLEINLDYLIENINKIRNNVREDAEIISVVKSNAYGFGALKIVEILRENGINF 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 F V ++ E + +R ++ +L + + N+ I + +++ Sbjct: 61 FAVATMSEAIAIRKKFKDVKLLILGYTPDYLMNVAVENNITLAIYNYESARTLNEIAKSQ 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + + +DTG NR+G + +K + A D ++ Q Sbjct: 121 NKTATIHIALDTGMNRIGFKNIDDSIEDIKKISKFKNIYIEGVFSHFAAADTNAEYTKRQ 180 Query: 179 LERFRTLI----SHYKGIEA-SLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKS 229 F+ + + I + +SS IL Y RPGI YG T+ K + Sbjct: 181 FNIFKNVTDILEKNKINIPIKHINNSSAILNYNEYSLDAVRPGIIQYGSTEGIKTKYKEL 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ + +A++ ++ GE VSYG + + ++ IA +GY+DG LSG Sbjct: 241 NNVKYIGQIKAQVSNVKIVSKGEKVSYGLTYETSTETKIATIPLGYSDGILRQLSGKID- 299 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDD 345 + G +G+I MD M D++ +GD + I G I + + Sbjct: 300 ----------VLVSGKRCRQIGRICMDQMMVDVSGV-DCNIGDEVVILGSQGNEYIDILE 348 Query: 346 VALASGTT--NYDLLVRIGTRYAKFY 369 +A +Y R K Y Sbjct: 349 IARKVDEIATSYS--CHFSPRLPKVY 372 >gi|94986479|ref|YP_594412.1| alanine racemase, catabolic [Lawsonia intracellularis PHE/MN1-00] gi|166969415|sp|Q1MSD5|ALR_LAWIP RecName: Full=Alanine racemase gi|94730728|emb|CAJ54090.1| alanine racemase, catabolic [Lawsonia intracellularis PHE/MN1-00] Length = 380 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 112/374 (29%), Positives = 169/374 (45%), Gaps = 32/374 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +KI L L+ N + + N V+K NAYG G +A L + GVQ V S+ EG Sbjct: 8 IKIHLERLRYNLRILRSRYPN--VMPVIKANAYGHGIRVVANVLRDEGVQHMAVGSITEG 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNL----IPVISSVPQLTFYSKLMSCGVSHPY 124 LR QA + L G ++ I + I I S+ + YS++ G + P Sbjct: 66 FLLRQEGHQAFLLALLGPFSEEDARIAVVHNITPVIHNIESLQSIVHYSRVHQGGTAVPV 125 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERF- 182 A+++DTG RLG S + + + L++SHL + +V Q+E+F Sbjct: 126 AIKIDTGMGRLGFSSNDYISLIDLLRHTPEVNPILLLSHLVAPEISSLDNVTHNQVEQFA 185 Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-----HPMQT 234 + + + I+ SL +S G+L PNY +RPGI+LYGG S Sbjct: 186 RAYKAIKEAFPTIKTSLTNSPGLLAWPNYIGDFSRPGIALYGGNPFYGTSRVSLGKGFLP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ EA ++ I AG + YG D +AV GYADGY + S Sbjct: 246 VMEVEAPVVAINTVSAGSSIGYGCTYYAKEDIRVAVIGAGYADGYSRSFSN--------- 296 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPD----IKLDDVALA 349 G IKG I+G++ M M M DIT+S S I +GD + G IK +++A Sbjct: 297 --KGWVVIKGKRYRIVGRVCMQMLMVDITNSHSKISIGDKAFLLGGGGSLAIKPEELAEW 354 Query: 350 SGTTNYDLLVRIGT 363 GT +++ +G+ Sbjct: 355 WGTIPHEVCCSLGS 368 >gi|291287316|ref|YP_003504132.1| alanine racemase [Denitrovibrio acetiphilus DSM 12809] gi|290884476|gb|ADD68176.1| alanine racemase [Denitrovibrio acetiphilus DSM 12809] Length = 361 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 152/369 (41%), Gaps = 22/369 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG-CEKIAPALYNAGVQDFFVT 63 +IDL A N + LSG A+VK +AY G E A F V Sbjct: 9 RPTYAEIDLRAFGKNIETARELSG-TDIIAIVKADAYSHGELEMCGYAYQKHNCTKFAVA 67 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 ++ E + LR + + + G E+ + + + + L + Sbjct: 68 TILEAIILREHLGEGVSIFVLGYIDETFYEEAYEHNIIFTINDNDTATKYNEFLQRKNLH 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++++TG NRLG + + S + I+SHL+ AD Q+E Sbjct: 128 ANVTVKINTGMNRLGFRTD--MSWYEFSSAYPALRPIHIMSHLSSADTDR-EYTYNQIEE 184 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F I+ K + +S + G F LTRPGI LYG D ++ V+ +R Sbjct: 185 FHNFIAKNKIRCHTSLLNSSGIAGYENKFSLTRPGIMLYGYLD-GGYDVKLEKVMRIYSR 243 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I+ I+ G+ VSY + R+ I V IGYADGYP LS F Sbjct: 244 IVQIQYLRKGDAVSYSRKFHADRNMAIGVVPIGYADGYPRCLSNKS-----------HVF 292 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGD-YIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G P++G + MDM M D+T G +++ G I D++A +GT +Y++L Sbjct: 293 VDGIKCPVIGNVCMDMMMVDLTGVNL--NGSLKVEVLGDSIDADELAEMAGTISYEILTG 350 Query: 361 IGTRYAKFY 369 I R + Y Sbjct: 351 IQNRIPRIY 359 >gi|205354317|ref|YP_002228118.1| alanine racemase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274098|emb|CAR39107.1| alanine racemase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629441|gb|EGE35784.1| alanine racemase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 358 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 166/360 (46%), Gaps = 25/360 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + + P+++SV Q + + + + P +Q+ Sbjct: 76 LRKILSADAMVVLLNGVMPQAMPLCCAQQITPLLNSVDQVMAWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RL ++ + ISHLA AD P +N Q + Sbjct: 136 DSGMSRLAAIFRQRGWAAPDYI----------ISHLANADRPDHALNVYQHTLLQQAKEA 185 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 186 FPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLSILRVQDV 244 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G + YG TR IA + GYADG P L +G +P Sbjct: 245 PVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL-----------RPPAGVCWRGVRLP 293 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +LG++ MD M D + GD ++ G L++VA A T Y+++ R+G R+ + Sbjct: 294 VLGRVCMDSFMVDARAIMP-TPGDVVEFIGVSQTLEEVAAACDTIPYEIMTRLGGRFRRI 352 >gi|317009599|gb|ADU80179.1| alanine racemase [Helicobacter pylori India7] Length = 377 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 163/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N++++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVDTASLRHNFNAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSTMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH-----YKGIEASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLEQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEAILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|258543958|ref|ZP_05704192.1| alanine racemase, biosynthetic [Cardiobacterium hominis ATCC 15826] gi|258520804|gb|EEV89663.1| alanine racemase, biosynthetic [Cardiobacterium hominis ATCC 15826] Length = 365 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 163/359 (45%), Gaps = 22/359 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID+ AL++N + +G A+ AVVK +AYG G + PAL + V F V S++E ++ Sbjct: 18 IDVAALRHNVRVLRQQAGAAKLVAVVKADAYGHGVANVLPALTD--VDGFAVASMDEALQ 75 Query: 71 LRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR + +L GI E + +P + S QL + + ++VD Sbjct: 76 LRQLGVGQPVLLLEGIFAADEAALCAQHDFVPCVHSPEQLAWLRGVDG----ISAWVKVD 131 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 +G +RLG + +A + + + + + SH ACAD QL R ++ Sbjct: 132 SGMHRLGFAAADAASWLPQVLSLQQVRWLGVASHFACADAEDLSDAQAQLARLDA-LALP 190 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIR 246 G + LA+S+ + P ++ R G++LYG + + ++ V++ + +++ +R Sbjct: 191 AGWQRCLANSAALFALPEARGEVVRAGLALYGMSPFADGDAARLGLRPVLSLQTQVLAVR 250 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + AG+ Y + +A A+GY DG+P + V + + G Sbjct: 251 RLQAGDFAGYSHGFQAQVAGNLATIALGYGDGFPRAI----------VSGAVQLLLNGKR 300 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G++ MDM + + + + VGD + +FG + VA + T Y L + R Sbjct: 301 YPLVGRVAMDMALLWLGED-TAAVGDAVLVFGEGNPAERVAAQAATIPYTLTTMLTARV 358 >gi|146328630|ref|YP_001209245.1| alanine racemase [Dichelobacter nodosus VCS1703A] gi|166967412|sp|A5EW54|ALR_DICNV RecName: Full=Alanine racemase gi|146232100|gb|ABQ13078.1| alanine racemase [Dichelobacter nodosus VCS1703A] Length = 357 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 151/360 (41%), Gaps = 20/360 (5%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+L AL++NW + S A V+K +AYG G +A L + + F V+ +EE + Sbjct: 8 INLNALRHNWALIKQRSLPATPMVVLKADAYGHGMTTVAKTLDD--ARYFAVSCIEEAIA 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 LR + +L G++ E ++ + + V L S L+VD+ Sbjct: 66 LRHLGIDTPVVLLEGVYRADELLLCEYYQFDTL--VHNFRQMQWLKEFNGSVKAWLKVDS 123 Query: 131 GFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY 189 G +RLG + E A F Q +I+H AC+D+ QL L+ Sbjct: 124 GMHRLGFTQDEIAEAFAQAHSLPVNIQWQGVITHFACSDEDDLTHAKKQLACMDRLVLPA 183 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIR 246 +S+ I P H+ TR GI LYG + ++ + +Q V+T I+ +R Sbjct: 184 HWKRCYA-NSAAIFALPQAHYDYTRSGIMLYGLSPFMHGDGSAYGLQPVMTVITEILAVR 242 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 E YG +A A+GY DG+ T++ I G Sbjct: 243 HLEKNETAGYGQGFTAPESGWLATIALGYGDGFARTITSGAV----------PVLIAGQR 292 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 P++G++ MDM M + E G +++FG + ++VA A+GT + L + R Sbjct: 293 YPLVGRVAMDMAMVWLGSDRYAE-GTIVELFGSHLPTEEVARAAGTIPHTLTTMLMPRVH 351 >gi|332673780|gb|AEE70597.1| alanine racemase [Helicobacter pylori 83] Length = 377 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 159/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNSASLRHNFSAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + IE + S N L RPGI LYG T++ Sbjct: 188 LEQLLEQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSSGMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG +A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASGIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|237743978|ref|ZP_04574459.1| alanine racemase [Fusobacterium sp. 7_1] gi|229433009|gb|EEO43221.1| alanine racemase [Fusobacterium sp. 7_1] Length = 354 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 166/373 (44%), Gaps = 32/373 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +I L GV F V ++ Sbjct: 2 RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ Q L++ ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQ---LQFLVNNKLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA N L L I SHL+ +D+ + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDEAKKVIEFCKNNNL-NLVGIFSHLSDSDENTVETKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + +++ +++S+GI + L R GI +Y T K+ ++ + T ++R Sbjct: 178 KKIVNSLNLKYIHISNSAGITNFQNDIVGNLVRMGIGMYSFTGN-KKTPYLKNIFTIKSR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 VLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355 I + I+G I MDMTM I + +++GD + + DI LD++ + Sbjct: 286 INNHRCEIIGNICMDMTMIRIPKEVENSVKIGDEVTVINADI-LDNLN-----IPELCVW 339 Query: 356 DLLVRIGTRYAKF 368 + + IG R + Sbjct: 340 EFMTGIGKRVKRI 352 >gi|326575825|gb|EGE25748.1| alanine racemase [Moraxella catarrhalis CO72] Length = 380 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 164/379 (43%), Gaps = 37/379 (9%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + I AL +N + L + A+VK +AYG G + P L + F V + E Sbjct: 6 ITIHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPVLIH--ADGFGVACLSE 63 Query: 68 GVKLRL-----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 + ++ + + + + K+ D + +I QL + + Sbjct: 64 AMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQF 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 H L+ +TG +RLG + + + + ++ SH ACADD S +N+ Q+ Sbjct: 124 CHTIWLKYNTGMSRLGFNDDHIITAAKSLADAG--YRLILTSHFACADDKSHPLNAQQIS 181 Query: 181 RFRTLISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 +F ++ + L +S+GI + H R GI+LYG + K+ + Sbjct: 182 KFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLM 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A+++ I AG+ + Y + IAV +IGY DGYP Sbjct: 242 PAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPR------------ 289 Query: 294 VFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 V +G K + ++ I+G++ MDM M DI D L I + + ++G +D+VA+ Sbjct: 290 VVMGAKVSVTDTSGNRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAM 348 Query: 349 ASGTTNYDLLVRIGTRYAK 367 +GT Y+L+ R+ TR + Sbjct: 349 CAGTIGYELMCRLTTRPKR 367 >gi|294339132|emb|CAZ87486.1| Alanine racemase, catabolic [Thiomonas sp. 3As] Length = 367 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 153/380 (40%), Gaps = 32/380 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I AL +N + + ++ AVVK NAYG G + AL F + Sbjct: 3 RPISAVIHTAALSHNLLRVRQATPASKVWAVVKANAYGHGIARAYGALRT--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E KLR I +L G P + NL V+ Q+ + + +H Sbjct: 61 LTEAEKLRALGWVGPILLLEGCFAPEDLALCERLNLWHVVHCREQIDWLAVHRG-NRTHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+++TG NR+G S + ++H ACAD+ L RF Sbjct: 120 VFLKMNTGMNRVGFSPEAYAAAWERLNALPQVGEITHMTHFACADEAGG--IDEALARFA 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDK----INKSHPMQTVVT 237 + H G S++ ++ G + RPGI+LYG + ++ ++ Sbjct: 178 RGVGHLPGERTLSNSAAALVHGADPRVASDWVRPGIALYGSSPTGLALDAAHWKLRPAMS 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I I+ AGE V YG + R I V A GYADGYP G Sbjct: 238 LRSELIDIQHIAAGECVGYGARFTAPRPMRIGVVACGYADGYPRVAPN-----------G 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPD----IKLDDVALA 349 + G ++G+++MDM D+ + +G + ++G D + +D+VA A Sbjct: 287 TPIVVDGVRTQLVGRVSMDMITVDLEPVFAAGNQPMIGSPVLLWGQDAQAELSIDEVAAA 346 Query: 350 SGTTNYDLLVRIGTRYA-KF 368 +GT Y+L+ + R + Sbjct: 347 AGTLGYELMCALAARVPVRV 366 >gi|312602482|ref|YP_004022327.1| alanine racemase [Burkholderia rhizoxinica HKI 454] gi|312169796|emb|CBW76808.1| Alanine racemase (EC 5.1.1.1) [Burkholderia rhizoxinica HKI 454] Length = 356 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 144/346 (41%), Gaps = 20/346 (5%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 + ++ AVVK NAYG G ++ P L + F + +EE VKLR I +L Sbjct: 22 RRHASKSKLWAVVKANAYGHGLARVFPGLRS--TDGFGLLDLEEAVKLRELGWAGPILLL 79 Query: 84 YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL 143 G + + D + + ++ L++++G NRLG + Sbjct: 80 EGFFRPTDIDVIDRYSLTTTVHCDEQLRMLEMARLSKPVNIQLKMNSGMNRLGYVAGKYR 139 Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203 + +++H + AD QLE F G SLA+S+ L Sbjct: 140 AAWERARACPSVGQITLMTHFSDADGEMGI--RHQLEVFEHGAEGIAG-SRSLANSAATL 196 Query: 204 LGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259 P HF RPGI LYG + + +Q +T + +I ++ G+ V YG Sbjct: 197 WHPYAHFDWVRPGIILYGASPSGVSAAIEGLGLQPAMTLSSELIAVQTVEPGDSVGYGSA 256 Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 K I V A GYADGYP G + G ++G+++MDM Sbjct: 257 FKARERMRIGVVACGYADGYPR-----------CAPEGTPVQVGGVRTRVVGRVSMDMLT 305 Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 D++ + +G +Q++G D+ +DDVA A GT Y+L+ + R Sbjct: 306 VDLSSCPNAVIGSPVQLWGADVPIDDVAAACGTVGYELMCAVAQRV 351 >gi|254304302|ref|ZP_04971660.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324494|gb|EDK89744.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 354 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 32/373 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +IA L GV+ F V ++ Sbjct: 2 RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ QL F ++ ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLHFL---VTNKLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA L L I SHL+ +D + Q+ +F Sbjct: 119 LKFDTGMTRLGFEVDEAEKVIEFCKKNNL-NLVGIFSHLSDSDGNTMETKIFTLEQINKF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + +I+ +++S+GI + L R GI +Y T K+ ++ + T ++R Sbjct: 178 KKIINSLNLEYVHISNSAGITNFHDDILGNLVRLGIGMYSFTGN-KKTPYLKNIFTIKSR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 VLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355 I + I+G I MDMTM I + I++GD + + DI LD++ + Sbjct: 286 INNHRCEIIGNICMDMTMIRIPKEIENSIKIGDEVTVINADI-LDNLN-----IPELCVW 339 Query: 356 DLLVRIGTRYAKF 368 + + IG R + Sbjct: 340 EFMTGIGKRVKRI 352 >gi|326315128|ref|YP_004232800.1| alanine racemase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371964|gb|ADX44233.1| alanine racemase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 369 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 149/380 (39%), Gaps = 35/380 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R I AL+ N A + +AR AVVK NAYG G E+ L G F + Sbjct: 3 RPIRATIHTAALQQNLARARAATPDARVWAVVKANAYGHGIERAFEGLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + I +L G+ P ++ +L V+ Q+ + S + H Sbjct: 61 LGEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSLWHVVHCDEQIDWLSAHKTHA-PHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++H + AD P + Q+E F Sbjct: 120 VFLKMNSGMNRLGFPPARYRAAWARLNALPQVDEISFMTHFSDADGPRG--IAHQIEAFC 177 Query: 184 TLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKSHPMQT----V 235 T G E ++++S+ L R GI LYG + Sbjct: 178 TATQDLPG-ERTVSNSAATLRHAGGDARVRGDWVRAGIVLYGSAADHPEHTAAHWGLAPT 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ARII ++ AG+ V YG R I V A GYADGYP Sbjct: 237 MTLSARIIGTQQLQAGDTVGYGSSFTADRPLAIGVVACGYADGYPRHA-----------P 285 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGPD-----IKLDDV 346 G + G +G+++MDM D++ VG ++G + +DDV Sbjct: 286 TGTPVLVNGVRTRTVGRVSMDMITVDLSPLHEAGVEAGVGSEATLWGRASCGAVLCIDDV 345 Query: 347 ALASGTTNYDLLVRIGTRYA 366 A +GT Y+L+ + R Sbjct: 346 AQPAGTVGYELMCALAPRVP 365 >gi|256846795|ref|ZP_05552250.1| alanine racemase [Fusobacterium sp. 3_1_36A2] gi|256717761|gb|EEU31319.1| alanine racemase [Fusobacterium sp. 3_1_36A2] Length = 356 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 165/375 (44%), Gaps = 34/375 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +IA L GV+ F V ++ Sbjct: 2 RTWIEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ Q L+ ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQ---LQFLVDKNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA N L L I SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177 Query: 183 RTLISH-YKGIEASLASSSGIL--LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + +++ +E S+S + + L R GI +Y T K+ ++ + T + Sbjct: 178 KKIVNSLNLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTSYLKNIFTIK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R++ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 SRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGY 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN--- 354 I + I+G I MDMTM I + I++GD + + +I LD++ Sbjct: 286 VLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGDEVTVINANI-LDNLN-----IPELC 339 Query: 355 -YDLLVRIGTRYAKF 368 ++ + IG R + Sbjct: 340 VWEFMTGIGKRVKRI 354 >gi|332798388|ref|YP_004459887.1| alanine racemase [Tepidanaerobacter sp. Re1] gi|332696123|gb|AEE90580.1| Alanine racemase [Tepidanaerobacter sp. Re1] Length = 380 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 23/342 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+L + +N +++ L GN AVVK NAY +++ + G V +EEG Sbjct: 10 LEINLDTIASNTNNIKRLIGNKELMAVVKGNAYTHDMIEVSKTVLKNGASRLGVGRLEEG 69 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQ 127 + LR A I + GQE+ I ++ + + + S S ++ Sbjct: 70 IYLRKAGITAPILNMCLNMEGQEREIVKYDIAQTVCDLDTVHRLSCEAAKMNKSAKIHVK 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI- 186 +DTG R+G+ ++AL+F + ++ + +H A D S QL+ F +++ Sbjct: 130 IDTGMGRIGIFPEDALNFISEVSAMQNIEIEGVYTHFATPHD--KEFMSYQLKLFSSVLK 187 Query: 187 ---SHYKGIEASLASSSGIL-LGPNYH--FQLTRPGISLYGGTDKINK--SHPMQTVVTA 238 I +SS P+ F + R G +YG + + + T Sbjct: 188 RLNQEGYSIPLKHCASSEAFVAMPDTWEKFDMVRIGDLIYGVYNSEEEKDKIKVNFAQTF 247 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+ ++K + Y +D++IA GY DGY S G Sbjct: 248 KTTIVFLKKLGPNTSIGYDRTYITDKDTIIATLPAGYNDGYTKLYSN-----------NG 296 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 ++G P++G++ D M D+T+ +VGD + ++G Sbjct: 297 IVLVRGKKAPVVGRVCADQMMIDVTNIQDAKVGDEVVLWGRQ 338 >gi|188527764|ref|YP_001910451.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori Shi470] gi|226711048|sp|B2UU89|ALR_HELPS RecName: Full=Alanine racemase gi|188144004|gb|ACD48421.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori Shi470] Length = 377 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 156/381 (40%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVNTASLRHNFSAVKSIVPKDAHIMAVVKANAYGVGAIKASEIFLQEGAHYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++L + + I +L ++ D +L +I S+ Q +S+ L Sbjct: 68 ALELHSHFSKTPILILGYSPNSNASMLIDNDLSAMIFSLEQAEVFSQTALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIEASLA---------SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + S N L RPGI LYG T++ Sbjct: 188 LEQLSNQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|322633763|gb|EFY30503.1| alanine racemase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] Length = 341 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 154/353 (43%), Gaps = 22/353 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGT 338 >gi|227499508|ref|ZP_03929615.1| possible alanine racemase [Anaerococcus tetradius ATCC 35098] gi|227218387|gb|EEI83638.1| possible alanine racemase [Anaerococcus tetradius ATCC 35098] Length = 373 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 139/348 (39%), Gaps = 26/348 (7%) Query: 29 NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88 ++ AV+K NAYGLG IA + V F V S E LR + I +L + P Sbjct: 26 DSPICAVIKANAYGLGAVPIANYIEEY-VSYFAVASFNEAKVLRASNIKKPILILGYVSP 84 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148 + + N+ I + + + + +DTG RLG E D Sbjct: 85 EEAILSSKYNIEIPIYDLAYAKQINDKLDS--KLDVHIALDTGHGRLGFRPFEFEDIL-K 141 Query: 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQ---LERFRTLISHYKGIEASLASSSGILLG 205 + + + SH + AD+ Q F+ + IE ++S + Sbjct: 142 LKDLQNLHIKGAFSHFSTADEEDIEFTQRQNKIFNGFKKDLGREFDIENFHIANSAATIF 201 Query: 206 PNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261 N + R GISLYG K + + ++ + ++ G +SYG Sbjct: 202 HNIKGDMQRIGISLYGIYPSEYLLERKDVELSKAFSIKSVVSFVKNIEKGTSLSYGRSFI 261 Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 +D IA +IGYADG+ S G+ I G + + G++ MD M D Sbjct: 262 ADKDMKIATISIGYADGFFRAFSN-----------KGEVLINGKIAKVCGRVCMDQIMVD 310 Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++ + +GD ++I+ PD+ + A GT Y+L+ + R + Y Sbjct: 311 VSNI-DVNIGDEVEIY-PDLYKE--ANKIGTIPYELMTALSLRVIRVY 354 >gi|314922758|gb|EFS86589.1| alanine racemase [Propionibacterium acnes HL001PA1] gi|314965676|gb|EFT09775.1| alanine racemase [Propionibacterium acnes HL082PA2] gi|315094626|gb|EFT66602.1| alanine racemase [Propionibacterium acnes HL060PA1] gi|315105345|gb|EFT77321.1| alanine racemase [Propionibacterium acnes HL050PA2] gi|327328857|gb|EGE70617.1| alanine racemase [Propionibacterium acnes HL103PA1] Length = 352 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 143/358 (39%), Gaps = 24/358 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81 M +G+ + VK +AYG G +++ + V +V EG +L I Sbjct: 1 MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIL 60 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140 L P + + + L SK GV+ + VD+G R+GL + Sbjct: 61 KLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120 Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLIS----HYKGIEAS 195 + T + K ++ + +HL +D P +++ F T +S H Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180 Query: 196 LASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGEL 253 ++SG +LG + + R GI YG + + ++ + + ++ G+ Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWISHVTFVKTVSVGDT 240 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 + YG + + IA +GYADG LS G I+G + PI+G+I Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGYVLIRGSVHPIVGRI 289 Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 MD M D+ ++ VGD + + G + DD+A GT +Y++ I R + Sbjct: 290 CMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISKRVNR 347 >gi|320109228|ref|YP_004184818.1| alanine racemase [Terriglobus saanensis SP1PR4] gi|319927749|gb|ADV84824.1| alanine racemase [Terriglobus saanensis SP1PR4] Length = 397 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 163/399 (40%), Gaps = 43/399 (10%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + ++ + L N ++ A + AVVK + YG G + AP L AG + Sbjct: 7 NAMRPVWAEVSASKLTRNLRAVQA-TAGVDVLAVVKADGYGHGAVECAPVLAAAGAKWLG 65 Query: 62 VTSVEEGVKLRLY------TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 VTSVEEGV++R R+ V+ G+ G+ L PV+ L Sbjct: 66 VTSVEEGVRVRQALGILPQGIAPRVLVMCGVWAGEAVAAIRYALTPVVWEPYHLDLMEAE 125 Query: 116 MSC--GVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 ++VDTG R G+ + + +L ++SHLA A+ Sbjct: 126 AKKLGLRDVAVHVEVDTGMARQGVRPGAQMAALLQRFGPESRLKLEGVMSHLASAEIVHG 185 Query: 173 HVNSVQLERFRTLISHYK--GIEASLASSS------GILLGPNYH--------FQLTRPG 216 Q+ RF + + G+ +L ++ P +TR G Sbjct: 186 AQTESQMARFACALEQVRETGLRPALVHVGNTSAVDCGVVMPQLRVMAESLGAMPMTRAG 245 Query: 217 ISLYGGTDKINKSHPMQTV---VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273 ++LYG + P +T + R++ +R+ AG+ V YGG + +A+ + Sbjct: 246 LALYGYALDLEGGAPELHPEPVMTWKTRVVSLREVQAGDHVGYGGTFTAVKTMRLALLPV 305 Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 GYADG LS G + G ++G+++MD+T+ D+T+ +E+G+ Sbjct: 306 GYADGLRRELS----------SPAGAVLLHGRRAAVVGRVSMDLTIVDVTEIPGVEIGEE 355 Query: 334 IQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368 + G I ++ A + T Y+++ I R ++ Sbjct: 356 AVLIGAQGAERIGAEEHARWAETIPYEIICGISERVSRV 394 >gi|254779539|ref|YP_003057645.1| Alanine racemase [Helicobacter pylori B38] gi|254001451|emb|CAX29451.1| Alanine racemase [Helicobacter pylori B38] Length = 377 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 160/381 (41%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+ ++ ++ +A AVVK NAYG+G K + G V +++E Sbjct: 8 VEVDTASLRHNFSAVKSIIPKDACVMAVVKANAYGVGAIKASEIFLQEGANYLGVAALDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR Y + I +L ++ D +L ++ S Q +S++ L Sbjct: 68 ALELRSYFSKTPILILGYSPNSNASMLIDNDLSAMVFSFEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ--- 233 + + IE + S N L RPGI LYG Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNEMKESCPTIL 247 Query: 234 -TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 VV+ +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVVSLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIK----LDDVAL 348 + I + P++GK+ MD + D + GD + +FG ++A+ Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNDI-QAKEGDEVILFGDKSTKANDASEIAV 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|290981363|ref|XP_002673400.1| tentative alanine racemase [Naegleria gruberi] gi|284086983|gb|EFC40656.1| tentative alanine racemase [Naegleria gruberi] Length = 421 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 156/399 (39%), Gaps = 49/399 (12%) Query: 9 LKIDLTALKNNW----HSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVT 63 ++L + N + + + VVK NAYG G + LY ++ F V Sbjct: 32 AIVNLRNITENVENTVNFAKNYNQDIHVMPVVKANAYGHGDTPVVRELYNELSIKQFAVN 91 Query: 64 SVEEGVKLR----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS--SVPQLTFYSKLMS 117 V+EGVK+R I VL P + K NL P IS + T + + Sbjct: 92 RVKEGVKIRSNLSKENANIEILVLGYAIPEEVKECVTYNLTPTISGSRLIVETLFRECEK 151 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI-----ISHLACADDPSS 172 + L+VDTG R G ++ +F + + I +H + AD+ S Sbjct: 152 QDKTINVHLKVDTGMGRFGAHPEKLENFLRWFTINPMKLYNRIKITGVFTHFSSADEMSP 211 Query: 173 HVNSVQLERFRTLISHYKG----------IEASLASSSGILLGPNYHFQLTRPGISLYGG 222 Q +F + + + +S+G L P H + RPGIS+YG Sbjct: 212 DYTREQFYKFMEVKKMIENHQVSRVFEKPLTYHCCNSAGTLFFPEMHMDMIRPGISIYGL 271 Query: 223 TDKINKSHPMQTV-----VTAEARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYA 276 + ++ P +T + + ++K G VSYG D +A+ +GY Sbjct: 272 SPSNDRDDPRLPFKLKPALTVVSHLGRVQKFPKGSPVSYGNTYTVAEDDETLALVPVGYG 331 Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD--SLSIEVGDYI 334 DGY +G I+G PI+G+I MD + I+ +++ D + Sbjct: 332 DGYKRINTG-----------KAHVLIRGEECPIVGRICMDQFVVKISPTVVDRVKINDEV 380 Query: 335 QIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + G ++ + V+ S T NY+++ + R + Y Sbjct: 381 VLIGEQDGKEVTCEMVSHWSNTINYEVVTALLPRLKRVY 419 >gi|217033976|ref|ZP_03439399.1| hypothetical protein HP9810_883g46 [Helicobacter pylori 98-10] gi|216943609|gb|EEC23057.1| hypothetical protein HP9810_883g46 [Helicobacter pylori 98-10] Length = 377 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ ++L++N+ ++ ++ +A AVVK NAYG G K + G V ++ E Sbjct: 8 VEVNTSSLRHNFGAVKSIVPKDAHIMAVVKANAYGAGAIKASEIFLQEGANYLGVATLYE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNSNASMLIDNDLSTMIFSLEQAEVFSQMALKSQKRLKIHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIEIIKKIRALKGLEVEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISH--YKGIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + IE + S N L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRFLNLYRPGIMLYGFYPSNGMKETCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A+ Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIAV 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|313680417|ref|YP_004058156.1| alanine racemase [Oceanithermus profundus DSM 14977] gi|313153132|gb|ADR36983.1| alanine racemase [Oceanithermus profundus DSM 14977] Length = 358 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 26/372 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63 L+IDL AL N + + +A+ AVVK +AYG G ++A L GV+ F V Sbjct: 2 RPTWLEIDLGALGRNCAHLAGRAPDAQLIAVVKADAYGHGAVRVARYLRERCGVRRFAVA 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + EG +LR + +L +HP + L P + ++ ++ G Sbjct: 62 TSGEGAELRAAGIAEPVLLLGALHPDDAEGAARHGLTPTLVTLAAARAFAAARPGGR--- 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++VD+G R+G++ E F L ++ I +H A AD+ + QL F Sbjct: 119 VQVKVDSGMGRVGVAPAELAGFMAAVEGLGL-EVEAIYTHFAVADEDEAE-TRRQLAVFL 176 Query: 184 TLISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + A+S+ IL G RPG++LYG + ++ ++ V+ +AR Sbjct: 177 EAARALPRRYPLHAANSAAILAGLGTGLDFVRPGVALYGLPPDMKEAPGLEPVLAWKARP 236 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 +++ AG V YG + + IA GYADG+ LS G Sbjct: 237 TQVKRLPAGHGVGYGLSYRAGGEEWIATLPFGYADGFSRALSNR-----------GWVRW 285 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYI-QIFGPDIK----LDDVALASGTTNYDL 357 +G P+ G+++MD T + + + + D + ++ PD+ L A A GT +Y+L Sbjct: 286 RGGYAPVAGRVSMDQTTVRLPEPVGL---DEVFEVVTPDLDERTGLTGRARALGTIHYEL 342 Query: 358 LVRIGTRYAKFY 369 + R + Y Sbjct: 343 ATALSRRLPRIY 354 >gi|296392787|ref|YP_003657671.1| alanine racemase [Segniliparus rotundus DSM 44985] gi|296179934|gb|ADG96840.1| alanine racemase [Segniliparus rotundus DSM 44985] Length = 397 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 159/384 (41%), Gaps = 36/384 (9%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++ +D A+ +N + S A+ AV+K NAYG G +A AG V ++ Sbjct: 5 VQATVDHHAIAHNVRLLAQASAPAQVIAVLKANAYGHGAVPVARTALAAGAAQIGVATLA 64 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI------PVISSVPQLTFYSKLMSCGV 120 E +LR +A I E + I V +S + Sbjct: 65 EAFELRQGGIEAPIIAWLHAFDPDEAVAVFAEAIASGIELGVSTSSQVRAVAEAALRADQ 124 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSV 177 A++VDTG NR G + E + N + Q+ + SHLA AD P N+ Sbjct: 125 LAVVAVKVDTGLNRGGFARGEWRKAFADLANAEAAGAVQVRGVFSHLANADRPEYRTNAE 184 Query: 178 QLERFRTLI-----SHYKGIEASLASSSGILLGPNY------HFQLTRPGISLYGGTDKI 226 Q R + + LA+S +L P F TRPG+++YG + + Sbjct: 185 QARSLREAVSFARAAGLAPELVHLANSPAVLTRPKALVNELPVFNATRPGVAVYGLSPIM 244 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + + +T AR+ L ++ AG+ VSYG D+ +A+ IGYADG L+G Sbjct: 245 GRDFGLIPAMTLTARVGLTKRIHAGDGVSYGHDFVAASDTTLALLPIGYADGLQRALAGK 304 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGP----DI 341 + I G P +G++ MD + D+ + GD +FGP + Sbjct: 305 F-----------EVSIGGRRYPGVGRVCMDQVLVDLGPGEPKVREGDTAVLFGPGSDGEQ 353 Query: 342 KLDDVALASGTTNYDLLVRIGTRY 365 DD A A+GT NY+++ ++ R Sbjct: 354 TADDWARAAGTINYEIVTQLRGRV 377 >gi|206603563|gb|EDZ40043.1| Alanine racemase [Leptospirillum sp. Group II '5-way CG'] Length = 406 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 99/392 (25%), Positives = 165/392 (42%), Gaps = 40/392 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 RL +DL AL NN + + ++ VVK +AYG G +A GV V Sbjct: 19 SRSRLIVDLDALSNNLEWIRSRLPSSIEILPVVKADAYGHGMLPVAKNFVEMGVPALGVM 78 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EEGV+LR A++ V+ GI P + + L PVI + +L + ++ + Sbjct: 79 GLEEGVRLRKAEISAKVIVMGGILPSELEECISCGLTPVIHN-CELLEAALDLARKMEVH 137 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+ D G RLG ++ + ++ ++SH ++ S S Q+ F Sbjct: 138 IHLKFDVGMGRLGFLPEDISWVCDKIEMEPSIRIEGVMSHFPEGENISE--TSRQIAIFG 195 Query: 184 TLISHYK--------GIEASLASSSGILL------------GPNYHFQLTRPGISLYGGT 223 ++ LA+S+ L Y RPGI LYG Sbjct: 196 CMVDELWDRGVLYARPFVIHLANSAAFLSGQYSVADKKNRAWEKYARYWIRPGILLYGIP 255 Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ + +AR+I ++ G +SYGG L+R + + V +GYADG P L Sbjct: 256 VDPLPLPGLKPAMEIQARLISLKTLSEGSRISYGGTFSLSRKTRVGVLGMGYADGLPREL 315 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-- 340 S G P LG++ MDM M D+TD+ + +GD++ + G Sbjct: 316 SNWGWASRM-----------GQKFPFLGRVCMDMVMVDVTDAESPVCLGDWMTVLGNGDD 364 Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 + ++A + Y+++ R+G R +FY+ Sbjct: 365 LSMSAWEIAGRIRSIPYEIVCRMGNRSPRFYS 396 >gi|15639668|ref|NP_219118.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str. Nichols] gi|3322978|gb|AAC65644.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str. Nichols] Length = 357 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 146/361 (40%), Gaps = 32/361 (8%) Query: 30 ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89 AR VK +AYG G +A A + GV F V V+E +LR +A I L Sbjct: 6 ARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILCLSTPTAE 65 Query: 90 QEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145 + + + + VIS + + + G + +++DTG R+G + EA Sbjct: 66 EISSLIEHRVHTVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACAL 125 Query: 146 THNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLISHYKGIEASLA----- 197 L + +H + AD + +Q F + + + S+ Sbjct: 126 VQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRAHFMHCVQYIRKSGISIPLVHAA 185 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAEARIILIRKALAGELV 254 +S+ +L P HF + RPG+ YG V+ ++ I+K AG V Sbjct: 186 NSAALLCHPRAHFDMVRPGLLAYGYAPESVHPAVRSVFLPVMELVTQVRAIKKIPAGAYV 245 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314 SY + ++ + + IGYADG LS G + I G P++G I Sbjct: 246 SYQRLWRAHTETHVGILPIGYADGVMRALS-----------PGLQVCIGGKWYPVVGAIC 294 Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTTNYDLLVRIGTRYAKF 368 MD + D+ L + VGD + +FGP D +A +GT Y+LL IG R + Sbjct: 295 MDQCVVDLGTPLRVTVGDRVTLFGPQDAGGPGQGADVLASHAGTIPYELLCAIGKRVERV 354 Query: 369 Y 369 Y Sbjct: 355 Y 355 >gi|116626436|ref|YP_828592.1| alanine racemase [Candidatus Solibacter usitatus Ellin6076] gi|116229598|gb|ABJ88307.1| alanine racemase [Candidatus Solibacter usitatus Ellin6076] Length = 376 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 30/377 (7%) Query: 11 IDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 + + N+ ++ ++ A VVK +AYG G +++ L G + V+SVEE V Sbjct: 11 VSREQIARNYRNVRHVAGPRTEVAGVVKADAYGHGALEVSRVLLAEGARWLAVSSVEEAV 70 Query: 70 KLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQ 127 LR ARI V+ G P + + D +L P + S+ Q+ + S G PY L+ Sbjct: 71 HLREGGIRDARILVMGGFLPYEANSVVDFDLTPAVHSLSQIRDIDRLAASAGKPLPYHLK 130 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI- 186 +D+G RLG A + + + L +++H A A D +S + Q F + Sbjct: 131 IDSGMGRLGTRAA-AAEILATLADSRHASLEGLMTHFASAADYTSPQTAEQTAYFEAICG 189 Query: 187 ---SHYKGIEASLASSSGILLG--PNYHFQLTRPGISLYGGTDK-----INKSHPMQTVV 236 + SS+ + + + L R G +LYG + ++ + Sbjct: 190 TLRAAGVTAPYLHTSSTIAIGYGRNSPAYTLVRAGHALYGYVSPARGEAPPQLLNVKPAL 249 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +A+++ ++ G LV YGG + R I + GYADG LS Sbjct: 250 TWKAKLLAVKDIPEGALVGYGGSFRAPRAMRIGILGAGYADGMFHRLSNR---------- 299 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 GK G + I+G ++MD+T D++ + ++ GD + + G + +A +GT Sbjct: 300 -GKVIADGKLTAIIGTVSMDLTTIDLSHTAALGPGDEVTLLGVEGDASLDAQQIAKVAGT 358 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y++L I +R + Y Sbjct: 359 ISYNILCSISSRVHRVY 375 >gi|253583474|ref|ZP_04860672.1| alanine racemase [Fusobacterium varium ATCC 27725] gi|251834046|gb|EES62609.1| alanine racemase [Fusobacterium varium ATCC 27725] Length = 364 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 161/373 (43%), Gaps = 30/373 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID+ LK N + + L V+K N+YG G +IA L G++ F V S+ Sbjct: 2 RAWLEIDMDNLKYNLNKIKELVHGTNVLGVIKANSYGFGAIEIAKELSKFGIEIFGVASL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++LR + I +L + + +I + +SS+ Q+ F S + Sbjct: 62 EEAMELREGGIEEEILILGSLFNDEIEIAAEKKFQITVSSMRQIEFLE---SNKIDAEIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERF 182 +++DTG RLG + E N+ L ++ I SHL+ AD + Q+ +F Sbjct: 119 IKIDTGMGRLGFTPSEGRKAVDYCINRGL-KVVGIYSHLSDADGMNDEAYNYTKEQINKF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + + +S GIL + + L R GI +YG + + V T + R Sbjct: 178 KIFEEYKTIKYIHILNSGGILRFNDGFKGNLVRAGICMYGMLGN-ERVPGFKRVFTMKTR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I+ IR +SYG KL + A AIGYADG S Sbjct: 237 ILFIRTLEEDSYISYGRTIKLKKGETFATLAIGYADGMKKEFSN-----------KTYAL 285 Query: 302 IKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTN---YD 356 I+G PI+G+I MDM M I + I +G + DI ++++ + + +D Sbjct: 286 IEGEKCPIVGEICMDMCMVKIPESILKKINIGTEAIVIRDDI-IEEI----NSIHKSTWD 340 Query: 357 LLVRIGTRYAKFY 369 +L IG R + Y Sbjct: 341 ILTGIGRRVYRVY 353 >gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 836 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 26/374 (6%) Query: 11 IDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 I+L +++N + + L R +VK AYG +IA L + + V+ V+EG+ Sbjct: 469 INLATIESNLNLIRQKLPSQTRLMVMVKALAYGTEDIQIAKFLASCQIDILGVSYVDEGI 528 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 L+ + IF L KI+ + V + L +D Sbjct: 529 ALKRAGVKQAIFALSATPAEITKILRWEIEVGVGDQAFIQALAKEASIQQKEIKVHLHID 588 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERFRTLISH 188 TG +R G +EAL +L +++H ACA+D Q+ +F ++ Sbjct: 589 TGMSRFGCRPEEALPLAQMIQEAPFLKLEGVMTHFACAEDLEQDPFTHQQINKFDAAVAE 648 Query: 189 YKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEAR 241 + + S+ +SS + + R G+++YG + + S ++ ++ +R Sbjct: 649 IQALGISIPWKHAANSSAATRFHLPQYNMVRIGLAVYGLFSSPIVRDSLKLKLALSLLSR 708 Query: 242 IILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I+ I GE +SYG + + IAV IGY DG SG G Sbjct: 709 IVGINVCKQGETISYGRNYTVEKPLQRIAVLPIGYFDGLHRHYSG-----------KGWV 757 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNY 355 + G P++G I MD M DITD + +VGD + IFG D + +D+A+ + + Sbjct: 758 LVHGQKAPMIGNICMDFMMIDITDIPTAQVGDTVLIFGEDEHRNFLSPEDLAMRGESIVH 817 Query: 356 DLLVRIGTRYAKFY 369 +L+ IG R + + Sbjct: 818 ELVTCIGPRIPRIF 831 >gi|124516677|gb|EAY58185.1| Alanine racemase [Leptospirillum rubarum] Length = 406 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 161/392 (41%), Gaps = 40/392 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 RL +DL AL NN + + ++ VVK +AYG G +A GV V Sbjct: 19 SRSRLIVDLDALSNNLEWIRSRLPSSIEILPVVKADAYGHGMLPVAKNFVEKGVPALGVM 78 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EEGV+LR A++ V+ GI P + + L PVI + +L + +S + Sbjct: 79 GLEEGVRLRKAEISAKVIVMGGILPSELEECIAFGLTPVIHN-CELLEAALDLSRKMEVH 137 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+ D G RLG ++ + ++ ++SH + + S Q+ F Sbjct: 138 IHLKFDVGMGRLGFLPEDISWVCDKIGRESSLRIEGVMSHFPEGEKIAE--TSRQIGIFG 195 Query: 184 TLISHYKGIEASLASSSGILL--------------------GPNYHFQLTRPGISLYGGT 223 ++ A I L Y RPGI LYG Sbjct: 196 CMVDELWDRGALCDRPFVIHLANSAAFLSGQYSVADKKNRAWEKYARYWIRPGILLYGIP 255 Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ + +AR+I ++ G +SYGG L+R + + V +GYADG P L Sbjct: 256 VDPLPLPGLKPAMEIQARLISLKTLSEGSRISYGGTLSLSRKTRVGVLGMGYADGLPREL 315 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-- 340 S G P LG++ MDM M D+TD+ + +GD++ + G Sbjct: 316 SNWGWASRM-----------GQKFPFLGRVCMDMVMVDVTDAESPVCLGDWMTVLGNGED 364 Query: 341 --IKLDDVALASGTTNYDLLVRIGTRYAKFYT 370 + ++A + Y+++ R+G R +FY+ Sbjct: 365 SSMSAWEIAGRIRSIPYEIVCRMGNRSPRFYS 396 >gi|221134843|ref|ZP_03561146.1| alanine racemase [Glaciecola sp. HTCC2999] Length = 377 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 165/383 (43%), Gaps = 26/383 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++ID L N+ +N S + + VVKD AYG G IA A +AG Sbjct: 6 MSGIRSAWVEIDHQQLLTNFELINQDSPAHLKKLCVVKDQAYGHGGVVIAKAARDAGYDY 65 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSC 118 V +++E ++LR + I + + + + ++ + + ++ ++ Sbjct: 66 LAVETIDEAIELRDAQIELPILIFGEVSDAEFAACLAYRITCCVNDIDKARRFNALCLAQ 125 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK-LGQLSLIISHLACADDPSSHVNSV 177 G++H +++D+G +R G+ +A+ + L ++SH A +D+ ++ Sbjct: 126 GINHTVHIEIDSGMSRWGVRWSDAIPVIEYIARECDGLVLEGMMSHFAMSDEADKTYANL 185 Query: 178 QLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSH 230 Q RF +I + + ++++ G+L P+ HF + R GI G + + Sbjct: 186 QHSRFVEVIEALEQTDITIPLIHMSNTGGLLDLPHAHFNMIRSGILHLGVYPSLVCKRIE 245 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ +++ +A+I +R+ G+ V YG + IA+ IGY DGYP Sbjct: 246 GLKPIMSVKAQIPALRQLQVGDCVGYGMHFTASTPMQIAILPIGYGDGYPR--------- 296 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 V G I G P++G MD M D++ ++ +GD + + G I D+ Sbjct: 297 ---VRNEGYVLIHGQQCPVVGGNAMDAMMVDVSHLDNVSIGDEVVLMGGQGDEWIDPRDL 353 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 T Y++L R + Y Sbjct: 354 VKWKKTVCYEILTGWRARLPRRY 376 >gi|260497955|ref|ZP_05816072.1| alanine racemase [Fusobacterium sp. 3_1_33] gi|260196516|gb|EEW94046.1| alanine racemase [Fusobacterium sp. 3_1_33] Length = 354 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 163/373 (43%), Gaps = 32/373 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +I L GV F V ++ Sbjct: 2 RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I ++ + + ISS+ Q L++ ++ Sbjct: 62 EEAIELQEAGIKDKILIIGASFEDELIEATKRGVHVAISSMGQ---LQFLVNNKLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA N L L + SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDEAKKVIEFCKNNNL-NLVGVFSHLSDSDGNTVETKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSS-GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + +I+ +++S+ + L R GI +Y T K+ ++ + T ++R Sbjct: 178 KKIINPLNLKYIHISNSAGITNFHNDIVGNLVRMGIGMYSFTGN-KKTPYLKNIFTIKSR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 LLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355 I + I+G I MDMTM I + +++GD + + DI LD++ + Sbjct: 286 INNHRCEIIGNICMDMTMIRIPKEIENSVKIGDEVTVINADI-LDNLN-----IPELCVW 339 Query: 356 DLLVRIGTRYAKF 368 + + IG R + Sbjct: 340 EFMTGIGKRVKRI 352 >gi|121592611|ref|YP_984507.1| alanine racemase [Acidovorax sp. JS42] gi|166919544|sp|A1W2F6|ALR_ACISJ RecName: Full=Alanine racemase gi|120604691|gb|ABM40431.1| alanine racemase [Acidovorax sp. JS42] Length = 365 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 150/374 (40%), Gaps = 28/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+ +N + +AR AVVK NAYG G E++ L F + Sbjct: 3 RPILATIHPAAVHHNLERARRAAPDARVWAVVKANAYGHGIERVFEGLRA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + I +L G+ P ++ L + Q+ + + + V H Sbjct: 61 LAEAERVRALGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDAQIDWLAAHKTQ-VPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + ++H + AD P + Q++ F+ Sbjct: 120 VFLKMNSGMNRLGFTPERYRSAWARLNALPQVDEISCMTHFSDADGPRG--IAHQVQAFQ 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINK----SHPMQTVVT 237 G S++ + G + R GI LYG + +Q +T Sbjct: 178 AATQDLPGERCIANSAALLRHGGDAQVRLDWVRAGIVLYGSAPDHPERRAADWDLQPTMT 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +RII +++ AG+ V YG + I + A GYADGYP G Sbjct: 238 LASRIIGVQQLQAGDTVGYGSRFTAQGPLGIGIVACGYADGYPRHCD-----------TG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G +G+++MDM D+T +G + ++G + +D+VA A GT Sbjct: 287 TPVLVNGVRTRTIGRVSMDMLAVDLTPVPGAGLGAEVTLWGRAANGAVLPIDEVAQAGGT 346 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 IGYELMCALAPRVP 360 >gi|222109415|ref|YP_002551679.1| alanine racemase [Acidovorax ebreus TPSY] gi|254802363|sp|B9MAN2|ALR_DIAST RecName: Full=Alanine racemase gi|221728859|gb|ACM31679.1| alanine racemase [Acidovorax ebreus TPSY] Length = 365 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 151/374 (40%), Gaps = 28/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+ +N + +AR AVVK NAYG G E++ L F + Sbjct: 3 RPILATIHPAAVHHNLERARRAAPDARVWAVVKANAYGHGIERVFEGLRA--ADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + I +L G+ P ++ L + Q+ + + + V H Sbjct: 61 LAEAERVRALGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDAQIDWLAAHKTQ-VPHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + ++H + AD P + Q++ F+ Sbjct: 120 VFLKMNSGMNRLGFTPERYRSAWARLNALPQVDEISCMTHFSDADGPRG--IAHQVQAFQ 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINK----SHPMQTVVT 237 T G S++ + G + R GI LYG + +Q +T Sbjct: 178 TATRDLPGERCIANSAALLRHGGDAQVRLDWVRAGIVLYGSAPDHPERRAADWDLQPTMT 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +RII +++ AG+ V YG + I V A GYADGYP G Sbjct: 238 LASRIIGVQQLQAGDTVGYGSRFTAQGPLGIGVVACGYADGYPRHCD-----------TG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G +G+++MDM D+T +G + ++G + +D+VA A GT Sbjct: 287 TPVLVNGVRTRTIGRVSMDMLAVDLTPVPGAGLGAEVTLWGRAANGAVLPIDEVAQAGGT 346 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 IGYELMCALAPRVP 360 >gi|222081869|ref|YP_002541234.1| alanine racemase [Agrobacterium radiobacter K84] gi|221726548|gb|ACM29637.1| alanine racemase [Agrobacterium radiobacter K84] Length = 377 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 201/365 (55%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL+ N+ ++ A A+ AAVVK +AYGLG +++APALY++G +DFFV E Sbjct: 23 LTIDLVALRRNYETIAAAVAPAKAAAVVKADAYGLGADRVAPALYHSGCRDFFVAQFGEA 82 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 KLR + ARI+VL G+ PG E T ++PV++S+ Q + + P AL Sbjct: 83 EKLRPHLEADARIYVLNGLQPGAEGTCAQTGVVPVLNSMEQYKRWRSTALAQNRVLPAAL 142 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG RLG+ ++ F + + ++ I+SHLA AD+ + N+ QL R + Sbjct: 143 QFDTGMTRLGIPPEDRAAFAAELTHTDVVEIRFIMSHLASADETDNGQNAQQLAEMRKIA 202 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + S A+S G+ LG +YH LTR GI++YGG ++KS+ +Q V+ + ++ R Sbjct: 203 AEFPQFSVSFANSGGVFLGSDYHGVLTRAGIAVYGGALTVDKSNNIQPVIRLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G L+ YGG + +A A GYADG P L G + +G Sbjct: 263 SVPPGTLIGYGGAHAAKVEMRLATLAAGYADGLPRCLGDR-----------GAVYYEGVR 311 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G+++MD D+T + +G +++ GP L+D+A ++GT +Y++L +G R Sbjct: 312 LPIVGRVSMDSITIDVTALPPGTLMLGSLVEVIGPHQTLEDLAKSAGTISYEILTGLGHR 371 Query: 365 YAKFY 369 Y + Y Sbjct: 372 YHRDY 376 >gi|317014351|gb|ADU81787.1| alanine racemase [Helicobacter pylori Gambia94/24] Length = 377 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 165/381 (43%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++++ +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVNTHSLRHNFDAVKSIVPKDACVMAVVKANAYGAGALKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L ++ S+ Q +S++ L Sbjct: 68 ALELRSHFSKTPILILGYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHL 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADANIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLNQKIEFKYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSSEMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +ARI+ I++ GEL+ YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKARIVQIKRVKKGELIGYGKHFYTNEETLVGVLALGYADGLVRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++A Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-EAKEGDEVILFGDKSAKANDASEIAT 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIPYETISTLSKRLERVY 376 >gi|317152532|ref|YP_004120580.1| alanine racemase [Desulfovibrio aespoeensis Aspo-2] gi|316942783|gb|ADU61834.1| alanine racemase [Desulfovibrio aespoeensis Aspo-2] Length = 384 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 159/396 (40%), Gaps = 41/396 (10%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++++I L L N + G V+K +AYG G ++ L G Sbjct: 1 MIDYNKIQVEISLDNLAANVRRFQGVCGT--VIPVIKSDAYGHGLAEVTRTLAAEGATTL 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V V E VKLR RI L G +++ +++ I+++ QL+ + Sbjct: 59 AVGYVNEAVKLRCLGWTGRILALLGPVDEADAAALWEHDILAAIANMDQLSRVAGAARTR 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN-SVQ 178 L+ DTG RLG + + +HLA AD P N ++Q Sbjct: 119 GRLDICLKFDTGMRRLGFRPEGLAALVDALRANPALVPVMASTHLASADVPEHEANVTMQ 178 Query: 179 LERFRTLISH----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-----INKS 229 RF++++ +EA++A+S+G + R GI++YGG + Sbjct: 179 AGRFQSVLDGLEQAGYQVEANIANSAGAMAHKACRMDSMRLGIAMYGGNPFHGTSWEERG 238 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + A ++ + GE VSYG RD +AV +GYAD Y +LS Sbjct: 239 QGLLPTMQVSAPVLHVHTLRQGEGVSYGWTHVAGRDCEVAVVGVGYADNYSRSLSSR--- 295 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT------------DSLSIEVGDYIQIF 337 G IKGY VPILG++ M MT+ D+T D + GD + Sbjct: 296 --------GFMNIKGYRVPILGRVCMQMTVVDVTGLMGEGLAGELGDGPGVRPGDQAWLL 347 Query: 338 G----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G I +D+A GT Y+ +G + Y Sbjct: 348 GGPAPGTITPEDLAGWWGTIPYEAFCLLGM-NPRSY 382 >gi|330952099|gb|EGH52359.1| alanine racemase [Pseudomonas syringae Cit 7] Length = 308 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 135/317 (42%), Gaps = 16/317 (5%) Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 F V +EE ++LR +A + +L G E + + + + + Sbjct: 3 ADGFAVACIEEALELRTAGIRAPVLLLEGFFEADELALIVEHDLWTVVHAVWQLEAIEQA 62 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G L++DTG +R+GL E +++SH + AD+ +S + Sbjct: 63 RLGKPITVWLKLDTGMHRVGLHPHEYQAAYQRLLATGKVARIVLMSHFSRADELNSACSD 122 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQ 233 QL F T E SL +S +L P +RPGI LYG T + +Q Sbjct: 123 EQLAVFETF-RKGLAAETSLKTSPAVLGWPQIPSDWSRPGIMLYGATPFDQVHPLADRLQ 181 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+T E++II +R+ GE V YG R I V A+GYADGYP Sbjct: 182 PVMTLESKIISVRELPVGEPVGYGATFVCDRPLRIGVVAMGYADGYPRHA---------- 231 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G I G +LG+++MDM D+TD +G ++++G + +VA + T Sbjct: 232 -PTGTPVQIDGQPSRLLGRVSMDMLSVDLTDVPQAGLGSRVELWGKQVLASEVAQRAETI 290 Query: 354 NYDLLVRIGTRYAKFYT 370 Y++ + R + Y+ Sbjct: 291 PYEIFCNL-RRVPRIYS 306 >gi|183602553|ref|ZP_02963918.1| alanine racemase [Bifidobacterium animalis subsp. lactis HN019] gi|219683598|ref|YP_002469981.1| alanine racemase [Bifidobacterium animalis subsp. lactis AD011] gi|183218194|gb|EDT88840.1| alanine racemase [Bifidobacterium animalis subsp. lactis HN019] gi|219621248|gb|ACL29405.1| alanine racemase [Bifidobacterium animalis subsp. lactis AD011] Length = 452 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 101/405 (24%), Positives = 165/405 (40%), Gaps = 42/405 (10%) Query: 6 FLRLKIDLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +DL AL++N + ++ G VVK +AYG G A A G Sbjct: 28 PAQVIVDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLG 87 Query: 62 VTSVEEGVKLRLYTP---QARIFVLYGIH---PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + LR +AR+ P + I D +L + Q Sbjct: 88 VAQAREALALRNAGIGVDRARVLTWVNNPLHAPYDDLIAADVDLSVATLTAIQ-KIAEAA 146 Query: 116 MSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDP-- 170 + G ++VDTGF R G + A+D ++ + ++ SHLA AD P Sbjct: 147 RAVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAPAV 206 Query: 171 --SSHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT 223 Q+ F S H +GIE LA+++ L P H+ L RPG++LYG Sbjct: 207 GEFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYE 266 Query: 224 DKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 P + +T +A++ ++ AGE +SYG + A+ +GYADG Sbjct: 267 ADPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYADGI 326 Query: 280 PLTLSGLDSEHSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDITDSLS---IEVG 331 + SG + S V G + G + G++ MD + D+ + +G Sbjct: 327 HRSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVHIG 386 Query: 332 DYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 387 DTVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLY 431 >gi|160936433|ref|ZP_02083802.1| hypothetical protein CLOBOL_01325 [Clostridium bolteae ATCC BAA-613] gi|158440716|gb|EDP18454.1| hypothetical protein CLOBOL_01325 [Clostridium bolteae ATCC BAA-613] Length = 374 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 154/380 (40%), Gaps = 27/380 (7%) Query: 6 FLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++ IDL + N+ + + L AVVK +AYGLG IA L AG F VT Sbjct: 3 YTQMDIDLDVIAENYKKVSDRLPEETGIIAVVKADAYGLGAVPIAKKLEKAGCPMFAVTF 62 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHP 123 +EE VKLR +A I V+ + I LI I+ S + S P Sbjct: 63 MEEAVKLREAGIKAPILVMMPAESKELLIAGKHKLIITITDYEMAKQISDELVKQSYSLP 122 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNS----FNKKLGQLSLIISHLACADDPSSHVN---S 176 L+VD G +R+G+ L++ L+ + SHL A ++ + Sbjct: 123 AHLKVDCGLSRMGIVLKDRLEEAAEEAAKIHALPNLNTEAVFSHLTAAGTEGAYAALDLA 182 Query: 177 VQLERF---RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 Q F + L I+ L SS + P R G LYG + ++ Sbjct: 183 EQQRFFELIKMLKKKNISIKTHLMSSDPYIWYPQTPGDYIRVGSILYGICPERYSCCGIK 242 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ I+ I+ VSYG + R + IAV +G+ADG LS Sbjct: 243 NCMSMNTYIVQIKWIPRDTEVSYGPLYRTVRRTKIAVVPVGFADGIRRALSN-------- 294 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 G+ I G VPI+GKI D T+ D+TD ++VGD + IFG + D A Sbjct: 295 ---KGEMLIHGKRVPIIGKICCDHTILDVTDIEEVKVGDEVTIFGRNGEESQTAGDYAEL 351 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + + V R + Y Sbjct: 352 CNASAPETTVIFSARIPRNY 371 >gi|158423689|ref|YP_001524981.1| alanine racemase [Azorhizobium caulinodans ORS 571] gi|158330578|dbj|BAF88063.1| alanine racemase [Azorhizobium caulinodans ORS 571] Length = 393 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 15/365 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + + A AAVVK +AYGLG ++ LY G + FFV E Sbjct: 39 LTIDLGALARNYRKLKETAAPAAVAAVVKADAYGLGAGLVSERLYAEGCRHFFVAHFVEA 98 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYAL 126 V+LR P +A + VL G+ PG+E+ D + PVI+ + Q ++ G A+ Sbjct: 99 VRLRPTLPVEATLLVLNGLMPGEEEHAADLGVTPVINCLEQAAAWATEAKVRGTRLKAAI 158 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG +RLGLS + +S + + L++SHLACAD P++ ++ QL + + Sbjct: 159 QIDTGMSRLGLSEADVASLRADSLFAEAVEPILLMSHLACADTPAAPASAGQLAVMQRVA 218 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 +H+ G+ SLA+S G+ LG +HF L RPGI++YGG + ++PM+ VV + +I R Sbjct: 219 AHFPGLPVSLANSGGVFLGGAFHFALARPGIAVYGGAPVSDVANPMEPVVRIDIPVIQAR 278 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AG V YGG T ++ +A + GYADG P LS G + +G Sbjct: 279 TVPAGTAVGYGGTFVTTGETRLATLSGGYADGIPRHLSSS-----------GALYYQGVR 327 Query: 307 VPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI G+++MD D + + +G ++ GP L+ VA +GT +Y++L R+G R Sbjct: 328 LPIAGRVSMDSLTVDASALPEGGLRLGTMVEFVGPSQSLEQVAADAGTISYEILTRLGRR 387 Query: 365 YAKFY 369 Y + Y Sbjct: 388 YRRVY 392 >gi|269955481|ref|YP_003325270.1| alanine racemase [Xylanimonas cellulosilytica DSM 15894] gi|269304162|gb|ACZ29712.1| alanine racemase [Xylanimonas cellulosilytica DSM 15894] Length = 441 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 165/398 (41%), Gaps = 34/398 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +DL A+++N ++ A + ++ AVVK +AYG G A A G V Sbjct: 12 PARAVVDLEAVRDNVRALRAHAPSSALMAVVKADAYGHGLVPTAWAALAGGATWLGVAQA 71 Query: 66 EEGVKLRLYTP---QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 E V LR ARI + ++ +++ L + G Sbjct: 72 AEAVALRAAGIGPGDARILTWLHSPGVDFDPLVAADVDVSVAAPWALDGVAAAARATGRV 131 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQ 178 L+VDTG R G++ + + + + +HLA AD+P + Q Sbjct: 132 ARVHLKVDTGLGRNGITPADLPAAAARAAALVAEGAIHVVGVWTHLAYADEPGHPTIAAQ 191 Query: 179 LERFRTLIS--HYKGIEASLA---SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KS 229 + GIE L +S+ L P H+ L RPGIS+YG + S Sbjct: 192 RVVLDDAVRTVEAAGIEVELRHAANSAATLTAPALHYDLVRPGISVYGFSPVPGVATASS 251 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ +T +AR+ ++ AG+ VSY + T+ + + V +GYADG P SG D Sbjct: 252 FGLRPAMTLQARLATVKNVEAGQGVSYAHRYVTTQATQLGVVPLGYADGIPRHASGGDDG 311 Query: 290 HSPSVFLGGKGFI---------KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 V++GG G +V + G++ MD + D+ + + GD + +FG Sbjct: 312 PGGPVYVGGPAGAGIGPAGDGDGGRVVRVAGRVCMDQVVLDLGPYATEQPGDVVTLFGST 371 Query: 341 ---------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +D A A+GT +Y+++ RI R + Y Sbjct: 372 DGLAHSASVPSAEDWAAAAGTISYEIVTRIAPRIPRVY 409 >gi|283783501|ref|YP_003374255.1| alanine racemase [Gardnerella vaginalis 409-05] gi|283441514|gb|ADB13980.1| alanine racemase [Gardnerella vaginalis 409-05] Length = 459 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 166/406 (40%), Gaps = 44/406 (10%) Query: 8 RLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ +DL AL++N ++ A VVK YG G A A G Sbjct: 33 QVIVDLKALRDNMRTLVARVSQDLQPGQNAPEVMGVVKAGGYGHGLIPSALAALAGGATW 92 Query: 60 FFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 E ++LR +R +L + D + SV + + Sbjct: 93 LGTAQPYEALRLRAVGIDSSRCHILTWLTSAPTTRFADLITADIDISVGSIDSLDAVAFA 152 Query: 119 ----GVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171 G ++VDTGF R G + + AL+ ++ + ++ SHLA AD P Sbjct: 153 ARKLGKPARVHVKVDTGFGRNGFTPEGFCAALEKLQQYSSEGVIEVIGQWSHLAVADSPD 212 Query: 172 SH----VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGG 222 Q+++F K LA+++ L P F+L RPGI LYG Sbjct: 213 VPEFVDATDRQIQQFHEFTKRMKEASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 272 Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 +++ +Q +T +A++ ++ G +SYG ++ A+ +GYADG Sbjct: 273 EPDPAMGNSQTYGLQPAMTLQAQLGTVKTVEEGHGISYGRTYLTPNNTSTAIVPLGYADG 332 Query: 279 YPLTLSGLDSEHSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDI-TDSLSIEV-- 330 + SG D + + V GG + G V + G++ MD + D+ D+ + V Sbjct: 333 ILRSASGFDMQGARHVNKPGGPVRVETKNGARIVNVSGRVCMDQFIVDLKGDASELGVLE 392 Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G+ + +FGP + DD A A+GT +Y+++ IG R + Y Sbjct: 393 GNTVTLFGPGRGLEFAEPTADDWAEAAGTISYEIMTGIGPRVPRLY 438 >gi|294791096|ref|ZP_06756254.1| alanine racemase [Scardovia inopinata F0304] gi|294458993|gb|EFG27346.1| alanine racemase [Scardovia inopinata F0304] Length = 460 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 166/414 (40%), Gaps = 48/414 (11%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS------------GNARTAAVVKDNAYGLGCEKIAPA 51 + +DL AL++N + L+ G A+ VVK +AYG G A A Sbjct: 26 QYPAQAIVDLAALRDNMRHLTDLADEAAKSGKNPAQGPAQVMGVVKADAYGHGLIPTALA 85 Query: 52 LYNAGVQDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSV 106 G E + LR ++ G + +K+I I + S Sbjct: 86 ALAGGATWLGTAQSREALLLRKLGIGPDRARILTWLYNGKYDPFDKLIGHDIDIALGSVQ 145 Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISH 163 + + G ++VDTGF R G + +EAL+ ++ L + + SH Sbjct: 146 GIEAVAAAARTAGKKARVHIKVDTGFGRNGFTPEEFEEALNLLKEKVHENLLDVVGVWSH 205 Query: 164 LACADDPSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTR 214 LA AD+P+ Q+ F + LA+++ L P H++L R Sbjct: 206 LAVADNPADPECRAATEEQIASFSRFVDRMDNAGLHPSLRHLANTAATLTRPQIHYELVR 265 Query: 215 PGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270 PG+ LYG ++ +T +A++ ++ AG +SYG T+ + A Sbjct: 266 PGVGLYGYEPDPAMGTASDWGLKPAMTVQAQLGTVKNLPAGHSISYGRTYMTTQATSTAD 325 Query: 271 AAIGYADGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITD- 324 +GYADG + SG + S V G I +V I G++ MD + D+ Sbjct: 326 LPVGYADGIHRSASGFNRAGSLGVDHPGAPVRIMTSQGPKIVHISGRVCMDQCILDLQGF 385 Query: 325 --SLSIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 L + GD +++FGP + DD A A+GT +Y++ + R + Y Sbjct: 386 ASDLGVCEGDTVELFGPGRGEQFGEPTADDWARAAGTISYEIFTCLRNRIPRLY 439 >gi|332530410|ref|ZP_08406354.1| alanine racemase [Hylemonella gracilis ATCC 19624] gi|332040122|gb|EGI76504.1| alanine racemase [Hylemonella gracilis ATCC 19624] Length = 377 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 157/387 (40%), Gaps = 42/387 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL++N A + +A+ AVVK NAYG G E++ L G F + Sbjct: 3 RPIQALIHTGALRHNLARARAAAPDAKVWAVVKANAYGHGIERVYEGLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + I +L G+ P ++ L V+ Q+ + + + H Sbjct: 61 LGEAERVRALGWRGPILLLEGVFDPRDLELCSRLGLWHVVHETRQIDWLAMHKTHA-PHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + + +I+H + AD P + QL F Sbjct: 120 VFLKMNSGMNRLGFRPEAFRAAWARLDALPQVEEITLITHFSDADGPRGI--ASQLALFN 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH-----------FQLTRPGISLYGGTDKINKSHPM 232 G E SLA+S+ L RPGI++YG + Sbjct: 178 ATTQDLPG-ERSLANSAATLRHMGAQGRTSSDAEGLRSDWVRPGIAVYGSAPDYPEHDAA 236 Query: 233 QT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 +T +RII +++ AG+ V YG + + V A GYADGY Sbjct: 237 HWDLHPTMTLRSRIIGVQQLQAGDTVGYGSAFTAQQPMRVGVVACGYADGYMR------- 289 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS----IEVGDYIQIFGPD---- 340 G + G ++G+++MDM D+ +VG + ++G Sbjct: 290 ----VAPTGTPVLVDGVRTRLVGRVSMDMLTVDLEPVRQAGLAADVGSEVTLWGQAGNGA 345 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYA 366 + +D+VA A+GT +Y+L+ + R Sbjct: 346 VLDIDEVARAAGTLSYELMCALALRVP 372 >gi|314983018|gb|EFT27110.1| alanine racemase [Propionibacterium acnes HL110PA3] Length = 352 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 143/358 (39%), Gaps = 24/358 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81 M +G+ + VK +AYG G +++ + V +V EG +L I Sbjct: 1 MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIP 60 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140 L P + + + L SK GV+ + VD+G R+GL + Sbjct: 61 KLSPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120 Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLIS----HYKGIEAS 195 + T + K ++ + +HL +D P +++ F T +S H Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180 Query: 196 LASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGEL 253 ++SG +LG + + R GI YG + + ++ + + ++ G+ Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWISHVTFVKTVSVGDT 240 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 + YG + + IA +GYADG LS G I+G + PI+G+I Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGYVLIRGSVHPIVGRI 289 Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 MD M D+ ++ VGD + + G + DD+A GT +Y++ I R + Sbjct: 290 CMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISKRVNR 347 >gi|163857474|ref|YP_001631772.1| catabolic alanine racemase [Bordetella petrii DSM 12804] gi|226711028|sp|A9IU63|ALR_BORPD RecName: Full=Alanine racemase gi|163261202|emb|CAP43504.1| catabolic alanine racemase [Bordetella petrii] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 151/385 (39%), Gaps = 39/385 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNAL---------SGNARTAAVVKDNAYGLGCEKIAPALYNA 55 + I L AL +N + AV+K NAYG G E A + Sbjct: 3 RPIHASISLAALAHNLDVVRRHLDQAAQAAGGAPPSIWAVIKANAYGHGIE--AAVAGFS 60 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 Q + + E V+ R I +L G P +I +L + + QL ++ Sbjct: 61 AAQGLAMLDLAEAVRCREAGWGGPILLLEGFFQPADLDLIDRYHLSATVHTREQLDMLAQ 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPS 171 L++++G NRLG + + + ++H ACAD Sbjct: 121 -ARLSRRVDIMLKLNSGMNRLGFDPDAYGSAHARALQLREQGVVGAVGRMTHFACAD--G 177 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN------YHFQLTRPGISLYGGTDK 225 + + QL F+++ S+ +S+ L P RPGI LYG + Sbjct: 178 TPGVAGQLRVFQSVTQGLADGPVSVCNSAATLRYPEIAVAHGAQAHWVRPGICLYGASPF 237 Query: 226 INKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282 + ++ ++ ++II ++ AG V YG + R + V A GYADGYP Sbjct: 238 ADADAASFGLRPAMSLRSQIIGVQDLPAGAEVGYGATFRAERPMRVGVVACGYADGYPRH 297 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341 G + G ++G+++MDM M D+ + +G + ++G D Sbjct: 298 AG-----------TGTPVVVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVSLWGQDGP 346 Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366 +D+VA A+GT Y+LL + R Sbjct: 347 SVDEVAQAAGTIGYELLCALAPRVP 371 >gi|332704045|ref|ZP_08424133.1| Alanine racemase [Desulfovibrio africanus str. Walvis Bay] gi|332554194|gb|EGJ51238.1| Alanine racemase [Desulfovibrio africanus str. Walvis Bay] Length = 379 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 114/388 (29%), Positives = 171/388 (44%), Gaps = 35/388 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + L +++DL + +N+ M + + AR V+K +AYG G +A AL AG F Sbjct: 3 ITYNMLEVQVDLKRIVDNYRFMRSRA--ARLMPVIKADAYGHGLLPVAKALAAAGADAFC 60 Query: 62 VTSVEEGVKLRL-----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V SV E V LR + + + + + V Sbjct: 61 VGSVGEAVTLRRERKPDSGCRVVSLLGPMDREDYAEAVSHEVTLLVGRHEQLELLQVAAS 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVN 175 S G P AL+ DTG +RLG S + +L L+ SHLA AD+ S Sbjct: 121 SAGRMAPVALKFDTGMSRLGFSEADVPRLIQTLTTSPNLRLELVTSHLATADEDSGVDYV 180 Query: 176 SVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH- 230 Q ERFR + + +A+LA+S+GIL P HF L RPGI+LYG + +H Sbjct: 181 LAQAERFRAITAKLSAAGLRFQANLANSAGILAYPELHFDLQRPGIALYGSNPFLGTNHE 240 Query: 231 ----PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 P++ ++ RI+ + G +SYG RD +A+ A GYADGY LS Sbjct: 241 ELGRPLKQAMSVTTRILDVHDLPRGGTISYGRTYTAPRDMRVAIMAAGYADGYSRGLSN- 299 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 G+ +KG PILG++ M +T DIT + GD + + G I Sbjct: 300 ----------KGQVCLKGSRAPILGRVCMQLTAVDITGREDVHPGDTVHLLGGSGRGYIS 349 Query: 343 LDDVALASGTTNYDLLVRIG-TRYAKFY 369 ++++A GT +Y+ +G R + Y Sbjct: 350 VEELAGWWGTISYESFCILGLNR--RVY 375 >gi|323699155|ref|ZP_08111067.1| alanine racemase [Desulfovibrio sp. ND132] gi|323459087|gb|EGB14952.1| alanine racemase [Desulfovibrio desulfuricans ND132] Length = 374 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 104/388 (26%), Positives = 160/388 (41%), Gaps = 34/388 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M LR++I L L++N+ + + R V+K +AYG G ++A AL G F Sbjct: 1 MIDYNKLRVRIHLDNLRHNYRLFTKI--HDRVIPVIKSDAYGHGLVEVASALEKDGADTF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI-PVISSVPQLTFYSKLMSCG 119 V V E KLR RI L G ++ T+ I IS QL Sbjct: 59 AVGFVHEAAKLRRAGCDKRILALLGPISDEDIQSLWTDRILTPISHWAQLRRVLAASEQN 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQ 178 L+ DTG RLG +EA + + SHLA AD+P ++Q Sbjct: 119 GPLDIGLKFDTGMRRLGFLPEEAGEVA-ALLKGGNVTPVMATSHLARADEPGREKDVALQ 177 Query: 179 LERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKS 229 RF+ + G +EA+LA+S+G ++ N R GI LYG + Sbjct: 178 ARRFQAALDGLAGAGFVVEANLANSAGGMVHENCRMDSMRLGIGLYGCDPLEGAGEERLP 237 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + A ++ + GE +SYG RD+++A+ +GYAD Y LS Sbjct: 238 GKLLPAMEVTAPVMQVHPLKRGESISYGWTFTAERDAMVAIVGVGYADNYSRALSNR--- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS----LSIEVGDYIQIFG----PDI 341 G+ + G VPI G++ M MT D+T+ + + GD + G + Sbjct: 295 --------GEMVLHGRRVPIRGRVCMQMTAVDVTELMGEGIEVLPGDEAWLLGGPGEHPV 346 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +D+A T Y+ +G + Y Sbjct: 347 TPEDLAEWGNTITYEAFCLLGQ-NRREY 373 >gi|283768393|ref|ZP_06341305.1| alanine racemase [Bulleidia extructa W1219] gi|283104785|gb|EFC06157.1| alanine racemase [Bulleidia extructa W1219] Length = 362 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 167/371 (45%), Gaps = 25/371 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH +IDL +K+N + + A++K NAYG G +++ L G+ Sbjct: 1 MHRQ--TWFEIDLEKIKHNVQQVQSF-QQKEVMAILKANAYGCGDIQLSKQLEMIGIHFI 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V+SV+E + LR + Q ++ VL G + + + ++ S + +++ G+ Sbjct: 58 GVSSVDEALVLRKHGFQGKLLVLGGTNIEDLETLIQNHITVTAYSEEWIEKFTQHDLTGL 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 S L++DTG NR+G + + + Q+ I +H +D + + Q + Sbjct: 118 SI--HLKIDTGMNRIGFDNADEAKKALSHLLDQNAQVEGIFTHYYQSDQDEKN-TARQFK 174 Query: 181 RFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 F+ ++++ + + +S L + + R GI+LYG + +Q ++ Sbjct: 175 DFKKIVTYLNHSFSYIHADNSDASLYFQDNFTNMVRLGIALYGYSTH---HTGLQEALSL 231 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I+I+ GE + YG + + +IA IGYADG G Sbjct: 232 YTKPIMIKVVHPGETIGYGATYRAQEEEIIATLPIGYADGLLRINQGR------------ 279 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 K ++ G I+G+I MD M + +S+E D ++IFG I L+ +AL + T +Y+++ Sbjct: 280 KVYVNGQYGTIVGRICMDQCMVKLEQKISLE--DTVEIFGSHISLNQMALETNTISYEII 337 Query: 359 VRIGTRYAKFY 369 I R + Y Sbjct: 338 SLITPRVTRVY 348 >gi|294677111|ref|YP_003577726.1| alanine racemase [Rhodobacter capsulatus SB 1003] gi|294475931|gb|ADE85319.1| alanine racemase [Rhodobacter capsulatus SB 1003] Length = 349 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 188/363 (51%), Gaps = 26/363 (7%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL A+ NW +++A++ T AVVK ++YGLG ++A L AG + FFV + EE Sbjct: 6 LRIDLDAVLANWRALDAMTSAATETGAVVKADSYGLGAARVARVLARAGARKFFVAAAEE 65 Query: 68 GVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G +R + FV G G ++I D L P+++SV Q + + + + Sbjct: 66 GAAVRQALGEGPEIFVFSGHMAGDTEMIGDLGLTPMLNSVEQ---VKRHVDALPGAAFGV 122 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG NRLGL + S L++SHLAC+D+P +N++QL+ FR + Sbjct: 123 QLDTGMNRLGLEPADWAAV---SAELIAAGPKLVMSHLACSDEPEHPMNAMQLKNFRAMT 179 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 G++ +L+++ GILLGP+YHF +TRPGI LYGG + VV ++ IR Sbjct: 180 DG-LGLKRALSATGGILLGPDYHFDVTRPGIGLYGGLPFETA----RAVVRLSLPVVQIR 234 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 GE V Y R+S IA A GYADG SG + + Sbjct: 235 TVAPGETVGYANSWTAARESRIATVAAGYADGLSRRFSGKATL-----------WAGDTP 283 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 P++G+++MD+ D+TD + ++I GP +D +A +GT Y++L +G RY Sbjct: 284 CPLVGRVSMDLITVDVTDLPEVP--QSLEILGPHQGVDALAEVAGTIGYEILTALGQRYQ 341 Query: 367 KFY 369 + Y Sbjct: 342 RSY 344 >gi|289178366|gb|ADC85612.1| Alanine racemase [Bifidobacterium animalis subsp. lactis BB-12] Length = 476 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 101/405 (24%), Positives = 165/405 (40%), Gaps = 42/405 (10%) Query: 6 FLRLKIDLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +DL AL++N + ++ G VVK +AYG G A A G Sbjct: 52 PAQVIVDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLG 111 Query: 62 VTSVEEGVKLRLYTP---QARIFVLYGIH---PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + LR +AR+ P + I D +L + Q Sbjct: 112 VAQAREALALRNAGIGVDRARVLTWVNNPLHAPYDDLIAADVDLSVATLTAIQ-KIAEAA 170 Query: 116 MSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDP-- 170 + G ++VDTGF R G + A+D ++ + ++ SHLA AD P Sbjct: 171 RAVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAPAV 230 Query: 171 --SSHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT 223 Q+ F S H +GIE LA+++ L P H+ L RPG++LYG Sbjct: 231 GEFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYE 290 Query: 224 DKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 P + +T +A++ ++ AGE +SYG + A+ +GYADG Sbjct: 291 ADPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYADGI 350 Query: 280 PLTLSGLDSEHSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDITDSLS---IEVG 331 + SG + S V G + G + G++ MD + D+ + +G Sbjct: 351 HRSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVHIG 410 Query: 332 DYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 411 DTVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLY 455 >gi|241190627|ref|YP_002968021.1| alanine racemase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196033|ref|YP_002969588.1| alanine racemase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|240249019|gb|ACS45959.1| alanine racemase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250587|gb|ACS47526.1| alanine racemase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793616|gb|ADG33151.1| alanine racemase [Bifidobacterium animalis subsp. lactis V9] Length = 455 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 101/405 (24%), Positives = 165/405 (40%), Gaps = 42/405 (10%) Query: 6 FLRLKIDLTALKNNWHSMNALS----GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +DL AL++N + ++ G VVK +AYG G A A G Sbjct: 31 PAQVIVDLAALRDNMRHLVDITNREGGPTEVMGVVKADAYGHGLVPSALAALAGGATWLG 90 Query: 62 VTSVEEGVKLRLYTP---QARIFVLYGIH---PGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + LR +AR+ P + I D +L + Q Sbjct: 91 VAQAREALALRNAGIGVDRARVLTWVNNPLHAPYDDLIAADVDLSVATLTAIQ-KIAEAA 149 Query: 116 MSCGVSHPYALQVDTGFNRLGL---SLQEALDFTHNSFNKKLGQLSLIISHLACADDP-- 170 + G ++VDTGF R G + A+D ++ + ++ SHLA AD P Sbjct: 150 RAVGKPARVHIKVDTGFGRNGFTLAQIDSAIDLLLPLVDEGVFEIVGQWSHLAVADAPAV 209 Query: 171 --SSHVNSVQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGT 223 Q+ F S H +GIE LA+++ L P H+ L RPG++LYG Sbjct: 210 GEFVEKTDEQIRVFEEFTSRLHARGIEPRIRHLANTAATLSRPEIHYDLVRPGVALYGYE 269 Query: 224 DKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 P + +T +A++ ++ AGE +SYG + A+ +GYADG Sbjct: 270 ADPAMGTPSKYELRPAMTLQAQLSSVKNVGAGEGLSYGRVYVTDEPTSAAIVPVGYADGI 329 Query: 280 PLTLSGLDSEHSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDITDSLS---IEVG 331 + SG + S V G + G + G++ MD + D+ + +G Sbjct: 330 HRSASGFNEAGSKHVNKPGAPVRVMTRDGARIFHVSGRVCMDQFILDLHGDAENMGVHIG 389 Query: 332 DYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 390 DTVELFGPGRGEDYLEPTADDWARAADTISYEIFTCLRNRVPRLY 434 >gi|257468004|ref|ZP_05632100.1| alanine racemase, biosynthetic [Fusobacterium ulcerans ATCC 49185] gi|317062290|ref|ZP_07926775.1| alanine racemase [Fusobacterium ulcerans ATCC 49185] gi|313687966|gb|EFS24801.1| alanine racemase [Fusobacterium ulcerans ATCC 49185] Length = 364 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 158/370 (42%), Gaps = 24/370 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID+ LK N + + L V+K N+YG G + A L GV+ F V S+ Sbjct: 2 RAWLEIDMDNLKYNLNKIKELVQGTNVLGVIKANSYGFGAIETAKELSKNGVEIFGVASL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++LR + I +L + + +I + N ISS+ Q+ F S ++ Sbjct: 62 EEAMELREGGIEEEILILGSLFNDEIEIAAEKNFQITISSMRQIEFLE---SNKINAEIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERF 182 +++DTG RLG + ++ K + I SHL+ AD S Q+ +F Sbjct: 119 IKIDTGMGRLGFTPEKGKKAVDYCIEK-GIKAVGIYSHLSDADGMSDEAYNYTKEQINKF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + + +S GIL + + L R GI +YG + V T + R Sbjct: 178 KIFEEYKNIKYIHILNSGGILRFNDGFKGNLVRAGICMYGMLGNERMP-GFKRVFTMKTR 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I+ IR +SYG KL A AIGYADG S Sbjct: 237 ILFIRTLEEDSYISYGRTVKLKEGETFATLAIGYADGMKKEFSN-----------KTYAL 285 Query: 302 IKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I+G PI+G+I MDM M I + I +G + DI ++++ + + +D+L Sbjct: 286 IEGEKCPIVGEICMDMCMVKIPESILKKINIGTEAIVIRDDI-IEEI-NSVHKSTWDILT 343 Query: 360 RIGTRYAKFY 369 IG R + Y Sbjct: 344 GIGRRVYRVY 353 >gi|19703748|ref|NP_603310.1| alanine racemase, biosynthetic [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|23813647|sp|Q8RGA2|ALR_FUSNN RecName: Full=Alanine racemase gi|19713882|gb|AAL94609.1| Alanine racemase, biosynthetic [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 354 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 164/373 (43%), Gaps = 32/373 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +IA L V+ F V ++ Sbjct: 2 RTWIEIDKENLKYNVLKLKEIANNKEILGVVKANAYGLGSIEIAKILKEVEVKLFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ Q L+S ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELVEATKRGVHVAISSMGQ---LQFLVSKNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + +A N L L I SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDDAEKVIEYCKNNNL-NLVGIFSHLSDSDGNTIETKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSS-GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + +++ +++S+ + L R GI +Y T K+ ++ + T +++ Sbjct: 178 KKIVNSLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTPYLKNIFTIKSK 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I+ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 ILFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355 I + I+G I MDMTM + + I++GD + + DI LD++ + Sbjct: 286 INNHRCEIIGNICMDMTMIRVPKEIENSIKIGDEVTVINADI-LDNLN-----IPELCVW 339 Query: 356 DLLVRIGTRYAKF 368 + + IG R + Sbjct: 340 EFMTGIGRRVKRI 352 >gi|304319746|ref|YP_003853389.1| alanine racemase region protein [Parvularcula bermudensis HTCC2503] gi|303298649|gb|ADM08248.1| alanine racemase region protein [Parvularcula bermudensis HTCC2503] Length = 382 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 118/375 (31%), Positives = 171/375 (45%), Gaps = 28/375 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTS 64 L +DL AL N+ + +G A VVK NAYGLG IA LY G + FF + Sbjct: 8 PTLTVDLGALGRNYDELKRRTGGTSAVAPVVKANAYGLGMHAIARTLYREKGARLFFTAT 67 Query: 65 VEEGVKL-----RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 E + L R + + G + +P++S + + G Sbjct: 68 CREALALLVDGQRFFDDAPPRVYVLNGFDGDRALQEKVGYLPILSDWQDVGDW----VAG 123 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 P + VD G NRLG+S Q+A + LI+ HL+ + DP++ N +Q Sbjct: 124 GGGPCGISVDIGMNRLGMSFQDAGGL-PQDTRLNPDDVQLIMMHLSHSGDPTAPENELQA 182 Query: 180 ERF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 E+F L Y + SL++S GILLG Q+ R G +LYGG + V Sbjct: 183 EKFFTSGMMLARLYPKAQFSLSNSGGILLGLAPEQQIVRAGYALYGGAPNGLPGQGLDQV 242 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 T EA ++ +R +GE V Y G + R + +AV GYADG LS Sbjct: 243 TTFEASVLQVRDIGSGESVGYNGTWRAERPTRLAVLGAGYADGIQRALSNR--------- 293 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPDIKLDDVALASGTTN 354 G ++ G + PI G ++MD+ DITD+ + GD +I+G I LD VA +GT Sbjct: 294 --GAVWLGGGLCPIRGAVSMDLVTVDITDAPSPVTRGDKAEIWGAQIDLDLVARQAGTIG 351 Query: 355 YDLLVRIGTRYAKFY 369 YDLL +G+R + Y Sbjct: 352 YDLLTGVGSRVERIY 366 >gi|218886445|ref|YP_002435766.1| alanine racemase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|254802361|sp|B8DRL1|ALR_DESVM RecName: Full=Alanine racemase gi|218757399|gb|ACL08298.1| alanine racemase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 372 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 110/375 (29%), Positives = 171/375 (45%), Gaps = 29/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +++ L AL+ N+ ++ +S A V+K +AYG G +A L AG F +V E Sbjct: 10 VRVRLGALRRNFETLRRMSPAA--MPVIKSDAYGHGLLPVARTLEAAGADAFAAGTVGEC 67 Query: 69 VKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +LR RI L G + +++P + S QL + + G AL+ Sbjct: 68 AQLRDGGIPGRIVALLGATDAADAECCVARSIVPAVYSADQLEMLAGRAAPGQQVDIALK 127 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186 DTG RLG S + + + + L++SHLA +DDP S Q E F ++ Sbjct: 128 FDTGMARLGFSEADLPALLDRLHARPMLRPVLVMSHLAVSDDPSRSDFTRQQGEAFGRIL 187 Query: 187 ----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-----KINKSHPMQTVVT 237 + + + SLA+S+ +L P HF + RPGI+LYG + + +Q + Sbjct: 188 AGVRADWPAAQGSLANSAALLAHPELHFDVQRPGIALYGANPLRGTAQEHLGDGLQPAMD 247 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A I+ + AG +SYG RD +A+ A GYAD Y LSG Sbjct: 248 VAAPILQVHPLPAGRSISYGRTFTAPRDMTVAIVATGYADAYSRGLSG-----------K 296 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF---GPDIKLDDVALASGTTN 354 G + G VPILG++ M MT D+TD + GD + G + D++A GT + Sbjct: 297 GAMTVHGRRVPILGRVCMQMTAVDVTDVPGVAAGDDAYLLGGPGEALTPDELADLWGTIS 356 Query: 355 YDLLVRIG--TRYAK 367 Y++L +G R + Sbjct: 357 YEVLCLLGMNPRTHR 371 >gi|298252575|ref|ZP_06976369.1| alanine racemase [Gardnerella vaginalis 5-1] gi|297532939|gb|EFH71823.1| alanine racemase [Gardnerella vaginalis 5-1] Length = 442 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 166/406 (40%), Gaps = 44/406 (10%) Query: 8 RLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ +DL AL++N ++ A VVK YG G A A G Sbjct: 16 QVIVDLKALRDNMRTLVARVSQDLQPGQNAPEVMGVVKAGGYGHGLIPSALAALAGGATW 75 Query: 60 FFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 E ++LR +R +L + D + SV + + Sbjct: 76 LGTAQPYEALRLRAVGIDSSRCHILTWLTSAPTTRFADLITADIDISVGSIDSLDAVAFA 135 Query: 119 ----GVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPS 171 G ++VDTGF R G + + AL+ ++ + ++ SHLA AD P Sbjct: 136 ARKLGKPARVHVKVDTGFGRNGFTPEGFCAALEKLQQYSSEGVIEVIGQWSHLAVADSPD 195 Query: 172 SH----VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGG 222 Q+++F K LA+++ L P F+L RPGI LYG Sbjct: 196 VPEFVDATDRQIQQFHEFTKRMKEASVAPKIRHLANTAATLNRPEIRFELVRPGIGLYGY 255 Query: 223 TDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 +++ +Q +T +A++ ++ G +SYG ++ A+ +GYADG Sbjct: 256 EPDPAMGNSQTYGLQPAMTLQAQLGTVKTVEEGHGISYGRTYLTPNNTSTAIVPLGYADG 315 Query: 279 YPLTLSGLDSEHSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDI-TDSLSIEV-- 330 + SG D + + V GG + G V + G++ MD + D+ D+ + V Sbjct: 316 ILRSASGFDMQGARHVNKPGGPVRVETKNGARIVNVSGRVCMDQFIVDLKGDASELGVLE 375 Query: 331 GDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G+ + +FGP + DD A A+GT +Y+++ IG R + Y Sbjct: 376 GNTVTLFGPGRGLEFAEPTADDWAEAAGTISYEIMTGIGARVPRLY 421 >gi|326560246|gb|EGE10634.1| alanine racemase [Moraxella catarrhalis 7169] gi|326566436|gb|EGE16586.1| alanine racemase [Moraxella catarrhalis BC1] gi|326570243|gb|EGE20288.1| alanine racemase [Moraxella catarrhalis BC8] gi|326570980|gb|EGE21004.1| alanine racemase [Moraxella catarrhalis BC7] Length = 380 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 37/379 (9%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + I AL +N + L + A+VK +AYG G + PAL + F V + E Sbjct: 6 ITIHPNALTHNLQIIKSQLDRTTKVLAMVKADAYGHGIDATIPALIH--ADGFGVACLSE 63 Query: 68 GVKLRL-----YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 + ++ + + + + K+ D + +I QL + + Sbjct: 64 AMAVKQVLDGMNHKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLIWALSHRPKQDQF 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 H L+ +TG +RLG + + + + ++ SH ACADD S +N+ Q+ Sbjct: 124 CHTIWLKYNTGMSRLGFNDDHIITAAKSLADAG--YRLILTSHFACADDKSHPLNAQQIS 181 Query: 181 RFRTLISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 +F ++ + L +S+GI + H R GI+LYG + K+ + Sbjct: 182 KFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLM 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A+++ I AG+ + Y + IAV +IGY DGYP Sbjct: 242 PAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPR------------ 289 Query: 294 VFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 V +G K + ++ I+G++ MDM M DI D L I + + ++G +D+VA+ Sbjct: 290 VVMGAKVSVTDTSGNRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAM 348 Query: 349 ASGTTNYDLLVRIGTRYAK 367 +GT Y+L+ R+ TR + Sbjct: 349 CAGTIGYELMCRLTTRPKR 367 >gi|313839518|gb|EFS77232.1| alanine racemase [Propionibacterium acnes HL086PA1] gi|315079051|gb|EFT51058.1| alanine racemase [Propionibacterium acnes HL053PA2] gi|327334461|gb|EGE76172.1| alanine racemase [Propionibacterium acnes HL097PA1] Length = 352 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 142/359 (39%), Gaps = 24/359 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81 M +G+ + VK +AYG G +++ + V +V EG +L I Sbjct: 1 MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGITLPIL 60 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140 L P + + + L SK G++ + VD+G R+GL + Sbjct: 61 KLSPADPWDMDAAITSGMRLTVVDFDTLEAVSKAAVRLGITARIHIAVDSGMGRIGLRPE 120 Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPS-SHVNSVQLERFRTLISHYK----GIEAS 195 T + + ++ + +HL +D P +++ F T ++ + Sbjct: 121 HLAQLTAAADRTERVEVEGVFTHLPMSDVPEGEEFTRHEIDAFMTAVTQTQTDRGPFPLV 180 Query: 196 LASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGEL 253 ++SG +LG + + R GI YG + + + ++ + + ++ G+ Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPDPHANRADLHPALSWISHVTFVKTINPGDA 240 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 + YG + + IA +GYADG LS G I G + PI+G+I Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGHVLIGGSVHPIVGRI 289 Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368 MD M D+ S+ VGD + + G + DD+A GT +Y++ I R + Sbjct: 290 CMDQFMVDLGPDSSVTVGDEVVLIGTQGDEVLTADDMAELLGTISYEITCAISKRVDRR 348 >gi|315656254|ref|ZP_07909145.1| D-alanine racemase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493256|gb|EFU82856.1| D-alanine racemase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 442 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 98/440 (22%), Positives = 171/440 (38%), Gaps = 84/440 (19%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S +R ++L+A + N M + +++ A+VK NAYG G E++A A AG + V Sbjct: 7 SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66 Query: 63 TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88 E +LR Y + RI Sbjct: 67 AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147 + + + +S++ QL S+ + G L+VDTG R G + ++ Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186 Query: 148 NSFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFR--TLISHYKGIEASLAS- 198 + ++ L ++S + SHLA AD+ ++ QL+ F ++ G+ L Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246 Query: 199 --SSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGE 252 ++GI+ P H+ L R GIS YG + ++ V+ E ++ +++ G Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEKGA 306 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 VSYGG+ + + +GYADG G+ +I+G PI+G+ Sbjct: 307 AVSYGGEWVAPGPRWLGLLPVGYADGLHRLAKNR-----------GETWIRGRRAPIVGR 355 Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349 I MD + D+ ++ +E G+ IFG DD A Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPTLPTADDWAKW 415 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T NY+++ I + Y Sbjct: 416 TDTINYEVITSISPNVPRVY 435 >gi|298345414|ref|YP_003718101.1| alanine racemase [Mobiluncus curtisii ATCC 43063] gi|298235475|gb|ADI66607.1| alanine racemase [Mobiluncus curtisii ATCC 43063] Length = 442 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 172/440 (39%), Gaps = 84/440 (19%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S +R ++L+A + N M + +++ A+VK NAYG G E++A A AG + V Sbjct: 7 SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66 Query: 63 TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88 E +LR Y + RI + Sbjct: 67 AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYVPH 126 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147 + + + +S++ QL S+ + G L+VDTG R G + ++ Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186 Query: 148 NSFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFR--TLISHYKGIEASLAS- 198 + ++ L ++S + SHLA AD+ ++ QL+ F ++ G+ L Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246 Query: 199 --SSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGE 252 ++GI+ P H+ L R GIS YG + ++ V+ E ++ +++ G Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEKGA 306 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 VSYGG+ + + +GYADG G+ +IKG PI+G+ Sbjct: 307 AVSYGGEWVAPGPRWLGLLPVGYADGLHRLAKNR-----------GETWIKGRRAPIVGR 355 Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349 I MD + D+ ++ +E G+ IFG DD A Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPALPTADDWAEW 415 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T NY+++ I + Y Sbjct: 416 TDTINYEVITSISPNVPRVY 435 >gi|284043349|ref|YP_003393689.1| alanine racemase [Conexibacter woesei DSM 14684] gi|283947570|gb|ADB50314.1| alanine racemase [Conexibacter woesei DSM 14684] Length = 392 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 30/379 (7%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++L A++ N + G + A VK N YG G + A A G V + E Sbjct: 19 ARVNLAAIERNCALIRREIGADVALCAAVKANGYGHGAVQSARAAVAGGATWLAVATGGE 78 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY------SKLMSCGVS 121 +LR AR+ VL + P + D + V + + + Sbjct: 79 AAELRAARLDARLIVLGALAPEELDEALDADADVVAWNERFVEQLATAAGARAAATAAPP 138 Query: 122 HPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L++D G RLG E L +L+ ++H CAD+ + QL Sbjct: 139 IRVHLKLDVGMGRLGTRDADELLRVADRVAAAPGLELAGAMTHFPCADEDV-ALTRGQLA 197 Query: 181 RF----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQT 234 F L + + G+ A+S+ L P L R GI++YG + + +H ++ Sbjct: 198 AFTAFGERLRAAHPGVLLHAANSAAALALPESRLDLVRCGIAVYGLSPWEDDATAHGLEP 257 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + + ++ AGE V YG + + + IA IGY DG Sbjct: 258 ALELRSWVAALKPLAAGETVGYGARFRAQAPTWIATLPIGYGDGVRRG-----------W 306 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 G + G P++G+++MD D+ + +GD + G + ++VA Sbjct: 307 ERDGVALLGGRRRPLVGRVSMDNVTVDVGPEPGVALGDPAILIGAAGEERLTAEEVARRL 366 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT NY+++ + R + Y Sbjct: 367 GTINYEVVTALSARVVRAY 385 >gi|296113256|ref|YP_003627194.1| alanine racemase Alr [Moraxella catarrhalis RH4] gi|295920950|gb|ADG61301.1| alanine racemase Alr [Moraxella catarrhalis RH4] Length = 380 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 166/379 (43%), Gaps = 37/379 (9%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + I AL +N + L + A+VK +AYG G + PAL + F V + E Sbjct: 6 ITIHPNALTHNLQIIKSQLDRTTKVLAMVKADAYGHGIDATIPALIH--ADGFGVACLSE 63 Query: 68 GVKLRLYT-----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSCGV 120 + ++ + + + + K+ D + +I QLT+ + Sbjct: 64 AMAVKQVLDGMNVKKPIVLIEGAFSLDEWKVAIDHDFGCLIHHENQLTWALSHRPKQDQF 123 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 H L+ +TG +RLG + + + + ++ SH ACADD S +N+ Q+ Sbjct: 124 CHTIWLKYNTGMSRLGFNDDHIITAAKSLADAG--YRLILTSHFACADDKSHPLNAQQIS 181 Query: 181 RFRTLISHYKGIEAS----LASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQ 233 +F ++ + L +S+GI + H R GI+LYG + K+ + Sbjct: 182 KFDQALACIRSFAPDTLASLCNSAGIFNFKHQHHDWVRAGIALYGSKPITDQSAKALNLM 241 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T A+++ I AG+ + Y + IAV +IGY DGYP Sbjct: 242 PAMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPR------------ 289 Query: 294 VFLGGKGFI-----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVAL 348 V +G K + ++ I+G++ MDM M DI D L I + + ++G +D+VA+ Sbjct: 290 VVMGAKVSVTDTSGNRHLCDIIGRVAMDMFMIDI-DGLDIAINTPVVLWGDSPTIDEVAM 348 Query: 349 ASGTTNYDLLVRIGTRYAK 367 +GT Y+L+ R+ TR + Sbjct: 349 CAGTIGYELMCRLTTRPKR 367 >gi|304390969|ref|ZP_07372921.1| alanine racemase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325852|gb|EFL93098.1| alanine racemase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 442 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 171/440 (38%), Gaps = 84/440 (19%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S +R ++L+A + N M + +++ A+VK NAYG G E++A A AG + V Sbjct: 7 SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66 Query: 63 TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88 E +LR Y + RI Sbjct: 67 AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147 + + + +S++ QL S+ + G L+VDTG R G + ++ Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186 Query: 148 NSFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFR--TLISHYKGIEASLAS- 198 + ++ L ++S + SHLA AD+ ++ QL+ F ++ G+ L Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246 Query: 199 --SSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGE 252 ++GI+ P H+ L R GIS YG + ++ V+ E ++ +++ G Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVMRLETNVVQVKRVEKGA 306 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 VSYGG+ + + +GYADG G+ +IKG PI+G+ Sbjct: 307 AVSYGGEWVAPGPRWLGLLPVGYADGLHRLAKNR-----------GETWIKGRRAPIVGR 355 Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349 I MD + D+ ++ +E G+ IFG DD A Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDRLLGGIPGVPALPTADDWAEW 415 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T NY+++ I + Y Sbjct: 416 TDTINYEVITSISPNVPRVY 435 >gi|121611251|ref|YP_999058.1| alanine racemase [Verminephrobacter eiseniae EF01-2] gi|166969436|sp|A1WQY3|ALR_VEREI RecName: Full=Alanine racemase gi|121555891|gb|ABM60040.1| alanine racemase [Verminephrobacter eiseniae EF01-2] Length = 371 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 90/378 (23%), Positives = 150/378 (39%), Gaps = 32/378 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ +I +AL+ N + +A+ AVVK NAYG G ++ +L G F + Sbjct: 3 RPIQARIHSSALQANLRRVRQSVPDAKVWAVVKANAYGHGIARVFESLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E LR + I +L G+ P ++ L V+ Q+ + S H Sbjct: 61 LAEAQGLRGLGWRGPILLLEGVFEPRDLELCSRLGLWHVVHCDEQIDMLAAHRSQAPQHV 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + L+++ G NRLG + Q +++H + AD P + QL F Sbjct: 121 F-LKLNAGMNRLGFAPQRYRSAWARLGALAQVDEISLMAHFSDADGPRGI--APQLAAFV 177 Query: 184 TLISHYKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSHPMQT----VVT 237 G + S++ + + R GI LYG +T Sbjct: 178 RATQDLPGARSLCNSAATLRHAADASVRADWVRAGIVLYGSAPDFPGHDAGHWGLQPAMT 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 R+I +++ AG+ V YG + I VAA GYADGYPL G Sbjct: 238 LATRLIGVQQLQAGDTVGYGARFVAPGPMAIGVAACGYADGYPLHCG-----------TG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEV----GDYIQIFGPD-----IKLDDVAL 348 + G ++G+++MDM D+T + G + ++G + +D+VA Sbjct: 287 TPVLVDGIRTRVVGRVSMDMLTVDLTPLQRAGLQPGFGSEVTLWGRASSGAVLSIDEVAQ 346 Query: 349 ASGTTNYDLLVRIGTRYA 366 A GT Y+L+ + R Sbjct: 347 AGGTLGYELMCALAQRVP 364 >gi|308447430|ref|XP_003087428.1| hypothetical protein CRE_20666 [Caenorhabditis remanei] gi|308256594|gb|EFP00547.1| hypothetical protein CRE_20666 [Caenorhabditis remanei] Length = 326 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 98/339 (28%), Positives = 154/339 (45%), Gaps = 22/339 (6%) Query: 35 VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94 +VK NAYG G + AL F V + E +++R Q I ++ GI E I Sbjct: 1 MVKANAYGHGVKDCLAALNA--TDAFGVACLAEALEIRALGYQQPITLIEGIFSADEMIS 58 Query: 95 F-DTNLIPVISSVPQLTFYSKLMSC--GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + NL V+ PQL + +++++G NRLG E ++ + Sbjct: 59 VLENNLEIVVHHQPQLAWLRAHKKQYIDKGLKVWVKLNSGMNRLGFKFAEIIEVIQSLKA 118 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ 211 + + + H A AD +N Q ++F + + + I AS +S+ I P +F Sbjct: 119 EGFTCV--LAMHFANADADHHPLNEQQKDQFLQVKAACEPILASCCNSAAIFKWPELNFD 176 Query: 212 LTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLI 268 RPGI LYG + ++S ++ V++ A II + AGE V YG + I Sbjct: 177 FVRPGIMLYGASPFADRSVAELDIKPVMSFTAEIIALNHIQAGESVGYGSTFFSKNEMDI 236 Query: 269 AVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSI 328 A+ +IGY DGYP T I G M I+G++ MDM D+T Sbjct: 237 AIVSIGYGDGYPRTF-----------PQQNYVSINGQMTAIIGRVAMDMIAIDVTGL-DA 284 Query: 329 EVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 +G ++++G D +DDVA A+GT Y+LL R+ R + Sbjct: 285 PLGTVVELWGKDRLVDDVAAANGTIGYELLCRMSARPIR 323 >gi|227872694|ref|ZP_03991023.1| alanine racemase [Oribacterium sinus F0268] gi|227841454|gb|EEJ51755.1| alanine racemase [Oribacterium sinus F0268] Length = 360 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 171/362 (47%), Gaps = 29/362 (8%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++L+ L++N ++ + L + AVVK +AYG G ++A A+ F V ++EE Sbjct: 13 AVVELSYLQDNIKAVKSHLRKGMQFCAVVKMDAYGHGIVEVARAVEEE-CALFGVATIEE 71 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 G+ LR I +L + GQ + ++ +++P + + Q + G S P L Sbjct: 72 GIILRKGGITTPILILGVVPKGQYRSLWHYDIMPSLFTREQGEALSAISKKEGKSLPCHL 131 Query: 127 QVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +DTG R+G+ +++ A++ F+ ++ I SH AC DD +Q RF Sbjct: 132 ALDTGMGRIGIQVEKEGAVELGLELFSLSGIEICGIFSHFACCDDRDKSYTEMQERRFAD 191 Query: 185 LIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237 + +GI+ L++S+GIL G + + R GI++YG + + P++ V++ Sbjct: 192 YLRALEERGIKLPLCHLSNSAGILEGRGVQYDMVRDGIAMYGLYPSKDMERKLPLKQVLS 251 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A+I I++ +GE +SYG +A +GY DGYP LS Sbjct: 252 WKAKISHIKEVPSGEAISYGASFVTREPMRVATVPVGYGDGYPRVLSN-----------K 300 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 K + G PILG++ MD M D++ + E+ + + G +I L D G Sbjct: 301 AKVLVGGKPCPILGRVCMDQFMIDVSHT-EAEIFQEVTLLGQEGEEEISLYDWEEW-GVF 358 Query: 354 NY 355 +Y Sbjct: 359 SY 360 >gi|300172538|ref|YP_003771703.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811] gi|299886916|emb|CBL90884.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811] Length = 370 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 152/375 (40%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++I ALK+N + SG + VK NAYGLG + A GV V Sbjct: 7 RPTQIEISKKALKHNVAVVKQTSGADKIFLAVKSNAYGLGLVPTSKAAVAGGVYGLAVAV 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR I VL +++ +++ + S+ L ++ ++ Sbjct: 67 IDEALALRHERITEPILVLGISQAKYAELMAVQHIMATVVSLSWLKEAAQSLTGEQRLQV 126 Query: 125 ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +L VDTG R+G +E A T+ +K + + +H A +D + +QL+R+ Sbjct: 127 SLGVDTGMGRIGFRTRESLAQAITYLQAHKDIFDYVGLATHFAESDSVQTDYFYMQLKRW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 + + S + + ++ R G LYG + +Q V++ Sbjct: 187 HDITDGLPEPKYYHVANSGAAMYHADEVPHEVIRVGTVLYGVEPSRGELADGKNLQPVMS 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + +++ AGE +SY + + D I IGY DG+ +SG Sbjct: 247 LRSEMNFVKQLPAGEGISYSHKYTTSSDEWIGTVPIGYGDGWLRKMSGFS---------- 296 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G PI+G++ MD M + + G + + G D L+DVA + Sbjct: 297 --VIVDGQYAPIVGQVAMDQLMIKLPHEYPV--GTKVTLIGKDGDLENTLEDVAQHANLA 352 Query: 354 NYDLLVRIGTRYAKF 368 ++++ + R + Sbjct: 353 PWEIMTGMQDRVHRI 367 >gi|15645557|ref|NP_207733.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 26695] gi|3913027|sp|O25595|ALR_HELPY RecName: Full=Alanine racemase gi|2314079|gb|AAD07986.1| alanine racemase, biosynthetic (alr) [Helicobacter pylori 26695] Length = 377 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 162/381 (42%), Gaps = 32/381 (8%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++D +L++N+ ++ ++ +A AVVK NAYG G K + G V +++E Sbjct: 8 VEVDTASLRHNFSAVKSIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 ++LR + + I +L ++ D +L +I S+ Q +S++ + Sbjct: 68 ALELRSHFSKTPILILGYSPNANASMLVDNDLSAMIFSLEQAEVFSQMALKSQKRLKVHI 127 Query: 127 QVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLGL ++++ K ++ I +HL+ AD Q++ F Sbjct: 128 KIDTGMHRLGLEPNFKSIETIKKIRALKGLEIEGIFTHLSNADAKIKTHAKNQMKAFNAF 187 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQTVV 236 + + +S+GIL N + L RPGI LYG T++ Sbjct: 188 LEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNGMKESCPTIL 247 Query: 237 ----TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +A+I+ IR GE + YG ++L+ V A+GYADG L Sbjct: 248 KNVISLKAQIVQIRSVKKGEFIGYGEHFYTNEETLVGVLALGYADGLMRALGNRI----- 302 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + I + P++GK+ MD + + + GD + +FG ++ Sbjct: 303 ------QVAINNQLAPLIGKVCMDQCFVKLNNI-QAKEGDEVILFGDKSAKANDASEIXA 355 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T Y+ + + R + Y Sbjct: 356 LLNTIAYETISTLSKRLERVY 376 >gi|224826258|ref|ZP_03699360.1| alanine racemase [Lutiella nitroferrum 2002] gi|224601359|gb|EEG07540.1| alanine racemase [Lutiella nitroferrum 2002] Length = 379 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I L AL+ N+ L+G AR AV+K +AYG G ++A AL + F + ++ Sbjct: 7 VEIHLPALRRNYALAKTLAGAARVWAVLKSDAYGHGLTRVALALPD--ADGFALIQPDDA 64 Query: 69 VKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 V LR A+I +L G G I L V+ S Q L+ ++ Sbjct: 65 VTLRHAGIGAQILLLEGALEEGDVDIAAQHRLDLVLRSEHQ---LQWLLQKARPVTVWVK 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 V+TG NR G + + AL +++ +++H ACAD + + RF ++ Sbjct: 122 VNTGMNRFGFTPERALAVVRQLQATPFCRVAGLMTHFACADQLGTPL-DEPWRRFLQVVE 180 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT----VVTAEARII 243 G+ + A+S+ +L H + R G LY + V+ ARI+ Sbjct: 181 A-TGLPYTAANSAALLREARTHGAVARVGGLLYNNNPFYPDTRLWPMAAAPVMRFAARIV 239 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 + AG+ + YG D I + GY DGYP + G + Sbjct: 240 HVSTLQAGDSIGYGAAFTARHDMRIGIVGAGYGDGYPRSA-----------PSGTPVLVN 288 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIG 362 G ++G++ M++ D++ ++VGD + ++G P + D++A GT + +L + Sbjct: 289 GRRAALVGRVAMNVLAIDLSALPEVQVGDEVTLWGAPGLSCDEIAWRCGTISEELQCALT 348 Query: 363 TRYA 366 +R Sbjct: 349 SRVP 352 >gi|332283733|ref|YP_004415644.1| alanine racemase, catabolic [Pusillimonas sp. T7-7] gi|330427686|gb|AEC19020.1| alanine racemase, catabolic [Pusillimonas sp. T7-7] Length = 376 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 151/386 (39%), Gaps = 37/386 (9%) Query: 5 EFLRLKIDLTALKNNWHSMN---------ALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55 + + +++L +N + A R AV+K NAYG G ++ Sbjct: 3 RPISATVSVSSLSHNLQRVANGLQQSCNAAKPLRPRVWAVIKANAYGHGIDQAVQGFAQ- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 + + E V+ R I +L G PG ++ + L + QL + Sbjct: 62 -ADGLAMLDLNEAVRCRELGWTKPILLLEGFFEPGDIAVLDEYCLTTSLHCQEQLEMLAA 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 ++++ G NRLG S +A + + +SH A ADD Sbjct: 121 AKPAN-PLNAFVKLNVGMNRLGFSEYAFPDAYRQAQQLQQQGILASVGKMSHFARADDSP 179 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLG-----PNYHFQLTRPGISLYGGTDKI 226 QL+ F + G + S++ + G + Q RPGI LYG + Sbjct: 180 VTTTQ-QLQVFNRMTQGLPGPFSVCNSAASLTAGLWTTVSSDEEQWVRPGICLYGSSPFE 238 Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ + ++ +T A++I +R+ G V YG + I + A GYADGYP Sbjct: 239 DRLPDALGLRPAMTLAAQLISVREIPRGAGVGYGHVFTASDAMRIGIVACGYADGYPRHA 298 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIK 342 G + G ++G+++MDM D+T VG + ++G Sbjct: 299 G-----------TGTPICVDGVRTRLVGRVSMDMLAVDLTPVPQAGVGSPVVLWGEGGPS 347 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKF 368 +D+VA A+GT Y+LL + R + Sbjct: 348 VDEVAQAAGTIGYELLCAVAPRVPRV 373 >gi|296328108|ref|ZP_06870641.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154779|gb|EFG95563.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 354 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 162/373 (43%), Gaps = 32/373 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +IA L V+ F V ++ Sbjct: 2 RTWIEIDKENLKYNVLKLKEIANNKEVLGVVKANAYGLGSIEIAKILKEVEVKLFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + V ++ + L+S ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDEL---VEATKRGVHVAISSMEQLQFLVSKNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + +A N L L I SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDDAEKVIEYCKNNNL-NLVGIFSHLSDSDGNTIETKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSS-GILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + + +++S+ + L R GI +Y T K+ ++ + T +++ Sbjct: 178 KKIANSLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTPYLKNIFTIKSK 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I+ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 ILFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGYVL 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----Y 355 I + I+G I MDMTM + + I++GD + + DI LD++ + Sbjct: 286 INNHRCEIIGNICMDMTMIRVPKEIENSIKIGDEVTVINADI-LDNLN-----IPELCVW 339 Query: 356 DLLVRIGTRYAKF 368 + + IG R + Sbjct: 340 EFMTGIGRRVKRI 352 >gi|293606270|ref|ZP_06688632.1| alanine racemase [Achromobacter piechaudii ATCC 43553] gi|292815335|gb|EFF74454.1| alanine racemase [Achromobacter piechaudii ATCC 43553] Length = 375 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 156/385 (40%), Gaps = 40/385 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + + ++AL +N ++ AV+K NAYG G E+ Sbjct: 3 RPISATVSVSALAHNLATVRRHLEQTAAAVGGLPPSIWAVIKANAYGHGIEQAVTGFSK- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 Q + ++E V+ R I +L G P +I +L + + QL ++ Sbjct: 62 -AQGLAMLDLDEAVRCREAGWGGPILLLEGFFKPADLDLIDRYHLSTTVHNREQLDMLAR 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPS 171 L++++G NRLG S A + + ++H ACAD P Sbjct: 121 ARFSRR-VDIMLKLNSGMNRLGFSPASYPAAFERAMLLQQQGTLGSVGKMTHFACADGPQ 179 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN------YHFQLTRPGISLYGGTDK 225 + QL F ++ G S+ +S+ L + RPGI LYG + Sbjct: 180 G--VTEQLALFNSVTHKLPG-TISVCNSAATLRFADIAVSSPTQTHWVRPGICLYGASPF 236 Query: 226 INK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282 + S ++ +T + II +++ AG+ V YG + R I + A GYADGYP Sbjct: 237 ADAQAASFGLKPALTLSSEIIAVQELKAGDSVGYGAIFRAERAMRIGIVACGYADGYPRH 296 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-I 341 G + G ++G+++MDM + D+ + VG + ++G D Sbjct: 297 A-----------TTGTPVVVAGIRTQLVGRVSMDMLIVDLDPVPAAGVGTPVVLWGEDGP 345 Query: 342 KLDDVALASGTTNYDLLVRIGTRYA 366 +DDVA A+GT Y+LL + R Sbjct: 346 SVDDVAQAAGTIGYELLCALAPRVP 370 >gi|20140854|sp|Q9KHL7|VANTG_ENTFA RecName: Full=Amino-acid racemase; AltName: Full=Vancomycin G-type resistance protein VanT gi|7960293|gb|AAF71283.1|AF253562_7 racemase [Enterococcus faecalis] Length = 711 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 28/372 (7%) Query: 9 LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+I+L L++N +++ A+S AVVK AYG G ++ GV V +++E Sbjct: 347 LEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYFEPIGVFYLAVATIDE 406 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G++LR Y + I +L P + K + + ++ + L G ++ Sbjct: 407 GIRLRKYGIFSEILILGYTSPSRAK---ELCKFELTQTLIDYRYLLLLNKQGYDIKAHIK 463 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA--CADDPSSHVNSVQLERFRTL 185 +DTG +RLG S ++ F K + + A ++ + + F + Sbjct: 464 IDTGMHRLGFSTEDKDKILAAFFLKHIKVAGIFTHLCAADSLEEKEVAFTNKPIGSFYKV 523 Query: 186 ISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA--- 238 + K I +S L + + G++LYG N ++T + A Sbjct: 524 LDWPKSSGLNIPKVNIQTSYGLWNIQSWNVIYQSGVALYGVLRSTNDKTKLETDLRACSF 583 Query: 239 -EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A+++LIRK G V Y TRDSLIA+ IGYADG+P LS Sbjct: 584 LKAKVVLIRKIKQGGSVGYSRAFTATRDSLIAILPIGYADGFPRNLS----------CGN 633 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G PI+GKI MD D+TD +++ G + G +I VA ++ + Sbjct: 634 SYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAESI 693 Query: 354 NYDLLVRIGTRY 365 +LL R+ R Sbjct: 694 TNELLSRMEHRL 705 >gi|283797687|ref|ZP_06346840.1| alanine racemase [Clostridium sp. M62/1] gi|291074583|gb|EFE11947.1| alanine racemase [Clostridium sp. M62/1] Length = 422 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 8 RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+IDL +++N+ ++ +++ + VK NAYG G + AL AG V +++ Sbjct: 11 WLEIDLDTIRSNFAALRSMAGPGIKIMPAVKANAYGHGIVESCRALEQAGADYLGVGNID 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E + LR Q I + G + + +LIP I SV S HP Sbjct: 71 EAILLRENGIQTPILIFAGNLVEEVADLYIRYSLIPTIFSVKAAQAIS--RLSKAEHPVF 128 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFR 183 L ++TG RLG++ +E DF + ++ I SH+A AD D Q RF Sbjct: 129 LGIETGRGRLGVNAEEFPDFVRQTAALPGIKIEGIYSHMAAADWPDKPHEYADWQYRRFL 188 Query: 184 TLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM---QTV 235 K + LA++ G + PN PG +++G + + + Sbjct: 189 DGTRVLKELGLSVPFMQLANTPGSIAYPNLRLSGICPGRAVWGYSPLEKRDGHPALSFPM 248 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++R+++++ + G+ +L I V A G +DG + Sbjct: 249 KAWKSRLLMVKDVIGGKFGPGYQAVRLDVPKHIGVMAGGISDGISPNFAN---------- 298 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 GG ++G VP+ I ++ T+ D+TD GD + +FG +I ++++ A G Sbjct: 299 -GGSVLLRGKRVPVASSICLEHTILDLTDCPEAAEGDEVVLFGKQGDAEITMEELRAAFG 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 + I ++ Y Sbjct: 358 RDLMEFWTGITPHVSRIY 375 >gi|226356276|ref|YP_002786016.1| alanine racemase [Deinococcus deserti VCD115] gi|259710064|sp|C1CVP5|ALR_DEIDV RecName: Full=Alanine racemase gi|226318266|gb|ACO46262.1| putative Alanine racemase [Deinococcus deserti VCD115] Length = 355 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 27/372 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQD 59 M S + I AL +N ++A +G R VK NAYG G E IA A + V Sbjct: 4 MQSRAY--ALISEAALHHNLSGLSARAG-TRLLLPVKANAYGHGLELIARQAAAHPDVWG 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V + E + L + +L P + + D + +SS+ + Sbjct: 61 LAVATPREAQAVALLNLGRPVVLLTPPTPDEVVPLADLGVRLPVSSLEEAEAL------P 114 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 V L+VDTG NRLG EA+ + + +H A D+ QL Sbjct: 115 VHARAHLKVDTGMNRLGARPDEAIRIGQRLAERGVL--EGAYTHFATTDEEDLSFAHEQL 172 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTD-KINKSHPMQTVVT 237 RFR++I+ + A A+ GIL + L+RPG++ YG + + P+ V+T Sbjct: 173 RRFRSVIAALPPVLAHCANGGGILSLGHLGDMGLSRPGLASYGFAPAHLQRVVPLTPVMT 232 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A + + KA AGE VSYGG + RD+ +A GYADGYP L Sbjct: 233 LRATVTQVHKAFAGESVSYGGLWQAPRDTTLATIGFGYADGYPRNA-----------TLR 281 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYD 356 ++G P++G+I MD M D+T + GD ++ +G D+ + +VA T Y+ Sbjct: 282 AHVLVRGERRPVVGRICMDQCMVDVTGL-EVRAGDQVECWGSGDLTVSEVAGWGDTIEYE 340 Query: 357 LLVRIGTRYAKF 368 +L +G R + Sbjct: 341 VLTGLGERVERV 352 >gi|212704878|ref|ZP_03313006.1| hypothetical protein DESPIG_02945 [Desulfovibrio piger ATCC 29098] gi|212671720|gb|EEB32203.1| hypothetical protein DESPIG_02945 [Desulfovibrio piger ATCC 29098] Length = 352 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 155/357 (43%), Gaps = 30/357 (8%) Query: 31 RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90 R V+K +AYG G ++A AL AG + F V +V EG+ LR I L G + Sbjct: 6 RLMPVIKSDAYGHGMTEVAHALDAAGARHFAVGTVAEGICLRQDGLAQTILPLLGCQNDE 65 Query: 91 EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-LQVDTGFNRLGLSLQEALDFTHNS 149 + + + + + + + +S +++DTG +RLG S ++ Sbjct: 66 DWQQANACGLTPLITGFEALEKAAALSSPADPWGVAIKLDTGMSRLGFSAEDIPALLERL 125 Query: 150 FNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI----SHYKGIEASLASSSGILL 204 + SL +SH CAD P QLE+F + + Y ++ SLA+S+G + Sbjct: 126 RACPGLKPSLAVSHFPCADMPEQEAFTRRQLEKFTAMTDSLRAAYPSLKRSLANSAGTMG 185 Query: 205 GPNYHFQLTRPGISLYGGTDK-----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259 P F+L RPG SLYGG + ++ V+ A ++ +R GE +SYG Sbjct: 186 WPESRFELCRPGFSLYGGNPFRGTAWEGRGAGLEPVMEVSAPLLQVRHLKPGEGISYGQT 245 Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 R+ +AV GYA GYP SG + G P +G+I M M M Sbjct: 246 FIAPREMSVAVVGAGYATGYPRGASGRI-----------HVLVNGRRAPQVGRICMGMFM 294 Query: 320 FDITDSLSIEVGDYIQIFG-------PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D+T GD + G + +D++A A G +Y+LL +G + Y Sbjct: 295 IDVTGLP-AHAGDLAWLLGGPAAPGETPVSIDELAEACGGFSYELLCLLGQGSPRVY 350 >gi|311107365|ref|YP_003980218.1| alanine racemase [Achromobacter xylosoxidans A8] gi|310762054|gb|ADP17503.1| alanine racemase [Achromobacter xylosoxidans A8] Length = 375 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 147/384 (38%), Gaps = 38/384 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + + ++AL +N ++ AV+K NAYG G E+ Sbjct: 3 RPISATVSVSALAHNLAAVRRHLDQTAEAASGLPPSIWAVIKANAYGHGIEQAVAGFSK- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 Q + ++E V+ R I +L G + + D + + Sbjct: 62 -AQGLAMLDLDEAVRCREAGWGGPILLLEGFFEPSDLDLVDRYHLSTTVHNREQLDMLAR 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSS 172 L++++G NRLG S + + ++H ACAD P Sbjct: 121 ARFSRRVDIMLKLNSGMNRLGFSPAAYAAAHERAMLLQQQGVLGSVGKMTHFACADGPQG 180 Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYGGTDKI 226 + QL F ++ G S+ +S+ L RPGI LYG + Sbjct: 181 --VNEQLALFNSVTHKMPGA-ISVCNSAATLRFAEIAVASETQAHWVRPGICLYGASPFA 237 Query: 227 NK---SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + S ++ ++ + II ++ AG+ V YG + R I + A GYADGYP Sbjct: 238 DAEASSFGLKPAMSLRSEIIAVQDLKAGDSVGYGAIFRADRSMRIGIVACGYADGYPRHA 297 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IK 342 G + G ++G+++MDM + D+ + VG + ++G + Sbjct: 298 -----------TTGTPVVVAGIRTQLVGRVSMDMLIVDLGPVPAAGVGSPVSLWGEEGPS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366 +D+VA A+GT Y+LL + R Sbjct: 347 VDEVAQAAGTIGYELLCALAPRVP 370 >gi|110680421|ref|YP_683428.1| alanine racemase [Roseobacter denitrificans OCh 114] gi|123361723|sp|Q163V1|ALR_ROSDO RecName: Full=Alanine racemase gi|109456537|gb|ABG32742.1| alanine racemase [Roseobacter denitrificans OCh 114] Length = 344 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 134/363 (36%), Positives = 187/363 (51%), Gaps = 26/363 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL+AL NW S+NALS + TAAVVK NAYGLG A AL AG + FFV EEG Sbjct: 6 LTIDLSALAANWRSLNALS-DVETAAVVKANAYGLGVGTAASALAEAGARHFFVAVAEEG 64 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 V LR +I V G G +I D L P+I+S+ Q+ + + H + +Q Sbjct: 65 VALRQALGAGPQISVFSGHMAGDTALIRDAGLTPMINSIDQM---IRHVEALPEHDFGIQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG+ E + + SL++SHLACAD+PS +N QL+ F + Sbjct: 122 LDTGMNRLGMEDGEWRAVREVATQR---PPSLVMSHLACADEPSHQMNRQQLDCFVEMTQ 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 SLA++ GIL+GP+YHF LTRPGI LYGG ++ VV + +I +R Sbjct: 179 DITA-PRSLAATGGILMGPDYHFDLTRPGIGLYGGLPFVDA----LPVVQLDVPVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V Y T + IA + GYADG + H+ + Sbjct: 234 VHPGETVGYANTWTATAPARIATISAGYADGLIRAMGAKARLHAGDTA-----------L 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+++MD+ D+T S D +Q+ G +D VA + T Y++L +G RY + Sbjct: 283 PVVGRVSMDLIGVDVTALGSDP--DSLQLIGRHQSVDTVAGFADTIGYEILTSLGDRYKR 340 Query: 368 FYT 370 YT Sbjct: 341 VYT 343 >gi|15806106|ref|NP_294810.1| alanine racemase [Deinococcus radiodurans R1] gi|6458816|gb|AAF10657.1|AE001958_11 alanine racemase [Deinococcus radiodurans R1] Length = 367 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 101/364 (27%), Positives = 160/364 (43%), Gaps = 25/364 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67 I AL +N ++ SG R VK +AYG G E + V V + +E Sbjct: 23 AHISAAALDHNLSALAQRSG-TRLLLPVKADAYGHGMELVGRLAAAHPDVWGLAVATPQE 81 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 L + +L P + + D + +S++ ++ L+ Sbjct: 82 AETLARLDLGKPLLLLTPPAPEELGALADLGVRLPVSTLAEVEALPAHAQA------HLK 135 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG NRLG +A + GQL + +H A AD+P QL RFR+++ Sbjct: 136 VDTGMNRLGARPADA--VAVGRALAERGQLEGVYTHFATADEPDLSFALTQLVRFRSVLD 193 Query: 188 HYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245 + A A+ G+L L RPG++ YG + + + V+T AR+ + Sbjct: 194 ALPPVLAHCANGGGVLSFGRIEGMSLARPGLAAYGYVPEHLRHVCALRPVMTVRARVNQL 253 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 A GE VSYG + R++ +AV +GYADGYP +G + I G Sbjct: 254 HTAYPGETVSYGALWRAERETGVAVVGMGYADGYPRNATGRAA-----------VLIGGE 302 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTR 364 P+LG+I MD M D+T + VGD+ +++G D+ + DVA T Y++L +G+R Sbjct: 303 RRPVLGRICMDQMMVDVTGL-DVGVGDWAELWGEGDLSVTDVARWGDTIEYEVLTGLGSR 361 Query: 365 YAKF 368 + Sbjct: 362 VERR 365 >gi|318042533|ref|ZP_07974489.1| alanine racemase [Synechococcus sp. CB0101] Length = 396 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 106/383 (27%), Positives = 168/383 (43%), Gaps = 28/383 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 H + +++ A++ N S+ L+ + AVVK + YG G +A A G F Sbjct: 17 HPRQRAWVEVCEAAVQANARSLRRSLAPGCQLMAVVKADGYGHGAVPVARAAAAGGASTF 76 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQL-TFYSKLMSC 118 V +++EGV+LR + + VL P + + L+P +S + + + Sbjct: 77 GVATLQEGVELRQAGLRQPVLVLGNLTQPEELRACLHWQLMPTLSGMREALLCQNLAAGS 136 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVN 175 G L++DTG RLG QE + QL+ + SHLA AD P + Sbjct: 137 GRPMAVQLKLDTGMARLGAPWQEGRRIAEAISALEAVQLAGLYSHLADADAPGTVLDPLT 196 Query: 176 SVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINK 228 Q ERF +++ + LA+S+G L H+ + R G++LYG + Sbjct: 197 RQQQERFEQVLTGVQEAGLACGSRHLANSAGTLRTAQLHYDMVRVGLALYGQRPAVHLGG 256 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 S +Q + AR+ LIR+ AG VSYG + R S +AV +IGYADG P LS Sbjct: 257 SLALQPAMQVRARVSLIREVPAGTGVSYGHRFTTQRPSRLAVVSIGYADGVPRLLSNRL- 315 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 + G +P +G ITMD + D T++ +E G + + G D I Sbjct: 316 ----------QVLHHGRRIPQVGAITMDQLVLDATEAPELEQGSVVTLLGSDGGERIDPL 365 Query: 345 DVALASGTTNYDLLVRIGTRYAK 367 + GT +++L R + Sbjct: 366 AWSDPCGTIPWEILCGFKHRLPR 388 >gi|237740856|ref|ZP_04571337.1| alanine racemase [Fusobacterium sp. 4_1_13] gi|229431153|gb|EEO41365.1| alanine racemase [Fusobacterium sp. 4_1_13] Length = 356 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 165/375 (44%), Gaps = 34/375 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +IA L GV+ F V ++ Sbjct: 2 RTWIEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ Q L+ ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQ---LQFLVDKNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA N L L I SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVNEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177 Query: 183 RTLISH-YKGIEASLASSSGIL--LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + +++ +E S+S + + L R GI +Y T K+ ++ + T + Sbjct: 178 KKIVNSLNLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTSYLKNIFTIK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R++ I+K VSYG L DS AV IGYADG LS GG Sbjct: 237 SRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGGY 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN--- 354 I + I+G I MDMTM I + I++G+ + + DI LD++ Sbjct: 286 VLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGNEVTVINADI-LDNLN-----IPELC 339 Query: 355 -YDLLVRIGTRYAKF 368 ++ + IG R + Sbjct: 340 VWEFMTGIGKRVKRI 354 >gi|315655821|ref|ZP_07908719.1| D-alanine racemase [Mobiluncus curtisii ATCC 51333] gi|315489885|gb|EFU79512.1| D-alanine racemase [Mobiluncus curtisii ATCC 51333] Length = 442 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 171/440 (38%), Gaps = 84/440 (19%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 S +R ++L+A + N M + +++ A+VK NAYG G E++A A AG + V Sbjct: 7 SQWPVRAVVNLSAYQENLAQMRRFAPHSQQMAIVKANAYGHGIERMALAALGAGTEWLGV 66 Query: 63 TSVEEGVKLRLYTPQ----------------------------------ARIFVLYGIHP 88 E +LR Y + RI Sbjct: 67 AKASEAFRLRKYLDKHGVPRDHLVDTPTSAMMRSRLYQTAAMGLPSATRPRILTWLYAPH 126 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147 + + + +S++ QL S+ + G L+VDTG R G + ++ Sbjct: 127 TDLLPVVKSEIDISVSTLDQLDQVSRACDAAGKRARLHLKVDTGLCRAGATDEDFPVLCK 186 Query: 148 NSFNKK---LGQLSLIISHLACADDPSSH---VNSVQLERFR--TLISHYKGIEASLAS- 198 + ++ L ++S + SHLA AD+ ++ QL+ F ++ G+ L Sbjct: 187 LARARERAGLVEVSAVWSHLARADEDTAAAEAFTKSQLKAFDEAWEVAQEAGLRPQLRHI 246 Query: 199 --SSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGE 252 ++GI+ P H+ L R GIS YG + ++ V+ E ++ +++ G Sbjct: 247 AATAGIIWYPESHYDLVRVGISGYGLSPNPEIASSWQLGVRPVLRLETNVVQVKRVEKGA 306 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 VSYGG+ + + +GYADG G+ +IKG PI+G+ Sbjct: 307 AVSYGGEWVAPGPRWLVLLPVGYADGLHRLAKNR-----------GETWIKGRRAPIVGR 355 Query: 313 ITMDMTMFDITDSLS---------IEVGDYIQIFGPD--------------IKLDDVALA 349 I MD + D+ ++ +E G+ IFG DD A Sbjct: 356 IPMDQIVVDLGPAVDDTGTSVPCPVEPGELAIIFGDPKDCLLGGIPGAPALPTADDWAEW 415 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T NY+++ I + Y Sbjct: 416 TDTINYEVITSISPNVPRVY 435 >gi|332094464|gb|EGI99513.1| alanine racemase [Shigella boydii 3594-74] Length = 324 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 92/337 (27%), Positives = 145/337 (43%), Gaps = 22/337 (6%) Query: 35 VVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93 +VK NAYG G E+I AL G F + ++EE + LR + I +L G Q+ Sbjct: 1 MVKANAYGHGIERIWSAL---GATDGFALLNLEEAITLRERGWKGPILMLEGFFHAQDLE 57 Query: 94 IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153 I+D + + + L+V++G NRLG L Sbjct: 58 IYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMA 117 Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLT 213 ++SH A A+ P +++ + SL++S+ L P HF Sbjct: 118 NVGEMTLMSHFAEAEHPDGISSAMARI---EQAAEGLECRRSLSNSAATLWHPEAHFDWV 174 Query: 214 RPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 RPGI LYG + + ++ V+T + II ++ AGE V YGG+ + I Sbjct: 175 RPGIILYGASPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIG 234 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329 + A GYADGYP G + G +G ++MDM D+T Sbjct: 235 IVAAGYADGYPRHA-----------PTGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAG 283 Query: 330 VGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 +G ++++G +IK+DDVA A+GT Y+L+ + R Sbjct: 284 IGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVP 320 >gi|330817458|ref|YP_004361163.1| Alanine racemase [Burkholderia gladioli BSR3] gi|327369851|gb|AEA61207.1| Alanine racemase [Burkholderia gladioli BSR3] Length = 356 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 141/347 (40%), Gaps = 20/347 (5%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 + ++ AVVK NAYG G + P L + F + +EE VKLR I +L Sbjct: 22 RRFAPRSKVWAVVKANAYGHGLARAFPGLRS--TDGFGLLDLEEAVKLRELGWAGPILLL 79 Query: 84 YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEAL 143 G + + D + + L++++G NRLG + + Sbjct: 80 EGFFRSTDVDVIDRYSLTTTVHNDDQLRMLETARLSKPINIQLKMNSGMNRLGYAPDKYR 139 Query: 144 DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGIL 203 + +++H A AD + Q+ F G SLA+S+ ++ Sbjct: 140 AAWERARTCPGIGQITLMTHFADADGERG--VADQMAAFERGAEGIAGAR-SLANSAAVM 196 Query: 204 LGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARIILIRKALAGELVSYGGQ 259 P+ H RPGI LYG + + +Q +T + +I ++ G+ V YGG Sbjct: 197 WHPDTHGDWVRPGILLYGASPSGRAADIAGAGLQAAMTLGSELIAVQNIAKGQAVGYGGA 256 Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 I V A GYADGYP G + G I+G+++MDM Sbjct: 257 FVAPAQMRIGVVACGYADGYPRIA-----------PEGTPIVVDGVRTRIVGRVSMDMIT 305 Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 D+T +G ++++G + +DDVA + T Y+L+ I +R Sbjct: 306 VDLTPVPGAGIGARVELWGQALPIDDVAASCSTVGYELMCAIASRVP 352 >gi|330719007|ref|ZP_08313607.1| alanine racemase [Leuconostoc fallax KCTC 3537] Length = 370 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 151/375 (40%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R++I +A+++N + +G + VK N YGLG ++ A G V Sbjct: 7 RPTRIEISKSAIQHNIEVVKQTAGATKLFLAVKSNGYGLGLVPVSQAAVAGGAYGLAVAL 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR A I +L Q +++ N+I + S+ L ++ +S Sbjct: 67 MDEALALRDARITAPIIILGISPAEQAELMAVQNIITTVVSLDWLKSAAQNLSGEQRLAV 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERF 182 ++ VDTG R+G ++AL T + + + +H + +D QLER+ Sbjct: 127 SIGVDTGMGRIGFRDRDALAETIDYLQQHQDKFEYTGLFTHFSESDSSEVAYFHKQLERW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVT 237 L + S + + + R G +YG ++N +Q V+T Sbjct: 187 HALTDGLPAPKFYHVANSGAAMYHADEVPHDVVRVGTVVYGMEPSRGELNDGKDLQPVMT 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I +++ AGE +SY + T D I IGY DG+ + G + Sbjct: 247 LRSEINFMKQLPAGEGISYSHKYTTTDDEWIGTVPIGYGDGWLRKMMGFN---------- 296 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G VPI+G++ MD M + + G + G D L+DVA + Sbjct: 297 --VIVDGQYVPIVGQVAMDQLMIRLPREYPL--GTTVTFIGRDGALENTLEDVATHADLA 352 Query: 354 NYDLLVRIGTRYAKF 368 ++++ R + Sbjct: 353 PWEIVTGFQERLHRI 367 >gi|169835830|ref|ZP_02869018.1| hypothetical protein cdivTM_01741 [candidate division TM7 single-cell isolate TM7a] Length = 342 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 84/350 (24%), Positives = 143/350 (40%), Gaps = 21/350 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I++ L +N + + + AV+K +AYG G KI AL G+++F V + +E Sbjct: 4 WAEININNLYSNIDEIEKIVPKEKIIAVIKADAYGHGMLKICDALIKKGIKNFAVATSDE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126 +K++ + +L + +I D + +++ ++ F K G + + Sbjct: 64 ALKIKELHNDIMVLILGPVENEYMDLIADKKIYFMVTDFEEIEFLEKTGKENGKTVDVFI 123 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++DTG R+G E N K I SH + +D + +Q +F+ + Sbjct: 124 KIDTGMGRVGFQESEVEQLNKILKNVKHINPIGIFSHFSSSDS-NKEYTKLQERKFKAMC 182 Query: 187 SHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLY-GGTDKINKSHPMQTVVTAEA 240 L +S G L R GI +Y G TDK + + V++ A Sbjct: 183 EKISSGIPSIRYRHLHNSFGTLKFQESVQDFVRAGIIIYGGVTDKETAPYKFKPVMSLFA 242 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I I+ +SYG A +IGYADG LS G Sbjct: 243 KISYIKTLKEDSFISYGNTYLGKAGETYATVSIGYADGVRRDLSN-----------KGYV 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDS--LSIEVGDYIQIFGPDIKLDDVAL 348 F KG+ I G++ MD M + D + GD ++ FG +I + +VA Sbjct: 292 FYKGHKCKIAGRVCMDQLMILLPDELKDEAKKGDVVEFFGENISVVEVAE 341 >gi|20137249|sp|Q9RVE3|ALR_DEIRA RecName: Full=Alanine racemase Length = 351 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 101/364 (27%), Positives = 160/364 (43%), Gaps = 25/364 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67 I AL +N ++ SG R VK +AYG G E + V V + +E Sbjct: 7 AHISAAALDHNLSALAQRSG-TRLLLPVKADAYGHGMELVGRLAAAHPDVWGLAVATPQE 65 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 L + +L P + + D + +S++ ++ L+ Sbjct: 66 AETLARLDLGKPLLLLTPPAPEELGALADLGVRLPVSTLAEVEALPAHAQA------HLK 119 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG NRLG +A + GQL + +H A AD+P QL RFR+++ Sbjct: 120 VDTGMNRLGARPADA--VAVGRALAERGQLEGVYTHFATADEPDLSFALTQLVRFRSVLD 177 Query: 188 HYKGIEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKSHPM-QTVVTAEARIILI 245 + A A+ G+L L RPG++ YG + + + V+T AR+ + Sbjct: 178 ALPPVLAHCANGGGVLSFGRIEGMSLARPGLAAYGYVPEHLRHVCALRPVMTVRARVNQL 237 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 A GE VSYG + R++ +AV +GYADGYP +G + I G Sbjct: 238 HTAYPGETVSYGALWRAERETGVAVVGMGYADGYPRNATGRAA-----------VLIGGE 286 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTR 364 P+LG+I MD M D+T + VGD+ +++G D+ + DVA T Y++L +G+R Sbjct: 287 RRPVLGRICMDQMMVDVTGL-DVGVGDWAELWGEGDLSVTDVARWGDTIEYEVLTGLGSR 345 Query: 365 YAKF 368 + Sbjct: 346 VERR 349 >gi|251771481|gb|EES52058.1| alanine racemase [Leptospirillum ferrodiazotrophum] Length = 403 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 106/387 (27%), Positives = 162/387 (41%), Gaps = 38/387 (9%) Query: 8 RLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R+ +DL L+ N + +L V+K NAYG G ++ + + G+ V + Sbjct: 18 RVTVDLGGLRENVRAVLRSLPKGTGLLPVIKSNAYGHGIIPVSQLMTDEGIPRVAVMGAD 77 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EG LR +I +L G P + ++ + L P+I + Q+ + S L Sbjct: 78 EGCLLRKSGFSGKIILLGGFAPDEIQLCQNLRLTPIIHHMDQVRALERFSPEAPSLDVHL 137 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++D+G RLG E ++ +++H +D S+ E FR I Sbjct: 138 KIDSGMGRLGFLPSEFPLVLDRLQRMPSVKIEGLMTHFPVPEDRED--TSICREIFRQSI 195 Query: 187 SHYKGIEA------SLASSSGILLGPNYHFQ------------LTRPGISLYGGTD-KIN 227 G A +SSG +L RPGI LYG N Sbjct: 196 VTMIGHPALSALSVVHMASSGAILSGEVMLDLPTPPSGRRISFWARPGILLYGHFPGAHN 255 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 S P++ V EAR++ IR G VSYG ++ RDS + V +GYADG P LSG Sbjct: 256 PSFPVRPVFGLEARVLAIRTLPRGSSVSYGRTVRVDRDSRVGVLGMGYADGLPRLLSG-- 313 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY-IQIFGPD----IK 342 G + + P LG+I MDM + D+TD + E I + PD + Sbjct: 314 ---------KGWAVVGNHRAPFLGRICMDMVVVDLTDIPADETHSEWITLIDPDNTLSMS 364 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +D +AL T Y++L +G R + Y Sbjct: 365 VDQLALEGNTIPYEILCLLGHRSERRY 391 >gi|328954808|ref|YP_004372141.1| alanine racemase [Coriobacterium glomerans PW2] gi|328455132|gb|AEB06326.1| alanine racemase [Coriobacterium glomerans PW2] Length = 383 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 155/384 (40%), Gaps = 30/384 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + ++ID A+ N + L R V+K +AYG G + + + +AG F V Sbjct: 10 RWAWVEIDRGAMLRNTRAFKKMLKPRQRLCCVLKADAYGHGAVESSKIMRSAGADMFAVA 69 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSH 122 +V EG++LR A + VL + + +L+P + S L F + Sbjct: 70 TVAEGIELRRGGCSAPVLVLGEPPCDAIPELLENDLMPAVYTSEFALAFGECAVQVDKVG 129 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 Y L ++TG NR+G+ + + F + Q + +H A ADDP +Q RF Sbjct: 130 KYHLAIETGMNRIGVHYTKVVSFRRGIEFHRGIQCDGVFTHFATADDPCGWDYKLQCTRF 189 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 + + ++ +L P H + R GI LYG + + V Sbjct: 190 DEAVQAMRDAGFECGIVHCDNTPASILDPESHHDMIRVGIGLYGLQPADATRERIRLDPV 249 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ AR++ + GE V YG ++ R + I IGYADG TLS Sbjct: 250 MSVRARVMRVAYPSMGEGVGYGFTYRVPRATVQICTLPIGYADGLARTLSNRMD------ 303 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDI-----TDSLSIEVGDYIQIFGPD----IKLDD 345 +G + +G I MD TM I E GD + I G D + +D+ Sbjct: 304 -----VLYRGGRIRQVGNICMDQTMVAIQQTPAEPIPEAEYGDLMTIVGRDGDAEVSMDE 358 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +A T NY++ G R K Y Sbjct: 359 MARLRNTINYEVACDFGMRLEKIY 382 >gi|262066089|ref|ZP_06025701.1| alanine racemase [Fusobacterium periodonticum ATCC 33693] gi|291380184|gb|EFE87702.1| alanine racemase [Fusobacterium periodonticum ATCC 33693] Length = 354 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 30/372 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + L+ + VVK NAYGLG +IA L GV F + ++ Sbjct: 2 RTWVEIDKENLKYNILKLKELANDREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE V+L+ +A +L + + + +++ + L+ ++ Sbjct: 62 EEAVELQEAGIKANFLILGASFEDEL---IEATKRGIHTAISSMQQLKFLVRNNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA + + L L I +HL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDEAEEVINFCKTNNL-NLVGIFTHLSDSDGNTIDTKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + ++ +++S+GI + K+ ++ V T ++++ Sbjct: 178 KNIVKDLDLKYIHISNSAGITNFHDDILGNLVRAGIAMYSFTGNKKTSCLKNVFTIKSKV 237 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + +K VSYG L DS AV IGYADG L GG I Sbjct: 238 LFTKKVGKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYL-----------TKGGYVLI 286 Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----YD 356 Y I+G I MDMTM I L I++ D + + DI +D++ ++ Sbjct: 287 NNYRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLN-----IPELCVWE 340 Query: 357 LLVRIGTRYAKF 368 + IG R + Sbjct: 341 FMTGIGRRVKRI 352 >gi|257069444|ref|YP_003155699.1| alanine racemase [Brachybacterium faecium DSM 4810] gi|256560262|gb|ACU86109.1| alanine racemase [Brachybacterium faecium DSM 4810] Length = 390 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 140/376 (37%), Gaps = 27/376 (7%) Query: 11 IDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 ID +A+ N +M L AVVK + YG G A A G V + Sbjct: 19 IDPSAITENTRAMGTLLEEQTALMAVVKADGYGHGMLTAARAAIEGGATWLGVAHPASAL 78 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVSHPYA 125 L A+I ++ + V SV Sbjct: 79 ALARADLDAQILTWLFEPHTARIVLPEVLASGVDVSVGSPEMLALVSEAARQADRRARVH 138 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L++DTG R G+ + + Q + +HL ADDPS Q+E F + Sbjct: 139 LKIDTGMGRNGVLPWQIREMGATLREDDFLQATGAWTHLTSADDPSDPATDQQVELFDSA 198 Query: 186 ISHYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +A+S+ L P+ H L RPGI+LYG + P++ +T + Sbjct: 199 CAAFADEVGPIPLQHIANSAATLTRPDLHRDLVRPGIALYG-YPPVPTDVPLRPAMTLTS 257 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI L+++ G + YG + TR + + + IGYADG S + Sbjct: 258 RIALVKEVPEGHSIGYGRMRTTTRPTRLGLVPIGYADGLHRAGSDRCDVLVRTAS----- 312 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI---------KLDDVALASG 351 P +G+I+MD + D+ GD + +FG DD A A+G Sbjct: 313 --GDRRAPQVGRISMDQIVIDLGADSEARPGDEVFLFGDAGGDPGGPSASTADDWAAAAG 370 Query: 352 TTNYDLLVRIGTRYAK 367 T Y++L + R + Sbjct: 371 TIPYEVLTSVSGRVTR 386 >gi|237739916|ref|ZP_04570397.1| alanine racemase [Fusobacterium sp. 2_1_31] gi|229423524|gb|EEO38571.1| alanine racemase [Fusobacterium sp. 2_1_31] Length = 354 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 154/372 (41%), Gaps = 30/372 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + L+ N VVK NAYGLG +IA L GV F + ++ Sbjct: 2 RTWVEIDKENLKYNILKLKELADNREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ +A +L + + ISS+ QL F + ++ Sbjct: 62 EEAIELQDAGIKANFLILGASFEDELVEATKRGIHTAISSIQQLRFL---VENNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA + + L L I +HL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDEAEEVINFCKTNNL-NLVGIFTHLSDSDGNTIDTKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + ++ +++S+GI K+ ++ V T ++++ Sbjct: 178 KNIVKGLDLKYIHISNSAGITNFHENILGNLVRAGIAMYSFTGNKKTPCLKNVFTIKSKV 237 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + +K VSYG L DS AV IGYADG L GG I Sbjct: 238 LFTKKVNKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYL-----------TKGGYVLI 286 Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----YD 356 Y I+G I MDMTM I L I++ D + + DI +D++ ++ Sbjct: 287 NNYRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLN-----IPELCVWE 340 Query: 357 LLVRIGTRYAKF 368 + IG R + Sbjct: 341 FMTGIGRRVKRI 352 >gi|226365649|ref|YP_002783432.1| alanine racemase [Rhodococcus opacus B4] gi|226244139|dbj|BAH54487.1| alanine racemase [Rhodococcus opacus B4] Length = 400 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 155/374 (41%), Gaps = 26/374 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N + + A AVVK + Y G +A A AG + VT+V E + Sbjct: 32 VDLDAIAHNVRILRDSARGAAMMAVVKADGYNHGAVAVARAALAAGASELGVTTVSEALT 91 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYALQVD 129 LR A + ++ +SS + G ++VD Sbjct: 92 LRRAGIDAPVLAWLHTVDADFAPAIAADVELGVSSPRHLAAVVAAARRVGTPAIVTMKVD 151 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRTLI 186 TG NR G++ E + + I SHLA AD+P Q +R I Sbjct: 152 TGLNRNGVAPDELAQVLVDLARAQAEGSVRLRGIFSHLAHADEPHHAWIDSQRDRLVDAI 211 Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEA 240 + K L++S+ L P+ F + RPGI++YG + ++ +T + Sbjct: 212 ADAKRHGLVPEVVHLSNSAATLTRPDLRFDMVRPGIAIYGLSPVPELGQFGLRPAMTLRS 271 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+ L++K AGE VSYG Q RD+ +A+ +GYADG P +LSG + Sbjct: 272 RVALVKKVAAGEGVSYGHQWVAPRDTTVALLPLGYADGLPRSLSGRF-----------EV 320 Query: 301 FIKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGP----DIKLDDVALASGTTNY 355 + P +G++ MD + D+ D + GD FG + + A T +Y Sbjct: 321 QLGAERRPGIGRVCMDQVVVDLGPDGGGVREGDTAVFFGNGDLGEPIAQEWADKLDTIHY 380 Query: 356 DLLVRIGTRYAKFY 369 +++ + R + Y Sbjct: 381 EVVTGVRGRTVRTY 394 >gi|319442957|ref|ZP_07992113.1| hypothetical protein CvarD4_14474 [Corynebacterium variabile DSM 44702] Length = 362 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 149/367 (40%), Gaps = 32/367 (8%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 M L A AVVK +AY G +A +AG + V ++ E + LR A + Sbjct: 1 MAGLVAPAGVMAVVKADAYNHGMADVARTAVDAGAAELGVATLGEALALRDAGVSAPVTA 60 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLT----FYSKLMSCGVSHPYALQVDTGFNRLGLS 138 I + + ++ I S+ L + G L VDTG +R G+S Sbjct: 61 WIWIVGEDLRGAAEQDITLGIPSLAHLEAAVTTAAGSAEAGRPLKVGLMVDTGLSRSGIS 120 Query: 139 LQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEA- 194 E + L ++ + SH A ADDP S +Q +RF I + Sbjct: 121 PTEWPAALDAAEAAVDAGLIDVTGLFSHFASADDPMSPTTDLQEKRFSARIGECRARGID 180 Query: 195 ----SLASSSGILLGPNYHFQLTRPGISLYGGTDK-INKSHPMQTVVTAEARIILIRKAL 249 +A++ L + ++ RPG+ +YG I ++ +T A+++ R Sbjct: 181 APVNHIANTPAALSRVDLRHEMVRPGVGIYGVDPCAIPSGVELRPAMTLRAKVVTTRIVE 240 Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309 GE VSYG D AV A+GYADG P +SG I G P Sbjct: 241 KGEGVSYGHHWIAPEDHRTAVVAMGYADGLPRAMSGNFG-----------VAIDGTWYPQ 289 Query: 310 LGKITMDMTMFDITDSLS------IEVGDYIQIFGP-DIKLDDVALASGTTNYDLLVRI- 361 +G++ MD + D+ + GD+ IFG + ++A A+GT +Y++L Sbjct: 290 IGRVCMDQIVVDLGPVADEGPGASVRPGDWAVIFGEGGRSVREIADAAGTIDYEILTMPR 349 Query: 362 GTRYAKF 368 G R A+ Sbjct: 350 GGRVARR 356 >gi|313900478|ref|ZP_07833971.1| alanine racemase [Clostridium sp. HGF2] gi|312954540|gb|EFR36215.1| alanine racemase [Clostridium sp. HGF2] Length = 416 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 30/381 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++L LK N + AL S + + AV+K + YG G +IA A+ + F V S E Sbjct: 39 AEVNLQQLKENTRKVRALLSKDTKLLAVLKADGYGHGAVRIAKAIEDMS-DWFAVASFYE 97 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 +LR I V + + N+ S ++ + + Sbjct: 98 ARELRDQGITTPILVFGFLDDSNIEEAAQKNITCSALSYSYALHIAELCEQKKLRLSMHI 157 Query: 127 QVDTGFNRLGLSLQE-----ALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQ 178 ++DTGF+RLG++ +E A + Q++ I +H + A + Q Sbjct: 158 KLDTGFHRLGIACEEERITEAYKEVRTLYELPQLQITGIYTHFSTAGSKALQDEAFLARQ 217 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPM 232 + F ++ H +S L P H + R G+ LYG G+D + + Sbjct: 218 YQLFCDMLHRLEEDHIDPGIRHCCNSKATLTNPEMHLDMVRVGLYLYGLGSDADIEYLKL 277 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +V +ARI IR GE + YG + IAV ++G+ADGY L D Sbjct: 278 EPIVNWKARIYAIRDVKQGEGIGYGRTFITPQPMRIAVVSLGFADGYSRCLYASDQV--- 334 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G ILGKI MD+ M DITD + V D I + G + I + + Sbjct: 335 ------YVLVHGKRTRILGKICMDVMMVDITDIPDVRVNDTITVLGSEGTQRISANLLGR 388 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +G T ++ +G R + Y Sbjct: 389 ETGGTAVEVTCGMGKRVQRVY 409 >gi|317407371|gb|EFV87336.1| catabolic alanine racemase [Achromobacter xylosoxidans C54] Length = 376 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 148/384 (38%), Gaps = 37/384 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + + ++AL +N ++ AV+K NAYG G E+ Sbjct: 3 RPISATVSVSALAHNLAAVRRHLDQTAAAASGVAPSIWAVIKANAYGHGIEQAVAGFSK- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 Q + ++E V+ R I +L G + I D + V + Sbjct: 62 -AQGLAMLDLDEAVRCREAGWGGPILLLEGFFNPSDLDIVDRYHLSVTVHQREQLDMLAR 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSS 172 L++++G NRLG S + + + ++H ACAD P Sbjct: 121 ARLSRRVDIMLKLNSGMNRLGFSPAAYPAAHERALLLQQQGVIGSLGKMTHFACADGPQG 180 Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLG------PNYHFQLTRPGISLYGGTDKI 226 QL F ++ S+ +S+ L RPGI LYG + Sbjct: 181 IT--EQLAVFNSVTHKMAAGPISVCNSAATLRFAEIAVGSEAQAHWVRPGICLYGASPFA 238 Query: 227 NKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + ++ ++ + II +++ AG+ V YG + R + + A GYADGYP Sbjct: 239 DAEAAAFGLKPAMSLRSEIIAVQELKAGDSVGYGALFRADRPMRVGIVACGYADGYPRHA 298 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IK 342 G + G ++G+++MDM + D+ + VG + ++G + Sbjct: 299 -----------ATGTPVVVAGIRTRLVGRVSMDMLIVDLDPIPAAGVGAPVSLWGEEGPS 347 Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366 +D+VALA+GT Y+LL + R Sbjct: 348 VDEVALAAGTIGYELLCALAPRVP 371 >gi|171463622|ref|YP_001797735.1| alanine racemase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193160|gb|ACB44121.1| alanine racemase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 381 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 154/376 (40%), Gaps = 31/376 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV--QDFF 61 N + I A ++N + + ++ ++ +V+K AYG A + F Sbjct: 20 NRPILASIHTAAFQHNLNRVREMAPESKIWSVIKARAYGH----CFDAALKGLISTDGFA 75 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG- 119 + +++ LR + + RI +L G E + V+ Q+ + Sbjct: 76 LLDIQDAAWLREHGWKGRILLLEGFFHENELSRAEELACDLVVHCGAQVEWLESFKGKNR 135 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQ 178 L+++TG NRLG + H ++H A AD + Q Sbjct: 136 KPFNVFLKMNTGMNRLGFKPDDYRTVFHRLHAAGYHMH--HMTHFANADQVNRIPSVGSQ 193 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQT 234 E F I +G SLA+S+ IL N RPGI LYG + + +Q Sbjct: 194 QELFNQTIEGLEGA-TSLANSAAILWHRNALGDWVRPGIMLYGVSPTGLHADIEHSNLQV 252 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ + II I+ G+ + YGG+ + I + A GYADGYP Sbjct: 253 VMQLHSEIIDIQDLQKGDRIGYGGRYEAPEAMRIGIVACGYADGYPRHAKD--------- 303 Query: 295 FLGGKGFI----KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 G ++ G + P++G+++MDM D+ + + +G +Q++G + +DDVA S Sbjct: 304 --GTPVWVANGDHGVICPLVGRVSMDMLAIDLRHAPNASIGTTVQLWGDKVPVDDVAQMS 361 Query: 351 GTTNYDLLVRIGTRYA 366 TT Y+LL + R Sbjct: 362 DTTGYELLCAVAPRVP 377 >gi|284992829|ref|YP_003411383.1| alanine racemase [Geodermatophilus obscurus DSM 43160] gi|284066074|gb|ADB77012.1| alanine racemase [Geodermatophilus obscurus DSM 43160] Length = 378 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 147/384 (38%), Gaps = 28/384 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + +DL + N ++ G AVVK + YG G A A G Sbjct: 1 MTQRARAEVVVDLDTIAANTAALRERVGRP-LMAVVKADGYGHGLVPSARAALAGGADAL 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCG 119 V +EE + LR + ++ +++ + + G Sbjct: 60 GVAVLEEALALRAAGVTVPLLSWLHTPGTDYAAALTADVEVSVNAEWALAEVVAAARATG 119 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNS 176 + L DTG +R G + + + + + SH+A AD P+ Sbjct: 120 RTAQLHLFADTGLSREGATEADWPGLVAAAARAQDDGEVAVVGLWSHMAYADAPTHPTIG 179 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKS 229 Q+ F + + G LA+S+ + P+ + + RPGI++YG + Sbjct: 180 AQVRVFEEAVAIARAAGLTGARLHLANSAATVALPDTWYDMVRPGIAVYGLDPLGGDPAA 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 H ++ +T AR L ++ AG VSYG ++ + + +GYADG P Sbjct: 240 HGLRPAMTVRARAALTKRVPAGAGVSYGHTYFPESETTLLLVPVGYADGVPRAAGNR--- 296 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDD 345 G I G++ MD + D+ D+ + GD + ++GP + D Sbjct: 297 --------APVLAAGAHRTIAGRVCMDQFVLDVGDA-EVRAGDEVVLWGPGDRGEPTAQD 347 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 A A + +Y+L+ RIG R+ + Y Sbjct: 348 WADAVDSIHYELVTRIGGRFTRRY 371 >gi|187478906|ref|YP_786930.1| alanine racemase, catabolic [Bordetella avium 197N] gi|123514360|sp|Q2KXU7|ALR_BORA1 RecName: Full=Alanine racemase gi|115423492|emb|CAJ50026.1| alanine racemase, catabolic [Bordetella avium 197N] Length = 374 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 144/383 (37%), Gaps = 37/383 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + I TAL++N + A AV+K NAYG G E+ A Sbjct: 3 RPIFALISPTALRHNLSVVRQHLNRAAVAAGGVPPSIWAVIKANAYGHGIERALRAFSE- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 Q + +EE V+ R I +L G Q+ + D I + Sbjct: 62 -AQGLAMLDIEEAVRCREAGWAGPILLLEGFFTPQDIDLLDRYHISTAVHCQEQLDMLAR 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSS 172 +++++G NRLG S Q + + ++H A AD P Sbjct: 121 ARPSHRINAMVKLNSGMNRLGFSPQAYGAAFEAAQALMRDGVLGSVGKMTHFATADGPQG 180 Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH-----FQLTRPGISLYGGTDK-- 225 Q E F+ G S+ +S+ L P RPGI LYG + Sbjct: 181 P--QWQWEVFQAATQGLPG-PVSVCNSAATLRYPELAAGPGATHWVRPGICLYGASPFSD 237 Query: 226 -INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 + ++ +T A II +++ G+ V YG ++ + V + GYADGYP Sbjct: 238 TPAAAFGLRPAMTLRAEIIGVQQVSPGQTVGYGATFAASKAMRVGVVSCGYADGYPRHC- 296 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKL 343 G + G +LG+++MDM M D+ + VG + ++G + Sbjct: 297 ----------ATGTPVTVNGVATRLLGRVSMDMMMVDLDPVPAAGVGAPVVLWGEGGPDV 346 Query: 344 DDVALASGTTNYDLLVRIGTRYA 366 D VA A GT Y+LL + R Sbjct: 347 DAVAAAGGTIGYELLTALAARVP 369 >gi|315091525|gb|EFT63501.1| alanine racemase [Propionibacterium acnes HL110PA4] Length = 352 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 80/358 (22%), Positives = 142/358 (39%), Gaps = 24/358 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIF 81 M +G+ + VK +AYG G +++ + V +V EG +L I Sbjct: 1 MRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVATVAEGQELVEAGIPLPIL 60 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQ 140 P + + + L SK GV+ + VD+G R+GL + Sbjct: 61 NPPPADPWDMDAAITSGIRLTVVDFDTLEAVSKAAVRLGVTAKIHIAVDSGMGRIGLCPE 120 Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERFRTLIS----HYKGIEAS 195 + T + K ++ + +HL +D P +++ F T +S H Sbjct: 121 RLAELTAAADRAKGVEVEGVFTHLPISDVPEGAEFTRREIDTFMTAVSLVETHRGPFPLV 180 Query: 196 LASSSGILLGPNY-HFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGEL 253 ++SG +LG + + R GI YG + + ++ + + ++ G+ Sbjct: 181 HLANSGAILGHDLGKTSMVRAGIVGYGYDPNPHADRADLHPALSWISHVTFVKTVSVGDT 240 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 + YG + + IA +GYADG LS G I+G + PI+G+I Sbjct: 241 IGYGRTWTASETTKIATVPVGYADGLSRGLSN-----------KGYVLIRGSVHPIVGRI 289 Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 MD M D+ ++ VGD + + G + DD+A GT +Y++ I R + Sbjct: 290 CMDQFMVDLGPDSNVTVGDEVVLIGTQGDETLTADDMAELLGTISYEITCAISKRVNR 347 >gi|33602247|ref|NP_889807.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50] gi|33576686|emb|CAE33763.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50] Length = 375 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 151/384 (39%), Gaps = 38/384 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + I +AL++N ++ + AV+K NAYG G E+ Sbjct: 3 RPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKANAYGHGIEQAVAGFSA- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 Q + ++E V+ R I +L G P +I+ +L + + Q + Sbjct: 62 -AQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDMLAH 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPS 171 +++++G NRLG + + + ++H ACAD P Sbjct: 121 -ARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVVGGIGKMTHFACADGPQ 179 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILL-----GPNYHFQLTRPGISLYGGTDKI 226 + Q+ F +H G + S++ + G + RPGI LYG + Sbjct: 180 G--VTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPFA 237 Query: 227 NKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + + +T + +I ++ AG V YG + R I V A GYADGYP Sbjct: 238 DAQAGAFGLIPAMTLRSELIAVQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRHA 297 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IK 342 G + G ++G+++MDM M D+ + +G + ++G D Sbjct: 298 G-----------TGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLWGEDGPS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366 +D+VA A+GT Y+LL + R Sbjct: 347 VDEVAEAAGTIGYELLCALAPRVP 370 >gi|33592350|ref|NP_879994.1| alanine racemase, catabolic [Bordetella pertussis Tohama I] gi|33571995|emb|CAE41517.1| alanine racemase, catabolic [Bordetella pertussis Tohama I] gi|332381767|gb|AEE66614.1| alanine racemase, catabolic [Bordetella pertussis CS] Length = 375 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 151/384 (39%), Gaps = 38/384 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + I +AL++N ++ + AV+K NAYG G E+ Sbjct: 3 RPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKANAYGHGIEQAVAGFSA- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 Q + ++E V+ R I +L G P +I+ +L + + Q + Sbjct: 62 -AQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDMLAH 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPS 171 +++++G NRLG + + + ++H ACAD P Sbjct: 121 -ARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVVGGIGKMTHFACADGPQ 179 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILL-----GPNYHFQLTRPGISLYGGTDKI 226 + Q+ F +H G + S++ + G + RPGI LYG + Sbjct: 180 G--VTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPFA 237 Query: 227 NKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + + +T + +I I+ AG V YG + R I V A GYADGYP Sbjct: 238 DAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRHA 297 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IK 342 G + G ++G+++MDM M D+ + +G + ++G D Sbjct: 298 G-----------TGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLWGEDGPS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366 +D+VA A+GT Y+LL + R Sbjct: 347 VDEVAEAAGTIGYELLCALAPRVP 370 >gi|116329770|ref|YP_799489.1| alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332652|ref|YP_802369.1| alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122663|gb|ABJ80556.1| Alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127519|gb|ABJ77611.1| Alanine racemase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 379 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 162/389 (41%), Gaps = 34/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++I +L NN +S + L + A++K NAYG G + +A GV Sbjct: 1 MKETASSWIEISKRSLSNNLNSFRSILRPGSTLTAILKSNAYGHGTDLMAKLCIEEGVSH 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVL-YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V S+EE +R P+ I ++ +P + K +I S P+ L S Sbjct: 61 IGVNSIEEAQSIRQIDPKIPILIMGEIQNPEKRKEALSDPNFWIIFSRPETARI--LSSL 118 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + L++DTG RLG + + + + D + +Q Sbjct: 119 NPAPKLHLKIDTGMGRLGNHGETLKYTLGELKKNGITLDGICTHFASTEDVLEHKYSLMQ 178 Query: 179 LERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI------- 226 +++F + YK + + +S+ +L + H+++ R GISLYG I Sbjct: 179 IQKFEKAVLLAESLGYKNLIRHMCASASTMLFSSAHYEMVRVGISLYGLWPSIQTRLSLN 238 Query: 227 ---NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 NK+ + +++ + RI+ I+ A + YG + + + +A+ IGY +G L Sbjct: 239 LNGNKNFQLSPILSWKTRIVHIQNHPADSYIGYGSTFQTSYPTKVAIVPIGYYEGLDRKL 298 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD--- 340 S G + G I+G+I M+MTM D+T +VG + + G D Sbjct: 299 S-----------SNGDMLVLGKRARIIGRICMNMTMLDVTHISGADVGSVVTVIGQDGEE 347 Query: 341 -IKLDDVALASGTTNYDLLVRIGTRYAKF 368 I DD+A + T NY++ RI + Sbjct: 348 LITADDIADRTHTINYEITTRISESVCRI 376 >gi|171741011|ref|ZP_02916818.1| hypothetical protein BIFDEN_00077 [Bifidobacterium dentium ATCC 27678] gi|283455601|ref|YP_003360165.1| alanine racemase [Bifidobacterium dentium Bd1] gi|171276625|gb|EDT44286.1| hypothetical protein BIFDEN_00077 [Bifidobacterium dentium ATCC 27678] gi|283102235|gb|ADB09341.1| alr Alanine racemase [Bifidobacterium dentium Bd1] Length = 452 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 101/408 (24%), Positives = 159/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL AL++N + ++ G VVK +AYG G A A G Sbjct: 24 RRRYPAQAIVDLAALRDNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQ-ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---- 112 E + LR R +L ++ G + + SV L Sbjct: 84 TWLGTAQSHEALLLRKAGIGLDRCHILTWVYNGTAVPFAELVANDIDVSVGSLGGIDGVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 EAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADA 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG +SYG D+ A+ IGYA Sbjct: 264 GYEADPAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPIGYA 323 Query: 277 DGYPLTLSGLDSEHSPS-VFLGGKGFI----KGYMVPILGKITMDMTMFDIT---DSLSI 328 DG + SG D E + V GG + + + G++ MD + D+ D+L I Sbjct: 324 DGIHRSASGFDMEGAKHVVKAGGPVRVMTAEGPRLYRVSGRVCMDQFILDLHGSADALGI 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 431 >gi|254221103|pdb|3HUR|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni Length = 395 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 36/386 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62 + + +DL A +N + + + AV+K + YGLG +A A A V Sbjct: 7 HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I+VL K+ D +++ ++P L + L + Sbjct: 67 SNLDEALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVI---TIPSLAWLQNLPDFEGTL 123 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178 +L +DTG R+G E L + +H A AD + S Q Sbjct: 124 KVSLAIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQ 183 Query: 179 LERFRTLI--SHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----- 228 L R++ L + S+A+S+ + P F RPG + G + Sbjct: 184 LRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPP 243 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ + + + I +R + +SYG +++ D +A GY DG+ + Sbjct: 244 NLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQ---- 299 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLD 344 I G +PI+G+ITMD TM + +G + + G I ++ Sbjct: 300 --------KSSVIINGKRMPIIGRITMDQTMVKLDRKYP--IGTRVTLIGKDGGEQITVE 349 Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370 +VA S T ++ + R + YT Sbjct: 350 EVANYSHTIVDEIQTTLAPRIKRIYT 375 >gi|298529139|ref|ZP_07016542.1| alanine racemase [Desulfonatronospira thiodismutans ASO3-1] gi|298510575|gb|EFI34478.1| alanine racemase [Desulfonatronospira thiodismutans ASO3-1] Length = 371 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 168/381 (44%), Gaps = 29/381 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L++ I ++++N+ ++ + AR AVVK +AYG G E+ A L+ AG F V SV Sbjct: 1 MLKVHIQTRSIEDNFAFLSRRT-TARVMAVVKADAYGHGLEETARCLHQAGADRFGVGSV 59 Query: 66 EEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHP 123 +EG +LR I+ L G P ++ +IP I S QL + + P Sbjct: 60 QEGARLRDCLDAPEIYSLLGPVSPEDYHLLARHRIIPFIHSREQLKALQEASCSFRGTIP 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLERF 182 A++++TG NRLG + + + +L ++ SHL+ AD QL+ F Sbjct: 120 VAIKLETGMNRLGFRGGDLHELLETWEKCRGLKLHMLASHLSLADSVQGRQEVLRQLKTF 179 Query: 183 RTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQ 233 + E SLA+S+ IL P H RPGISLYG + K + Sbjct: 180 EDYCRTMQARGHEFEKSLANSAAILAHPETHLDCVRPGISLYGDNPFEHTPWASKGEGLA 239 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + A ++ + G VSYG RD IAV GYAD Y LS Sbjct: 240 QAMHVRAPVLAVHHLEKGAGVSYGLCFTAPRDMRIAVIGCGYADNYSRGLSNR------- 292 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 G +G +P+LG++ M +++ D + + I G + + G + + ++A Sbjct: 293 ----GWMLYQGRRMPVLGRVCMQLSVVDASHAGDIAPGCEVYVLGGEGRQLLSAREMAGW 348 Query: 350 SGTTNYDLLVRIGTRYAKFYT 370 + +Y++ +G + Y+ Sbjct: 349 LDSISYEIFCSLGK-NPRTYS 368 >gi|294785981|ref|ZP_06751268.1| alanine racemase [Fusobacterium sp. 3_1_27] gi|294486318|gb|EFG33681.1| alanine racemase [Fusobacterium sp. 3_1_27] Length = 356 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 164/375 (43%), Gaps = 34/375 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +IA L GV+ F V ++ Sbjct: 2 RTWIEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSIEIAKILKEVGVKFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ Q L+ ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQ---LQFLVDKNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA N L L I SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVNEAEKVIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177 Query: 183 RTLISH-YKGIEASLASSSGIL--LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + +++ +E S+S + + L R GI +Y T K+ ++ + T + Sbjct: 178 KKIVNSLNLNLEYIHISNSAGITNFHNDILGNLVRLGIGMYSFTGN-KKTPYLKNIFTIK 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R++ I+K VSYG L DS AV IGYADG LS G Sbjct: 237 SRVLFIKKVNKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLS-----------KGSY 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN--- 354 I + I+G I MDMTM I + I++G+ + + DI LD++ Sbjct: 286 VLINNHRCEIIGNICMDMTMIRIPKEIENSIKIGNEVTVINADI-LDNLN-----IPELC 339 Query: 355 -YDLLVRIGTRYAKF 368 ++ + IG R + Sbjct: 340 VWEFMTGIGKRVKRI 354 >gi|313888487|ref|ZP_07822154.1| alanine racemase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845516|gb|EFR32910.1| alanine racemase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 385 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 147/381 (38%), Gaps = 31/381 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++IDL +NN + G +VVK +AY LG ++ + G+ + V Sbjct: 7 RPAWIEIDLDKFENNMKIIKDKVGEKTEVMSVVKSDAYRLGALPLSQVSLDLGINYYAVA 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SH 122 ++ E + LR + I +L + ++ I S+ ++L Sbjct: 67 TLSEALSLRKKFDEVNILILGYTPRHLYEDAIKNHITLTIYSLNDALVLNELAGNLKEEA 126 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + D+G +R+G + + K I A + Q + F Sbjct: 127 KIHIAFDSGMSRIGFMPSDEAKKEISEIFKLEKINVEGIFSHFAACETDPEFTDRQFKTF 186 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQTV 235 I + +A+S +L Y + RPGI +G +D + + ++ + Sbjct: 187 TNFIDELGELGCRFKFRHIANSHSVLFHDEYDLDMVRPGIIQFGYTDSDHLPEEFGLEEI 246 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +A+I IR+ GE V Y K RD+ + +GYAD +P LS Sbjct: 247 LSLKAQISSIREVKKGETVGYERFYKCPRDTKVVTLPLGYADAFPRILS----------- 295 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 + I G +G I MD M D TD ++GD + + G +IK+ D+ + SG Sbjct: 296 EKIEVLINGKRCKQIGLICMDQMMVDATDV-DCKIGDDVVLIGKQGDEEIKVRDICIHSG 354 Query: 352 ---TTNYDLLVRIGTRYAKFY 369 T+ + R K+Y Sbjct: 355 DCETS---FITHFNRRLPKYY 372 >gi|300173959|ref|YP_003773125.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811] gi|299888338|emb|CBL92306.1| alanine racemase [Leuconostoc gasicomitatum LMG 18811] Length = 376 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 157/378 (41%), Gaps = 27/378 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ID A++ N + +G R VVK N YG G ALY GV+DF V + Sbjct: 12 RPSWIAIDSEAIQENARIIMQYTGAKRLIGVVKANGYGFGAVATVKALYEIGVRDFAVAT 71 Query: 65 VEEGVKLR-LYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + E LR T +L G+ I+ +L P + + L KL+ G Sbjct: 72 IAEAAILRQEVTYDDFQILLLGVQDVAFVDIMVAYHLSPAVGDLSWLQQAVKLIPEGKVL 131 Query: 123 PYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +DTG R+G Q + + + QL +H A ADD + Q+E Sbjct: 132 EVQLAIDTGMGRMGAHSQSQVKEMYEFIQSSDKLQLMGAFTHFATADDNNQSYYDHQVEN 191 Query: 182 FRTLI--SHYKGIEASLASSSGILLG-PNYHFQLTRPGISLYGGT---DKINKSHPMQTV 235 F + ++ LA+S L + R G LYG + + +++V Sbjct: 192 FYKWVHGANIPEKYWHLANSGSALWHKKEINIHTIRVGSVLYGYNPGAPERDMPIKLKSV 251 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ ++RI + + AGE VSYG R +A IGYADGY ++G+ Sbjct: 252 LSLKSRIGFVHELQAGESVSYGATYTAERPQWVATLPIGYADGYLRRMTGM--------- 302 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 + I G++ ++G++TMD + + + + + G +I L++ A + Sbjct: 303 ---RVLIAGHVEHVIGRVTMDQIVISLDKKYPVN--TEVTLIGQDGDEEITLEEFAEYAK 357 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +++ +R + Y Sbjct: 358 TIPHEISTTFSSRLPRIY 375 >gi|283851833|ref|ZP_06369110.1| alanine racemase [Desulfovibrio sp. FW1012B] gi|283572749|gb|EFC20732.1| alanine racemase [Desulfovibrio sp. FW1012B] Length = 373 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 113/385 (29%), Positives = 171/385 (44%), Gaps = 32/385 (8%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +LR ++ L + N+ + L G R AV+K +AYG G + A L AG F Sbjct: 3 IAHNYLRTRVRLDHIAANYKRLAGLGG--RVLAVIKADAYGHGLLETARVLTGAGCDGFA 60 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V SV EG LR P+A I L G P + +I ++IP I QL + + Sbjct: 61 VGSVAEGAALRAAIPRAAIVSLLGPVLPEDDAMILGHSIIPFIHDFGQLERLAGRAARKR 120 Query: 121 -SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQ 178 AL+ DTG RLG + + + +++++ SHLA ADDP++ + Q Sbjct: 121 VKARVALKFDTGMARLGFVEADVPELLKRLEDMPAIEVAMVGSHLATADDPAAFAFVAEQ 180 Query: 179 LERFRTLISHYK----GIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKS---- 229 E F + + + E SL +S+GI+ + + F+ R GI+LYG + Sbjct: 181 GEGFGRICAALRRAGLAFEGSLCNSAGIMAHADRFGFETRRAGIALYGVNPFLGTDRETL 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + RI+ + AG VSYG RD +AV A GYAD Y LS Sbjct: 241 GQGLVAAMETVTRIVSVHDVAAGRSVSYGRTFTAERDMRVAVVAAGYADAYSRGLSN--- 297 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 G + G VPI+G++ M +T D+T GD I + G + + Sbjct: 298 --------AGAMCLAGKRVPIVGRVCMQLTAVDVTGIA-CAPGDVIHLLGGQGPEAVTAN 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 DVA GT Y++L G + Y Sbjct: 349 DVAGWWGTIPYEVLCLFGL-NPREY 372 >gi|73542215|ref|YP_296735.1| alanine racemase region [Ralstonia eutropha JMP134] gi|72119628|gb|AAZ61891.1| Alanine racemase region [Ralstonia eutropha JMP134] Length = 366 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 21/345 (6%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 L+ ++ AVVK NAYG G ++ PAL A F + + E V+LR I +L Sbjct: 22 RRLAPASKVWAVVKANAYGHGIARVYPAL--ASADGFALLDLHEAVQLRELGWTGPILLL 79 Query: 84 YGIHPG-QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV----DTGFNRLGLS 138 G ++ L + QL G P ++ + ++G NRLG S Sbjct: 80 EGFFDESDIALLASLRLTTAVHGEEQLRMLEIASRDGRLPPRSIDICLKLNSGMNRLGFS 139 Query: 139 LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLAS 198 + + + +SH + AD + Q FR + G + S+A+ Sbjct: 140 PESYGAAWRRLRDVAAVKSVTHMSHFSDADTQKG--VAEQAAIFRAVTRGLPG-QISIAN 196 Query: 199 SSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEARIILIRKALAGELV 254 S+ + + H R GI LYG + +Q T +RI+ ++ L G+ V Sbjct: 197 SATTMRHADCHADWVRAGIMLYGAAPSGCAADLSGTGLQAAQTLTSRILGVQDLLPGQSV 256 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314 YG TR I + A GYADGYP T S +P + + +G+++ Sbjct: 257 GYGSHYVATRRQRIGIVACGYADGYPRTSSSHADHFAP-------VRVGDRLTRTVGRVS 309 Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 MDM D+++ VG ++++G + +DDVA A+GT Y+L+ Sbjct: 310 MDMLAVDLSECPEANVGSPVELWGRHVPIDDVAAAAGTIGYELMC 354 >gi|90419483|ref|ZP_01227393.1| putative alanine racemase [Aurantimonas manganoxydans SI85-9A1] gi|90336420|gb|EAS50161.1| putative alanine racemase [Aurantimonas manganoxydans SI85-9A1] Length = 384 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 141/380 (37%), Positives = 200/380 (52%), Gaps = 16/380 (4%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 HS ++ID AL NW + A + ART A VK + YGLG + A L+ AG +DFF Sbjct: 6 HSERMPVVEIDRAALAANWALLAARNPGARTGAAVKADGYGLGAAETARTLHAAGCRDFF 65 Query: 62 VTSVEEGVKLRLYTP----------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT- 110 V EEG +R ARIFVL G+ P + D LIPV+S+ + Sbjct: 66 VAWAEEGRIVRAALDALTHPDDGTAPARIFVLQGLEPDSVSLHLDAGLIPVLSTPGDIAV 125 Query: 111 FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170 + + L + G P A+Q++TG +RLGL + + L+L++SHLA AD+P Sbjct: 126 WCNGLKAAGRRAPAAIQLETGMHRLGLDRA-DAEAAADLAASGELDLALVMSHLASADEP 184 Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 + Q RF L + + G+ SLA+S+ + LG + F LTRPGI+LYGG Sbjct: 185 TDQSARQQA-RFLELAALFPGVPRSLANSAAVFLGSEFGFDLTRPGIALYGGEAGPASRG 243 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V A I+ IR A AGE YG LTRD+ IA +GYADGY SG Sbjct: 244 VLRPVARLTAAILQIRTANAGEAAGYGAAAPLTRDTRIATVGLGYADGYHRAASG-AGVA 302 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVAL 348 V G + + G VP+LG+++MD+T+ D+TD + GD + FGP++ +D VA Sbjct: 303 VRDVRPGPQAVVAGQRVPVLGRVSMDLTLLDVTDVPDNALVPGDRAEFFGPNMSIDAVAN 362 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 A+GT Y+LL +G R + Sbjct: 363 AAGTIAYELLTGLGPRVERR 382 >gi|116491612|ref|YP_811156.1| alanine racemase [Oenococcus oeni PSU-1] gi|116092337|gb|ABJ57491.1| alanine racemase [Oenococcus oeni PSU-1] Length = 386 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 36/386 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62 + + +DL A +N + + + AV+K + YGLG +A A A V Sbjct: 6 HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I+VL K+ D +++ ++P L + L + Sbjct: 66 SNLDEALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVI---TIPSLAWLQNLPDFEGTL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178 +L +DTG R+G E L + +H A AD + S Q Sbjct: 123 KVSLAIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQ 182 Query: 179 LERFRTLI--SHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----- 228 L R++ L + S+A+S+ + P F RPG + G + Sbjct: 183 LRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPP 242 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ + + + I +R + +SYG +++ D +A GY DG+ + Sbjct: 243 NLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQ---- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLD 344 I G +PI+G+ITMD TM + +G + + G I ++ Sbjct: 299 --------KSSVIINGKRMPIIGRITMDQTMVKLDRKYP--IGTRVTLIGKDGGEQITVE 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370 +VA S T ++ + R + YT Sbjct: 349 EVANYSHTIVDEIQTTLAPRIKRIYT 374 >gi|291617673|ref|YP_003520415.1| DadB [Pantoea ananatis LMG 20103] gi|291152703|gb|ADD77287.1| DadB [Pantoea ananatis LMG 20103] Length = 356 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 153/374 (40%), Gaps = 34/374 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ID AL++N + + +R +VVK NAYG G ++ +L F + Sbjct: 2 SRPIVATIDQQALRHNLAIVRRAAPTSRVWSVVKANAYGHGIARVWESLSA--TDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G + + D + + Sbjct: 60 NMEEAILLREQGWKKPILLLEGFFHPDDLALIDRYRLTTSVHSNWQIHALANATLSAPVD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++ H + +++H A A++P V ++ Sbjct: 120 LYLKINSGMNRLGFRPEQVNGIWHKLRALENVGDITLMAHFADAENPDGIVEPLKRI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P H+ RPGI LYG + N S ++ V+T Sbjct: 177 AQATEGLDSPVSLSNSACTLWHPEAHYDWVRPGIILYGASPSGNWQDIASSGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II +++ AG+ V YG + T+ I V A GYADGYP G Sbjct: 237 SEIIGVQQLQAGDGVGYGYRYHATQPQRIGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKL------DDVALASGT 352 + G M ++G ++MDM D+T +G ++++G + + A++ Sbjct: 286 VAVDGIMTQVVGAVSMDMITVDLTPCPQAGIGSSVELWGKMSKSIRWRKQPERWAMS--- 342 Query: 353 TNYDLLVRIGTRYA 366 L+ + R Sbjct: 343 ----LMCALAPRVP 352 >gi|33596460|ref|NP_884103.1| alanine racemase, catabolic [Bordetella parapertussis 12822] gi|33566229|emb|CAE37137.1| alanine racemase, catabolic [Bordetella parapertussis] Length = 375 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 151/384 (39%), Gaps = 38/384 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR---------TAAVVKDNAYGLGCEKIAPALYNA 55 + I +AL++N ++ + AV+K NAYG G E+ Sbjct: 3 RPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVLKANAYGHGIEQAVAGFSA- 61 Query: 56 GVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 Q + ++E V+ R I +L G P +I+ +L + + Q + Sbjct: 62 -AQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDMLAH 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPS 171 +++++G NRLG + + + ++H ACAD P Sbjct: 121 -ARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVVGGIGKMTHFACADGPQ 179 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILL-----GPNYHFQLTRPGISLYGGTDKI 226 + Q+ F +H G + S++ + G + RPGI LYG + Sbjct: 180 G--VTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPFA 237 Query: 227 NKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + + +T + +I I+ AG V YG + R I V A GYADGYP Sbjct: 238 DAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRHA 297 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IK 342 G + G ++G+++MDM M D+ + +G + ++G D Sbjct: 298 G-----------TGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLWGEDGPS 346 Query: 343 LDDVALASGTTNYDLLVRIGTRYA 366 +D+VA A+GT Y+LL + R Sbjct: 347 VDEVAEAAGTIGYELLCALAPRVP 370 >gi|212716821|ref|ZP_03324949.1| hypothetical protein BIFCAT_01760 [Bifidobacterium catenulatum DSM 16992] gi|212660106|gb|EEB20681.1| hypothetical protein BIFCAT_01760 [Bifidobacterium catenulatum DSM 16992] Length = 524 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 101/408 (24%), Positives = 160/408 (39%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +D+ AL+NN + ++ G VVK +AYG G A A G Sbjct: 96 QKQYPAQAIVDMAALRNNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 155 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G+ +++I + I V S Sbjct: 156 TWLGTAQSHEALLLRKAGIGPDRCHILTWVYNGMAVPFDELIDNDIDISVGSLPGIDGVA 215 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 216 AAARRLGKTARVHVKVDSGFGRNGFTPATFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 275 Query: 170 PSSH----VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + LA+++ L P HF+LTRPGI LY Sbjct: 276 PDVPEFVASTDRQVENFKDFTRRMEVAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLY 335 Query: 221 GGTDKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG +SYG D+ A+ +GYA Sbjct: 336 GYEADPAMGTPGTYDLTPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPVGYA 395 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDSLS---I 328 DG + SG D E + V GG + + + G++ MD M D+ S + Sbjct: 396 DGIHRSASGFDMEGAKHVIKPGGPVRVMTTEGPRLYRVSGRVCMDQFMLDLHGSAEKLGV 455 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +Q+FGP + DD A+GT +Y++ + R + Y Sbjct: 456 HEGDTVQLFGPGRGEDYAEPTADDWGRAAGTISYEIFTCLCNRIPRLY 503 >gi|239906401|ref|YP_002953142.1| alanine racemase [Desulfovibrio magneticus RS-1] gi|239796267|dbj|BAH75256.1| alanine racemase [Desulfovibrio magneticus RS-1] Length = 374 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 109/376 (28%), Positives = 163/376 (43%), Gaps = 30/376 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + +LR +I + N+ + + + +V+K +AYG G + A AL AG + F V Sbjct: 5 HNYLRTRIRTENIVANYTRLR--AQGGQVVSVIKADAYGHGLLETATALAGAGCESFAVG 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 S EG LR A I L G P E +I + NL+P + QL + G Sbjct: 63 SAAEGAALRDAGCTAEILSLLGPVLPEDELLIIEKNLVPFMHDFDQLARLAVACTRLGRV 122 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQLE 180 AL+ DTG RLG +A ++ ++ SHLA ADDP + + Q Sbjct: 123 AKVALKFDTGMARLGFVEADAPKLAEMLCASPCIEVVMVSSHLATADDPGAFEFVAEQGA 182 Query: 181 RFRTLISHYKG----IEASLASSSGILLGPNYH-FQLTRPGISLYGGTDKINKS-----H 230 RF + + ASL +S+GIL F R GI+LYG + H Sbjct: 183 RFARICQALRHGGLTFRASLCNSAGILAHAGAIGFDARRAGIALYGVNPFAGSAREALGH 242 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + + RI+ + G +SYG RD +A+ A GYAD Y LS Sbjct: 243 GLLPAMETVTRIVSVHDLPRGASISYGRTYVAERDMRVAIVAAGYADAYSRGLSN----- 297 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 G + G VPILG++ M +T D++ ++ GD I + G + + DD+ Sbjct: 298 ------KGFMCLAGRRVPILGRVCMQLTAVDVSGLDAVRPGDAIHLLGGEGPGAVTADDL 351 Query: 347 ALASGTTNYDLLVRIG 362 AL GT Y++ +G Sbjct: 352 ALWWGTIPYEVFCLLG 367 >gi|306823362|ref|ZP_07456737.1| alanine racemase [Bifidobacterium dentium ATCC 27679] gi|304553069|gb|EFM40981.1| alanine racemase [Bifidobacterium dentium ATCC 27679] Length = 452 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 99/408 (24%), Positives = 159/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL AL++N + ++ G VVK +AYG G A A G Sbjct: 24 RRRYPAQAIVDLAALRDNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G ++++ + + V S Sbjct: 84 TWLGTAQSHEALLLRKAGIGLDRCHILTWVYNGTAVPFDELVANDIDVSVGSLGGIDGVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 EAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADA 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG +SYG D+ A+ IGYA Sbjct: 264 GYEADPAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPTDTSTAIVPIGYA 323 Query: 277 DGYPLTLSGLDSEHSPS-VFLGGKGFI----KGYMVPILGKITMDMTMFDIT---DSLSI 328 DG + SG D E + V GG + + + G++ MD + D+ D+L I Sbjct: 324 DGIHRSASGFDMEGAKHVVKAGGPVRVMTVEGPRLYRVSGRVCMDQFILDLHGSADALGI 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 431 >gi|309777378|ref|ZP_07672339.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53] gi|308914919|gb|EFP60698.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53] Length = 398 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 140/381 (36%), Gaps = 30/381 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++L L N + AL + +V+K + YG G ++A + + F V S E Sbjct: 21 AQVNLQQLLENTKKVKALLKPQTKLLSVLKADGYGHGAVQVARTIEDES-DWFAVASFYE 79 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 +LR + I V + + ++ S + + + Sbjct: 80 AKELREHGITKPILVFGFLDDSHVEEAVQRDITCSALSYEYAMHLAHLCEQKKLRLSMHI 139 Query: 127 QVDTGFNRLGLSLQE--------ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++DTGF+RLG+ E + + + + + S Q Sbjct: 140 KLDTGFHRLGIDCDENRLQEAYEEVRQLYETEALHITGIYTHFSTAGSKVAQDEAFLKRQ 199 Query: 179 LERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPM 232 + F ++ +S L P H + R G+ LYG G+D + + Sbjct: 200 YQLFCEILQCLKEDQIDPGIRHCCNSKATLTNPEMHLDMVRVGLYLYGLGSDADIEYLKL 259 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +V +ARI IR+ GE + Y + I V ++G+ADGY L Sbjct: 260 KPIVNWKARIYAIREVAQGEGIGYSRTFITPKPMRIGVVSLGFADGYARCL--------- 310 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + G ILGKI MD+ M D+TD V D + + G I + + Sbjct: 311 YASNKVYVLVHGKKTRILGKICMDVMMIDLTDIPEAVVNDTVTVLGCDGEQHISANLLGK 370 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 +G T ++ +G R + Y Sbjct: 371 ETGGTAVEITCGMGKRVKRVY 391 >gi|239918156|ref|YP_002957714.1| alanine racemase [Micrococcus luteus NCTC 2665] gi|281415657|ref|ZP_06247399.1| alanine racemase [Micrococcus luteus NCTC 2665] gi|239839363|gb|ACS31160.1| alanine racemase [Micrococcus luteus NCTC 2665] Length = 401 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 155/386 (40%), Gaps = 39/386 (10%) Query: 9 LKIDLTALKNNWHSMN---ALSGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++IDL A+++N + +R AVVK +AYG G +A A AG V Sbjct: 15 VRIDLAAVRHNVGVLRERIRRPDGSRPLLTAVVKADAYGHGAVAVARAAAAAGADRLGVA 74 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT--------NLIPVISSVPQLTFYSKL 115 V E + LR + + + + + Sbjct: 75 HVREALALRAAGVPLPVLAWLHTGATDFAAAVEAEVTLGVSGWDLDAAADAVRGLRARGG 134 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172 L+ DTG R G + + F + + L ++ + SHL AD+P Sbjct: 135 AGPEARAVLHLKADTGLGRHGCTPERWPAFVARAAELEAAGLVRVEGVFSHLGVADEPDR 194 Query: 173 HV-NSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226 + QL RF + + + LA++ L P+ H + R G+ LYG + Sbjct: 195 AAETTAQLLRFERMAAEAAETLGHPLLRHLANTPATLARPDTHLDMVRVGLGLYGLSPFA 254 Query: 227 N---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 ++ ++ + ++ AG+ VSYG + + + + +GYADG P Sbjct: 255 EVTAAELGLRPAMSLVTVLANVKAVPAGQGVSYGFRHVTAEPTTLGLVPVGYADGVPR-- 312 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DI 341 V G + + G VP++G+I MD + D+ + GD +++FGP I Sbjct: 313 ----------VVEGTRVHVGGRTVPVVGRIAMDQFVVDLGPDAADAPGDAVELFGPASGI 362 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367 +++ A A+GT NY+L+ RIG R + Sbjct: 363 PVEEWAAAAGTINYELVTRIGGRVDR 388 >gi|238026883|ref|YP_002911114.1| alanine racemase [Burkholderia glumae BGR1] gi|237876077|gb|ACR28410.1| Alanine racemase [Burkholderia glumae BGR1] Length = 356 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 139/344 (40%), Gaps = 20/344 (5%) Query: 27 SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI 86 + ++ AVVK NAYG G + P L G F + V+E V+LR I +L G Sbjct: 25 APRSKVWAVVKANAYGHGLARAFPGLR--GTDGFGLLDVDEAVRLRELGWAGPILLLEGF 82 Query: 87 HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 + + D + + L++++G NRLG S+ + Sbjct: 83 FRSTDVDVIDRYSLTTALHNDDQMRMLETARLSKPVNILLKMNSGMNRLGYSVDKYRAAW 142 Query: 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGP 206 + +++H A AD + Q+ F G LA+S+ ++ Sbjct: 143 ERARTCPGIGQITLMTHFADADGERG--VAAQMAAFERGAEGIAGAR-CLANSAAVMWHA 199 Query: 207 NYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262 H RPGI LYG + +Q +T + +I ++ AG+ V YGG Sbjct: 200 QTHHDWVRPGILLYGASPSGRAADIADAGLQPAMTLASELIAVQSIKAGDAVGYGGAFVA 259 Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322 T+ I V A GYADGYP G + G I+G+++MDM D+ Sbjct: 260 TQAMRIGVVACGYADGYPR-----------VAPEGTPVLVDGVRTRIVGRVSMDMITVDL 308 Query: 323 TDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 T +G ++++G + +DDVA T Y+L+ + R Sbjct: 309 TPVPQAGIGARVELWGRALPVDDVAAHCATVGYELMCAVAQRVP 352 >gi|126640203|ref|YP_001083187.1| alanine racemase 2 PLP-binding, catabolic [Acinetobacter baumannii ATCC 17978] Length = 343 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 134/350 (38%), Gaps = 26/350 (7%) Query: 28 GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87 N++ AVVK NAYG G E++ A F + ++E ++R I +L GI Sbjct: 2 PNSKVFAVVKANAYGHGIERVYEAFKA--ADGFALLDLDEAKRIRALGWTGPILLLEGIF 59 Query: 88 -PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 P L I S Q+ + + L++++G NRLG Q + Sbjct: 60 SPQDLFDCVQYQLSFTIHSEAQIEWVEQH-PYPAQFDVFLKMNSGMNRLGFKPQHYVQAW 118 Query: 147 HNSFNKKLGQLSLIISHLACADD--PSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204 N + H + AD Q+ F ++ G + S++ + Sbjct: 119 ERLNNLANVAKITHMMHFSDADGDRFGQQGIDYQITAFEEIVKDLPGERSVSNSAAILRY 178 Query: 205 GPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQK 260 R GI LYG + +Q ++ + II ++ E V YG Sbjct: 179 QDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMSLRSEIISVQHLEPNESVGYGSNF 238 Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320 + I + A GYADGY G + +G+++MDM Sbjct: 239 VAEQPMTIGIVACGYADGYQRI-----------SPTGTPVLVDSVRTRTVGRVSMDMLAV 287 Query: 321 DITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNYDLLVRIGTRY 365 D+T S +VG + ++G + +DDVA++SGT Y+L+ + R Sbjct: 288 DLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGTVGYELMCAVTARV 337 >gi|225350823|ref|ZP_03741846.1| hypothetical protein BIFPSEUDO_02397 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158279|gb|EEG71521.1| hypothetical protein BIFPSEUDO_02397 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 527 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 100/408 (24%), Positives = 159/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +D+ AL+NN + ++ G VVK +AYG G A A G Sbjct: 99 QKQYPAQAIVDMAALRNNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 158 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G+ +++I + I V S Sbjct: 159 TWLGTAQSHEALLLRKAGIGPDRCHILTWVYNGMAVPFDELIDNDIDISVGSLPGIDGVA 218 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 219 AAARRLGKTARVHVKVDSGFGRNGFTPATFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 278 Query: 170 PSSH----VNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + LA+++ L HF+LTRPGI LY Sbjct: 279 PDVPEFVASTDRQIENFKDFTRRMEQAGIAPEIRHLANTAATLSRSEIHFELTRPGIGLY 338 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG +SYG D+ A+ +GYA Sbjct: 339 GYEADPAMGTPGTYGLTPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPVGYA 398 Query: 277 DGYPLTLSGLDSEHSPS-VFLGGKGFI----KGYMVPILGKITMDMTMFDITDSLS---I 328 DG + SG D E + V GG + + + G++ MD M D+ S + Sbjct: 399 DGIHRSASGFDMEGAKHVVKPGGPVRVMTTEGPRLYRVSGRVCMDQFMLDLHGSAEKLGV 458 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +Q+FGP + DD A+GT +Y++ + R + Y Sbjct: 459 HEGDTVQLFGPGRGEDYAEPTADDWGRAAGTISYEIFTCLCNRIPRLY 506 >gi|255264281|ref|ZP_05343623.1| alanine racemase [Thalassiobium sp. R2A62] gi|255106616|gb|EET49290.1| alanine racemase [Thalassiobium sp. R2A62] Length = 345 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 194/362 (53%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL+A+ NW +++ +S + TAAVVK N YGLG ++A AL AG + FFV + EE Sbjct: 6 LTIDLSAVIANWKALDQIS-TSETAAVVKANGYGLGSRRVARALARAGARKFFVATAEEA 64 Query: 69 VKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R + I++ G G +I D LIP+++S+ Q+ + +HP+ +Q Sbjct: 65 ANVRNVLGDEHEIYIFAGHMSGDTDMISDLGLIPLLNSLDQMV---MHLEALPNHPFGVQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG+ E + ++ LI+SHLACAD+P N++QL FR++ Sbjct: 122 LDTGMNRLGMEPAEWGAVRDMALSQ---NPKLIMSHLACADEPDHTQNAMQLTSFRSMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ GILLG +YHF LTRPG+ LYGG N VV + +I +R Sbjct: 179 GVS-VPRSLAATGGILLGSDYHFDLTRPGVGLYGGAPFANAK----PVVQLDIPVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R S IA + GYADG +SG + + +G Sbjct: 234 VAVGEAVGYGASWVAERPSKIATISAGYADGLIRAMSGQATL-----------WHEGIPC 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P+ G+++MD+ D+TD Y+ I P+ +DD+A +GT Y++L +G RY++ Sbjct: 283 PLAGRVSMDLLTVDVTDLPIPPR--YLSILCPEQSVDDLAAVAGTIGYEILTSLGGRYSR 340 Query: 368 FY 369 + Sbjct: 341 RF 342 >gi|303246677|ref|ZP_07332955.1| alanine racemase [Desulfovibrio fructosovorans JJ] gi|302492017|gb|EFL51895.1| alanine racemase [Desulfovibrio fructosovorans JJ] Length = 373 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 104/385 (27%), Positives = 167/385 (43%), Gaps = 32/385 (8%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +LR ++ L + N+ + + G+ AV+K +AYG G + A AL AG F Sbjct: 3 IAHNYLRTRVRLDNIVANYKHLCSFGGH--VLAVIKADAYGHGLVETARALAGAGCDAFA 60 Query: 62 VTSVEEGVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CG 119 + SV EG LR A + ++ + P + ++ D ++ P I QL + L + G Sbjct: 61 IGSVAEGAALRQSGCAGAIVSLVGPVLPEDDAMVLDFDVTPFIHDFDQLARLAALAAGQG 120 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-HVNSVQ 178 AL+ DTG RLG + ++ + SHLA ADDP++ Q Sbjct: 121 KKARVALKFDTGMARLGFCECDVPHLLETLRGMPAIEVVMASSHLATADDPNAFDFVGEQ 180 Query: 179 LERFRTLISHYKG----IEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---- 229 +F + + +EASL +S+GIL ++ F+ R GI+LYG + Sbjct: 181 GSKFARVCQGLRDGGLTLEASLCNSAGILAHATDFGFEARRAGIALYGVNPFAGTAREPL 240 Query: 230 -HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + + RI+ + +G +SYG RD +A+ A GYAD Y LS Sbjct: 241 GAGLVPAMETVTRIVSVHDLASGCSISYGRTYTAERDMRVAIVAAGYADAYSRGLSNR-- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLD 344 G + G V I+G++ M +T DIT GD I + G + I + Sbjct: 299 ---------GYMCLAGKRVAIVGRVCMQLTAVDITGV-DAAPGDVIHLLGGEGLGAITAE 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFY 369 D+A T Y++ G + Y Sbjct: 349 DLATWWETIPYEVFCLFGL-NPREY 372 >gi|289706579|ref|ZP_06502929.1| alanine racemase [Micrococcus luteus SK58] gi|289556714|gb|EFD50055.1| alanine racemase [Micrococcus luteus SK58] Length = 401 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 155/386 (40%), Gaps = 39/386 (10%) Query: 9 LKIDLTALKNNWHSMNAL---SGNAR--TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDL A+++N + +R AVVK +AYG G +A A AG V Sbjct: 15 ARIDLAAVRHNVGVLQERIRCPDGSRPLLTAVVKADAYGHGAVAVARAAAAAGADRLGVA 74 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT--------NLIPVISSVPQLTFYSKL 115 V E + LR + + + + ++ Sbjct: 75 HVREALALRAAGVRLPVLAWLHTGATDFAAAVEAEVTLGVSGWDLDAVADAVCGLRGRGG 134 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSS 172 L+ DTG R G + F + + L ++ + SHL AD+P Sbjct: 135 AGPEARAVLHLKADTGLGRHGCPPERWPAFVERAAELEAAGLVRVEGVFSHLGVADEPDR 194 Query: 173 HV-NSVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226 + QL RF + + + LA++ L P+ H + R G+ LYG + Sbjct: 195 AAETTAQLLRFERMAAEAAETLGHPLLRHLANTPATLSRPDTHLDMVRVGLGLYGLSPFA 254 Query: 227 N---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + ++ ++ + ++ AG+ VSYG + + + + +GYADG P Sbjct: 255 DVTAAELGLRPAMSLVTVLANVKAVPAGQGVSYGFRHVTAEPTTLGLVPVGYADGVPR-- 312 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP--DI 341 V G + + G VP++G+I MD + D+ + GD +++FGP I Sbjct: 313 ----------VVEGTRVHVGGRTVPVVGRIAMDQFVVDLGPDATDAPGDAVELFGPASGI 362 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367 +++ A A+GT NY+L+ RIG R + Sbjct: 363 PVEEWAAAAGTINYELVTRIGGRVDR 388 >gi|94269682|ref|ZP_01291535.1| Alanine racemase region [delta proteobacterium MLMS-1] gi|93451122|gb|EAT02055.1| Alanine racemase region [delta proteobacterium MLMS-1] Length = 378 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 110/378 (29%), Positives = 157/378 (41%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ID AL++N+ + L S + AVVK +AYG G A A AG F V +VEE Sbjct: 8 AVIDRGALRHNYRLLRRLLSPDVGIMAVVKADAYGHGLVPSATAFAVAGAACFGVATVEE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYAL 126 GV LR + I VL G+ P NL PV+ S+ G L Sbjct: 68 GVALRQAGIEGEIVVLLGLGPEGVVEAVSRNLSPVVFDSAIPAALSRQAVAGNREVGVHL 127 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +VD G RLGL+ AL +L+ ++SH AD + + R I Sbjct: 128 KVDLGMGRLGLAPAAALQLAAEIHRLPGLRLAGLLSHFPLADQREAAAACRRQWRQLAAI 187 Query: 187 SHYKG------IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT-----V 235 LA+S+G+L L RPG+SLYG + M Sbjct: 188 GEEVAALGGGRPRLHLANSAGLLRFAEARGDLVRPGLSLYGYSPLDFPVAGMDWAELRPA 247 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++RI+ I++ AG +SYG + T + +AV +GYADGYP +SG Sbjct: 248 MALKSRIMQIKELPAGSGISYGHRFVTTGPTRLAVIPLGYADGYPRGVSGRAL------- 300 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 I G VP+ G I M+ + +I + VGD + G I ++A Sbjct: 301 ----VLIGGKRVPLRGTICMNACLAEIDAVPAARVGDEVVFMGRQGEEVIDAAEIAGWHQ 356 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y++L R G + Y Sbjct: 357 TIPYEILCRFGAANKREY 374 >gi|118472399|ref|YP_885954.1| alanine racemase [Mycobacterium smegmatis str. MC2 155] gi|3913029|sp|P94967|ALR_MYCSM RecName: Full=Alanine racemase gi|166969419|sp|A0QSR6|ALR_MYCS2 RecName: Full=Alanine racemase gi|1813550|gb|AAC45589.1| D-alanine racemase [Mycobacterium smegmatis] gi|118173686|gb|ABK74582.1| alanine racemase [Mycobacterium smegmatis str. MC2 155] Length = 389 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 162/378 (42%), Gaps = 26/378 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL A+ +N + L+G+A AVVK +AYG G +A AG V ++ Sbjct: 16 AQTVIDLGAIDHNVRVLRELAGSADVMAVVKADAYGHGALPVARTALAAGAAALGVATIP 75 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E + LR A + ++ +SS QL + G + Sbjct: 76 EALALREGGITAPVLAWLHPPGTDFAPAIAADVEVAVSSRRQLEQVTAAAAEVGRTATVT 135 Query: 126 LQVDTGFNR---LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 ++VDTG +R E LD + ++ ++SHL DDP + N +Q +R Sbjct: 136 VKVDTGLSRNGVGAADYPEVLDVLRRAQADGAIRVRGLMSHLVHGDDPENPFNGLQGQRL 195 Query: 183 RTL--ISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVV 236 + + G++ L +S + P+ F++ RPGISLYG + + ++ + Sbjct: 196 ADMRVYAREHGVDYEVAHLCNSPAAMTRPDLAFEMVRPGISLYGLSPIPERGDMGLRPAM 255 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + + L+R AG+ VSYG + RD+ + + IGYADG LSG Sbjct: 256 TLKCPVALVRSVHAGDGVSYGHRWVADRDTTLGLLPIGYADGVYRALSGRID-------- 307 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGP----DIKLDDVALASG 351 IKG +G+I MD + D+ + + VGD +FGP + D A Sbjct: 308 ---VLIKGRRRRAVGRICMDQFVVDLGPDADDVAVGDDAILFGPGANGEPTAQDWAELLD 364 Query: 352 TTNYDLLVRIGTRYAKFY 369 T +Y+++ R + Y Sbjct: 365 TIHYEVVTSPRGRVTRTY 382 >gi|297192661|ref|ZP_06910059.1| alanine racemase [Streptomyces pristinaespiralis ATCC 25486] gi|297151457|gb|EFH31178.1| alanine racemase [Streptomyces pristinaespiralis ATCC 25486] Length = 369 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 149/351 (42%), Gaps = 29/351 (8%) Query: 35 VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94 VVK +AYG G A A AG + E + LR ++R+ G + Sbjct: 16 VVKSDAYGHGMVPCARAALAAGATWLGTATPHEALALRAAGVESRVMCWLWTPGGPWREG 75 Query: 95 FDTNLIPVISSVPQLTFY-SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT---HNSF 150 + +L +S + L + + G L+ DTG R G + + + Sbjct: 76 IEADLDMSLSGMWALEEVTAAAKAAGRPARVQLKADTGLGRNGCQPADWPELVAAARTAE 135 Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLG 205 + L +++ + SH ACAD+P + QL FR ++ H + +A+S L Sbjct: 136 DDGLVRVTGLWSHFACADEPGHPSIAAQLAVFRDMVDHAEKAGIDPEVRHMANSPATLTV 195 Query: 206 PNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261 P HF L R GI++YG + ++ V+T A + L++ AG VSYG Sbjct: 196 PESHFDLVRTGIAMYGISPAPELGTPADFGLRPVMTLAASVALVKHVPAGHGVSYGHHYV 255 Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 ++ + + +GYADG P SG G + G + G++ MD + D Sbjct: 256 TDDETTLGLIPVGYADGIPRHASG-----------KGPVLVAGEWRRVAGRVAMDQFVVD 304 Query: 322 ITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 + + ++ G +FGP + +D A A+ T Y+++ RIGTR + Sbjct: 305 LGGT-TVPEGTEAILFGPGDRGEPTAEDWAQAADTIAYEIVTRIGTRVPRV 354 >gi|306820851|ref|ZP_07454474.1| alanine racemase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551123|gb|EFM39091.1| alanine racemase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 371 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 163/380 (42%), Gaps = 23/380 (6%) Query: 1 MH-SNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 MH S+ +I L+ + +N + S AVVK +AYG G +++ + V Sbjct: 2 MHISSNRAVARISLSNILHNINEFKKCKSKKLNICAVVKADAYGHGSVEVSKFIEQY-VD 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 F V++ +E ++LR + I +L + + + + +++ + ++ + +K+ Sbjct: 61 YFAVSTGDEAIELRNSQIKKPILILGYVFDNEVENLIRSDVEFTVYNIKIASTINKIAKK 120 Query: 118 CGVSHPYALQVDTGFNRLGLSLQE-ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +++DTG +R+G Q+ ++ N ++ SH + A++ + +N Sbjct: 121 NNLMAKVHIKLDTGMSRIGFLSQDNYVEEIKTVNNLSNIRIVGCFSHFSNAEETKNVINE 180 Query: 177 VQLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSH 230 VQ E F+ + + S+S NY + R GI +YG + D ++ Sbjct: 181 VQYELFQMMCKKIESENIDLGIKHISNSAASEKNNYDLDMVRLGIGMYGYSYNDVKDEKL 240 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + E+ I I+ G VSY G+ L D IA IGYADG +LS + + Sbjct: 241 DLKPAMKLESLISNIKLLKKGCKVSYSGKYTLEEDEWIATIPIGYADGISRSLSCKNFDV 300 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349 G +G I MD M + + +G + IFG + ++A Sbjct: 301 ---------VLDNGIKGISVGNICMDQMMIKLPQ--EVAIGTKVNIFGYDNDSGYNIAKL 349 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 + T Y+++ I R + Y Sbjct: 350 ADTIIYEIVCGINKRVKREY 369 >gi|192360177|ref|YP_001981190.1| alanine racemase [Cellvibrio japonicus Ueda107] gi|190686342|gb|ACE84020.1| alanine racemase [Cellvibrio japonicus Ueda107] Length = 379 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 117/378 (30%), Positives = 182/378 (48%), Gaps = 22/378 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M ++ + L IDL A+ NWH + ++ + AAVVK NAYGLG + AL G Sbjct: 13 MITSSGI-LTIDLHAICANWHFLKNQVAPHVDVAAVVKANAYGLGAVPVVRALRKEGCTT 71 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 FF + EE + L VL G+ G E + L PV+ S+ + ++ +C Sbjct: 72 FFFATKEEALASGLNGEHCLKIVLSGVRSGDEPFFVEGQLTPVLYSLADVQRWNAYAKNC 131 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 P L+VDTG R+G+S++E F + + ++SHLACAD PS N Q Sbjct: 132 CKRLPCILKVDTGMTRMGMSIEELEAFCEAHASIHI-APLFLMSHLACADTPSHPANQRQ 190 Query: 179 LERFRTLIS----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 L+ F+ + + I+ASLA+S+GILLG ++HF L RPG +LYG + ++ Sbjct: 191 LQLFKQALDIAQVRFPEIKASLANSAGILLGADWHFDLVRPGAALYGINPVSGIPNLLKP 250 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+T ++ IR V Y S +AV A GYADG TL Sbjct: 251 VITLSLPVLQIRSLQHDAYVGYSATHFAKAGSRLAVVAGGYADGIHRTLGFKPLAQ---- 306 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGPDIKLDDVALASG 351 G +G+++MD +FDI+ +VGDY+++ + L+ + + Sbjct: 307 -------FNGMAFEAVGRVSMDSCVFDISQCPENRLPQVGDYLEVVNESLSLNFLMERNA 359 Query: 352 TTNYDLLVRIGTRYAKFY 369 + Y++L +GTR+ + Y Sbjct: 360 SLGYEVLNSLGTRFHRIY 377 >gi|170016499|ref|YP_001727418.1| alanine racemase [Leuconostoc citreum KM20] gi|169803356|gb|ACA81974.1| Alanine racemase [Leuconostoc citreum KM20] Length = 370 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 78/375 (20%), Positives = 150/375 (40%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++I ALKNN + +SG + VK NAYGLG A A GV V Sbjct: 7 RPTQIEISQKALKNNVAVVKRVSGAEKIFLAVKSNAYGLGLIPTAKAAVAGGVYGLAVAI 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR A I +L +++ +++ + S+ L ++ ++ Sbjct: 67 IDEALALRHERITAPILILGISPAEYAELMAVQHIMATVVSLDWLQEAAQYLTGEQRLHV 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL--GQLSLIISHLACADDPSSHVNSVQLERF 182 +L VDTG R+G +++L + + +H A +D + ++QL+R+ Sbjct: 127 SLGVDTGMGRIGFRDRQSLSEAIDYVQAHRDIFDYVGLATHFAESDSADTDYFNMQLQRW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVT 237 L E S + + ++ R G LYG + + V+ Sbjct: 187 HKLTDGLPEPEYYHVANSGAAMYHANEVPHEVIRVGTVLYGVEPSRGELWDGRELAPVMA 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + +++ AGE +SY + + + I IGY DG+ ++G Sbjct: 247 LRSEMNFVKELPAGEGISYSHKYTTSENEWIGTVPIGYGDGWLRKMTGF----------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G PI+G++ MD M + + G + + G D ++DVA + Sbjct: 296 -HVIVDGQYAPIVGQVAMDQLMIRLPHEYPV--GTKVTLIGKDGGLENTIEDVAQHADLA 352 Query: 354 NYDLLVRIGTRYAKF 368 ++++ + R + Sbjct: 353 PWEIMTGMQDRLHRI 367 >gi|120603074|ref|YP_967474.1| alanine racemase [Desulfovibrio vulgaris DP4] gi|254802362|sp|A1VF31|ALR_DESVV RecName: Full=Alanine racemase gi|120563303|gb|ABM29047.1| alanine racemase [Desulfovibrio vulgaris DP4] Length = 376 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 162/375 (43%), Gaps = 28/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + + L ++ N+ + ++ R V+K +AYG G E + AL G ++ V +V EG Sbjct: 10 VVVSLQSIIANYRRIRTVAQ--RPMPVIKSDAYGHGLEAVGMALEAEGARECAVGTVGEG 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYALQ 127 KLR A I L G ++ + ++ I + L + + AL+ Sbjct: 68 AKLRKAGFGADIVALLGALDREDAQLAASSGIIPTVLDIAGLERLAAQGTTERPVRVALK 127 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186 DTG RLG + + + + +SHLA ADDP S Q F ++ Sbjct: 128 FDTGMARLGFTEHDVSALCERLRTLPSVRPVMAVSHLAVADDPTQSAFTMAQGAAFARIM 187 Query: 187 S----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-----TVVT 237 + ++ I SL++S+ L P H+ + RPGI+LYG + ++ Sbjct: 188 AGLRSNFPDIMGSLSNSAATLAHPQLHWDVQRPGIALYGSNPLRGTALARHGEGLLPAMS 247 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ + AG +SYG T+D+ +A+ A GYAD Y LSG + Sbjct: 248 VSVPVLQVHPLPAGRSISYGRTYTATKDATVAIIAAGYADNYSRALSGRGVAVA------ 301 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G VP+LG++ M T D+TD I GD + + G + D++A GT Sbjct: 302 -----GGRRVPVLGRVCMQTTAIDVTDVPGIATGDRVWLLGGPGPATVSADELADLWGTI 356 Query: 354 NYDLLVRIGTRYAKF 368 +Y++L +G + Sbjct: 357 SYEVLCLLGMNPRRH 371 >gi|296110973|ref|YP_003621354.1| alanine racemase [Leuconostoc kimchii IMSNU 11154] gi|295832504|gb|ADG40385.1| alanine racemase [Leuconostoc kimchii IMSNU 11154] Length = 370 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++I ALK+N + SG + VK NAYGLG + A GV V Sbjct: 7 RPTQIEISKQALKHNTEVVKKTSGADKIFLAVKSNAYGLGLIPTSKAAVAGGVYGLAVAI 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR A I +L +++ +++ + S+ L ++ +S Sbjct: 67 IDEALALRHERVTAPILILGISPAKYAELMAVQHILTTVVSLSWLKEAAQYLSGEQRLHV 126 Query: 125 ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +L VDTG R+G +E A + NK+L + +H A +D ++ +QL+R+ Sbjct: 127 SLGVDTGMGRIGFRDRESLAEAIAYLQENKQLFDYVGLATHFAESDSSNNDYFYMQLKRW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 + E S + + ++ R G LYG + +Q V+ Sbjct: 187 HDMTDGLPEPEFYHVANSGAAMYHADEVPHEVVRVGTVLYGVEPSRGELADGKNLQPVMA 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + ++ AGE +SY + T D I IGY DG+ ++G Sbjct: 247 LRSEMNFVKLLPAGEGISYSHKYTTTGDEWIGTVPIGYGDGWLRKMTGF----------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 K + G+ PI+G++ MD M + + G + G D ++DVA +G Sbjct: 296 -KVIVDGHYAPIVGQVAMDQLMIRLPRQYPV--GTKVTFIGKDGGLENTIEDVAQHAGLA 352 Query: 354 NYDLLVRIGTRYAKF 368 ++++ + R + Sbjct: 353 PWEIMTGMQDRLHRV 367 >gi|294782996|ref|ZP_06748320.1| alanine racemase [Fusobacterium sp. 1_1_41FAA] gi|294479874|gb|EFG27651.1| alanine racemase [Fusobacterium sp. 1_1_41FAA] Length = 354 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 154/372 (41%), Gaps = 30/372 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + L+ N VVK NAYGLG +IA L GV F + ++ Sbjct: 2 RTWVEIDKENLKYNILKLKELADNREVLGVVKANAYGLGSVEIAKILQEVGVNFFGLANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ +A +L + ++ ISS+ Q L+ ++ Sbjct: 62 EEVIELQEAGIKANFLILGASFEDELIEATKRDIHVAISSMQQ---LKFLVENNLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA + + L L I +HL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVYEAEEVINFCKTHNL-NLVGIFTHLSDSDGNTIDTKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + ++ +++S+GI K+ ++ V T ++++ Sbjct: 178 KNIVKGLDLKYIHISNSAGITNFHENILGNLVRAGIAMYSFTGNKKTPCLKNVFTIKSKV 237 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + +K VSYG L DS AV IGYADG L GG I Sbjct: 238 LFTKKVNKDSFVSYGRHYTLPADSTYAVIPIGYADGLKKYL-----------TKGGYVLI 286 Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----YD 356 + I+G I MDMTM I L I++ D + + DI +D++ ++ Sbjct: 287 NNHRCEIIGNICMDMTMVRIPKELEKTIKISDEVTVINADI-IDNLN-----IPEFCVWE 340 Query: 357 LLVRIGTRYAKF 368 + IG R + Sbjct: 341 FMTGIGRRVKRI 352 >gi|46579368|ref|YP_010176.1| alanine racemase [Desulfovibrio vulgaris str. Hildenborough] gi|81830473|sp|Q72DH4|ALR_DESVH RecName: Full=Alanine racemase gi|46448782|gb|AAS95435.1| alanine racemase [Desulfovibrio vulgaris str. Hildenborough] gi|311233193|gb|ADP86047.1| alanine racemase [Desulfovibrio vulgaris RCH1] Length = 376 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 162/375 (43%), Gaps = 28/375 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + + L ++ N+ + ++ R V+K +AYG G E + AL G ++ V +V EG Sbjct: 10 VVVSLQSIIANYRRIRTVAQ--RPMPVIKSDAYGHGLEAVGMALEAEGARECAVGTVGEG 67 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-SVPQLTFYSKLMSCGVSHPYALQ 127 KLR A I L G ++ + ++ I + L + + AL+ Sbjct: 68 AKLRKAGFGADIVALLGALDREDAQLAASSGIIPTVLDIAGLERLAAQGTPERPVRVALK 127 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLI 186 DTG RLG + + + + +SHLA ADDP S Q F ++ Sbjct: 128 FDTGMARLGFTEHDVSALCERLRTLPSVRPVMAVSHLAVADDPTQSAFTMAQGAAFARIM 187 Query: 187 S----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ-----TVVT 237 + ++ I SL++S+ L P H+ + RPGI+LYG + ++ Sbjct: 188 AGLRSNFPDIMGSLSNSAATLAHPQLHWDVQRPGIALYGSNPLRGTALARHGEGLLPAMS 247 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ + AG +SYG T+D+ +A+ A GYAD Y LSG + Sbjct: 248 VSVPVLQVHPLPAGRSISYGRTYTATKDATVAIIAAGYADNYSRALSGRGVAVA------ 301 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 G VP+LG++ M T D+TD I GD + + G + D++A GT Sbjct: 302 -----GGRRVPVLGRVCMQTTAIDVTDVPGIATGDRVWLLGGPGPATVSADELADLWGTI 356 Query: 354 NYDLLVRIGTRYAKF 368 +Y++L +G + Sbjct: 357 SYEVLCLLGMNPRRH 371 >gi|154486952|ref|ZP_02028359.1| hypothetical protein BIFADO_00785 [Bifidobacterium adolescentis L2-32] gi|154084815|gb|EDN83860.1| hypothetical protein BIFADO_00785 [Bifidobacterium adolescentis L2-32] Length = 455 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 102/408 (25%), Positives = 163/408 (39%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL AL++N + ++ G +VK +AYG G A A G Sbjct: 27 QRRYPAQAIVDLAALRDNMRHLVSVVGGPHSGTAVMGIVKADAYGHGLVPAALAALAGGA 86 Query: 58 QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---- 112 E + LR R +L ++ G E + + SV L Sbjct: 87 TWLGTAQSHEALLLRKAGIGPDRCHILTWVYSGAEVPFDELVDNDIDISVGSLAGIDGVA 146 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 147 AAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 206 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P +Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 207 PDVPEFVASTDMQVETFKDFTRRMEAAGIPPEIRHLANTAATLSRPEIHFELTRPGIGLY 266 Query: 221 GGTDKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG +SYG D+ A+ +GYA Sbjct: 267 GYEADPAMGTPSTYSLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPLGYA 326 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG + + + G++ MD + D+ S L I Sbjct: 327 DGIHRSASGFDMEGAKHVTKPGGPVRVMTSEGPRLYRVSGRVCMDQFILDLHGSAAELGI 386 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A+ T +Y++ + R + Y Sbjct: 387 HEGDNVELFGPGRGEDYAEPTADDWGRAADTISYEIFTCLRNRIPRLY 434 >gi|294787104|ref|ZP_06752358.1| alanine racemase [Parascardovia denticolens F0305] gi|315226756|ref|ZP_07868544.1| alanine racemase [Parascardovia denticolens DSM 10105] gi|294485937|gb|EFG33571.1| alanine racemase [Parascardovia denticolens F0305] gi|315120888|gb|EFT84020.1| alanine racemase [Parascardovia denticolens DSM 10105] Length = 451 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 92/404 (22%), Positives = 158/404 (39%), Gaps = 40/404 (9%) Query: 6 FLRLKIDLTALKNNWHSM----NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +DL L++N +M +A+S + VVK +AYG G A A G Sbjct: 27 PAQVVVDLATLRDNMKAMVDRVHAVSPSTAVLGVVKADAYGHGLLPTALAALAGGATWLG 86 Query: 62 VTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 E + LR + ++ G +++I + V S Sbjct: 87 TAQSREALLLRQKGVGPDRARIITWLYNGRQDPFDRLISQDIDLAVGSLAGIDAIVRGAQ 146 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN---KKLGQLSLIISHLACADDPSSH 173 G ++VDTGF R G + +E ++ SHL+ AD P Sbjct: 147 KIGRPARVHVKVDTGFGRNGFTPEEFDQALTRLRQGVDAGQLEVVGQWSHLSVADAPEDP 206 Query: 174 ----VNSVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 Q+ F LA+++ P +F+L RPG+ LYG Sbjct: 207 ASRRATDDQIALFNEFTDRMKVAGLPPSIRHLANTAATFTRPEIYFELVRPGVGLYGYEP 266 Query: 225 KI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280 + + ++ +T +A++ ++ AG +SYG ++ A +GYADG P Sbjct: 267 DPVMGTGEDYGLKPAMTLQAQLGTVKNLPAGHSISYGRTYLTEGETSTADLPLGYADGIP 326 Query: 281 LTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDSLS---IEVGD 332 + SG + + V GG I +V + G++ MD + D+ S + GD Sbjct: 327 RSASGFNRAGALGVDHPGGPVRIMTNQGPRLVRVSGRVCMDQCILDLHGSAEDWGVSEGD 386 Query: 333 YIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++FGP + DD A A+GT +Y++ + R + Y Sbjct: 387 TVELFGPGRGEAYAEPTADDWARAAGTISYEIFTCLRNRIPRLY 430 >gi|119386397|ref|YP_917452.1| alanine racemase [Paracoccus denitrificans PD1222] gi|119376992|gb|ABL71756.1| alanine racemase [Paracoccus denitrificans PD1222] Length = 365 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 128/360 (35%), Positives = 182/360 (50%), Gaps = 27/360 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L ID+ A+ NW ++ A + AR AAVVK +AYGLG +++AP LY AG +DFFV EG Sbjct: 29 LVIDIPAIVANWKALAARAPGARAAAVVKADAYGLGADRVAPPLYAAGARDFFVALASEG 88 Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R P ARIFVL G G + + + + + P+ +Q Sbjct: 89 RAIRPLLPDDARIFVLSGHMEGADLAGLVPL-------LNSPEQFFRDRALRPRGPFGIQ 141 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +D+G NRLG+ E + +LI+SHLACAD+P N+ QL FR + Sbjct: 142 LDSGMNRLGIEPGEWAAIR---AEALAARPALIMSHLACADEPDHPANAQQLAAFRAMTE 198 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + SLA++ GILLGP+YHF L RPGI LYGG + + VVT +I +R+ Sbjct: 199 GVT-VPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADA----RPVVTLALPVIQVRE 253 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R S +A A GYADG L+ + G V Sbjct: 254 VKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAGERG---------V 304 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+I+MD+ D+TD + ++I +DD+A SGT Y++L +G RY + Sbjct: 305 PVIGRISMDLITVDVTDLPDVPA--ALEILNARQGVDDLAALSGTIGYEILTSLGRRYER 362 >gi|296128394|ref|YP_003635644.1| alanine racemase [Cellulomonas flavigena DSM 20109] gi|296020209|gb|ADG73445.1| alanine racemase [Cellulomonas flavigena DSM 20109] Length = 394 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 139/381 (36%), Gaps = 28/381 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + L + L A+ +N + + R AVVK + +GLG +A G Sbjct: 15 MLAATRPVLTVRLDAVAHNARVLA--ASARRLMAVVKADGFGLGAADVARTALAHGADAL 72 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCG 119 V ++ E V+LR A + + V S S G Sbjct: 73 GVATLAEAVELRTARIGAPLLSWLDAPGADLSDAVLHGIDVAVPSLAHLEAAVSAGRRTG 132 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNS 176 L +D G R G + + ++ ++ HLACA N+ Sbjct: 133 RGVDVHLYLDCGTARDGCPPETWPALCAAAWRAELAGAVRVVGVMGHLACAASLDPEANT 192 Query: 177 VQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 RF ++ + L +++ +L P F L+R G L G Sbjct: 193 DATARFAHGVARARAAGLRPRVRHLGATAAVLGLPTTRFDLSRVGAGLVGIDPTGRYPV- 251 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 ++ A ++ +R A V Y + + + +A+ +GYADG P+T SG Sbjct: 252 LRAAAQVTAPVVQVRDVGADVGVGYDHTYRTSAPTRLALLPLGYADGLPVTASGR----- 306 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 + + G P+ G+++MD + D+ D + GD + + G L + A Sbjct: 307 ------AEVLVHGRRRPLAGRVSMDQVVVDVGDLA-VRTGDVVTVIGTGEDLAPTLTEWA 359 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 +GT ++LL +G R + Sbjct: 360 GWAGTLPHELLTGLGRRLVRH 380 >gi|300813596|ref|ZP_07093927.1| alanine racemase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512344|gb|EFK39513.1| alanine racemase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 388 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 146/369 (39%), Gaps = 29/369 (7%) Query: 1 MHSN--EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ N ++++L +N + ++ N++ V+K + Y G ++ A G+ Sbjct: 1 MYKNPTRSAWVEVNLDNYISNLKYIKSIINKNSKIMCVIKSDGYRAGALELTEASIKFGI 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLM 116 F V ++ EG+ LR + I +L + + +++P I S Y Sbjct: 61 NYFGVATLSEGISLRKHFKDINILILGYTPSYLLEDLCKYDIMPNIYSYDNCKDYNEICK 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G L +DTG NR+G +EA ++ + SH A AD Sbjct: 121 KYGKVGKIHLSIDTGMNRVGFIPGKEAFFDIIKISKLSNIKIDGVFSHFAKAD-VDEDFT 179 Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINK 228 Q + F + + +++S+ IL Y + RPG ++G ++ Sbjct: 180 KKQFDTFTSFTKEIENAGVNLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFKDE 239 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P++ + A I I+ G+ VSYG + T+D+ + +GYADG+P LSG S Sbjct: 240 KLPLKKDLQVFAMIANIKTIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSGKFS 299 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 I G P +G I MD M D T ++ D + G +I Sbjct: 300 -----------VLIGGKKCPQIGNICMDQFMVDATGI-DCKIDDVAVLLGKDGDEEISAF 347 Query: 345 DVALASGTT 353 D+ +G Sbjct: 348 DLCQLTGDI 356 >gi|257462583|ref|ZP_05626993.1| alanine racemase, biosynthetic [Fusobacterium sp. D12] gi|317060235|ref|ZP_07924720.1| alanine racemase [Fusobacterium sp. D12] gi|313685911|gb|EFS22746.1| alanine racemase [Fusobacterium sp. D12] Length = 354 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 153/374 (40%), Gaps = 32/374 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID L++N + + V+K NAYGLG + L G+ F V S+ Sbjct: 2 RAWVEIDTEHLRHNIREIQKRAEGLEVCGVIKANAYGLGVLPVTKILEEEGIHFFAVASL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++R I +L + + + +SS +L + S+ Sbjct: 62 EEAKEVRSAGIAGEILILGSLFHEEILEAEEAGFHINVSSREELEWISQHA---PKVKIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERF 182 +++DTG RLG S QE D + L Q+S I SH + AD S Q+ERF Sbjct: 119 IKIDTGMTRLGFSYQEGRDILAFAKQLSL-QISGIFSHFSDADGFSQEAQKYTETQIERF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + +S ++ N + R GI +YG + VVT + + Sbjct: 178 LPYANQKDIPYRHIFNSGALVQHRNQKIGNMVRAGICMYGILGSTPIPD-FKNVVTLKTK 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ +K VSYG L + IGYADG L+ GGK Sbjct: 237 VLFKKKVEEDTYVSYGRLYCLKKGETYVTLPIGYADGVKKYLAN-----------GGKVE 285 Query: 302 IKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDI----KLDDVALASGTTNY 355 I G + PI+G I MDM M I ++L I++G + ++ +I + + T + Sbjct: 286 ILGELCPIIGAICMDMMMVKIPENLEDKIKIGTEVIVWNNEIIEKNNIPE------TCTW 339 Query: 356 DLLVRIGTRYAKFY 369 D+ +G R + Y Sbjct: 340 DMFTALGRRVQRIY 353 >gi|326692928|ref|ZP_08229933.1| alanine racemase [Leuconostoc argentinum KCTC 3773] Length = 370 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 152/375 (40%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +++I ALKNN + SG + VK NAYGLG + A GV V Sbjct: 7 RPTQIEISQKALKNNVAVVKQTSGADKIFLAVKSNAYGLGLIPTSKAAIAGGVYGLAVAI 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR A I +L +++ +++ ++ S+ L + +S Sbjct: 67 IDEALALRHERLTAPILILGISPAQYAELMAVQHIMAMVVSLDWLKEAATYLSGEQRLHV 126 Query: 125 ALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +L VDTG R+G + AL + + L + +H A +D ++ +QL R+ Sbjct: 127 SLGVDTGMGRIGFRDRAALAEAIAYVQAHHDLFDYVGLATHFAESDSANTDYFEMQLARW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 L E S + + + R G LYG + H +Q V+ Sbjct: 187 HELTDGLPEPEYYHVANSGAAMYHADEVPHDVIRVGTVLYGVEPSRGELADGHELQPVMA 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + I +++ AGE +SY + T D I IGY DG+ L+G + Sbjct: 247 LRSEINFVKQLPAGEGISYSHKYTTTGDEWIGTVPIGYGDGWLRKLTGFN---------- 296 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + G PI+G+I MD M + + G + + G D L+DVA +G Sbjct: 297 --VIVDGQYAPIVGQIAMDQMMIRLPHEYPV--GTKVTLIGRDGGLENTLEDVAQYAGLA 352 Query: 354 NYDLLVRIGTRYAKF 368 ++++ + R + Sbjct: 353 PWEIMTGMQDRLHRV 367 >gi|282883163|ref|ZP_06291762.1| alanine racemase [Peptoniphilus lacrimalis 315-B] gi|281296975|gb|EFA89472.1| alanine racemase [Peptoniphilus lacrimalis 315-B] Length = 388 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 146/369 (39%), Gaps = 29/369 (7%) Query: 1 MHSN--EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ N ++++L +N + ++ N++ V+K + Y G ++ A G+ Sbjct: 1 MYKNPTRSAWVEVNLDNYISNLKYIKSIINKNSKIMCVIKSDGYRAGALELTEASVKFGI 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLM 116 F V ++ EG+ LR + I +L + + +++P I S Y Sbjct: 61 NYFGVATLSEGISLRKHFKDINILILGYTPSYLLEDLCKYDIMPNIYSYDNCKDYNEICK 120 Query: 117 SCGVSHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G L +DTG NR+G +EA ++ + SH A AD Sbjct: 121 KYGKVGKIHLSIDTGMNRVGFIPGKEAFFDIIKISKLSNIKIDGVFSHFAKAD-VDEDFT 179 Query: 176 SVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGT--DKINK 228 Q + F + + +++S+ IL Y + RPG ++G ++ Sbjct: 180 KKQFDTFTSFTKEIENAGVNLGLKHISNSASILKHREYDLDMVRPGAIMHGLYKGFFKDE 239 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P++ + A I I+ G+ VSYG + T+D+ + +GYADG+P LSG S Sbjct: 240 KLPLKKDLQVFAMIANIKTIKKGQGVSYGHKYIATKDTKVVTIPLGYADGFPRILSGKFS 299 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLD 344 I G P +G I MD M D T ++ D + G +I Sbjct: 300 -----------VLIGGKKCPQIGNICMDQFMVDATGI-DCKINDVAVLLGKDGDEEISAF 347 Query: 345 DVALASGTT 353 D+ +G Sbjct: 348 DLCQLTGDI 356 >gi|126735551|ref|ZP_01751296.1| alanine racemase [Roseobacter sp. CCS2] gi|126714738|gb|EBA11604.1| alanine racemase [Roseobacter sp. CCS2] Length = 345 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 191/360 (53%), Gaps = 26/360 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL A+ NW +++A++ + +TAAVVK N YGLG +A AL+ AGV+ FFV EE Sbjct: 6 LIIDLDAVVANWRALDAMT-DCKTAAVVKANGYGLGAANVAKALFKAGVRQFFVAVAEEA 64 Query: 69 VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R P+ I V G G II + L P+++SV Q + + HP+ +Q Sbjct: 65 AAIREELGPKPEISVFSGHMAGDTDIIRELGLTPMLNSVEQ---LTHHLETLPGHPFGVQ 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLG+ +QE + + + L++SHLACAD+P +N QL +F+ + Sbjct: 122 LDTGMNRLGMEMQEWAAVAELALAQ---KPRLVMSHLACADEPDHPMNPYQLAQFKKMTD 178 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 SLA++ GILLGP YHF LTRPGI LYGG S V+ + +I +R Sbjct: 179 GITA-PRSLAATGGILLGPEYHFDLTRPGIGLYGGLPFAQAS----PVIELDLPVIQVRD 233 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE+V YG + TR S IA + GYADG LS + + Sbjct: 234 VAEGEVVGYGNVWQATRASRIATVSAGYADGIARILSDKATL-----------YHGDTPC 282 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++ +++MD+ D+TD + + GP +DD+A A+ T Y++L ++G RY + Sbjct: 283 PLVSRVSMDLLTIDVTDLTE--TPKKLTLIGPHQGVDDLAQAANTIGYEVLTQLGDRYNR 340 >gi|223986552|ref|ZP_03636550.1| hypothetical protein HOLDEFILI_03866 [Holdemania filiformis DSM 12042] gi|223961492|gb|EEF66006.1| hypothetical protein HOLDEFILI_03866 [Holdemania filiformis DSM 12042] Length = 371 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 159/364 (43%), Gaps = 22/364 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++DL +K N + + + + AV+K N YG G +A A AG V+S++E Sbjct: 7 WVEVDLDQIKENIRWLRRQT-DRQFIAVIKANGYGAGDGPVARAALEAGAAMLAVSSLDE 65 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + LR A + +L + P Q +++ +L S+ + ++ G L+ Sbjct: 66 ALSLRYQGITAPVLILGVVDPSQAELLLRYDLAVPAVSLDWVKELVQIPVRG--LRVHLK 123 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG +R+G + L + + I +H AC+D+P + + Q RF ++ Sbjct: 124 VDTGMHRIGTGNLDELQAMLTLLQENGALVEGIFTHFACSDNPDNGMTDDQAARFEHIVR 183 Query: 188 HYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + +S + P R G++++G T P V+ +R++ + Sbjct: 184 ALDTPFRWVHSSNSDAAVHYPKAPGNAVRCGLAMFGVTSYATALKPC---VSLYSRLVYV 240 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 + AG+ V YG ++ I IGYADG+ G + +I+G Sbjct: 241 KALPAGQPVGYGATYTTQKEEWIGTLPIGYADGWIRKHQGR------------QCWIEGE 288 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 +G+I MD M + + + G +++FGP + L+ VA GT Y++L + R Sbjct: 289 TGDFVGRICMDQAMIRLPHAFPV--GTKVELFGPHLPLEQVARELGTIPYEVLTLLSDRL 346 Query: 366 AKFY 369 AK Y Sbjct: 347 AKVY 350 >gi|261338093|ref|ZP_05965977.1| alanine racemase [Bifidobacterium gallicum DSM 20093] gi|270276712|gb|EFA22566.1| alanine racemase [Bifidobacterium gallicum DSM 20093] Length = 466 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 160/415 (38%), Gaps = 51/415 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-------NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 + +DL AL++N + + VVK +AYG G A A G Sbjct: 31 PAQAIVDLAALRDNMRHLVEIVNADPAKPHRTEVMGVVKADAYGHGLVPAALAALAGGAT 90 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD----TNLIPVISSVPQLTFYSK 114 E ++LR + ++ +D ++ + + + +K Sbjct: 91 WLGTAQAHEALELRRAGIGPERARILTWVNDPYEVPYDELLRQHIDVSVGTPDAVEQLAK 150 Query: 115 LMSC---------GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIIS 162 + ++VDTGF R G +L + + L +++ S Sbjct: 151 AAEAVQRFVRGADPIVAHVHVKVDTGFGRNGFTLNQLDLIAPRLKQLQDAGLFEITGQWS 210 Query: 163 HLACADDPSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLT 213 HLA AD P Q+ RF H + GIE LA+++ L P H+ L Sbjct: 211 HLAVADAPDVPEFVHETDEQVARFEEFTRHMQEAGIEPRIRHLANTAATLSRPEIHYDLV 270 Query: 214 RPGISLYGGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 RPG++LYG P +T +A++ ++ G +SYG + +A Sbjct: 271 RPGVALYGYEPDPAMGTPQDYGLTPAMTLQAQLSSVKHVPQGTGLSYGRVYVTDAPTSVA 330 Query: 270 VAAIGYADGYPLTLSGLDSEHSPS-VFLGGKGFI---KGYMVPIL-GKITMDMTMFDITD 324 + +GYADG + SG D S GG G V + G++ MD + D+ Sbjct: 331 IVPVGYADGIHRSASGFDRCGSRHEDRKGGPVAFMTRDGVQVRHVSGRVCMDQFIVDLHG 390 Query: 325 S---LSIEVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 L I++GD +Q+FGP + DD A A+ T +Y++ + R + Y Sbjct: 391 DAKELGIDIGDTVQLFGPGRGEAYGEPTADDWAKAADTISYEIFTCLRNRVPRLY 445 >gi|119025514|ref|YP_909359.1| alanine racemase [Bifidobacterium adolescentis ATCC 15703] gi|118765098|dbj|BAF39277.1| alanine racemase [Bifidobacterium adolescentis ATCC 15703] Length = 452 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 102/408 (25%), Positives = 163/408 (39%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL AL++N + ++ G +VK +AYG G A A G Sbjct: 24 QRRYPAQAIVDLAALRDNMRHLVSVVGGPHSGTAVMGIVKADAYGHGLVPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---- 112 E + LR R +L ++ G E + + SV L Sbjct: 84 TWLGTAQSHEALLLRKAGIGPDRCHILTWVYSGAEVPFDELVDNDIDISVGSLAGIDGVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADA 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P +Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDMQVETFKDFTRRMEAAGIPPEIRHLANTAATLSRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG +SYG D+ A+ +GYA Sbjct: 264 GYEADPAMGTPSTYSLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPSDTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG + + + G++ MD + D+ S L I Sbjct: 324 DGIHRSASGFDMEGAKHVTKPGGPVRVMTSEGPRLYRVSGRVCMDQFILDLHGSAAELGI 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A+ T +Y++ + R + Y Sbjct: 384 HEGDNVELFGPGRGEDYAEPTADDWGHAADTISYEIFTCLRNRIPRLY 431 >gi|114769303|ref|ZP_01446929.1| alanine racemase [alpha proteobacterium HTCC2255] gi|114550220|gb|EAU53101.1| alanine racemase [alpha proteobacterium HTCC2255] Length = 351 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 171/363 (47%), Gaps = 27/363 (7%) Query: 9 LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 LKID A+ NNW S+ + N TAAV+K +AYGL + IA L V+ FFV EE Sbjct: 11 LKIDTNAIYNNWQSLDKKSAKNVETAAVIKADAYGLSTKNIASYLAFKNVKTFFVAIAEE 70 Query: 68 GVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G+ R A IFV G II + NLIP+++S Q + + + Sbjct: 71 GIGARKAVGNDADIFVFSGQMENDAAIIKEYNLIPLLNSADQYHQFQINSPNQK---FGI 127 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+DTG NRLG+ E N N L SHLACAD+P+ N QL F + Sbjct: 128 QLDTGMNRLGMEGIEFSSLDENMSNACLIM-----SHLACADEPNHSQNLKQLRTF-HHL 181 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + I SL+++ GILLGP YHF L RPGI LYGG V+ +I R Sbjct: 182 TDDLKIRKSLSATGGILLGPEYHFDLCRPGIGLYGGLPYDTA----LPVIKLSIPVIQSR 237 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE V YGGQ + D+ +A + GYADG + + Sbjct: 238 TVFAGETVGYGGQWRAKTDTRVATISAGYADGLIRAIGNGQLLL----------YHGDVG 287 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 P++G+++MD+ DIT + + +D +A A+ T Y++L +G RYA Sbjct: 288 CPLIGRVSMDLITVDITQLEDTPR--SLDLINKIQTVDIIANAANTIGYEILTSLGARYA 345 Query: 367 KFY 369 + Y Sbjct: 346 REY 348 >gi|325479259|gb|EGC82355.1| alanine racemase [Anaerococcus prevotii ACS-065-V-Col13] Length = 373 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 141/356 (39%), Gaps = 26/356 (7%) Query: 21 HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80 + +++ AVVK NAYGLG IA + + + F V E LRL I Sbjct: 18 EKVKSMNNQTPICAVVKANAYGLGAVPIATYIEDH-ISYFAVARYSEAKALRLSGIIKPI 76 Query: 81 FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQ 140 +L + + + ++ I + + + L +DTG RLG Sbjct: 77 LILGYVSVEEAIECAEYDIDICIFDMDY--TFEIDKALNKKLNGHLAIDTGHTRLGFRNY 134 Query: 141 EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK---GIEASLA 197 E + N K ++ +H A AD+ + + +Q + F IS+ + IE Sbjct: 135 ETQKIL-SLKNLKNIRIRGAFTHYATADEKDTSFSKLQTKLFEETISNVRDELNIENIHI 193 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDK----INKSHPMQTVVTAEARIILIRKALAGEL 253 ++S + + + R GIS+YG S ++ +RI ++ G Sbjct: 194 ANSAAGISFDVKSDMIRLGISMYGIYPSDYLKDTSSIDLEKTFRFMSRIAFVKDVKKGTP 253 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 +SYG +D IA IGYADGY S + G+ + G + G++ Sbjct: 254 ISYGRTFYTKKDMKIATVPIGYADGYFRAFSNI-----------GEVLVNGENARVCGRV 302 Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 MD M D+++ ++GD ++I+ + A T Y+L+ R + Y Sbjct: 303 CMDQMMIDVSNI-KCKIGDEVEIY---YDIYKEANKIDTIAYELMTSFDMRLERVY 354 >gi|15606873|ref|NP_214253.1| alanine racemase [Aquifex aeolicus VF5] gi|3913028|sp|O67687|ALR_AQUAE RecName: Full=Alanine racemase gi|2984113|gb|AAC07650.1| alanine racemase [Aquifex aeolicus VF5] Length = 338 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 33/366 (9%) Query: 6 FLR--LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62 R L+I+ +++N ++ SG + AV+K +AYG+G ++A L V F V Sbjct: 1 MPRAILEINSERIRHNVKKLSEFSGK-KVIAVIKADAYGIGSIQMAKILEPIEEVDAFAV 59 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 VEEGV+LR + I +L G+ + ++ + L PV+S + L Sbjct: 60 ACVEEGVELRKMGIKKEILILGGVLKDEVPLVEEYFLTPVVSDIEHLRAI-----GNRDI 114 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ DTG RLG + ++ + AD+ + +Q+++F Sbjct: 115 KFHVKYDTGMGRLGFLNE---------VIHDPRVEGIMSHLSSPADE---EFSKLQIKKF 162 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 ++ Y +E SS ++ R G+++YG N ++ +T +A++ Sbjct: 163 EEIVKKYTKVEKIHMESSAGVVYRVPFTTHIRVGLAMYGEKPLKNYPVDIKPALTLKAKL 222 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +++ VSY + + V A GYADG TLS Sbjct: 223 ISVKELPENYPVSYSRTYVTKKKTKTGVVAFGYADGLMKTLSNRS-----------YLLY 271 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 KG +PI G ITMDMT+ D+ + +VGD++ + + ++A +GT Y+L+ + Sbjct: 272 KGEKLPIFGNITMDMTIVDL-KNTDAKVGDWVYVVNEERTFTELAREAGTIPYELMCNLS 330 Query: 363 TRYAKF 368 R + Sbjct: 331 KRIKRV 336 >gi|218288214|ref|ZP_03492513.1| alanine racemase [Alicyclobacillus acidocaldarius LAA1] gi|218241573|gb|EED08746.1| alanine racemase [Alicyclobacillus acidocaldarius LAA1] Length = 400 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 95/401 (23%), Positives = 164/401 (40%), Gaps = 61/401 (15%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L IDL L +N + L VK +AYG G + L GV+ V Sbjct: 3 RPLFAVIDLGHLSHNIRYLQSRLRPGTSLMVAVKADAYGHGVRAVVDRLAREGVRQVAVA 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S+EE +++R + I VL + P + + ++ + + ++ Sbjct: 63 SIEEALEIRAFDRDVNILVLGAVTPDACMKAAEAEVEIALTDL---SPIDEIPRLPKRLR 119 Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +DTG NRLG+ EA+ ++ +L +HLA AD + Q+ER Sbjct: 120 VHLPLDTGMNRLGVKRTDEAVALARAIAAREDLELVGAGTHLAAADAEDPAHAAGQMERL 179 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 + + + + +S+ +L P++H + R GI+ YG + + + ++ V Sbjct: 180 KAFVRALEAAGLRPPRIHAGNSAALLRDPDWHLDMVRVGIAAYGYSPDPSVLPAPSLRPV 239 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ A ++ + +A AGE V YG +TR +IA A GYADGYP LS Sbjct: 240 MSLYAGVLRVAQAEAGETVGYGATFVVTRPMVIATVAGGYADGYPRHLSNE--------- 290 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL------------ 343 G+ ++G + P++G++ MD M D+T + GD + +FG D Sbjct: 291 --GEVLVRGELRPVIGRVCMDQLMVDVTGL-DVATGDVVALFGYDPPALWRAGWWNRLRP 347 Query: 344 DD-------------------------VALASGTTNYDLLV 359 +D +A + T Y++L Sbjct: 348 EDRIARVQETYRMASNSEERRVLSLHRLAERAQTIPYEILC 388 >gi|291456246|ref|ZP_06595636.1| alanine racemase [Bifidobacterium breve DSM 20213] gi|291381523|gb|EFE89041.1| alanine racemase [Bifidobacterium breve DSM 20213] Length = 452 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 159/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + ++L +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVNLKTMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPSALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFAAALAELVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDRQIETFKDFTARMEKAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEQFVEPTADDWARAADTISYEVFTCLRNRIPRLY 431 >gi|332185497|ref|ZP_08387245.1| alanine racemase [Sphingomonas sp. S17] gi|332014475|gb|EGI56532.1| alanine racemase [Sphingomonas sp. S17] Length = 342 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 26/367 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M LRL+ID AL++NW +++ LSG A A VK N YGLG +A AL AG +DF Sbjct: 1 MEIPAPLRLRIDRDALQSNWQALDRLSGTAACGAAVKANGYGLGATLVAKALAEAGCRDF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FV + E + L VL+G+ ++ PV+S+ Q+ + Sbjct: 61 FVANWAEALALAPLGLTVS--VLHGLRADDVEVARAGFARPVLSTPEQIARWRDSGGG-- 116 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + VDTG NRLG+S++ Q+ ++SHLACAD+ +N+ Q Sbjct: 117 --LCDVMVDTGMNRLGVSVE-----AVTGGLLDGLQIETLLSHLACADEDV-PMNARQQA 168 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F L SLA+S+GI LG +Y F LTRPG++LYGG + + + ++ V EA Sbjct: 169 AFAGLKGQTGARRMSLANSAGIGLGADYRFDLTRPGLALYGGVPRPDMAQHLRQVAWPEA 228 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +I+ R AGE V Y D+ +A+ +GYADGY LSGL G Sbjct: 229 QILQRRHVPAGETVGYNATWTAPADTEVAILNLGYADGYRRALSGL-----------GAA 277 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G +P+LG+++MD+ ++T + GD+ D L + ASG + Y+LL Sbjct: 278 VVDGVKLPVLGRVSMDLLAINVTARADLAEGDW---LSMDYDLAAASAASGVSQYELLTG 334 Query: 361 IGTRYAK 367 + R+A+ Sbjct: 335 LAQRFAR 341 >gi|120608956|ref|YP_968634.1| alanine racemase [Acidovorax citrulli AAC00-1] gi|166919543|sp|A1TIS2|ALR_ACIAC RecName: Full=Alanine racemase gi|120587420|gb|ABM30860.1| alanine racemase [Acidovorax citrulli AAC00-1] Length = 369 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 149/380 (39%), Gaps = 35/380 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I AL+ N A + +AR AVVK NAYG G E+ L G F + Sbjct: 3 RPIQATIHTAALQQNLARARAAAPDARVWAVVKANAYGHGIERAFEGLR--GADGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + I +L G+ P ++ +L + Q+ + S + H Sbjct: 61 LGEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLSAHKTHA-PHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG ++H + AD P + Q++ F Sbjct: 120 VFLKMNSGMNRLGFPPARYRAAWARLNALPQVDEISFMTHFSDADGPRG--IAHQIDAFC 177 Query: 184 TLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKSHPMQT----V 235 T G E ++++S+ L R GI LYG + Sbjct: 178 TATQDLPG-ERTVSNSAATLRHAGGDARVRGDWVRAGIVLYGSAADHPEHTAAHWGLAPT 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ARII ++ AG+ V YG R I V A GYADGYP Sbjct: 237 MTLSARIIGTQQLQAGDTVGYGSSFTADRPMTIGVVACGYADGYPRHA-----------P 285 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGPD-----IKLDDV 346 G + G +G+++MDM D+T VG ++G + +D+V Sbjct: 286 TGTPVLVNGVRTRTVGRVSMDMITVDLTPLHEAGVEAGVGSEATLWGRASCGAVLCIDEV 345 Query: 347 ALASGTTNYDLLVRIGTRYA 366 A A+GT Y+L+ + R Sbjct: 346 AQAAGTVGYELMCALAPRVP 365 >gi|116619014|ref|YP_819385.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097861|gb|ABJ63012.1| Alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 370 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 147/375 (39%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL++ +A+++N ++ +SG + VK NAYG G +A A G+ V Sbjct: 7 RPTRLEVSKSAVEHNITTVKNVSGADKVFLTVKSNAYGFGLIPMAQAAVAGGIYGLGVAV 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR A I +L +++ +++ + S+ L ++ P Sbjct: 67 LDEAIALRHERITAPILILGISQVKYVELMAVQHIMATVVSLDWLEKAEHQLTGEQRLPV 126 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSF--NKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +DTG R+G +E L + + + +H A +D + QL R+ Sbjct: 127 TLGIDTGMGRIGFRDRETLSKAIQFVLDHADKFEYVGLSTHFAESDSSDTRYFQKQLTRW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 L + S + + ++ R G LYG + ++ V+ Sbjct: 187 HQLTDDLPKPKYYHVANSGAAMYHAEEVPHEVVRVGTVLYGIEPSRGELADGRNLKPVMA 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + +++ AGE +SY + T++ I IGY DG+ L G Sbjct: 247 LRSEVNFVKRLPAGEGISYSHKYTTTQNEWIGTVPIGYGDGWLRKLMGF----------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 K I G PI+G++ MD M + G + G D ++DVA +G Sbjct: 296 -KVIIDGQYAPIVGQVAMDQLMIRLPREYP--EGTTVTFIGQDGDLENTIEDVAQFAGLA 352 Query: 354 NYDLLVRIGTRYAKF 368 +++ + R + Sbjct: 353 PWEITTGLQDRIHRI 367 >gi|161779854|gb|ABX79415.1| VanTc4 [Enterococcus casseliflavus] Length = 700 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 165/382 (43%), Gaps = 38/382 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + + AL +N + + + + AVVK +AYG + +A L GV Sbjct: 337 LHLQRAAK-EFSAPALLHNLQEIKRVIPSTTKVMAVVKADAYGCDAQLVARTLERVGVDF 395 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V ++EE ++LR ++R+ +L + K + +LI I S + G Sbjct: 396 FAVATIEEAIELRRAGIKSRLLILGYTSAQRAKELNRYSLIQTIVSEAHGQALA---RTG 452 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NS 176 + L VDTG +RLG++ L+ + +++ I SHL +D + Sbjct: 453 LPIECHLAVDTGMHRLGVAPD--LETVRRLYALPSLKITGIFSHLGSSDQLDTASILRTQ 510 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q+ F L++ L SS GIL P H+ RPGI L G N+ Sbjct: 511 AQIICFDDLLAGLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTK 570 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q ++T +A ++ + AGE + YG R + I + +IGY DG P LS Sbjct: 571 QKINVQPILTLKALLVDKKTVAAGEAIGYGLATVFDRPTTIGIVSIGYCDGVPRALSNQG 630 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV- 346 + S +G ++P +G I MDM + D+TD + V ++++ D Sbjct: 631 FQLS----------YQGVLLPQVGLICMDMLLIDLTDYPELAVESWLEVIS------DWT 674 Query: 347 --ALASGTTNYDLLVRIGTRYA 366 A + T +L+ R+G+R Sbjct: 675 NTADQAQTIPNELISRLGSRVP 696 >gi|85059320|ref|YP_455022.1| alanine racemase [Sodalis glossinidius str. 'morsitans'] gi|123519392|sp|Q2NTA8|ALR_SODGM RecName: Full=Alanine racemase gi|84779840|dbj|BAE74617.1| alanine racemase [Sodalis glossinidius str. 'morsitans'] Length = 356 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 22/366 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + K+D L +N + + A+ +VVK N YG G + L F + Sbjct: 3 RPIVAKVDSAVLASNLSIVRRHAPQAQVWSVVKANGYGHGLNTVWQGLQQ--TDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E V LR + I +L G P +I L V+ S Q+ ++ Sbjct: 61 LHEAVVLREKGWRGPILLLEGFFQPADLAVIDRYRLTTVVHSDWQIEALRRMTP-RAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG S + + K ++SH A AD P Q+ Sbjct: 120 IYLKLNSGMNRLGFSERALPGAWQSLNALKHVATLTLMSHFAYADMPEG--VEGQMAVVA 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAE 239 G LA+S+ L P H Q RPGI LYG + N ++ V+T + Sbjct: 178 RAGEGLTG-PRCLANSAATLWHPATHGQWVRPGIILYGASPSGNWQDIAASGLRPVMTLQ 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + +I ++ AG + YGG+ +++ + V A GYADGYP G Sbjct: 237 SELIAVQSVPAGGRIGYGGRHRVSETHRVGVVACGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G LG ++MDM M D+ +G ++++G +K+D+VA ++GT Y+L+ Sbjct: 286 ILVDGVRTSTLGAVSMDMLMVDLQLCPKARIGSAVELWGDHVKIDEVAASAGTLGYELMS 345 Query: 360 RIGTRY 365 + R Sbjct: 346 ALAPRV 351 >gi|330822880|ref|YP_004386183.1| alanine racemase [Alicycliphilus denitrificans K601] gi|329308252|gb|AEB82667.1| Alanine racemase [Alicycliphilus denitrificans K601] Length = 364 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 148/374 (39%), Gaps = 28/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + +AR AVVK NAYG G E++ L + + Sbjct: 3 RPILATIHPAAVQHNLERARRAAPDARMWAVVKANAYGHGIERVFEGLRS--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + + +L G+ P ++ +L + Q+ + + + H Sbjct: 61 MAEAERVRRLGWRGPVLLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLAAHKTQA-PHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + ++H + AD P + VQ F Sbjct: 120 VFLKMNSGMNRLGFAPGRYRSAWARLNALPQVDEISFMTHFSDADGPRGIAHQVQA--FH 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINK----SHPMQTVVT 237 G S++ + G R GI+LYG + ++ +T Sbjct: 178 RATQDLPGERCIANSAAILRHGGEAQVRLDWVRAGIALYGSAPDHPERTAVDWGLEPAMT 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +RII +++ AG+ V YG + I V A GYADGYP G Sbjct: 238 LASRIIGVQQLQAGDTVGYGSRFTAEGPLAIGVVACGYADGYPRHCD-----------TG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G +G+++MDM D+T +G + ++G + +D+VA A GT Sbjct: 287 TPVLVNGVRTRTIGRVSMDMIAVDLTPVPGAGMGAEVTLWGRASNGVVLPIDEVAEAGGT 346 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 VGYELMCALAPRVP 360 >gi|223984929|ref|ZP_03635032.1| hypothetical protein HOLDEFILI_02334 [Holdemania filiformis DSM 12042] gi|223963098|gb|EEF67507.1| hypothetical protein HOLDEFILI_02334 [Holdemania filiformis DSM 12042] Length = 607 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 157/383 (40%), Gaps = 30/383 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + + +++D AL++N + ++ AV+K NAYG G E A L GV+ Sbjct: 238 LEGRDRAWVELDGIALRHNLTVLRKAMTPYQEIMAVLKANAYGHGLEPTADFLSRQGVRH 297 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V +VEE +R P A I +L + P + + L ++S Q G Sbjct: 298 FAVATVEEAKVIRAVNPTAEILILGYVPPQRAAEVSRLRLSLTLTSYDQACQLD---QTG 354 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNS 176 + L VDTG +RLG + ++ + +++ + SHL AD+ + Sbjct: 355 FAIDAHLPVDTGMHRLGEAAEDLDAIVRYY-SLSHLRITGLYSHLYEADNLDAEAVAHTQ 413 Query: 177 VQLERFRTLIS--HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKS 229 Q++RF + +GI+ L S G L P L R GI+L+G Sbjct: 414 AQIDRFFHVADALKERGIDPGRLHLQGSYGFLNYPELRCDLVRFGIALFGCVAPFRSRME 473 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V + RI +R GE Y D+ +A+ +IGY+DG + S Sbjct: 474 LDLRPVASVHTRIAALRSLRKGEGAGYNHAWTAPCDTTVAILSIGYSDGLFRSSS----- 528 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 F G + I G P++G + MD + D+ +G+ + + G I + Sbjct: 529 -----FQGVEVLIHGQRRPLIGAMCMDQCLVDLGTLP-AAIGEEVVVIGIQGSESISALE 582 Query: 346 VALASGTTNYDLLVRIGTRYAKF 368 VA + T + L + R + Sbjct: 583 VAEKNETIVPETLSMLRGRMPRI 605 >gi|241896461|ref|ZP_04783757.1| alanine racemase [Weissella paramesenteroides ATCC 33313] gi|241870441|gb|EER74192.1| alanine racemase [Weissella paramesenteroides ATCC 33313] Length = 381 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 138/376 (36%), Gaps = 26/376 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+KI A+ +N SG VK NAYG G +A A AGV V Sbjct: 17 RPTRIKISQAAVTHNVAVTRQASGAKFMFLAVKANAYGFGLIPMAQAAIKAGVDGLAVAV 76 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHP 123 ++E + LR I +L P K+I D +LI +S + L + + Sbjct: 77 LDEALALRQAGITVPIIILGITLPQYAKLIADNDLIATVSDLDWLQAAQQNLAGSQSTLQ 136 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLER 181 L VDTG R+G +E+L + ++H + +D ++ QL Sbjct: 137 VNLGVDTGMGRIGFRNRESLSEAITYLASQPIFFKYQSIMTHFSESDSLATDYFQKQLSN 196 Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT---VV 236 + L S + + R G +YG + P V+ Sbjct: 197 WHRLTDGLPMPPMVHLANSGAAMYHADEIPTDYIRAGTVVYGIEPSRGEVLPDNYLKPVL 256 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E +I +++ A +SYG + IGYADG P + G Sbjct: 257 TLETELIFVKQMPANVGISYGHTYYTHEGEWVGTVPIGYADGLPRPIQGF---------- 306 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGT 352 + + G PI+G+I MD M + + L + G + I G + L+DVA G Sbjct: 307 --EVLVNGQKAPIIGQIAMDQLMISLPEKLPV--GTVVTIIGKQGQYENTLEDVAQHVGL 362 Query: 353 TNYDLLVRIGTRYAKF 368 + + + R + Sbjct: 363 APWVVATGLQDRLMRV 378 >gi|319761022|ref|YP_004124959.1| alanine racemase [Alicycliphilus denitrificans BC] gi|317115583|gb|ADU98071.1| alanine racemase [Alicycliphilus denitrificans BC] Length = 364 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 148/374 (39%), Gaps = 28/374 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + +AR AVVK NAYG G E++ L + + Sbjct: 3 RPILATIHPAAVQHNLERARRAAPDARMWAVVKANAYGHGIERVFEGLRS--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + E ++R + + +L G+ P ++ +L + Q+ + + + H Sbjct: 61 MAEAERVRRLGWRGPVLLLEGVFEPRDLELCSRLSLWHAVHCDEQIDWLAAHKTQA-PHR 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + ++H + AD P + VQ F Sbjct: 120 VFLKMNSGMNRLGFAPGRYRSAWARLNALPQVDEISFMTHFSDADGPRGIAHQVQA--FH 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINK----SHPMQTVVT 237 G S++ + G R GI+LYG + ++ +T Sbjct: 178 RATQDLPGERCIANSAAILRHGGEAQVRLDWVRAGIALYGSAPDHPERTAVDWGLEPAMT 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +RII +++ AG+ V YG + I V A GYADGYP G Sbjct: 238 LASRIIGVQQLQAGDTVGYGSRFTAEGPLAIGVVACGYADGYPRHCD-----------TG 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGT 352 + G +G+++MDM D+T +G + ++G + +D+VA A GT Sbjct: 287 TPVLVNGVRTRTIGRVSMDMIAVDLTPVPGAGMGAEVTLWGRAANGVVLPIDEVAEAGGT 346 Query: 353 TNYDLLVRIGTRYA 366 Y+L+ + R Sbjct: 347 VGYELMCALAPRVP 360 >gi|67479937|gb|AAY67970.1| serine racemase [Enterococcus gallinarum] Length = 698 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 38/376 (10%) Query: 10 KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + TAL +N + + S + AVVK +AYG G +++AP L AG+ F V +++EG Sbjct: 343 EFSKTALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEG 402 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR ++ I VL P + K + +L I S S+ L + Sbjct: 403 IQLRKNAVKSPILVLGYTSPKRIKELRRYSLTQSIISEGHAVALSQRKVA---IDCHLAI 459 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTL 185 DTG +RLG++ +D + F+ +S + SHL AD + Q+ F + Sbjct: 460 DTGMHRLGVTP--TIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQI 517 Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236 + + L SS GIL P+ ++ RPGI L G N+ Q ++ Sbjct: 518 LLELDQRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPIL 577 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +A++I R GE + YG +++ + V +IGY DG P +LS + S Sbjct: 578 TLKAQLITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLSNQEFCLS----- 632 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTT 353 +G +P +G I MDM + D++ +I + I+I D A T Sbjct: 633 -----YRGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEIL------TDWSDTAEQVQTI 681 Query: 354 NYDLLVRIGTRY-AKF 368 +L+ RIG R A+ Sbjct: 682 TNELICRIGPRVSARI 697 >gi|13488309|ref|NP_085891.1| alanine racemase [Mesorhizobium loti MAFF303099] gi|20137422|sp|Q981H7|ALR3_RHILO RecName: Full=Alanine racemase 3 gi|14028426|dbj|BAB54978.1| alanine racemase [Mesorhizobium loti MAFF303099] Length = 388 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 111/364 (30%), Positives = 177/364 (48%), Gaps = 18/364 (4%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL+A++ N+ +++AL R AAVVK +AYGLG K+A AL +AG FV ++ E Sbjct: 12 LEIDLSAIQANFQTISALVGPQVRVAAVVKSDAYGLGLVKVAGALIDAGCDLLFVGNLHE 71 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + LR A + V + LIPV+++ + + Y L Sbjct: 72 ALLLRSSHISAAVAVFCDEFARYGEHYRSNGLIPVVNNSVE---LDAICGAREPQAYFLN 128 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 V+TG +RLGL+ + K S+++SHLAC++ +N +Q RFR Sbjct: 129 VETGLSRLGLAFDDVRRRYLGGIFK-RRPPSVVLSHLACSERAGDAMNLLQWNRFRATSD 187 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 K SLA+S+G+ LG YHF + R G +LYG + +P++ VV +A+ + R Sbjct: 188 LLKPTLLSLAASAGVWLGKRYHFDMVRVGSALYGLNSAGIRPNPLKPVVGVKAKTLDARN 247 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 E V YG + R S +A+A IGY G P + S GY Sbjct: 248 VARSEAVGYGATFRTGRASRLAIAGIGYKHGLPWACANKIS-----------VRFAGYSA 296 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P++G+++M+ D+TD G +++ D +DD+A ++G ++L R+G Sbjct: 297 PLVGRVSMEYITIDVTDVPEALCGPGTNVELLSDDFTVDDLAASAGVHPQEVLTRLGVGC 356 Query: 366 AKFY 369 A+ Y Sbjct: 357 ARQY 360 >gi|290891219|ref|ZP_06554281.1| hypothetical protein AWRIB429_1671 [Oenococcus oeni AWRIB429] gi|290479183|gb|EFD87845.1| hypothetical protein AWRIB429_1671 [Oenococcus oeni AWRIB429] Length = 386 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 152/386 (39%), Gaps = 36/386 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFV 62 + + +DL A +N + + + AV+K + YGLG +A A A V Sbjct: 6 HRPTWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++++E ++LR I+VL K+ D +++ ++P L + L + Sbjct: 66 SNLDEALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVI---TIPSLAWLQNLPDFEGTL 122 Query: 123 PYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACAD---DPSSHVNSVQ 178 +L +DTG R+G E L + +H A AD + S Q Sbjct: 123 KVSLAIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQ 182 Query: 179 LERFRTLI--SHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINK----- 228 L R++ L + S+A+S+ + P F RPG + G + Sbjct: 183 LRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPP 242 Query: 229 SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + ++ + + + I +R + +SYG +++ D +A GY DG+ + Sbjct: 243 NLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQ---- 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLD 344 I G + I+G+ITMD TM + +G + + G I ++ Sbjct: 299 --------KSSVIINGKRMLIIGRITMDQTMVKLDRKYP--IGTRVTLIGKDGGEQITVE 348 Query: 345 DVALASGTTNYDLLVRIGTRYAKFYT 370 +VA S T ++ + R + YT Sbjct: 349 EVANYSHTIVDEIQTTLAPRIKRIYT 374 >gi|257869522|ref|ZP_05649175.1| serine/alanine racemase [Enterococcus gallinarum EG2] gi|20140922|sp|Q9X3P3|VANT_ENTGA RecName: Full=Serine/alanine racemase; AltName: Full=Vancomycin C-type resistance protein VanT gi|4545123|gb|AAD22403.1| serine racemase VanT [Enterococcus gallinarum] gi|257803686|gb|EEV32508.1| serine/alanine racemase [Enterococcus gallinarum EG2] Length = 698 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 38/376 (10%) Query: 10 KIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + TAL +N + + S + AVVK +AYG G +++AP L AG+ F V +++EG Sbjct: 343 EFSKTALLHNLQEIQRIISPKTKVMAVVKADAYGCGAKEVAPVLEQAGIDFFAVATIDEG 402 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR ++ I VL P + K + +L I S S+ L + Sbjct: 403 IRLRKNAVKSPILVLGYTSPKRIKELRRYSLTQSIISEGHAVALSQRKVA---IDCHLAI 459 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTL 185 DTG +RLG++ +D + F+ +S + SHL AD + Q+ F + Sbjct: 460 DTGMHRLGVTP--TIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFDQI 517 Query: 186 ISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM----QTVV 236 + + L SS GIL P+ ++ RPGI L G N+ Q ++ Sbjct: 518 LLELDQRQISYGITHLQSSYGILNYPDLNYDYVRPGILLTGSLSDTNEPTKQRVSLQPIL 577 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T +A++I R GE + YG +++ + V +IGY DG P +LS + S Sbjct: 578 TLKAQLITKRVVAKGEAIGYGQTAVANQETTVGVVSIGYCDGLPRSLSNQEFCLS----- 632 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTT 353 +G +P +G I MDM + D++ +I + I+I D A T Sbjct: 633 -----YRGQSLPQIGLICMDMLLIDLSHCPTIPIESEIEIL------TDWSDTAEQVQTI 681 Query: 354 NYDLLVRIGTRY-AKF 368 +L+ RIG R A+ Sbjct: 682 TNELICRIGPRVSARI 697 >gi|227431451|ref|ZP_03913500.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352817|gb|EEJ42994.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 370 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 148/375 (39%), Gaps = 25/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL++ +A+++N ++ +SG + VK NAYG G +A A G+ V Sbjct: 7 RPTRLEVSKSAVEHNITTVKNVSGADKVFLTVKSNAYGFGLIPMAQAAVAGGIYGLGVAV 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E + LR A I +L +++ +++ + S+ L ++ P Sbjct: 67 LDEAIALRHERITAPILILGISQVKYVELMAVQHIMATVVSLDWLEKAEHQLTGEQRLPV 126 Query: 125 ALQVDTGFNRLGLSLQE--ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +DTG R+G +E A + + + +H A +D + +QL R+ Sbjct: 127 TLGIDTGMGRIGFRDRETLAKAIQFVLDHADKFEYVGLSTHFAESDSSDTRYFQMQLTRW 186 Query: 183 RTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVT 237 L + S + + ++ R G LYG + ++ V+ Sbjct: 187 HQLTDDLPKPKYYHVANSGAAMYHAEEIPHEVVRVGTVLYGIEPSRGELADGRNLKPVMA 246 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + +++ AGE +SY Q T++ I IGY DG+ L G Sbjct: 247 LRSEVNFVKRLPAGESISYSHQYTTTQNEWIGTVPIGYGDGWLRKLMGF----------- 295 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 K I G PI+G++ MD M + G + G D ++DVA +G Sbjct: 296 -KVIIDGQYAPIVGQVAMDQLMIRLPREYP--EGTTVTFIGQDGDLENTIEDVAQFAGLA 352 Query: 354 NYDLLVRIGTRYAKF 368 +++ + R + Sbjct: 353 PWEITTGLQDRIHRI 367 >gi|229818028|ref|ZP_04448310.1| hypothetical protein BIFANG_03316 [Bifidobacterium angulatum DSM 20098] gi|229784632|gb|EEP20746.1| hypothetical protein BIFANG_03316 [Bifidobacterium angulatum DSM 20098] Length = 452 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 160/408 (39%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL A+++N + A G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKAMRDNMRHLVATVGGPQSGTAVMGVVKADAYGHGLLPSALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + + V S Sbjct: 84 TWLGTAQSHEALLLRQLGIGPDRCHILTWVYNGTAVPFDELIDNDIDVSVGSLAGIDAIA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADD 169 + G + ++VD+GF R G + + AL + + ++ SHLA AD Sbjct: 144 AAARKLGKAARVHVKVDSGFGRNGFTPEGFDAALAKLVQLAQEGVIEVIGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+ F K LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVESTERQIANFNAFTDRMKQAGIAPSIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQTV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG +++ A+ +GYA Sbjct: 264 GYEPDPAMGTPNTYKLKPAMRLQAQLGTVKDVEAGHGISYGRTYLTPQNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG + ++ + G++ MD + D+ S L I Sbjct: 324 DGIHRSASGFDMEGAKHVDKPGGPVRVMTKQGPHIYHVSGRVCMDQFILDLHGSAAELGI 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 AEGDTVELFGPGRGEEYGEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|257452886|ref|ZP_05618185.1| alanine racemase, biosynthetic [Fusobacterium sp. 3_1_5R] gi|257466749|ref|ZP_05631060.1| alanine racemase, biosynthetic [Fusobacterium gonidiaformans ATCC 25563] gi|315917898|ref|ZP_07914138.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563] gi|317059428|ref|ZP_07923913.1| alanine racemase [Fusobacterium sp. 3_1_5R] gi|313685104|gb|EFS21939.1| alanine racemase [Fusobacterium sp. 3_1_5R] gi|313691773|gb|EFS28608.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563] Length = 354 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 147/374 (39%), Gaps = 32/374 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID L++N + + V+K NAYGLG +A L G+ F V S+ Sbjct: 2 RAWVEIDTENLRHNIREIQKRAEGFGVWGVIKANAYGLGVLPVAKILAEEGIHYFAVASL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++R I +L + + + + +V + Sbjct: 62 EEAKEVRNANITGEILILGSLFHDEI---LEAESLDFHINVSCREELEWIAKNAPKTKIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERF 182 L++DTG RLG S QE ++ + L ++ + SH + AD S Q+ERF Sbjct: 119 LKIDTGMTRLGFSYQEGMEVIEFAKKLSL-NITGVFSHFSDADGNSQEAKEYTQKQIERF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + +S ++ + + R GI LYG + VVT + + Sbjct: 178 LPYATREDIPYRHIFNSGALIQYTDQKIGNMVRAGICLYGILGSTPIPS-FKNVVTLKTK 236 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ + VSYG KL + IGYADG L+ GGK Sbjct: 237 VLFKKTVTEETYVSYGRLCKLEKGETYVTLPIGYADGVKKYLAN-----------GGKVE 285 Query: 302 IKGYMVPILGKITMDMTMFDITD--SLSIEVGDYIQIFGPDI----KLDDVALASGTTNY 355 I G PI+G I MDM M I + IE+G + +F DI + + T + Sbjct: 286 ILGEACPIIGAICMDMMMVKIPENLVNKIEIGTEVSVFNNDIIRRNNISE------TCTW 339 Query: 356 DLLVRIGTRYAKFY 369 D+ +G R + Y Sbjct: 340 DMFTGLGRRVQRIY 353 >gi|325571360|ref|ZP_08146860.1| serine/alanine racemase [Enterococcus casseliflavus ATCC 12755] gi|325155836|gb|EGC68032.1| serine/alanine racemase [Enterococcus casseliflavus ATCC 12755] Length = 700 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 163/382 (42%), Gaps = 38/382 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + + AL +N + L + AVVK +AYG + +A L GV Sbjct: 337 LHLQRAAK-EFSAPALLHNLQEIKRLIPAKTKVMAVVKADAYGCDAQLVARTLERVGVDF 395 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V ++EE ++LR ++R+ +L + K + +LI I S + G Sbjct: 396 FAVATIEEAIELRRAGIKSRLLILGYTSAQRAKELNRYSLIQTIVSEAHGQALA---RTG 452 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NS 176 + L VDTG +RLG++ L+ + +++ I SHL +D + Sbjct: 453 LQIECHLAVDTGMHRLGVAPD--LETVRRLYALPSLKITGIFSHLGSSDQLDTASILRTQ 510 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q+ F L++ L SS GIL P + RPGI L G N+ Sbjct: 511 AQIICFDDLLAGLSARNIAYGLTHLQSSYGILNYPEKQYDYVRPGILLTGSLSVPNEPTK 570 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q ++T +A ++ + AGE + YG R + I + +IGY DG P LS Sbjct: 571 QKINVQPILTLKALLVDKKTVAAGEAIGYGLATVFDRPTTIGIVSIGYCDGVPRALSNQG 630 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV- 346 + S +G ++P +G I MDM + D+TD + V +++ + D Sbjct: 631 FQLS----------YQGVLLPQVGLICMDMLLIDLTDYPELAVESWLE------AISDWT 674 Query: 347 --ALASGTTNYDLLVRIGTRYA 366 A + T +L+ R+G+R Sbjct: 675 NTADQAQTIPNELISRLGSRVP 696 >gi|258651430|ref|YP_003200586.1| alanine racemase [Nakamurella multipartita DSM 44233] gi|258554655|gb|ACV77597.1| alanine racemase [Nakamurella multipartita DSM 44233] Length = 394 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 148/380 (38%), Gaps = 30/380 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNAR----TAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 E + +DL A+ N ++ AL + AVVK + YG G A A G Sbjct: 22 ERVAAVVDLAAITANVRTLLALMRGSNPAGSVMAVVKADGYGHGAVAAAQAALAGGATWL 81 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E ++LR + + + ++S QL V Sbjct: 82 GVATPTEALQLRAAGVDVPVLAWLWPPGERVAPALAAGVQLAVASRAQLDRVLDQAVGAV 141 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSV 177 ++VDTG R G+ E + + +SHLA AD P Sbjct: 142 P-DIHVKVDTGLGRGGVGPAEIGAVLDAVAAAQRAGRVRVAGLMSHLASADVPDDPSVPE 200 Query: 178 QLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q F +++ LA+++G++ P F L R GI YG + P+ Sbjct: 201 QTATFHRILAAAADRGIDPPLRHLANTAGLIDHPATRFDLVRVGIGGYGLNP-VATPVPL 259 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 +T A + L ++ AG VSYG + R++ +A+ +GYADG P S Sbjct: 260 TPAMTLRATVALTKRVPAGHGVSYGLTYRTDRETTLALIPLGYADGLPRAASNR------ 313 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G+ ++ G I G++ MD + D D + GD +FGP + D A Sbjct: 314 -----GEIWLAGARRRIAGRVAMDQVVVDCGDDP-VAAGDPAIVFGPGEQGEPTARDWAD 367 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 GT +Y+++ RIG R + Sbjct: 368 YCGTIDYEIVTRIGPRVPRR 387 >gi|322437297|ref|YP_004219509.1| alanine racemase [Acidobacterium sp. MP5ACTX9] gi|321165024|gb|ADW70729.1| alanine racemase [Acidobacterium sp. MP5ACTX9] Length = 375 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 162/386 (41%), Gaps = 46/386 (11%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +ID AL N+ ++ ++G A AV+K AYG G E+ AP L AG + VT E Sbjct: 4 WTEIDAAALTANYKAIQRVAG-AEVLAVIKARAYGHGAERCAPILVRAGARWLGVTCASE 62 Query: 68 GVKLRLY----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 G ++R +A I V+ G P I +LIPVI + + + G+ Sbjct: 63 GQQVRAALDHAGLEADILVMSGSLPKDVPAIVSAHLIPVIWTTDHIDLLA-----GIGCR 117 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++VDTG R G+ + L + +L + +H ++ +S++ Q F Sbjct: 118 VHVEVDTGMGRQGVRPGQDLATLLARISAAGLRLDGLFTHFCSSEVANSNLTLRQRALFE 177 Query: 184 TLISHYKGI---EASLASSSGILLGPNYH-----------------FQLTRPGISLYGGT 223 + A L +++ + + R G++LYG Sbjct: 178 AAVQQTVTAGLTPAWLHAANSSAVDNETPEPSSGDWLTTLAAAAGSQTMVRTGLALYGYC 237 Query: 224 DKIN------KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 I S +Q V+T +ARI+ +R G+ V Y +A+ +GYAD Sbjct: 238 LPIEGGALHHLSPALQPVLTWKARILAVRDLAPGDTVGYNATFIAGPAMKVALLPVGYAD 297 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 G LS G ++G+ PILG+I+M++T+ D+T + GD + Sbjct: 298 GLRRELS----------HPHGWVMVQGHPAPILGRISMNLTVVDVTAIPAASAGDEATLL 347 Query: 338 GPDIKLDDVALASGTTNYDLLVRIGT 363 GP I +D A + T +Y++L I Sbjct: 348 GPGITAEDHARLARTISYEILCGIHP 373 >gi|213585856|ref|ZP_03367682.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 316 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 19/328 (5%) Query: 47 KIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106 + A L + F V +EE ++LR I +L G + + Sbjct: 1 ETARTLPD--ADAFGVARLEEALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHN 58 Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLA 165 + + + +++DTG +RLG+ +EA F + K + Q I+SH A Sbjct: 59 QEQLAALEAVELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFA 118 Query: 166 CADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD- 224 AD+P QL+ F G + S+A+S GILL P HF RPGI LYG + Sbjct: 119 RADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPL 177 Query: 225 ---KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 Q V++ + +I +R AGE V YGG RD+ + V A+GY DGYP Sbjct: 178 EHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPR 237 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341 G + G VPI+G++ MDM D+ + GD + ++G + Sbjct: 238 AA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGL 286 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++ +A + + Y+L+ R+ +R A Y Sbjct: 287 PVERIAEMTKVSAYELITRLTSRVAMKY 314 >gi|163781726|ref|ZP_02176726.1| alanine racemase [Hydrogenivirga sp. 128-5-R1-1] gi|159882946|gb|EDP76450.1| alanine racemase [Hydrogenivirga sp. 128-5-R1-1] Length = 348 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 31/360 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67 L+I +A++ N + G + AV+K +AYG+G + +AP L V+ F V VEE Sbjct: 16 LRIKRSAVEENVRELFRF-GGKKLIAVIKSDAYGIGVKYVAPILRELPEVESFAVACVEE 74 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 GV LR + + +L GI P + + + + L PV+S + L + ++ Sbjct: 75 GVLLREMGIKREVLILGGILPEELEAVKEYGLTPVVSDIEHLKII-----GNEDIKFHVK 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 DTG RLG + D L AD+ + Q+ERF ++ Sbjct: 130 YDTGMGRLGFVDEFVDDPRVVGIMSHLSTP---------ADE---EFSRKQIERFEAIVR 177 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 Y SS ++ + R G+++YG ++ V+ AR++ ++ Sbjct: 178 RYSRKIKVHLESSAGVIYRVPYTTHIRVGLAIYGEKPLKEYPLRLRPAVSIRARVLSLKT 237 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 AG +SYG R+ I V A GYADG +LS G +G + Sbjct: 238 LPAGHPISYGRTFVTEREMRIGVIAFGYADGLMKSLSNR-----------GYLLYEGNKL 286 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 PI+G ITMDMT+ D+ + ++ VGD++ + + ++A +GT Y+L+ + +R + Sbjct: 287 PIVGNITMDMTIVDVG-TANVRVGDWVTVVSEERTFGELAREAGTIPYELMCNVSSRVKR 345 >gi|258510371|ref|YP_003183805.1| alanine racemase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477097|gb|ACV57416.1| alanine racemase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 400 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 94/401 (23%), Positives = 159/401 (39%), Gaps = 61/401 (15%) Query: 5 EFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L IDL L +N + L A VK +AYG G + L GV V Sbjct: 3 RPLFAVIDLAHLSHNIRYLKSRLRPGASLMVAVKADAYGHGVRAVVGRLVREGVHHVAVA 62 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S+EE +++R + I VL + P + + ++ + + ++ Sbjct: 63 SLEEALEIRAFHRGVNILVLGAVTPDACMKAAEAEVEIALTDL---SPIDEIPRLPKRLR 119 Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +DTG NRLG+ EA+ ++ +L +HLA AD + Q+ER Sbjct: 120 VHLPLDTGMNRLGVKRTDEAVALARAIAKREDLELVGAGTHLAAADAEDPAHAAGQMERL 179 Query: 183 RTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTV 235 + + + +S+ +L P +H + R GI+ YG + + + ++ V Sbjct: 180 GAFVRALEQAGLRPPRIHAGNSAALLRNPAWHLDMVRVGIAAYGYSPDPSVLPAPSLRPV 239 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ A ++ + +A GE V YG +TR IA A GYADGYP LS Sbjct: 240 MSLYAGVLRVAQAQPGETVGYGATFTVTRPMTIATVAGGYADGYPRHLSNE--------- 290 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL------------ 343 G+ ++G P++G++ MD M D+T + GD + +FG D Sbjct: 291 --GEVLVRGEFRPVIGRVCMDQLMVDVTGL-DVATGDVVALFGYDAPALWRAGWWSRLRP 347 Query: 344 DD-------------------------VALASGTTNYDLLV 359 ++ +A + T Y++L Sbjct: 348 EERVARVQETYRMASNLGERRVLSLHRLAERAQTIPYEILC 388 >gi|291517241|emb|CBK70857.1| alanine racemase [Bifidobacterium longum subsp. longum F8] Length = 452 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|317482523|ref|ZP_07941538.1| alanine racemase domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316915945|gb|EFV37352.1| alanine racemase domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 452 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|13475189|ref|NP_106753.1| alanine racemase [Mesorhizobium loti MAFF303099] gi|20137424|sp|Q98A05|ALR1_RHILO RecName: Full=Alanine racemase, biosynthetic gi|14025940|dbj|BAB52539.1| alanine racemase [Mesorhizobium loti MAFF303099] Length = 397 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 111/364 (30%), Positives = 183/364 (50%), Gaps = 18/364 (4%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L+IDL A++ N+ ++ L G+ + AAVVK +AYGLG IA L +AG FV +++E Sbjct: 13 LEIDLAAIRANFQKISTLVGDKVKVAAVVKSDAYGLGLVDIARTLIDAGCDLLFVANLDE 72 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + LR + I V LIPV+++ + + G Y L Sbjct: 73 ALLLRSSFSRVAIAVFRDEFDRFGTWYRSHGLIPVVNN---CKELHAVGTAGEPQSYFLN 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 V+TGF+R GLS+ + + + + S+++SHLAC + S +N +Q +RFRT+ Sbjct: 130 VETGFSRFGLSVGDIQRE-YLLRTFERYRPSIVLSHLACGECISDPMNQLQRDRFRTVYD 188 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 K SL++S+G+ LG +YHF + R G +LYG + +++P++ VV ARI+ +R Sbjct: 189 LLKPTRGSLSASAGVWLGKSYHFDMVRVGSALYGIHNAGVQTNPLKPVVKLRARILDVRS 248 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 AGE V YG + R S +A+ IGY G P + + Sbjct: 249 VPAGEAVGYGATFRTDRASRVAIVGIGYKHGLPWSCANKIFVRLAEYS-----------A 297 Query: 308 PILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRY 365 P +G+I+M+ + DITD + G + ++ D ++D+ A+G + + L R+G Sbjct: 298 PSIGRISMEYMIIDITDVPARRCSPGTFAELLSEDFTVNDLGAAAGVSPQEALTRLGAGC 357 Query: 366 AKFY 369 + Y Sbjct: 358 TRKY 361 >gi|23465715|ref|NP_696318.1| alanine racemase [Bifidobacterium longum NCC2705] gi|23326396|gb|AAN24954.1| alanine racemase [Bifidobacterium longum NCC2705] Length = 452 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|20140680|sp|Q93A44|VANTE_ENTFA RecName: Full=Amino-acid racemase; AltName: Full=Vancomycin E-type resistance protein VanT gi|16612081|gb|AAL27444.1|AF430807_9 VanTE [Enterococcus faecalis] Length = 702 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 150/367 (40%), Gaps = 27/367 (7%) Query: 10 KIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +I +A+ +N + + + N VVK NAYG G ++A L G+ F V ++EE Sbjct: 347 EISASAIHHNINEIRKIIPKNTNIMGVVKANAYGCGMVEVAYELEKIGISFFCVATIEEA 406 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + LR Q I +L HP + I NLI I S + + LQV Sbjct: 407 IALRKSGNQGDILILGYTHPNRINDIKKYNLIQSIVSEEHGKVLN---LKKIPIRCHLQV 463 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERFRTLIS 187 DTG +RLG++ + F+ + + + + S + Q+ F ++S Sbjct: 464 DTGMHRLGVTPNVTIIQQMYLFSNLKIEGIYSHLGSSDSLEQESIARTNTQIFLFNNILS 523 Query: 188 --HYKGI---EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 GI + SS GIL P F R GI YG N + + ++ Sbjct: 524 DLEQMGISYGYTHIQSSYGILNYPELSFDFVRIGILCYGFLSDYNSPTKIPIDLQPIVKV 583 Query: 243 I----LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 R AGE V YG K+ + + I V +IGYADG P LS Sbjct: 584 KASLITERIVEAGEYVGYGLGAKVEKRTRIGVVSIGYADGIPRALSNAKLTLE------- 636 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 KG + +G I MDM + D+++ I + D + + + +A T +LL Sbjct: 637 ---FKGQSIKQIGNICMDMMLVDLSEVEDISLNDELIVL---PNISKIADEEQTITNELL 690 Query: 359 VRIGTRY 365 R+G+R Sbjct: 691 SRLGSRL 697 >gi|322688667|ref|YP_004208401.1| alanine racemase [Bifidobacterium longum subsp. infantis 157F] gi|320460003|dbj|BAJ70623.1| alanine racemase [Bifidobacterium longum subsp. infantis 157F] Length = 452 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + ++L +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVNLKTMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|322690655|ref|YP_004220225.1| alanine racemase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455511|dbj|BAJ66133.1| alanine racemase [Bifidobacterium longum subsp. longum JCM 1217] Length = 452 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 157/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + SHLA AD Sbjct: 144 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKGGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|188996146|ref|YP_001930397.1| alanine racemase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931213|gb|ACD65843.1| alanine racemase [Sulfurihydrogenibium sp. YO3AOP1] Length = 324 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 159/340 (46%), Gaps = 27/340 (7%) Query: 35 VVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKI 93 +VK +AYG ++ L ++ F V + EG +LR I +L G+ + +I Sbjct: 1 MVKADAYGHNAVLVSKYLQELDFIESFCVATPLEGKELRENGIFKNILILGGVLKEEIEI 60 Query: 94 IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153 + NLIPVIS QL + L+ DTG RLG L+ K Sbjct: 61 LNQYNLIPVISDFNQLEI----ARKLKNRKIHLKFDTGMRRLGFYLENVDKIKPL---LK 113 Query: 154 LGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQ 211 ++ +++HL+ AD Q++ F+ +++ K + +S+G++ ++ Sbjct: 114 EFEIEGVLTHLSSADTDR-EYTINQIKEFKEILNLLDVKPKYIHVQNSAGVVYECDF-CN 171 Query: 212 LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271 + R G+++YG + ++ V++ +++II I+ +G+ VSY G + +A+ Sbjct: 172 VIRVGLAMYGEKPFESYPIELKQVMSVKSKIISIKDVKSGDRVSYNGSFVAKKPMKVAIV 231 Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331 GYADG P +LS + G PILGKITMDMT+ D+++ +I +G Sbjct: 232 PFGYADGLPRSLSNRWFF-----------LVNGKEAPILGKITMDMTIVDVSEIENINIG 280 Query: 332 DYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 + + I G I D+A GT +Y+++ I R + Sbjct: 281 NEVVIVGESGNKRITFGDIANIVGTISYEIMCGISKRVVR 320 >gi|227546323|ref|ZP_03976372.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213304|gb|EEI81176.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 452 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + ++L +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVNLKTMRDNMAHLISVVGGPNSGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|148273758|ref|YP_001223319.1| putative alanine racemase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831688|emb|CAN02657.1| putative alanine racemase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 385 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 79/378 (20%), Positives = 142/378 (37%), Gaps = 28/378 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +ID A+ N ++ A +G AVVK + YG G A A G V V E Sbjct: 17 ARIDTGAISANVRALRAATGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDVREA 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 + LR A + + ++ ++S+ Q G + L+ Sbjct: 77 LALRAAGIDAPVLTWMHAPGADFATAIEADVDLGLNSLRQVREVAEAARRVGRTAEVHLK 136 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG R G++ E + + + + Q+ F + Sbjct: 137 VDTGLGRNGVTPAEWPAVVAEVQALVAEGRIHLGGVFSHLANAGREEDRAQVRAFHQSVD 196 Query: 188 --HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 G+E LA+++G L P + R GI +YG + + + +T Sbjct: 197 VVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGVTSADLGLVPAMTLV 256 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++ +++ A VSYG + + + +A+ ++G+ADG P S Sbjct: 257 GSVVAVKRVPADTGVSYGYTYRTSSATTLALVSLGFADGVPRLASNR-----------AP 305 Query: 300 GFIKGYMVPILGKITMDMT----MFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 I G + G+I MD + D + + VGD +FG +++ A A+G Sbjct: 306 VAIHGARFRVSGRIAMDQFVVDVGDGVVDGIPVAVGDDAVLFGDPATGAPSVEEWAEATG 365 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ R+ R + + Sbjct: 366 TIGYEIVARVAGRVTRRF 383 >gi|312133175|ref|YP_004000514.1| alr [Bifidobacterium longum subsp. longum BBMN68] gi|311772373|gb|ADQ01861.1| Alr [Bifidobacterium longum subsp. longum BBMN68] Length = 450 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 22 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 81 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 82 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 141 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 142 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 201 Query: 170 P----SSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 202 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 321 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 381 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 382 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429 >gi|239622329|ref|ZP_04665360.1| alanine racemase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514326|gb|EEQ54193.1| alanine racemase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 452 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 P----SSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|254492138|ref|ZP_05105313.1| alanine racemase [Methylophaga thiooxidans DMS010] gi|224462690|gb|EEF78964.1| alanine racemase [Methylophaga thiooxydans DMS010] Length = 334 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 20/339 (5%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 +V+K +AYG G A AL + F V ++EGV LR + I +L G++ Q+ Sbjct: 1 MSVIKADAYGHGAITAAEALKES--DAFAVARLKEGVFLRQKGVEHPIVLLEGVNTEQDF 58 Query: 93 IIF-DTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD-FTHNSF 150 I + L PVI Q+ L L VD+G +RLG+ ++ T + Sbjct: 59 ITASEYQLSPVIHLHSQIQLLQTLTLPKPLAFNWLMVDSGMHRLGIRPEQVEMALTLLAE 118 Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHF 210 + + ++SH A +D N QL + H + LA+S+ ++ H Sbjct: 119 SSNISGEVGLMSHFANSDLDGDPRNQKQLAHMLA-LKHKTSLPLCLANSAAVICLAESHQ 177 Query: 211 QLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL 267 Q RPG+ LYG + +KS ++ V+T + ++I + G+ V YGG+ + Sbjct: 178 QWVRPGLMLYGVSPFSDKSGTELGLKPVMTLKTQLIAVYDLEVGDQVGYGGEWTAEVPTR 237 Query: 268 IAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327 I VA+IGY DGY LS + I+G P++G+++MD ++ Sbjct: 238 IGVASIGYGDGYSRHLSN-----------KAEVIIRGIKAPVIGRVSMDTICINLNHVEQ 286 Query: 328 IEVGDYIQIFG-PDIKLDDVALASGTTNYDLLVRIGTRY 365 E GD + ++G ++ ++ +A + T Y+L+ + R Sbjct: 287 AETGDDVIVWGTANLAVEQLATLAETIPYELVTVLCQRV 325 >gi|332295096|ref|YP_004437019.1| Alanine racemase [Thermodesulfobium narugense DSM 14796] gi|332178199|gb|AEE13888.1| Alanine racemase [Thermodesulfobium narugense DSM 14796] Length = 352 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 158/365 (43%), Gaps = 18/365 (4%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+IDL A+ +N+ + + V+K NAYG+G +A AL + + +E Sbjct: 3 PWLEIDLDAILSNYKIIKEYV-KSDLIPVIKSNAYGMGLIPVANALKDV-ANLIAIGDIE 60 Query: 67 EGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 E LR + + ++ I + ++ + N+ I S +F S + G + Sbjct: 61 EAQTLRRSGFEGNLLLIVPIFSREEAELCVEYNVFTAIDSFDMASFLSDIAKKSGKTVGV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VD G +R G+ +E +F QL I SH + + QL F Sbjct: 121 HVKVDIGMHRFGVKPEELDNFIKQISYLPNIQLMGIFSHFPLG---LNLITEEQLILFDR 177 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + YK + L +S + + R G+ +YG KS ++ VV +A I+ Sbjct: 178 ISEKYKNLIVHLPNSQNTVENFESLKFIPRCGLLIYGAMPSDVKSFVLKNVVKLKANIVK 237 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 I AG+ SYG +DS IAV +IGYADG LS S +KG Sbjct: 238 IHDISAGQSWSYGYSYTAHKDSKIAVISIGYADGLKRALSNKWSAK-----------VKG 286 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 + P+ G I M+ + DIT ++ VGD + D+K++D+A T +++LV Sbjct: 287 SICPLRGTINMNFSFVDITGVDNVRVGDEAILLDEDLKIEDMAKTIDTVPHEILVSFRES 346 Query: 365 YAKFY 369 + Y Sbjct: 347 MKRIY 351 >gi|320459028|dbj|BAJ69649.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 450 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + ++L +++N + ++ G VVK +AYG G A A G Sbjct: 22 RRQYPAQAIVNLKTMRDNMAHLVSVVGGPTSGTAVMGVVKADAYGHGLLPTALAALAGGA 81 Query: 58 QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS--- 113 E + LR R +L ++ G D + SV L+ Sbjct: 82 TWLGTAQSHEALLLRRLGIGPDRCHILTWVYNGAAAPFDDLIAADIDVSVGSLSGIEALA 141 Query: 114 -KLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G ++VD+GF R G + AL + + ++ SHLA AD Sbjct: 142 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAALVPLAKEGVLRIVGQWSHLAVADS 201 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+ F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 202 PDVPEFVASTDQQIATFKDFTRRMELAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 321 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTAEGPRLYRVCGRVCMDQFIVDLHGSAAELGV 381 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FG + DD A A+ T +Y++ + R + Y Sbjct: 382 HEGDTVELFGAGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429 >gi|213692856|ref|YP_002323442.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524317|gb|ACJ53064.1| alanine racemase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 452 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + ++L +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVNLKTMRDNMAHLVSVVGGPTSGTAVMGVVKADAYGHGLLPTALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS--- 113 E + LR R +L ++ G D + SV L+ Sbjct: 84 TWLGTAQSHEALLLRRLGIGPDRCHILTWVYNGAAAPFDDLIAADIDVSVGSLSGIEALA 143 Query: 114 -KLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G ++VD+GF R G + AL + + ++ SHLA AD Sbjct: 144 AAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAALVPLAKEGVLRIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+ F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDQQIATFKDFTRRMELAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTAEGPRLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FG + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGAGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|319779475|ref|YP_004130388.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9] gi|317109499|gb|ADU92245.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9] Length = 393 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 148/399 (37%), Gaps = 51/399 (12%) Query: 5 EFLRLKIDLTALKNNWHSM----NALSGNA----RTAAVVKDNAYGLGCEKIAPALYN-- 54 ++ + L +N H + N +T AVVK NAYG G A Sbjct: 3 RPIKAILHTNNLASNLHQITSSVRNYPKNTNKTIKTLAVVKANAYGHGLG----AAIEGF 58 Query: 55 AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFY- 112 A + + + LR I +L G ++ + + + S Q+ + Sbjct: 59 ADADGLGLIDLVDAEVLRKKGNTQEILLLEGFFHKQDIDVLLEGGISTALHSPYQIAYLK 118 Query: 113 --------SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLII 161 + ++ +TG NRLG EA + K L + Sbjct: 119 ERLSEMAKESIAKDLKKINLFIKFNTGMNRLGFKPSEAHEIYDQIKTLKSTGLIGTVGTM 178 Query: 162 SHLACADDPSSHVNSVQL-ERFRTLISHYKG--IEASLASSSGILLGPN----YHFQLTR 214 H A AD V + + F+ ++G + S+ +S+ + P R Sbjct: 179 MHFANADSDDHEVQVHTIVDDFKKNCLEFEGRKVPVSICNSAACMRFPELASISGTNWIR 238 Query: 215 PGISLYGGTDKINKS-----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 PG LYG + ++ ++ A +I I+ G+ V YG + T+ S IA Sbjct: 239 PGCVLYGSQYFDYRDSEFTKLDLKPGMSLVADVIAIQNLKVGDSVGYGSKFTATKPSKIA 298 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329 + A GYADGYP + + + G + G+++MDM D+T + Sbjct: 299 IIACGYADGYPRSADN-----------NTEVGVLGKRAKLAGRVSMDMIAIDVTHIPEVN 347 Query: 330 VGDYIQIFGP-DIKLDDVALASGTTNYDLLVRIGTRYAK 367 +G + ++G +D+VA SG Y+L+ I R K Sbjct: 348 IGTPVVLWGEGGPSIDEVAKMSGRIAYELMCGIAPRVPK 386 >gi|20137245|sp|Q9RER4|ALR_AQUPY RecName: Full=Alanine racemase gi|6665784|gb|AAF23014.1|AF212103_1 alanine racemase [Aquifex pyrophilus] Length = 341 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 164/364 (45%), Gaps = 31/364 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVT 63 L+I + +N ++ SG R AVVK NAYG+G +++ L V F V Sbjct: 2 RRAVLEILEERIIHNVKEIHRFSGK-RIIAVVKANAYGIGVREVSRILEGLEEVDAFAVA 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +EGV+LR + +I +L GI K++ + +L PVIS L + Sbjct: 61 CTQEGVELRECGIKKKILILGGILEEDVKLLEEYDLTPVISDPEHLKVL-----KDRNIK 115 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + ++ DTG RLG + + K ++ ++SH + D + + +Q++RF Sbjct: 116 FHVKYDTGMGRLGFTNE----------IIKDPRVEGVMSHFSSPADRN--FSKLQIKRFE 163 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 ++ +Y+ ++ SS L+ R G+++YG + ++ + AR+I Sbjct: 164 EILKNYEKVKYIHLESSAGLIYRVPFTTHVRVGLAIYGEKPLKDYPLEVKPALRLRARLI 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +++ VSYG R + + V A GYADG TLS + Sbjct: 224 SVKELPENYPVSYGRTYITKRKTKLGVVAFGYADGLMKTLSNRSFL-----------IFE 272 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G VPI+G ITMDMTM D++ + GD++ I + +A +GT Y+++ + Sbjct: 273 GRKVPIIGNITMDMTMVDLSGT-EARTGDWVYIVNEERSFTPLARDAGTIPYEIMCNLSR 331 Query: 364 RYAK 367 R + Sbjct: 332 RVER 335 >gi|149184540|ref|ZP_01862858.1| alanine racemase [Erythrobacter sp. SD-21] gi|148831860|gb|EDL50293.1| alanine racemase [Erythrobacter sp. SD-21] Length = 345 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 186/369 (50%), Gaps = 26/369 (7%) Query: 1 MHSNEFLRLKIDLT--ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M S L++DL AL NW +++ +SG+AR A VK + YGLG E P L +AG Sbjct: 1 MSSLPPPTLRLDLDREALAANWRALDRMSGSARAGAAVKADCYGLGVEHCVPVLRDAGCG 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 DFFV E + + A++ VL+G G E + + Sbjct: 61 DFFVAHWSEVAAVVEHVDAAQVAVLHGPLDGNEVAYARETGALPVIDSVRQAKLWAESGG 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G P L VD+G NRLG+S QE + + + ++ ++SHLACAD+ S +N+ Q Sbjct: 121 G---PCHLMVDSGINRLGISPQEISNPVVQALDVQV-----LLSHLACADE-DSPMNARQ 171 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 LE FR I + E SLA+S+GI LG +YHF LTRPG++LYGG + + + VV Sbjct: 172 LETFRDAIQRVEHCETSLANSAGIALGSDYHFDLTRPGLALYGGVPRPELADHIGQVVFP 231 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +A II R+ AG+ V Y + + V ++GYADG + G Sbjct: 232 KAAIIQTRQLSAGDGVGYNATFTAPVEMRVGVLSLGYADGILRSWGGAAFRSGE------ 285 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 +PILGK++MDM + D++D+ + GD++++ L D A + T Y+LL Sbjct: 286 ------KRLPILGKVSMDMIVIDLSDAPELGEGDWVEL---PYHLPDAAQQTSLTQYELL 336 Query: 359 VRIGTRYAK 367 +G R+A+ Sbjct: 337 TVLGNRFAR 345 >gi|170780959|ref|YP_001709291.1| alanine racemase [Clavibacter michiganensis subsp. sepedonicus] gi|169155527|emb|CAQ00639.1| alanine racemase [Clavibacter michiganensis subsp. sepedonicus] Length = 385 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 82/379 (21%), Positives = 149/379 (39%), Gaps = 28/379 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +IDL A+ N ++ A +G AVVK + YG G A A G V + E Sbjct: 17 ARIDLGAISTNVRTLRAAAGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDIREA 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQ 127 + LR +A I + + ++S+ Q+ ++ G + L+ Sbjct: 77 LALRAAGIEAPILTWMHAPYADFATAIEAGIDLGLNSLRQVREAAEAARRVGRTAEVHLK 136 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VDTG R G++ E + + + + Q+ F + Sbjct: 137 VDTGLGRNGVTPAEWPGVVAEVAALVAEGRIHLGGVFSHLANAGEDEDRAQVRAFHEAVD 196 Query: 188 --HYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTVVTAE 239 G+E LA+++G L P + R GI +YG + + + +T Sbjct: 197 VVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGVTSADLGLVPAMTLV 256 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ++ +++ A VSYG + T + +A+ ++G+ADG P S Sbjct: 257 GSVVAVKRVPADTGVSYGYTYRTTSATTLALVSLGFADGVPRLASNR-----------AP 305 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSL----SIEVGDYIQIFGP----DIKLDDVALASG 351 I G + G+I MD + D+ D + + VGD +FG +++ A A+G Sbjct: 306 VAIHGARFRVSGRIAMDQFVVDVGDGVVDGRPVAVGDDAVLFGDPATGAPSVEEWAEATG 365 Query: 352 TTNYDLLVRIGTRYAKFYT 370 T Y+++ R+ R + ++ Sbjct: 366 TIGYEIVARVAGRVTRRHS 384 >gi|189439769|ref|YP_001954850.1| slanine racemase [Bifidobacterium longum DJO10A] gi|189428204|gb|ACD98352.1| Alanine racemase [Bifidobacterium longum DJO10A] Length = 450 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 22 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 81 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 82 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 141 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 142 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 201 Query: 170 P----SSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 202 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 261 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 262 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTLDNTSTAIVPLGYA 321 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 322 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 381 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 382 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 429 >gi|46190837|ref|ZP_00120988.2| COG0787: Alanine racemase [Bifidobacterium longum DJO10A] Length = 452 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 P----SSHVNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVSEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTLDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKIYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|294011685|ref|YP_003545145.1| alanine racemase [Sphingobium japonicum UT26S] gi|292675015|dbj|BAI96533.1| alanine racemase [Sphingobium japonicum UT26S] Length = 348 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 183/364 (50%), Gaps = 25/364 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 LRL++D AL +NW + G+A A +K + YGLG ++ L AG +DFFV++ Sbjct: 7 PLRLRMDEGALLSNWRWLKRQGGDAACGAAIKADGYGLGAVEVMRRLLGAGCRDFFVSNW 66 Query: 66 EEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E L + VL+G+ + + PV+ + Q+ + P Sbjct: 67 AEAAVLEPLVTEGVSLSVLHGVREEDLAVALASRARPVLCTEWQIARWRH----AGGGPC 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VDTG NRLG +++ ++SHLACAD+ ++ QLERF Sbjct: 123 DVMVDTGMNRLG-----LDWRGDVPARLAGLEIATLMSHLACADE-DGPLSPAQLERFSA 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 L K SLA+S+GI +G +Y F +TRPGI+LYGG + + ++ VV EA+++ Sbjct: 177 LRGQVKAARYSLANSAGICMGADYAFDMTRPGIALYGGVPRREAAGHIRQVVVPEAQVLQ 236 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R+ AG+ + Y + +D IAV +GYADGY SG S + G Sbjct: 237 RRRVRAGDTIGYNATYRAPKDMQIAVLNLGYADGYLRCFSGRGSMSA-----------GG 285 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P++G+I+MD+T D++ I D++++ D KL D A ASG + Y+LL +G R Sbjct: 286 RHLPVVGRISMDLTAVDVSGLPDISEEDWLEV---DYKLVDAAAASGLSQYELLTGLGAR 342 Query: 365 YAKF 368 + + Sbjct: 343 FDRV 346 >gi|148552942|ref|YP_001260524.1| alanine racemase [Sphingomonas wittichii RW1] gi|148498132|gb|ABQ66386.1| alanine racemase [Sphingomonas wittichii RW1] Length = 348 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 118/368 (32%), Positives = 184/368 (50%), Gaps = 26/368 (7%) Query: 3 SNEFLRLKIDLT--ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + EFL L++DL AL NW + + AA+ +AYGLG +++ L +AG +DF Sbjct: 2 TQEFLPLRLDLDPQALVANWRWLGERAAAPAGAAIK-ADAYGLGAVEVSRRLADAGCRDF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FV + E L A + VL+G+ + PV++S ++ + Sbjct: 61 FVATWAETEALGSLPFGAGLSVLHGLREEDLAAALASRARPVLNSP---AMVARWKAAAP 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 P + +DTG NRLGL+++EA S ++ L++SHLACAD+P S +N Q Sbjct: 118 GRPCDVMIDTGMNRLGLTVEEA-----CSGLLDGLEIDLLLSHLACADEPDSPMNERQRA 172 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RF L SLA+S+G LGP Y F L RPGI+LYGG + + VV EA Sbjct: 173 RFVDLRGRVAAKRHSLANSAGACLGPAYGFDLIRPGIALYGGIPRPEARGHIVRVVRIEA 232 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 +++ +R AG+ + YG R +A+ +GYADGY +G G Sbjct: 233 QVLQVRDVPAGDTIGYGATFTAERPMRVAILNLGYADGYLRAFAG-----------NGAA 281 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G P+ G+++MD+ D+T + GD+++I D L+ A +G + Y+LL Sbjct: 282 LVNGRRCPLAGRVSMDLIAVDLTGA-DAAEGDWLEI---DYALESAADRTGLSQYELLTG 337 Query: 361 IGTRYAKF 368 +G+RY + Sbjct: 338 LGSRYQRR 345 >gi|161779848|gb|ABX79410.1| VanTc4 [Enterococcus casseliflavus] Length = 700 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 160/364 (43%), Gaps = 31/364 (8%) Query: 15 ALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73 AL +N + + + + AVVK +AYG + +A L AGV F V ++EE ++LR Sbjct: 350 ALLHNLQEIKRVIPSTTKVMAVVKADAYGCDAKTVAGTLERAGVDFFAVATIEEAIELRR 409 Query: 74 YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133 ++R+ +L + K + +LI + S + G+ L VDTG + Sbjct: 410 AGIKSRLLILGYTSAQRAKELNRYSLIQTVVSEAHGQALA---RTGLPIECHLAVDTGMH 466 Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190 RLG++ L+ F +++ I SHL +D + Q+ F L++ Sbjct: 467 RLGVAPD--LETVRKLFALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524 Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEAR 241 L SS GIL P H+ RPGI L G N+ +Q ++T +A Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ + AGE + YG R + I + +IGY DG P LS + S Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLS---------- 634 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 +G ++P +G + MDM + D+TD + V +++ A + T +L+ R+ Sbjct: 635 YQGVLLPQIGLVCMDMLLIDLTDYPELAVESSLEVISDWTTA---ADQAQTITNELISRL 691 Query: 362 GTRY 365 G+R Sbjct: 692 GSRI 695 >gi|299139893|ref|ZP_07033065.1| alanine racemase [Acidobacterium sp. MP5ACTX8] gi|298598247|gb|EFI54413.1| alanine racemase [Acidobacterium sp. MP5ACTX8] Length = 385 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 161/383 (42%), Gaps = 37/383 (9%) Query: 8 RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I L N+ ++ A++G AV+K NAYG G AP L AG Q V+ V Sbjct: 4 WIEISSARLAENFRAIQAVAGQGVEALAVIKANAYGHGTTICAPVLAEAGAQWLGVSDVA 63 Query: 67 EGVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123 EG +R P R+ V+ G+ + L PV+ + + + G Sbjct: 64 EGEAVRTALPHSGIRVLVMCGMELADAPALVAHGLTPVVWTPEHIAALERAARSAGHRIQ 123 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG R G + ++ + + I++HL C++ + + Q ERF Sbjct: 124 VHLEVDTGMGRQGAAPGEDLARTLEALADSRWVSCEGIMTHLCCSESAEAKITEEQRERF 183 Query: 183 RTLISH-----YKGIEASLASSSGILLGPNYHF-----------QLTRPGISLYGGTDKI 226 + + + LA++S + G + + R G ++YG +I Sbjct: 184 ASALDQALAAGMRPEFVHLANTSAVDEGSTMQWIRDTAKSLGARAMVRIGFAIYGHCLEI 243 Query: 227 NKSH--------PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 H + V+ + RII +R AG V YG T+ +A+ +GYADG Sbjct: 244 EGEHAHAGALAPKVSPVLVWKTRIIGLRGVAAGATVGYGATFVATQPMRLALLPVGYADG 303 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 Y S S G I G P++G+++M++T+ D++ ++ G + G Sbjct: 304 YRRAAS--------SGVGNGWVMIAGRRAPVVGRVSMNLTVVDVSGHADVQEGMEAVLLG 355 Query: 339 PDIKLDDVALASGTTNYDLLVRI 361 + +D A SGT YD+L I Sbjct: 356 EGVTAEDQARWSGTIAYDILCGI 378 >gi|310287816|ref|YP_003939074.1| Alanine racemase [Bifidobacterium bifidum S17] gi|309251752|gb|ADO53500.1| Alanine racemase [Bifidobacterium bifidum S17] Length = 452 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL L++N + + G VVK +AYG G A A G Sbjct: 24 RRRYPAQAIVDLATLRDNMAHLVDVVGGPHSGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G+ +++I + I V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGMDVPFDELIDNDIDISVGSLAGIDALA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G ++VD+GF R G + AL ++ + + SHLA AD Sbjct: 144 DAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F + LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDRQIESFTEFTRRMEAAGIAPEIRHLANTAATLNRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG VSYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D + + V GG + ++ + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMQGAKHVEKAGGPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431 >gi|296453703|ref|YP_003660846.1| alanine racemase [Bifidobacterium longum subsp. longum JDM301] gi|296183134|gb|ADH00016.1| alanine racemase [Bifidobacterium longum subsp. longum JDM301] Length = 452 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + ++L +++N + ++ G VVK +AYG G A A G Sbjct: 24 RRQYPAQAIVNLETMRDNMAHLVSVVGGPNSGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G +++I + V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGTEVPFDELIAADIDVSVGSLPGIDAVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 + G ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 AAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAKEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYK--GIEA---SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + GI LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANTAATLDRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +A++ ++ AG +SYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGISYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D E + V GG I + + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMEGAKHVEKPGGPLRIMTTEGPKLYRVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTCLRNRIPRLY 431 >gi|241762419|ref|ZP_04760497.1| alanine racemase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373013|gb|EER62671.1| alanine racemase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 349 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 23/365 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + LRL++D +AL NW S+N ++ A +K N YGLG E++ L AG +DF Sbjct: 1 MQISSPLRLELDKSALMANWQSLNRITAG-HCGAAIKANGYGLGAERVRHYLAQAGCRDF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FV+S +E L + VL+G+ ++++ PV+ S ++ + Sbjct: 60 FVSSWDEARLLDSSEKDFSLSVLHGLREDDLGYALNSSVKPVLCSP---AMIARWKAHAP 116 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P + VDTG NRLGLS++EA + I+SHLACAD+ +N QLE Sbjct: 117 NRPCDVMVDTGMNRLGLSMEEAGSGL-----LDGLSIDNILSHLACADEADHPLNQKQLE 171 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RFR L + + SLA+S+GI L +YHF L RPG++LYGG ++ VV A Sbjct: 172 RFRILAARKQAKRYSLANSAGIFLSKDYHFDLARPGLALYGGLPVPQSKDILKPVVAIAA 231 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I +R+ AGE + YG + +A+ +GYADGY F G Sbjct: 232 QAIQVREVSAGEAIGYGACFVTPKKMRVAILHVGYADGYWRAF-----------FEKGHA 280 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 G + P+ G+++MDM + D+L+ + GD+ F D L + +G + Y+LL Sbjct: 281 RKDGVICPLAGRVSMDMITVALPDALTAQEGDW---FSVDFDLPSASQQTGLSQYELLTG 337 Query: 361 IGTRY 365 +G RY Sbjct: 338 LGHRY 342 >gi|323486703|ref|ZP_08092024.1| alanine racemase [Clostridium symbiosum WAL-14163] gi|323400084|gb|EGA92461.1| alanine racemase [Clostridium symbiosum WAL-14163] Length = 375 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 146/377 (38%), Gaps = 28/377 (7%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPAL-YNAGVQDFFVTSVE 66 + IDL +K+N + + V+K NA G G + + L G++ V V Sbjct: 9 ITIDLAKIKSNMEKIRNHVGPDVEIMPVLKANACGHGLIRTSDWLVKECGIKRLAVAQVR 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E +LR QA I VL G+ NLI + S L G + Sbjct: 69 EAEQLRRAGSQAEIMVLGGVPVNNLPYAVQENLILPVFRTQDAALLSALAQENGRTARVH 128 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG R+G+ ++ + K ++ + +H A+ +Q+ RF Sbjct: 129 IKIDTGLGRIGVEKGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTKIQISRFEE 188 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVT 237 + + ++ + H+ + R G+ G +++ ++TV+ Sbjct: 189 ALGQIRARGIQPRYIHATNTPSTVRFKKAHYNMIRTGLLWLGYDPCLDEDNRLGLETVLE 248 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + + L+G + Y RD+++ +A GY DGY L G Sbjct: 249 WKTFLTNKKYVLSGRSMGYWRSFTAKRDTVVGIACFGYGDGYLEDLG----------KKG 298 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G I G PI+ + MD T DITD E+GD + + G D I D+ + Sbjct: 299 GYVLIHGKRAPII-SVCMDQTFLDITDIPEAEIGDTVTLIGHDGGEKIDAFDMEKLTE-N 356 Query: 354 NYDL-LVRIGTRYAKFY 369 +Y + L I R + Y Sbjct: 357 SYVVYLCNISERPVRIY 373 >gi|284042496|ref|YP_003392836.1| alanine racemase [Conexibacter woesei DSM 14684] gi|283946717|gb|ADB49461.1| alanine racemase [Conexibacter woesei DSM 14684] Length = 368 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 152/378 (40%), Gaps = 25/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R +DL A++ N + + + AVVK + YG G +A A G + V Sbjct: 2 SRRARAHVDLGAVERNARRLRGCAAADVLLCAVVKADGYGHGAVAVARAALAGGARWLAV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + +E V LR P+ I VL + V + + L G Sbjct: 62 ATADEAVALRRELPEPPILVLGALDEPDLARALGVGADVVAWTPEFVRCAEALAGNG-GA 120 Query: 123 PYALQVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 ++VDTG R S +EAL +L +++H A AD + QL Sbjct: 121 RLHVKVDTGMGRLGARSREEALALAELIDRVAGVRLCGVMTHFATADA-GDAHFAAQLAS 179 Query: 182 FRTLI----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTV 235 F + + + G+ A+S+ +L P HF + R G++LYG + ++ Sbjct: 180 FSAIAGVVRARHPGVLVHAANSAAVLRAPAAHFDMVRCGVALYGLDPFQRDPAAARLEPA 239 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + + + + GE V YG + + + + +A IGYADG T G Sbjct: 240 LELRSYVARVARVEPGEAVGYGARFRPSAPTWVATVPIGYADGVRRTTGG---------- 289 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 G I G P+ G ++MD D + GD + + G I +++A G Sbjct: 290 -GVDVLIGGRRRPLAGTVSMDSLGVDAGSHGDVRAGDEVVLIGARGRERILAEELAARHG 348 Query: 352 TTNYDLLVRIGTRYAKFY 369 T NY++L +G+R + Y Sbjct: 349 TINYEVLCALGSRVERVY 366 >gi|317402544|gb|EFV83110.1| alanine racemase [Achromobacter xylosoxidans C54] Length = 386 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 75/373 (20%), Positives = 148/373 (39%), Gaps = 26/373 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA---RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 L ++D +A+ +N + A ++ R A VK +AYG G ++ PAL + Sbjct: 21 RPLHARVDASAVAHNLVRLRAALPDSDAPRLWATVKADAYGHGLARVLPALRD--ADGLA 78 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V ++E R + V G++ + ++ DT + ++ + + Sbjct: 79 VLHLDEARACRQLGWNGPVLVYGGLYSPADTLLLDTPDLHLVITHAAQLQWLAQSPARER 138 Query: 122 HPYALQVDTGFNRLGLSLQE---ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+ + G + A + + L ++H A AD+ Sbjct: 139 PAIWLRFAGDIHHTGFCADDYRAAFEQARKLAARGLVSEIGHLNHYARADEADG--VGQA 196 Query: 179 LERFRTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINKS---HPMQT 234 FR ++ G ++ S++ + G Q RPG++LYG + ++S ++ Sbjct: 197 DACFREVVRGLPGPVSTSNSAAVLGHAGLAAGTQWVRPGLALYGASPFADRSAAQLALRP 256 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ++ ++++ I++ AG V Y G + + GYADGYP Sbjct: 257 AMSLHSQVVGIQRVRAGAGVGYSGAFVAPATMDVGIVTCGYADGYPRHA----------- 305 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTT 353 G + G +LG+++MDM D+ +G + ++G +++VA+A+GT Sbjct: 306 PTGTPVMVAGVRTRLLGRVSMDMMAVDLDPIPQAAIGSPVTLWGADGPPVEEVAMAAGTI 365 Query: 354 NYDLLVRIGTRYA 366 LL + R Sbjct: 366 AAQLLTGLSARVP 378 >gi|18460981|gb|AAK53980.1| VanTc-2 [Enterococcus casseliflavus] Length = 706 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 38/381 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + + AL +N + L + AVVK +AYG + +A L AGV Sbjct: 343 LHLQRAAK-EFSAPALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVAGTLERAGVDF 401 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V ++EE ++LR ++R+ +L K + +LI I S + Sbjct: 402 FAVATLEEAIELRRAGIKSRLLILGYTSAQHAKEMKHYSLIQTIVSEAHGHALA---QTS 458 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NS 176 + L VDTG +RLG++ L+ + +++ I SHL +D + Sbjct: 459 IPIECHLAVDTGMHRLGVAPD--LEAVTGLYALPSLKITRIFSHLGSSDQLDTASILRTQ 516 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q+ F L++ L SS GIL P H+ RPGI L G N+ Sbjct: 517 AQITCFDDLLAGLSARNIVYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTK 576 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q ++T +A ++ + AGE + YG R + I + +IGY DG P LS Sbjct: 577 QKINVQPILTLKALLVDKKTVAAGEAIGYGLGTIFDRPATIGIVSIGYCDGVPRALSNQG 636 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV- 346 + S +G ++P +G + MDM + D+TD + V +++ D Sbjct: 637 FQLS----------YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVIS------DWT 680 Query: 347 --ALASGTTNYDLLVRIGTRY 365 A + T +L+ R+G+R Sbjct: 681 TTADQAQTITNELISRLGSRI 701 >gi|56552488|ref|YP_163327.1| alanine racemase [Zymomonas mobilis subsp. mobilis ZM4] gi|260753846|ref|YP_003226739.1| alanine racemase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544062|gb|AAV90216.1| alanine racemase [Zymomonas mobilis subsp. mobilis ZM4] gi|258553209|gb|ACV76155.1| alanine racemase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 349 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 183/365 (50%), Gaps = 23/365 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + LRL++D +AL NW S+N ++ A +K N YGLG E++ L AG +DF Sbjct: 1 MQISSPLRLELDKSALMANWQSLNRITAG-HCGAAIKANGYGLGAERVRHYLAQAGCRDF 59 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FV+S +E L + VL+G+ ++++ PV+ S ++ + Sbjct: 60 FVSSWDEARLLDSSEKDFSLSVLHGLREDDLGYALNSSVKPVLCSP---AMIARWKAHAP 116 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + P + VDTG NRLGLS++EA + I+SHLACAD+ +N QLE Sbjct: 117 NRPCDVMVDTGMNRLGLSMEEAGSGL-----LDGLSIDNILSHLACADEADHPLNQKQLE 171 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RFR L + + SLA+S+GI L +YHF L RPG++LYGG ++ VV A Sbjct: 172 RFRILAARKQAKRYSLANSAGIFLSKDYHFDLARPGLALYGGLPVPQSKDILKPVVAIAA 231 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + I +R+ AGE + YG + +A+ +GYADGY F G Sbjct: 232 QAIQVREVSAGEAIGYGACFVTPKKMRVAILHVGYADGYWRAF-----------FEKGHA 280 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 G + P+ G+++MDM + D L+ GD+ F D L + +G + Y+LL Sbjct: 281 RKDGVICPLAGRVSMDMITVALPDVLTAHEGDW---FSVDFDLPSASQQTGLSQYELLTG 337 Query: 361 IGTRY 365 +G RY Sbjct: 338 LGHRY 342 >gi|307292839|ref|ZP_07572685.1| alanine racemase [Sphingobium chlorophenolicum L-1] gi|306880905|gb|EFN12121.1| alanine racemase [Sphingobium chlorophenolicum L-1] Length = 348 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 179/364 (49%), Gaps = 25/364 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 LRL+++ AL +NW + G A +K + YGLG ++ L +AG +DFFV++ Sbjct: 7 PLRLRMEEGALLSNWRWLKRQGGGVACGAAIKADGYGLGAAEVMRRLLDAGCRDFFVSNW 66 Query: 66 EEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E L T + + VL+G + + PV+ + Q+ + P Sbjct: 67 AEAAVLESLVTEEVSLSVLHGAREEDMALALTSRARPVLCTEWQIARWK----QAGGGPC 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VDTG NRLG +++ ++SHLA AD+ + QLERF Sbjct: 123 DVMVDTGMNRLG-----LDWRGDVPARVAGLEVATLLSHLASADE-DGPLTPTQLERFSA 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 L K SLA+S+GI +G +Y F +TRPGI+LYGG + + ++ VV E +++ Sbjct: 177 LQGQVKAARYSLANSAGICMGSDYAFDMTRPGIALYGGVPRREAAGNIRQVVFPETQVLQ 236 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R+ AG+ + Y + +D IAV +GYADGY SG S + G Sbjct: 237 RRRVRAGDTIGYNATYRAAKDMEIAVLNLGYADGYLRGFSGRGSMSA-----------GG 285 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P++G+I+MD+T D+ I GD++++ D KL D A SG + Y+LL +G R Sbjct: 286 RHLPVVGRISMDLTAIDVGGLPDISEGDWLEV---DYKLADAAAVSGLSQYELLTGLGGR 342 Query: 365 YAKF 368 + + Sbjct: 343 FDRV 346 >gi|224283464|ref|ZP_03646786.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171] gi|311064700|ref|YP_003971425.1| alanine racemase [Bifidobacterium bifidum PRL2010] gi|313140617|ref|ZP_07802810.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171] gi|310867019|gb|ADP36388.1| Alr Alanine racemase [Bifidobacterium bifidum PRL2010] gi|313133127|gb|EFR50744.1| alanine racemase [Bifidobacterium bifidum NCIMB 41171] Length = 452 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 157/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL L++N + + G VVK +AYG G A A G Sbjct: 24 RRRYPAQAIVDLATLRDNMAHLVDVVGGPHSGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G+ +++I + I V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGMDVPFDELIDNDIDISVGSLAGIDALA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G ++VD+GF R G + AL ++ + + SHLA AD Sbjct: 144 DAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWSHLAVADS 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F + LA+++ L P H +LTRPGI LY Sbjct: 204 PDVPEFVASTDRQIESFTEFTRRMEAAGIAPEIRHLANTAATLNRPEIHLELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P +T +A++ ++ AG VSYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPRDWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D + + V GG + ++ + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMQGAKHVEKAGGPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431 >gi|325282969|ref|YP_004255510.1| Alanine racemase [Deinococcus proteolyticus MRP] gi|324314778|gb|ADY25893.1| Alanine racemase [Deinococcus proteolyticus MRP] Length = 370 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 33/374 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-ALYNAGVQDFFVTS 64 R I AL+ N ++ +G + K NAYG G E +AP A + V V + Sbjct: 16 RARALISARALRGNLKFLSGKAGVPLLWPM-KANAYGHGVEAVAPVAAESEAVWGMAVAT 74 Query: 65 VEEGVKL--RLYTPQARIFV--LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 E ++L L+ V P + + + +S+ Y++ + Sbjct: 75 PAEALELSSVLHGLNCPKPVVLFGASFPDEWPALVAAGVQLTVST------YAEAAALPS 128 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+V+TG NRLG S EA ++ GQL+ + SH + A++ ++ Q Sbjct: 129 GARAHLKVNTGMNRLGASPAEA--VAVGRRLQERGQLAGVFSHFSEAEEADQTLSRQQFR 186 Query: 181 RFRTLISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 F+ + H+ + +SS +L LGP L RPG+S YG + +T + Sbjct: 187 TFQEVARHFPEALHHMGNSSAVLNLGPLPGMDLARPGLSSYGVMPSPGTPE-LTPAMTLQ 245 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 ARI + A AGE VSY G L RD+LIA IGYADGYP +G + Sbjct: 246 ARITYLHTAAAGERVSYNGLTTLQRDTLIATLPIGYADGYPRRATGQ-----------AE 294 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTN 354 + G P+LG++ MD M D T + GD++ ++G D + + +VA S Sbjct: 295 VLLAGERRPVLGRVCMDQLMVDATGL-DVSTGDWVTLWGQDAGGRELHVSEVAQWSEMAE 353 Query: 355 YDLLVRIGTRYAKF 368 Y++L R+ R + Sbjct: 354 YEILTRLSVRVERV 367 >gi|257877592|ref|ZP_05657245.1| serine/alanine racemase [Enterococcus casseliflavus EC20] gi|257811758|gb|EEV40578.1| serine/alanine racemase [Enterococcus casseliflavus EC20] Length = 700 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 159/367 (43%), Gaps = 37/367 (10%) Query: 15 ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73 AL +N + L + AVVK +AYG + +A L AGV F V ++EE ++LR Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409 Query: 74 YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133 ++R+ +L + K + +LI I S + + L VDTG + Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHGHALA---QTSIPIECHLAVDTGMH 466 Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190 RLG++ L+ + +++ I SHL +D + Q+ F L++ Sbjct: 467 RLGVAPD--LETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524 Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEAR 241 L SS GIL P H+ RPGI L G N+ +Q ++T +A Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ + AGE + YG R + I + +IGY DG P LS + S Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGIPRALSNQGFQLS---------- 634 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTTNYDLL 358 +G ++P +G + MDM + D+TD + V +++ D A + T +L+ Sbjct: 635 YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVIS------DWTTTADQAQTITNELI 688 Query: 359 VRIGTRY 365 R+G+R Sbjct: 689 SRLGSRI 695 >gi|288919620|ref|ZP_06413949.1| alanine racemase [Frankia sp. EUN1f] gi|288349018|gb|EFC83266.1| alanine racemase [Frankia sp. EUN1f] Length = 393 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 143/385 (37%), Gaps = 37/385 (9%) Query: 7 LRLKIDLTALKNNWHSMNAL------SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +D+ A+ N +++A+ G AVVK + YG G +A A G F Sbjct: 14 PTLTLDVAAVTANVRTISAIRRQAGACGAGEVMAVVKADGYGHGLADVARAALAGGATRF 73 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 VTSV E LR + + +VP + Sbjct: 74 GVTSVAEAYTLRDLGFTEPVLSWLNPVDADFTQATRAGVEL---AVPSHAHLRAVARQTP 130 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTH---NSFNKKLGQLSLIISHLACADDPSSHVNSV 177 LQ+DTG R G ++ H + + ++ HLACA +P N Sbjct: 131 GAGVHLQLDTGMARDGAPPEQWESLCHTARCAERAGFVHVVGVMGHLACAAEPGHPANRR 190 Query: 178 QLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 E F + + + + LA+++ L P H L+R G L G + + Sbjct: 191 GRECFDWGVRVALGAGLRPRDRHLAATAATLSDPRTHHSLSRIGAGLVGIDESGSVRLRP 250 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 +T A ++ +R AG V YG R + + + +GYADG P + Sbjct: 251 ALRLT--APLVTVRAVPAGTAVGYGHTWTSPRATRLGLVPVGYADGLPRCAAARAQVQVA 308 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL---SIEVGDYIQIFGP----DIKLDD 345 G ++G+++MDMT+ D+ GD + +FGP + D Sbjct: 309 -----------GVRRRVVGRLSMDMTVVDLGPDPAACPARAGDVVTLFGPGDGGEPTAAD 357 Query: 346 VALASGTTNYDLLVRIGTRYAKFYT 370 A + T ++++ +G R + T Sbjct: 358 WARWAATLEHEIVTGLGPRLRRVVT 382 >gi|257873842|ref|ZP_05653495.1| serine/alanine racemase [Enterococcus casseliflavus EC10] gi|257808006|gb|EEV36828.1| serine/alanine racemase [Enterococcus casseliflavus EC10] Length = 700 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 163/381 (42%), Gaps = 38/381 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + + AL +N + L + AVVK +AYG + +A L AGV Sbjct: 337 LHLQRAAK-EFSAPALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDF 395 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V ++EE ++LR ++R+ +L + K + +LI I S + Sbjct: 396 FAVATLEEAIELRRAGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHGHALA---QTS 452 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NS 176 + L VDTG +RLG++ L+ + +++ I SHL +D + Sbjct: 453 IPIECHLAVDTGMHRLGVAPD--LETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQ 510 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q+ F L++ L SS GIL P H+ RPGI L G N+ Sbjct: 511 AQITCFDDLLAGLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTK 570 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q ++T +A ++ + AGE + YG R + I + +IGY DG P LS Sbjct: 571 QKINVQPILTLKALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQG 630 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV- 346 + S +G ++P +G + MDM + D+TD + V +++ D Sbjct: 631 FQLS----------YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVIS------DWT 674 Query: 347 --ALASGTTNYDLLVRIGTRY 365 A + T +L+ R+G+R Sbjct: 675 TTADQAQTITNELISRLGSRI 695 >gi|257867513|ref|ZP_05647166.1| serine/alanine racemase [Enterococcus casseliflavus EC30] gi|257801569|gb|EEV30499.1| serine/alanine racemase [Enterococcus casseliflavus EC30] Length = 700 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 163/381 (42%), Gaps = 38/381 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 +H + + AL +N + L + AVVK +AYG + +A L AGV Sbjct: 337 LHLQRAAK-EFSAPALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDF 395 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F V ++EE ++LR ++R+ +L + K + +LI I S + Sbjct: 396 FAVATLEEAIELRRAGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHGHALA---QTS 452 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NS 176 + L VDTG +RLG++ L+ + +++ I SHL +D + Sbjct: 453 IPIECHLAVDTGMHRLGVAPD--LETVTGLYALPSLKITGIFSHLGSSDQLDTASILRTQ 510 Query: 177 VQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-- 229 Q+ F L++ L SS GIL P H+ RPGI L G N+ Sbjct: 511 AQITCFDDLLAGLSARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTK 570 Query: 230 --HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q ++T +A ++ + AGE + YG R + I + +IGY DG P LS Sbjct: 571 QKINVQPILTLKALLVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQG 630 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV- 346 + S +G ++P +G + MDM + D+TD + V +++ D Sbjct: 631 FQLS----------YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVIS------DWT 674 Query: 347 --ALASGTTNYDLLVRIGTRY 365 A + T +L+ R+G+R Sbjct: 675 TTADQAQTITNELISRLGSRI 695 >gi|94496351|ref|ZP_01302928.1| alanine racemase [Sphingomonas sp. SKA58] gi|94424097|gb|EAT09121.1| alanine racemase [Sphingomonas sp. SKA58] Length = 348 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 180/369 (48%), Gaps = 26/369 (7%) Query: 1 MHS-NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 MH LRL++D AL +NW + +SG A A +K N YGLG E++ L AG +D Sbjct: 1 MHGYIAPLRLRLDGDALVSNWRWLARMSGPAACGAAIKANGYGLGAEEVMRRLTRAGCRD 60 Query: 60 FFVTSVEEGVKLRLYTPQARIF-VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 FFV++ E + L VL+G+ I + PV+ + Q+ + Sbjct: 61 FFVSNWGEALALEPLMADGVRLSVLHGVRDEDMAIAVASRAKPVLCAPAQVARWRD---- 116 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + +DTG NRLGL + + ++SHLA AD+ +N+VQ Sbjct: 117 AGQKSCDVMMDTGMNRLGLDWRGDAAGM-----LAGLTIETVMSHLASADEEV-ALNAVQ 170 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 +RF + SLA+S+GI L +Y F LTRPGI+LYGG + ++ VV Sbjct: 171 RDRFVQIALGVPAERYSLANSAGICLNADYRFDLTRPGIALYGGVPHAKAAGHIRQVVQP 230 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +A+I+ R+ +AG+ + Y RD +A+ +GYADGY SG G Sbjct: 231 QAQILQRRRLIAGDSIGYNATFTAERDHEVAILNLGYADGYLRGFSGT-----------G 279 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +P+LG+++MD+ D++ + GD++ I D L + ASG + Y+LL Sbjct: 280 AASVAGVRLPVLGRVSMDLAAIDVSAVPGLSEGDWVDI---DYDLPRASAASGLSQYELL 336 Query: 359 VRIGTRYAK 367 +G RY + Sbjct: 337 TGLGARYDR 345 >gi|219670838|ref|YP_002461273.1| alanine racemase [Desulfitobacterium hafniense DCB-2] gi|219541098|gb|ACL22837.1| alanine racemase [Desulfitobacterium hafniense DCB-2] Length = 394 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 24/353 (6%) Query: 7 LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 + I+L A+ NN+ + LS AR AVVK +AYGLG +A L G F VT+V Sbjct: 4 AWIDINLDAIANNYREVTQQLSPAARVMAVVKADAYGLGAVPVAQTLQKLGCPAFAVTTV 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 EEG+ LR + + I VL + Q +L +S L + + + G+ Sbjct: 64 EEGLILRQHGVEGIILVLGPVSAEQMAEALTGDLQLTLSDFHMLREWETVAAGLGIEAKV 123 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG R G +E + + +HLA A Q+E F+ Sbjct: 124 HLKLETGMGRTGFFEKEWGELAAQLKKSPHITPVGVYTHLARAAQRDRAYTRQQVESFQR 183 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVVT 237 ++ + G+ + +S+ L P++H+ R G L G +Q Sbjct: 184 GVNLLEEQGFAGLWKHVCNSAAFLDYPDWHYDFIRTGTLLIGHIPAPAFAGKLKLQDPWV 243 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEH 290 A+ARI+ +R+ G V Y + ++ +AV +GYADG+ P + Sbjct: 244 AKARIVSLRRVPIGTFVGYQSIYRTKAETQLAVIPVGYADGFGVQPHFVPQGVWDFIKIV 303 Query: 291 SPSVFLGGKGFIK-------GYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 + + +I G+ VP+ GKI M +T+ D+ + E GD + + Sbjct: 304 IKNFLALCRIYIGQESVILQGHRVPVAGKIGMQLTVLDVGNLP-CETGDEVIL 355 >gi|89897688|ref|YP_521175.1| hypothetical protein DSY4942 [Desulfitobacterium hafniense Y51] gi|89337136|dbj|BAE86731.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 394 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 152/353 (43%), Gaps = 24/353 (6%) Query: 7 LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 + I+L A+ NN+ + LS AR AVVK +AYGLG +A L G F VT+V Sbjct: 4 AWIDINLDAIANNYREVTQQLSPAARVMAVVKADAYGLGAVPVAQTLQKLGCPAFAVTTV 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 EEG+ LR + + I VL + Q ++L +S L + + + G+ Sbjct: 64 EEGLMLRQHGVEGIILVLGPVSAEQMAEALASDLQLTLSDFHMLREWETVAAGLGMEAKV 123 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG R G +E + + +HLA A Q+E F+ Sbjct: 124 HLKLETGMGRTGFFEKEWGELAAQLKQSPHITPVGVYTHLARAAQRDRAYTRQQVESFQR 183 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK--SHPMQTVVT 237 ++ + G+ + +S+ L P++H+ R G L G +Q Sbjct: 184 GVNLLEEQGFAGLWKHVCNSAAFLDYPDWHYDFIRTGTLLIGHFPAPAFAGKLTLQDPWV 243 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEH 290 A+ARI+ +R+ G V Y + ++ +AV +GYADG+ P + Sbjct: 244 AKARIVSLRRVPKGTFVGYQSIYRTKAETQLAVIPVGYADGFGVQPHFVPQGVWDFIKIV 303 Query: 291 SPSVFLGGKGFIK-------GYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 + + +I G+ VP+ GKI M +T+ D+ + S E GD + + Sbjct: 304 IKNFLALCRIYIGQETVILQGHRVPVAGKIGMQLTVLDVGNL-SCETGDEVIL 355 >gi|153820397|ref|ZP_01973064.1| alanine racemase [Vibrio cholerae NCTC 8457] gi|126509060|gb|EAZ71654.1| alanine racemase [Vibrio cholerae NCTC 8457] Length = 307 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 143/316 (45%), Gaps = 20/316 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+ + I+L AL++N + + ++ AVVK N YG G IA G F Sbjct: 1 MNYMKAATAYINLEALQHNLQRVKQQAPESKIMAVVKANGYGHGLRHIARHAL--GADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V +EE ++LR I +L G + PG ++ N+ V+ QL Sbjct: 59 GVARIEEALQLRASGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLQALE-QAQLE 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD+G +RLG+ ++ DF + + + +SH CAD+ Q Sbjct: 118 TPVMVWLKVDSGMHRLGVRPEQYQDFVARLHQCENVAKPLRYMSHFGCADELDKSTTVEQ 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTV 235 E F +L +G E SLA+S+G+L P + RPGI +YG + + KS Q V Sbjct: 178 TELFLSLTQGCQG-ERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFVEKSAVQLGYQPV 236 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 +T ++ +I +R+ AGE V YGG RD+ I V AIGY DGYP T Sbjct: 237 MTLKSHLIAVREVKAGESVGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPN---------- 286 Query: 296 LGGKGFIKGYMVPILG 311 G + G +LG Sbjct: 287 -GTPVVVNGRRCRLLG 301 >gi|28189428|dbj|BAC56127.1| alanine racemase [Bifidobacterium bifidum] Length = 452 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 158/408 (38%), Gaps = 40/408 (9%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL L++N + + G VVK +AYG G A A G Sbjct: 24 RRRYPAQAIVDLATLRDNMAHLVDVVGGPHSGTAVMGVVKADAYGHGLLPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTPQARI-----FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G+ +++I + I V S Sbjct: 84 TWLGTAQSHEALLLRKLGIGPDRCRILTWVYNGMDVPFDELIDNDIDISVGSLAGIDALA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G ++VD+GF R G + AL ++ + + SHLA A+ Sbjct: 144 DAARRLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVPLAHEGVLHIVGQWSHLAVAEL 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F + LA+++ L HF++TRPGI LY Sbjct: 204 PDVPEFVASTDRQIELFTEFTRCMEAAGIAPEISHLANTAATLNRSEIHFEMTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 G P + +T +A++ ++ AG VSYG ++ A+ +GYA Sbjct: 264 GYEPDPAMGTPREWHLKPAMTLQAQLGTVKDVEAGHGVSYGRTYLTPDNTSTAIVPLGYA 323 Query: 277 DGYPLTLSGLDSEHSPSV-FLGGKGFI----KGYMVPILGKITMDMTMFDITDS---LSI 328 DG + SG D + + V GG + ++ + G++ MD + D+ S L + Sbjct: 324 DGIHRSASGFDMQGAKHVEKAGGPVRVMTSAGPRLLHVCGRVCMDQFIVDLHGSAAELGV 383 Query: 329 EVGDYIQIFGP-------DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 GD +++FGP + DD A A+ T +Y++ + R + Y Sbjct: 384 HEGDTVELFGPGRGEQYGEPTADDWARAADTISYEVFTCLRNRIPRLY 431 >gi|282934109|ref|ZP_06339388.1| alanine racemase [Lactobacillus jensenii 208-1] gi|281301856|gb|EFA94121.1| alanine racemase [Lactobacillus jensenii 208-1] Length = 337 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 136/349 (38%), Gaps = 31/349 (8%) Query: 37 KDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96 K NAYG G K+A G + F V ++E +LR + I VL G+ P E I Sbjct: 2 KANAYGHGAVKVAKMAARNGAEGFCVAVLDEAFELRDSSIVDPILVL-GVTPANEACIAA 60 Query: 97 TNLIPVISSVPQLTFYSKLMSCGVS--HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154 + I + + + + L +D+G R+G S + + Sbjct: 61 AHNISLTAPSLEWLEAADKALAKKDMVLKIHLAIDSGMGRIGFSEDQEFIAANEFLRNST 120 Query: 155 GQLSL-IISHLACADDPSSHVNSVQLERFRT--LISHYKGIEASLASSSGILLGPNYHFQ 211 + + +H A AD SH Q++RF I K +A+++ + N H Sbjct: 121 HFIVEGMFTHFASADSRDSHYFDYQVKRFNHLKNILSIKPKWIHVANTASSIFDKNIHSD 180 Query: 212 LTRPGISLYGGTDKINKSHPM-------QTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 + R GI LYG N + P + ++ + + ++K +G + YG Sbjct: 181 IVRFGIGLYGLNPSSNPASPDLESEINLKPALSLVSELSFVKKVHSGYGIGYGSTYVADS 240 Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324 D I +GYADG LSG K + + PI+G+I MD M + + Sbjct: 241 DQWIGTVPVGYADGVIRKLSGF------------KIKVGAHYCPIVGRICMDQLMVLLPE 288 Query: 325 SLSIEVGDYIQIFGPDIK----LDDVALASGTTNYDLLVRIGTRYAKFY 369 + + G + I+ + + + A T +Y+L + R + Y Sbjct: 289 KMPV--GTKVVIYSNNPEDPNFIKKAADYVDTIHYELACLLSDRLPRIY 335 >gi|18476140|gb|AAK58491.1| serine racemase VanTc3 [Enterococcus casseliflavus] Length = 700 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 159/367 (43%), Gaps = 37/367 (10%) Query: 15 ALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73 AL +N + L + AVVK +AYG + +A L AGV F V ++EE ++LR Sbjct: 350 ALLHNLQEIKRLIPATTKVMAVVKADAYGCDAKTVASTLERAGVDFFAVATLEEAIELRR 409 Query: 74 YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN 133 ++R+ +L + K + +LI I S + + L VDTG + Sbjct: 410 AGIKSRLLILGYTSAQRAKELKHYSLIQTIVSEAHGHALA---QTSIPIECHLAVDTGMH 466 Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV---NSVQLERFRTLISHYK 190 RLG++ L+ + +++ I SHL +D + Q+ F L++ Sbjct: 467 RLGVAPD--LETVTGLYALPSLKITRIFSHLGSSDQLDTASILRTQAQITCFDDLLAGLS 524 Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS----HPMQTVVTAEAR 241 L SS GIL P H+ RPGI L G N+ +Q ++T +A Sbjct: 525 ARNIAYGLTHLQSSYGILNYPEKHYDYVRPGILLTGSLSVPNEPTKQKINVQPILTLKAL 584 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ + AGE + YG R + I + +IGY DG P LS + S Sbjct: 585 LVDKKTVAAGEAIGYGLGTVFDRPATIGIVSIGYCDGVPRALSNQGFQLS---------- 634 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV---ALASGTTNYDLL 358 +G ++P +G + MDM + D+TD + V +++ D A + T +L+ Sbjct: 635 YQGALLPQIGLVCMDMLLIDLTDYPELAVESSLEVIS------DWTTTAYQAQTITNELI 688 Query: 359 VRIGTRY 365 R+G+R Sbjct: 689 SRLGSRI 695 >gi|307701631|ref|ZP_07638647.1| alanine racemase [Mobiluncus mulieris FB024-16] gi|307613134|gb|EFN92387.1| alanine racemase [Mobiluncus mulieris FB024-16] Length = 457 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 173/450 (38%), Gaps = 97/450 (21%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +R +DL A + N M + ++ A+VK +AYG G E+++ A AG Q V V Sbjct: 11 PVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKV 70 Query: 66 EEGVKLRLYTPQ----------------------------------ARIFVLYGIHPGQE 91 E +LR + + RIF Sbjct: 71 AEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPSTDL 130 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 K + +S++ QL S G+ L+VDTG R G +L E + + Sbjct: 131 KSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLAR 190 Query: 151 NKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRTL-----ISHYKGIEASLASS 199 ++ L ++S I SH A +D+PS+ QL F +S + +A++ Sbjct: 191 ARERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVSGLQPKLRHMAAT 250 Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVS 255 IL P HF L R GIS YG + ++ ++ V+ E + ++K AG VS Sbjct: 251 GAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVS 310 Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315 YGG+ + +A+ IGYADG+ L G K ++ G++ P++G+I M Sbjct: 311 YGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPM 359 Query: 316 DMTMFDITDS---------LSIEVGDYIQIFGPDIKL------------DDVALASG--- 351 D + ++ + ++ GD IFG +L VA Sbjct: 360 DQIILNLGSAIDGAGDLIPPPLKPGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNHDP 419 Query: 352 ------------TTNYDLLVRIGTRYAKFY 369 T +Y++L + + Y Sbjct: 420 VPSADALAAAADTISYEILTAVDKDTPRIY 449 >gi|269977008|ref|ZP_06183982.1| alanine racemase [Mobiluncus mulieris 28-1] gi|269934839|gb|EEZ91399.1| alanine racemase [Mobiluncus mulieris 28-1] Length = 457 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 173/450 (38%), Gaps = 97/450 (21%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +R +DL A + N M + ++ A+VK +AYG G E+++ A AG Q V V Sbjct: 11 PVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKV 70 Query: 66 EEGVKLRLYTPQ----------------------------------ARIFVLYGIHPGQE 91 E +LR + + RIF Sbjct: 71 AEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPSTDL 130 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 K + +S++ QL S G+ L+VDTG R G +L E + + Sbjct: 131 KSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLAR 190 Query: 151 NKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRTL-----ISHYKGIEASLASS 199 ++ L ++S I SH A +D+PS+ QL F ++ + +A++ Sbjct: 191 ARERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVNGLQPKLRHMAAT 250 Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVS 255 IL P HF L R GIS YG + ++ ++ V+ E + ++K AG VS Sbjct: 251 GAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVS 310 Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315 YGG+ + +A+ IGYADG+ L G K ++ G++ P++G+I M Sbjct: 311 YGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPM 359 Query: 316 DMTMFDITDS---------LSIEVGDYIQIFGPDIKL------------DDVALASG--- 351 D + ++ + ++ GD IFG +L VA Sbjct: 360 DQIILNLGSAIDGAGDLIPPPLKPGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNHDP 419 Query: 352 ------------TTNYDLLVRIGTRYAKFY 369 T +Y++L + + Y Sbjct: 420 VPSADALAAAADTISYEILTAVDKDTPRIY 449 >gi|227876092|ref|ZP_03994211.1| alanine racemase [Mobiluncus mulieris ATCC 35243] gi|227843391|gb|EEJ53581.1| alanine racemase [Mobiluncus mulieris ATCC 35243] Length = 457 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 103/450 (22%), Positives = 172/450 (38%), Gaps = 97/450 (21%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +R +DL A + N M + ++ A+VK +AYG G E+++ A AG Q V V Sbjct: 11 PVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKV 70 Query: 66 EEGVKLRLYTPQ----------------------------------ARIFVLYGIHPGQE 91 E +LR + + RIF Sbjct: 71 AEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTVQRPRIFAWLYTPSTDL 130 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 K + +S++ QL S G+ L+VDTG R G +L E + + Sbjct: 131 KSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLAR 190 Query: 151 NKKLG---QLSLIISHLACADDPSSH---VNSVQLERFRTL-----ISHYKGIEASLASS 199 ++ ++S I SH A +D+PS+ QL F ++ + +A++ Sbjct: 191 ARERSGLAEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVNGLQPKLRHMAAT 250 Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVS 255 IL P HF L R GIS YG + ++ ++ V+ E + ++K AG VS Sbjct: 251 GAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVS 310 Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315 YGG+ + +A+ IGYADG+ L G K ++ G++ P++G+I M Sbjct: 311 YGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPM 359 Query: 316 DMTMFDITDS---------LSIEVGDYIQIFGPDIKL------------DDVALASG--- 351 D + ++ + ++ GD IFG +L VA Sbjct: 360 DQIILNLGSAIDGAGDLIPPPLKPGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNHDP 419 Query: 352 ------------TTNYDLLVRIGTRYAKFY 369 T +Y++L + + Y Sbjct: 420 VPSADALAAAADTISYEILTAVDKDTPRIY 449 >gi|313674767|ref|YP_004052763.1| alanine racemase [Marivirga tractuosa DSM 4126] gi|312941465|gb|ADR20655.1| alanine racemase [Marivirga tractuosa DSM 4126] Length = 385 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 158/393 (40%), Gaps = 38/393 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + R+++ +ALK N + + G NA ++VVK NAYG G E P AGV Sbjct: 1 MVKHS-SRIELKQSALKANINFIKKKIGKNAILSSVVKANAYGHGIESFVPMAEKAGVHH 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSV-PQLTFYSKLMS 117 F V S E ++ + ++ GI + + N+ + + Sbjct: 60 FSVASSFEAEEVLNACHEKSEIMIMGIIYEEDIPWAIENNIEFFVYNYDRLPITLEAAKK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHV-N 175 G S ++V+TG NR G+ +E NK+ + +H A+ S+ Sbjct: 120 VGKSAKVHIEVETGANRTGMPAEEFPKAISFLKKNKEHVVFQGLCTHFGGAESLSNQFKI 179 Query: 176 SVQLERFRTLIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 Q +++ + Y+ +A S+ L P+ + L R G++ YG + Sbjct: 180 DKQKAKYKEFLKICRDKKYEPKIRHIACSAAALAMPDTVYDLVRVGVAQYGFWPSPDIYY 239 Query: 228 ---------KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 ++ + + + I+ IR G+ + YG + + IAV +GY++G Sbjct: 240 HHLQETDKKSDGALKRIFSWKTDIMDIRDVPEGDFIGYGTAFQASHKMKIAVMPLGYSNG 299 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 YP LS G I G PI+G I M++ M DIT +VGD + + G Sbjct: 300 YPRALSNR-----------GYVLIAGKKAPIVGLINMNLFMVDITHIPQAKVGDEVVLIG 348 Query: 339 PD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 I + ++ N ++L R+ + + Sbjct: 349 RQKNNVINVSSFTNSTQLLNNEMLSRLPSAIPR 381 >gi|319943626|ref|ZP_08017907.1| alanine racemase [Lautropia mirabilis ATCC 51599] gi|319742859|gb|EFV95265.1| alanine racemase [Lautropia mirabilis ATCC 51599] Length = 386 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 143/374 (38%), Gaps = 34/374 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALS----------GNARTAAVVKDNAYGLGCEKIAPALYN 54 L + +A+ +N + + R AVVK +AYG G A AL Sbjct: 17 RTLTASVSPSAMAHNLALIRRQVQENRPDGHVQADTRLWAVVKADAYGHGL---ANALTG 73 Query: 55 -AGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113 A + E LR + I +L G + + + P+ + Sbjct: 74 FAEADGMALLEFEAADWLRRHGWTKPILMLEGAFDATDVAQAAAQGLTLAIHQPRHLQW- 132 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G L+++TG NRLGL + + +L +++H A AD P Sbjct: 133 LAAHDGPPVDVYLKLNTGLNRLGLKPDDVDAYLTQVLATPGVRLRGMMTHFANADTPGGA 192 Query: 174 -----VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK 228 + + + +E +A+S+ + P + RPGI+LYG + + Sbjct: 193 LQPLATFDAVARAVQARLPAGQTLEHCVANSAALFTLPQAYRAWARPGIALYGASPFAGQ 252 Query: 229 S---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 S ++ + ++ +++ GE YGG + + + GYADGYP Sbjct: 253 SAASLGLRPAMQLTGNVLGVQQLTPGEATGYGGIFVAEQPVRVGIVNCGYADGYPR---- 308 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G + G LG+++MDM D+T G ++++G + +D+ Sbjct: 309 -------VAPTGTPVVVDGVRTRTLGRVSMDMLAVDLTPIPDAGPGTPVELWGDAVSIDE 361 Query: 346 VALASGTTNYDLLV 359 VA ++GT Y+L+ Sbjct: 362 VAESAGTLGYELMC 375 >gi|306819368|ref|ZP_07453076.1| alanine racemase [Mobiluncus mulieris ATCC 35239] gi|304647855|gb|EFM45172.1| alanine racemase [Mobiluncus mulieris ATCC 35239] Length = 457 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 173/450 (38%), Gaps = 97/450 (21%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +R +DL A + N M + ++ A+VK +AYG G E+++ A AG Q V V Sbjct: 11 PVRAVVDLAAYRANLARMRKFAPRSQQMAIVKADAYGHGMEQVSLAAIEAGAQWLGVAKV 70 Query: 66 EEGVKLRLYTPQ----------------------------------ARIFVLYGIHPGQE 91 E +LR + + RIF Sbjct: 71 AEAYRLRQFLDKSGVARDHFGDTPTSALLRSRMFQSDAAGLPTAQRPRIFAWLYTPSTDL 130 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 K + +S++ QL S G+ L+VDTG R G +L E + + Sbjct: 131 KSTIKAEIDLSVSTLDQLDQVSHAADAAGLRARIHLKVDTGLCRGGATLSEFENLCKLAR 190 Query: 151 NKK---LGQLSLIISHLACADDPSSH---VNSVQLERFRTL-----ISHYKGIEASLASS 199 ++ L ++S I SH A +D+PS+ QL F +S + +A++ Sbjct: 191 ARERSGLVEVSAIWSHFARSDEPSAEAEAFTQGQLATFNQAYDIALVSGLQPKLRHMAAT 250 Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVS 255 IL P HF L R GIS YG + ++ ++ V+ E + ++K AG VS Sbjct: 251 GAILWYPESHFNLVRVGISAYGLSPNPQIASAQNLGIRPVMRLETEVAQVKKVAAGSAVS 310 Query: 256 YGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITM 315 YGG+ + +A+ IGYADG+ L G K ++ G++ P++G+I M Sbjct: 311 YGGEWVAAEPTWLALLPIGYADGFMRRLQG-----------KAKVWVAGHLWPVVGRIPM 359 Query: 316 DMTMFDITDS---------LSIEVGDYIQIFGPDIKL------------DDVALASG--- 351 D + ++ + ++ GD IFG +L VA Sbjct: 360 DQIILNLGSAIDGAGDLIPPPLKAGDLAVIFGDPNRLPPGFPPGEPAGESTVADLWNHDP 419 Query: 352 ------------TTNYDLLVRIGTRYAKFY 369 T +Y++L + + Y Sbjct: 420 VPSADALAAAADTISYEILTAVDKDTPRIY 449 >gi|332638810|ref|ZP_08417673.1| alanine racemase [Weissella cibaria KACC 11862] Length = 371 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 139/375 (37%), Gaps = 26/375 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL I A+ +N + S + VK NAYG G ++ A G+ V Sbjct: 7 RPTRLNISQAAVTHNIQEVRQASQASFMFLAVKANAYGFGLIPMSQAAVAGGIDGLAVAL 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHP 123 ++EG+ LR +L P ++I + NLI + S+ L G Sbjct: 67 LDEGLALRQAGLTEPTLILGITLPQYARLIAENNLIATVGSLAWLEAALQYLPVNGQRLQ 126 Query: 124 YALQVDTGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L VDTG R+G + +++ + I++H A AD P QL R Sbjct: 127 VNLAVDTGMGRIGFRERTELEAAIAFMDEHREAFTYASIMTHFAEADAPEVDYFHQQLNR 186 Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVV 236 + L + S + + + R G +YG + ++ V+ Sbjct: 187 WHALTDGIEMPPLVHLANSGAAMYHADEMPTDVIRAGTVVYGVEPSRGELRSDDYLEPVL 246 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T E ++ ++K GE VSYG I +GY DG P L G Sbjct: 247 TLETELVFVKKCHEGEGVSYGHTYYAHEGEWIGTVPLGYGDGLPRKLQGF---------- 296 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 + + G PI+GK+ MD M + + +G + I G + L+DV + Sbjct: 297 --EVIVDGVKRPIVGKLAMDQMMISLP--YELPIGTTVTIIGRQGEQENTLEDVGQYTDL 352 Query: 353 TNYDLLVRIGTRYAK 367 +++ + R + Sbjct: 353 APWEISTNLQERIYR 367 >gi|15830939|ref|NP_309712.1| alanine racemase [Escherichia coli O157:H7 str. Sakai] gi|13361149|dbj|BAB35108.1| alanine racemase 2 [Escherichia coli O157:H7 str. Sakai] Length = 329 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 138/335 (41%), Gaps = 22/335 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ ++D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEMYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGYP G Sbjct: 237 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + G +G ++MDM D+T ++G + Sbjct: 286 VLVDGVRTMTVGTVSMDMLAVDLTPCPQRDIGTPV 320 >gi|91224603|ref|ZP_01259864.1| alanine racemase [Vibrio alginolyticus 12G01] gi|91190491|gb|EAS76759.1| alanine racemase [Vibrio alginolyticus 12G01] Length = 409 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I+L ++N + G + AV+K +AYG G + P + + V S Sbjct: 45 AWLEINLGQFRDNIEQFKSHMDGKTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 E +R + ++ + G+ + + D N+ +I + Q SKL G Sbjct: 105 AEAQTVRDSGFKGQLMRVRSADIGEIEAVIDLNVEELIGTAEQAKALSKLAEKAGKEIKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPS---SHVNS 176 L ++ G N + ++ + + + I++H ADD + Sbjct: 165 HLALNDGGMGRNGVDMTTEAGKKEALEIAQQAGVNIVGIMTHFPNYNADDVRQKLASFKD 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + I +A+S L P + RPG LYG + ++V Sbjct: 225 SSAWLIKEANLKRDNILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y +++SL+A +GY+DGYP + Sbjct: 282 SFKTRVASVHHLPKNSTVGYDSSYTTSKESLMANIPVGYSDGYPRKMGNT---------- 331 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + I G + G +M+ TM D+T +E G + +FG I ++ + Sbjct: 332 -AEVLINGQRAKVAGVASMNTTMVDVTGIKDVEPGSEVVLFGSQQGKTISAAEMEKHAEV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L G+ + Y Sbjct: 391 IFPELYTVWGSANPRVY 407 >gi|330829095|ref|YP_004392047.1| alanine racemase [Aeromonas veronii B565] gi|328804231|gb|AEB49430.1| Alanine racemase [Aeromonas veronii B565] Length = 408 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 77/354 (21%), Positives = 142/354 (40%), Gaps = 24/354 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + L++DL A ++N ++ G+ + A++K +AYG G + + P++ A + Sbjct: 37 QTASNAWLEVDLGAFEHNIQTLKDRLGDKGPQICAIMKADAYGHGIDLLVPSVVKANIPC 96 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 + S EE R R+ + P + + + +I S+ + + Sbjct: 97 IGIASNEEARVAREKGFTGRLMRVRAATPDEVEQALPYKMEELIGSLVSAQGIADIAQRH 156 Query: 119 GVSHPYALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + P + +++ N + L L +A K I++H + + Sbjct: 157 HTTIPVHIALNSAGMSRNGIDLRLADAKQDALAMLKLKGITPVGIMTHFPVEEKEDVKMG 216 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q + + I A+S L P+ +F + RPG LYG D I Sbjct: 217 LAQFKLDSQWLLEAGKLDRSKITIHAANSFATLAVPDAYFDMVRPGGLLYG--DSIPSHT 274 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + V+ + ++ + AG V Y L RDS +A +GY+DGY +LS Sbjct: 275 EYKRVMAFKTQVASVNHYAAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRSLSN----- 329 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 I+G VP++GK +M+ M D+TD ++ GD + +FG + Sbjct: 330 ------KAYVLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQGDAE 377 >gi|117619060|ref|YP_857116.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560467|gb|ABK37415.1| alanine racemase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 408 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 77/354 (21%), Positives = 144/354 (40%), Gaps = 24/354 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + L++DL A ++N ++ G+ + A++K +AYG G + + P++ AG+ Sbjct: 37 QTASNAWLEVDLGAFEHNIQTLKDRLGDKGPKICAIMKADAYGHGIDLLVPSVVKAGIPC 96 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 + S EE R R+ + P + + + +I S+ + + Sbjct: 97 IGIASNEEARVAREKGFTGRLMRVRAATPAEVEQALPYKMEELIGSLVSAQGIADIAQRH 156 Query: 119 GVSHPYALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + P + +++ N + L L ++ + K I++H + + Sbjct: 157 HTNIPVHIALNSAGMSRNGIDLRLADSKEDALAMLKLKGITPVGIMTHFPVEEKEDVKMG 216 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q + + I A+S L P+ +F + RPG LYG D I Sbjct: 217 LAQFKLDSQWLLEAGKLDRSKITIHAANSFATLEVPDAYFDMVRPGGLLYG--DSIPSYT 274 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + V+ + ++ + AG V Y L RDS +A +GY+DGY LS Sbjct: 275 EYKRVMAFKTQVASVNHYPAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSN----- 329 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 I+G VP++GK +M+ M D+TD ++ GD + +FG + + Sbjct: 330 ------KAYVLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQGEAE 377 >gi|311745246|ref|ZP_07719031.1| alanine racemase [Algoriphagus sp. PR1] gi|126577772|gb|EAZ81992.1| alanine racemase [Algoriphagus sp. PR1] Length = 385 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 80/393 (20%), Positives = 157/393 (39%), Gaps = 38/393 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + R+++ ++L N + + G R ++VVK NAYG G + AGV Sbjct: 1 MVRHS-SRIELSQSSLTTNINFIKKKIGKGVRISSVVKANAYGHGITEFVKMAEKAGVSH 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISS-VPQLTFYSKLMS 117 F S E ++ + ++ GI + + + + + Sbjct: 60 FATASAFEAEEVMDAKSENSEVMIMGILYDEDIDWAVENGIEFYVFNYARLPLVLKSAQK 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHV-N 175 G ++V+TG NR GL+ +E L + + + + +H A++ S+ Sbjct: 120 LGKKAKVHIEVETGANRTGLTDKEFLPTLNFLKKHSEDIIFKGLCTHFGGAENISNQFKI 179 Query: 176 SVQLERFRTLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--- 227 + Q +R++ + +A S+ L + + + R G++ YG + Sbjct: 180 NKQHDRYKNFLKKCKQKGMMPEVRHIACSAAALAYKDTVYDMVRIGVAQYGFWPSPDIYY 239 Query: 228 ---------KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 ++ + T + ++ IR GE + YG + +D +AV +GY++G Sbjct: 240 MHLQEIGKQSDGALKRIFTWKTDVMDIRDVDEGEFIGYGTSFQAVQDMKVAVMPLGYSNG 299 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 YP S G IKG VPI+G I M++ M D+T+ +E+G+ + + G Sbjct: 300 YPRAQSNR-----------GHVLIKGKKVPIVGLINMNLFMVDVTNIPGVELGEEVVLVG 348 Query: 339 PD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 I + + N ++L R+ + + Sbjct: 349 RQKNNTINISSFTQVTQLLNNEMLSRLPSAIPR 381 >gi|119717707|ref|YP_924672.1| alanine racemase [Nocardioides sp. JS614] gi|119538368|gb|ABL82985.1| alanine racemase [Nocardioides sp. JS614] Length = 380 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 144/374 (38%), Gaps = 31/374 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R IDL A+ +N + + AVVK + +G G ++A G VT+++ Sbjct: 15 PRPDIDLAAVAHNTRLLAGRATG-ELMAVVKADDFGHGAVELARTALANGATWLGVTTID 73 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR A + + + +P L + L Sbjct: 74 EALALRAAGLTAPLLSWLNPVDADLAAAVRAGVDLGVPGLPHLD----ATTAARGARVHL 129 Query: 127 QVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 VD G R G + + + Q+ ++ HL CA+DP+ N++ RF Sbjct: 130 HVDAGMARDGAAPATWGQLCRAARRAEQRGEIQVVGVMGHLGCAEDPTDECNALGRTRFA 189 Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + + + LA+++ L P H ++R G L G + ++ +T Sbjct: 190 WALETARAAGLRPAHRHLAATAATLTDPRSHHTMSRVGAGLVGIDPS--HTTRLRPALTL 247 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A ++ +R+ G V YG + + + + + +GYADG P SG Sbjct: 248 IAPVVQVRRVRGGTPVGYGHAYRTSAATHLGLVPLGYADGLPRLASGRAEVLVRGRRRPV 307 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 G I+MD + D+ + ++VG+ + +FGP + + + A S T Sbjct: 308 VGR-----------ISMDQLVVDLGERP-VDVGEGVTVFGPGDAGEPTVAEWAAWSETIE 355 Query: 355 YDLLVRIGTRYAKF 368 ++++ IG R + Sbjct: 356 HEIVTGIGARVPRR 369 >gi|15896574|ref|NP_349923.1| alanine racemase [Clostridium acetobutylicum ATCC 824] gi|20137413|sp|Q97DY9|ALR2_CLOAB RecName: Full=Alanine racemase 2 gi|15026412|gb|AAK81263.1|AE007830_4 Alanine racemase [Clostridium acetobutylicum ATCC 824] gi|325510735|gb|ADZ22371.1| Alanine racemase [Clostridium acetobutylicum EA 2018] Length = 395 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 155/379 (40%), Gaps = 34/379 (8%) Query: 8 RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + +I+L+ LK N+ + L N + AV+K +AYG G IA L N F V + Sbjct: 30 KAEINLSQLKRNFDIIQGFLKPNTKFMAVLKGDAYGHGIRPIAKELINLKCDVFGVVRLI 89 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PYA 125 E LR + I +L I P Q + N+IP++ S + + S + Sbjct: 90 EAFTLRKAGIKTPIMLLAPISPSQAAWVIRYNIIPMVDSEEIVEALDQSASQNDTIVKLH 149 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++++TG NR G++ + A+ F K L + D + Q+E F + Sbjct: 150 VKINTGLNRYGVNPENAVKFIREIHEKYLHVQVDGVYTHFQDPDYNPDFTHKQIECFNNI 209 Query: 186 I-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVT 237 I + A+S+GI+ P H+ + R G L+G + N ++T++ Sbjct: 210 IFQLQKQKLRPRIIHAANSTGIIRYPEAHYDMVRCGTLLFGLEHEQGQRNMPKGIKTLME 269 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + RI+ +R AGE YG +DS +A+ A GY DG Sbjct: 270 LKGRIMKVRTIRAGEAGGYGSTFVAKKDSKVAIIAFGYGDGISRGWK------------- 316 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPD----IKLDDVALASGT 352 + + G VP++ MD M DI++ ++ D I G I + + G Sbjct: 317 -EVLVAGKRVPVV-NYFMDGLMVDISNIDETVKELDEAVIVGNQGDESITWLEACKSLG- 373 Query: 353 TNY--DLLVRIGTRYAKFY 369 +Y + + I R K Y Sbjct: 374 -SYVDEQIQCITERVPKKY 391 >gi|332669025|ref|YP_004452033.1| alanine racemase [Cellulomonas fimi ATCC 484] gi|332338063|gb|AEE44646.1| alanine racemase [Cellulomonas fimi ATCC 484] Length = 382 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 130/373 (34%), Gaps = 30/373 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL +D A+ N + + AVVK + +G G +A G VT+V Sbjct: 17 PRLLVDPAAVAANTRLLAGRARG-DLMAVVKADGFGHGAVTVARTALAHGATSLGVTTVA 75 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + LR +A + + + ++ L Sbjct: 76 EALALRDAGLRAPVLSWLNPVDADFASAVAAGVELAVPDA---AHLRAVLDTAPGARVHL 132 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFR 183 +DTG R G + + + ++ HLACAD P N+ RF Sbjct: 133 HLDTGLARDGAEPAAWPSLCRLARSAERTGRVRVVGVMGHLACADRPRHPANAEGRSRFA 192 Query: 184 T--LISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + G+ LA+++ L P H R G L G + + ++ Sbjct: 193 WGVRTARAAGLRPSVRHLAATAATLTDPRSHHTTVRVGAGLVGIDPSG--TTRLAWAMSL 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A ++ +R+ AG V YG R + +A+ +GYADG P + G Sbjct: 251 TAPVVSVRRVRAGTPVGYGHTWTAPRATTLALLPVGYADGLPRAVPGRAEVLLRGRRRPV 310 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTN 354 G + +MD T+ D+ D + G+ + GP + +D A Sbjct: 311 VGRV-----------SMDQTVVDVGDEP-VRPGEVAVLLGPGTGGEPTPEDWADWFDVLP 358 Query: 355 YDLLVRIGTRYAK 367 +++L G R A+ Sbjct: 359 HEVLTGFGPRVAR 371 >gi|213612760|ref|ZP_03370586.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 322 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 140/337 (41%), Gaps = 22/337 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG +T++ I + A GYADGYP G Sbjct: 237 SEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTP 285 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 + G +G ++MDM D+T +G +++ Sbjct: 286 VLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVEL 322 >gi|160947043|gb|ABX54690.1| serine racemase [Enterococcus faecalis] Length = 366 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 31/363 (8%) Query: 16 LKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74 L +N + + + + AVVK NAYG+ +A L G+ F V +++E + LR Sbjct: 17 LLHNVQVIKKNIPKSTKIMAVVKANAYGINAVNVAIILEYIGIDFFAVATIDEAIALRKN 76 Query: 75 TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNR 134 + I +L P + + L ++ L G L+VDTG +R Sbjct: 77 GITSNILILGYTTPTKVDDLIHYELTQ---TIVSKEHAYFLNKTGKKIMCHLKVDTGMHR 133 Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLISHYKG 191 LG+ L+ FN ++ + SHL ADD S Q+ R+ T+I+ K Sbjct: 134 LGVEP--TLEEICPIFNYPFLKIKGVYSHLGSADDLSEEGKQRTIKQISRYNTIIAELKR 191 Query: 192 IE-----ASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPMQTVVTAEARI 242 L SS GIL + RPGI LYG + +Q VV +A++ Sbjct: 192 KRVDVGLTHLQSSYGILNYSELAYDYVRPGIILYGLLSNNDHNVKLHLDLQPVVAVKAQL 251 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +K GE + YG +LT I V +IGYADG P LS + Sbjct: 252 ISKKKIAPGEYIGYGTDTQLTSSKTIGVLSIGYADGIPRNLSNGEYC----------VVF 301 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 + +P +G+I MDM + D+++ I +G + + +++++ T +++ +G Sbjct: 302 EDKQIPQIGRICMDMMLVDLSNCSDIPLGVMVDVL---PNIEEISQIQSTITNEIISCLG 358 Query: 363 TRY 365 +R Sbjct: 359 SRL 361 >gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 829 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 174/383 (45%), Gaps = 26/383 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 S RL +DL A+++N AL AV+K AYG ++A AL ++G+ Sbjct: 455 ESMAPRRLLVDLDAIRDNITRFRALCGPEVAILAVLKAWAYGTELPRLAAALQDSGIDWI 514 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V++ +EG +R + V+ +K + + S L S G Sbjct: 515 GVSAADEGAVIRRAGVHRPVLVMLMDPDEVDKAVRWRVTPLIYSLPFAQALVRTLQSMGA 574 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 L+++TG RLG++ +EAL + + ++ +++HLA ADDP++ QL Sbjct: 575 HLEVHLEIETGMGRLGVAPEEALAAARLLRDSGVVTVTGVMTHLAGADDPAADDETRAQL 634 Query: 180 ERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI--NKSHPM 232 ERF +++ + A++SG + P + + R G+ L+G ++ + Sbjct: 635 ERFDAVMARLHQELGTPLLVHAAATSGAVRFPQSRYGMVRLGLGLFGLHPSPAVAEAIEL 694 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYADGYPLTLSGLDSEHS 291 + V +R++ +R+ G+ + Y G ++ + I + A GY DG P S Sbjct: 695 ELAVAFISRLVQVREYGRGQRIGYNGTYVVSAERQRIGIVAAGYNDGVPWRFSNR----- 749 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVA 347 G+ I+G + +LG+++MD D+ VGD + IFG ++ + A Sbjct: 750 ------GEVMIQGRRLAVLGRVSMDSMAVDLDPLPEATVGDEVLIFGAYEGQVLRPEQAA 803 Query: 348 LASGTTNYDLLVRI-GTRYAKFY 369 L +GT YDLLV++ G R + + Sbjct: 804 LQAGTIPYDLLVQVDGRRVQRIF 826 >gi|225420488|ref|ZP_03762791.1| hypothetical protein CLOSTASPAR_06833 [Clostridium asparagiforme DSM 15981] gi|225040871|gb|EEG51117.1| hypothetical protein CLOSTASPAR_06833 [Clostridium asparagiforme DSM 15981] Length = 331 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 135/319 (42%), Gaps = 26/319 (8%) Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 EEGV LR + I VL HP Q + + P + ++ Q S+L GV Sbjct: 1 EEGVILRRHGIGKMILVLGVTHPDQYGELIRYQIRPTVFTLRQAERLSELACREGVRAKL 60 Query: 125 ALQVDTGFNRLGLSLQEA-LDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L VDTG +R+G+ E + + ++ + +H A AD+ QL + Sbjct: 61 HLAVDTGMSRIGMEPDETSAEMVLSMSRLPGIEIEGMFTHFARADERDKESARAQLAAYL 120 Query: 184 TLIS--HYKGIEASLAS----SSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQT 234 +GIE L + + P+ L R GIS+YG + Sbjct: 121 NFSELLKSRGIEIPLKHCSNSAGIVEGLPSNSLDLVRAGISIYGLYPSDEVDRETVHLTP 180 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ ++RI I+ G VSYGG R + IA +GY DGYP +LS Sbjct: 181 VMELKSRISYIKTIRPGTPVSYGGTFVARRPTRIATIPVGYGDGYPRSLSSR-------- 232 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALAS 350 G I+G PILG++ MD M D+TD E D + + G I ++++A Sbjct: 233 ---GSVLIRGRRAPILGRVCMDQFMVDVTDIPEAEEEDVVTLIGRDGGDQISVEELARLG 289 Query: 351 GTTNYDLLVRIGTRYAKFY 369 G +Y+L+ +G R + Y Sbjct: 290 GGFHYELICDLGKRVPRVY 308 >gi|329890838|ref|ZP_08269181.1| alanine racemase [Brevundimonas diminuta ATCC 11568] gi|328846139|gb|EGF95703.1| alanine racemase [Brevundimonas diminuta ATCC 11568] Length = 378 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 197/367 (53%), Gaps = 17/367 (4%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R+ + L A+ N+ +M A AAVVK +AYGLG +IAPALY+AG + FFV + E Sbjct: 22 RIHVSLRAVAANYRAMCDQVAPAACAAVVKADAYGLGAARIAPALYDAGCRAFFVAHLFE 81 Query: 68 GVKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 V LR P A +FVL G+ PG E IPV++S Q+ +++L G A Sbjct: 82 AVDLRRVLPADAELFVLNGLAPGAEYAALAAGAIPVLNSREQVEGWARLGRAVGRPLAAA 141 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +Q DTG +RLGL ++A + + LI+SHLA AD P N+ Q + F + Sbjct: 142 IQFDTGMSRLGLPPEDAAWAFAPEGPIRWIEPRLILSHLAVADTPGHAGNARQRQAFERI 201 Query: 186 ISH-YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 ++H +G+ SLA+S+G LG +YH+ L R G +L+G + + MQ VV R+I Sbjct: 202 LAHAPQGVARSLANSAGCWLGQDYHYDLCRVGAALFGLDAS-SSAKAMQPVVEVTGRVIQ 260 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R AG V YG +A +GYADG+P LS +GG F +G Sbjct: 261 TRAVPAGAGVGYGWAVTAAEGMRLATIGVGYADGWPRQLS----------AVGGAAF-EG 309 Query: 305 YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 ++P +G+I+MD + D++ ++ GD++++ GP+ + +AL T +Y+++ R+G Sbjct: 310 RLLPFVGRISMDSLVVDVSALPPDALKPGDHVELLGPNRPPEQLALEGATIDYEVIARLG 369 Query: 363 TRYAKFY 369 R + Y Sbjct: 370 RRLCREY 376 >gi|149910818|ref|ZP_01899452.1| alanine racemase [Moritella sp. PE36] gi|149806152|gb|EDM66132.1| alanine racemase [Moritella sp. PE36] Length = 408 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 136/376 (36%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I+L + N + + AV+K +AYG G + P + G+ +TS Sbjct: 45 WLEINLGQFEQNIQQFKKHIKPGTKICAVMKADAYGNGIRGLMPTVIAQGIPCIAITSNA 104 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125 E +R ++ + + K + N+ +I S Q + G S Sbjct: 105 EARLVRSSGFDGQLMRVRSASIDEIKQSLELNIEELIGSESQAEQLAALYEKTGKSIKVH 164 Query: 126 LQ-VDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACAD-----DPSSHVNSV 177 + D G R G+ + A K ++ I++H D D Sbjct: 165 IALNDGGMGRNGIDMSSAAGKQEAVAIATSKGIEVVGIMTHFPNYDAEYIRDKLVGFKQH 224 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + I A+S L + RPG YG + ++V+ Sbjct: 225 SAWLMQNASLNRDDILLHAANSYTALNVKEAQLDMVRPGGVFYGDLPT---NLEYPSIVS 281 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + RI I G+ V Y + R S++A +GY+DGYP + Sbjct: 282 FKTRIASIHHLPEGQTVGYDSTYTVKRASILANLPVGYSDGYPRKMGNKS---------- 331 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ TM D+TD + G + +FG + I + ++ + Sbjct: 332 -EVIINGQRAKVVGMTSMNTTMVDVTDIQGVFPGQEVTLFGAENKERITISEMEKNADLI 390 Query: 354 NYDLLVRIGTRYAKFY 369 +L G+ +FY Sbjct: 391 FPELYTLWGSANPRFY 406 >gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis 60-3] gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis 60-3] Length = 843 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 156/376 (41%), Gaps = 25/376 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL AL NN S AL S R + K YG+G ++A AL + V Sbjct: 477 TTLEIDLEALVNNLKSYKALLSPETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALA 536 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PY 124 +EG +LR I V+ E + + + F + G+SH P Sbjct: 537 DEGKELRSKGILLPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPV 596 Query: 125 ALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLE 180 +++DTG +R G + A + L ++ I +HLA AD+ S Q Sbjct: 597 HIELDTGMHRTGFTPDRATLEHLAQTLHEVEPLIRVQSIFTHLAAADEPMMSDFTEQQFA 656 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + + + +++G+ ++H+ + R G+ LYG + + + Sbjct: 657 LYDEGADYLTSQLSYRPLRHVQNTAGMERYNHHHYDMARLGVGLYGISATGSLTLEPVAK 716 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ I+ GE + YG + ++ I + IGYADGY S Sbjct: 717 LR--TTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFSCGV-------- 766 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFG-PDIKLDDVALASGTT 353 G I + PI+G + MD M D+T + GD + IFG P +++ D+A GT Sbjct: 767 --GSVMIHDTLCPIVGNVCMDTCMVDLTALQGKVAEGDEVIIFGVPGLQVSDLAERIGTI 824 Query: 354 NYDLLVRIGTRYAKFY 369 Y+++ ++ R + Y Sbjct: 825 PYEVISKLSPRIKRTY 840 >gi|315181783|gb|ADT88696.1| alanine racemase [Vibrio furnissii NCTC 11218] Length = 409 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 140/377 (37%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I+LT ++N ++ + + AV+K NAYG G + + P + + + S Sbjct: 45 AWLEINLTQFRDNIEQFKSKMNNHTKICAVMKANAYGNGIQGLMPTILEQQIPCVAIASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124 E +R + + + G+ K N+ +I S Q + G Sbjct: 105 AEAQAVRDSGFKGELMRVRSASLGEIKDAMHLNVEELIGSAEQAKALSALAKKAGHDIKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 L ++ G N + ++ + K ++ I++H D + N+ Sbjct: 165 HLALNDGGMGRNGIDMTTDAGKKESLQIAAAKGVRIVGIMTHFPSYDADEVRQKLASFNT 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + + I +A+S L P + RPG LYG + ++V Sbjct: 225 HSAWLIKEAKLNREDILLHVANSFTALNVPEAQLDMVRPGGVLYGDQPTNPE---YPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y +DSL+A +GY+DGYP + Sbjct: 282 SFKTRVASLHHLPKNSTVGYDSTFTTQQDSLMANIPVGYSDGYPRKMGN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352 + I G ++G +M+ TM D+T ++ G + +F G I ++ + Sbjct: 331 KAQVLINGQRANVVGVASMNTTMVDVTHIKGVKAGSEVVLFGHSQGETISASEMENNADV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L G+ + Y Sbjct: 391 IFPELYTLWGSANPRVY 407 >gi|56697512|ref|YP_167880.1| alanine racemase [Ruegeria pomeroyi DSS-3] gi|56679249|gb|AAV95915.1| alanine racemase [Ruegeria pomeroyi DSS-3] Length = 377 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 26/362 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL +NW ++NA + A TAAVVK + YGLG ++A L AG + FFV + EEG Sbjct: 10 LTIDLDALADNWQALNART-TAETAAVVKADGYGLGAARVAARLARAGARTFFVAAAEEG 68 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +R P I V G G I+ L P+I+SV Q+ + + + H + +Q Sbjct: 69 AAVRKAVGPDPMIGVFSGHMEGDAGILRANRLTPMINSVDQMLRHVEQL---PGHRFGVQ 125 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG NRLGL ++ + + +L++SHLACAD+P +N QL F+ + Sbjct: 126 LDTGMNRLGLEPEDWAQLREIALRQ---NPALVMSHLACADEPGHDMNRKQLRLFKEMTD 182 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 K SLA++ GILLGP+YHF L RPG+ LYGG VVT + +I +R Sbjct: 183 GIKA-PRSLAATGGILLGPDYHFDLCRPGVGLYGGEPFDEAKA----VVTLDLPVIQVRD 237 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 GE V YG R IA A GYADG + + + Sbjct: 238 LAEGETVGYGNSWTAPRACRIATVAAGYADGLHRAMGRGITLFAGKTA-----------C 286 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 P++G+I+MD+ D++ +Q+ +DD+A A+GT Y++L +G RY + Sbjct: 287 PVVGRISMDLITVDVSGLD--HEPASLQLLNRLQTVDDLAEAAGTIGYEILTSMGRRYRR 344 Query: 368 FY 369 Y Sbjct: 345 SY 346 >gi|229823671|ref|ZP_04449740.1| hypothetical protein GCWU000282_00972 [Catonella morbi ATCC 51271] gi|229786908|gb|EEP23022.1| hypothetical protein GCWU000282_00972 [Catonella morbi ATCC 51271] Length = 387 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 151/387 (39%), Gaps = 35/387 (9%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + I+L A+++N M + AVVK NAYG G +A A AG Q V Sbjct: 7 HRPTVAIINLNAIQHNVREMKRHLEPDQALYAVVKANAYGHGAVAVAKAALAAGAQGLAV 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV- 120 +V+EG++LR A+ ++ G + P + L ++S + + Sbjct: 67 ATVDEGIELRQAGLLAQPILILGLVDPRAIAELVYYRLTVIVSDLIWFQEAWAQLVSNHQ 126 Query: 121 -------SHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 L +DTG R+G +++E F + +H + A Sbjct: 127 ESLLDDAKLKVHLALDTGMGRIGLRTVEEVQAFAEGIQVFPWVNWEGVDTHFSTAGGGDP 186 Query: 173 HVNSVQLERFRTLISHYKG---IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK- 228 Q +++ L++ + S+ G+ + R GIS+YG K + Sbjct: 187 AYVETQWAKWQELLTAVPDSVTVRHYANSAMGVWFKRQPVSSIERFGISMYGMHPKDERS 246 Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 +Q + + I+ +++ G +SYG + D +A IGYADG+ + Sbjct: 247 SLPIDLQPALQLISEIVYVKQVEKGSKISYGASYEAQEDEWVATIPIGYADGWFRHYKDI 306 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD-- 344 ++G+ P+LG I MD M + + VG + + G D L+ Sbjct: 307 ------------PVLVEGHACPVLGVINMDQLMIRLPH--QVPVGTTVTLIGQDHHLENH 352 Query: 345 --DVALASGTTNYDLLVRIGTRYAKFY 369 D+A GT +Y++ + R + Y Sbjct: 353 AADLARLVGTISYEIFCGLSDRIPRIY 379 >gi|218295810|ref|ZP_03496590.1| alanine racemase [Thermus aquaticus Y51MC23] gi|218243548|gb|EED10076.1| alanine racemase [Thermus aquaticus Y51MC23] Length = 361 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 146/371 (39%), Gaps = 33/371 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++DL AL N+ + A + V+K +AYG G IA L GV F V ++ Sbjct: 5 RAWIEVDLGALWANYLLLKARAQG-EVIPVLKADAYGHGALPIARFLEERGVGRFAVATI 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCGVSHPY 124 EG LR + + +L +HP + + L P +S+ + + G++ Sbjct: 64 AEGRALREGGVRGEVLLLGSLHPLEAEAALRWGLTPTLSTLEAARALAERAWALGLTPRA 123 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG NR+G +EAL + + +D VQ RF+ Sbjct: 124 HLKVDTGMNRVGFPWEEALAALRAVEALGVRVEGVYSHLATAGED--EAFVEVQRGRFQR 181 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +S LL + R G++LYG ++ V+ AR L Sbjct: 182 VREALGPGYFYHLENSYGLLLHG--GENARVGLALYGLVP----GFGLRPVLRLLARPTL 235 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +++ AG+ V YGG +A +GYADG P F+ G G Sbjct: 236 VKRLKAGDRVGYGGAFVAQGGEWLATLPVGYADGLPRG---------AVAFVRGP---GG 283 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQI------FGPDIKLDDVALASGTTNYDLL 358 + G+I+MD T + + + + FGP L A A GT Y++ Sbjct: 284 ERFRVAGRISMDQTTVLLPGPVDL----WAVFEVLSPDFGPT-GLLAWAEARGTIPYEVA 338 Query: 359 VRIGTRYAKFY 369 V + R + Y Sbjct: 339 VHLSRRLPRVY 349 >gi|323692158|ref|ZP_08106401.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum WAL-14673] gi|323503732|gb|EGB19551.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum WAL-14673] Length = 369 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 139/359 (38%), Gaps = 26/359 (7%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPAL-YNAGVQDFFVTSVE 66 + IDL +K+N + + V+K NA G G + + L G++ V V Sbjct: 9 ITIDLAKIKSNMEKIRNYVGPDVEIMPVLKANACGHGLIRTSDWLVKECGIKRLAVAQVR 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPYA 125 E +LR QA I VL G+ NLI + S L G + Sbjct: 69 EAEQLRRAGSQAEIMVLGGVPVNNLPYAVQENLILPVFRTQDAALLSALAQENGRTARVH 128 Query: 126 LQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +++DTG R+G+ ++ + K ++ + +H A+ +Q+ RF Sbjct: 129 IKIDTGLGRIGVEKGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTEIQISRFEE 188 Query: 185 LI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVT 237 + + ++ + H+ + R G+ G +++ ++TV+ Sbjct: 189 ALGQIRARGIQPRYIHATNTPSTVRFKKAHYNMIRTGLLWLGYDPCLDEDNRLGLETVLE 248 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + + L+G + Y RD+++ +A GY DGY L G Sbjct: 249 WKTFLTNKKYVLSGRSMGYWRSFTAKRDTVVGIACFGYGDGYLEDLG----------KKG 298 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G I G PI+ + MD T DITD E+GD + + G D I D+ + T Sbjct: 299 GYVLIHGKRAPII-SVCMDQTFLDITDIPDAEIGDTVTLIGHDGSEKIDAFDMEKLTKT 356 >gi|87199969|ref|YP_497226.1| alanine racemase [Novosphingobium aromaticivorans DSM 12444] gi|87135650|gb|ABD26392.1| alanine racemase [Novosphingobium aromaticivorans DSM 12444] Length = 356 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 173/362 (47%), Gaps = 23/362 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL+ID AL +NW +++A+SG A A VK +AYGLG +++ L AG +DFFV Sbjct: 17 LRLRIDADALASNWRALDAMSGTATAGAAVKADAYGLGAARVSRILVGAGCRDFFVAHWA 76 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E L + P A I VL+G E + + + G + Sbjct: 77 EVPNLLPHVPAASIAVLHGPMNAAEAAFARATGARPVLNSLSQARLWQETGGGR---CHV 133 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTG +RLGL++ E D + L +SHLA AD+ N Q RF T+ Sbjct: 134 MVDTGMSRLGLAMSEIADPALADLDVDLC-----LSHLASADEDV-PQNEQQRLRFETVR 187 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + SLA+S+GI LG +H +TRPGI+LYGG + + ++ V EA +I +R Sbjct: 188 AAIPARRYSLANSAGIALGAGFHADVTRPGIALYGGIARPEFAGTIRQVARPEAAVIQVR 247 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G+ V Y R + V AIGYADGY +G G G Sbjct: 248 HLQPGDKVGYNAIFTADRPMRVGVLAIGYADGYLRCWTGR-----------GSFLFDGVE 296 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 VP+LG+++MD+T+ D+ S GD++ L A SG + Y+LL +G R++ Sbjct: 297 VPVLGRVSMDLTIVDLGGVPSCNEGDWLV---ASYDLPRAARESGLSQYELLTVLGRRFS 353 Query: 367 KF 368 + Sbjct: 354 RR 355 >gi|311744950|ref|ZP_07718735.1| alanine racemase [Algoriphagus sp. PR1] gi|126577457|gb|EAZ81677.1| alanine racemase [Algoriphagus sp. PR1] Length = 384 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 157/394 (39%), Gaps = 39/394 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQD 59 M + + L+I A + N + + G + AVVK NAYG G +++ AG++ Sbjct: 1 MIATSY--LEISAKAYRQNIRYIRSEIGPSTVISAVVKGNAYGHGIQQMVEIAEKAGIRH 58 Query: 60 FFVTSVEEGVKL-RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MS 117 F S +E ++ R ++ I +L ++P + I + + +L + S Sbjct: 59 FSTFSSDEAWEVFRCSKKKSEIMILGMLYPEEMSDIIKAGINFYVYDFRRLELAVTISKS 118 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS- 176 G+ ++++TGF+R G + + + S+ Sbjct: 119 LGIQAKIHIELETGFHRTGFEWSSREKLATYLKEQMDHIQLKGLCSHYAGAESVSNFVRV 178 Query: 177 ----VQLERFRTLISH--YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-- 228 F+T + + A S+ L+ P + R GI+ YG Sbjct: 179 KNQIEVYNNFKTYFNQKGIHFEKYHTACSAATLIFPETIMDMVRIGIAGYGFWPTKETFF 238 Query: 229 ----------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 +P++ +V+ ++ ++ I+ GE V YG ++ +A+ +GYA G Sbjct: 239 AKLNSLPKANKNPLKRLVSWKSTVMSIKPVKMGEFVGYGNSFMALQNMRLAIVPVGYAHG 298 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 Y LS G+ I+G ++G +TM+ +IT+ +IEVGD + + G Sbjct: 299 YSRLLSNQ-----------GQVLIRGKFCNVVGTVTMNTIALNITNLKNIEVGDEVVLIG 347 Query: 339 ----PDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +I + + ++ NY+LL R+ + Sbjct: 348 KQGNKEITVASFSESTQQVNYELLTRLPKDIPRR 381 >gi|295698664|ref|YP_003603319.1| alanine racemase [Candidatus Riesia pediculicola USDA] gi|291156967|gb|ADD79412.1| alanine racemase [Candidatus Riesia pediculicola USDA] Length = 362 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 159/369 (43%), Gaps = 23/369 (6%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I AL N + L+ N+R A+VK NAYG G + + L + V F V+++EE K Sbjct: 6 IRKKALIYNIKKIQKLTNNSRIIAIVKSNAYGHGSKFVTRTLKDF-VDYFGVSNIEEAHK 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 + + I L G +E + + V+ + + ++++T Sbjct: 65 IVDDGIKNSIISLMGFINYEELKLASQLRLEVVVHNHEQINILEKEKIKFPIAVWMKINT 124 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV----NSVQLERFRTLI 186 G NRLG +A+ + K + + + + +QL+RF+ I Sbjct: 125 GMNRLGFLPDQAVKIYNRLKKCKNVRKPVNTISHFSSANIQEPYLFDFTQLQLDRFKKFI 184 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARII 243 G + S+ASSSGIL P+ H + R GI +YG + K ++ + + ++++I Sbjct: 185 IDKNG-KNSIASSSGILFWPSSHLRWVRAGIIMYGISPKFGRNGREFGLIPAMKLKSKLI 243 Query: 244 LIRKALAGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 +R+ G+ + YG + + I + +IGY DGY S I Sbjct: 244 SVRQFKPGQTLGYGQNWINNRKKTYIGIVSIGYGDGYHSCDS-----------KNSWVLI 292 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP-DIKLDDVALASGTTN-YDLLVR 360 G VP++G I MDM D+ + L +VGD + I+G +++ + Y + + Sbjct: 293 NGRRVPVIGSILMDMIFVDLGEHLCDKVGDEVIIWGEKKFPIEEAFKGHDVSCLYRSVSQ 352 Query: 361 IGTRYAKFY 369 + +R + Y Sbjct: 353 LTSRVKRKY 361 >gi|260769245|ref|ZP_05878178.1| alanine racemase [Vibrio furnissii CIP 102972] gi|260614583|gb|EEX39769.1| alanine racemase [Vibrio furnissii CIP 102972] Length = 409 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 140/377 (37%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I+LT ++N ++ + + AV+K NAYG G + + P + + + S Sbjct: 45 AWLEINLTQFRDNIEQFKSKMNNHTKICAVMKANAYGNGIQGLMPTILEQQIPCVAIASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124 E +R + + + G+ K N+ +I S Q + G Sbjct: 105 AEAQAVRDSGFKGELMRVRSASLGEIKDAMHLNVEELIGSAEQAKALSALAKKAGHDIKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 L ++ G N + ++ + K ++ I++H D + N+ Sbjct: 165 HLALNDGGMGRNGIDMTTDAGKKESLQIAAAKGVRIVGIMTHFPSYDADEVRQKLASFNT 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + + I +A+S L P + RPG LYG + ++V Sbjct: 225 HSAWLIKEAKLNREDILLHVANSFTALNVPEAQLDMVRPGGVLYGDQPTNPE---YPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y +DSL+A +GY+DGYP + Sbjct: 282 SFKTRVASLHHLPKNSTVGYDSTFTTQQDSLMANIPVGYSDGYPRKMGN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----GPDIKLDDVALASGT 352 + I G ++G +M+ TM D+T ++ G + +F G I ++ + Sbjct: 331 KAQVIINGQRANVVGVASMNTTMVDVTHIKGVKAGSEVVLFGHSQGETISASEMENNADV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L G+ + Y Sbjct: 391 IFPELYTLWGSANPRVY 407 >gi|262037799|ref|ZP_06011241.1| alanine racemase [Leptotrichia goodfellowii F0264] gi|261748271|gb|EEY35668.1| alanine racemase [Leptotrichia goodfellowii F0264] Length = 374 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 160/380 (42%), Gaps = 33/380 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++L+I+ ++ N + +++ N V+KDNAYGL + I P L F V + Sbjct: 2 LIKLEINRKNIEKNLEKIKSINKN--IICVLKDNAYGLEIKNILPILIENDCFYFAVAYI 59 Query: 66 EEGVKLRL--------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 E ++++ + +I L I + K ++ I + QL Y + Sbjct: 60 GEALEIKKIIQKKYPDKADKIKIMTLNYIEEKEIKKTVKNDIELTIFNFEQLESYINASA 119 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 G ++++TG NRLG + E T ++ + SH++ A++ Sbjct: 120 KGKKLKIHIKLNTGMNRLGFNENEIDKLTEILRGNPNLEIISVFSHISHAEN--KKETEE 177 Query: 178 QLERFRTLI-----SHYKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGTDKINKSHP 231 Q+ ++ ++ + K + +S + Y++ R G+++YG + + Sbjct: 178 QIIKYDKMMSVFDKNSIKYKFKHIQASPLLFKYKEKYNYDFVRTGMAIYGMEP-LKEKVG 236 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + V ++II IRK GE VSYG + L +D IA+ +GYA G + Sbjct: 237 LYNTVKLSSKIINIRKVKKGESVSYGNGEPLEKDGKIAIIPVGYAHGLQKQIENK----- 291 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 IKG ILG+I MDM + DITD +G I G +I L +A Sbjct: 292 -----NAYVLIKGKRSYILGEICMDMIITDITDIEDAVIGSEAVIIGKQGSEEISLSKMA 346 Query: 348 LASGTTNYDLLVRIGTRYAK 367 +GT D+L + + + Sbjct: 347 EWTGTIQDDVLTKWERKIKR 366 >gi|260772889|ref|ZP_05881805.1| alanine racemase [Vibrio metschnikovii CIP 69.14] gi|260612028|gb|EEX37231.1| alanine racemase [Vibrio metschnikovii CIP 69.14] Length = 407 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 148/382 (38%), Gaps = 28/382 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + L+I+L K N + +++ AV+K +AYG G + P + G+ Sbjct: 38 IAQSNAWLEINLGQFKTNIEQFKSHINPSSKICAVMKADAYGNGIRGLMPTVIEQGIPCV 97 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119 +TS E +R Q ++ + + + + N+ +I + Q ++ G Sbjct: 98 AITSNAEARAVRESGFQGQLMRVRSATINEIAAVAELNIEELIGTKQQAMDLAQLGQRLG 157 Query: 120 VSHPYALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA--CADDPS--- 171 L ++ G N + +S ++ + +K Q+ I++H DD Sbjct: 158 TPIKAHLALNDGGMGRNGVDMSHEKGKQEALSITQQKGLQIVGIMTHFPNYNPDDIRAKL 217 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 + N + ++ +A+S L P + RPG LYG + P Sbjct: 218 ATFNQHANWLVEQGPLKREEVQFHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPEYLP 277 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 +V+ + RI + G+ V Y D+++A +GY+DGYP + Sbjct: 278 ---IVSFKTRIASLHHLPTGKTVGYDSTHITDSDTVLANLPVGYSDGYPRKMGN------ 328 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVA 347 + I G ++G +M+ TM D++ ++ G + +FG I +DD+ Sbjct: 329 -----KAQVLINGQWANVVGVTSMNTTMVDVSTIKGVKPGQEVVLFGAQGKKQISVDDIE 383 Query: 348 LASGTTNYDLLVRIGTRYAKFY 369 S +L GT +FY Sbjct: 384 THSDIIFPELYTIWGTANPRFY 405 >gi|167033190|ref|YP_001668421.1| alanine racemase [Pseudomonas putida GB-1] gi|166859678|gb|ABY98085.1| alanine racemase [Pseudomonas putida GB-1] Length = 409 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 72/362 (19%), Positives = 142/362 (39%), Gaps = 27/362 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N +++ +AL++N ++ A L+G ++ AV+K +AYG G + P++ GV V Sbjct: 41 NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIP-VISSVPQLTFYSKLMSCGVS 121 S EE +R ++ + + + ++ V S+ + G + Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLSELEDALQYDMEELVGSAEFARQVDAIAARHGKT 160 Query: 122 HPYALQVDT-GFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSS---H 173 + +++ G +R G+ + + + DD Sbjct: 161 LRIHMALNSSGMSRNGVEMGSWSGRGEALQITDQKHLELVALMTHFAVEDKDDVRKGLAA 220 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 N + + A+S L P + R G +L+G D + + + Sbjct: 221 FNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPERTEYK 278 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + ++ + + AG V Y LTRDS +A +GY+DGY + Sbjct: 279 RAMQFKSHVAAVHSYPAGNTVGYDRTFTLTRDSRLANITVGYSDGYRRVFTN-------- 330 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G I G+ VP++GK++M+ M D+TD ++ G+ + +FG +I ++ Sbjct: 331 ---KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQAGGEITQAEMEEI 387 Query: 350 SG 351 +G Sbjct: 388 NG 389 >gi|262395354|ref|YP_003287207.1| alanine racemase [Vibrio sp. Ex25] gi|262338948|gb|ACY52742.1| alanine racemase [Vibrio sp. Ex25] Length = 409 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 74/377 (19%), Positives = 137/377 (36%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I+L ++N + G + AV+K +AYG G + P + + V S Sbjct: 45 AWLEINLGQFRDNIEQFKSHMDGKTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 E +R + ++ + G+ + D N+ +I + Q SKL Sbjct: 105 AEAQTVRDSGFKGQLMRVRSADIGEIEAAIDLNIEELIGTAEQAKALSKLAEKADKEIKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPS---SHVNS 176 L ++ G N + ++ + + + I++H AD+ S Sbjct: 165 HLALNDGGMGRNGVDMTTKAGKKEALEIAQQDGVNIVGIMTHFPNYNADEVRQKLSSFKD 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + I +A+S L + RPG LYG + ++V Sbjct: 225 SSAWLIKEAGLKREDILLHVANSYTALNVSEAQLDMVRPGGVLYGDLPTNPE---YPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y K +++SL+A +GY+DGYP + Sbjct: 282 SFKTRVASVHHLPKNSTVGYDSSYKTSKESLMANIPVGYSDGYPRKMGNT---------- 331 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + I G + G +M+ TM DIT +E G + +FG I ++ + Sbjct: 332 -AEVLINGQRAKVAGVASMNTTMVDITGIKDVEPGSEVVLFGSQQGKTISAAEMEKHAEV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L G + Y Sbjct: 391 IFPELYTVWGAANPRVY 407 >gi|148547263|ref|YP_001267365.1| alanine racemase [Pseudomonas putida F1] gi|148511321|gb|ABQ78181.1| alanine racemase [Pseudomonas putida F1] Length = 409 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 140/362 (38%), Gaps = 27/362 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N +++ +AL++N ++ A L+G ++ AV+K +AYG G + P++ GV V Sbjct: 41 NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121 S EE +R ++ + + + ++ ++ S + G + Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKT 160 Query: 122 HPYALQVDT-GFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSS---H 173 + +++ G +R G+ + + + DD Sbjct: 161 LRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVEDKDDVRKGLAA 220 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 N + + A+S L P + R G +L+G D + + Sbjct: 221 FNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPARTEYK 278 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + ++ + + AG V Y L RDS +A +GY+DGY + Sbjct: 279 RAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN-------- 330 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G I G+ VP++GK++M+ M D+TD ++ G+ + +FG +I ++ Sbjct: 331 ---KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQAGGEITQAEMEEI 387 Query: 350 SG 351 +G Sbjct: 388 NG 389 >gi|223939404|ref|ZP_03631282.1| alanine racemase [bacterium Ellin514] gi|223891896|gb|EEF58379.1| alanine racemase [bacterium Ellin514] Length = 400 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 142/364 (39%), Gaps = 27/364 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N L+I A ++N M L N + AV+K +AYG G + PA+ A + V Sbjct: 32 NAHAWLEISQPAFEHNLAEMKKLVGPNTQVCAVMKADAYGHGIAMLIPAISRAAIPYVGV 91 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121 TS EE K R + ++ L P + + ++ ++ S+ S L + Sbjct: 92 TSNEEAAKARAAGYKGKLMRLRTATPAEIEAALPYDIEELLGSLTLAEDVSVLAHRHHII 151 Query: 122 HPYALQVDT-GFNRLGL-------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 Y L +++ G +R G+ + + +A + Sbjct: 152 LRYHLALNSAGMSRNGIELKADAGKADALALLRLPNLRIVGIMTHFPVEEVADVRAGLAA 211 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 N+ + A+S L P L RPG +LYG D + Q Sbjct: 212 FNTESAWVIHEGHLDRSKLLLHTANSFATLEVPEARLDLVRPGGALYG--DTVPSHTEYQ 269 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ ++R+ I G + Y LTRDS +A +GY+DGY S Sbjct: 270 RVLSFKSRVAAINAYPKGNTICYDRTFTLTRDSRLANIPVGYSDGYRRVFSN-------- 321 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 I G+ PI+G++TM+ M D+TD ++ GD + +FG +I ++ Sbjct: 322 ---KANVLIHGHRCPIVGRVTMNTVMVDVTDLADVQKGDEVVLFGKQGAAEITQTELEDI 378 Query: 350 SGTT 353 SGT Sbjct: 379 SGTI 382 >gi|256828239|ref|YP_003156967.1| alanine racemase [Desulfomicrobium baculatum DSM 4028] gi|256577415|gb|ACU88551.1| alanine racemase [Desulfomicrobium baculatum DSM 4028] Length = 374 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 163/381 (42%), Gaps = 30/381 (7%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +R +I L AL +N+ + + N A V+K +AYG G + A AL+ AG + + Sbjct: 6 NHVRTRIRLKALVDNYRLIRTRATNP--APVIKSDAYGHGLPEAAAALFAAGARTMAAGT 63 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI--PVISSVPQLTFYSKLMSCGVSH 122 V E L+ P+ + L G + I V S+ L G + Sbjct: 64 VGEAAVLKDTVPEVEVISLLGPLDTADYACVCERDIVAFVGSTEQLLLLEEAARLAGTTV 123 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLER 181 AL+ DTG RLG ++ EA + + ++ SHLA ADDP + Q R Sbjct: 124 RVALKFDTGMARLGFAVDEAAGVADTLDGLEHVRATMACSHLATADDPGQAEYAQEQGGR 183 Query: 182 FRTLISHYK----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPM 232 F ++ + ASLA+S I P H L RPGI+LYG K H + Sbjct: 184 FARILKALHARGLDVRASLANSGAIFGHPALHHDLQRPGIALYGANPFHGTPWEAKGHGL 243 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q + +R++ IR AG+ VSYG + I + A+GYAD Y LS Sbjct: 244 QPAMQVSSRLVQIRTIPAGQSVSYGRTFTAPAEMRIGIVAVGYADNYSRGLS-------- 295 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 + I G VP+LG++ M +T D++ GD I + G I +++A Sbjct: 296 ---AKAQMLIHGKRVPVLGRVCMQLTAVDLSHVPEAAAGDEIFMLGGAGPAAISAEELAG 352 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 GT Y++ +G + Y Sbjct: 353 WWGTITYEVFCLLGQ-NPREY 372 >gi|218459378|ref|ZP_03499469.1| alanine racemase protein [Rhizobium etli Kim 5] Length = 255 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 120/249 (48%), Positives = 167/249 (67%), Gaps = 2/249 (0%) Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 P AL VDTGFNRLGL + +A+ + L++SHLAC DDP++ +N QLE F Sbjct: 3 PCALHVDTGFNRLGLHIDDAIALADDVSRPASFAPVLVMSHLACGDDPTNAMNRQQLESF 62 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 R + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG ++PM+ V TAEARI Sbjct: 63 RRVTAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEARI 122 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I +R AGE VSYG +L RDS +A+ + GYADGY + S +V GG+GFI Sbjct: 123 IQVRTVGAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQAVPQGGQGFI 182 Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 G+ VP+ G+ITMD+T+FD+TD + GDY+++FG ++ LDDVA A+GT Y++L Sbjct: 183 AGHKVPVAGRITMDLTIFDVTDLPENAVRAGDYVELFGKNMPLDDVARAAGTIGYEILTS 242 Query: 361 IGTRYAKFY 369 +G R+ + Y Sbjct: 243 MGLRHERRY 251 >gi|26990430|ref|NP_745855.1| alanine racemase [Pseudomonas putida KT2440] gi|24985399|gb|AAN69319.1|AE016569_3 alanine racemase, putative [Pseudomonas putida KT2440] Length = 409 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 140/362 (38%), Gaps = 27/362 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N +++ +AL++N ++ A L+G ++ AV+K +AYG G + P++ GV V Sbjct: 41 NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121 S EE +R ++ + + + ++ ++ S + G + Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKT 160 Query: 122 HPYALQVDT-GFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSS---H 173 + +++ G +R G+ + + + DD Sbjct: 161 LRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVEDKDDVRKGLAA 220 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 N + + A+S L P + R G +L+G D + + Sbjct: 221 FNEQTDWLIKHARLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPARTEYK 278 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + ++ + + AG V Y L RDS +A +GY+DGY + Sbjct: 279 RAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN-------- 330 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G I G+ VP++GK++M+ M D+TD ++ G+ + +FG +I ++ Sbjct: 331 ---KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQAGGEITQAEMEEI 387 Query: 350 SG 351 +G Sbjct: 388 NG 389 >gi|309775769|ref|ZP_07670764.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53] gi|308916446|gb|EFP62191.1| alanine racemase [Erysipelotrichaceae bacterium 3_1_53] Length = 379 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 87/389 (22%), Positives = 157/389 (40%), Gaps = 33/389 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M N ++I ++ N + LS + AVVK NAYG G E A+ + Sbjct: 1 MMENSRTYVEIHTAYIRENVIHLKQNLSPKTKFMAVVKGNAYGHGIEPCVHAIDDL-CDW 59 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-NLIPVISSVPQLTFYSKLMSC 118 + +++E +++R + + I V + + K + +S+ + + Sbjct: 60 YATATMQEAIRVRAVSREKPILVFGYVTDEEIKQAAAYAITLSAVSTAFLQHISAVCVQQ 119 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSF----NKKLGQLSLIISHLACAD---DPS 171 + L++DTGF+RLG+S E ++ I +HL A + Sbjct: 120 RLQVAVHLKLDTGFHRLGISCCENSSECMEELLPLYALPNIHITGIYTHLVFAGSIQEQE 179 Query: 172 SHVNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226 +Q RF+ I+ + + + +S + P H + R G ++G Sbjct: 180 QAFTQLQYRRFKNCIAALRKLGIDPGICHICNSKAAVHHPQLHMDMVRVGAYMFGLASAQ 239 Query: 227 NKSH-PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + P++ + +AR++L+R+ AGE V YG + + IAV A G+ADGY + Sbjct: 240 EQELIPLKEALLWKARVVLLREIKAGEGVGYGHDFIAEKPTRIAVLAAGFADGYRRCI-- 297 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + + G P++GK+ MDM M D+T + G+Y + G D Sbjct: 298 -------AQSPQSYVLLHGKRAPLVGKVCMDMFMVDVTAIQGLHTGEYAVLCG-QADRDA 349 Query: 346 VALAS------GTTNYDLLVRIGTRYAKF 368 V+ GT ++ V I R + Sbjct: 350 VSSYLLGKIIQGTAG-EITVGITERVNRH 377 >gi|73763191|gb|AAZ83975.1| alanine racemase [Pseudomonas putida] Length = 409 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 75/362 (20%), Positives = 140/362 (38%), Gaps = 27/362 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N ++I AL++N ++ A L G ++ AV+K +AYG G + P++ GV V Sbjct: 41 NSNAWVEISAGALQHNIRTLQAELGGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 100 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121 S EE +R ++ + G+ + ++ ++ S + G + Sbjct: 101 ASNEEARVVRASGFTGQLVRVRLASLGEVEDALQYDMEELVGSAEFARQLDAIAERHGKT 160 Query: 122 HPYALQVDT-GFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSS---H 173 + +++ G +R G+ + + + DD Sbjct: 161 LRIHMALNSSGMSRNGVEMTTWSGRGEALQITDQKHLQLVALMTHFAVEDKDDVRKGLAA 220 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 N + + A+S L P H + R G +L+G T Q Sbjct: 221 FNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEAHLDMVRTGGALFGDTVPTRTE--YQ 278 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ ++ + + AG V Y L RDS +A +GY+DGY + Sbjct: 279 RVMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN-------- 330 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G I G+ VP++GK++M+ M D+TD ++ G+ + +FG +I ++ Sbjct: 331 ---KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQAGREITQAEIEEI 387 Query: 350 SG 351 +G Sbjct: 388 NG 389 >gi|260901465|ref|ZP_05909860.1| alanine racemase [Vibrio parahaemolyticus AQ4037] gi|308107691|gb|EFO45231.1| alanine racemase [Vibrio parahaemolyticus AQ4037] Length = 409 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 67/377 (17%), Positives = 136/377 (36%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL K N + + + AV+K +AYG G + P + + + S Sbjct: 45 TWLEIDLGQFKQNIEQFKSHMNDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E +R + ++ + G+ + D N+ +I ++ Q + + Sbjct: 105 AEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKTNKTVKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 L ++ G N + ++ + + ++ I++H + Sbjct: 165 HLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGSFKE 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + I +A+S L P + RPG LYG + ++V Sbjct: 225 SSAWLIKEADLKRENILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT---NLEYPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y T++S++A +GY+DGYP + Sbjct: 282 SFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNTAD-------- 333 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++G +M+ TM D++D ++ G + +FG I ++ + Sbjct: 334 ---VLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKNADV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L GT + Y Sbjct: 391 IFPELYTIWGTSNPRVY 407 >gi|124009567|ref|ZP_01694241.1| alanine racemase [Microscilla marina ATCC 23134] gi|123984806|gb|EAY24781.1| alanine racemase [Microscilla marina ATCC 23134] Length = 383 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 149/384 (38%), Gaps = 36/384 (9%) Query: 9 LKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++ +AL+ N + + L+G R ++V+K NAYG G + P AGV+ F V S +E Sbjct: 7 IELSQSALQKNINFIKTLAGDGVRMSSVIKGNAYGHGIDLFVPMAEKAGVRHFSVFSADE 66 Query: 68 GVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVSHPYA 125 +++ ++ G H + + N+ I + T Sbjct: 67 ALQVVQSQQHGSKVMIMGHIHNEELLWAIENNVELFIFDLGRLETSLQLAAKNKAQVRIH 126 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV--QLERFR 183 L ++TG NRLGL E L + + ++ V Q+ ++ Sbjct: 127 LHLETGMNRLGLEEDELLKAIDLLKKYPDCFHLEGVCTHYAGAESIANYARVKSQIHEYK 186 Query: 184 TLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTD-----------KIN 227 I ++ + P + R GI YG K + Sbjct: 187 RRTRLLSRHEISPKYQHTACSAALVSYPQTRMDMVRVGILQYGFFPTQETLIQYLKNKED 246 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 K+ P+ V+ ++RI+ ++ GE V YG DS IAV +GYA GY LS Sbjct: 247 KTDPLARVLNWKSRIMSTKEVSTGEFVGYGTTYMAAADSRIAVVPVGYAQGYSRLLSNQ- 305 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 G+ I G + ++G + M++ + D+T++ + GD + + G I + Sbjct: 306 ----------GRVLICGKQLSVIGTVNMNLILVDLTEAPEAQPGDEVVLIGSQGDLSISV 355 Query: 344 DDVALASGTTNYDLLVRIGTRYAK 367 + NY+LL R+ + Sbjct: 356 ASFGEFTNQLNYELLTRLPMSIPR 379 >gi|153836908|ref|ZP_01989575.1| alanine racemase [Vibrio parahaemolyticus AQ3810] gi|149749866|gb|EDM60611.1| alanine racemase [Vibrio parahaemolyticus AQ3810] Length = 409 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 68/377 (18%), Positives = 136/377 (36%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL K N + S + AV+K +AYG G + P + + + S Sbjct: 45 TWLEIDLGQFKQNIEQFKSHMSDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E +R + ++ + G+ + D N+ +I ++ Q + + Sbjct: 105 AEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKTVKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 L ++ G N + ++ + + ++ I++H + Sbjct: 165 HLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGSFKE 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + I +A+S L P + RPG LYG + ++V Sbjct: 225 SSAWLIKEANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT---NLEYPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y T++S++A +GY+DGYP + Sbjct: 282 SFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNTAD-------- 333 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++G +M+ TM D++D ++ G + +FG I ++ + Sbjct: 334 ---VLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKNADV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L GT + Y Sbjct: 391 IFPELYTIWGTSNPRVY 407 >gi|153830040|ref|ZP_01982707.1| putative alanine racemase [Vibrio cholerae 623-39] gi|148874480|gb|EDL72615.1| putative alanine racemase [Vibrio cholerae 623-39] Length = 428 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANMPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|258621589|ref|ZP_05716622.1| Alanine racemase [Vibrio mimicus VM573] gi|258586207|gb|EEW10923.1| Alanine racemase [Vibrio mimicus VM573] Length = 407 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 140/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + + + A++K +AYG G + P + G+ V S Sbjct: 44 WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E +R + + + G+ + D N+ +I + Q + G + Sbjct: 104 EARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177 + ++ G N + ++ + + + + I++H D + Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAISIATQPSLSIVGIMTHFPNYDADEVRTKLASFKQH 223 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + I +A+S L P + RPG LYG + ++V+ Sbjct: 224 SAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + + G V Y +RDS++A +GY+DGYP + Sbjct: 281 FKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ TM D+TD + G + +FG I + ++ + Sbjct: 330 AEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L G +FY Sbjct: 390 FPELYTVWGNSNPRFY 405 >gi|28900856|ref|NP_800511.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633] gi|260362532|ref|ZP_05775452.1| alanine racemase [Vibrio parahaemolyticus K5030] gi|260879223|ref|ZP_05891578.1| alanine racemase [Vibrio parahaemolyticus AN-5034] gi|260896758|ref|ZP_05905254.1| alanine racemase [Vibrio parahaemolyticus Peru-466] gi|34098472|sp|Q87HG4|ALR2_VIBPA RecName: Full=Alanine racemase 2 gi|28809302|dbj|BAC62344.1| putative alanine racemase [Vibrio parahaemolyticus RIMD 2210633] gi|308087318|gb|EFO37013.1| alanine racemase [Vibrio parahaemolyticus Peru-466] gi|308094088|gb|EFO43783.1| alanine racemase [Vibrio parahaemolyticus AN-5034] gi|308115278|gb|EFO52818.1| alanine racemase [Vibrio parahaemolyticus K5030] Length = 409 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 67/377 (17%), Positives = 136/377 (36%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL K N + + + AV+K +AYG G + P + + + S Sbjct: 45 TWLEIDLGQFKQNIEQFKSHMNDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E +R + ++ + G+ + D N+ +I ++ Q + + Sbjct: 105 AEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKTVKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 L ++ G N + ++ + + ++ I++H + Sbjct: 165 HLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGSFKE 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + I +A+S L P + RPG LYG + ++V Sbjct: 225 SSAWLIKEANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT---NLEYPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y T++S++A +GY+DGYP + Sbjct: 282 SFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNTAD-------- 333 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++G +M+ TM D++D ++ G + +FG I ++ + Sbjct: 334 ---VLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKNADV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L GT + Y Sbjct: 391 IFPELYTIWGTSNPRVY 407 >gi|258627600|ref|ZP_05722377.1| Alanine racemase [Vibrio mimicus VM603] gi|258580182|gb|EEW05154.1| Alanine racemase [Vibrio mimicus VM603] Length = 407 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 140/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + + + A++K +AYG G + P + G+ V S Sbjct: 44 WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E +R + + + G+ + D N+ +I + Q + G + Sbjct: 104 EARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177 + ++ G N + ++ + + + + I++H D + Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSIVGIMTHFPNYDADEVRTKLASFKQH 223 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + I +A+S L P + RPG LYG + ++V+ Sbjct: 224 SAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + + G V Y +RDS++A +GY+DGYP + Sbjct: 281 FKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ TM D+TD + G + +FG I + ++ + Sbjct: 330 AEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L G +FY Sbjct: 390 FPELYTVWGNSNPRFY 405 >gi|313498322|gb|ADR59688.1| Alr [Pseudomonas putida BIRD-1] Length = 380 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 140/362 (38%), Gaps = 27/362 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N +++ +AL++N ++ A L+G ++ AV+K +AYG G + P++ GV V Sbjct: 12 NSNAWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAV 71 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVS 121 S EE +R ++ + + + ++ ++ S + G + Sbjct: 72 ASNEEARVVRASGFTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKT 131 Query: 122 HPYALQVDT-GFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSS---H 173 + +++ G +R G+ + + + DD Sbjct: 132 LRIHMALNSSGMSRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVEDKDDVRKGLAA 191 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 N + + A+S L P + R G +L+G D + + Sbjct: 192 FNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFG--DTVPGRTEYK 249 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + ++ + + AG V Y L RDS +A +GY+DGY + Sbjct: 250 RAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN-------- 301 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALA 349 G I G+ VP++GK++M+ M D+TD ++ G+ + +FG +I ++ Sbjct: 302 ---KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQAGGEITQAEMEEI 358 Query: 350 SG 351 +G Sbjct: 359 NG 360 >gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707] gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707] Length = 835 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 161/376 (42%), Gaps = 25/376 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL AL +N S AL + R + K YG+G ++A AL + V Sbjct: 469 TTLEIDLEALVSNLKSYKALLPSETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALA 528 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PY 124 +EG +LR I V+ E + + + F + G+SH P Sbjct: 529 DEGKELRSKGILLPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPV 588 Query: 125 ALQVDTGFNRLGLSLQ-EALDFTHNSFN--KKLGQLSLIISHLACADDP-SSHVNSVQLE 180 +++DTG +R G + E L+ + + + L ++ I +HLA AD+P S Q Sbjct: 589 HIELDTGMHRTGFTPDRETLEHLAQTLHEVEPLIRVQSIFTHLAAADEPTMSDFTEQQFA 648 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + + + +++GI ++H+ + R G+ LYG + + + Sbjct: 649 LYDEGADYLTSQLSYRPLRHVQNTAGIERYNHHHYDMARLGVGLYGISATGSLTLEPVAK 708 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ I+ GE + YG + ++ I + IGYADGY S Sbjct: 709 LR--TTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFSCGV-------- 758 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFG-PDIKLDDVALASGTT 353 G I + PI+G + MD M D++ + GD + IFG P +++ D+A GT Sbjct: 759 --GSVMIHDTLCPIVGNVCMDTCMVDLSPLQGKVAEGDEVIIFGVPGLQVSDLAERIGTI 816 Query: 354 NYDLLVRIGTRYAKFY 369 Y+++ ++ R + Y Sbjct: 817 PYEVISKLSPRIKRTY 832 >gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I] gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I] Length = 835 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 161/376 (42%), Gaps = 25/376 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+IDL AL +N S AL + R + K YG+G ++A AL + V Sbjct: 469 TTLEIDLEALVSNLKSYKALLPSETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALA 528 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PY 124 +EG +LR I V+ E + + + F + G+SH P Sbjct: 529 DEGKELRSKGILLPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPV 588 Query: 125 ALQVDTGFNRLGLSLQ-EALDFTHNSFN--KKLGQLSLIISHLACADDP-SSHVNSVQLE 180 +++DTG +R G + E L+ + + + L ++ I +HLA AD+P S Q Sbjct: 589 HIELDTGMHRTGFTPDRETLEHLAQTLHEVEPLIRVQSIFTHLAAADEPTMSDFTEQQFA 648 Query: 181 RFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + + + +++GI ++H+ + R G+ LYG + + + Sbjct: 649 LYDEGADYLTSQLSYRPLRHVQNTAGIERYNHHHYDMARLGVGLYGISATGSLTLEPVAK 708 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + ++ I+ GE + YG + ++ I + IGYADGY S Sbjct: 709 LR--TTLLQIKTIPDGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFSCGV-------- 758 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFG-PDIKLDDVALASGTT 353 G I + PI+G + MD M D++ + GD + IFG P +++ D+A GT Sbjct: 759 --GSVMIHDTLCPIVGNVCMDTCMVDLSPLQGKVAEGDEVIIFGVPGLQVSDLAERIGTI 816 Query: 354 NYDLLVRIGTRYAKFY 369 Y+++ ++ R + Y Sbjct: 817 PYEVISKLSPRIKRTY 832 >gi|262171654|ref|ZP_06039332.1| alanine racemase [Vibrio mimicus MB-451] gi|261892730|gb|EEY38716.1| alanine racemase [Vibrio mimicus MB-451] Length = 407 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 141/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + + + A++K +AYG G + P + G+ V S Sbjct: 44 WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E +R + + + G+ + D N+ +I + Q + G + Sbjct: 104 EARAVRENGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177 + ++ G N + ++ + + + + I++H D ++ Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSIVGIMTHFPNYDADEVRTKLANFKQH 223 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + I +A+S L P + RPG LYG + ++V+ Sbjct: 224 SAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + + G V Y +RDS++A +GY+DGYP + Sbjct: 281 FKTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ TM D+TD + G + +FG I + ++ + Sbjct: 330 AEVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L G +FY Sbjct: 390 FPELYTVWGNSNPRFY 405 >gi|229529606|ref|ZP_04418996.1| alanine racemase [Vibrio cholerae 12129(1)] gi|229333380|gb|EEN98866.1| alanine racemase [Vibrio cholerae 12129(1)] Length = 428 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|262190944|ref|ZP_06049158.1| alanine racemase [Vibrio cholerae CT 5369-93] gi|262033181|gb|EEY51705.1| alanine racemase [Vibrio cholerae CT 5369-93] Length = 407 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 44 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 104 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQAFDLAELAKQSGKTIKVH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 164 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 223 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 224 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 281 FKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 330 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 390 FPELYTLWGTSNPRFY 405 >gi|256785780|ref|ZP_05524211.1| alanine racemase [Streptomyces lividans TK24] gi|289769672|ref|ZP_06529050.1| alanine racemase [Streptomyces lividans TK24] gi|289699871|gb|EFD67300.1| alanine racemase [Streptomyces lividans TK24] Length = 338 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 141/335 (42%), Gaps = 29/335 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N ++ + A AVVK +AYG G A A AG + Sbjct: 15 RARAEIDLAALRANVRALRERAPGAALMAVVKADAYGHGAIPCARAAVAAGATWLGTATP 74 Query: 66 EEGVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +E + LR P RI G + + L +S++ + + GV Sbjct: 75 QEALALRAAEPGLPDDVRIMCWLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAARAAGV 134 Query: 121 SHPYALQVDTGFNRLGLSL----QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 L+ DTG R G + + + + L +++ + SH ACAD+P + Sbjct: 135 PARVQLKADTGLGRGGCQPGADWERLVGAALRAEEEGLLRVTGLWSHFACADEPGHPSIA 194 Query: 177 VQLERFRTLI--SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227 QL RFR + + +G+ +A+S L P+ HF L RPGI++YG + Sbjct: 195 AQLTRFREMTAYAEQRGLRPEVRHIANSPATLTLPDAHFDLVRPGIAMYGVSPSPEIGTP 254 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++ V+T A + L+++ G VSYG ++ + + +GYADG P S Sbjct: 255 ADFGLRPVMTLAASLALVKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIPRHASSS- 313 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322 G + G + G+I MD + D+ Sbjct: 314 ----------GPVLVDGKWRTVAGRIAMDQFVVDL 338 >gi|320334786|ref|YP_004171497.1| Alanine racemase [Deinococcus maricopensis DSM 21211] gi|319756075|gb|ADV67832.1| Alanine racemase [Deinococcus maricopensis DSM 21211] Length = 375 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 161/366 (43%), Gaps = 26/366 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTS 64 R I L N ++ +SG A VK +AYG G +A AL + V F V Sbjct: 25 RARADIHAGHLVRNARALAQVSG-TPLIAPVKADAYGHGVNLVARALEDEPSVWGFAVAM 83 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E L T + + ++ P + + D + +SS ++ Sbjct: 84 PREAAALAPLT-RKPVLLMTPAAPEEVGPLADLGVRLSVSSAEEVAAL------PAHARV 136 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG NRLG EAL + L + +HLACADDP ++ Q+ F Sbjct: 137 HLKVDTGMNRLGAKPPEALRLGAALEARGLLEGV--YTHLACADDPDLRMSEAQIHAFAA 194 Query: 185 LISHYKGIEASLASSSGIL-LGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARI 242 + + + A + +G+L LG L RPG++LYG + ++ + AR+ Sbjct: 195 VRAAFPAALAHAQNGAGVLALGRVPGLDLARPGLALYGYPPEHLRARAELRPAMRVTARV 254 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + AGE VSYG + D+ +A GYADGYP +G + + Sbjct: 255 GFVHTVPAGESVSYGALWRAPEDTRVATVQFGYADGYPRGATGR-----------ARAVV 303 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRI 361 +G + +LG+I MD M D+ L + VG+++++FG D + D+A S Y++L I Sbjct: 304 RGEVRDVLGRICMDQFMLDV-QGLDVRVGEWVEVFGWDVLSASDLAAWSDGIEYEVLTGI 362 Query: 362 GTRYAK 367 G R + Sbjct: 363 GARVER 368 >gi|46200246|ref|YP_005913.1| alanine racemase [Thermus thermophilus HB27] gi|46197874|gb|AAS82286.1| alanine racemase [Thermus thermophilus HB27] Length = 361 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 150/372 (40%), Gaps = 32/372 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 E +++DL AL N+ + +G V+K +AYG G +A L GV F V + Sbjct: 13 ERAWVEVDLAALWANYRLLAGRAGG-EVIPVLKADAYGHGALPLARFLEGKGVGRFAVAT 71 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 +EEG +LR + + +L +HP + + + L+P +S++ S+ G+ Sbjct: 72 LEEGRRLREGGIKGEVLLLGSLHPLEAEEALELGLVPTLSTLEAAEALSQRARALGLVPR 131 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+VDTG NR+G +EA + + +D + Q RF+ Sbjct: 132 AHLKVDTGMNRVGFPWEEAASALRAVEALGVRVEGVYTHLATAGED--AAFVETQRRRFQ 189 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + +S LL R G++LYG ++ ++ AR Sbjct: 190 EVRRALGEGYFYHLENSLGLLRHGAT-AGVRVGLALYGLVP----GFGLRPILRILARPT 244 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 L+++ AG+ V YGG +A +GYADG P F+ G Sbjct: 245 LVKRLKAGDRVGYGGVYVARGGEWLATLPVGYADGLPWG---------AVRFVKGP---D 292 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQI------FGPDIKLDDVALASGTTNYDL 357 G ++ + G+I+MD T + VG FGP L A A GT Y++ Sbjct: 293 GRLLEVAGRISMDQTTVLLPGP----VGLEAVFEVLSADFGPT-GLLAWAEARGTLPYEV 347 Query: 358 LVRIGTRYAKFY 369 V + R + Y Sbjct: 348 AVHLSRRLPRRY 359 >gi|229521424|ref|ZP_04410843.1| alanine racemase [Vibrio cholerae TM 11079-80] gi|229341522|gb|EEO06525.1| alanine racemase [Vibrio cholerae TM 11079-80] Length = 428 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 71/376 (18%), Positives = 145/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHMPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G V ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRVKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|153802661|ref|ZP_01957247.1| alanine racemase, putative [Vibrio cholerae MZO-3] gi|124121789|gb|EAY40532.1| alanine racemase, putative [Vibrio cholerae MZO-3] Length = 428 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRLSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVIPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|328470761|gb|EGF41672.1| alanine racemase [Vibrio parahaemolyticus 10329] Length = 409 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 67/377 (17%), Positives = 135/377 (35%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L++DL K N + S + AV+K +AYG G + P + + + S Sbjct: 45 TWLEVDLGQFKQNIEQFKSHMSDQTKICAVMKADAYGNGIAGLMPTIIEQQIPCVAIASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 E +R + ++ + G+ + D N+ +I ++ Q + + Sbjct: 105 AEAQVVRDSGFKGQLMRVRSAEIGEIEGALDLNVEELIGTLDQAKAIAALSKKANKTVKV 164 Query: 125 ALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 L ++ G N + ++ + + ++ I++H + Sbjct: 165 HLALNDGGMGRNGIDMTTENGKKEALAIAKQSGVEIVGIMTHFPNYNAEEVRAKLGSFKE 224 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + I +A+S L P + RPG LYG + ++V Sbjct: 225 SSAWLIEKANLKREDILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT---NLEYPSIV 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + V Y T++S++A +GY+DGYP + Sbjct: 282 SFKTRVASLHHLPKNSTVGYDSSFTTTKESVMANLPVGYSDGYPRKMGNTAD-------- 333 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++G +M+ TM D++D ++ G + +FG I ++ + Sbjct: 334 ---VLINGQRAKVVGVTSMNTTMIDVSDIKGVKPGSEVVLFGNQKSQTINAAEIEKNADV 390 Query: 353 TNYDLLVRIGTRYAKFY 369 +L GT + Y Sbjct: 391 IFPELYTIWGTSNPRVY 407 >gi|229525903|ref|ZP_04415308.1| alanine racemase [Vibrio cholerae bv. albensis VL426] gi|229339484|gb|EEO04501.1| alanine racemase [Vibrio cholerae bv. albensis VL426] Length = 428 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARVVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|153827222|ref|ZP_01979889.1| alanine racemase, putative [Vibrio cholerae MZO-2] gi|149738872|gb|EDM53204.1| alanine racemase, putative [Vibrio cholerae MZO-2] Length = 428 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 69/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L++ L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEVSLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|260778604|ref|ZP_05887496.1| alanine racemase [Vibrio coralliilyticus ATCC BAA-450] gi|260604768|gb|EEX31063.1| alanine racemase [Vibrio coralliilyticus ATCC BAA-450] Length = 405 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 73/378 (19%), Positives = 138/378 (36%), Gaps = 26/378 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L+I L K N + LS + V+K +AYG G + P + V + Sbjct: 40 QSNAWLEISLGQFKQNMALFRSHLSSQTKLCVVMKADAYGNGIRGLMPTILELNVPCIAI 99 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S E +R + ++ + + + D ++ +I S+ Q L + Sbjct: 100 ASNAEARTVRDSGFEGQLVRVRSADIQEIEQAMDLDIEELIGSLEQANQIKSLSTDKTIK 159 Query: 123 PYALQVDTGFNRLGLSL--QEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVN 175 + D G +R G+ + ++ + + + I++H D + N Sbjct: 160 VHLALNDGGMSRNGIDMSTEKGKQEALDIAKHQGIDIVGIMTHFPNYDADEVRSKLADFN 219 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + + +++S L P + RPG LYG + ++ Sbjct: 220 QSSAWLIENANLNRDDVLLHVSNSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSI 276 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 V+ + R+ + A V Y RDS++A +GY+DGYP + Sbjct: 277 VSFKTRVASLHNVPANSTVGYDSSYVTKRDSVLANLPVGYSDGYPRKMGNR--------- 327 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 + G P++GK +M+ TM D+TD + G + +FG I + ++ + Sbjct: 328 --AHVIVNGQRAPVVGKTSMNTTMVDVTDVKGVITGQEVTLFGQQANAQISVGEMEEHAE 385 Query: 352 TTNYDLLVRIGTRYAKFY 369 +L GT + Y Sbjct: 386 LIFPELYTVWGTANPRLY 403 >gi|332799232|ref|YP_004460731.1| alanine racemase [Tepidanaerobacter sp. Re1] gi|332696967|gb|AEE91424.1| Alanine racemase [Tepidanaerobacter sp. Re1] Length = 401 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 39/386 (10%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +N L +DL + N ++ G R VVK NAYG G +A +G V Sbjct: 2 ANPTSWLYVDLNTISENIKTIKNYIGATRLLVVVKANAYGHGMYPVAACAVESGADYLGV 61 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 +S+EEG+ LR + + V I P Q + + +L + S + + Sbjct: 62 SSLEEGIFLRKSGIKEPVLVFNTILPEQAEDALNYDLTVTVCSFDTVQALNDAAAKMNKK 121 Query: 122 HPYALQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++DTG R G+ + E + +F + LA + + ++ Sbjct: 122 AFVHVKIDTGLGRFGVLPEHAVEMVHIITANFKNIYIEGIYTHFSLATNESITRKQFNIF 181 Query: 179 LERFRTLISHYKGIE-ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 L + L I + +S+ +L H + R G +YG K+ + Sbjct: 182 LSIIKELEHQGYKIPLKHVCNSTAMLNYAEMHLDMVRVGNLVYGLCPS--KNLKISNPSK 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS------------- 284 ++II ++ G V YG + K R + +A+ GY DG L +S Sbjct: 240 IYSKIIFLKTLPKGHYVGYGNRFKTRRHTTVAIVPFGYYDGLELFISQPNGIWDSLKNLI 299 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGPDIKL 343 + + G ILGKI+M + D+TD + +GD +++ Sbjct: 300 KQILASFGVITANRTVKVNGIQCNILGKISMQSCIVDVTDIKDKVFIGDVVEL-----SA 354 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 + + A+ Y Sbjct: 355 RRI-------------NLSHSIARVY 367 >gi|254286591|ref|ZP_04961547.1| alanine racemase, putative [Vibrio cholerae AM-19226] gi|150423349|gb|EDN15294.1| alanine racemase, putative [Vibrio cholerae AM-19226] Length = 428 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 69/376 (18%), Positives = 144/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKGSTVGYDSTFTSSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|302388874|ref|YP_003824695.1| alanine racemase [Thermosediminibacter oceani DSM 16646] gi|302199502|gb|ADL07072.1| alanine racemase [Thermosediminibacter oceani DSM 16646] Length = 384 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 152/346 (43%), Gaps = 20/346 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++++L AL+ N+ ++ G AVVK +AYG G + +A AL AGV+ F V +EE Sbjct: 8 MEVNLRALRQNYETIRREVG-VPVMAVVKGDAYGHGAKDVALALQEAGVEWFGVEFLEEA 66 Query: 69 VKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYAL 126 V+LR + RI L G +I + ++IP I ++ + +K GVS L Sbjct: 67 VELREAGIKGRILCLTGPVTREDCEIFIEKDVIPTIYNLDRADLLNKTAARRGVSCRVHL 126 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 + DTG R G ++ + +H A A QL F+ ++ Sbjct: 127 KFDTGLGRFGFLYEDLDRVIDGLRSFSHLIYEGAYTHFAEAFAKKPDYTLYQLSVFQRVL 186 Query: 187 S--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 GI+ ++ ++ + P + R G +LYG T N S ++ V + + Sbjct: 187 DKLEQSGIKVAIRHAANSVAAMDFPEARLDMVRIGSALYGITMFKNTSVRLERVARLKVK 246 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT-----------LSGLDSEH 290 II ++ G + YG K RD++I + +GY +G + L + E Sbjct: 247 IIDVKSLPRGSYIGYGRTYKTQRDTVIGIIPVGYFEGLKVQRRNYAFTLVGLLRNIYHEI 306 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 + F+ G +PILG+I M +T D+T + +GD + + Sbjct: 307 KDFLNPVPLVFMDGKPLPILGRIGMQLTAIDLTGT-GAGIGDEVTV 351 >gi|262402336|ref|ZP_06078897.1| alanine racemase [Vibrio sp. RC586] gi|262351118|gb|EEZ00251.1| alanine racemase [Vibrio sp. RC586] Length = 407 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 71/376 (18%), Positives = 140/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + + + A++K +AYG G + P + G+ V S Sbjct: 44 WLEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGILCVGVASNA 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYA 125 E +R + + + + + D N+ +I + Q + G + Sbjct: 104 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC--ADDPSSH---VNSV 177 + ++ G N + ++ + + + + I++H AD+ + Sbjct: 164 MALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLNIVGIMTHFPNYNADEVRAKLAKFKES 223 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + I +A+S L P + RPG LYG + ++V+ Sbjct: 224 SAWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y RDS++A +GY+DGYP + Sbjct: 281 FKTRVASLHHVPKGTTVGYDSTFTTNRDSVLANLPVGYSDGYPRKMGN-----------K 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ TM D+TD + G + +FG I + ++ + Sbjct: 330 AEVLINGQRAKVIGVTSMNTTMVDVTDIKGVLPGQEVALFGQQQKQSIAVSEMENNAELI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 390 FPELYTLWGTSNPRFY 405 >gi|297578895|ref|ZP_06940823.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536489|gb|EFH75322.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 428 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 69/376 (18%), Positives = 143/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAALDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRLSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|294814274|ref|ZP_06772917.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064] gi|294326873|gb|EFG08516.1| Alanine racemase [Streptomyces clavuligerus ATCC 27064] Length = 352 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 143/373 (38%), Gaps = 38/373 (10%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH +E + +DL A+++N + + A AVVK NAYG G +A A AG + Sbjct: 1 MHRSE---ITLDLDAVRHNARQLIKMVDGAELWAVVKGNAYGHGAVPVAGAALEAGARAL 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V ++ EG+ LR P+ARI VL + PG L V L S Sbjct: 58 CVATLGEGLALRERFPRARIVVLGPVGPGSVPAASRAGLECVAHDDASLEALSG------ 111 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + Y ++V+ G NR G ++ A D V ++QL Sbjct: 112 AVEYHIKVNLGLNRYGFD-------RIPDRLREQPVGVFGQFSHAHVD---LEVTALQLA 161 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTA 238 RF + +SS L P R G +L G + N S P++ ++ Sbjct: 162 RFLEQCEAVPRATRHVCNSSAALSLPAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSW 221 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + + +R AG V Y G ++TR ++ V +GY DG+ L +G Sbjct: 222 ISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVVPVGYGDGFVSRL------------VGT 269 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + ++G ++MD + +G + + G + ++ + N++L Sbjct: 270 TVLVGDEPATVIGSVSMDALTVALPRRFP--IGTPVTLIGDGLPMESHLRFASMANWELC 327 Query: 359 VRIGT---RYAKF 368 + R + Sbjct: 328 TGLSNDPLRVHRR 340 >gi|313609784|gb|EFR85237.1| alanine racemase [Listeria monocytogenes FSL F2-208] Length = 314 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 134/329 (40%), Gaps = 28/329 (8%) Query: 52 LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111 AG + F V ++E + LR Q ++ G ++ + N I S Sbjct: 1 AKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFRED 57 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDP 170 + + ++ L+VD+G RLG+ ++EA + QL I +H A AD Sbjct: 58 WLEELTLEAPLRIHLKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQL 117 Query: 171 SSHVNSVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN- 227 + QL +F+T+++ K + +S+ LL P F R GIS+YG T Sbjct: 118 ETSYFEQQLTKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEI 177 Query: 228 ---KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 ++ ++ ++ +++ G+ VSYG T +A IGYADG S Sbjct: 178 KTSLPFELKPALSLYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYS 237 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340 G + G + PI+G++ MD T+ + + G + I G D Sbjct: 238 GF------------HVLVDGELAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGEDNGNT 283 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 I DD A T NY++ + R + Y Sbjct: 284 ITADDAAQYLDTINYEVTCLLNERIPRKY 312 >gi|195953382|ref|YP_002121672.1| alanine racemase [Hydrogenobaculum sp. Y04AAS1] gi|195932994|gb|ACG57694.1| alanine racemase [Hydrogenobaculum sp. Y04AAS1] Length = 343 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 31/359 (8%) Query: 14 TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEGVKLR 72 + NN + N AVVK NAYG+G +++ L + V+ F V +EE V+LR Sbjct: 10 ENILNNISQIYNSV-NKPIIAVVKANAYGMGSAEVSKVLDDNPYVKSFAVACIEEAVELR 68 Query: 73 LYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + I VL G+ + + L PVISS Q + +++DTG Sbjct: 69 EVDVKKPILVLGGVLDLKDVEYLKHYKLTPVISSAYQFDMI-----KNAGIDFHVKLDTG 123 Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HY 189 RLG + H + + L A ++ Q+++F+ ++ Sbjct: 124 MGRLGFFELQEDIIGHPNLKGIMTHL---------ASPLDKDYSAFQIQKFKNIVKSLKR 174 Query: 190 KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249 IE SS+G++ ++ R G+++YG P++ + +A++I ++ Sbjct: 175 NSIEIHYQSSAGLMYEKDFT-TAIRIGLAMYGEKPYEGFDIPIKPIYKVKAKVISLKNFK 233 Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309 G+ +SYGG LT+D+ I V ++GYADG P +L+ G +P+ Sbjct: 234 KGDKISYGGTYTLTKDATIGVVSMGYADGIPKSLANKWYFD-----------FNGAKLPM 282 Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +G +TMDMTMF++ + ++I++GDY+ + T Y+L+ R+G R + Sbjct: 283 VGAVTMDMTMFELPEGVNIKIGDYVDFVNEGQTFSMASKIVKTIPYELMCRMGKRVKRV 341 >gi|332184182|gb|AEE26436.1| Alanine racemase [Francisella cf. novicida 3523] Length = 365 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I++ L+NN + GN R VK NAYG G E I ++ V F V +V E Sbjct: 4 LEINIQTLRNNIKLIKEYVGNVRICFPVKANAYGHGLELIVQHSHDL-VDFFAVANVLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + + ++I+ + + + + Sbjct: 63 FRVLDVVQKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHVNI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A +F L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQKAFESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVEF 182 Query: 189 Y----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 + I L++S G L + + RPGI YG + ++ + + Sbjct: 183 TKELSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLISE 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGYEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINENDVKVGDIVELISDIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRVIR 362 >gi|158425840|ref|YP_001527132.1| alanine racemase [Azorhizobium caulinodans ORS 571] gi|158332729|dbj|BAF90214.1| alanine racemase [Azorhizobium caulinodans ORS 571] Length = 374 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 161/369 (43%), Gaps = 13/369 (3%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + + L+IDL A++ NW ++ A AVVK NAYG G +I P L + G +DF+V Sbjct: 5 TADLATLEIDLGAVRQNWRTVRAQYRGPTLGAVVKQNAYGFGLSRIVPLLSSLGCRDFWV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +EE + +R P AR+FVL+G+ +IPV+ +L + Sbjct: 65 VCIEEALAVRTLAPDARVFVLHGLAGAAPADFRAHRIIPVLMDASELPRVQAEAAARGPL 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 A+Q DTG +RLGLS + + +++ ++HLA +P + N Q RF Sbjct: 125 DVAIQFDTGLSRLGLSRTDVKRLRDDPSPLAGLRIAAYVTHLAHFSNPVARHNDWQWRRF 184 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 R S +S+G+ P H R G +LYG + P+ A I Sbjct: 185 RAWTQALPPAPLSFCASAGVFGPPERHAHHARVGSALYGVETTPSSRQPILPAARLTAPI 244 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + + AG V YGG + + + +A +GY G P + G++ Sbjct: 245 LRVMDVPAGTEVGYGGVYRTPQPARLAHVGVGYGGGLPFSFQRQ-----------AYGYV 293 Query: 303 KGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 G PI+ + M + D++ G +++FGP +D +A A+G ++V Sbjct: 294 GGLPAPIVSGLAMSLMTLDVSGLPEGLAVPGAQVELFGPAQPVDILAAAAGVAPNVVMVS 353 Query: 361 IGTRYAKFY 369 G R + Y Sbjct: 354 AGARTRRVY 362 >gi|83591223|ref|YP_431232.1| alanine racemase [Moorella thermoacetica ATCC 39073] gi|83574137|gb|ABC20689.1| alanine racemase [Moorella thermoacetica ATCC 39073] Length = 409 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 146/384 (38%), Gaps = 40/384 (10%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ TAL +N ++ AL + + R AV+K +AYG G ++A +AG VT++ Sbjct: 14 WITIEATALAHNLKAVKALLAPSTRLLAVIKADAYGAGAVEVARIFLDAGADYLGVTTLA 73 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSHPYA 125 EG++LR A + ++ + P + L +SS + + G Sbjct: 74 EGLELRRAGIAAPVLLMSPLLPEELPAAIAAGLTLTVSSRSGAEAIAAAAAATGHRARVH 133 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL---ACADDPSSHVNSVQLERF 182 L+V+TG R GL +L + SHL A + Q Sbjct: 134 LKVETGLQRTGLEAAAVAPLAREILTWPGVELEGVYSHLAEAARPAAARRQMACFQQVLA 193 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHPMQTVVTAEA 240 H + +S+G+L P H + R G LYG + ++ +A Sbjct: 194 ELEEEHIAIPLRHICNSTGLLTHPEMHLDMVRTGTLLYGQFPYQAPRRGLALKDPWQFKA 253 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEHSPS 293 RI+ I AG V YGG + + + +AV +GYADG+ P L+ L + Sbjct: 254 RILFIHDVAAGTPVGYGGDYVVKKATRLAVIPVGYADGFALTAVARPKNLNDLARYLVKT 313 Query: 294 VFL--------GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 G I G P++G++ M ++M D+ +EVG + + Sbjct: 314 FLAYLGRGGGEGTTVIIGGRTAPVVGRVGMQLSMVDVGHLPEVEVGQIVTLDIRRPTA-- 371 Query: 346 VALASGTTNYDLLVRIGTRYAKFY 369 +R + Y Sbjct: 372 ----------------SSRLPRVY 379 >gi|320158793|ref|YP_004191171.1| alanine racemase [Vibrio vulnificus MO6-24/O] gi|319934105|gb|ADV88968.1| alanine racemase [Vibrio vulnificus MO6-24/O] Length = 408 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 69/377 (18%), Positives = 131/377 (34%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I L K+N + ++ + AV+K +AYG G + P + + + S Sbjct: 44 AWLEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASN 103 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHP 123 E +R ++ + + + D + +I S Q + Sbjct: 104 AEAKLVRESGFTGQLIRVRSASYSEIEQGLDLQIEELIGSEQQARELANLAEKYSKTIKV 163 Query: 124 YALQVDTGFNRLGLSLQ----EALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNS 176 + D G R G+ + + + + A+D N Sbjct: 164 HLALNDGGMGRNGIDMSTERGQKEAVAIATHPSVAVVGIMTHFPNYNAEDVRTKLKSFNQ 223 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + I +A+S L P + RPG LYG + ++V Sbjct: 224 HAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIV 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + R+ + AG V Y D+++A +GY+DGYP + Sbjct: 281 AFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRKMGN----------- 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 + I G ++G +M+ TM D+++ + GD + +FG I + ++ + Sbjct: 330 KAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFGAQKNQHISVGEMEENAEV 389 Query: 353 TNYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 390 IFPELYTIWGTSNPRFY 406 >gi|254388378|ref|ZP_05003613.1| alanine racemase [Streptomyces clavuligerus ATCC 27064] gi|197702100|gb|EDY47912.1| alanine racemase [Streptomyces clavuligerus ATCC 27064] Length = 367 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 143/373 (38%), Gaps = 38/373 (10%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MH +E + +DL A+++N + + A AVVK NAYG G +A A AG + Sbjct: 16 MHRSE---ITLDLDAVRHNARQLIKMVDGAELWAVVKGNAYGHGAVPVAGAALEAGARAL 72 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V ++ EG+ LR P+ARI VL + PG L V L S Sbjct: 73 CVATLGEGLALRERFPRARIVVLGPVGPGSVPAASRAGLECVAHDDASLEALSG------ 126 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 + Y ++V+ G NR G ++ A D V ++QL Sbjct: 127 AVEYHIKVNLGLNRYGFD-------RIPDRLREQPVGVFGQFSHAHVD---LEVTALQLA 176 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTA 238 RF + +SS L P R G +L G + N S P++ ++ Sbjct: 177 RFLEQCEAVPRATRHVCNSSAALSLPAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSW 236 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + + +R AG V Y G ++TR ++ V +GY DG+ L +G Sbjct: 237 ISCLAQVRNLPAGAAVGYEGAHRVTRPTVTGVVPVGYGDGFVSRL------------VGT 284 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + ++G ++MD + +G + + G + ++ + N++L Sbjct: 285 TVLVGDEPATVIGSVSMDALTVALPRRFP--IGTPVTLIGDGLPMESHLRFASMANWELC 342 Query: 359 VRIGT---RYAKF 368 + R + Sbjct: 343 TGLSNDPLRVHRR 355 >gi|229515688|ref|ZP_04405147.1| alanine racemase [Vibrio cholerae TMA 21] gi|229347457|gb|EEO12417.1| alanine racemase [Vibrio cholerae TMA 21] Length = 428 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 143/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|153216974|ref|ZP_01950738.1| alanine racemase, putative [Vibrio cholerae 1587] gi|124114006|gb|EAY32826.1| alanine racemase, putative [Vibrio cholerae 1587] Length = 428 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 143/376 (38%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHVPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|313900105|ref|ZP_07833605.1| alanine racemase [Clostridium sp. HGF2] gi|312955157|gb|EFR36825.1| alanine racemase [Clostridium sp. HGF2] Length = 381 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 162/380 (42%), Gaps = 33/380 (8%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +I ++ N + L+ R AVVK NAYG G E A+ + + +++E Sbjct: 11 AEIHTERIRENVMQLKRHLTAGTRFMAVVKGNAYGHGIEPCVQAMDDL-CDWYGTATMQE 69 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYAL 126 +++R + + I V + + + + N+ S L+ + L Sbjct: 70 ALRVRSVSGEKPILVFGYVSDEEIHLAAENNITLSAFSATFLSHISECCAGMNLKAAVHL 129 Query: 127 QVDTGFNRLGLSLQ-------EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++DTGF+R+G+ E L + N ++ + + + A ++ +Q Sbjct: 130 KLDTGFHRMGIDCCSSIADCVEQLLPLFSLPNIEITGMYTHLVYGAGSNQRELAFTELQF 189 Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG-GTDKINKSHPMQ 233 +RF++ I + + + +S + P+ H + R G ++G + + P++ Sbjct: 190 QRFQSCIRALQERKIDTGICHICNSKAAIHAPDMHMDMVRVGAYIFGLASASEQRLIPLR 249 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V+ +ARI+L+R AGE V YG + IAV A G+ADGY + + Sbjct: 250 EVLVWKARIVLLRDIAAGEGVGYGHAFIAKQPVRIAVLAAGFADGYRRCI---------A 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS--- 350 I G P++GK+ MDM M D+TD +++VG+Y + G D V+ Sbjct: 301 QSPQSYVSIHGRPAPLIGKVCMDMFMVDVTDIEAVQVGEYALLSGDDGT-GAVSSYLLGQ 359 Query: 351 ---GTTNYDLLVRIGTRYAK 367 GT ++ V + R + Sbjct: 360 IIQGTAG-EIAVGMSDRVQR 378 >gi|262165566|ref|ZP_06033303.1| alanine racemase [Vibrio mimicus VM223] gi|262025282|gb|EEY43950.1| alanine racemase [Vibrio mimicus VM223] Length = 363 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 69/375 (18%), Positives = 140/375 (37%), Gaps = 28/375 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++I L ++N + + + + A++K +AYG G + P + G+ V S E Sbjct: 1 MEISLGQFQSNIEQFKSHMNSDTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNAE 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126 +R + + + G+ + D N+ +I + Q + G + + Sbjct: 61 ARAVRESGFKGELIRVRSASLGEMSAVLDLNIEELIGTHQQAMELAELAKKNGKTVKVHM 120 Query: 127 QVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSVQ 178 ++ G N + ++ + + + + I++H D + Sbjct: 121 ALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLNIVGIMTHFPNYDADEVRTKLASFKQHS 180 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + I +A+S L P + RPG LYG + ++V+ Sbjct: 181 AWLMEQANLKREDITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIVSF 237 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + R+ + + G V Y +RDS++A +GY+DGYP + Sbjct: 238 KTRVASLHQLPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------KA 286 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + I G ++G +M+ TM D+TD + G + +FG I + ++ + Sbjct: 287 EVLINGQRAKVVGVTSMNTTMVDVTDIKGVLPGQEVALFGQQKNQSIAVSEMENNAELIF 346 Query: 355 YDLLVRIGTRYAKFY 369 +L G +FY Sbjct: 347 PELYTVWGNSNPRFY 361 >gi|27366912|ref|NP_762439.1| alanine racemase [Vibrio vulnificus CMCP6] gi|34098524|sp|Q8D6Q0|ALR2_VIBVU RecName: Full=Alanine racemase 2 gi|27358479|gb|AAO07429.1| alanine racemase [Vibrio vulnificus CMCP6] Length = 408 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 135/379 (35%), Gaps = 32/379 (8%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I L K+N + ++ + AV+K +AYG G + P + + + S Sbjct: 44 AWLEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASN 103 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHP 123 E +R + + + + + ++ +I S Q + Sbjct: 104 AEAKLVRESGFEGELIRVRSASTSEIEQALSLDIEELIGSEQQARELASLAEKYSKTIKV 163 Query: 124 YALQVDTGFNRLGLS------LQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHV 174 + D G R G+ +EA+ + +G + A+D Sbjct: 164 HLALNDGGMGRNGIDMSTERGPKEAVAIATHPSVAVVG--IMTHFPNYNAEDVRTKLKSF 221 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 N + + I +A+S L P + RPG LYG + + Sbjct: 222 NQHAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPS 278 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 +V + R+ + AG V Y D+++A +GY+DGYP + Sbjct: 279 IVAFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRKMGN--------- 329 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALAS 350 + I G ++G +M+ TM D+++ + GD + +FG I + ++ + Sbjct: 330 --KAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFGAQKNQHISVGEMEENA 387 Query: 351 GTTNYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 388 EVIFPELYTIWGTSNPRFY 406 >gi|54303604|ref|YP_133597.1| alanine racemase [Photobacterium profundum SS9] gi|46917035|emb|CAG23797.1| putative alanine racemase [Photobacterium profundum SS9] Length = 405 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 73/376 (19%), Positives = 138/376 (36%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L++ L K+N + + + AV+K +AYG G + P + + + S Sbjct: 42 WLEVSLGQFKSNIEQFKSHIKADTKICAVMKADAYGNGIFGLMPTILEQQIPCVAIASNA 101 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHPY 124 E +R + ++ + G+ K D N+ +I S Q F ++ + + + Sbjct: 102 EARAVRESGFKGQLLRVRSASLGEIKQSLDLNIEELIGSHQQAKFIAELGVERNQKINVH 161 Query: 125 ALQVDTGFNRLGLSLQ----EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL- 179 D G R G+ + +A + + AD + Q Sbjct: 162 LALNDGGMGRNGIDMSTEQGKAEALDIATQANLNIVGIMTHFPNYNADKVRVKLKDFQTN 221 Query: 180 --ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + +A+S + P + RPG LYG + ++V+ Sbjct: 222 SSWLIKQADLKRDELTLHVANSYVSINVPEAQLDMVRPGGVLYGDLPTNPE---YPSIVS 278 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + RI I + A + V Y RDS++A +GY+DGYP + Sbjct: 279 FKTRIASIHQLPASQTVGYDSTYITKRDSVLANLPVGYSDGYPRRMGNQAD--------- 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTT 353 I G ++G +M+ ++ DITD ++ G + +FG I + ++ S Sbjct: 330 --VIINGQRAKVVGVTSMNTSIVDITDIKGVKQGQEVTLFGKQKNVQISVAEMEDYSKLI 387 Query: 354 NYDLLVRIGTRYAKFY 369 +L G ++Y Sbjct: 388 FPELYTMWGQANPRYY 403 >gi|20137517|sp|Q9KSE5|ALR2_VIBCH RecName: Full=Alanine racemase 2 Length = 392 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 142/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 29 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 88 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + D N+ +I + Q ++L G + Sbjct: 89 EARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKTLKVH 148 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 149 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 208 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 209 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 265 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + V Y +RDS++A +GY+DGYP + Sbjct: 266 FKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 314 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 315 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 374 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 375 FPELYTLWGTSNPRFY 390 >gi|121586566|ref|ZP_01676352.1| alanine racemase, putative [Vibrio cholerae 2740-80] gi|121726850|ref|ZP_01680062.1| alanine racemase, putative [Vibrio cholerae V52] gi|147673980|ref|YP_001216876.1| alanine racemase [Vibrio cholerae O395] gi|153819283|ref|ZP_01971950.1| alanine racemase, putative [Vibrio cholerae NCTC 8457] gi|153822911|ref|ZP_01975578.1| alanine racemase, putative [Vibrio cholerae B33] gi|227081483|ref|YP_002810034.1| alanine racemase, putative [Vibrio cholerae M66-2] gi|229505102|ref|ZP_04394612.1| alanine racemase [Vibrio cholerae BX 330286] gi|229511228|ref|ZP_04400707.1| alanine racemase [Vibrio cholerae B33] gi|229518346|ref|ZP_04407790.1| alanine racemase [Vibrio cholerae RC9] gi|229608106|ref|YP_002878754.1| alanine racemase [Vibrio cholerae MJ-1236] gi|254848434|ref|ZP_05237784.1| alanine racemase [Vibrio cholerae MO10] gi|298498598|ref|ZP_07008405.1| alanine racemase [Vibrio cholerae MAK 757] gi|9655801|gb|AAF94470.1| alanine racemase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549245|gb|EAX59277.1| alanine racemase, putative [Vibrio cholerae 2740-80] gi|121630754|gb|EAX63139.1| alanine racemase, putative [Vibrio cholerae V52] gi|126510186|gb|EAZ72780.1| alanine racemase, putative [Vibrio cholerae NCTC 8457] gi|126519563|gb|EAZ76786.1| alanine racemase, putative [Vibrio cholerae B33] gi|146315863|gb|ABQ20402.1| putative alanine racemase [Vibrio cholerae O395] gi|227009371|gb|ACP05583.1| alanine racemase, putative [Vibrio cholerae M66-2] gi|227013229|gb|ACP09439.1| alanine racemase, putative [Vibrio cholerae O395] gi|229345061|gb|EEO10035.1| alanine racemase [Vibrio cholerae RC9] gi|229351193|gb|EEO16134.1| alanine racemase [Vibrio cholerae B33] gi|229357325|gb|EEO22242.1| alanine racemase [Vibrio cholerae BX 330286] gi|229370761|gb|ACQ61184.1| alanine racemase [Vibrio cholerae MJ-1236] gi|254844139|gb|EET22553.1| alanine racemase [Vibrio cholerae MO10] gi|297542931|gb|EFH78981.1| alanine racemase [Vibrio cholerae MAK 757] Length = 428 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 142/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 65 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 124 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + D N+ +I + Q ++L G + Sbjct: 125 EARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKTLKVH 184 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 185 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 244 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 245 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 301 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + V Y +RDS++A +GY+DGYP + Sbjct: 302 FKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 350 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 351 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 410 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 411 FPELYTLWGTSNPRFY 426 >gi|161582006|ref|NP_230956.2| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|255745708|ref|ZP_05419656.1| alanine racemase [Vibrio cholera CIRS 101] gi|262159017|ref|ZP_06030129.1| alanine racemase [Vibrio cholerae INDRE 91/1] gi|262169374|ref|ZP_06037066.1| alanine racemase [Vibrio cholerae RC27] gi|255736783|gb|EET92180.1| alanine racemase [Vibrio cholera CIRS 101] gi|262022187|gb|EEY40896.1| alanine racemase [Vibrio cholerae RC27] gi|262029202|gb|EEY47854.1| alanine racemase [Vibrio cholerae INDRE 91/1] Length = 407 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 142/376 (37%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + + N + A++K +AYG G + P + G+ V S Sbjct: 44 WLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + D N+ +I + Q ++L G + Sbjct: 104 EARAVRESGFKGELIRVRSASLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKTLKVH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 164 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 223 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 224 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + V Y +RDS++A +GY+DGYP + Sbjct: 281 FKTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 330 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAELI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 390 FPELYTLWGTSNPRFY 405 >gi|32265965|ref|NP_859997.1| alanine racemase [Helicobacter hepaticus ATCC 51449] gi|32262014|gb|AAP77063.1| alanine racemase [Helicobacter hepaticus ATCC 51449] Length = 413 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 163/365 (44%), Gaps = 27/365 (7%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++N F +++D+ A KNN ++GNA+ AV+K NAYG G K+ P + + Sbjct: 37 NTNSF--MEVDIKAFKNNIKVAKKIAGNAKVCAVLKANAYGAGISKVLPTIIEEKIPCVA 94 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 +TS EE +R I + G+ K N+ V+ ++ Q L G Sbjct: 95 ITSNEEARVIRKMKYTGEILRIRTATMGEIKDGLKYNITEVLGNLDQAKKVDSLAKTIGK 154 Query: 121 SHPYALQVDTG---FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 P +++++G N + LS + + ++ +++H D N Sbjct: 155 KLPIHIKLNSGGMDRNGIDLSTDKGKESAVKLATLPHLKIKGLMTHFPYDDTSKVKENLK 214 Query: 178 QLER---FRTLISHYKGIEASLASSSGI--LLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 E F + + L +++ + P + RPG +YG +++ P+ Sbjct: 215 HFEEDTDFLISKAKLDRNKLVLHAAASYAAVQVPQSRLDMIRPGKLIYG-YGGGDENLPI 273 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 Q +++ ++++ +I + G VSY G LTRDS +A +GY DGY +LS Sbjct: 274 QQIMSLKSQVAVINEYPKGSKVSYDGTHTLTRDSKLANIPVGYYDGYAKSLSNQ------ 327 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 GK I+G+ VP++G++T + M D+TD I+ GD + +FG +I + Sbjct: 328 -----GKVLIRGHKVPVVGRVTKNTFMVDVTDYPDIKAGDEVVLFGKQCGNEITQAEFEK 382 Query: 349 ASGTT 353 +GT Sbjct: 383 GTGTI 387 >gi|37676689|ref|NP_937085.1| alanine racemase [Vibrio vulnificus YJ016] gi|37201232|dbj|BAC97055.1| alanine racemase [Vibrio vulnificus YJ016] Length = 408 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 68/377 (18%), Positives = 131/377 (34%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I L K+N + ++ + AV+K +AYG G + P + + + S Sbjct: 44 AWLEISLGQFKSNIEQFKSHIAPQTKICAVMKADAYGNGIRGLMPTILEQQIPCVAIASN 103 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--LMSCGVSHP 123 E +R + + + + + ++ +I S Q + Sbjct: 104 AEAKLVRESGFEGELIRVRSASTSEIEQALSLDIEELIGSEQQARELASLAEKYSKTIKV 163 Query: 124 YALQVDTGFNRLGLSLQ----EALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNS 176 + D G R G+ + + + + A+D N Sbjct: 164 HLALNDGGMGRNGIDMSTERGQKEAVAIATHPSVAVVGIMTHFPNYNAEDVRTKLKSFNQ 223 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + I +A+S L P + RPG LYG + ++V Sbjct: 224 HAQWLMESAGLKREEITLHVANSYTALNVPEAQLDMVRPGGVLYGDLPTNPE---YPSIV 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + R+ + AG V Y D+++A +GY+DGYP + Sbjct: 281 AFKTRVASLHSLPAGSTVGYDSTFTTANDAVMANLTVGYSDGYPRKMGN----------- 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGT 352 + I G ++G +M+ TM D+++ + GD + +FG I + ++ + Sbjct: 330 KAQVLINGQRANVVGVASMNTTMVDVSNIKGVLPGDEVTLFGAQKNQHISVGEMEENAEV 389 Query: 353 TNYDLLVRIGTRYAKFY 369 +L GT +FY Sbjct: 390 IFPELYTIWGTSNPRFY 406 >gi|55980031|ref|YP_143328.1| alanine racemase [Thermus thermophilus HB8] gi|55771444|dbj|BAD69885.1| alanine racemase [Thermus thermophilus HB8] Length = 360 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 91/373 (24%), Positives = 149/373 (39%), Gaps = 32/373 (8%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++DL AL N+ + +G V+K +AYG G +A L GV F V Sbjct: 11 QARAWVEVDLAALWANYRLLAGRAGG-EVIPVLKADAYGHGALPLARFLEGKGVGRFAVA 69 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++EEG +LR + + +L +HP + + L+P +S++ S+ G+ Sbjct: 70 TLEEGRRLREGGIKGEVLLLGSLHPLEAEEALRLGLVPTLSNLEAAEALSQRARALGLVP 129 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG NR+G +EA+ + + +D + Q RF Sbjct: 130 RAHLKVDTGMNRVGFPSEEAVSALRAVEALGVRVEGVYTHLATAGED--AAFVETQRRRF 187 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + +S LL R G++LYG ++ ++ AR Sbjct: 188 QEVRRALGEGYFYHLENSLGLLRHGAT-AGVRVGLALYGLVP----GFGLRPILRILARP 242 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 L+++ AG+ V YGG +A +GYADG P F+ G Sbjct: 243 TLVKRLKAGDRVGYGGVYVARGGEWLATLPVGYADGLPWG---------AVRFVKGP--- 290 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI------FGPDIKLDDVALASGTTNYD 356 G ++ + G+I+MD T + VG FGP L A A GT Y+ Sbjct: 291 DGRLLEVAGRISMDQTTVLLPGP----VGLEAVFEVLSADFGPT-GLLAWAEARGTLPYE 345 Query: 357 LLVRIGTRYAKFY 369 + V + R + Y Sbjct: 346 VAVHLSRRLPRRY 358 >gi|312882516|ref|ZP_07742257.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369916|gb|EFP97427.1| alanine racemase [Vibrio caribbenthicus ATCC BAA-2122] Length = 407 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 66/376 (17%), Positives = 137/376 (36%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++L+ + N L+ R AV+K +AYG G + P + + + S Sbjct: 44 WLEVNLSQFRANIEQFETHLAQGTRICAVMKADAYGNGIYGLMPIIIEKKIPCIAIASNS 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYA 125 E +R + + + + + K N+ ++ +V Q+ + + Sbjct: 104 EAKAVREAGFKGELIRVRSANLKEVKEGLGLNIEELVGTVDQIKEFEELSREQATPIKIH 163 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177 L ++ G N L ++ E ++ I++H D + + Sbjct: 164 LALNDGGMGRNGLDMTTDEGQAHAVRIIESPNIEIVGIMTHFPNYDADEVKQKLASFKTN 223 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 F K + +A+S + P + RPG LYG + ++V+ Sbjct: 224 TQWIFDNTTLERKDVILHVANSYASVNVPESQLDMVRPGGVLYGDLPTNPE---YPSIVS 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + RI + A V Y + S++A +GY+DGYP + Sbjct: 281 FKTRIASLHNLPANSTVGYDSTYTTEKKSVLANLPVGYSDGYPRKMGNR----------- 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + + G ++G +M+ TM D+++ + G + +FG I + ++ + Sbjct: 330 AQVLVNGQRAKVVGVTSMNTTMVDVSNVKGVLPGQEVTLFGQQKQEAISIGEMEEHADVI 389 Query: 354 NYDLLVRIGTRYAKFY 369 +L G ++Y Sbjct: 390 FPELYTVWGNANPRYY 405 >gi|145298692|ref|YP_001141533.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851464|gb|ABO89785.1| alanine racemase [Aeromonas salmonicida subsp. salmonicida A449] Length = 408 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 140/350 (40%), Gaps = 24/350 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 + L++DLTA + N ++ G+ + A++K +AYG G + + P++ A + Sbjct: 37 QTASNAWLEVDLTAFEQNLQTLKTRLGDKGPQICAIMKADAYGHGIDLLVPSVVKANIPC 96 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 + S EE R R+ + P + + L ++ S+ S + Sbjct: 97 IGIASNEEARVAREKGFSGRLMRVRAATPIEVEQALPYKLEELVGSLVSAQGISDIALRH 156 Query: 119 GVSHPYALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + P + +++ N + L L +A K I++H + + Sbjct: 157 HTTIPVHVALNSAGMSRNGIDLRLADAKQDALAMLKLKGITPVGIMTHFPVEEKEDVKLG 216 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 Q + + I A+S L P+ +F + RPG LYG D I Sbjct: 217 LAQFKLDSQWLLEAGKLDRSKITIHAANSFATLAVPDAYFDMVRPGGLLYG--DSIPSYT 274 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + V+ + ++ + AG V Y L RDS +A +GY+DGY LS Sbjct: 275 EYKRVMAFKTQVASVNHYAAGNTVGYDRTFTLKRDSWLANLPLGYSDGYRRALSN----- 329 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 I+G VP++GK +M+ M D+TD ++ GD + +FG Sbjct: 330 ------KAYVLIQGQKVPVVGKTSMNTIMVDVTDLKGVKPGDEVVLFGRQ 373 >gi|167629016|ref|YP_001679515.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1] gi|167591756|gb|ABZ83504.1| alanine racemase, putative [Heliobacterium modesticaldum Ice1] Length = 394 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 144/353 (40%), Gaps = 24/353 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++D+ AL +N S+ G+ + VVK NAYG G + A L GV VT V Sbjct: 4 WVEVDMDALAHNARSIRQYLGDEKILYGVVKANAYGCGIVECARCLVENGVDRLAVTHVS 63 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPY 124 EGV+LR A I V+ + + L +S V + ++ P Sbjct: 64 EGVQLRRSGIDAPILVMAPFMAEETGDLVRFGLTASVSDVDRAVQIAQEARRQGRRGLPV 123 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++V+TG R G+ A + L +HLA A Q+ RF Sbjct: 124 HIKVETGLGRTGVVAAAAPLLVAAIVGQDELYLEGAFTHLATAATGDVRQVHRQVARFLE 183 Query: 185 LISHYKGIE------ASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVT 237 ++ + +A+S+ L P YHF R G LYG + ++ V Sbjct: 184 TVAAMEACAGFSIPVKHVANSAAALAFPQYHFDGVRIGTLLYGQPAGPVAAGLALRDVWR 243 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----------PLTLSGLD 287 +AR+ + G V YG R++ +AV +GY DGY L+ + Sbjct: 244 LKARVAHVATLPPGHGVGYGRAYVTRRETRVAVLPVGYVDGYQLEPVSVPVSLWDLAKVL 303 Query: 288 SEHSPSVFLGGK----GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 + S + F G I P+LGK+ M MTM D+TD +++G +Q+ Sbjct: 304 VKTSAAYFGLGPTARSVRIGERRAPVLGKVAMQMTMIDVTDIPDVQLGTVVQL 356 >gi|254374164|ref|ZP_04989646.1| alanine racemase [Francisella novicida GA99-3548] gi|151571884|gb|EDN37538.1| alanine racemase [Francisella novicida GA99-3548] Length = 365 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I + L+NN + G+A+ VK NAYG G E I ++ V F V +V E Sbjct: 4 LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + + ++I+ I + + + Sbjct: 63 FRVLDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHVNI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQQAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 Y----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 +GI L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQGIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRAIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|328676829|gb|AEB27699.1| Alanine racemase [Francisella cf. novicida Fx1] Length = 365 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I L+NN + G+A+ VK NAYG G E I ++ V F V +V E Sbjct: 4 LEISAQTLRNNIRIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + + ++I+ + + + + Sbjct: 63 FRVLDVVEKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHVNL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF ++ Sbjct: 123 NTGMNRMGVDYSDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDGIVEF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRAIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|319779710|ref|YP_004130623.1| Alanine racemase [Taylorella equigenitalis MCE9] gi|317109734|gb|ADU92480.1| Alanine racemase [Taylorella equigenitalis MCE9] Length = 412 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 147/381 (38%), Gaps = 37/381 (9%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++D+ A +NN + L +G ++ A++K +AYG G + P++ V + S Sbjct: 43 AWIEVDVQAFENNIAELQKLLNGKSKVCAILKADAYGHGINLLMPSIIKMNVPCIGIASN 102 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 EE R + + I + + K ++ ++ V Q + L G Sbjct: 103 EEARIARAHNYEGTIMRVRAASINEIKDGLKYDMEELVGDVTQAQTINALAKEAGKDVRI 162 Query: 125 ALQVDTG---FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH-----VNS 176 + +++ N + +S ++ I++H ++ N Sbjct: 163 HISLNSAGMDRNGIDMSTDNGRAEALELTKFSNLKVVGIMTHYPEENEEIIRKDLVRFNE 222 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + I A+S L P HF + RPG LYG D I + ++ Sbjct: 223 DSKWLIENAGLNRNQIVIHTANSYTTLTVPEAHFDMVRPGGLLYG--DSIPTRTEYKRIL 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + ++R+ I G V Y KL RDS++A GY+DGY S Sbjct: 281 SFKSRVANINHYPKGSTVGYDRTFKLERDSMLANLPFGYSDGYRRIFSN----------- 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-------PDIKLDDV--A 347 G I G+ VP++G+++M+ TM D+TD I G + IFG ++++ A Sbjct: 330 KGYVLINGHKVPVVGRVSMNTTMVDVTDFPDILEGAEVVIFGTQGDAKVEQADIEEINGA 389 Query: 348 LASGTTNYDLLVRIGTRYAKF 368 L + L G + Sbjct: 390 LLAD-----LYTVWGNSNPRI 405 >gi|254372706|ref|ZP_04988195.1| alanine racemase [Francisella tularensis subsp. novicida GA99-3549] gi|151570433|gb|EDN36087.1| alanine racemase [Francisella novicida GA99-3549] Length = 365 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I + L+NN + G+A+ VK NAYG G E I ++ V F V +V E Sbjct: 4 LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + + ++I+ I + + + Sbjct: 63 FRVLDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHVNI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 Y----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 +GI L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQGIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|114567922|ref|YP_755076.1| alanine racemase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338857|gb|ABI69705.1| Alanine racemase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 399 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 145/354 (40%), Gaps = 25/354 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+ID+ A+K N + +L ++ V+K NAYG G +A LY GV F V+ + Sbjct: 9 WLEIDIDAVKQNLEGVKSLLDSSVHLLVVLKANAYGHGAVNMARFLYQNGVDFFAVSFLS 68 Query: 67 EGVKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPY 124 E ++LR ++ I V + Q K ++ ISS+ +++ Sbjct: 69 EALELRKAGIRSSILVFSPVVDEEQVKEAIKNHITLSISSLFDSQLLNQVSERLNQPLRV 128 Query: 125 ALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+VD+G R G +++E + + I +H+A A + Q RF Sbjct: 129 HLKVDSGLGRFGFTNIEEISTACQSLKENSCIYIEGIYTHMADAASGNPAYTEEQFRRFM 188 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVV 236 +++ YK A+S+ L P+ H R G + G + P+ Sbjct: 189 EIVNKLVKAGYKIPLRHCANSAVFLKYPHMHLDAVRIGTLISGQYPVGDLPRPVELIDPF 248 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +II ++ AG+ + Y L D+ IAV +GY DG L + + + Sbjct: 249 RFKCKIISLKSLKAGDYLGYSRSYCLKEDAQIAVIPVGYMDGLGLNVGNKAEGFIDLLKI 308 Query: 297 --------------GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 + I+ + P+ GK+ M M M +I L + +GD ++I Sbjct: 309 LLKNIFFYYDLGRFKLQVKIRDSLYPVRGKVFMQMAMIEIPAGLDLSIGDEVEI 362 >gi|208779130|ref|ZP_03246476.1| alanine racemase [Francisella novicida FTG] gi|208744930|gb|EDZ91228.1| alanine racemase [Francisella novicida FTG] Length = 365 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 146/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I + L+NN + G+A+ VK NAYG G E I ++ V F V +V E Sbjct: 4 LEISVQTLRNNITIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + + ++I+ I + + + Sbjct: 63 FRVLDVVEKPVMIFGVIEYNYIDRILSKNIRISIQDYNDIEKLEKFAKYYNKKPFVHVNI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|237755608|ref|ZP_04584223.1| alanine racemase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692235|gb|EEP61228.1| alanine racemase [Sulfurihydrogenibium yellowstonense SS-5] Length = 311 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 27/327 (8%) Query: 48 IAPALYNAG-VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV 106 ++ L ++ F V + EG +LR I +L G+ + +I+ NLIPVIS Sbjct: 1 MSKYLQELDFIEYFCVATPLEGKELRENGIFKNILILGGVLKEETEILNQYNLIPVISDF 60 Query: 107 PQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 QL + L+ DTG RLG L+ K ++ +++HL+ Sbjct: 61 NQLEV----ARKLKNRKIHLKFDTGMRRLGFYLENVEKIKPL---LKEFEIEGVLTHLSS 113 Query: 167 ADDPSSHVNSVQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 AD Q++ F+ +++ K + +S+G++ ++ + R G+++YG Sbjct: 114 ADTDR-EYTINQIKEFKEILNLLDVKPKYIHVQNSAGVVYECDF-CNVIRVGLAMYGEKP 171 Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 + ++ V++ +++II I+ G+ VSY G + +A+ GYADG P +LS Sbjct: 172 FEDYPIELKQVMSVKSKIISIKDVKTGDRVSYNGSFVAKKPMKVAIVPFGYADGLPRSLS 231 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD---- 340 + G PILGKITMDMT+ D+++ +I +GD + I G Sbjct: 232 NRWFF-----------LVNGKEAPILGKITMDMTIVDVSEIENINIGDEVVIIGESGDKR 280 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAK 367 I D+A GT +Y+++ I R + Sbjct: 281 ITFGDIANIVGTISYEIMCGISKRVVR 307 >gi|118587123|ref|ZP_01544552.1| alanine racemase [Oenococcus oeni ATCC BAA-1163] gi|118432402|gb|EAV39139.1| alanine racemase [Oenococcus oeni ATCC BAA-1163] Length = 371 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 83/378 (21%), Positives = 140/378 (37%), Gaps = 28/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R++ ++L N +SG VK NAYG G +++ GV V+ Sbjct: 6 HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EG+ +R I +L I I + + +SS+ L K++ Sbjct: 66 VLDEGIAIRQAGINDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEK-LS 124 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181 L VDTG NR+G+ ++ L + S I +H A +D+P H Q R Sbjct: 125 VNLAVDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNR 184 Query: 182 FRTLISH-YKGIEASLASSSGILLGPNY---HFQLTRPGISLYGGTDKINKSHPMQ---T 234 + LI + +S + + R G +YG P+ Sbjct: 185 WYELIDGLIMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSEGVLGPIDKLKP 244 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V ++ + ++K AGE +SYG + +RD+ I IGY DG+ Sbjct: 245 VFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQL------ 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 I G +G+I MD M + +G + + G + L D+ S Sbjct: 299 ------LIDGQKCRQVGQIAMDQMMVVLPHEYP--IGTEVTLIGKSGKYENTLYDLHKHS 350 Query: 351 GTTNYDLLVRIGTRYAKF 368 G + + V R + Sbjct: 351 GVPPWKITVAFSDRLKRV 368 >gi|226226855|ref|YP_002760961.1| alanine racemase [Gemmatimonas aurantiaca T-27] gi|226090046|dbj|BAH38491.1| alanine racemase [Gemmatimonas aurantiaca T-27] Length = 403 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 142/405 (35%), Gaps = 56/405 (13%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY------- 53 M + L +D +AL++N + + +VK ++YGLG + AL Sbjct: 1 MTRQDRAWLDVDGSALRHNLAVLRQHA-RVPLLPMVKADSYGLGAIGVCRALGVPFAEGS 59 Query: 54 --------NAGVQ---DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV 102 AG + S++E LR + RI + + ++ P Sbjct: 60 VHAPTSTGTAGADAPWGVGIASLDEAEALRDAGCEGRILCATPLLARELPRALALSVRPA 119 Query: 103 ISSVPQLTFY-------------SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNS 149 + L + + ++C PY L +DTG R G Sbjct: 120 LHRAEDLVAWQALSAARGVAHGVAHGVACDAVAPYHLSIDTGMARAGARWDTVARLRDAV 179 Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209 + +H AD+ Q RF ++ + + + G Sbjct: 180 LA---VPPEGVFTHFHSADESL-PSRDEQDARFADALTVLRDVLPAGILEHRDNSGGIAS 235 Query: 210 FQLTRPGISLY----GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265 PG + ++ V AR++ +R L GE VSYG Sbjct: 236 RTTGSPGQLARPGIALYAGMFSAELGLRQVAHLRARVVDVRDVLPGESVSYGATWTAEGT 295 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 IA + GYADGY LS + G+ I G P++G++TMDMTM D++ Sbjct: 296 HRIATLSAGYADGYRRHLSNV-----------GEVLIHGTRCPVVGRVTMDMTMVDVSAV 344 Query: 326 LSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYA 366 GD + G D + + VA +G + Y+LLV + R Sbjct: 345 R-CAPGDVATMLGADGSQVLTAEAVAGRAGVSPYELLVGLCLRVP 388 >gi|116490276|ref|YP_809820.1| alanine racemase [Oenococcus oeni PSU-1] gi|290889662|ref|ZP_06552751.1| hypothetical protein AWRIB429_0141 [Oenococcus oeni AWRIB429] gi|116091001|gb|ABJ56155.1| alanine racemase [Oenococcus oeni PSU-1] gi|290480659|gb|EFD89294.1| hypothetical protein AWRIB429_0141 [Oenococcus oeni AWRIB429] Length = 371 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 83/377 (22%), Positives = 140/377 (37%), Gaps = 28/377 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R++ ++L N +SG VK NAYG G +++ GV V+ Sbjct: 6 HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVS 65 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EG+ +R I +L I I + + +SS+ L K++ Sbjct: 66 VLDEGIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEK-LS 124 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181 L VDTG NR+G+ ++ L + S I +H A +D+P H Q R Sbjct: 125 VNLAVDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNR 184 Query: 182 FRTLISH-YKGIEASLASSSGILLGPNY---HFQLTRPGISLYGGTDKINKSHPMQ---T 234 + LI + +S + + R G +YG P+ Sbjct: 185 WYELIDGLIMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSEGVLGPIDKLKP 244 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V ++ + ++K AGE +SYG + +RD+ I IGY DG+ Sbjct: 245 VFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQL------ 298 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 I G +G+I MD M + +G + + G + L D+ S Sbjct: 299 ------LIDGQKCRQVGQIAMDQMMVALPHEYP--IGTEVTLIGKSGKYENTLYDLHKHS 350 Query: 351 GTTNYDLLVRIGTRYAK 367 G + + V R + Sbjct: 351 GVPPWKITVAFSDRLKR 367 >gi|241668785|ref|ZP_04756363.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877316|ref|ZP_05250026.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843337|gb|EET21751.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 365 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 150/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E+I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYVGNAKICFPVKANAYGHGIEEIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ T + + + E+++ + + + + V Sbjct: 63 FRVTAITKKPVLVFGVIYYEYLERMVSENIRVSIQDYDDIEKLEQIAKELNKKIYVHINV 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ + ++N K L + SHLACAD+ N+ Q +RF ++ + Sbjct: 123 NTGMNRMGVCYNDVCRTIKRAYNSKWVVLEGVYSHLACADNRDHPTNTKQKKRFSEIVEY 182 Query: 189 ----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 + I L++S G L + + RPGI +YG + ++ + ++ Sbjct: 183 AKELSQDIICHLSNSYGFLGDKEICYDMVRPGILIYGFLPEFYVERSIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I + G+ V Y + +AV IGY DG+P L G Sbjct: 243 VVKIIELEEGDGVGYSMIYRGFDGEKVAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + +++VGD +++ +A T YD Sbjct: 292 IDNVMYPMAGRMSMDGLTVSLGHNEHNVKVGDVVELISDIPRNRNSAFLMAKQVNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|188501472|gb|ACD54604.1| alanine racemase-like protein [Adineta vaga] Length = 379 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 30/380 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66 ++IDL A++ N ++ + + +VK +AYG+G +KI + V Sbjct: 1 MRIDLNAMRCNLEQFCSIVASTTKMMMMVKASAYGVGIKKIGKWAEKTRLIDYLAVVYTA 60 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123 EGV+LR I V+ I KI + NL VI S+ L + Sbjct: 61 EGVELRKANIHLPIMVIN-IDKEDFKICQEYNLELVIYSISLLQQLMIWLEKNTQICSFP 119 Query: 124 -YALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++++TG NRLGL + E + +L S+ A D + Q Sbjct: 120 SIHVKINTGMNRLGLDIDEIPAFLNILFEYTRCRLMVKSIYTHVAASDDPQEDQYTAEQT 179 Query: 180 ERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQ 233 + + + + + +S GIL PN HF + R G LYG + + Sbjct: 180 RAYLSSVHILETGLGYTVLKHMCNSMGILRHPNLHFDMVRVGGGLYGAAECFLPYMSTLL 239 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ + + +R + Y + ++ RDS I + +GYADG L Sbjct: 240 PAISMMSTVTQVRHVKKDSTIGYNRRGRVNRDSFIGIIRLGYADGLRRQLGNGH------ 293 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPDIKLDDVALA 349 G +I VP +G I MD M D+TD + ++IFG ++++A Sbjct: 294 ----GHVWIHDCQVPFIGSICMDFAMIDLTDVPVDNKYELENESVEIFGSHNNIEEIARC 349 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 S T +D + IG R + Y Sbjct: 350 SDTIVFDFISTIGKRVKRVY 369 >gi|238927300|ref|ZP_04659060.1| possible alanine racemase [Selenomonas flueggei ATCC 43531] gi|238884887|gb|EEQ48525.1| possible alanine racemase [Selenomonas flueggei ATCC 43531] Length = 283 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 21/293 (7%) Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALD 144 + P + + D ++ + + + S+ G + L ++TG R+G+ ++A + Sbjct: 1 MEPESAREVVDGDITQTVCRMDLVEALSQEAVRQGKTVKVHLTIETGMGRIGVHPKDAAE 60 Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA-----SS 199 +L I SH A AD P Q++ F+ + + S Sbjct: 61 TAKKIAALPNVELEGIFSHFALADIPDKTFTKQQVKLFKDACDAIEAAGIHIPIKHIAES 120 Query: 200 SGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--QTVVTAEARIILIRKALAGELVSYG 257 + IL P+ HF + R GI YG + P+ + + ARI+ I+ GE V YG Sbjct: 121 AAILEIPDVHFDMVRAGIIQYGLWPSDEVTRPIDLRPCMKFCARIVYIKTIQPGESVGYG 180 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 + R++ IA +GYADGY + GG + G PI G++ MD Sbjct: 181 RKFIAERETRIATLPVGYADGYIRA------------YAGGSVEVCGKRAPIAGRVCMDQ 228 Query: 318 TMFDITDSLSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M D+TD ++GD +FG D + D++A + T NY+++ + R + Y Sbjct: 229 FMIDVTDIPEAKLGDVCTLFGSDSLTADEIAGWANTINYEVVCLVSERVPRVY 281 >gi|187918034|ref|YP_001883597.1| alanine racemase [Borrelia hermsii DAH] gi|119860882|gb|AAX16677.1| alanine racemase [Borrelia hermsii DAH] Length = 366 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 25/379 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ + I+L L +N S+ A +K +AYG G + L GV F Sbjct: 1 MTKHK--EIIINLQNLNHNLTSIKNHIQKRELVATLKSDAYGHGLIQTFKFLKEKGVNYF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119 + +++ +KL+ I + K + N+ P ++ L+ + Sbjct: 59 GLFWIDDALKLKKIDKNVNILLYINTDKNAIKNLVKFNITPFVADSQYLSLIEQECRKQN 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VD G NR G+ +++AL+ N K + I +HL ++ + + Q+ Sbjct: 119 KKIKAHLKVDVGMNRYGIKIEDALNLAIQIQNSKSIEFEGICTHLPTTEN--TKITQTQI 176 Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPNY----HFQLTRPGISLYGGTDKINKSHPM- 232 E+F I+ K I +S NY F + RPG+ LYG N S+ Sbjct: 177 EKFVYFINKLKSKNINPKFIHASNSEHIANYKISEKFNMVRPGLILYGYHPNPNISNNNL 236 Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + V+ ++II ++ GE +SY G D I + +GY DG P S Sbjct: 237 QLKPVLNLYSKIIFLKNIKKGEQISYSGLFTAKEDMQIGLIPVGYFDGIPQNTSN----- 291 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 I+ I GKI M++++ +I L I +G+ ++I + LD ++ S Sbjct: 292 ------NFYCIIRDRKCFIKGKICMNISIIEIPKDLKINIGEKVEIISERLSLDILSKES 345 Query: 351 GTTNYDLLVRIGTRYAKFY 369 G + Y++L IG K Y Sbjct: 346 GISKYEILCSIGKHEKKKY 364 >gi|54113967|gb|AAV29617.1| NT02FT0827 [synthetic construct] Length = 365 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + D +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEDEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIVR 362 >gi|134302328|ref|YP_001122297.1| alanine racemase [Francisella tularensis subsp. tularensis WY96-3418] gi|172044165|sp|A4IZ25|ALR_FRATW RecName: Full=Alanine racemase gi|134050105|gb|ABO47176.1| alanine racemase [Francisella tularensis subsp. tularensis WY96-3418] Length = 365 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 144/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDSLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|167624749|ref|YP_001675043.1| alanine racemase [Shewanella halifaxensis HAW-EB4] gi|167354771|gb|ABZ77384.1| alanine racemase [Shewanella halifaxensis HAW-EB4] Length = 406 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 73/376 (19%), Positives = 135/376 (35%), Gaps = 28/376 (7%) Query: 8 RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+++LT +N + N + A++K +AYG G + P + + VTS E Sbjct: 43 WLEVNLTQFDSNIKELKNHIQSNVKVCAIMKADAYGNGIAGLMPTVLANNIPCIGVTSNE 102 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E +R + + + + ++ + Q T + Sbjct: 103 EIRIVRDAGFRGSLIRVRSASIAEISDTLQYDVEEFVGDANQATLLSAMAAKLDKPLKVH 162 Query: 126 LQVDTG---FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177 L +++G N + +S Q L+ + I++H D + Sbjct: 163 LVLNSGGMGRNGVDVSTQSGLNEAVQIATTADLDVVGIMTHFPSYDRDDVLVKSKSFYNS 222 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 L + +S L P HF + RPG LYG + ++VT Sbjct: 223 ALNIIEESGLKRDSVTIHSGNSYVALNVPEAHFDMVRPGGVLYGDQPTNPE---FPSIVT 279 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + RI + G V Y KL R+SL+A +GY+D +P + Sbjct: 280 FKTRIASLVDLPKGATVGYDSTIKLERESLLANLPVGYSDSFPRKMGNTAD--------- 330 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 + G ++G I+M+ +M D+TD ++ GD + +FG I + + Sbjct: 331 --VLVNGQRAKVMGVISMNTSMIDVTDLSGVKEGDEVVLFGYQGKESILAPEFEKNADVI 388 Query: 354 NYDLLVRIGTRYAKFY 369 ++ + G + Y Sbjct: 389 FPEIYTQWGQTNPRIY 404 >gi|85708650|ref|ZP_01039716.1| alanine racemase [Erythrobacter sp. NAP1] gi|85690184|gb|EAQ30187.1| alanine racemase [Erythrobacter sp. NAP1] Length = 355 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 28/364 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L++D ALK+NW ++ +SG+A A VK + YGLG P L AG ++FFV + +E Sbjct: 18 LRVDTEALKDNWRMLDRMSGDAGAGAAVKADCYGLGVSICVPTLVEAGCRNFFVANWDEA 77 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +L Y +I VL G QE + I + + G L + Sbjct: 78 EELSHYVAPEQIAVLQGPVTPQEADFAKASGILPVINSIHQAKLWTKAGGGT---CHLMI 134 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG NRLG++ + D + + + +SHLA AD+ +N+ QL +R + Sbjct: 135 DTGINRLGIAPSDISDPAIAALDIDV-----AMSHLASADE-DGPMNARQLALYRECLGS 188 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S+GI LG +Y F LTRPG++LYGG + ++ V +A ++ R Sbjct: 189 VRHKRESLANSAGIALGMDYAFDLTRPGLALYGGIARPELEGRIKQVAYIKACVLQTRSL 248 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 AG+ V Y G+ + + +IGYADG+ G +G +P Sbjct: 249 KAGDAVGYNGEFVASEPMRVGTISIGYADGFLRA-----------RGPGEAFMFEGKRLP 297 Query: 309 ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD--DVALASGTTNYDLLVRIGTRYA 366 +LGK++MDM + D+ + ++ GD++ D+ D + A S + Y+LL +G R Sbjct: 298 LLGKVSMDMVVVDLAHAPEVKEGDWL-----DVPFDLLNAARQSSVSQYELLTVLGRRL- 351 Query: 367 KFYT 370 + ++ Sbjct: 352 RHWS 355 >gi|33593228|ref|NP_880872.1| alanine racemase, catabolic [Bordetella pertussis Tohama I] gi|33563603|emb|CAE42504.1| alanine racemase, catabolic [Bordetella pertussis Tohama I] gi|332382637|gb|AEE67484.1| alanine racemase, catabolic [Bordetella pertussis CS] Length = 387 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 130/367 (35%), Gaps = 24/367 (6%) Query: 11 IDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID A+ +N + G R A VK +AYG G + P L V + Sbjct: 19 IDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRA--ADGIAVRHLH 76 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + R I V G+ +E + + ++ + + P+ Sbjct: 77 EAHQCRRVGWSGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYSCAPWIW 136 Query: 127 QVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184 G R GL E + + HL A+ S + F Sbjct: 137 LRYIGATRLGGLDASEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDLEREHADFEA 196 Query: 185 LISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240 I G ++ S++ +L RPG++LYG + + ++ +T + Sbjct: 197 CIRGLPGPVSTCNSAAACVLPTMAARTDWVRPGLALYGVSPIPGRAGRDLGLRPAMTLRS 256 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + + AG V YG + + + GY DGYP H+P Sbjct: 257 TLCATQNLPAGASVGYGCTFVADQPMALGLVRCGYGDGYP---------HNPRASF--PV 305 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLV 359 + G + +G+I+MD+ D+ + G + ++G P + ++ +A A+GT +LL Sbjct: 306 QVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHAAGTIAAELLT 365 Query: 360 RIGTRYA 366 + R Sbjct: 366 GLTARVP 372 >gi|269120416|ref|YP_003308593.1| alanine racemase [Sebaldella termitidis ATCC 33386] gi|268614294|gb|ACZ08662.1| alanine racemase [Sebaldella termitidis ATCC 33386] Length = 367 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 158/356 (44%), Gaps = 28/356 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +KI+ + N + ++ VVKD+AYGLG E I P LYN G + + V EE Sbjct: 5 VKINRENIIKNLKRIRNMTP---LICVVKDDAYGLGIENILPVLYNEGERYYAVAFFEEA 61 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQ 127 ++R I +L + + + S+ Q + L ++ Sbjct: 62 SEIRKMYEDVNIIILNYTEEEKLHEAVKDKIEVSVFSMLQLHRYIEILGDKIPELGIHIK 121 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +TG NRLG ++E + ++ Q+ + SH++ +++ + QLE+F + + Sbjct: 122 FNTGMNRLGFDIEETPEL-CRIISENNLQVKSVFSHISNSENIEN--TEKQLEKFENITN 178 Query: 188 ------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 G AS + Y+F +R G+++YG ++K ++ ++ E++ Sbjct: 179 LLKKHEINYGFRHISASPALFQYTGKYNFDFSRVGMAIYGLEP-LSKDTGLEKCISIESK 237 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 II I+ GE +SYG +L +D+ + + +GYA G + + G Sbjct: 238 IINIKNVKKGEYISYGENNRLEKDTAVGIIPMGYAQGIQMQIENK----------GAYAL 287 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTT 353 I G P++G++ MDM + DI+ ++ + D + + G +I L D++ + T Sbjct: 288 INGKKAPVIGEVCMDMLLLDISGIENVNLLDSVVLLGKSGNEEITLRDISKWTSTI 343 >gi|254226880|ref|ZP_04920449.1| alanine racemase [Vibrio cholerae V51] gi|125620597|gb|EAZ48962.1| alanine racemase [Vibrio cholerae V51] Length = 411 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 141/373 (37%), Gaps = 28/373 (7%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L ++N + S N + A++K +AYG G + P + G+ V S Sbjct: 51 WLEISLGQFQSNIEQFKSHMSANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASNA 110 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + + + + D N+ +I + Q ++L G + Sbjct: 111 EARAVRESGFKGELIRVRSASLSEMSAVLDLNIEELIGTHQQALDLAELAKQSGKTIKVH 170 Query: 126 LQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + ++ G N + ++ + + + + I++H + Q + Sbjct: 171 IALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNYNADEVRAKLAQFKES 230 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 T + ++ +A+S L P + RPG L+G + ++V+ Sbjct: 231 STWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPE---YPSIVS 287 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + R+ + G V Y +RDS++A +GY+DGYP + Sbjct: 288 FKTRVSSLHHVPKGSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN-----------K 336 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 + I G ++G +M+ T+ D+T+ + G + +FG I + ++ + Sbjct: 337 AEVLINGQRAKVVGVTSMNTTVVDVTEIKGVIPGQEVVLFGQQQKQSIAVSEMENNAELI 396 Query: 354 NYDLLVRIGTRYA 366 +L GT Sbjct: 397 FPELYTLWGTSNP 409 >gi|86138387|ref|ZP_01056961.1| alanine racemase [Roseobacter sp. MED193] gi|85824912|gb|EAQ45113.1| alanine racemase [Roseobacter sp. MED193] Length = 382 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 146/377 (38%), Gaps = 27/377 (7%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 NE +I + N +++ L R AV+K +AYG G E + PAL GV+ + Sbjct: 6 NESAWCEISPAQISQNLRHTLDRLPAQTRLCAVIKADAYGHGIENVVPALLAQGVRHIGI 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ E +R I L P + + N+ +I SV + + Sbjct: 66 SANSEARAVRAAGFTGAILRLRTATPEEVEDALSYNVQELIGSVGGMQAILNQLGARGLP 125 Query: 123 PYALQVD---TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA--CADDPSSHVNSV 177 P L ++ + + LS Q+ ++ + +H D+ + ++ Sbjct: 126 PVHLSLNAGGMSRDGVELSTQQGRTDCGRILELGAERIVGLCTHFPSNSFDELADNIARF 185 Query: 178 QL---ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 Q F + I S+ + G + + R G L+G + P Sbjct: 186 QQDLAWVFANSSLRREDILTHAGSTLTLAAGQDPKVDMMRCGAILFGIAGAGPEFRP--- 242 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + ++R+I + G V Y L D L+A A+GYA+GY +S Sbjct: 243 AMQLKSRVISLGTYPKGSTVGYDRTCVLPDDRLLASVAMGYANGYSRQMS---------- 292 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 G + I+G + P++G I+M+ + D+T+ + +GD + FG +I + S Sbjct: 293 -KGAQVLIRGQICPVMGAISMNTLVVDVTEVPGVAIGDEVVAFGSQGGCEIGAAAIEGGS 351 Query: 351 GTTNYDLLVRIGTRYAK 367 GT DL G R + Sbjct: 352 GTILADLFSDWGQRNPR 368 >gi|56707702|ref|YP_169598.1| alanine racemase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670173|ref|YP_666730.1| alanine racemase [Francisella tularensis subsp. tularensis FSC198] gi|254370208|ref|ZP_04986214.1| alanine racemase [Francisella tularensis subsp. tularensis FSC033] gi|81820797|sp|Q5NH94|ALR_FRATT RecName: Full=Alanine racemase gi|123359566|sp|Q14IP6|ALR_FRAT1 RecName: Full=Alanine racemase gi|56604194|emb|CAG45206.1| alanine racemase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320506|emb|CAL08589.1| alanine racemase [Francisella tularensis subsp. tularensis FSC198] gi|151568452|gb|EDN34106.1| alanine racemase [Francisella tularensis subsp. tularensis FSC033] gi|282158869|gb|ADA78260.1| alanine racemase [Francisella tularensis subsp. tularensis NE061598] Length = 365 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + D +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEDEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|167626353|ref|YP_001676853.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|226711043|sp|B0TYB0|ALR_FRAP2 RecName: Full=Alanine racemase gi|167596354|gb|ABZ86352.1| Alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 365 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 149/371 (40%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L NN + GNA+ VK NAYG G E+I ++ V F V + E Sbjct: 4 LKISKQTLTNNIKIIREYVGNAKICFPVKANAYGHGIEEIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ T + + + E+++ + + + + V Sbjct: 63 FRVTAITKKPVLVFGVIYYEYLERMVSENIRVSIQDYDDIEKLEQIAKELNKKIYVHINV 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ + ++N K L + SHLACAD+ N+ Q +RF ++ + Sbjct: 123 NTGMNRMGVCYNDVCRTIKRAYNSKWIILEGVYSHLACADNRDHPTNAKQKKRFSEIVEY 182 Query: 189 ----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 + I L++S G L + + RPGI +YG + ++ + ++ Sbjct: 183 AKELSQDIICHLSNSYGFLGDKEICYDMVRPGILIYGFLPEFYVERSIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I + G+ V Y + +AV IGY DG+P L G Sbjct: 243 VVKIIELEEGDGVGYSMIYRGFDGEKVAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + +++VGD +++ +A T YD Sbjct: 292 IDNVMYPMAGRMSMDGLTVSLGHNEHNVKVGDVVELISDIPRNRNSAFLMAKQVNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|320451536|ref|YP_004203632.1| alanine racemase [Thermus scotoductus SA-01] gi|320151705|gb|ADW23083.1| alanine racemase [Thermus scotoductus SA-01] Length = 366 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 27/368 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++DL AL+ NW + A + V+K AYG G +A L+ G + V +V Sbjct: 11 RAWIEVDLKALEANWLLLKAKARG-EVIPVLKAEAYGHGALPLARFLFQKGARWVAVATV 69 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EG LR + I +L +HP + + + NL+P +S++ + G++ Sbjct: 70 SEGRTLREGGVEGEILLLGSLHPLEAEEVLRLNLLPTLSTLEAAQALAGRARALGLTPRA 129 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG NR+G ++A D + + ++D VQ RF+ Sbjct: 130 HLKVDTGMNRVGFPWEKAKDALLAVEALGIRVEGVYTHLATASED--EAFVEVQRSRFQR 187 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +S LL + R G++LYG ++ ++ AR L Sbjct: 188 VREALGEGYFYHLENSYGLLLHG--GENVRVGLALYGLIP----GFSLKPILRLLARPTL 241 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +++ G+ V YGG+ + +GYADG P F+ G +G Sbjct: 242 VKQLGPGDRVGYGGEYVARGGEWLLTLPVGYADGLPRG---------AVRFVKGP---EG 289 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD---DVALASGTTNYDLLVRI 361 + P+ G+I+MD T L +E +++ PD A A GT Y++ V + Sbjct: 290 GLYPVAGRISMDQTTVLSPGPLPLEA--VLEVLSPDFGPTGLCAWAEARGTIPYEVAVHL 347 Query: 362 GTRYAKFY 369 R+ + Y Sbjct: 348 SRRFPRVY 355 >gi|325291380|ref|YP_004267561.1| Alanine racemase [Syntrophobotulus glycolicus DSM 8271] gi|324966781|gb|ADY57560.1| Alanine racemase [Syntrophobotulus glycolicus DSM 8271] Length = 407 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 144/353 (40%), Gaps = 24/353 (6%) Query: 7 LRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L +++DL A+ +N+ + LS R AVVK +AYGLG +A AL G ++F VT+V Sbjct: 4 LWIEVDLDAVVHNYWEIQKKLSPGTRCLAVVKADAYGLGAVAVAQALQEEGCREFAVTTV 63 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124 EEG LR + I VL P + L + + Sbjct: 64 EEGAILRENGIEGMILVLGPTRPADWESAIRKELSLSLPEASWVPLLEEICAKHHAEINV 123 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+++TG R GL + + ++ +H A A + Q +F + Sbjct: 124 HLKIETGMGRTGLMVGILPQLAGFLQTARFVKVEGAFTHFARAAQRDNAYTKRQYGKFLS 183 Query: 185 LISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDK--INKSHPMQTVVT 237 +G+ + +S+ L P H + R G L G S ++ Sbjct: 184 ACERLEGLGINIPIKHVCNSAAFLDFPEMHHEFVRVGTLLLGHLPSQFFAGSIELKDPWK 243 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY-------PLTLSGLDSEH 290 A+ARI+ IR+ G V Y + +D+ +AV + GY DG+ P L+ L Sbjct: 244 AKARILYIREVPKGTFVGYQSLYRCKKDTRLAVISAGYTDGFGVEPRLVPQGLADLMKII 303 Query: 291 SPSVFLGGKGF-------IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 ++ G + + G V + GKI M +T+ DI + + GD +++ Sbjct: 304 IKNIAAYGGIYLGREKLTLNGRPVKVAGKIGMQLTVLDIG-AAECQAGDIVEV 355 >gi|169656659|ref|YP_001428845.2| alanine racemase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953541|ref|ZP_06558162.1| alanine racemase [Francisella tularensis subsp. holarctica URFT1] gi|295313145|ref|ZP_06803827.1| alanine racemase [Francisella tularensis subsp. holarctica URFT1] gi|189027647|sp|A7ND36|ALR_FRATF RecName: Full=Alanine racemase gi|164551727|gb|ABU61889.2| alanine racemase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 365 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 144/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEYIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNNRIIR 362 >gi|254369512|ref|ZP_04985523.1| hypothetical protein FTAG_01386 [Francisella tularensis subsp. holarctica FSC022] gi|157122466|gb|EDO66601.1| hypothetical protein FTAG_01386 [Francisella tularensis subsp. holarctica FSC022] Length = 365 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 143/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVTYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|89256641|ref|YP_514003.1| alanine racemase [Francisella tularensis subsp. holarctica LVS] gi|167011039|ref|ZP_02275970.1| alanine racemase [Francisella tularensis subsp. holarctica FSC200] gi|254367956|ref|ZP_04983976.1| alanine racemase [Francisella tularensis subsp. holarctica 257] gi|122500527|sp|Q2A2P9|ALR_FRATH RecName: Full=Alanine racemase gi|89144472|emb|CAJ79777.1| alanine racemase [Francisella tularensis subsp. holarctica LVS] gi|134253766|gb|EBA52860.1| alanine racemase [Francisella tularensis subsp. holarctica 257] Length = 365 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 144/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEYIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|115315060|ref|YP_763783.1| alanine racemase [Francisella tularensis subsp. holarctica OSU18] gi|122324934|sp|Q0BL88|ALR_FRATO RecName: Full=Alanine racemase gi|115129959|gb|ABI83146.1| alanine racemase [Francisella tularensis subsp. holarctica OSU18] Length = 365 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 143/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEYIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQINTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|187931921|ref|YP_001891906.1| alanine racemase [Francisella tularensis subsp. mediasiatica FSC147] gi|226711044|sp|B2SHB9|ALR_FRATM RecName: Full=Alanine racemase gi|187712830|gb|ACD31127.1| alanine racemase [Francisella tularensis subsp. mediasiatica FSC147] Length = 365 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 145/371 (39%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 LKI L+NN + GNA+ VK NAYG G E I ++ V F V + E Sbjct: 4 LKISKQTLRNNIKIIREYIGNAKMCFPVKANAYGHGIEDIVENTHDL-VDFFAVANSLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + EK+I + + + + + Sbjct: 63 FRVTAVAKNPVLVFGVIYYEYIEKMISENIRVSIQDYEDIEKLEQIAKELDKKVYAHINI 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G++ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVNYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVKF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++VGD +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVGDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|118497341|ref|YP_898391.1| alanine racemase [Francisella tularensis subsp. novicida U112] gi|195536029|ref|ZP_03079036.1| alanine racemase [Francisella tularensis subsp. novicida FTE] gi|226711045|sp|A0Q5X2|ALR_FRATN RecName: Full=Alanine racemase gi|118423247|gb|ABK89637.1| alanine racemase [Francisella novicida U112] gi|194372506|gb|EDX27217.1| alanine racemase [Francisella tularensis subsp. novicida FTE] Length = 365 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 144/371 (38%), Gaps = 24/371 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I L+NN + G+A+ VK NAYG G E I ++ V F V +V E Sbjct: 4 LEISAQTLRNNIRIIKEYVGSAKICFPVKANAYGHGLELIVEHSHDL-VDFFAVANVLEA 62 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++ + + + ++I+ + + + + Sbjct: 63 FRVLDVVEKPVMIFGVIEYNYIDRILSKNIRVSIQDYNDIEKLEKFAKYYNKKPFVHVNL 122 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 +TG NR+G+ +A ++ L + SHLACAD+ N Q RF +++ Sbjct: 123 NTGMNRMGVDYNDACRTIQRAYESDWLILEGVYSHLACADNRDHPTNIKQKNRFDSIVEF 182 Query: 189 YKG----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEAR 241 KG I L++S G L + + RPGI YG + ++ + ++ Sbjct: 183 TKGLSQDIICHLSNSYGFLGQKGICYDMVRPGILSYGFLPEFYVDRVIREIKPIARLLSK 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ I GE V Y + +AV IGY DG+P L G Sbjct: 243 VVKIITLQEGEGVGYSLIYRGFEGEQLAVIPIGYGDGFPRELGDR-----------GFVN 291 Query: 302 IKGYMVPILGKITMDMTMFDIT-DSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYD 356 I M P+ G+++MD + + ++V D +++ +A + T YD Sbjct: 292 INDVMYPMAGRMSMDGLTVSLGINEYDVKVSDTVELISAIPRNRNSAFSIAKQTNTIEYD 351 Query: 357 LLVRIGTRYAK 367 ++ + R + Sbjct: 352 IMSTLNDRIIR 362 >gi|206895841|ref|YP_002247535.1| alanine racemase [Coprothermobacter proteolyticus DSM 5265] gi|226711035|sp|B5Y9T8|ALR_COPPD RecName: Full=Alanine racemase gi|206738458|gb|ACI17536.1| alanine racemase [Coprothermobacter proteolyticus DSM 5265] Length = 348 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 140/366 (38%), Gaps = 29/366 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++ LKNN + + AVVKD+AYG + P L G+ F V ++ Sbjct: 5 WAEVSRMNLKNNVELIRQKLPDLEPIAVVKDDAYGHDAAVVVPELLKNGITKFAVVYAKD 64 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + L + + + + + + + + + S + + + L Sbjct: 65 ALMLSEFGAEWILVLDDPPLSN---MCSEYEKRGIRFCITDSKWLSDGL-LELPIKFHLF 120 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 VD G +R G+ E + D + ERFR ++S Sbjct: 121 VDVGMHREGVPWYETNTIREICKVVGNRLEGICSHLSNGLSDSQALATEE--ERFREVLS 178 Query: 188 -HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 +G+ L++S+ + + RPGISLYG ++ V++ +AR+I Sbjct: 179 IAPEGLMVHLSNSASLYNAKFPYATHFRPGISLYGYGYP-----GLKPVLSLKARVIHEH 233 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 GE +SYG + T + + +GY DGY LS S + Sbjct: 234 ILEPGEGLSYGWTWRATEPTHVVTVPVGYGDGYNRKLSNKAIAGSKAGN----------- 282 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIG 362 + +G +TMD TMF+ ++ VGD I + G D++A GT Y++L I Sbjct: 283 LQQIGTVTMDFTMFEAPK--NVTVGDEIVLMGEWEGGHFWADEMAQLVGTIPYEVLTSIN 340 Query: 363 TRYAKF 368 R + Sbjct: 341 PRVPRV 346 >gi|33596854|ref|NP_884497.1| alanine racemase, catabolic [Bordetella parapertussis 12822] gi|33573555|emb|CAE37547.1| alanine racemase, catabolic [Bordetella parapertussis] Length = 387 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 24/367 (6%) Query: 11 IDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID A+ +N + G R A VK +AYG G + P L V + Sbjct: 19 IDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRA--ADGIAVRHLH 76 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + R + I V G+ +E + + ++ + + P+ Sbjct: 77 EAHQCRRVGWRGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYACAPWVW 136 Query: 127 QVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184 G R GL E + + HL A+ S + F Sbjct: 137 LRYIGATRLGGLDAGEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDLEREHADFEA 196 Query: 185 LISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240 I G ++ S++ ++ RPG++LYG + + ++ +T + Sbjct: 197 CIRGLPGPVSTCNSAASCVMPTMAARTDWVRPGLALYGVSPIPGRVGRDLGLRPAMTLRS 256 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + + AG V YG + + + GY DGYP H+P Sbjct: 257 TLCATQNLPAGASVGYGCAFVADQPMALGLVRCGYGDGYP---------HNPRASF--PV 305 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLV 359 + G + +G+I+MD+ D+ + G + ++G P + ++ +A A+GT +LL Sbjct: 306 QVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHAAGTIAAELLT 365 Query: 360 RIGTRYA 366 + R Sbjct: 366 GLTARVP 372 >gi|85374046|ref|YP_458108.1| alanine racemase [Erythrobacter litoralis HTCC2594] gi|84787129|gb|ABC63311.1| alanine racemase [Erythrobacter litoralis HTCC2594] Length = 348 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 178/364 (48%), Gaps = 24/364 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 LRL ID AL+ NW +++ LSG AR A VK + YGLG + P L +AG +DFFV Sbjct: 8 RTLRLDIDREALEANWRALDRLSGKARAGAAVKADCYGLGVDTCVPVLRDAGARDFFVAH 67 Query: 65 VEE-GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 E R P+ + + + PV++S+ Q + P Sbjct: 68 WSEVADVARHVLPEQIAVLHGANTAEEAEYARSIGARPVVNSLHQANVWIDSGGG----P 123 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + VDTG +RLG++ E + ++ ++SHL+ AD+ + VN+ QLE FR Sbjct: 124 CHMMVDTGIHRLGIAPSEVAANVIRQLDVQV-----LMSHLSSADE-DTPVNAAQLEAFR 177 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 L E SLA+S+GI L ++ F LTRPG+SLYGG + + ++ V +A II Sbjct: 178 ALKGQLGAQELSLANSAGIGLNDDFAFDLTRPGLSLYGGVQRPELAEHIRQVAYPKAAII 237 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 + + AG+ V Y G+ + ++GYADG+ G + + Sbjct: 238 QVAELRAGDHVGYNGEFTAPDAMRVGTVSLGYADGFLRAWGGKGLAL----------YHE 287 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G +P+LGK++MDM + D+ + VG ++ + L + A+G + Y+LL +G Sbjct: 288 GRSLPLLGKVSMDMVVVDLAAEPDLSVGTWLDV---PYDLPRASEATGLSQYELLTILGQ 344 Query: 364 RYAK 367 R+A+ Sbjct: 345 RFAR 348 >gi|224532829|ref|ZP_03673444.1| alanine racemase [Borrelia burgdorferi WI91-23] gi|224533969|ref|ZP_03674553.1| alanine racemase [Borrelia burgdorferi CA-11.2a] gi|224512218|gb|EEF82604.1| alanine racemase [Borrelia burgdorferi WI91-23] gi|224512805|gb|EEF83172.1| alanine racemase [Borrelia burgdorferi CA-11.2a] Length = 372 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++ I+ GE Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG + Y Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370 >gi|188501452|gb|ACD54585.1| alanine racemase-like protein [Adineta vaga] Length = 404 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 150/380 (39%), Gaps = 30/380 (7%) Query: 9 LKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVTSVE 66 ++IDL A++ N ++ + + +VK +AYG+G +KI + V Sbjct: 26 MRIDLNAMRCNLEQFCSVVASTTKMMMIVKASAYGVGIKKIGKWAEKTRLIDYLAVVYTA 85 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP--- 123 EGV+LR I ++ I KI + NL VI S+ L + Sbjct: 86 EGVELRKANIHLPIMIIN-IDKEDFKICQEYNLELVIYSISLLQQLMIWLEKNTQICSFP 144 Query: 124 -YALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 ++++TG NRLGL + E + +L S+ A D + Q Sbjct: 145 SIHVKINTGMNRLGLDIDEIPVFLNILFKYTRCRLMVKSIYTHVAASDDPQEDQYTADQT 204 Query: 180 ERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQ 233 + + + + + +S GIL PN HF + R G LYG + + Sbjct: 205 RAYLSSVHILETGLGYTVLKHMCNSMGILRHPNLHFDMVRVGGGLYGAAECFLPYMSTLL 264 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 ++ + + +R + Y + ++ RDS I + +GYADG L Sbjct: 265 PAISMISTVTQVRHVKKDSTIGYNRRGRVNRDSFIGILRLGYADGLRRQLGNGH------ 318 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE----VGDYIQIFGPDIKLDDVALA 349 G +I V +G I MD M D+TD + ++IFG ++++A Sbjct: 319 ----GHVWIHDCRVSFIGSICMDFAMIDLTDVPIDNKYELENESVEIFGSHNNIEEIARC 374 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 S T +D + IG R + Y Sbjct: 375 SDTIVFDFISTIGKRVKRVY 394 >gi|15594505|ref|NP_212294.1| alanine racemase (alr) [Borrelia burgdorferi B31] gi|218249176|ref|YP_002374687.1| alanine racemase [Borrelia burgdorferi ZS7] gi|223889148|ref|ZP_03623737.1| alanine racemase [Borrelia burgdorferi 64b] gi|225549335|ref|ZP_03770308.1| alanine racemase [Borrelia burgdorferi 94a] gi|226321930|ref|ZP_03797455.1| alanine racemase [Borrelia burgdorferi Bol26] gi|6647402|sp|O51182|ALR_BORBU RecName: Full=Alanine racemase gi|226711027|sp|B7J192|ALR_BORBZ RecName: Full=Alanine racemase gi|2688050|gb|AAC66549.1| alanine racemase (alr) [Borrelia burgdorferi B31] gi|146743642|gb|ABQ43052.1| alanine racemase [Borrelia burgdorferi JD1] gi|146743644|gb|ABQ43053.1| alanine racemase [Borrelia burgdorferi] gi|218164364|gb|ACK74425.1| alanine racemase [Borrelia burgdorferi ZS7] gi|223885397|gb|EEF56498.1| alanine racemase [Borrelia burgdorferi 64b] gi|225370193|gb|EEG99633.1| alanine racemase [Borrelia burgdorferi 94a] gi|226232520|gb|EEH31274.1| alanine racemase [Borrelia burgdorferi Bol26] gi|312148518|gb|ADQ31177.1| alanine racemase [Borrelia burgdorferi JD1] Length = 372 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 150/357 (42%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG + Y Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370 >gi|119952958|ref|YP_945167.1| alanine racemase [Borrelia turicatae 91E135] gi|119861729|gb|AAX17497.1| alanine racemase [Borrelia turicatae 91E135] Length = 366 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 159/379 (41%), Gaps = 25/379 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N+ + I+L L+ N ++ A +K +AYG G + L G+ F Sbjct: 1 MIKNK--EIIINLKNLEYNLTAIKNHIQKRELVATLKADAYGHGLIQTFKFLKEKGINYF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119 + ++E +K++ +A + + K + ++ P ++ L+ + Sbjct: 59 GIFWIDEALKIKKIDKRANVLLYINTDKSAIKNLVKFDITPFVADSQYLSLIEQECRKQN 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VD G NR G+ ++ AL+ N KL + + +HL ++ + Q+ Sbjct: 119 KKIKVHLKVDVGMNRYGIKIENALNLAMQIQNSKLVEFEGVCTHLPTTENR--KITQAQI 176 Query: 180 ERFRTLISH--YKGIEASLASSSGILLGPNYH----FQLTRPGISLYGGTDKINKSHPMQ 233 E+F I+ K I+ +S NY F + RPG+ LYG N + Sbjct: 177 EKFVHFINELKTKNIKPKFIHASNSEHITNYPISEKFNMVRPGLILYGYHPNSNSLNNNL 236 Query: 234 T---VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 V++ ++II ++K E +SY G D I + +GY DG P S Sbjct: 237 QLKPVLSLYSKIIFLKKIKKDEQISYSGLFTAKEDMQIGLLPVGYFDGIPQNTSN----- 291 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 I+ I GKI M++++ +I L I +G+ ++I + LD ++ S Sbjct: 292 ------NFYCIIRDKKCFIRGKICMNISIIEIPKDLKINIGEKVEITSERLSLDILSKES 345 Query: 351 GTTNYDLLVRIGTRYAKFY 369 G + Y++L IG K Y Sbjct: 346 GMSKYEILCSIGKHEKKKY 364 >gi|323341783|ref|ZP_08082016.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464208|gb|EFY09401.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 375 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 77/372 (20%), Positives = 154/372 (41%), Gaps = 25/372 (6%) Query: 11 IDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +D + NN + + + AV+K N YG G ++A + V ++E+ Sbjct: 9 VDEQRILNNTLKLREIIKPETKIIAVIKANGYGCGLVEVAHTCEKMKIDVLAVLNIEQAR 68 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYALQV 128 LR + I +L K + + +L+ VI + ++ + GV ++V Sbjct: 69 DLRKHGITTPILLLGATLESNFKYLIEYDLMQVIINHDYALKLNQFGLDHGVKVKTHVKV 128 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 DTG +RLG+ + + + ++ + + + + +QL+R++ +I Sbjct: 129 DTGLHRLGMEDYDEIKSCYGLEGLEVCGIYSHFVEAQSYEGDAVAFSMLQLDRYKAVIDK 188 Query: 189 -----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAE 239 + +S IL + F R G+ ++G +++ + + V++ E Sbjct: 189 LRHDGIDPKMTHIQNSPSILNFGDLGFDAVRCGMIMFGLYHPSQLEMSLNDGYEPVLSFE 248 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +R+ ++R+ GE V YG + D ++A + GY DG +LS GG Sbjct: 249 SRVCMVRELKKGEFVGYGRTFQAEDDMMLATVSAGYCDGVMKSLS----------LNGGH 298 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-IKLDD-VALASGTTNYDL 357 I + PI+G I M M D+T + D + +FG + + D + + + N +L Sbjct: 299 VVINDTLCPIVGDIAMSQFMVDVTGVP-CNLEDRVILFGHEKQTIYDYIGITGQSIN-EL 356 Query: 358 LVRIGTRYAKFY 369 + I + Y Sbjct: 357 ISHILYDIPRIY 368 >gi|323342193|ref|ZP_08082425.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463305|gb|EFY08499.1| alanine racemase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 356 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 80/364 (21%), Positives = 149/364 (40%), Gaps = 29/364 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 I+L L N + + ++G + VVK NAYG G + + + + V+S++E Sbjct: 8 ATINLDNLSYNINKIQEVTGKS-LFGVVKANAYGHGDVECSRIMIEENLPFICVSSIDEA 66 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +L I + + P KII + I ++P + ++ ++ + ++ L++ Sbjct: 67 QRLVHKGINYDILIFSYVDP---KIIAEQGKEHFIYTIPSIQWFREVTALNLNLRMHLEI 123 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS- 187 + G NR+G+ + ++ L I +HL ++ QL RF +I+ Sbjct: 124 NVGMNRIGIKNDKEIEEIL----SSDVPLEGIYTHLPSPENLEKG--KEQLTRFENIINA 177 Query: 188 -HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + ++ L+ N R G+++YG I P V++ ++I I Sbjct: 178 SERNFKWIHVGNAPVSLIKDNTLINGFRMGLAVYGYRVDIPSLKP---VLSLHSKICHID 234 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + GE + Y + + IGYAD + +IKG Sbjct: 235 RVNPGESIGYDYTYLVEKKEYFGTMPIGYADCF------------DVRNNLVPVYIKGKP 282 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 I+GKI MD TM I S+ +GD +++ GP ++ +G + Y L + R Sbjct: 283 YSIVGKICMDQTMIRI--DESVYLGDEVELIGPHRTCVEIESITGISKYIQLSTLSERIT 340 Query: 367 KFYT 370 + YT Sbjct: 341 RHYT 344 >gi|33600629|ref|NP_888189.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50] gi|33568229|emb|CAE32141.1| alanine racemase, catabolic [Bordetella bronchiseptica RB50] Length = 387 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 71/367 (19%), Positives = 130/367 (35%), Gaps = 24/367 (6%) Query: 11 IDLTALKNNWHSMNALSG----NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID A+ +N + G R A VK +AYG G + P L V + Sbjct: 19 IDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRA--ADGIAVRHLH 76 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + R + I V G+ +E + + ++ + + P+ Sbjct: 77 EAHQCRRVGWRGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYACAPWIW 136 Query: 127 QVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHL-ACADDPSSHVNSVQLERFRT 184 G R GL E + + HL A+ S + F Sbjct: 137 LRYIGATRLGGLDAGEYRRAYARCRELQQHGALRGVGHLNHYANAASVGDLEREHADFEA 196 Query: 185 LISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEA 240 I G ++ S++ ++ RPG++LYG + + ++ +T + Sbjct: 197 CIRGLPGPVSTCNSAASCVMPTMAARTDWVRPGLALYGVSPIPGRVGRDLGLRPAMTLRS 256 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + + AG V YG + + + GY DGYP H+P Sbjct: 257 TLCATQNLPAGASVGYGCAFVADQPMALGLVRCGYGDGYP---------HNPRASF--PV 305 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALASGTTNYDLLV 359 + G + +G+I+MD+ D+ + G + ++G P + ++ +A A+ T +LL Sbjct: 306 QVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHAADTIAAELLT 365 Query: 360 RIGTRYA 366 + R Sbjct: 366 GLTARVP 372 >gi|223670745|dbj|BAH22617.1| alanine racemase [Marsupenaeus japonicus] Length = 421 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 146/380 (38%), Gaps = 31/380 (8%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + ++L A+ N + LS VVK AYG G + L GV++ V +V E Sbjct: 39 IHVNLDAVALNVDILKGLSSPKTEIMGVVKGGAYGSGLLPVVEVLLEKGVRELAVATVAE 98 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS---VPQLTFYSKLMSCGVSHPY 124 G+ LR + I +L + P + + NLIP +S + + S + G Sbjct: 99 GLYLRRHGINVPITILGNLVPCEVSDVTQHNLIPSLSWSQALMSVPRESLVYPDGSRLKV 158 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 A+ +DTG +R G+ ++ + + ++ LS+ + + N QL+ F + Sbjct: 159 AINIDTGMSRYGVQPEDLPALVQDLDDLEVTILSMYTHFQSAITEREK--NQKQLDLFLS 216 Query: 185 LIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------HPMQTV 235 +GI +A+++G + G RPG ++ G +K Q Sbjct: 217 ASEPYKCRGITRHVAATTGCVQGLGTDLDFIRPGGAITGLCSGSDKEGTNQFAKKRFQPA 276 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + AR + AG V Y G + D IA + G++DG LS Sbjct: 277 FSVIARPTFYKLLGAGRHVGYDGTYTTSEDEWIANFSTGWSDGLSRRLSNGVGAVRRIST 336 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI--QI---FGPDIKLDDVALAS 350 G PI+G+++MD + + + D + + + +A Sbjct: 337 --------GERCPIVGRVSMDSITVRLPEQP---LPDEVFQVLTDDYDEVTSAVGMARNL 385 Query: 351 GTTNYDLLVRIGTRYAKFYT 370 G Y++ TR + YT Sbjct: 386 GGATYEIPGNWSTRLPRLYT 405 >gi|257126443|ref|YP_003164557.1| alanine racemase [Leptotrichia buccalis C-1013-b] gi|257050382|gb|ACV39566.1| alanine racemase [Leptotrichia buccalis C-1013-b] Length = 390 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 49/391 (12%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+ L+ N + ++ N V+KDNAYGLG I P L F V ++E Sbjct: 5 LEINKENLEKNLEKIRFINKN--IICVIKDNAYGLGIGNILPILIENNCNYFAVAYIDEA 62 Query: 69 VKLRLYTP--------------QARIFVLYGIHPGQEKIIFDTN---LIPVISSVPQLTF 111 +K+R + +I L I P + + + + I S + Sbjct: 63 IKIREILKNFEKEKKLKFLENRKIKIMALNYIKPKKLEYAIENDVELTIFNFSQLSDYLK 122 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----A 167 + ++V++G NRLG + E L+ ++ + + ++ + Sbjct: 123 ILEESFENTVLKIHIKVNSGMNRLGFNESEILELIEKIKKYEINSKNNKLEIISIFSHIS 182 Query: 168 DDPSSHVNSVQLERFRTLIS--HYKGIEASLASS-SGILLGP---NYHFQLTRPGISLYG 221 D + Q+E++ ++ ++ + LL Y++ R G++LYG Sbjct: 183 DAENQLETEKQVEKYENILKIFDKNNVKYQYKHLQASPLLFKYEEKYNYDFARVGMALYG 242 Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 + + V+T +++II IR + +SYG + + RDS I + +IGYA G Sbjct: 243 MEP-LFYDVGLLDVITVKSQIINIRNVKKNDKISYGSKGVVKRDSKIGIVSIGYAHGLQK 301 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD- 340 + + G I+G+I MDM D+TD +E+ D + I G Sbjct: 302 QIENSQE---------AYVLVNGKKAKIVGEICMDMIFVDLTDINDVEINDKVVIVGSQR 352 Query: 341 ---------IKLDDVALASGTTNYDLLVRIG 362 I L VA +GT D+L + Sbjct: 353 NVENGVNERITLRQVARWAGTIQDDVLTKFS 383 >gi|193077032|gb|ABO11785.2| alanine racemase [Acinetobacter baumannii ATCC 17978] Length = 430 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 134/348 (38%), Gaps = 24/348 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++D A ++N N L +G + V+K NAYG + + P++ V +TS Sbjct: 47 AWIEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 106 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E +R + + +I L + N+ ++ + Q T SK + + Sbjct: 107 AEAAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHY 166 Query: 126 L----QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 N L +S + + ++ I++H A D+ + N Sbjct: 167 SLALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAVEDEKYVRERLAQFNE 226 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + K + A+S + P H + R G +YG + + ++ Sbjct: 227 QTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPE---YKRMM 283 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I + L G V Y LTRDS +A +GY+DGY + S Sbjct: 284 AFKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSN----------- 332 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 + G P++G+++M+ M D+TD + GD + +FG + Sbjct: 333 KAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAE 380 >gi|332286614|ref|YP_004418525.1| alanine racemase, catabolic [Pusillimonas sp. T7-7] gi|330430567|gb|AEC21901.1| alanine racemase, catabolic [Pusillimonas sp. T7-7] Length = 388 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 71/378 (18%), Positives = 130/378 (34%), Gaps = 29/378 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNAR------TAAVVKDNAYGLGCEKIAPALYNAGV 57 + ID TA+++N + + L + AV K +AYG E L Sbjct: 22 HNSPLALIDHTAIRHNLNRLRQLLAYPKTLPTPLIWAVAKADAYGHTLEHAYAGLCE--A 79 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V +++E R I + + L +I QL L Sbjct: 80 DGLAVLTLDEARHCRSLGWTGPILAMSAQITQAALEDPILYPLHLIIDHQEQLAAIQSLR 139 Query: 117 SCGVSHPYALQVD--TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 H + + A + + H A A++ + Sbjct: 140 PPFSPHVWLRYRGRLNHAGFDQAGYKSAYASLQSGLRDGRLAELGHLQHYATAEEAEPML 199 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQ-LTRPGISLYGGTDKIN---KSH 230 Q F+ LI G + S++ + R GI+LYG + K Sbjct: 200 AERQA--FQLLIEGLPGPVCTDNSAALLSDHSGAALTSWVRSGIALYGISPLAGLNGKDL 257 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ + +A + + AG+ + YG +R + + + GYA GYP ++ Sbjct: 258 GLRPAMVLQAPLYGFQTLQAGDSLGYGSTFLASRKTRVGLVRCGYAHGYPRSI------- 310 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG-PDIKLDDVALA 349 G + + G M I+G+++MD D+TD G + ++G P++ ++ VA Sbjct: 311 ----PEGCEVMVTGRMATIIGRVSMDTLTIDLTDHPDAGYGTVVTLWGTPELPIEVVAAQ 366 Query: 350 SGTTNYDLLVRIGTRYAK 367 + T L + R + Sbjct: 367 ANTIPAQLCTALTERVPR 384 >gi|296284109|ref|ZP_06862107.1| alanine racemase [Citromicrobium bathyomarinum JL354] Length = 365 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 113/361 (31%), Positives = 178/361 (49%), Gaps = 23/361 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL ID AL +NW +++ LSG AR A VK + YGLG + PAL AG +DFFV Sbjct: 13 LRLAIDTAALAHNWRALDRLSGTARAGAAVKADCYGLGTQNCVPALVEAGARDFFVAHWS 72 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + + ++ VL+G+ G+E + + + G L Sbjct: 73 EVAPVLDHVAPQQVAVLHGVMTGEEARYAIATGVRPVINSLHQAKVWLDAGGGT---CNL 129 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTG NRLGL+ E D + +++SHL+ A++ S N QL FR Sbjct: 130 MVDTGINRLGLAPTELSDPL-----LARLDVQVLMSHLSSAEEH-SAANGHQLAAFRAAQ 183 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + E S+A+S+GI LG +Y LTRPG++LYGG + + ++ V +A II +R Sbjct: 184 ALLPHRETSIANSAGIALGRDYSCDLTRPGLALYGGVPTPDLAGHIRQVAFPQAAIIHVR 243 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + AG+ V Y + + + ++GYADG+ + G +G Sbjct: 244 RIEAGDAVGYNREFTASGPMRVGTVSLGYADGFLRSWG-----------AKGFLRHQGRT 292 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 + +LGK++MDM + D+ + ++VGD++ + L D A SG + Y+LL +G R+ Sbjct: 293 LRLLGKVSMDMVVVDLAQAPDLDVGDWLDV---PYHLPDAAQHSGLSQYELLTTLGHRFE 349 Query: 367 K 367 + Sbjct: 350 R 350 >gi|317471394|ref|ZP_07930748.1| alanine racemase domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901145|gb|EFV23105.1| alanine racemase domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 294 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 122/290 (42%), Gaps = 25/290 (8%) Query: 94 IFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYALQVDTGFNRLGLSL-QEALDFTHNSFN 151 + + + S SK ++VDTG NR+G +E++ Sbjct: 1 MIQHEIEQTVFSYEMAEAISKFAVTMKKDARIHIKVDTGMNRIGFKPTEESVGQVQRIQK 60 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHY--KGIEA---SLASSSGILLGP 206 ++ I +H ACAD+ Q E F +S KGIE +++S+ I+ Sbjct: 61 LPNIKIQGIFTHFACADEKDKTSARHQKELFDQFVSKIEEKGIEIPVKHVSNSAAIMDLR 120 Query: 207 NYHFQLTRPGISLYGGTDKINKSHPMQ---TVVTAEARIILIRKALAGELVSYGGQKKLT 263 + R GI YG ++ + +I +++ GE VSYG Sbjct: 121 ECRMDMVRSGIITYGLYPSEEVDKSAIDLKPALSLISHVIHVKEVGPGEGVSYGSTFVTD 180 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 R + IA +GYADGYP LS G+ I+G PI+G+I MD M D+T Sbjct: 181 RKTRIATIPVGYADGYPRALSSR-----------GRVIIRGQYAPIIGRICMDQFMVDVT 229 Query: 324 DSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D + V D + + G +I +++ A +G+ NY+ + IG R + Y Sbjct: 230 DIEGVSVMDRVTLVGTEGDKNISVEEAADLAGSFNYEFVCGIGKRVPRVY 279 >gi|126641403|ref|YP_001084387.1| alanine racemase [Acinetobacter baumannii ATCC 17978] Length = 409 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 134/348 (38%), Gaps = 24/348 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +++D A ++N N L +G + V+K NAYG + + P++ V +TS Sbjct: 26 AWIEVDTQAFEDNIKRTNQLLNGKTQLCVVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 85 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E +R + + +I L + N+ ++ + Q T SK + + Sbjct: 86 AEAAMVRKHGYKGKITRLRTATDSEIINAHALNIEELLGNYDQATRISKWAEANNTTVHY 145 Query: 126 L----QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 N L +S + + ++ I++H A D+ + N Sbjct: 146 SLALNSGGMDRNGLEMSTAQGKEQAVAITKLPNLKIDGIMTHYAVEDEKYVRERLAQFNE 205 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + K + A+S + P H + R G +YG + + ++ Sbjct: 206 QTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPE---YKRMM 262 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I + L G V Y LTRDS +A +GY+DGY + S Sbjct: 263 AFKTQIAAVNNYLKGSTVGYDQTYTLTRDSKLANLPVGYSDGYRRSFSN----------- 311 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 + G P++G+++M+ M D+TD + GD + +FG + Sbjct: 312 KAFVLVNGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAE 359 >gi|195941892|ref|ZP_03087274.1| alanine racemase (alr) [Borrelia burgdorferi 80a] Length = 372 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 148/357 (41%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++ I+ GE Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++ + +I L ++ G ++I + +D+++ S ++Y+LL IG + Y Sbjct: 314 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370 >gi|146743652|gb|ABQ43057.1| alanine racemase [Borrelia bissettii] Length = 366 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 85/357 (23%), Positives = 146/357 (40%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + GN A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 21 IKNKIGNKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILI 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 81 YIKVDKKEIKNLIKLELVPFVADFEYLFLIEKECALQKNKLKVHLKIDIGMNRYGIKIDS 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS--HYKGIEASLASS 199 AL+ N K +L + SHL +D Q+E+F + K I Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPSTEDF--KTTQKQIEQFLFFLEKLKQKNINPKFVHI 198 Query: 200 SGILLGPNY----HFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARIILIRKALAGE 252 S +Y F + RPG+ LYG + + V++ +++I I+ GE Sbjct: 199 SNSGHIIDYKLSSQFNMIRPGLILYGYCPSSKNKKLALNFKPVLSLFSKVIFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 259 KISYSGTFQAKEDIKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I L ++ G ++I + +D+++ S +NY+LL IG K Y Sbjct: 308 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSNYELLCNIGKYEKKKY 364 >gi|221217500|ref|ZP_03588971.1| alanine racemase [Borrelia burgdorferi 72a] gi|225549860|ref|ZP_03770822.1| alanine racemase [Borrelia burgdorferi 118a] gi|221192778|gb|EEE18994.1| alanine racemase [Borrelia burgdorferi 72a] gi|225369551|gb|EEG99002.1| alanine racemase [Borrelia burgdorferi 118a] Length = 372 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL I + Y Sbjct: 314 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIAKYEKRKY 370 >gi|216264434|ref|ZP_03436426.1| alanine racemase [Borrelia burgdorferi 156a] gi|215980907|gb|EEC21714.1| alanine racemase [Borrelia burgdorferi 156a] Length = 372 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++ + +I L ++ G ++I + +D+++ S ++Y+LL IG + Y Sbjct: 314 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370 >gi|300724984|ref|YP_003714309.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061] gi|297631526|emb|CBJ92233.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061] Length = 410 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 145/363 (39%), Gaps = 27/363 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ ++I+ T +NN H + L+ N + AV+K +AYG G + P++ GV Sbjct: 39 AHNNAWVEINTTTFENNIHILQQKLNRNTKMCAVLKGDAYGHGIGLLMPSVIKTGVLCVG 98 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGV 120 +TS EE +R + ++ + + + ++ +I + + L G Sbjct: 99 ITSNEEARIVRESGFKGQLIRIRTADVSEIESTLGYDMEEIIGDLAHAKTVADLAKKHGK 158 Query: 121 SHPYALQVDTG---FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-----DPSS 172 L ++TG N L + ++ +L I+SH A D D Sbjct: 159 EIRVHLALNTGLMSRNGLEMKTEQGKQEALKMTQLPNLKLVGIMSHHALTDLDAIRDSIK 218 Query: 173 HVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 + N + I +SS + P F + R G +LYG N Sbjct: 219 NFNEQTAWLIKAANLKRDEITLHASSSFASVSIPEAQFDMVRVGSALYGIL--TNTHPEF 276 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + ++ + + ++ G VSY L RDS +A +G++DG+ +LS Sbjct: 277 KPLIQVKTHVASVKSYPKGNGVSYNNTYILKRDSKLANLPVGFSDGFSSSLSN------- 329 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVAL 348 I G+ P++G ++M+ M D+TD ++ GD + IFG +I D+ Sbjct: 330 ----KAYVLINGHRAPVVGSVSMNTVMADVTDLPEVKSGDEVVIFGKQGNEEITQSDIQK 385 Query: 349 ASG 351 G Sbjct: 386 WGG 388 >gi|289674439|ref|ZP_06495329.1| alanine racemase [Pseudomonas syringae pv. syringae FF5] Length = 271 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 119/273 (43%), Gaps = 6/273 (2%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ SG + AVVK +AYG G ++A AL A F V Sbjct: 2 RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-QAQADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++LR +A + +L G E + + + + G Sbjct: 60 IEEALELRAAGIRAPVLLLEGFFEADELAQIVEHDLWTVVHATWQLEAIEQARLGKPITV 119 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L++DTG +R+GL E +++SH + AD+ +S + QL F T Sbjct: 120 WLKLDTGMHRVGLHPHEYQAGYQRLLATGKVARIVLMSHFSRADELNSGCSDEQLAVFET 179 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEAR 241 E SL +S +L P +RPGI LYG T +Q V+T E++ Sbjct: 180 F-RKGLAAETSLKNSPAVLGWPQIPSDWSRPGIMLYGATPFDQAHPLADRLQPVMTLESK 238 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274 II +R+ GE V YG R S I V A+G Sbjct: 239 IISVRELPVGEPVGYGATFVCDRPSRIGVVAMG 271 >gi|325121779|gb|ADY81302.1| alanine racemase [Acinetobacter calcoaceticus PHEA-2] Length = 430 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 133/348 (38%), Gaps = 24/348 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID A ++N N L +G + V+K NAYG + + P++ V +TS Sbjct: 47 AWIEIDTQAFEDNIKRTNQLLNGKTQLCIVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 106 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HP 123 E +R + + +I L + N+ ++ + Q SK + H Sbjct: 107 AEAAMVRKHGYKGKITRLRTATDSEIINAQALNIEELLGNYDQAARMSKWAEANNTTVHY 166 Query: 124 YALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 G +R GL + AL + ++ I++H A D+ + N Sbjct: 167 SLALNSGGMDRNGLEMSTALGKEQAVAITKLPHLKIDGIMTHYAVEDEKFVRERLAQFNE 226 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + K + A+S + P H + R G +YG + M + Sbjct: 227 QTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPEFKGM---M 283 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I + L V Y L RDS +A +GY+DGY + S Sbjct: 284 AFKTQIAAVNNYLKDSTVGYDQTYTLKRDSKLANLPVGYSDGYRRSFSN----------- 332 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 I G P++G+++M+ M D+TD + GD + +FG + Sbjct: 333 KAFVLINGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGRQGNAE 380 >gi|225552449|ref|ZP_03773389.1| alanine racemase [Borrelia sp. SV1] gi|225371447|gb|EEH00877.1| alanine racemase [Borrelia sp. SV1] Length = 372 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 80/357 (22%), Positives = 148/357 (41%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVADFEYLFSIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASL 196 AL+ N K +L + SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGVCSHLPSTENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ + F + RPG+ LYG P + V++ ++II I+ GE Sbjct: 205 SNSGHIINYKLSPQFNMVRPGLILYGYCQSPKNKKPALNFKPVLSLFSKIIFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 265 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++ + +I L ++ G ++I + +D+++ S ++Y+LL IG + Y Sbjct: 314 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 370 >gi|146743646|gb|ABQ43054.1| alanine racemase [Borrelia burgdorferi N40] gi|312149466|gb|ADQ29537.1| alanine racemase [Borrelia burgdorferi N40] Length = 372 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 145/355 (40%), Gaps = 19/355 (5%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSG 201 AL+ N K +L I SHL ++ + ++ F K I +S Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENFKTTQKQIEQFLFFLETLKQKNIHPKFVHTSN 206 Query: 202 ILLGPNY----HFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELV 254 NY F + RPG+ LYG + P + V++ +++ I+ GE + Sbjct: 207 SGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVTFIKNVKKGEKI 266 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314 SY G + D I + IGY DG P +S I I GK+ Sbjct: 267 SYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGKVC 315 Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M++T+ +I L ++ G ++I + +++++ S ++Y+LL IG + Y Sbjct: 316 MNLTIVEIPKDLKVKTGSKVEIVSEKLSINEMSKFSKRSHYELLCNIGKYEKRKY 370 >gi|290476786|ref|YP_003469697.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004] gi|289176130|emb|CBJ82935.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004] Length = 410 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 74/359 (20%), Positives = 144/359 (40%), Gaps = 27/359 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++I+ T +NN H++ L+ + + V+K +AYG G + + P++ G+ +TS Sbjct: 43 AWVEINTTTFENNIHTLQSKLTKDTKVCVVLKGDAYGHGIDLLMPSVIKTGMPCVGITSN 102 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPY 124 EE +R + ++ + + + ++ ++ + + G + Sbjct: 103 EEARIVRESGFKGQLMRIRAAAVTEIESTLGYDMEEMVGDLEHAKTIDALAKKHGKAIRV 162 Query: 125 ALQVDTGF---NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-----DPSSHVNS 176 L ++TG N L + ++ +L ++SH A D + + Sbjct: 163 HLVLNTGRMSRNGLEMKTEQGKQEALKIAQLPNLKLVGMMSHYALKDLDAIREGVNDFKE 222 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 +T I +SS + P F + R G +LYG + ++ Sbjct: 223 QTAWLIKTANLKRNEIILHASSSYASIRVPEAQFDMVRVGSALYGILNPEYPEFKP--LI 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + R+ ++ G VSY L RDS +A IG++DG+ +LS Sbjct: 281 QVKTRVASVKPYPKGNGVSYDNTYILKRDSKLANLPIGFSDGFSSSLSN----------- 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 I G+ P++G ++M+ M D+TD ++ GD + IFG +I D+ G Sbjct: 330 KAFVLINGHRAPVVGLVSMNTVMVDVTDLPDVKSGDEVVIFGKQGKEEITQSDIQKWGG 388 >gi|146743624|gb|ABQ43043.1| alanine racemase [Borrelia burgdorferi] Length = 358 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 82/351 (23%), Positives = 149/351 (42%), Gaps = 23/351 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 21 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 81 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 141 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 199 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG+ Sbjct: 308 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGS 358 >gi|146743632|gb|ABQ43047.1| alanine racemase [Borrelia burgdorferi] Length = 361 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 82/351 (23%), Positives = 148/351 (42%), Gaps = 23/351 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 23 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 82 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 83 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 142 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 143 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 200 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 201 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 260 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 261 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 309 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG Sbjct: 310 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGN 360 >gi|293608485|ref|ZP_06690788.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829058|gb|EFF87420.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 430 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 133/348 (38%), Gaps = 24/348 (6%) Query: 7 LRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID A ++N N L +G + V+K NAYG + + P++ V +TS Sbjct: 47 AWIEIDTQAFEDNIKRTNQLLNGKTQLCIVMKANAYGHSIDLLMPSVMKLNVSCIGITSN 106 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS--HP 123 E +R + + +I L + N+ ++ + Q SK + H Sbjct: 107 AEAAMVRKHGYKGKITRLRTATDSEIINAQALNIEELLGNYDQAARMSKWAEANNTTVHY 166 Query: 124 YALQVDTGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNS 176 G +R GL + AL + ++ I++H A D+ + N Sbjct: 167 SLALNSGGMDRNGLEMATALGKEQAVAITKLPHLKIDGIMTHYAVEDEKFVRERLAQFNE 226 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + K + A+S + P H + R G +YG + M + Sbjct: 227 QTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFPNHPEFKGM---M 283 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I + L V Y L RDS +A +GY+DGY + S Sbjct: 284 AFKTQIAAVNNYLKDSTVGYDQTYTLKRDSRLANLPVGYSDGYRRSFSN----------- 332 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD 344 I G P++G+++M+ M D+TD + GD + +FG + Sbjct: 333 KAFVLINGQKAPVVGRVSMNTVMVDVTDIPEAKAGDEVVLFGHQGNAE 380 >gi|297618459|ref|YP_003703618.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680] gi|297146296|gb|ADI03053.1| alanine racemase [Syntrophothermus lipocalidus DSM 12680] Length = 400 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 136/359 (37%), Gaps = 25/359 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M +N +++D+ AL +N ++ +L N R AV+K NAYGLG A L GV Sbjct: 4 MPNNR--WIEVDIDALVHNLEAVRSLLKENTRLIAVLKANAYGLGAVGTARVLARHGVDY 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 F VT EE +LR I V + + + L ++S S+ Sbjct: 62 FAVTFPEEAFELREGGISTDILVFAPAGEREIEKAVEQGLTLTVASYRDYRLASEAASRF 121 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L++DTG R G++ AL+ + L + +H A A S Q Sbjct: 122 NKKVRIHLKIDTGLGRFGVTADRALELARLIHYDQWLVLEGLYTHFAEAGARSPKFTQSQ 181 Query: 179 LERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD--KINKSHP 231 E+ + + + + +S+ L P H R G L G + Sbjct: 182 FEQLQKTVDALTSNGIRPALIHCCNSAAALRFPEMHLDAVRIGTLLGGQHPAGHVPNKIK 241 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG-----YPLTLSGL 286 ++ +AR+ +R+ AG + Y + S IAV +G+ADG S Sbjct: 242 LKNPYRFKARVTAVREMPAGSYLGYYRTYRTRAASKIAVVPVGFADGLGLEALSRPGSWF 301 Query: 287 DSEHSPSVFLGG---------KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 D + +G K I P+ GK+ M + ++ +E G +++ Sbjct: 302 DLFKIIAKLVGSYLNLSRFTVKVKIGKDEYPVRGKVFMQFCLVELPPDFPVEPGTVVEV 360 >gi|320532158|ref|ZP_08033029.1| alanine racemase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135625|gb|EFW27702.1| alanine racemase [Actinomyces sp. oral taxon 171 str. F0337] Length = 386 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 144/370 (38%), Gaps = 57/370 (15%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R IDL A+ +N + ++G AVVK +AYG G IA +AG V + E Sbjct: 28 RAVIDLEAVAHNGRRLAQVAG-VPWMAVVKADAYGHGLGPIALTALSAGASWLGVAQLAE 86 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-----------------------S 104 + LR +A + G Q + L + S Sbjct: 87 ALTLRSLLDEAGVSRPAGEPSAQAPRVLTWLLPVMEPARAAAEDSPLRAALAADLDLSVS 146 Query: 105 SVPQLTFYSKLMSCGVSHPY-ALQVDTGFNRLGLSLQEALDFT---HNSFNKKLGQLSLI 160 ++PQL S L+VDTG +R G + +E + ++ + + Sbjct: 147 TLPQLEALSAAARAQGRAARLHLKVDTGMSRGGAAPEELPALAVALRRAVDEGTVDVVGL 206 Query: 161 ISHLACADDPSSHVNSVQLERFRT-----LISHYKGIEASLASSSGILLGPNYHFQLTRP 215 SHL+ AD+P+S LER+R + LA++ G+L P L R Sbjct: 207 WSHLSRADEPASGSTEEHLERYRQAEHVVRAAGLNPPIRHLAATGGLLWHPQARMDLVRA 266 Query: 216 GISLYGGTDKI----NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVA 271 GI LYG + ++ + E+ ++ +++ AG+ VSYGG D + + Sbjct: 267 GIGLYGLSPDPSVATGAELGLRPAMRLESPLVQVKRIEAGQAVSYGGTWSAPTDRWVGLV 326 Query: 272 AIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---- 327 +GY+DG P S G + G M I+G++ MD + D+ ++ Sbjct: 327 PLGYSDGIPRAAS-----------SAGPVGVGGIMTSIVGRVCMDQVVVDLGPAVDETGA 375 Query: 328 -----IEVGD 332 VGD Sbjct: 376 PLPAPARVGD 385 >gi|146743634|gb|ABQ43048.1| alanine racemase [Borrelia burgdorferi] gi|146743636|gb|ABQ43049.1| alanine racemase [Borrelia burgdorferi] gi|146743638|gb|ABQ43050.1| alanine racemase [Borrelia burgdorferi] Length = 359 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 148/350 (42%), Gaps = 23/350 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 23 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 82 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 83 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 142 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 143 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 200 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 201 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 260 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 261 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 309 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG Sbjct: 310 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 359 >gi|146743626|gb|ABQ43044.1| alanine racemase [Borrelia burgdorferi] Length = 355 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 148/350 (42%), Gaps = 23/350 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 18 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 77 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 78 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 137 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 138 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 195 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 196 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 255 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 256 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 304 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG Sbjct: 305 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 354 >gi|146743628|gb|ABQ43045.1| alanine racemase [Borrelia burgdorferi] gi|146743630|gb|ABQ43046.1| alanine racemase [Borrelia burgdorferi] Length = 358 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 148/350 (42%), Gaps = 23/350 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 22 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 81 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 82 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 141 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 142 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 199 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 200 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 259 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 260 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 308 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG Sbjct: 309 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 358 >gi|310817895|ref|YP_003950253.1| alanine racemase [Stigmatella aurantiaca DW4/3-1] gi|309390967|gb|ADO68426.1| Alanine racemase [Stigmatella aurantiaca DW4/3-1] Length = 414 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 152/395 (38%), Gaps = 46/395 (11%) Query: 8 RLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L++ +L++N AL + AV+K NAYG G E++ P L + V + Sbjct: 29 WLELSAASLRHNVEVFRALEATGAPARALGAVLKGNAYGHGLEQVLP-LVHPLVDILYFI 87 Query: 64 SVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + ++ + +R ++ V+ I P + + + V++ +L + Sbjct: 88 TPQDALAVRAFERERKLAPRQVLVIGAISPEEAVALAREGVDAVVADSAWAEAGPRLRAA 147 Query: 119 GVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHV 174 + HP + +DTG R G +L++ T + + D Sbjct: 148 RLQHPLRVHVHIDTGLGREGFTLEQLPRDTGFLTEYRDVFEVTGVLSHFANTEDVTEQAY 207 Query: 175 NSVQLERFRTLISH-------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 QLE F + ++ +A+S+ L P ++ R GISLYG Sbjct: 208 ALAQLEAFEAGTARLVEQLSLKGPLQRHIAASAASLSLPRARYEALRVGISLYGFWPSPE 267 Query: 228 KSHPMQ----------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 + V++ R +++ G V YG + + IAV +GY D Sbjct: 268 TRLSTRLVLGGLPTLKPVLSWRCRSQVVKWLPEGSYVGYGCTYRCPEPTRIAVLPVGYFD 327 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP SG + G P+LG++ M+ + D+T + + E + Sbjct: 328 GYPRLASG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATADERPLTATLL 376 Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368 G D + + +A + T +Y+++ R+G+ + Sbjct: 377 GHDGGETLPAETLAGWAQTIHYEVVTRLGSHLRRV 411 >gi|115373926|ref|ZP_01461217.1| alanine racemase [Stigmatella aurantiaca DW4/3-1] gi|115369054|gb|EAU67998.1| alanine racemase [Stigmatella aurantiaca DW4/3-1] Length = 403 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 152/395 (38%), Gaps = 46/395 (11%) Query: 8 RLKIDLTALKNNWHSMNAL----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L++ +L++N AL + AV+K NAYG G E++ P L + V + Sbjct: 18 WLELSAASLRHNVEVFRALEATGAPARALGAVLKGNAYGHGLEQVLP-LVHPLVDILYFI 76 Query: 64 SVEEGVKLR-----LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + ++ + +R ++ V+ I P + + + V++ +L + Sbjct: 77 TPQDALAVRAFERERKLAPRQVLVIGAISPEEAVALAREGVDAVVADSAWAEAGPRLRAA 136 Query: 119 GVSHP--YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPSSHV 174 + HP + +DTG R G +L++ T + + D Sbjct: 137 RLQHPLRVHVHIDTGLGREGFTLEQLPRDTGFLTEYRDVFEVTGVLSHFANTEDVTEQAY 196 Query: 175 NSVQLERFRTLISH-------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 QLE F + ++ +A+S+ L P ++ R GISLYG Sbjct: 197 ALAQLEAFEAGTARLVEQLSLKGPLQRHIAASAASLSLPRARYEALRVGISLYGFWPSPE 256 Query: 228 KSHPMQ----------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 + V++ R +++ G V YG + + IAV +GY D Sbjct: 257 TRLSTRLVLGGLPTLKPVLSWRCRSQVVKWLPEGSYVGYGCTYRCPEPTRIAVLPVGYFD 316 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP SG + G P+LG++ M+ + D+T + + E + Sbjct: 317 GYPRLASG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATADERPLTATLL 365 Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368 G D + + +A + T +Y+++ R+G+ + Sbjct: 366 GHDGGETLPAETLAGWAQTIHYEVVTRLGSHLRRV 400 >gi|59711342|ref|YP_204118.1| alanine racemase [Vibrio fischeri ES114] gi|59479443|gb|AAW85230.1| alanine racemase [Vibrio fischeri ES114] Length = 403 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 81/377 (21%), Positives = 145/377 (38%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A +NN ++ +L + + A++K +AYG G E + ++ V+ +TS Sbjct: 40 AWLEIDTQAFQNNIDTLRASLEQDTKVCAIMKADAYGNGIEGLMASVIERNVECIGITSN 99 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PY 124 EE +R + + P + + + +I S Q +KL + P Sbjct: 100 EEARIVRAKGFVGELMRVRAASPNEIESGLQYKIEELIGSSEQANIIAKLAKQNNTIIPV 159 Query: 125 ALQVD-TGFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSSHVN---S 176 L ++ G R GL L + + D+ + +N Sbjct: 160 HLALNAGGMGRNGLDLSQPQGKKEALNIAFNGHVNIVGIMTHFPNESVDEIRTKLNLFKQ 219 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + I +A+S + P H + RPG LYG + + +V Sbjct: 220 ESQWLIDEAQLNRDDITLHVANSYTTINLPEAHLDMVRPGGLLYGDMPNNPE---YKRIV 276 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + G + Y L RDS++A +GY+DGY ++ Sbjct: 277 QFKTSVASLNYLPKGSTIGYSSTYVLGRDSILANLPLGYSDGYVRSIGN----------- 325 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G I G ++G +M+ TM DITD +++ GD + +FG I+ ++ S Sbjct: 326 NGYVLINGQKANVVGVTSMNTTMVDITDIKNVQPGDEVVLFGKQNEFTIEAKEMEAFSSR 385 Query: 353 TNYDLLVRIGTRYAKFY 369 + +L V G+ K Y Sbjct: 386 SMPELYVIWGSTNPKIY 402 >gi|160941188|ref|ZP_02088525.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC BAA-613] gi|158435749|gb|EDP13516.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC BAA-613] Length = 392 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 136/354 (38%), Gaps = 30/354 (8%) Query: 8 RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I L +++N+ + + + + VK NAYG G L G + S+ Sbjct: 11 WLEISLDNVRDNFFAFKKMVGPDVKVMPAVKANAYGHGIVPCGKELEACGADYLGMGSIS 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 E +KLR + + V + ++ +LIP I S + S S P Sbjct: 71 EAIKLRENGVKMPLLVFASNTIEEVAELYIQYHLIPTILSEREAKAISDAASS--PVPVF 128 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFR 183 +++DTG RLG++ +E DF + + SH+A + D S+ Q ERF Sbjct: 129 VKIDTGRGRLGVNAEEFPDFYRKITALPNLYVEGVYSHMAAVNWPDVSAEYGLWQYERFS 188 Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQTV 235 I K LA++ G + P PG +++G + + + Sbjct: 189 AAIEVLGEEGKKIPFCQLANTPGGIALPEIRMTGVCPGRAIWGYSPLDRREGHPQLKHPI 248 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++R+I I + G+ KL I + A G DG L Sbjct: 249 TAWKSRLIHINQVCGGKFGENYKAVKLDSPKRIGIMAGGLGDGISPKL------------ 296 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 GG + G + I+++ T+ D+ D +VGD I I G +I ++ Sbjct: 297 AGGYVLLHGRKAKVASTISLEHTIIDLADFPDAKVGDEIVILGRQGDEEITMEQ 350 >gi|197334487|ref|YP_002155497.1| alanine racemase [Vibrio fischeri MJ11] gi|197315977|gb|ACH65424.1| alanine racemase [Vibrio fischeri MJ11] Length = 403 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 80/377 (21%), Positives = 143/377 (37%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A +NN ++ +L + A++K +AYG G E + ++ V+ +TS Sbjct: 40 AWLEIDTQAFQNNIDTLRASLEQGTKVCAIMKADAYGNGIEGLMASVIERNVECIGITSN 99 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH-PY 124 EE +R + + P + + + +I S Q +KL + P Sbjct: 100 EEARIVRAKGFVGELMRVRAASPNEIESGLQYKIEELIGSSEQANIIAKLAKQNDTIIPV 159 Query: 125 ALQVD-TGFNRLGLSLQEA----LDFTHNSFNKKLGQLSLIISHLACADDPSSHVN---S 176 L ++ G R GL L + + D+ + +N Sbjct: 160 HLALNAGGMGRNGLDLSQPQGKKEALNIAFNGHVNIVGIMTHFPNESVDEIRTKLNLFKQ 219 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + I +A+S + P H + RPG LYG + + +V Sbjct: 220 ESQWLIDEAQLNRDDITLHVANSYTTINLPEAHLDMVRPGGLLYGDMPNNPE---YKRIV 276 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + G + Y L RDS++A +GY+DGY ++ Sbjct: 277 QFKTSVASLNYLPKGSTIGYSSTYVLGRDSILANLPLGYSDGYVRSIGN----------- 325 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 G I G ++G +M+ TM D+TD +++ GD + +FG I+ ++ S Sbjct: 326 NGYVLINGQKANVVGVTSMNTTMVDVTDIKNVQPGDEVVLFGKQNEFTIEAKEMEAFSSR 385 Query: 353 TNYDLLVRIGTRYAKFY 369 + +L V G K Y Sbjct: 386 SMPELYVIWGATNPKIY 402 >gi|260364032|ref|ZP_05776760.1| alanine racemase [Vibrio parahaemolyticus K5030] gi|260876638|ref|ZP_05888993.1| alanine racemase [Vibrio parahaemolyticus AN-5034] gi|260898078|ref|ZP_05906574.1| alanine racemase [Vibrio parahaemolyticus Peru-466] gi|260902333|ref|ZP_05910728.1| alanine racemase [Vibrio parahaemolyticus AQ4037] gi|308085806|gb|EFO35501.1| alanine racemase [Vibrio parahaemolyticus Peru-466] gi|308093954|gb|EFO43649.1| alanine racemase [Vibrio parahaemolyticus AN-5034] gi|308110937|gb|EFO48477.1| alanine racemase [Vibrio parahaemolyticus AQ4037] gi|308114571|gb|EFO52111.1| alanine racemase [Vibrio parahaemolyticus K5030] Length = 404 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 149/377 (39%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A NN + L GN + A++K +AYG G + P++ V +TS Sbjct: 41 AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 100 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EE +R + + +I + + + + +I + Q ++ P Sbjct: 101 EEARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 160 Query: 125 ALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPS---SHVNS 176 L ++T G N L L+ E + ++ +++H D+ Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPNEGLDEIRRKVDRFKV 220 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + K I +A+S L P H + RPG LYG + P + +V Sbjct: 221 ETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYERIV 277 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + RI + AG + YG K L RDS++A IGY+DG+ +LS Sbjct: 278 SFKTRIASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN----------- 326 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++GK +M+ TM D+TD + ++ D + +FG I ++ SG Sbjct: 327 KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEKSGR 386 Query: 353 TNYDLLVRIGTRYAKFY 369 + G + Y Sbjct: 387 ILPEHYTIWGATNPRVY 403 >gi|153837983|ref|ZP_01990650.1| alanine racemase [Vibrio parahaemolyticus AQ3810] gi|149748591|gb|EDM59450.1| alanine racemase [Vibrio parahaemolyticus AQ3810] Length = 404 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 149/377 (39%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A NN + L GN + A++K +AYG G + P++ V +TS Sbjct: 41 AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 100 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EE +R + + +I + + + + +I + Q ++ P Sbjct: 101 EEARVVREHGFKGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 160 Query: 125 ALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPS---SHVNS 176 L ++T G N L L+ E + ++ +++H D+ Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPNEGLDEIRRKVDRFKV 220 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + K I +A+S L P H + RPG LYG + P + +V Sbjct: 221 ETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYERIV 277 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + AG + YG K L RDS++A IGY+DG+ +LS Sbjct: 278 SFKTRVASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN----------- 326 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++GK +M+ TM D+TD + ++ D + +FG I ++ SG Sbjct: 327 KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEKSGR 386 Query: 353 TNYDLLVRIGTRYAKFY 369 + G + Y Sbjct: 387 ILPEHYTIWGATNPRVY 403 >gi|328472253|gb|EGF43123.1| alanine racemase [Vibrio parahaemolyticus 10329] Length = 404 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 149/377 (39%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A NN + L GN + A++K +AYG G + P++ V +TS Sbjct: 41 AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 100 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EE +R + + +I + + + + +I + Q ++ P Sbjct: 101 EEARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 160 Query: 125 ALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPS---SHVNS 176 L ++T G N L L+ E + ++ +++H D+ Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPNEGLDEIRRKVDRFKV 220 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + K I +A+S L P H + RPG LYG + P + +V Sbjct: 221 ETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYERIV 277 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + R+ + AG + YG K L RDS++A IGY+DG+ +LS Sbjct: 278 SFKTRVASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN----------- 326 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++GK +M+ TM D+TD + ++ D + +FG I ++ SG Sbjct: 327 KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEKSGR 386 Query: 353 TNYDLLVRIGTRYAKFY 369 + G + Y Sbjct: 387 ILPEHYTIWGATNPRVY 403 >gi|260461729|ref|ZP_05809975.1| alanine racemase [Mesorhizobium opportunistum WSM2075] gi|319785281|ref|YP_004144757.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032370|gb|EEW33635.1| alanine racemase [Mesorhizobium opportunistum WSM2075] gi|317171169|gb|ADV14707.1| alanine racemase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 381 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 72/381 (18%), Positives = 137/381 (35%), Gaps = 30/381 (7%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ +IDL A+++N+ + + A +K NAYG G +A L G F Sbjct: 16 ASREAWYEIDLGAIRHNYRQLRRHLPRTVKIFACLKRNAYGCGAGPVARTLATEGADGFA 75 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V ++ + + +R + + G P K I L +SS+ + + Sbjct: 76 VATLPDAMAIREMGIDLPVLLYPGPLPTSAKTIEALGLTVTVSSLDE---LESWRAAMSV 132 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-----ADDPSSHVNS 176 ++ D GF R G + QE + ++ + +HL+ D S + Sbjct: 133 TRIFVKADLGFFRAGATPQEIGRLLAAAHVCSDVEVQGLYAHLSELPTSVTSDASEQFSR 192 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG--GTDKINKSHPMQT 234 +Q S + ++S++G+L P PG G TD+ ++ ++ Sbjct: 193 LQRILQDAEASGTRPPIIMMSSTAGVLRHPAMDLDAVDPGALFIGLPETDRPMRAVTLRP 252 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + A + ++ K + L I V +G+ DG P V Sbjct: 253 ALKAISTCLVSVKRIDASLGPIPDIPGFRSGMTIGVLGMGWGDGLPRH-----------V 301 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 + ++G +L ++ D+TD GD + + G I ++VA Sbjct: 302 PAQAEALVRGQRARLLPPAHLEHLRIDLTDVPDARFGDQVLLLGQQAHQTISHEEVAAQW 361 Query: 351 GT--TNYDLLVRIGTRYAKFY 369 GT L ++ + Y Sbjct: 362 GTDLIG--LYAQLRDHIPRVY 380 >gi|262368964|ref|ZP_06062293.1| alanine racemase [Acinetobacter johnsonii SH046] gi|262316642|gb|EEY97680.1| alanine racemase [Acinetobacter johnsonii SH046] Length = 408 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 82/344 (23%), Positives = 140/344 (40%), Gaps = 23/344 (6%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++I++ + N ++ L ++ AV+K +AYG G E + P++ V +TS Sbjct: 43 AWVEINVQTFEQNIQTLQQQLQDKSQFCAVMKADAYGHGIELLMPSIIKLNVPCVGITSN 102 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPY 124 E +R Q R+ L + + N+ ++ + Q S+ G+ Y Sbjct: 103 AEAALVRKSGYQGRLLRLRAATDQEIQNAASLNMEELLGNYEQAQRLSEWAKQQGLILEY 162 Query: 125 ALQVD-TGFNRLGLSLQEAL--DFTHNSFNKKLGQLSLIISHLACADDPSSH-----VNS 176 L ++ G +R GL L AL +L I++H A D+ N Sbjct: 163 HLGLNAGGMDRNGLELNSALGKQQALRMTKLPNLKLVGIMTHYAVEDEKYVRERLAVFNQ 222 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + + A+S L P H + R G +YG D + + ++ Sbjct: 223 QTDWIIKKAKLKREALTLHTANSFATLTVPESHLDMVRAGGVIYG--DSLPDRVEYKKLM 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T + ++ + L G V Y L RDSL+A +GY+DGY S Sbjct: 281 TFKTQVATVNAYLKGTTVGYDQTYTLKRDSLLANLPLGYSDGYRRAFSN----------- 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 I+G+ VP++G+ +M+ TM DITD I D + +FG Sbjct: 330 KAYVLIRGHKVPVVGRTSMNTTMVDITDFPDIRANDEVVLFGEQ 373 >gi|28899622|ref|NP_799227.1| alanine racemase [Vibrio parahaemolyticus RIMD 2210633] gi|28807874|dbj|BAC61111.1| putative alanine racemase [Vibrio parahaemolyticus RIMD 2210633] Length = 392 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 149/377 (39%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A NN + L GN + A++K +AYG G + P++ V +TS Sbjct: 29 AWLEIDTQAFSNNIQLLQKDLKGNTQICAIMKADAYGNGIAGLMPSIIANNVACVGITSN 88 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPY 124 EE +R + + +I + + + + +I + Q ++ P Sbjct: 89 EEARVVREHGFEGKIMRVRAASRNEIENGVQYEIEELIGTKMQADQIIEIAYNYNTVIPV 148 Query: 125 ALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA--DDPS---SHVNS 176 L ++T G N L L+ E + ++ +++H D+ Sbjct: 149 HLALNTSGMGRNGLDLTTYEGQVEGVEIASDPNLKIVGMMTHFPNEGLDEIRRKVDRFKV 208 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + K I +A+S L P H + RPG LYG + P + +V Sbjct: 209 ETKWLMDSAGLKRKDITLHVANSYITLNLPEAHLDMVRPGGMLYGDYP---ATLPYERIV 265 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + RI + AG + YG K L RDS++A IGY+DG+ +LS Sbjct: 266 SFKTRIASLHFFPAGSTIGYGSTKVLERDSILANLPIGYSDGFARSLSN----------- 314 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 I G ++GK +M+ TM D+TD + ++ D + +FG I ++ SG Sbjct: 315 KADVLINGQRARVMGKASMNTTMVDVTDIIGVQANDEVVVFGRQGFEEITAEETEEKSGR 374 Query: 353 TNYDLLVRIGTRYAKFY 369 + G + Y Sbjct: 375 ILPEHYTIWGATNPRVY 391 >gi|203284081|ref|YP_002221821.1| alanine racemase [Borrelia duttonii Ly] gi|201083524|gb|ACH93115.1| alanine racemase [Borrelia duttonii Ly] Length = 370 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 153/380 (40%), Gaps = 26/380 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ + I+ L++N ++ + A +K +AYG G + + F Sbjct: 4 MTKHK--EIIINFKNLEHNLITIKSHVHKKELVATLKADAYGHGLIQTFKFFKEKNINYF 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSC 118 + S+ + +KLR ++ I + I + Q + Sbjct: 62 GLFSIYDALKLRKIDKKSNILLYINNINKNAIKNLVNFEITPFVADSQYLSLIEEECKRQ 121 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD G NR G+ + AL+ + KL + I +HL ++ + + Q Sbjct: 122 NKKIKVHLKVDVGMNRYGIKTENALNLATKIQDSKLVEFEGICTHLPTTEN--TKITQTQ 179 Query: 179 LERFRTLISH--YKGIEASLASSSGILLGPNY----HFQLTRPGISLYGGT---DKINKS 229 ++F LI+ K I S NY F + RPG+ LYG + N + Sbjct: 180 SKKFDYLINELKNKNINPKFIHISNSGHITNYKISEKFNMIRPGLILYGYHPNPNNQNNN 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ +++I I+ G+ +SY G K D I + +GY DG P S Sbjct: 240 LKLKPVLNLYSKVIFIKNIKKGDQISYSGLFKAKEDMQIGLIPVGYFDGIPQNTS----- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349 IK I GKI M++++ +I L I +GD ++I + LD ++ Sbjct: 295 ------KNFYCIIKNKKCFIRGKICMNISIIEIPQDLKINIGDKVEIVSERLSLDILSKE 348 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 SG + Y+LL IG K Y Sbjct: 349 SGRSTYELLCSIGKNEKKKY 368 >gi|291562623|emb|CBL41439.1| alanine racemase [butyrate-producing bacterium SS3/4] Length = 403 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 145/390 (37%), Gaps = 43/390 (11%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-NAGVQDFFVTSVE 66 RL+I+L+ + N + A +G VVK NAYG G +A L G++ V + Sbjct: 9 RLEINLSRIGRNIDKIRAYTGGLGLIPVVKSNAYGYGTAAVANFLVRRCGIRFLAVARLF 68 Query: 67 EGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG--VSHP 123 E +++ P I +L + Q I + + V S+ S Sbjct: 69 EACQIQDSGCPDCGILILGPVPAFQIPTIVKRKIEIPLFRVEDAKRLSEEAKKQGLASVK 128 Query: 124 YALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPS----SHVNSVQ 178 ++++TG NR+G +E D ++ + +H A AD + + Q Sbjct: 129 AHIKIETGMNRIGARPGKELSDLLSCIKGLGNIEIDGVFTHFATADQANEGKGNDFTREQ 188 Query: 179 LERFRTLISHYK-----GIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSHP 231 RF +S + ++ + R G G + N +P Sbjct: 189 FSRFLEGLSQIREAGITPRYVHCCNTGATAWLKEAYSVCTHVRTGSLYLGYSSIQNDWNP 248 Query: 232 M--QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + + + + I+ IR+ + GE V YG + +AV IGY DGY + Sbjct: 249 IGVEESGSWKTMIVNIREIVPGESVGYGRTFMPDHPAKVAVIGIGYGDGYTRSF------ 302 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLD 344 G I G +G MDM+ D+TD ++GD + +FG D I Sbjct: 303 ----AVSGAPALINGVRCRFVGT-CMDMSFLDVTDV-DCKIGDEVTLFGEDGKGNRISGL 356 Query: 345 DVALASGTTNYD----LLVRIGTRYAKFYT 370 ++ G + + I R A+ Y+ Sbjct: 357 EIGHLMG----ETRLAMFSHITERAARTYS 382 >gi|203287620|ref|YP_002222635.1| alanine racemase [Borrelia recurrentis A1] gi|201084840|gb|ACH94414.1| alanine racemase [Borrelia recurrentis A1] Length = 370 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 88/380 (23%), Positives = 154/380 (40%), Gaps = 26/380 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ + I+ L++N ++ + A +K +AYG G + + F Sbjct: 4 MTKHK--EIIINFKNLEHNLITIKSHVHKKELVATLKADAYGHGLIQTFKFFKEKNINYF 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--SKLMSC 118 + S+ + +KLR ++ I + I + Q + Sbjct: 62 GLFSIYDALKLRKIDKKSNILLYINNINKNAIKNLVNFEITPFVADSQYLSLIEEECKRQ 121 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 L+VD G NR G+ + AL+ + KL + I +HL ++ + + Q Sbjct: 122 NKKIKVHLKVDVGMNRYGIKTENALNLATKIQDSKLVEFEGICTHLPTTEN--TKITQTQ 179 Query: 179 LERFRTLISH--YKGIEASLASSSGILLGPNY----HFQLTRPGISLYGGT---DKINKS 229 ++F LI+ K I S NY +F + RPG+ LYG + N + Sbjct: 180 SKKFDYLINELKNKNINPKFIHISNSGHITNYKISENFNMIRPGLILYGYHPNPNNQNNN 239 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V+ +++I ++ G+ +SY G K D I + +GY DG P S Sbjct: 240 LKLKPVLNLYSKVIFVKNIKKGDQISYSGLFKAKEDMQIGLIPVGYFDGIPQNTS----- 294 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349 IK I GKI M++++ +I L I +GD ++I + LD ++ Sbjct: 295 ------KNFYCIIKDKKCFIRGKICMNISIIEIPQDLKINIGDKVEIVSERLSLDILSKE 348 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 SG + Y+LL IG K Y Sbjct: 349 SGRSTYELLCSIGKNEKKKY 368 >gi|183599355|ref|ZP_02960848.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827] gi|188021591|gb|EDU59631.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827] Length = 407 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 144/358 (40%), Gaps = 28/358 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +AL N + AL G+ + AV+K +AYG + P + VQ +T+ + Sbjct: 44 WIEISRSALDFNIKKVQALLGDKSSLCAVLKGDAYGHDLTLVTPLMIENNVQCIGLTNNQ 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-MSCGVSHPYA 125 E ++R + R+ + + ++ +I ++ + + P Sbjct: 104 EFKQVRELGFKGRLMRVRNATEQEMAQATAYDVEELIGNLDMAQRLNDIGKKQNKVIPIH 163 Query: 126 LQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +++ N L +S + L+ ++ I+SH D+ + + ++ Sbjct: 164 LALNSAGMSRNGLEVSHAQGLNDAKMIAQLPQLKVVGIMSHYPEEDEAQIRKDLAKFKKQ 223 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + G++ +A++ + P + R G YG T + V+T Sbjct: 224 SQQVLDVTGLKREDVILHVANTYATITVPESWLDMVRVGGIFYGDTVATKD---YKRVMT 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ I + G V Y L RDS++A +GYADGY S Sbjct: 281 LKSNIASVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN-----------A 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+LGK +M+ M D+TD ++ GD + FG +I ++V SG Sbjct: 330 GHALINGQTVPVLGKTSMNTVMVDVTDLKQVQPGDEVVFFGKQGNGEITAEEVEDISG 387 >gi|197285632|ref|YP_002151504.1| alanine racemase [Proteus mirabilis HI4320] gi|194683119|emb|CAR43692.1| putative alanine racemase [Proteus mirabilis HI4320] Length = 407 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 30/359 (8%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +AL N + +L G + AV+K +AYG +AP + VQ VT+ + Sbjct: 44 WIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQ 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++R + R+ + + + N+ +I + + P Sbjct: 104 ELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIH 163 Query: 126 LQVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +++G +R GL + +L L ++ ++ + V L RF+ Sbjct: 164 LALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYPEEDVNKV-REDLARFKQ 222 Query: 185 LIS--------HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + +A++ + P + R G YG S + V+ Sbjct: 223 QSQKVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYG---DTIASTDYKRVM 279 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I I G V Y L RDS++A +GYADGY S Sbjct: 280 TFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN----------- 328 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+LGK +M+ M DIT +I+ GD + FG +I +++ SG Sbjct: 329 AGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDISG 387 >gi|224531812|ref|ZP_03672444.1| alanine racemase [Borrelia valaisiana VS116] gi|224511277|gb|EEF81683.1| alanine racemase [Borrelia valaisiana VS116] Length = 366 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 146/351 (41%), Gaps = 23/351 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ KL+ +I + Sbjct: 21 IKNKIGEKEIVATLKADAYGHGLINIFKFLKSKKINYFGLSNIEDAKKLKKIDKSIKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 81 YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDIGMNRYGIKIDS 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L + SHL ++ Q+E+F + + + Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPTTENF--KTTQKQIEQFLFFLETLKQKNINPKFVHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGE 252 ++S IL N F + RPG+ LYG + + V+ +++I I+ GE Sbjct: 199 SNSGHILNYKLNPQFNMVRPGLILYGYSPFPKNKKTILNFKPVLNLFSKVIFIQNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + +D + + IGY DG P ++ I I GK Sbjct: 259 KISYSGIFQAKKDMKVGIIPIGYFDGIPQNINN-----------NFYFLINNKKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 + M++T+ +I L ++ G ++I + +D ++ S +NY+LL IG Sbjct: 308 VCMNITIVEIPKDLKVKTGSKVEIVSEKLSIDKMSKFSKRSNYELLCNIGK 358 >gi|167465430|ref|ZP_02330519.1| alanine racemase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 314 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 24/263 (9%) Query: 120 VSHPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 ++VD+G +R+G +EA+ + L + +H ACAD+ +Q Sbjct: 45 KRLRVHVKVDSGMHRIGLYKEEEAVSYLKQIARMPHICLEGLFTHYACADEADKAYTRLQ 104 Query: 179 LERFRTLISHYKGIEASLA-----SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH--- 230 E+F ++ K + + +S+ + P + + R GI++YG H Sbjct: 105 YEKFSRVVHEVKRLGIDIPYIHAGNSAAAIDTPELVYNMARLGIAMYGLYPSEKVDHTII 164 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 ++ V++ + R+I + G +SYG + I IGYADG+ LS Sbjct: 165 KLEPVMSLKTRMIHDKWLSEGSGISYGTIYHTKGEERIGTLPIGYADGFSRMLS------ 218 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDV 346 I+G VPI+G+I MD M +IT E GD + + G I +++ Sbjct: 219 -----TKANALIRGKRVPIVGRICMDQCMLNITGVPEAEAGDEVVLIGRQGDEVIPAEEI 273 Query: 347 ALASGTTNYDLLVRIGTRYAKFY 369 A GT NY++ + R + Y Sbjct: 274 AGHLGTINYEVTCMMAHRIPRVY 296 >gi|237731612|ref|ZP_04562093.1| alanine racemase [Citrobacter sp. 30_2] gi|226907151|gb|EEH93069.1| alanine racemase [Citrobacter sp. 30_2] Length = 408 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 143/359 (39%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I +AL+ N H + L G+ R A++K +AYG + P + GVQ + S Sbjct: 44 TTLEISRSALEYNIHKVQQLLGDKTRMCAILKGDAYGHDLSLVTPVMMQNGVQCIGIASN 103 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 EE +R +++ + + + D + +I ++ S + G + Sbjct: 104 EEISTVRQSGYTSQLMRVRNATEKEMRQAADFDTEELIGNLDMAKRLSAIAQEKGKTIRI 163 Query: 125 ALQVDTG-FNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADD-----PSSHVNS 176 L +++G +R GL + A ++ I+SH D + N+ Sbjct: 164 HLALNSGGMSRNGLEVSTAAGLEEARAISALPGLKIVGIMSHFPEEDAAVVKRDLARFNT 223 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + + + +A++ L P + R G YG S + V+ Sbjct: 224 QSAQVLKITGLKREDVTLHVANTFATLTVPESWLDMVRVGGIFYG---DTIGSTEYKRVM 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDS++A GYADGY S Sbjct: 281 TFKSAIASVNHYPKGNTVGYDRTYTLKRDSVLANIPTGYADGYRRVFSN----------- 329 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G VP+LGK +M+ + D+TD + GD + +FG + ++V SG Sbjct: 330 AGHVLIRGQRVPVLGKTSMNTVIVDVTDLPQVASGDEVVLFGKQGNAQVSAEEVEEISG 388 >gi|218662157|ref|ZP_03518087.1| putative alanine racemase [Rhizobium etli IE4771] Length = 325 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 160/316 (50%), Positives = 204/316 (64%), Gaps = 11/316 (3%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DLTAL NW M SG AR AAVVK +AYGLG E ALY AG +DFFV +V+ Sbjct: 21 LRLTVDLTALTENWRDMARRSGAARAAAVVKADAYGLGIEDAGEALYTAGARDFFVATVD 80 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV LRLY P ARIFVL GI PG E+ FD +L+PVISS QL F+ +++ + AL Sbjct: 81 EGVTLRLYAPDARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYSCAL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 VDTGF G L++SHLAC DDP++ +N QLE FR + Sbjct: 141 HVDTGFTGWG-----------CISTMPSFAPVLVMSHLACGDDPTNAMNRQQLESFRRVT 189 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG ++PM+ V TAEARII +R Sbjct: 190 AAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCGMANPMRPVATAEARIIQVR 249 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE VSYG +L RDS +A+ + GYADGY + S +V GG+GFI G+ Sbjct: 250 TVGAGETVSYGRALQLPRDSRLAIVSAGYADGYMRSQSSGGVPLRQAVPQGGQGFIAGHK 309 Query: 307 VPILGKITMDMTMFDI 322 VP+ G+ITMD+T+FD+ Sbjct: 310 VPVAGRITMDLTIFDV 325 >gi|146743640|gb|ABQ43051.1| alanine racemase [Borrelia burgdorferi ZS7] Length = 356 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 23/348 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 22 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 81 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 82 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 141 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 142 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 199 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + P + V++ +++I I+ GE Sbjct: 200 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKPALNFKPVLSLFSKVIFIKNVKKGE 259 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 260 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 308 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + M++T+ +I L ++ G ++I + +D+++ S ++Y+LL Sbjct: 309 VCMNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCN 356 >gi|227356137|ref|ZP_03840526.1| alanine racemase [Proteus mirabilis ATCC 29906] gi|227163601|gb|EEI48517.1| alanine racemase [Proteus mirabilis ATCC 29906] Length = 407 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 141/359 (39%), Gaps = 30/359 (8%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +AL N + +L G + AV+K +AYG +AP + V+ VT+ + Sbjct: 44 WIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVKCIGVTNNQ 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++R + R+ + + + N+ +I + + P Sbjct: 104 ELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIH 163 Query: 126 LQVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +++G +R GL + +L L ++ ++ ++ V L RF+ Sbjct: 164 LALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYPEEDANKV-REDLARFKQ 222 Query: 185 LISH--------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + +A++ + P + R G YG S + V+ Sbjct: 223 QSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYG---DTIASTDYKRVM 279 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I I G V Y L RDS++A +GYADGY S Sbjct: 280 TFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN----------- 328 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+LGK +M+ + DIT +I+ GD + FG +I +++ SG Sbjct: 329 AGHALIAGQRVPVLGKTSMNTVIVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDISG 387 >gi|291165697|gb|EFE27745.1| alanine racemase [Filifactor alocis ATCC 35896] Length = 383 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 143/378 (37%), Gaps = 29/378 (7%) Query: 9 LKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ID + N + + + V+KDNAYGLG ++A GV + V ++ E Sbjct: 17 AVIDREIYRKNIRLIQHQIGKDTGLILVLKDNAYGLGATELARVGMQEGVSCYAVANLYE 76 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYAL 126 ++LR RI VL I+ I ++ V+ + Y + S G + Sbjct: 77 ALELRKLDSDIRIIVLGYINEDARTIALQYDIDVVVWTKELALSYQQLGFSSGKQARIHI 136 Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +VDTG +RLG +E+L + + SH AC + + QL F T Sbjct: 137 KVDTGLSRLGFLPNEESLAVLEEISKMEHLTIVSTFSHFACTETDDDDFSRGQLSTFLTF 196 Query: 186 ISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN-----KSHPMQTV 235 + K +A S+GI+ P H R G G + + +P + + Sbjct: 197 VDSMKKRGIQPGFIHMADSAGIVKFPESHLDFVRCGALAMGSMTGTDVVKSSEQYPTEEI 256 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ +++ ++ G + Y G D + +GY DG LS Sbjct: 257 ISLYSQVARVQDFPKGTSIGYDGTYFADHDIRVVTVPMGYGDGLSGELSNSM-------- 308 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 + I G +G MDM MFD T + GD + I G D + L D Sbjct: 309 ---QVIINGKKAKSVGAFCMDMAMFDATGI-DCKEGDTVTILGQDGNEKVSLHDWTKLCT 364 Query: 352 TTNYDLLVRIGTRYAKFY 369 +++ L + + K Y Sbjct: 365 SSSTFLQSMLRNKIPKEY 382 >gi|212710795|ref|ZP_03318923.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM 30120] gi|212686492|gb|EEB46020.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM 30120] Length = 413 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 141/358 (39%), Gaps = 28/358 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +AL N + L G+ A AV+K ++YG + P + VQ +TS Sbjct: 50 WIEISHSALDYNIKKVQTLLGDKAGLCAVLKGDSYGHDLTLVTPVMIENNVQCIGLTSNT 109 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++R + R+ + + + ++ +I ++ + P Sbjct: 110 EFKQVRDLGFKGRLMRVRNATEKEMAQATEFHVEELIGNLDMAQRLNAIGAKQNTIIPIH 169 Query: 126 LQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +++ N L +S E L ++ I+SH D+ + + ++ Sbjct: 170 LALNSAGMSRNGLEVSNAEGLQQAKLISQLPNLKIVGIMSHYPEEDEAQIRQDLAKFKKQ 229 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + G++ +A++ L P + R G YG + + V+T Sbjct: 230 SQQVLKMTGLKREDVTLHVANTYATLTVPESWLDMVRVGGIFYG---DTIATKDYKRVMT 286 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ I + G V Y L RDS++A +GYADGY S Sbjct: 287 FKSNIAAVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN-----------A 335 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+ GK +M+ M DITD +++ GD + FG +I ++V SG Sbjct: 336 GHVLINGQRVPVFGKTSMNTVMVDITDLKNVQPGDEVVFFGKQGNGEITAEEVEEISG 393 >gi|54310452|ref|YP_131472.1| alanine racemase [Photobacterium profundum SS9] gi|46914893|emb|CAG21670.1| putative alanine racemase [Photobacterium profundum SS9] Length = 404 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 77/377 (20%), Positives = 136/377 (36%), Gaps = 28/377 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+ID A N + L + + A++K +AYG G + P++ V +TS Sbjct: 41 AWLEIDTQAFSGNIQLLQNQLKADTKICAIMKADAYGNGIAGLMPSIIANQVPCVGITSN 100 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPY 124 EE +R + +I + + + + +I + Q + G + P Sbjct: 101 EEARVVRKHGFIGKIMRVRAASKNEIEGGLQYQMEELIGTKAQADQIIEIARANGTTIPV 160 Query: 125 ALQVDT-GFNRLGL-------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 L ++T G R GL ++ + L Sbjct: 161 HLALNTSGMGRNGLDLTTYEGQVEGVEIAGDPNLEIVGMMTHFPNEGLDEIKRKVKRFKV 220 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + K + +A+S L P H + RPG LYG P Q +V Sbjct: 221 ETKWLMDSTDLKRKDVTLHVANSYITLNLPEAHLDMVRPGGMLYGDYPATA---PYQRIV 277 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + + AG + YG L RDS++A IGY+DG+ +L Sbjct: 278 SFKTHVASLHHFPAGSTIGYGSTAVLERDSVLANLPIGYSDGFARSLGN----------- 326 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGT 352 + I G ++G ++M+ TM D+TD + ++ + + IFG I ++ S Sbjct: 327 KAEVLINGQRARVMGMVSMNTTMVDVTDIVDVQTNEEVVIFGRQGFEEITGEETEEKSNR 386 Query: 353 TNYDLLVRIGTRYAKFY 369 + G + Y Sbjct: 387 ILPEHYTVWGATNPRIY 403 >gi|261345933|ref|ZP_05973577.1| alanine racemase [Providencia rustigianii DSM 4541] gi|282566018|gb|EFB71553.1| alanine racemase [Providencia rustigianii DSM 4541] Length = 407 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 141/358 (39%), Gaps = 28/358 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +AL N + AL G+ AV+K +AYG + P + VQ +TS Sbjct: 44 WIEISHSALDYNIKKVQALLGDKTGMCAVLKGDAYGHDLTLVTPVMIENNVQCIGLTSNS 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYA 125 E ++R R+ + + + N+ +I ++ + + G P Sbjct: 104 ELKQVRDLGFNGRLMRVRNATEKEMAQATEFNVEELIGNLEMAQRLNAIAVKQGKIIPIH 163 Query: 126 LQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L +++ N L + L ++ I+SH D + V+ ++ Sbjct: 164 LALNSAGMSRNGLEVGTSTGLQQAKLISELPNLKIVGIMSHYPEEDAAQIRKDLVKFKKQ 223 Query: 183 RTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + G++ +A++ L P + R G YG T + V+T Sbjct: 224 SQQVLDITGLKREDVTLHVANTYATLTVPESWLDMVRVGGIFYGDTVATKD---YKRVMT 280 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++ I + G V Y L RDS++A +GYADGY S Sbjct: 281 FKSNIAAVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN-----------A 329 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+LGK +M+ + D+TD +++ GD + FG +I ++V SG Sbjct: 330 GHVLINGQRVPVLGKTSMNTVVIDVTDIKNVQPGDEVVFFGKQGVGEITAEEVEDISG 387 >gi|108763995|ref|YP_635273.1| alanine racemase [Myxococcus xanthus DK 1622] gi|108467875|gb|ABF93060.1| alanine racemase [Myxococcus xanthus DK 1622] Length = 409 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 167/394 (42%), Gaps = 47/394 (11%) Query: 8 RLKIDLTALKNNWHSMNALSGN--ARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L++ +AL++N AL G R VV K NAYG G ++ P + V +V + Sbjct: 25 WLELSASALRHNVAVFRALEGQGAPRALGVVLKGNAYGHGLAQVLPV-VHGEVDLLYVIA 83 Query: 65 VEEGVKLRLY------TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 ++ +K+R Y P+ + VL + P + ++ + V++ + L + Sbjct: 84 PQDALKVREYERAQGLGPRQ-VLVLGAVAPDEAVVLAREGVDAVVADRGWADAAAVLRAA 142 Query: 119 G--VSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSH-V 174 + +DTG R G +L+ + S ++ + ++ ++SH A +D + Sbjct: 143 KLERPLRVHVHLDTGLGREGFTLEGLPTESRFLSESRDVLEVVGVLSHFANTEDVTEQGY 202 Query: 175 NSVQLERFR-------TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 Q++ F ++ + ++ +A+S+ L+ P ++ R GISLYG Sbjct: 203 ALAQVDAFEKGLAFLSEQLAPARPLQRHIAASAATLVLPRARYEALRVGISLYGLWPSPE 262 Query: 228 KSHPMQ----------TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 + V++ R +++ AG V YG + + IAV +GY D Sbjct: 263 TRLSARLVLGEVPVLKPVLSWRCRSQVVKWLSAGSYVGYGCTYRCPEPTRIAVLPVGYYD 322 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP +SG + G P+LG++ M+ + D+T + S E + Sbjct: 323 GYPRLVSG-----------KAHVLVNGRRCPVLGRVMMNHLIVDVTRATSDERPVTATLM 371 Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 G D + + +A + T +Y+L+ R+G + Sbjct: 372 GRDGEESVPAESLAGWAQTIHYELVTRLGAHLKR 405 >gi|146743648|gb|ABQ43055.1| alanine racemase [Borrelia burgdorferi] Length = 357 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 78/350 (22%), Positives = 147/350 (42%), Gaps = 23/350 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 21 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K + L++D G NR G+ + + Sbjct: 81 YIKVDKKEIKNLIKFELVPFVADFEYLFSIEKECTLQKNKIKVHLKIDIGMNRYGIKIDD 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L + SHL ++ Q+E+F + + + Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPSTENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ + F + RPG+ LYG P + V++ +++I I+ GE Sbjct: 199 SNSGHIINYKLSPQFNMVRPGLILYGYCQSQKNKKPALNFKPVLSLFSKVIFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 + M++ + +I L ++ G ++I + +D+++ S ++Y+LL IG Sbjct: 308 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIG 357 >gi|171315773|ref|ZP_02905005.1| alanine racemase [Burkholderia ambifaria MEX-5] gi|171099072|gb|EDT43852.1| alanine racemase [Burkholderia ambifaria MEX-5] Length = 378 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 77/377 (20%), Positives = 141/377 (37%), Gaps = 35/377 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +I+ A+ N +L + V K + +G G +A +AGV F V Sbjct: 15 RPAWAEINRGAIAENLAVARSLVRDGVKVYFVCKGDGFGFGAATVARLAADAGVDGFCVG 74 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S EEG +R + + P + + + ++ + + G++ Sbjct: 75 SPEEGAAIRAAGINHEVLLFASTLPEDAARVA---SLGLTVTIQSMESLHAFVRAGIAVD 131 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +++D GF R G + + + + +L I +HL+ D V Q F Sbjct: 132 AFVEIDPGFGRFGFLPSQWQEAFRALAAQSVVRLKGIYTHLSSPGD--DTVTGRQAGVFD 189 Query: 184 TLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV-- 236 ++ + + LASS ++ P ++ PG LYG D+ + Sbjct: 190 AALADARASGFDDVTTMLASSRVMISHPELSYRAVDPGRLLYGALDREWMERVPLRPMLR 249 Query: 237 TAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ARII +++ AG + Y +L R + V IG+ DG V Sbjct: 250 AVRARIIHVQQHPAGSMLGIGYAAPIRLERAMRVGVVPIGFGDGL------------NHV 297 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G ++G +LG+ ++ T+ D+TD +G + + G D I +D++A Sbjct: 298 PPLGHVLVRGVQARVLGRRSLQHTVIDLTDLPDAGIGSVVTLVGEDGAERITIDELADTL 357 Query: 351 GTTNYDLLVRIGTRYAK 367 +LL R + Sbjct: 358 KLPVMELL----PRLVR 370 >gi|226327902|ref|ZP_03803420.1| hypothetical protein PROPEN_01783 [Proteus penneri ATCC 35198] gi|225203606|gb|EEG85960.1| hypothetical protein PROPEN_01783 [Proteus penneri ATCC 35198] Length = 407 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 84/359 (23%), Positives = 143/359 (39%), Gaps = 30/359 (8%) Query: 8 RLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +AL N + +L G+ + AV+K +AYG +AP + VQ VT+ + Sbjct: 44 WIEISRSALDFNVKKVQSLLGDKSSLCAVLKGDAYGHDLSLVAPVMIENNVQCIGVTNNQ 103 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHPYA 125 E ++R Q R+ + + N+ +I ++ + P Sbjct: 104 ELKEVRDLGFQGRLMRVRNATEQEMAQATSYNVEELIGNLDMAKKLDAIAKQQNKVIPIH 163 Query: 126 LQVDTG-FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +++G +R GL + +L L ++ ++ + V L RF+ Sbjct: 164 LALNSGGMSRNGLEVNNKAGLEEAKQIAQLANLKVVGIMSHYPEEDADKV-REDLARFKQ 222 Query: 185 LISH--------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 K + +A++ + P + R G YG S + V+ Sbjct: 223 QSQKVLDVTGLNPKEVTLHMANTFATITVPGSWLDMVRVGGIFYG---DTIASTDYKRVM 279 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I I G V Y L RDS++A +GYADGY S Sbjct: 280 TFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN----------- 328 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+LGK +M+ + DITD +I+ GD + FG +I +++ SG Sbjct: 329 AGHALIGGQRVPVLGKTSMNTVIVDITDLKNIKSGDEVVFFGKQGNAEITAEEIEDISG 387 >gi|219684698|ref|ZP_03539641.1| alanine racemase [Borrelia garinii PBr] gi|219672060|gb|EED29114.1| alanine racemase [Borrelia garinii PBr] Length = 366 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I + F ++++E+ L+ +I + Sbjct: 21 IKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 81 YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDIGMNRYGIRIDS 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASL 196 AL+ N + +L + SHL ++ Q+E+F ++ + + Sbjct: 141 ALEIATYIQNSQFLELEGVCSHLPATENF--ETTQKQIEKFLLVLETLKQKNINPKFVHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + + V+ +++I I+ GE Sbjct: 199 SNSGHIINYKINPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P ++ I I GK Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNQKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I L + G ++I + +D ++ S ++Y+LL IG + Y Sbjct: 308 VCMNLTIVEIPKDLKVRTGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKY 364 >gi|111114981|ref|YP_709599.1| alanine racemase [Borrelia afzelii PKo] gi|216263804|ref|ZP_03435798.1| alanine racemase [Borrelia afzelii ACA-1] gi|110890255|gb|ABH01423.1| alanine racemase [Borrelia afzelii PKo] gi|146743656|gb|ABQ43059.1| alanine racemase [Borrelia afzelii PKo] gi|215979848|gb|EEC20670.1| alanine racemase [Borrelia afzelii ACA-1] Length = 366 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 146/357 (40%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I + F ++++E+ L+ +I + Sbjct: 21 IKNKIGEKEIVATLKGDAYGHGLINIFKFFKAKKINYFGLSNIEDAKTLKKIDKSTKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 81 YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDVGMNRYGIKIDS 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASL 196 AL+ N K +L + SHL ++ + Q+E+F + + + Sbjct: 141 ALEIATYIQNSKFLELEGVCSHLPTTENF--KITQKQIEQFLFFLETLKQKNINPKFVHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + + V+ ++++ I+ GE Sbjct: 199 SNSGHIINYKLNPQFNMVRPGLILYGYCPTLKNKKTTLNFKPVLNLFSKVVFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P ++ I I GK Sbjct: 259 KISYSGTFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNKKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I L +E G ++I + +++++ S ++Y+LL IG + Y Sbjct: 308 VCMNLTIVEIPKDLKVETGSKVEIVSEKLSINEMSKFSKRSHYELLCNIGKYENRKY 364 >gi|178847612|pdb|3CO8|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni gi|178847613|pdb|3CO8|B Chain B, Crystal Structure Of Alanine Racemase From Oenococcus Oeni Length = 380 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 81/377 (21%), Positives = 136/377 (36%), Gaps = 28/377 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R++ ++L N +SG VK NAYG G +++ GV V+ Sbjct: 7 HRSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVS 66 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EG+ +R I +L I I + + +SS+ L K++ Sbjct: 67 VLDEGIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEK-LS 125 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLER 181 L VDTG NR+G+ ++ L + S I +H A +D+P H Q R Sbjct: 126 VNLAVDTGXNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNR 185 Query: 182 FRTLISHYKGIEASL--ASSSGILLGPNYHFQ--LTRPGISLYGGTDKINKSHPMQ---T 234 + LI S + + R G +YG P+ Sbjct: 186 WYELIDGLIXPRYVHVXNSGAAXYHSKELPGCNSIARVGTVVYGVEPSEGVLGPIDKLKP 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V ++ + ++K AGE +SYG + +RD+ I IGY DG+ Sbjct: 246 VFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQDFQL------ 299 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 I G +G+I D + +G + + G + L D+ S Sbjct: 300 ------LIDGQKCRQVGQIAXDQXXVALPHEYP--IGTEVTLIGKSGKYENTLYDLHKHS 351 Query: 351 GTTNYDLLVRIGTRYAK 367 G + + V R + Sbjct: 352 GVPPWKITVAFSDRLKR 368 >gi|323190084|gb|EFZ75362.1| alanine racemase [Escherichia coli RN587/1] Length = 261 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 18/272 (6%) Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLII 161 + + QL + S +++DTG +RLG+ ++A F H + K + Q I+ Sbjct: 1 MHNEEQLAALEE-ASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIV 59 Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221 SH A AD+P QL F T G + S+A+S GILL P HF RPGI LYG Sbjct: 60 SHFARADEPKCGATEKQLAIFNTFCEGKPG-QRSIAASGGILLWPQSHFDWVRPGIILYG 118 Query: 222 GTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 + Q V++ + +I +R+ AGE V YGG RD+ + V A+GY D Sbjct: 119 VSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD 178 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 GYP G + G VPI+G++ MDM D+ + GD + ++ Sbjct: 179 GYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILW 227 Query: 338 GPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G + ++ +A + + Y+L+ R+ +R A Y Sbjct: 228 GEGLPVERIAEMTKVSAYELITRLTSRVAMKY 259 >gi|51598420|ref|YP_072608.1| alanine racemase [Borrelia garinii PBi] gi|51572991|gb|AAU07016.1| alanine racemase [Borrelia garinii PBi] gi|146743654|gb|ABQ43058.1| alanine racemase [Borrelia garinii PBi] Length = 366 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 78/357 (21%), Positives = 146/357 (40%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I + F ++++E+ L+ +I + Sbjct: 21 IKNKIGEKEIVATLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 81 YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECAFQKKKIKVHLKIDIGMNRYGIRIDS 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N + +L I SHL ++ Q+E+F ++ + + Sbjct: 141 ALEIATYIQNSQFLELEGICSHLPATENF--KTTQKQIEKFLLVLETLKQKNINPKFIHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + + V+ +++I I+ GE Sbjct: 199 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P ++ I I GK Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNQKCKIKGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++T+ +I +L + +G ++I + +D ++ S ++Y+LL IG + Y Sbjct: 308 VCMNLTIVEIPKNLKVRIGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKY 364 >gi|146743650|gb|ABQ43056.1| alanine racemase [Borrelia burgdorferi] Length = 352 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 144/347 (41%), Gaps = 23/347 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 19 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKKINYFGLSNIEDAKTLKKIDKNIKILM 78 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + + Sbjct: 79 YIKVDKKEIKNLIKFELVPFVADFEYLFSIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 138 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L + SHL ++ Q+E+F + + + Sbjct: 139 ALEIATYIQNSKFLELEGVCSHLPSTENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 196 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP---MQTVVTAEARIILIRKALAGE 252 ++S I+ + F + RPG+ LYG P + V++ ++II I+ GE Sbjct: 197 SNSGHIINYKLSPQFNMVRPGLILYGYCQSPKNKKPALNFKPVLSLFSKIIFIKNVKKGE 256 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P +S I I GK Sbjct: 257 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNISNDF-----------YFLINNKKCKIRGK 305 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + M++ + +I L ++ G ++I + +D+++ S ++Y+LL Sbjct: 306 VCMNLAIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLC 352 >gi|313677342|ref|YP_004055338.1| alanine racemase [Marivirga tractuosa DSM 4126] gi|312944040|gb|ADR23230.1| alanine racemase [Marivirga tractuosa DSM 4126] Length = 395 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 69/393 (17%), Positives = 147/393 (37%), Gaps = 44/393 (11%) Query: 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + + +A++ N + L+ N +AV+K NAYG G + + P +A V+ V S E Sbjct: 11 ITLSKSAVRQNVRFVRKRLAENVLLSAVLKGNAYGHGIKGMVPLFESANVKHLSVFSTHE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 ++ + ++ G +E + V + Sbjct: 71 AEQVCQVKKKTTEVMIMGWMEDEETEWAIENEVEFYVFEMGRLKAALHYAKTLNKIAKIH 130 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV--QLERFR 183 ++V+TG NR G + + + + + ++ V Q+++++ Sbjct: 131 VEVETGMNRTGFEEEHLEELMQMMKENHEYISFVGLCTHYAGAESITNYLRVVDQIKKYK 190 Query: 184 TLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK---------- 228 + + A S+ + P + R GI LYG Sbjct: 191 KIYDLFVENDLVPKRRHTACSAAAMSYPETQMDMVRIGILLYGFWPSQETFIAYQRSNGH 250 Query: 229 ---------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 HP++ V++ ++I+ +++ GE + YG + T+ IA +GYA G+ Sbjct: 251 GQDGLDRKVRHPLKRVISWRSKIMSVKEVPVGEFIGYGTSYQATKKMKIATVPVGYAYGF 310 Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339 +LS G+ + G V ++ + M++ + ++T+ ++ GD + + G Sbjct: 311 ARSLSNQ-----------GRVIVNGKRVAVISTVNMNLMIINVTECKNVGKGDEVIMIGS 359 Query: 340 ----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 ++ + S NY+LL R+ + Sbjct: 360 NGKVNVTVASFGELSNQLNYELLSRLPMDIPRR 392 >gi|50954713|ref|YP_062001.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951195|gb|AAT88896.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 370 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 139/379 (36%), Gaps = 42/379 (11%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R +DL AL+ N ++ L A T VK +AYG G IA A AG V Sbjct: 8 AEPLPRAVVDLAALRRNVATLTRLIAPAETMLAVKADAYGHGLLPIAEAGVQAGATSLAV 67 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + G+ LR + + + ++ IS+ QL + + + Sbjct: 68 LEISAGLVLRRAGVTVPLLAWLHGTGTDWRAGIENDIQLGISARWQLEAIAAAAADRAAI 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+VDTG +R G + +E + + + + + + D S + L F Sbjct: 128 V-HLKVDTGLSRNGATREEWPALVDAALALQETGVVRLRAAWSHLADASIADDEAALAEF 186 Query: 183 RTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQT 234 R ++ + LA+SS + P F L R GI+ YG + + ++ Sbjct: 187 REAVAEAEARGARFEMLHLAASSAGIRMPEARFALVRFGIAAYGLSPFDDTTGAELGLRP 246 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 V+ EA +I + G + IG+ADG P Sbjct: 247 VMRLEAPVIAVH---------VDGTTHVR-------LGIGFADGVP-----------TLG 279 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALAS 350 + G P++ + D + D + +E GD +FGP + ++ A + Sbjct: 280 LARTSVLLGGRRCPVI-AVEADAMLVDAG-AQRVERGDTAVLFGPGDSGEATAEEYAEWA 337 Query: 351 GTTNYDLLVRIGTRYAKFY 369 GT +++ + R + Y Sbjct: 338 GTIADEMVTGVAARVPRVY 356 >gi|268589404|ref|ZP_06123625.1| alanine racemase [Providencia rettgeri DSM 1131] gi|291315242|gb|EFE55695.1| alanine racemase [Providencia rettgeri DSM 1131] Length = 409 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 139/359 (38%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++I AL N + L G+ + AV+K +AYG + P + VQ VT+ Sbjct: 45 AWIEISRGALDFNIKKVQNLLGDKSSLCAVLKGDAYGHDLSLVTPIMIENNVQCIGVTNN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R + R+ + + +I ++ + + P Sbjct: 105 QELKTVRDLGFKGRLMRVRSATEQEMAQATQYETEELIGNLAMAQRLNAIAKKQNKVIPI 164 Query: 125 ALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +++ N L +S LD ++ I+SH D+ + + ++ Sbjct: 165 HLALNSAGMSRNGLDVSSASGLDEAKQIAELSQLKIVGIMSHYPEEDEAQIRKDLAKFKK 224 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + + G++ +A++ + P + R G YG T N + V+ Sbjct: 225 ESQQVLNVTGLKREDITLHVANTYATITVPESWLDMVRVGGIFYGDTVATND---YKRVM 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDS++A +GYADGY S Sbjct: 282 TLKSNIASVNHYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I G VP+LGK +M+ M D+TD + GD + FG +I ++V SG Sbjct: 331 AGHALINGQTVPVLGKTSMNTVMVDVTDLKYVSPGDEVVFFGKQGHAEITAEEVEDISG 389 >gi|238022778|ref|ZP_04603204.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147] gi|237865981|gb|EEP67117.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147] Length = 410 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 139/375 (37%), Gaps = 28/375 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+ID A N ++ + G + AV+K +AYG E + P + + +TS + Sbjct: 47 WLEIDAAAFGRNLEAVKKMLGGKQKICAVIKGDAYGNSIELLMPQIIKHKIPCVGITSND 106 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYA 125 E +R + + L G+ + F N+ + ++ + G Sbjct: 107 EARVVRASGYKGTVARLRTTTLGEIEDGFQYNIEELFGNLKAAQLADAAAAKRGKKLNIH 166 Query: 126 LQVDTG---FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS-----SHVNSV 177 L ++ G N L L + + I++H D + Sbjct: 167 LALNAGGMDRNGLALDTESGKADALAIAKLPHLNIVGIMTHFPVEDVADVKKGVQRFDEQ 226 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + A+S + P F + RPG LYG + ++ V+ Sbjct: 227 SKWLIQAAKLDRSKLTLHTANSFTTVSVPEGRFDMVRPGALLYG---EPIGGKQLEYVMA 283 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++R+ + + G V Y L RDS +A GY+DGY + Sbjct: 284 FKSRVGSVNRYPKGSTVGYDRTFTLKRDSRLANLPFGYSDGYRRAFTN-----------K 332 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD----DVALASGTT 353 G I+G+ VP++GKI+M+ TM D+TD I+ D + IFG K + ++ + Sbjct: 333 GHVLIRGHKVPVVGKISMNTTMVDVTDFPDIQANDEVVIFGKQGKAEIKQSEIEEIADVL 392 Query: 354 NYDLLVRIGTRYAKF 368 D+ G K Sbjct: 393 FADIYTVWGNSNPKI 407 >gi|224534199|ref|ZP_03674777.1| alanine racemase [Borrelia spielmanii A14S] gi|224514301|gb|EEF84617.1| alanine racemase [Borrelia spielmanii A14S] Length = 372 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 143/351 (40%), Gaps = 23/351 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFFKAKKINYFGLSNIEDAKTLKKIDKSTKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 87 YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDVGMNRYGIKIGS 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L + SHL ++ + Q+E+F + + + Sbjct: 147 ALEIAKYIQNSKFLELEGVCSHLPTTENF--KITQKQIEQFLFFLETLKQKNINPKFIHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + + V+ ++++ I+ GE Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYYPSLKNKKTTLNFKPVLNLFSKVVFIKNVKKGE 264 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P ++ I I GK Sbjct: 265 KISYSGTFQAKEDMQIGIIPIGYFDGIPQNINN-----------NFYFLINNKKCKIRGK 313 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 + M++T+ +I L +E G ++I + +D+++ S + Y+LL IG Sbjct: 314 VCMNLTIVEIPKDLKVETGLKVEIVSEKLSIDEMSKFSKRSPYELLCNIGK 364 >gi|219685888|ref|ZP_03540693.1| alanine racemase [Borrelia garinii Far04] gi|219672556|gb|EED29590.1| alanine racemase [Borrelia garinii Far04] Length = 366 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 76/357 (21%), Positives = 142/357 (39%), Gaps = 23/357 (6%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G +K +AYG G I + F ++++E+ L+ +I + Sbjct: 21 IKNKIGEKEIVVTLKGDAYGHGLINIFKFFKEKKINYFGLSNIEDAKTLKKIDKNIKILM 80 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P ++ L K L++D G NR G+ + Sbjct: 81 YIKVDKKEIKNLIKLELLPFVADFEYLFLIEKECALQKKKIKVHLKIDIGMNRYGIRIDS 140 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS-----HYKGIEASL 196 AL+ N + +L I SHL ++ Q+E+F ++ + + Sbjct: 141 ALEIATYIQNSQFLELEGICSHLPATENF--KTTQKQIEKFLLVLETLKQKNINPKFVHI 198 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAEARIILIRKALAGE 252 ++S I+ N F + RPG+ LYG + + V+ +++I I+ GE Sbjct: 199 SNSGHIINYKINPQFNMVRPGLILYGYCQSLKNKKTTLNFKPVLNLFSKVIFIKNVKKGE 258 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 +SY G + D I + IGY DG P ++ I I GK Sbjct: 259 KISYSGIFQAKEDMKIGIIPIGYFDGIPQNINN-----------NFYFLINNQKCKIRGK 307 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + M++ + +I L + G ++I + +D ++ S ++Y+LL IG + Y Sbjct: 308 VCMNLAIVEIPKDLKVRTGSKVEIVSEKLSIDKMSKFSKRSHYELLCNIGKYEKRKY 364 >gi|291541767|emb|CBL14877.1| alanine racemase [Ruminococcus bromii L2-63] Length = 394 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 149/396 (37%), Gaps = 52/396 (13%) Query: 9 LKIDLTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ++IDL + N ++ + + AV+K + YG G ++A +Y G+ F V+S+EE Sbjct: 6 VEIDLDKIGANARAITQKYSDYKYFIAVLKGDGYGHGM-EVANEMYKNGINYFAVSSLEE 64 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 R A + L+ +H + + + + + ++ + LQ Sbjct: 65 AQSFRKVNKDAPLLCLHPVHLSRIE-EAKRLNLTIAVNELDYLKRLLDLNIDCNFKVHLQ 123 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTGFNRLG + + + N L I H A A Q+ F+ L S Sbjct: 124 IDTGFNRLGFKDKNEVKTAVDMINGSNFVLEGIYQHFATA-GIFDPHWDEQVRNFKELTS 182 Query: 188 --HYKGIEASLASSSGILL-GPNYHFQL-TRPGISLYGGTDKINK--------------- 228 K I SS +L P F R GI++YG + Sbjct: 183 LIDLKKIPIVHMGSSVSMLTHPKQPFTTGVRMGIAIYGYNVAPDSLSNSPKDKLRKMRNN 242 Query: 229 ---------------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273 +Q + + RI+ ++K GE Y D ++A+ + Sbjct: 243 YFIKKYNISETYFDVKIDLQPAMKMKTRILQLKKVNKGEWFGYNASYTADEDIILAILPV 302 Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 GY +G + I G P++G++ M+MT + S+++ D Sbjct: 303 GYNNGIGHANHNR------------QVVINGKKYPVVGEMCMNMTAVKV--DSSVKIDDE 348 Query: 334 IQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + + G I + +SG N + LV IG +FY Sbjct: 349 VTLLGDGITVGMFGRSSGMGNAEALVNIGKNNPRFY 384 >gi|296161155|ref|ZP_06843965.1| alanine racemase [Burkholderia sp. Ch1-1] gi|295888678|gb|EFG68486.1| alanine racemase [Burkholderia sp. Ch1-1] Length = 390 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 131/358 (36%), Gaps = 31/358 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++D A+ N G+ + V K + +G G K+A AGV F V Sbjct: 19 RPSWAELDYGAIAANLAVAREQVGHATKIYFVCKGDGFGFGAAKVARLAAQAGVDGFCVG 78 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S EEGV +R I + P + L ++ + GV+ Sbjct: 79 SPEEGVAIRRAGIDRDILLFASTLPEDAAQVAALGLTV---TIQSQESLHAFIDAGVAVD 135 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182 L++D GF R G + ++ +L + +HL+ ++ V Q F Sbjct: 136 AFLEIDPGFGRFGFLPSQWQAAFAALRDQSTVRLKGVYTHLSSPEN--DDVTRQQAGVFD 193 Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV-- 236 + + I LASS +L P+ +Q PG LYG D + Sbjct: 194 AALADARAAGFDNITTMLASSRVMLAHPHLAYQAVDPGRLLYGALDAEWMVRAPLRPMLR 253 Query: 237 TAEARIILIRKALAGEL--VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 RII +++ AG + Y +L R I V IG+ DG V Sbjct: 254 AVRGRIIHVQEHPAGSTLGIGYAEPIRLERGVRIGVVPIGFWDGL------------NHV 301 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G+ + G ILG+ + T+ DIT+ G + + G D I +D++A Sbjct: 302 PPLGRVLVHGQAARILGRRSFQHTVIDITEIAQARTGSVVTLLGQDGDQSITIDEMAE 359 >gi|326442666|ref|ZP_08217400.1| alanine racemase [Streptomyces clavuligerus ATCC 27064] Length = 330 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 129/348 (37%), Gaps = 35/348 (10%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 + A AVVK NAYG G +A A AG + V ++ EG+ LR P+ARI VL Sbjct: 1 MVDGAELWAVVKGNAYGHGAVPVAGAALEAGARALCVATLGEGLALRERFPRARIVVLGP 60 Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145 + PG L V L S + Y ++V+ G NR G Sbjct: 61 VGPGSVPAASRAGLECVAHDDASLEALSG------AVEYHIKVNLGLNRYGFD------- 107 Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG 205 ++ A D V ++QL RF + +SS L Sbjct: 108 RIPDRLREQPVGVFGQFSHAHVD---LEVTALQLARFLEQCEAVPRATRHVCNSSAALSL 164 Query: 206 PNYHFQLTRPGISLYGGTDKINKS--HPMQTVVTAEARIILIRKALAGELVSYGGQKKLT 263 P R G +L G + N S P++ ++ + + +R AG V Y G ++T Sbjct: 165 PAARLDAVRSGSALLGVSLMTNPSSRLPLRPALSWISCLAQVRNLPAGAAVGYEGAHRVT 224 Query: 264 RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT 323 R ++ V +GY DG+ L +G + ++G ++MD + Sbjct: 225 RPTVTGVVPVGYGDGFVSRL------------VGTTVLVGDEPATVIGSVSMDALTVALP 272 Query: 324 DSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT---RYAKF 368 +G + + G + ++ + N++L + R + Sbjct: 273 RRFP--IGTPVTLIGDGLPMESHLRFASMANWELCTGLSNDPLRVHRR 318 >gi|332982771|ref|YP_004464212.1| alanine racemase [Mahella australiensis 50-1 BON] gi|332700449|gb|AEE97390.1| alanine racemase [Mahella australiensis 50-1 BON] Length = 366 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 143/379 (37%), Gaps = 38/379 (10%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L++D A+ +N ++ G AVVK NAYG G +++ L +AGV+ F V ++EG Sbjct: 6 LEVDKRAIIDNLETVRKEVG-VSVMAVVKGNAYGHGAVEVSATLADAGVEWFGVEFLDEG 64 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKI-IFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V+LR + RI G + + ++ P + ++ + + + L Sbjct: 65 VRLRESGIEGRILCFTGPVDKDDCRAFIEYDITPAMYNLDAAAMLNDVAEEEDIMFKVHL 124 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 + DTG R G + E + + +H A A +QLERF + Sbjct: 125 KFDTGMGRFGFTYDELDGVIDRLKAFEHLEYEGAFTHFAAAFAKKPDYTLLQLERFNKCM 184 Query: 187 S--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 GI+ + ++ + P + R G +L+G N+S ++ +A Sbjct: 185 DKLETGGIKVQIRHAANSVAAMDFPQARLDMVRVGGALFGTAMFKNRSVKLKKTALLKAI 244 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK-- 299 ++ +R G + YG + ++ I V GY +G + + + Sbjct: 245 LMDVRDMPKGAYIGYGCTYRTSKPMRIGVIPFGYFEGLKVQRRNYAFHFLDLLRILYHDI 304 Query: 300 ---------GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALAS 350 F G + ILG+I + + + D++ GD + + I LDD Sbjct: 305 MDYLRPVPIVFKDGRPLRILGRIGLQLAVVDLSGV-DAHPGDEVSVAIDPIYLDD----- 358 Query: 351 GTTNYDLLVRIGTRYAKFY 369 T + Y Sbjct: 359 -T------------VPRVY 364 >gi|322805978|emb|CBZ03545.1| alanine racemase [Clostridium botulinum H04402 065] Length = 256 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 26/253 (10%) Query: 132 FNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 RLG E+L+ + ++ + SH + +D+ + Q + F+ Sbjct: 1 MGRLGFDPTVESLEEIKRIQDLSNIKIEGLSSHFSSSDENDKSYSEYQFKIFQNFRKKLI 60 Query: 191 GIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARI 242 GI +++S+ I+ P+ + R GI LYG + ++ ++ V+T +A I Sbjct: 61 GINMKIPIYHMSNSAAIIDLPSTYLDAVRAGIILYGYYPSMEVNKENLHIKQVMTLKANI 120 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + I+ +G+ V Y + K R S IA+ +GY DGY LS GK I Sbjct: 121 VHIKTIDSGKYVGYNRKFKTKRKSKIAILPLGYGDGYTRFLSNR-----------GKVII 169 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD------IKLDDVALASGTTNYD 356 G PI+G I MD M D+TD ++VGD + I G D +D+A G T+ + Sbjct: 170 NGQYAPIVGNICMDQCMIDVTDIKEVKVGDEVIIIGKDNINNLRYDAEDIASKVGMTSGE 229 Query: 357 LLVRIGTRYAKFY 369 ++ I R + Y Sbjct: 230 IMSIISKRVPRVY 242 >gi|308234831|ref|ZP_07665568.1| alanine racemase [Gardnerella vaginalis ATCC 14018] Length = 356 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 36/335 (10%) Query: 71 LRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS----HPYA 125 LR + R +L + + D + SV L + S Sbjct: 1 LRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALAAKSVGAAARIH 60 Query: 126 LQVDTGFNRLGLSLQ---EALDFTHNSFNKKLGQLSLIISHLACADDPSSH----VNSVQ 178 ++VDTGF R G + +AL+ ++ L ++ SHLA AD P Q Sbjct: 61 VKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWSHLAVADCPDVPEFVSSTDRQ 120 Query: 179 LERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 +E+F LA+++ L P F+L RPGI LYG P Sbjct: 121 IEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPVMGVPQT 180 Query: 234 TV----VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 +T +A++ ++ AG +SYG ++ A+ +GYADG SG D + Sbjct: 181 YDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYADGILRAASGYDMQ 240 Query: 290 HSPSV-FLGGKGFI---KGYM-VPILGKITMDMTMFDI---TDSLSIEVGDYIQIFGP-- 339 S V GG + G + + G++ MD + D+ L ++ GD +++FGP Sbjct: 241 GSRHVNKPGGPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELGVKEGDTVRLFGPGR 300 Query: 340 -----DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + DD A A+GT +Y+++ IG R + Y Sbjct: 301 GIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLY 335 >gi|254552529|ref|ZP_05142976.1| alanine racemase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 277 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 10/275 (3%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+++N + +G+A+ AVVK + YG G ++A AG + V +V+E + Sbjct: 2 VDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALA 61 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQVD 129 LR A + ++ +SS+ Q + G + ++VD Sbjct: 62 LRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD 121 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSL---IISHLACADDPSSHVNSVQLERFRTLI 186 TG NR G+ + ++SH+ AD P +N VQ +RF + Sbjct: 122 TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFL 181 Query: 187 SHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK-SHPMQTVVTAEA 240 + + A L++SS + P+ F L RPGI++YG + + +T + Sbjct: 182 AQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKC 241 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275 + L++ AGE VSYG RD+ +A+ IGY Sbjct: 242 AVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGY 276 >gi|116617542|ref|YP_817913.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096389|gb|ABJ61540.1| alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 373 Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 156/383 (40%), Gaps = 28/383 (7%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M+ N R +++ +A+ +N + + AV+K NA+ G ++A AG Sbjct: 1 MNYNAPHRHAVIELSQSAVVHNLKVIKENTHAKEIMAVLKANAFSHGLPEMASLSITAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL-M 116 F + ++E + LR I VL P ++ + N+ S+ + ++ Sbjct: 61 TRFGMAMLDEALILRDLGYIQPIDVLGLTDPRYARLAAERNITLAFSTKESIKAAAEQLA 120 Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 G++ +L VDTG NR+G ++ + + + +H A AD P+ Sbjct: 121 GTGLTLKVSLPVDTGLNRIGFKSREDLVAAIQEVSAQDTLIFQSMWTHFATADTPNVDYV 180 Query: 176 SVQLERFRTLISH--YKGIEASLASSSGILLGPN-YHFQLTRPGISLYGGT---DKINKS 229 Q+ ++ L + E A++ P + + R GI L+G ++ Sbjct: 181 DFQISEWQRLTHDLPVEPNEKHFANTGIATWYPEKINTDIVRLGIGLFGINGSVPIMSMP 240 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + ++ +A+++ + G+ V YG + D + IG++DGYP SG+ + Sbjct: 241 FELIPALSLKAKVVNSKPLKKGDAVGYGAEYHAPNDGYLITIPIGHSDGYPFNGSGMRAL 300 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDD 345 + G + I+G + MD +M +T+ + VG + + G I + D Sbjct: 301 VA-----------DGQIGHIVGGVAMDQSMILVTN--PVAVGTTVTLIGRVGDQSITMQD 347 Query: 346 VALASGTTNYDLLVRIGTRYAKF 368 +A + ++ L+ R + Sbjct: 348 LAEHTQSSIVALMNDFAPRLQRI 370 >gi|103486714|ref|YP_616275.1| alanine racemase [Sphingopyxis alaskensis RB2256] gi|98976791|gb|ABF52942.1| alanine racemase [Sphingopyxis alaskensis RB2256] Length = 348 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 181/363 (49%), Gaps = 23/363 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 LRL++D AL NW + G A A +K + YGLG + L AG +DFFV + Sbjct: 6 PPLRLRLDSDALIANWRWLAGQGGAAACGAAIKADGYGLGARWVMERLAAAGCRDFFVAT 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E L + VL+G+ PV++SV Q+ + G P Sbjct: 66 WAEAAALMPLPQGISVSVLHGVGAADMVAARLLPARPVLNSVEQVQRW---RDSGEGRPC 122 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VDTG NRLGL ++E + +++SHLA AD+ N+ QL FR+ Sbjct: 123 DVMVDTGMNRLGLRVEEV-----MGGALDGLAIDILLSHLASADEDCGQ-NAAQLASFRS 176 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 L + SLA+S+GI LG +Y F LTRPGI+LYGGT + ++ VV E R++ Sbjct: 177 LRETIRARRYSLANSAGICLGADYAFDLTRPGIALYGGTPRREAQGHIRQVVYPETRVLQ 236 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 +R+ AGE V YG + D+ +AV +GYADGY +G +G Sbjct: 237 LREVRAGESVGYGATWTASTDTRVAVTNMGYADGYLRCHAGSGGATW-----------RG 285 Query: 305 YMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +P++G+++MD+T FD + + + D++ I + L A ASG + Y+LL +G+R Sbjct: 286 QSLPLIGRVSMDLTAFDASSTEGLREDDWLAI---EYDLPTRAAASGLSQYELLTGLGSR 342 Query: 365 YAK 367 + + Sbjct: 343 FGR 345 >gi|115361255|ref|YP_778392.1| alanine racemase [Burkholderia ambifaria AMMD] gi|115286583|gb|ABI92058.1| alanine racemase [Burkholderia ambifaria AMMD] Length = 401 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 E +I+ A+ N +L + V K + +G G +A +A V F V Sbjct: 38 ESAWAEINRGAIAENLAVARSLVRDGVKIYFVCKGDGFGFGAATVARLAADARVDGFCVG 97 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S EEG +R + + P + + + ++ + + G++ Sbjct: 98 SPEEGAAIRAAGINHEVLLFASTLPEDAARVA---SLGLTVTIQSMESLHAFVYAGIAVD 154 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182 +++D GF R G + + + + +L I +HL+ V Q F Sbjct: 155 AFVEIDPGFGRFGFLPSQWQEAFRALAAQSVVRLKGIYTHLSSP--GVDTVTGRQAGVFD 212 Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV-- 236 + + + LASS ++ P ++ PG LYG D+ + Sbjct: 213 AALADARAAGFDDLTTMLASSRVMIAHPELSYRAVDPGRLLYGALDREWMERVPLQPMLR 272 Query: 237 TAEARIILIRKALAGE--LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 ARII +++ AG + Y +L R + V IG+ DG V Sbjct: 273 AVRARIIHVQQHPAGSMLGIGYAAPIRLERAMRVGVVPIGFGDGL------------NHV 320 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALAS 350 G ++G +LG+ ++ T+ D+TD +G + + G D I +D++A Sbjct: 321 PPLGHVLVRGVQARVLGRRSLQHTVIDLTDLPDAGIGSVVTLVGEDGGKRITIDELADTL 380 Query: 351 GTTNYDLLVRIGTRYAK 367 +LL R + Sbjct: 381 KLPVMELL----PRLVR 393 >gi|46202740|ref|ZP_00052682.2| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1] Length = 228 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 12/237 (5%) Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191 NRLGL ++EAL + + + G ++SHL A+ P + + Q E F + + + Sbjct: 1 MNRLGLRVEEALALSGDPVIARAGIDL-VMSHLVSAEQPDDPLTAHQAEAFARVRAAFPH 59 Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAG 251 + ASLA+SSG L + L RPG L+GG + +++PM+ VV EA I+ +R+ AG Sbjct: 60 LRASLANSSGTCLADDARHDLLRPGYCLFGGNPEPGRANPMRPVVRLEATILQVRQVEAG 119 Query: 252 ELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILG 311 E Y + + +A ++GYADGYP + S G + G + P+LG Sbjct: 120 ETCGYNARWRAPAPRRLATLSLGYADGYPRSASNS-----------GHALVGGVLCPMLG 168 Query: 312 KITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 I+MD+ + D+T + G + G + +D V A+GT Y++L +G+RY + Sbjct: 169 LISMDLIILDVTHAPEARRGGTATLIGDSLDIDTVGQAAGTIGYEILTGLGSRYVRI 225 >gi|69250348|ref|ZP_00605138.1| Alanine racemase [Enterococcus faecium DO] gi|68193971|gb|EAN08535.1| Alanine racemase [Enterococcus faecium DO] Length = 300 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 119/312 (38%), Gaps = 27/312 (8%) Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---SHPYALQ 127 +R I +L + + +L + L + ++ L+ Sbjct: 1 MREAGFTQPILILNMVPYDALTVAVAHDLSVTAGTREWLQAAAAVLEKSKLETPLSIHLK 60 Query: 128 VDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 DTG R+G +E + ++ + + +H + AD ++Q ERF ++ Sbjct: 61 ADTGMGRIGFCTPEEVKEAAAFIKESRVLEWEGLFTHFSTADQADDTYWNLQKERFIEVL 120 Query: 187 SHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEAR 241 + + +S+ L + R G+++YG + + +P+Q + + Sbjct: 121 KKLPELPRYVHVSNSATALWHDETIGNMIRYGVAMYGLNPSGHALPEVYPLQPALELVSE 180 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I ++K AGE + YG I IGYADG+P + G Sbjct: 181 LIQVKKLPAGEGIGYGETYITPEAEWIGTIPIGYADGWPRKMQGFSL------------L 228 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDL 357 ++G +G++ MD M + + G + + G +I + D+A GT +Y++ Sbjct: 229 VEGNYCETIGRVCMDQLMIRLPQEFPV--GTKVTLIGKNADKEITMQDIADQLGTIHYEV 286 Query: 358 LVRIGTRYAKFY 369 +G R + Y Sbjct: 287 ACGLGQRIPREY 298 >gi|325273199|ref|ZP_08139485.1| alanine racemase [Pseudomonas sp. TJI-51] gi|324101664|gb|EGB99224.1| alanine racemase [Pseudomonas sp. TJI-51] Length = 225 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 16/235 (6%) Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLA 197 ++ + +++SH A AD+ + + Q+ F E SL Sbjct: 1 HPKDYHEAYQRLLASGKVARIVLMSHFARADELDADATAQQIAVFEA-ARQGLAAECSLR 59 Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKI---NKSHPMQTVVTAEARIILIRKALAGELV 254 +S G+L P RPG+ LYG T ++ +Q V+T ++R+I +R+ AG+ V Sbjct: 60 NSPGVLGWPQAPSDWVRPGLMLYGATPFEVAQAEAARLQPVMTLQSRVISVRELPAGQPV 119 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314 YG + R + + V A+GYADGYP G + G P++G+++ Sbjct: 120 GYGAKFVSPRPTRVGVVAMGYADGYPRQAPN-----------GTPVLVAGKRAPLIGRVS 168 Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 MDM D+TD VG ++++G + +VA +GT Y + + R Y Sbjct: 169 MDMLSIDLTDVPDATVGSPVELWGKQVLASEVAAQAGTIPYQIFCNL-KRVPLDY 222 >gi|261322850|ref|ZP_05962047.1| alanine racemase [Brucella neotomae 5K33] gi|261298830|gb|EEY02327.1| alanine racemase [Brucella neotomae 5K33] Length = 314 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 146/281 (51%), Gaps = 15/281 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS-------------HPMQ 233 + + A+LA+S G LG Y+F L RPGI+LYG + H + Sbjct: 201 ARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHENKKPKHSIL 260 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIG 274 V+T AR+I +R G V YGG IA A+G Sbjct: 261 PVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVG 301 >gi|91779715|ref|YP_554923.1| alanine racemase [Burkholderia xenovorans LB400] gi|91692375|gb|ABE35573.1| Alanine racemase [Burkholderia xenovorans LB400] Length = 390 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 132/358 (36%), Gaps = 31/358 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++D A+ N G + V K + +G G K+A AGV F V Sbjct: 19 RPSWAELDYGAVAANLAVAREQVGRATKIYFVCKGDGFGFGAAKVARLAAQAGVDGFCVG 78 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 S EEGV +R I + P + L ++ ++ GV+ Sbjct: 79 SPEEGVTIRRAGIDRDILLFASTLPEDAAQVAALGLTV---TIQSRESLHAFINAGVAVD 135 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF- 182 L++D GF R G + ++ +L + +HL+ + V Q F Sbjct: 136 AFLEIDPGFGRFGFLPSQWQAAFAALRDQSTVRLKGVYTHLSSPES--EDVTRQQAGVFD 193 Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV-- 236 + + + LASS +L P+ +Q PG LYG D + + Sbjct: 194 AALADARAAGFDNLTTMLASSRVMLAHPHLAYQAVDPGRLLYGALDADWMARAPLRPMLR 253 Query: 237 TAEARIILIRKALAGEL--VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 RII +++ AG + Y +L R I V IG+ DG V Sbjct: 254 AVRGRIIHVQEHPAGATLGIGYAEPIRLERGVRIGVVPIGFWDGL------------NHV 301 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G+ + G ILG+ + T+ DIT+ + G + + G D I +D++A Sbjct: 302 PPLGRVLVHGQPARILGRRSFQHTVIDITEIAAARTGSVVTLLGQDGDQSITIDEMAE 359 >gi|261210961|ref|ZP_05925251.1| alanine racemase [Vibrio sp. RC341] gi|260839936|gb|EEX66536.1| alanine racemase [Vibrio sp. RC341] Length = 335 Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 126/348 (36%), Gaps = 31/348 (8%) Query: 37 KDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96 K +AYG G + P + G+ V S E +R + + + + + D Sbjct: 2 KADAYGNGIRGLMPTIIAQGIPCVGVASNAEARAVRESGFKGELMRVRSASLSEMSAVLD 61 Query: 97 TNLIPVISSVPQLTFYSKLMS-CGVSHPYALQ-VDTGFNRLGLSL------QEALDFTHN 148 N+ +I + Q + L G + + D G R G+ + +EAL Sbjct: 62 LNIEELIGTHQQAMELADLAKKTGKTIKVHMALNDGGMGRNGIDMTTEAGKKEALSIATQ 121 Query: 149 SFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLISHYKGIEASLASSSGILLG 205 +G ++ + AD+ + + I +A+S L Sbjct: 122 PSLNIVGMMTHFPN--YNADEVRTKLAKFKESSAWLIEQSNLKREDITLHVANSYTALNV 179 Query: 206 PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265 P + RPG LYG + ++V+ + R+ + G V Y +RD Sbjct: 180 PEAQLDMVRPGGVLYGDLPTNPE---YPSIVSFKTRVASLHHVPKGSTVGYDSTFTTSRD 236 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 S++A +GY+DGYP + + G ++G +M+ T+ D+TD Sbjct: 237 SVLANLPVGYSDGYPRKMGN-----------KADVLVNGQRAKVVGVTSMNTTVVDVTDI 285 Query: 326 LSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + G + ++G I + ++ + +L G +FY Sbjct: 286 KGVLPGQEVALYGQQQKQSIAVSEMENNAELIFPELYTLWGNSNPRFY 333 >gi|332654258|ref|ZP_08420002.1| alanine racemase [Ruminococcaceae bacterium D16] gi|332517344|gb|EGJ46949.1| alanine racemase [Ruminococcaceae bacterium D16] Length = 400 Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 139/380 (36%), Gaps = 36/380 (9%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67 L +D+ ++ N ++ A+ V+KDNAYGLG E + + + V V E Sbjct: 38 LSVDMKRVRRNVATVLEELQGAQLIPVLKDNAYGLGLEAMGHVMEEFPQITTLAVAQVGE 97 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTN-LIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G LR I +L G+ + + + + V S G + Sbjct: 98 GAALRQAGITREILILGGVPAHLLRAAVELDLTLSVGRLELLPVLALLGQSAGRRVKIQI 157 Query: 127 QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++TG NR G+ E + + + AD + Q E F Sbjct: 158 KIETGLNRTGVMPGAELAHLLEEWRSARNHFQIMGAFSH-FADLEDTERTRQQYELFLEG 216 Query: 186 ISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + + +++S+ P Y R G LY + + T Sbjct: 217 VEQLQAGGMEIPLRHISASAAHEQFPQYRLDGVRIGRRLYMDHP-TQPTGRVSETATWRT 275 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 I +R AG + YGG+ L RDS +A A+GY DG L V + G Sbjct: 276 WITGLRTLQAGSPLGYGGKVFLERDSTVATIAVGYGDGLSEEL----------VRVHGPV 325 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD-----IKLDDVALASGTTNY 355 + G ++ MD T+ D+T VGD + +FG D + +VAL G Sbjct: 326 LVGGERARLM-ACCMDQTLVDVTGIP-CRVGDPVTLFGWDEQGNLLASQEVALLVG---- 379 Query: 356 D-----LLVRIGTRYAKFYT 370 + L ++ R A+ Y+ Sbjct: 380 EDEGCGLTAQLSPRVARIYS 399 >gi|318081809|ref|ZP_07989118.1| alanine racemase [Streptomyces sp. SA3_actF] Length = 285 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 28/260 (10%) Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQLER 181 L+ DTG R G + N+ + L ++ + SH ACAD+P + QL Sbjct: 34 HLKADTGLGRNGCQPADWPALVGNALALQAEGLVRVVGLWSHFACADEPGHPSIAAQLTL 93 Query: 182 FRTL--ISHYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPM 232 F + ++ G+ +A+S L P H+ L RPGI++YG + + + Sbjct: 94 FEEMTGLAARLGVRAEVRHIANSPATLSLPESHYDLVRPGIAMYGLSPSPTMGTHTDFGL 153 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V+ A + L+++ G VSYG D+ + + +GY DG P SG Sbjct: 154 RPVMRLVAPLALVKRVPGGHGVSYGHLYVTPGDTTLGLVPLGYGDGIPRHASGS------ 207 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVAL 348 G + G + G+I MD + D+ G +FGP + +D A Sbjct: 208 -----GPVLVNGKWHTVAGRIAMDQFVVDLGGDTPA-PGSEAVLFGPGDRGEPSAEDWAR 261 Query: 349 ASGTTNYDLLVRIGTRYAKF 368 A+ + Y+++ RIG R + Sbjct: 262 AADSIVYEIVTRIGARVPRV 281 >gi|213648187|ref|ZP_03378240.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 295 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%) Query: 69 VKLRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYAL 126 + LR A + +L G+ P + P+++SV Q +T+ + + P + Sbjct: 1 MALRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLI 60 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q+D+G +RLG++ ++ + IISHLA AD P +N Q + Sbjct: 61 QLDSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAK 120 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 121 KAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQ 179 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 G + YG TR IA + GYADG P L +G Sbjct: 180 DVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL-----------RPPAGVCWRGVR 228 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 +P+LG++ MD M D + + GD ++ G L++VA A T Y+++ R+G R+ Sbjct: 229 LPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 287 Query: 367 KF 368 + Sbjct: 288 RI 289 >gi|213419244|ref|ZP_03352310.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 234 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 4/233 (1%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 G + S+A+S GILL P HF RPGI LYG + +K Sbjct: 182 CQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQP 233 >gi|270159739|ref|ZP_06188395.1| alanine racemase [Legionella longbeachae D-4968] gi|269988078|gb|EEZ94333.1| alanine racemase [Legionella longbeachae D-4968] Length = 861 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 83/406 (20%), Positives = 142/406 (34%), Gaps = 54/406 (13%) Query: 11 IDLTALKNNWHSM---NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 I+ A+K N ++ +++ V+K N YGLG + ++ AG+ V ++E Sbjct: 458 INTKAIKENIKNIISFGKQCSHSKIIGVIKSNGYGLGSKLVSDLAIEAGIDFLAVAKLQE 517 Query: 68 GVKLRLYTP---------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + LR +A + + + + + S + Sbjct: 518 AIALRNSGIPSTVRLMTFEAPMIYDLSTYAANQIEVIIPSSKNAASINMIAKWLQNKHRV 577 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-------------GQLSLIISHLA 165 + VDTG R G D + +K L+ Sbjct: 578 LGKLKVHIMVDTGLRRDGGYESNIPDSVMETISKLQLLDPNQVEFAGLSTHLACYRCTDY 637 Query: 166 CADDPSSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQ---------- 211 D+ + ++Q RF +I I LL + Q Sbjct: 638 NGDEIIN-FRALQFHRFEKVIKFLFSQGVQIPLIHIGGGLALLAEKWPLQFEKFLKEFNV 696 Query: 212 --LTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD- 265 TR G LYG + + ++ VV + ++ + GE VSYGG + +D Sbjct: 697 GFYTRVGHGLYGMELEKDLHLDSPRLRQVVKMDLQVRNVFYVEEGEPVSYGGYWRAPKDG 756 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 + IA A G+A+G P T G I + PI+GKI M+ M ++ Sbjct: 757 AWIATLAGGWAEGVPRTAQ-----TLGEWQHGMMVCINNHQYPIVGKINMNAMMVNLGSL 811 Query: 326 LSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 ++ GD IFG + KL+D+A SG ++V + T + Sbjct: 812 TKVKPGDRAIIFGWSDHEPKLNDLAQLSGQIAPSIMVNVPTSMPRV 857 >gi|301167975|emb|CBW27561.1| alanine racemase [Bacteriovorax marinus SJ] Length = 375 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 148/382 (38%), Gaps = 37/382 (9%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA-LYNAGVQDFFVTSVEEGV 69 I L+NN+ + + + + +VK NAYG G I + G+ +F S+ E + Sbjct: 9 ISFEKLENNYKKLKEICVDNKIIFMVKANAYGHGVIPIVRHSVEKLGITEFGCASLGEAL 68 Query: 70 KLRLYTPQARIFVLYGIHPG----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 LR + + I+ I + S + + P Sbjct: 69 LLREELYDLEFEIYVFSDVQVELRECAEIYLNRRIIPVISNRDDLDFILNSREFENFPLF 128 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQLERFR 183 ++ +TG NRLGL + + + + + +++HL+ + + N +Q E F Sbjct: 129 IKFNTGMNRLGLEMDKVDEVIRSIRVSGRKSIYHLMTHLSSSSLPIKKNKRNIIQFENFE 188 Query: 184 TLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI----NKSHPMQT 234 + + S+A+S I G RPG+ +YG + + + S Sbjct: 189 KIKKAFSDAGIEVERTSIANSGAIEQGAGLGETHVRPGLMMYGPSSMLPQYSDLSLWSGE 248 Query: 235 VVTA-EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +++ E +I I G+ V YG ++ +A+ A+GY DG+ + Sbjct: 249 IISKLETYVISIFDVEKGQPVGYGATPCPSKGK-VAIVALGYGDGF------------TT 295 Query: 294 VFLGGKGFIKGYMVPILGKITMDM--TMFDITDSLSIEVGDYIQIFGPDIKLDDVAL--- 348 ++G + K ++G++ MDM FD ++VGD ++ D + A Sbjct: 296 RYIGTHLYHKDIKGKVVGRVNMDMAQVFFDENSLPDLKVGDSFTLW--DHSAERFAEFCK 353 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 + Y++ + I R K Y+ Sbjct: 354 EAKIIPYEVFIGITQRVPKIYS 375 >gi|320094525|ref|ZP_08026295.1| alanine racemase [Actinomyces sp. oral taxon 178 str. F0338] gi|319978541|gb|EFW10114.1| alanine racemase [Actinomyces sp. oral taxon 178 str. F0338] Length = 360 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 121/342 (35%), Gaps = 30/342 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID A+ N + A + A+ AVVK NAYG G +A +G V + E V+ Sbjct: 18 IDHGAIARNLRVLRAAAPAAKQMAVVKANAYGHGLLPVALTALASGSDWLGVAQLPEAVE 77 Query: 71 LRL----YTPQ---ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 LR A + + +S L S G Sbjct: 78 LREGLDRAGVDRASAPVLAWITTPGSDFAGAVRAGIDLSVSWTWVLDAISAAARAVGRPA 137 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG---QLSLIISHLACADDPSS---HVNS 176 +++DTG +R G +L + + ++ SHL+ DDPS + Sbjct: 138 RVHVKIDTGMSRAGSTLADLPALASALAAAQADGLVEVVGAWSHLSRGDDPSEGGLASTA 197 Query: 177 VQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---- 227 + F + + + LA+++GIL P H+ + R GI LYG + Sbjct: 198 SHVGIFERGLRVLGEAGVRPAIRHLAATAGILWHPETHYDMVRAGIGLYGLSPDPAVADS 257 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + ++ +T A + ++ G VSYGG + + +GY DG + S Sbjct: 258 RELGLRPAMTLRAPLTSVKVIERGAPVSYGGTWRAPTRRWAGLVPLGYGDGILRSASNAA 317 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE 329 GG G++ MD + D+ + Sbjct: 318 PV--VVRGPGGDV-----PARCAGRVCMDQFVIDLGPAGGAA 352 >gi|289165490|ref|YP_003455628.1| alanine racemase [Legionella longbeachae NSW150] gi|288858663|emb|CBJ12558.1| putative alanine racemase [Legionella longbeachae NSW150] Length = 861 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 83/406 (20%), Positives = 142/406 (34%), Gaps = 54/406 (13%) Query: 11 IDLTALKNNWHSM---NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 I+ A+K N ++ +++ V+K N YGLG + ++ AG+ V ++E Sbjct: 458 INTKAIKENIKNIISFGKQCSHSKIIGVIKSNGYGLGSKLVSDLAIEAGIDFLAVAKLQE 517 Query: 68 GVKLRLYTP---------QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + LR +A + + + + + S + Sbjct: 518 AIALRNSGIPSTVRLMTFEAPMIYDLSTYAANQIEVIIPSSKNAASINMIAKWLQNKHRV 577 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL-------------GQLSLIISHLA 165 + VDTG R G D + +K L+ Sbjct: 578 LGKLKVHIMVDTGLRRDGGYESNIPDSVMETISKLQLLDPNQVEFAGLSTHLACYRCTDY 637 Query: 166 CADDPSSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLGPNYHFQ---------- 211 D+ + ++Q RF +I I LL + Q Sbjct: 638 NGDEIIN-FRALQFHRFEKVIKFLFSQGVQIPLIHIGGGLALLAEKWPLQFEKFLKEFNV 696 Query: 212 --LTRPGISLYGGTDKINKSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD- 265 TR G LYG + + ++ VV + ++ + GE VSYGG + +D Sbjct: 697 GFYTRVGHGLYGMELEKDLHLDSPRLRQVVKMDLQVRNVFYVEEGEPVSYGGYCRAPKDG 756 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 + IA A G+A+G P T G I + PI+GKI M+ M ++ Sbjct: 757 AWIATLAGGWAEGVPRTAQ-----TLGEWQHGMMVCINNHQYPIVGKINMNAMMVNLGSL 811 Query: 326 LSIEVGDYIQIFGP---DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 ++ GD IFG + KL+D+A SG ++V + T + Sbjct: 812 TKVKPGDRAIIFGWSDHEPKLNDLAQLSGQIAPSIMVNVPTSMPRV 857 >gi|172056530|ref|YP_001812990.1| alanine racemase [Exiguobacterium sibiricum 255-15] gi|171989051|gb|ACB59973.1| alanine racemase [Exiguobacterium sibiricum 255-15] Length = 352 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 90/368 (24%), Positives = 160/368 (43%), Gaps = 30/368 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + ID A+++N S+ A S N + AVVK+NAY LG ++ L AGV+ F V V E Sbjct: 7 VTIDREAVRHNVASVFARS-NKQIFAVVKNNAYNLGMIEMVATLMEAGVRHFAVAEVYEA 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++++ P + + ++P + + + + +P L + ++ + L++ Sbjct: 66 IEIKTNFPDSYVLA---MNPASDFKEVRLHGVALG--IPSLDWLTRHQADLSGIELHLKI 120 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL--- 185 + G NR G+S E + ++ L+ + +H AD+P + Q+ERF + Sbjct: 121 NVGMNRFGVSSLEEALAVLETVREQELTLTGLYTHFPLADEPGADH-DGQVERFLEIGNP 179 Query: 186 -ISHYKGIEASLASSSGILLGPN--YHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + +S+ I+ RPGI L+G + I K + + + Sbjct: 180 LQAKHSFTYIHAENSATIVKHDPRLACCNYVRPGIFLFGYSP-IEKMDWLVPSLRMTTEV 238 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + IR+ AGE V YG +AV +GY DG S L I Sbjct: 239 VEIRQVEAGEHVGYGTSYTAPTAIRVAVLPVGYGDGVVRGRSSL------------PVII 286 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY-DLLVRI 361 G PI+ K+ M T + ++E+GD + ++G I++DD+ +GT N + + Sbjct: 287 NGKRYPIISKLFMSHTFIAV--DSTVEIGDKVVLYGDGIEIDDI-TRTGTANNSEQMCAR 343 Query: 362 GTRYAKFY 369 R Y Sbjct: 344 SWRLTHRY 351 >gi|186895776|ref|YP_001872888.1| alanine racemase [Yersinia pseudotuberculosis PB1/+] gi|186698802|gb|ACC89431.1| alanine racemase [Yersinia pseudotuberculosis PB1/+] Length = 409 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 141/359 (39%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I AL N M L N + A++K +AYG + P + VQ V S Sbjct: 45 AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R ++ + + + ++ +I + + G Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRI 164 Query: 125 ALQVDT-GFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +++ G +R GL + +A K + I+SH D + + ++ Sbjct: 165 HLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVEDASEIKADLARFQQ 224 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + G++ +A++ L P+ + R G YG S + V+ Sbjct: 225 QAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYG---DTIASTEYKRVM 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDSL+A +GYADGY S Sbjct: 282 TFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G +P+LGK +M+ M D+TD + +GD + +FG +I+ +++ SG Sbjct: 331 AGHVIIQGQRLPVLGKTSMNTVMVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLSG 389 >gi|170024003|ref|YP_001720508.1| alanine racemase [Yersinia pseudotuberculosis YPIII] gi|169750537|gb|ACA68055.1| alanine racemase [Yersinia pseudotuberculosis YPIII] Length = 409 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 137/359 (38%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I AL N M L N + A++K +AYG + P + VQ V S Sbjct: 45 AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R ++ + + + ++ +I + + G Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRI 164 Query: 125 ALQVDT-GFNRLGLSL------QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 L +++ G +R GL + +A +G +S A Sbjct: 165 HLALNSAGMSRNGLEVSKARGLNDAKTIVGLKNLTIVGIMSHYPVEDASEIKADLARFQQ 224 Query: 178 QLERFRTLIS-HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 Q + + + I+ +A++ L P+ + R G YG S + V+ Sbjct: 225 QAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYG---DTIASTEYKRVM 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDSL+A +GYADGY S Sbjct: 282 TFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G +P+LGK +M+ M D+TD + +GD + +FG +I+ +++ SG Sbjct: 331 AGHVIIQGQRLPVLGKTSMNTVMVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLSG 389 >gi|289828987|ref|ZP_06546687.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 279 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 18/286 (6%) Query: 85 GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALD 144 G Q+ +DT + + ++V++G NRLG + A Sbjct: 4 GFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLDIYVKVNSGMNRLGFQPERAQT 63 Query: 145 FTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILL 204 + ++SH A AD P +++ T SL++S+ L Sbjct: 64 VWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALATEGLQCA---YSLSNSAATLW 120 Query: 205 GPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQK 260 P H+ RPGI LYG + ++ V+T + II ++ AGE V YGG Sbjct: 121 HPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLSSEIIGVQTLSAGERVGYGGGY 180 Query: 261 KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMF 320 +T++ I + A GYADGYP G + G +G ++MDM Sbjct: 181 SVTQEQRIGIVAAGYADGYPRHA-----------PTGTPVLVDGIRTRTVGTVSMDMLAV 229 Query: 321 DITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 D+T +G ++++G +IK+DDVA A+GT Y LL + R Sbjct: 230 DLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 275 >gi|239943637|ref|ZP_04695574.1| putative alanine racemase [Streptomyces roseosporus NRRL 15998] Length = 284 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 109/258 (42%), Gaps = 30/258 (11%) Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLERFRTL 185 DTG R G + + + + + I SH ACAD+P + QL +R L Sbjct: 26 DTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAVYRDL 85 Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236 ++ LA+S L P HF L R GI++YG + ++ V+ Sbjct: 86 VAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGLRPVM 145 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A + L++ A AG VSYG ++ + + +GYADG P SG Sbjct: 146 TLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASGS---------- 195 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + G + + G++ MD + D+ D G +FGP + D A A+ Sbjct: 196 -GPVLVGGKVRTVAGRVAMDQFVVDLEGDRPEA--GAEAVLFGPGDRGEPTAQDWAEAAD 252 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ RIG R + Y Sbjct: 253 TIAYEIVTRIGARVPRVY 270 >gi|291447101|ref|ZP_06586491.1| alanine racemase [Streptomyces roseosporus NRRL 15998] gi|291350048|gb|EFE76952.1| alanine racemase [Streptomyces roseosporus NRRL 15998] Length = 283 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 109/258 (42%), Gaps = 30/258 (11%) Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSVQLERFRTL 185 DTG R G + + + + + I SH ACAD+P + QL +R L Sbjct: 25 DTGLGRGGCQPADWPELVGAARDAERAGHLRITGLWSHFACADEPGHPSIAAQLAVYRDL 84 Query: 186 IS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVV 236 ++ LA+S L P HF L R GI++YG + ++ V+ Sbjct: 85 VAYAEKEGVDPEVRHLANSPATLTIPEAHFDLVRTGIAMYGISPAPELGTSAELGLRPVM 144 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A + L++ A AG VSYG ++ + + +GYADG P SG Sbjct: 145 TLAAAVALVKDAPAGHGVSYGHHYTTPAETTLGLIPVGYADGVPRHASGS---------- 194 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G + G + + G++ MD + D+ D G +FGP + D A A+ Sbjct: 195 -GPVLVGGKVRTVAGRVAMDQFVVDLEGDRPEA--GAEAVLFGPGDRGEPTAQDWAEAAD 251 Query: 352 TTNYDLLVRIGTRYAKFY 369 T Y+++ RIG R + Y Sbjct: 252 TIAYEIVTRIGARVPRVY 269 >gi|20137378|sp|Q8ZFL4|ALR2_YERPE RecName: Full=Alanine racemase 2 Length = 394 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I AL N M L N + A++K +AYG + P + VQ V S Sbjct: 30 AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 89 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R ++ + + + ++ +I + + G Sbjct: 90 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRI 149 Query: 125 ALQVDT-GFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +++ G +R GL + +A K + I+SH D + + ++ Sbjct: 150 HLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVEDASEIKADLARFQQ 209 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + G++ +A++ L P+ + R G YG S + V+ Sbjct: 210 QAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYG---DTIASTEYKRVM 266 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDSL+A +GYADGY S Sbjct: 267 TFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN----------- 315 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G +P+LGK +M+ + D+TD + +GD + +FG +I+ +++ SG Sbjct: 316 AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLSG 374 >gi|22125742|ref|NP_669165.1| alanine racemase [Yersinia pestis KIM 10] gi|108812106|ref|YP_647873.1| alanine racemase [Yersinia pestis Nepal516] gi|145599043|ref|YP_001163119.1| alanine racemase [Yersinia pestis Pestoides F] gi|149366357|ref|ZP_01888391.1| putative alanine racemase [Yersinia pestis CA88-4125] gi|153950742|ref|YP_001400629.1| alanine racemase [Yersinia pseudotuberculosis IP 31758] gi|165925439|ref|ZP_02221271.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016] gi|165938444|ref|ZP_02227001.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275] gi|166008560|ref|ZP_02229458.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001] gi|166210808|ref|ZP_02236843.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004] gi|167422631|ref|ZP_02314384.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426368|ref|ZP_02318121.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468736|ref|ZP_02333440.1| alanine racemase [Yersinia pestis FV-1] gi|218928815|ref|YP_002346690.1| alanine racemase [Yersinia pestis CO92] gi|229841680|ref|ZP_04461838.1| putative alanine racemase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843797|ref|ZP_04463940.1| putative alanine racemase [Yersinia pestis biovar Orientalis str. India 195] gi|229894540|ref|ZP_04509722.1| putative alanine racemase [Yersinia pestis Pestoides A] gi|229902427|ref|ZP_04517546.1| putative alanine racemase [Yersinia pestis Nepal516] gi|270490394|ref|ZP_06207468.1| alanine racemase [Yersinia pestis KIM D27] gi|294504124|ref|YP_003568186.1| alanine racemase [Yersinia pestis Z176003] gi|21958663|gb|AAM85416.1|AE013788_2 putative alanine racemase [Yersinia pestis KIM 10] gi|108775754|gb|ABG18273.1| alanine racemase [Yersinia pestis Nepal516] gi|115347426|emb|CAL20330.1| putative alanine racemase [Yersinia pestis CO92] gi|145210739|gb|ABP40146.1| alanine racemase [Yersinia pestis Pestoides F] gi|149290731|gb|EDM40806.1| putative alanine racemase [Yersinia pestis CA88-4125] gi|152962237|gb|ABS49698.1| alanine racemase [Yersinia pseudotuberculosis IP 31758] gi|165913559|gb|EDR32179.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275] gi|165922548|gb|EDR39699.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992942|gb|EDR45243.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001] gi|166207988|gb|EDR52468.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004] gi|166958478|gb|EDR55499.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054723|gb|EDR64527.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680473|gb|EEO76570.1| putative alanine racemase [Yersinia pestis Nepal516] gi|229689405|gb|EEO81468.1| putative alanine racemase [Yersinia pestis biovar Orientalis str. India 195] gi|229694143|gb|EEO84191.1| putative alanine racemase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703559|gb|EEO90576.1| putative alanine racemase [Yersinia pestis Pestoides A] gi|262362240|gb|ACY58961.1| alanine racemase [Yersinia pestis D106004] gi|262366174|gb|ACY62731.1| alanine racemase [Yersinia pestis D182038] gi|270338898|gb|EFA49675.1| alanine racemase [Yersinia pestis KIM D27] gi|294354583|gb|ADE64924.1| alanine racemase [Yersinia pestis Z176003] gi|320014832|gb|ADV98403.1| putative alanine racemase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 409 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I AL N M L N + A++K +AYG + P + VQ V S Sbjct: 45 AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R ++ + + + ++ +I + + G Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRI 164 Query: 125 ALQVDT-GFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +++ G +R GL + +A K + I+SH D + + ++ Sbjct: 165 HLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVEDASEIKADLARFQQ 224 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + G++ +A++ L P+ + R G YG S + V+ Sbjct: 225 QAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYG---DTIASTEYKRVM 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDSL+A +GYADGY S Sbjct: 282 TFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G +P+LGK +M+ + D+TD + +GD + +FG +I+ +++ SG Sbjct: 331 AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLSG 389 >gi|51596715|ref|YP_070906.1| alanine racemase [Yersinia pseudotuberculosis IP 32953] gi|51589997|emb|CAH21630.1| putative alanine racemase [Yersinia pseudotuberculosis IP 32953] Length = 409 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I AL N M L N + A++K +AYG + P + VQ V S Sbjct: 45 AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R ++ + + + ++ +I + + G Sbjct: 105 QELKMVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRI 164 Query: 125 ALQVDT-GFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +++ G +R GL + +A K + I+SH D + + ++ Sbjct: 165 HLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVEDASEIKADLARFQQ 224 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + G++ +A++ L P+ + R G YG S + V+ Sbjct: 225 QAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYG---DTIASTEYKRVM 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDSL+A +GYADGY S Sbjct: 282 TFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G +P+LGK +M+ + D+TD + +GD + +FG +I+ +++ SG Sbjct: 331 AGHVIIQGQRLPVLGKTSMNTVIVDVTDLKKVSLGDEVVLFGKQGNAEIQAEEIEDLSG 389 >gi|213423375|ref|ZP_03356363.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 299 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 134/275 (48%), Gaps = 3/275 (1%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + P+++SV Q +T+ + + P +Q+ Sbjct: 76 LRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG++ ++ + IISHLA AD P +N Q + Sbjct: 136 DSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANADRPDHALNVYQHTLLQQAKKA 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + SLA+S G+ L P + L RPG++L+G + S P++ T I+ ++ Sbjct: 196 FPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFSTPLKPAFTLTLTILRVQDV 254 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 G + YG TR IA + GYADG P L Sbjct: 255 PVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL 289 >gi|108807830|ref|YP_651746.1| alanine racemase [Yersinia pestis Antiqua] gi|167401740|ref|ZP_02307231.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108779743|gb|ABG13801.1| putative alanine racemase [Yersinia pestis Antiqua] gi|167048845|gb|EDR60253.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 409 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 28/359 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+I AL N M L N + A++K +AYG + P + VQ V S Sbjct: 45 AWLEISQGALDFNTKKMLTLLDNKSTLCAILKGDAYGHDLTLVTPVMLKNNVQCIGVASN 104 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHPY 124 +E +R ++ + + + ++ +I + + G Sbjct: 105 QELKTVRDLGFTGQLIRVRSATLKEMQQAMAYDVEELIGDKTVAEQLNNIAKLNGKVLRI 164 Query: 125 ALQVDT-GFNRLGLSLQEALDF--THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +++ G +R GL + +A K + I+SH D + + ++ Sbjct: 165 HLALNSAGMSRNGLEVSKARGLNDAKTIAGLKNLTIVGIMSHYPVEDASEIKADLARFQQ 224 Query: 182 FRTLISHYKGIEA-----SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + G++ +A++ L P+ + R G YG S + V+ Sbjct: 225 QAKDVIAVTGLKREKIKLHVANTFATLAVPDSWLDMVRVGGVFYG---DTIASTEYKRVM 281 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T ++ I + G V Y L RDSL+A +GYADGY S Sbjct: 282 TFKSNIASLNNYPKGGTVGYDRTYTLKRDSLLANIPVGYADGYRRVFSN----------- 330 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 G I+G +P+LGK +M+ + D+TD + +GD + +FG +I+ +++ SG Sbjct: 331 AGHVIIQGQRLPVLGKTSMNTVIVDVTDMKKVSLGDEVVLFGKQGNAEIQAEEIEDLSG 389 >gi|223999109|ref|XP_002289227.1| alanine racemase [Thalassiosira pseudonana CCMP1335] gi|220974435|gb|EED92764.1| alanine racemase [Thalassiosira pseudonana CCMP1335] Length = 388 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 146/400 (36%), Gaps = 54/400 (13%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67 I L+++++N++ + + + + +V K + YG G A L G + F V ++EE Sbjct: 1 IHLSSIRHNYNVVQSSAAQQQCQVIVVVKADGYGHGAVMTACHLVERCGAEAFAVATLEE 60 Query: 68 GVKLRLYTPQ--ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY----SKLMSCGVS 121 GV LR + + + + + + ++ ++ Sbjct: 61 GVALRRALEERFPPSSLAPRRKRAEVERVAERRKEELMGDQRKIHILLRSYHHSAESTWK 120 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK---LGQLSLIISHLACADDPSSHVNSVQ 178 + VD+G RLG + + + L + + +S Q Sbjct: 121 CWWHSLVDSGMGRLGFKTDQISADGNTPLSSPTPSLEMPFYGMCTHMADANSTSTYTHSQ 180 Query: 179 LERFRTLISHYKGI-----------EASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 ++RFR+L+ + A+L ++S PN R G ++YG Sbjct: 181 MDRFRSLLHRVRSAGVAVPTISTDNSAALLTTSLTHFDPNAILGFVRCGGAIYGQRPAFK 240 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + ++ V T A + + GE V Y D IA +G+ADGYP L Sbjct: 241 E---LRAVSTLTATVKHVAVISEGESVGYDRAYVAPMDVRIATLTVGFADGYPRELGNGV 297 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS------IEVGDYIQIFGPD- 340 G+ I+G P+ G + MDM M ++ + + VGD ++GP+ Sbjct: 298 ----------GRVSIRGSTFPVAGNVCMDMLMVELGPAEDEGAGAHVTVGDIAVLWGPEG 347 Query: 341 ----------IKLDDVALASGTTNYDLLVRIGT-RYAKFY 369 + L D+A TT L + R + + Sbjct: 348 MDVENCGNGLVTLADLAATLKTTQSALTCGLDKLRVQRQF 387 >gi|293395857|ref|ZP_06640139.1| alanine racemase [Serratia odorifera DSM 4582] gi|291421794|gb|EFE95041.1| alanine racemase [Serratia odorifera DSM 4582] Length = 257 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 19/268 (7%) Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162 + S QL ++ L++++G NRLG + + + ++S Sbjct: 1 MHSDWQLAAIAE-AQLSAPLAVYLKINSGMNRLGFAPARLPQVWQQAQQIRNIAAITLMS 59 Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222 H A AD P Q + + LA+S+ L P H RPGI LYG Sbjct: 60 HFATADGPQGVT---QQMATIDAAAAALPLPRCLANSAATLWHPATHGSWVRPGIVLYGA 116 Query: 223 TDKINK----SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 + +Q ++ + II ++ G+ V YG + + I + A GYADG Sbjct: 117 SPSGQWRDIAETGLQPTMSLRSEIIALQTLQPGDRVGYGWRYAASAVQRIGIVACGYADG 176 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG 338 YP G ++ G + +G ++MDM D+T +G ++++G Sbjct: 177 YPRHA-----------PSGTPVWVDGVLTRTVGTVSMDMLAVDLTSCPQASIGTPVELWG 225 Query: 339 PDIKLDDVALASGTTNYDLLVRIGTRYA 366 + +D+VA A+GT Y+LL + R Sbjct: 226 RHLPVDEVAAAAGTLGYELLTALAQRVP 253 >gi|160894017|ref|ZP_02074796.1| hypothetical protein CLOL250_01572 [Clostridium sp. L2-50] gi|156864395|gb|EDO57826.1| hypothetical protein CLOL250_01572 [Clostridium sp. L2-50] Length = 381 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 22/352 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + L I AL NN + L+ A+ AV+K NAYGLG K A L + G+ ++ VT Sbjct: 16 DMTTLTIKTNALDNNIRIIKRLANGAKVIAVLKGNAYGLGLTKFASFLQSKGIDNYGVTE 75 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + V LR I ++ ++ ++ + I + + + ++HP Sbjct: 76 LSDAVTLRRNGITGNILLMTPLYNSEDITTAIDHDITLSITSTDCAHVIDETAAYMNHPT 135 Query: 125 ---ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L +DTGF R G + + + + +++ I SH A + + Q + Sbjct: 136 VHAHLCIDTGFGRYGFLCSDEKQIANTIQSLRHIKITGIFSHFHAAACRNEYYVKKQFQD 195 Query: 182 FRTLIS--HYKGIE---ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 F L G+ ++SS+ ++ P+ + R G + G N + + V Sbjct: 196 FTHLCDALRKDGVPVGIRHISSSTSMIKYPSMNLDAIRIGSAFLGRLAVPN-DYGFREVC 254 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL-----TLSGLDSEHS 291 A + I + AG + YG KL+ ++ AV + GY G + + + S Sbjct: 255 NLSAYVDDIYELPAGHNIGYGHSFKLSHNAKTAVISAGYYHGLGMERHTDSRTNFFSPIR 314 Query: 292 PSVFLGG-------KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 L G K Y +P+LG+I+M+ + D T +I VGD + Sbjct: 315 IYYKLKGTFHKKTPAASFKDYRLPVLGQISMNSVIVDTTGC-NISVGDTVTF 365 >gi|288960918|ref|YP_003451257.1| alanine racemase [Azospirillum sp. B510] gi|288913226|dbj|BAI74713.1| alanine racemase [Azospirillum sp. B510] Length = 389 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 79/360 (21%), Positives = 125/360 (34%), Gaps = 29/360 (8%) Query: 26 LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 L+ R VVK NAYG G ++ AL AG+ F V S +EG LR A I V+ Sbjct: 33 LAPTTRILGVVKANAYGHGAVAVSRALERAGIDGFAVDSPDEGTALRDAGIAAPILVMNP 92 Query: 86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM---------SCGVSHPYALQVDTGFNRLG 136 + PG + L +S V G G Sbjct: 93 LCPGDAPALVAAGLTAAVSDGEAAQALDDAARRAGGVAGLHVRVRADADGMGGDGLGTGG 152 Query: 137 LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASL 196 + L H N ++ L + D + + Sbjct: 153 DGVAPLLRALHRFANLRVEGLFTHMIGPYRDDPVQIGREIAGFRGLLGRLPADVPRPPLI 212 Query: 197 ASSSGILLG--PNYHFQLTRPGISLYG--GTDKINKSHPMQTVVTAEARIILIRKALAGE 252 +++ L P F + R G LYG + P + V+ +RI + + G+ Sbjct: 213 HAATSPGLFNAPGARFDMVRLGAVLYGIRMVEAGGAPFPFRPVMELVSRIAHLGRLEPGD 272 Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 + YG + A+ +GYAD P L+ D I+G P++G+ Sbjct: 273 DIGYGPAARRRTGGRAAMIPMGYAD-LPFLLNFRD----------TAVLIRGRRAPLIGE 321 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKF 368 M + D+TD E+GD + G I ++D+ A+G +L +G R A+ Sbjct: 322 AFMGKVLADVTDIPEAELGDEVVFVGAQGMESITVEDIGKANGIRPSAIL-MLGPRVARR 380 >gi|330813901|ref|YP_004358140.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063] gi|327486996|gb|AEA81401.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063] Length = 198 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 14/210 (6%) Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY 220 +SHLACAD+ +++ N++Q RF + + + SLA+S GI LG YH+ + RPGISLY Sbjct: 1 MSHLACADEKNNNYNNIQKARFEKIKKEFSNCKYSLAASGGIFLGKQYHYDMVRPGISLY 60 Query: 221 GGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP 280 GG +K ++ V+ + + I + GE + Y +++ A IGYADG Sbjct: 61 GGKRTFHK--GIKHAVSLKVPVTQINQIKKGESIGYSRTFYTKKNTTTATIPIGYADGLN 118 Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIFGP 339 + LS G KG +PI+G+++MD+ + D+T + ++VGD I I+ Sbjct: 119 IRLSN-----------KGFFLFKGKKIPIIGRVSMDLIILDVTKFKNKVKVGDMIDIYNS 167 Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D +DD A +GT Y ++ + RY K Y Sbjct: 168 DYTIDDFAKQTGTIPYRIITCMSQRYDKKY 197 >gi|222080194|ref|YP_002540057.1| alanine racemase [Agrobacterium vitis S4] gi|221738839|gb|ACM39618.1| alanine racemase [Agrobacterium vitis S4] Length = 294 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 102/272 (37%), Positives = 142/272 (52%), Gaps = 3/272 (1%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL N+ + ++ TAAVVK +AYGLG E++A LY G + FFV E Sbjct: 24 LTIDLGALSRNYELLAGMAAPGNTAAVVKADAYGLGAERVARTLYAKGCRHFFVAQFIEA 83 Query: 69 VKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 +LR + ARIFVL G+ PG E + N++PVI+S+ Q ++ G P + Sbjct: 84 TRLRPALSYDARIFVLNGLQPGNEDVCAYENIVPVINSMDQWRNRNRTARRLGRRLPIVV 143 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGL +E + ++SHLA ADD S N QLE R + Sbjct: 144 QFDTGMSRLGLPPEERPLLAEAVAQGSDVDILFLMSHLASADDEKSAQNGEQLEELRKIA 203 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + + G + S A+S GI LG +Y L RPGI+LYGG ++ PM+ VV + ++ R Sbjct: 204 AEFPGYDLSFANSGGIFLGDDYRGLLARPGIALYGGAPSAARN-PMEAVVRLDVAVVQTR 262 Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 V YGG TR++ +A A G D Sbjct: 263 TVPGSTKVGYGGAHVTTRETRLATIAAGECDV 294 >gi|255017730|ref|ZP_05289856.1| hypothetical protein LmonF_08290 [Listeria monocytogenes FSL F2-515] Length = 255 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 108/260 (41%), Gaps = 25/260 (9%) Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + L+VD+G RLG+ +EA S N QL I +H A AD + QL Sbjct: 8 TLRIHLKVDSGMGRLGIRTAEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQL 67 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 +F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 68 AKFQTILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELK 127 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 128 PALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------- 180 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALA 349 + G PI+G++ MD T+ + + G + I G D + DD A Sbjct: 181 -----HVLVDGEPAPIIGRVCMDQTIIKLPREF--QTGSKVTIIGKDHGNTVTADDAAQY 233 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 T NY++ + R + Y Sbjct: 234 LDTINYEVTCLLNERIPRKY 253 >gi|218671884|ref|ZP_03521553.1| alanine racemase protein [Rhizobium etli GR56] Length = 160 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275 GI+LYGG ++PM+ V TAEARII +R AGE VSYG +L RDS +A+ + GY Sbjct: 1 GIALYGGEAVCGMANPMRPVATAEARIIQVRTVGAGETVSYGRALQLPRDSRLAIVSAGY 60 Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDY 333 ADGY + S +V GG+GFI G+ VP+ G+ITMD+T+FD+TD + GDY Sbjct: 61 ADGYMRSQSSGGVPLRQAVPQGGQGFIAGHKVPVAGRITMDLTIFDVTDLPENAVRAGDY 120 Query: 334 IQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++FG ++ LDDVA A+GT Y++L +G R+ + Y Sbjct: 121 VELFGKNMPLDDVARAAGTIGYEILTSMGLRHERRY 156 >gi|322819666|gb|EFZ26693.1| alanine racemase 2, putative [Trypanosoma cruzi] Length = 388 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 151/395 (38%), Gaps = 48/395 (12%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67 +++ L + N + ++G A +VK NAYG G K++ L+NA GV F V S+ E Sbjct: 7 VEVCLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGKVSEYLHNACGVHTFGVASLGE 66 Query: 68 GVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++L P +A+ + + P +LT + + Sbjct: 67 ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126 Query: 124 YA---------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + L+++TG NRLGL E + + L L +A + + + Sbjct: 127 ASNAFNNSKLCLKLETGMNRLGLRFDELEEAVPILKQRGGVDLLLQHFGIAGSVERLAE- 185 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGP-----NYHFQLTRPGISLYGGTDKINKS 229 E F+ + ++S G RPGI LYG +K+ Sbjct: 186 TLNHYEAFKNAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRPGIMLYGPRSVTSKN 245 Query: 230 HPMQTVVTAE-ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +++ GE V Y + DS+I + IGYADG+ T G+ Sbjct: 246 LWNGKFASCFYTKVLHHFPLRKGEGVGYDLT-PVKADSVIVMLPIGYADGFLCTYKGMPI 304 Query: 289 EHSPSVFLGGKGFIKGYMVPIL----GKITMDMTMF---------DITDSL-SIEVGDYI 334 + +P PI+ G+I MDM +I + + +++ I Sbjct: 305 KVTPEDAAE----------PIIGTVHGRINMDMAAVVVYPEEVGKNIGNIMTAVKKESRI 354 Query: 335 QIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++G DI ++ A++ GT + L + R + Y Sbjct: 355 RVWGDDI--EEKAVSVGTIPHQLTCGLSIRVPRIY 387 >gi|229917987|ref|YP_002886633.1| alanine racemase [Exiguobacterium sp. AT1b] gi|229469416|gb|ACQ71188.1| alanine racemase [Exiguobacterium sp. AT1b] Length = 362 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 142/369 (38%), Gaps = 37/369 (10%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + IDL A++ N + AL AVVK+NAY LG E + LY+ GV+ F VT++EE Sbjct: 3 VTIDLNAIRENKRRIEAL--GRPVFAVVKNNAYNLGMEPVVTTLYDEGVRHFMVTTLEEA 60 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +++R + AR+ ++ ++ + + ++ + L++ Sbjct: 61 LEVRTHAESARVLIMNPVYTWE-----HVHAHDFDVAIGSYEWLVSQREHLDGVRLHLKL 115 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRTL-- 185 D G NR G E + L + +H AD D + +SVQ+ERF Sbjct: 116 DVGMNRFGAKTFEEALRIVAFCQNEGLNLVGLCTHFPLADADNAEVEHSVQVERFADWST 175 Query: 186 -ISHYKGIEASLASSSGILLGPNY---HFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + E A++S L + H R GI LYG + + + E Sbjct: 176 RLMERHTFELIHAANSAATLQDDSRLHHCTHVRVGIFLYGYS-SVEPVEWLVPAFYWETE 234 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 ++ + AG V YG IAV +GY DG Sbjct: 235 VVAVHDIEAGAHVGYGTGYTAESKERIAVLPVGYGDGLMRA------------RRHLPVH 282 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY----DL 357 I+G P + I M + + +++GD + ++G + K+DDV Y + Sbjct: 283 IEGRAYPFVSNIFMSHSFIKV--DEDVQIGDRVALYGIETKIDDVTR----VGYANNSEQ 336 Query: 358 LVRIGTRYA 366 L R Sbjct: 337 LCARSWRVP 345 >gi|58039646|ref|YP_191610.1| alanine racemase [Gluconobacter oxydans 621H] gi|58002060|gb|AAW60954.1| Alanine racemase [Gluconobacter oxydans 621H] Length = 257 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 126/227 (55%), Gaps = 2/227 (0%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL +DL A+ +N+ + L+ A AAVVK +AYGLG E++AP L NAG DFFV V+ Sbjct: 17 ARLTVDLDAIASNYRYLQTLASGASCAAVVKADAYGLGIERVAPVLENAGATDFFVAHVD 76 Query: 67 EGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY- 124 EG++LR + +ARI VL+G PG L PV++S+ Q+ + S + P Sbjct: 77 EGIRLRSVVSEKARITVLHGPRPGASADCVRYGLRPVLNSLEQIALWRDEGSRTDALPEA 136 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ALQVD+G +R GLS + + ++ L++SHLACAD P N Q +R Sbjct: 137 ALQVDSGMSRFGLSDADLETLQADKGLVDGLKVGLVMSHLACADTPDHPANQAQKDRLLQ 196 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 + + SL++SSGI LG +YH + RPG +LYG +P Sbjct: 197 MSARLPPAPLSLSASSGIFLGTDYHLDVVRPGAALYGIAPNRTGPNP 243 >gi|302558949|ref|ZP_07311291.1| alanine racemase [Streptomyces griseoflavus Tu4000] gi|302476567|gb|EFL39660.1| alanine racemase [Streptomyces griseoflavus Tu4000] Length = 193 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 20/183 (10%) Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKAL 249 +A+S L P HF L RPGI++YG + ++ +T A + L++ Sbjct: 15 RHIANSPATLTLPESHFDLVRPGIAMYGISPSPEIGTSADFGLRPAMTLSASLALVKHVP 74 Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309 G VSYG + + + +GYADG P S G ++G + Sbjct: 75 GGHGVSYGHHYVTPGATTLGLVPLGYADGIPRHAS-----------SAGPVLVEGKWRTV 123 Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRY 365 G++ MD + D+ E G +FGP + +D A A+GT Y+++ RIG R Sbjct: 124 AGRVAMDQFVVDLGGDEP-EPGAEAVLFGPGDRGEPTAEDWAQAAGTIAYEIVTRIGARV 182 Query: 366 AKF 368 + Sbjct: 183 PRV 185 >gi|308454191|ref|XP_003089746.1| hypothetical protein CRE_10733 [Caenorhabditis remanei] gi|308269018|gb|EFP12971.1| hypothetical protein CRE_10733 [Caenorhabditis remanei] Length = 769 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%) Query: 7 LRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R++ID +AL++N + A G+A AV+K +AYG G E + P + AGV + S Sbjct: 402 ARVEIDRSALESNLRYLLAEMGSASPEVCAVLKSDAYGHGIEHVLPVVLAAGVTAVGIVS 461 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 E +R RI + + + + + + + + VS P Sbjct: 462 NPEARLVRELGFGGRILRVRAATSAEARGALPMAVEEWLGGLAHARALAAIAEAVDVSIP 521 Query: 124 YALQVDT---GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L +++ L L A + + I +H D L Sbjct: 522 VHLALNSTGLSKESLDLGASGADAELAGIVASRRLDVRGIAAHFPREDAHD---VREGLS 578 Query: 181 RFRTLISHY---------KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 FR G++ A+S L P L R G +LYG D + Sbjct: 579 AFRADADRVLEALGPDRAAGVQRHCATSFAALEVPESRLDLVRIGAALYG--DSSAAAPW 636 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + + + + + + AG V Y +L ++ IA +GY DG P +L G Sbjct: 637 QRRAMRIVSEVSTVCRYPAGRTVGYERHHRLDAETRIATVPLGYGDGVPRSLGGR----- 691 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLD------D 345 G + G VPI+ + M+ D+T+ + GD + ++G + + + Sbjct: 692 ------GWALVGGRSVPIVDHLAMNTLAIDVTEIPEVGPGDEVVLYGRQGEAELDGGALE 745 Query: 346 VALASGTTNYDLLVRIGTRYAK 367 +A SG +G + Sbjct: 746 LA--SGQIAAAAYTGMGRILPR 765 >gi|213617521|ref|ZP_03372347.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 186 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 16/192 (8%) Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVT 237 F G + S+A+S GILL P HF RPGI LYG + Q V++ Sbjct: 5 FNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGIILYGVSPLEHKPWGPDFGFQPVMS 63 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I +R AGE V YGG RD+ + V A+GY DGYP G Sbjct: 64 LTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSG 112 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L Sbjct: 113 TPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYEL 172 Query: 358 LVRIGTRYAKFY 369 + R+ +R A Y Sbjct: 173 ITRLTSRVAMKY 184 >gi|289805711|ref|ZP_06536340.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 245 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 114/258 (44%), Gaps = 18/258 (6%) Query: 91 EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN-S 149 I L + + QL + +++DTG +RLG+ +EA F + Sbjct: 1 MPTISAQCLHTAVHNQEQLAALEAVELAE-PVTVWMKLDTGMHRLGVRPEEAEAFYQRLT 59 Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYH 209 K + Q I+SH A AD+P QL+ F G + S+A+S GILL P H Sbjct: 60 HCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSH 118 Query: 210 FQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRD 265 F RPGI LYG + Q V++ + +I +R AGE V YGG RD Sbjct: 119 FDWARPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERD 178 Query: 266 SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS 325 + + V A+GY DGYP G + G VPI+G++ MDM D+ + Sbjct: 179 TRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGPN 227 Query: 326 LSIEVGDYIQIFGPDIKL 343 GD + ++G + + Sbjct: 228 AQDNAGDPVVLWGEGLPV 245 >gi|257464238|ref|ZP_05628617.1| alanine racemase [Fusobacterium sp. D12] gi|317061757|ref|ZP_07926242.1| alanine racemase [Fusobacterium sp. D12] gi|313687433|gb|EFS24268.1| alanine racemase [Fusobacterium sp. D12] Length = 360 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 126/375 (33%), Gaps = 30/375 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N F L+++ A+ +N + V+K NAYG G ++A AG+ Sbjct: 1 MIKNSFY-LEVNRDAILHNIEVLRKW-KKKDIIPVIKANAYGHGAVEMAKTCLQAGITQV 58 Query: 61 FVTSVEEGVKL------RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114 V EE + + + +L G + +I I + + + Sbjct: 59 AVARYEEARHILEDSYFQRLSETVPFQILVFETMGDDSVIKAFPRIDMAINSLEDLK-EA 117 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L +++D F R G+ ++ K + + A + + Sbjct: 118 LEHGISPKRMHVKIDLSFGRNGIEEKDFKYLIREIQEKNIFLKGIFSHLFASSYEDGLLC 177 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + I L +S+ R G+ YG + +Q Sbjct: 178 IEL-FSTLLSQIGREHFERIHLQNSASAYNYDCDIVTDIRVGMLNYGLQEPGYFHEDLQQ 236 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKL--TRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + R+ IR + ++Y +++L IA IGYADG+ + Sbjct: 237 AFSLKGRVDSIRAGKDMKYLAYERKEELGVEEAKWIAKIKIGYADGFGKQNENTN----- 291 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 I I+ +ITMD + ++ ++VGD + +F V +G Sbjct: 292 -------CLIHRKEYRIV-EITMDNSFLEV--DERVKVGDEVILF---YNAAKVKQETGK 338 Query: 353 TNYDLLVRIGTRYAK 367 Y+ L + R + Sbjct: 339 QVYEHLTGLTERLPR 353 >gi|297521078|ref|ZP_06939464.1| alanine racemase [Escherichia coli OP50] Length = 163 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 15/172 (8%) Query: 202 ILLGPNYHFQLTRPGISLYGGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYG 257 +LL P HF RPGI LYG + Q V++ + +I +R+ AGE V YG Sbjct: 1 MLLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYG 60 Query: 258 GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM 317 G RD+ + V A+GY DGYP G + G VPI+G++ MDM Sbjct: 61 GTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRVAMDM 109 Query: 318 TMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D+ + GD + ++G + ++ +A + + Y+L+ R+ +R A Y Sbjct: 110 ICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKY 161 >gi|297519923|ref|ZP_06938309.1| alanine racemase [Escherichia coli OP50] Length = 202 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 4/202 (1%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + +L G ++ + + S + Sbjct: 62 EALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 122 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 181 Query: 186 ISHYKGIEASLASSSGILLGPN 207 G + S+A+S GILL P Sbjct: 182 CEGKPG-QRSIAASGGILLWPQ 202 >gi|88800370|ref|ZP_01115936.1| alanine racemase [Reinekea sp. MED297] gi|88776947|gb|EAR08156.1| alanine racemase [Reinekea sp. MED297] Length = 369 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 128/352 (36%), Gaps = 26/352 (7%) Query: 29 NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88 +A AV+K +AYG G ++A + ++ +TS E +R + I L P Sbjct: 32 HAEFCAVLKADAYGHGIAEVAAIVCEHRIKTVGITSNAEARLVREAGFEGTILRLRTATP 91 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148 + + +SS+ L G +R GL L E Sbjct: 92 SEIAGAVADRVQEQVSSLYTAEVIDSLTEHSEGVHL-AINAGGMSRDGLELNERDGHDTC 150 Query: 149 SF--NKKLGQLSLIISHLACADDPSSHVNSVQL-----ERFRTLISHYKGIEASLASSSG 201 + ++ I +H + ++ F + + SS Sbjct: 151 QRIVDLLGDRIVGICTHHPSGSEQDLQLSDQHFRSDLNWIFSNTALKREQVNVHAGSSLS 210 Query: 202 ILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261 ++ R G LYG + + + +A+I I G + Y Sbjct: 211 LISSTPIETDFYRCGAILYGI---LKPELGFEHTMQLKAQITNITTYPQGSTIGYDRTTT 267 Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 LTRDS +A A+GYA+G+ G I+G +VP+LGK++M+ + D Sbjct: 268 LTRDSRVANIALGYANGFRRNYFGRS-----------HVLIRGQLVPVLGKVSMNTIVAD 316 Query: 322 ITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +TD +EV D + IFG I + + + + T D+ G R + Y Sbjct: 317 VTDIPVVEVEDEVVIFGHQGTGKIDIKRIEMQADTIMADIYAEWGQRNPRVY 368 >gi|213621090|ref|ZP_03373873.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 200 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 162 SHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221 SHLA AD P +N Q + + SLA+S G+ L P + L RPG++L+G Sbjct: 1 SHLANADRPDHALNVYQHTLLQQAKKAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFG 60 Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 + S P++ T I+ ++ G + YG TR IA + GYADG P Sbjct: 61 VA-QPWFSTPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPR 119 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341 L +G +P+LG++ MD M D + + GD ++ G Sbjct: 120 NL-----------RPPAGVCWRGVRLPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQ 167 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKF 368 L++VA A T Y+++ R+G R+ + Sbjct: 168 TLEEVAAACDTIPYEIMARLGARFRRI 194 >gi|154174920|ref|YP_001408670.1| alanine racemase [Campylobacter curvus 525.92] gi|226711031|sp|A7GZM8|ALR_CAMC5 RecName: Full=Alanine racemase gi|112802113|gb|EAT99457.1| alanine racemase [Campylobacter curvus 525.92] Length = 337 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 74/374 (19%), Positives = 139/374 (37%), Gaps = 48/374 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++++ A +N ++ +G R V+KDNAYG G + IA A G++ V S Sbjct: 1 MSEIRLNKKAYIHNLMQISNKAGGKERVMLVLKDNAYGHGAKLIAAAASEFGIKFCAVKS 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E ++++ + +L I G E F + + L Sbjct: 61 QSEALEIQRNFEKI--LILSHIANGDEDQNF----------IYAINDMKGLNRIKRGTRI 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +DT +R GL E ++ L +H +D+ ++ VQ + F+ Sbjct: 109 HLVIDTNMHRNGLKFSELE-AAFGPIKERGLALEGAYTHFRASDEMNADYF-VQRQNFKE 166 Query: 185 LISH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + +S+ + + + R GI+ +G + + S ++ V Sbjct: 167 AKAEILRLCEKFAMPHPIFHSHNSAALERFGEFDDDMVRVGIAQHG-YAQFDDSLNLKPV 225 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ A+ + R AG+ V YG + +D IA +GY DG + Sbjct: 226 LSLWAQKVSERVLKAGQCVGYGAKFCADKDINIATYDLGYGDGLLRYAGDGELP------ 279 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G +LGK++MD G+++ +F + A T NY Sbjct: 280 -----LANGKA--MLGKMSMDSF-----SCEDA--GEWVCVFDD---ANVWARYFDTINY 322 Query: 356 DLLVRIGTRYAKFY 369 D+LV++ + + Sbjct: 323 DILVKLSPNIKRKF 336 >gi|289811326|ref|ZP_06541955.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 174 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 15/177 (8%) Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAEARIILIRKAL 249 SL++S+ L P H+ RPGI LYG + ++ V+T + II ++ Sbjct: 5 YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLSSEIIGVQTLS 64 Query: 250 AGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPI 309 AGE V YGG +T++ I + A GYADGYP G + G Sbjct: 65 AGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTPVLVDGIRTRT 113 Query: 310 LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y LL + R Sbjct: 114 VGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 170 >gi|71425229|ref|XP_813053.1| alanine racemase [Trypanosoma cruzi strain CL Brener] gi|70877902|gb|EAN91202.1| alanine racemase, putative [Trypanosoma cruzi] Length = 388 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 149/395 (37%), Gaps = 48/395 (12%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEE 67 +++ L + N + ++G A +VK NAYG G +++ L+NA GV F V S+ E Sbjct: 7 VEVFLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGRVSEYLHNACGVHKFGVASLGE 66 Query: 68 GVKLRLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++L P +A+ + + P +LT + + Sbjct: 67 ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126 Query: 124 YA---------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + L+++TG NRLGL E + + L L +A + + + Sbjct: 127 ASNAFNNSKLCLKLETGMNRLGLRFDELEEAVPILKQRGGVDLLLQHFGIAGSVERLAE- 185 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGP-----NYHFQLTRPGISLYGGTDKINKS 229 E F+ + ++S G RPGI LYG +K+ Sbjct: 186 TLNHYEAFKKAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRPGIMLYGPRSVTSKN 245 Query: 230 HPMQTVVTAE-ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +++ GE V Y + DS+I + IGYADG+ T G+ Sbjct: 246 LWNGKFASCFYTKVLHHFPLRKGEGVGYDLT-PVKADSVIVMLPIGYADGFLCTYKGMPI 304 Query: 289 EHSPSVFLGGKGFIKGYMVPIL----GKITMDMTMF---------DITDSL-SIEVGDYI 334 +P PI+ G+I MDM +I + + +++ I Sbjct: 305 NVTPEDAAE----------PIIGTVHGRINMDMAAVVVYPEEVGKNIGNIMAAVKKESRI 354 Query: 335 QIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +++G DI ++ A++ G + L + R + Y Sbjct: 355 RVWGDDI--EEKAVSVGAIPHQLTCGLSIRVPRIY 387 >gi|309789197|ref|ZP_07683790.1| alanine racemase [Shigella dysenteriae 1617] gi|308922951|gb|EFP68465.1| alanine racemase [Shigella dysenteriae 1617] Length = 200 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 15/187 (8%) Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF R GI LYG + + ++ V+T Sbjct: 21 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRLGIILYGASPSGQWRDIANTGLRPVMTLS 80 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + II ++ AGE V YGG+ + I + A GYADGY G Sbjct: 81 SEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYSRHA-----------PTGTP 129 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 130 VLVDGVRTMTVGTVSMDMMAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMC 189 Query: 360 RIGTRYA 366 + R Sbjct: 190 ALALRVP 196 >gi|255024672|ref|ZP_05296658.1| alanine racemase [Listeria monocytogenes FSL J1-208] Length = 204 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 164 LACADDPSSHVNSVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYG 221 A AD + QL +F+T+++ K + +S+ LL P F R GIS+YG Sbjct: 1 FATADQLETSYFEQQLAKFQTILTSLKNRPTYVHVANSAASLLQPQIGFDAIRFGISMYG 60 Query: 222 GTDKIN----KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD 277 T ++ + ++ +++ G+ VSYG T +A IGYAD Sbjct: 61 LTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYAD 120 Query: 278 GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 G SG + G PI+G++ MD T+ + + G + I Sbjct: 121 GLIRHYSGF------------HVLVDGEFAPIIGRVCMDQTIIKLPREF--QTGSKVTII 166 Query: 338 GPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G D I DD A T NY++ + R + Y Sbjct: 167 GEDHGNVITADDAAHYLDTINYEVTCLLNERIPRKY 202 >gi|297517360|ref|ZP_06935746.1| alanine racemase [Escherichia coli OP50] Length = 255 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 11/258 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+V++G NRLG L ++SH A A+ P ++ Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARI--- 176 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 + SL++S+ L P HF RPGI LYG + + ++ V+T Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLS 236 Query: 240 ARIILIRKALAGELVSYG 257 + II ++ AGE V YG Sbjct: 237 SEIIGVQTLKAGERVGYG 254 >gi|213615581|ref|ZP_03371407.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 187 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 3/186 (1%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + I+ AL++N + L+ ++ AVVK NAYG G + A L + F V +E Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPD--ADAFGVARLE 61 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I +L G + + + + + + Sbjct: 62 EALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQEQLAALEAVELAEPVTVWM 121 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ +EA F + K + Q I+SH A AD+P QL+ F Sbjct: 122 KLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHFARADEPECGATEHQLDIFNAF 181 Query: 186 ISHYKG 191 G Sbjct: 182 CQGKPG 187 >gi|296272673|ref|YP_003655304.1| alanine racemase [Arcobacter nitrofigilis DSM 7299] gi|296096847|gb|ADG92797.1| alanine racemase [Arcobacter nitrofigilis DSM 7299] Length = 340 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 141/374 (37%), Gaps = 49/374 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ I+ +N ++ +G+ AVV KDNAYG G +I+ G++ V + Sbjct: 1 MSKIIINKRNYIHNLDIISKQAGSKEKIAVVLKDNAYGHGIIEISKIAKEFGIKKAVVKN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E +K+ + I H N I I +P + Sbjct: 61 LKEALKIEDFFEDIIILSEINFHTYSHTFHIVINSIEQIHKIP------------KNTNV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG +R G+S + + + L L+ I++H AD +S Q FR Sbjct: 109 HLKVDTGMHRNGISKNQLKEAIDGICRQNL-NLTGIMTHHRGADGLNSEFF-WQKRNFRL 166 Query: 185 LISHYKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQ 233 + K I L +S+ + N+ R GI+ YG + ++ Sbjct: 167 VKEEVKRICEQLFLPLPKFHSCNSAALFRTANFDDDFARVGIASYGYFENHPSFDKIDLK 226 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ A+ + R + V YGG K ++ +++ IGY DG+ + Sbjct: 227 PVLSLWAQKVTTRVLKKNQSVGYGGTYKTDKNIIVSTYDIGYGDGFLRINENQSYKTPKG 286 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 +LG+I+MD D D + + +F +A T Sbjct: 287 -------------YKVLGRISMDNLSLDSQD-------EEVCMFDD---ARALAKIHNTI 323 Query: 354 NYDLLVRIGTRYAK 367 +Y+++ + + + Sbjct: 324 SYEIVTTLSSELKR 337 >gi|324999413|ref|ZP_08120525.1| alanine racemase [Pseudonocardia sp. P1] Length = 253 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 23/253 (9%) Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRTL 185 DTG +R G E + ++ + SHLA AD+P Q R R Sbjct: 2 DTGLSRNGCPPDEWPGLVDDVAAAAAEGTCEVDAVWSHLARADEPGDPSIDAQAARLRAA 61 Query: 186 ISHY----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEA 240 SH LA+S+ ++ P+ H L RPGI+ YG P++ +T Sbjct: 62 ASHVRDRGFAPLVHLANSAALMTRPDLHLDLVRPGIAAYGLDPIAQPADSPLRPAMTVRG 121 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 R+ L++ AGE VSYG + +A+ +GYADG P ++ Sbjct: 122 RVALVKTVAAGEGVSYGHEWTAPGPRTLALVPLGYADGVPRRMNDGRRMR---------V 172 Query: 301 FIKGYMVPILGKITMDMTMFDIT--DSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 I + P+ G++ MD + D L + VGD +++FG + A GT + Sbjct: 173 RIGDTVRPVAGRVCMDQFVVDCGAPGELGVVVGDRVELFGTGDGGGPTAREWADELGTIH 232 Query: 355 YDLLVRIGTRYAK 367 Y+++ I R + Sbjct: 233 YEIVTGIKGRVRR 245 >gi|71423858|ref|XP_812596.1| alanine racemase 2 [Trypanosoma cruzi strain CL Brener] gi|70877396|gb|EAN90745.1| alanine racemase 2, putative [Trypanosoma cruzi] Length = 388 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 143/395 (36%), Gaps = 48/395 (12%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVEE 67 +++ L + N + ++G A +VK NAYG G K++ L+N GV F V S+ E Sbjct: 7 VEVCLRNIAYNVECIRRIAGKAELIPMVKGNAYGHGMGKVSEYLHNVCGVHTFGVASLGE 66 Query: 68 GVKLRLYTPQA-------------RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114 ++L P + G + + I Sbjct: 67 ALELIESQPSIAEKAQNEIFVFSDTEVLNEGCQSYYQPCGRWAVRLTPILGTLPQLKAFC 126 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + + L+++TG NRLGL E + + L L +A + + + Sbjct: 127 ASNAFNNTKLCLKLETGMNRLGLRFDELEEAVPILKQRGGVDLLLQHFGIAGSVERLAE- 185 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGP-----NYHFQLTRPGISLYGGTDKINKS 229 E F+ + ++S G RPGI LYG +K+ Sbjct: 186 TLNHYEAFKNAKKFLHDSGVEVRATSVSNSGAVEQRIGLEETYIRPGIMLYGPRSVTSKN 245 Query: 230 HPMQTVVTAE-ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 + +++ GE V Y + DS+I + IGYADG+ T G+ Sbjct: 246 LWNGKFASCFYTKVLHHFPLRKGEGVGYDLT-PVKADSVIVMLPIGYADGFLCTYKGMPI 304 Query: 289 EHSPSVFLGGKGFIKGYMVPIL----GKITMDMTMF---------DITDSL-SIEVGDYI 334 + +P PI+ G+I MDM +I + + +++ I Sbjct: 305 KVTPEDAAE----------PIIGTVHGRINMDMAAVVVYPEEVGKNIGNIMAAVKKESRI 354 Query: 335 QIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 ++G DI ++ A++ G + L + R + Y Sbjct: 355 HVWGDDI--EEKAVSVGAIPHQLTCGLSIRVPRIY 387 >gi|303242258|ref|ZP_07328745.1| Alanine racemase [Acetivibrio cellulolyticus CD2] gi|302590168|gb|EFL59929.1| Alanine racemase [Acetivibrio cellulolyticus CD2] Length = 132 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 16/129 (12%) Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 + +SYG K R+S IA IGYADGY L+ G+ + G Sbjct: 1 KDVETDTCISYGRIFKTQRESRIATLPIGYADGYTRLLTN-----------KGRVLVNGQ 49 Query: 306 MVPILGKITMDMTMFDITDS-LSIEVGDYIQIF----GPDIKLDDVALASGTTNYDLLVR 360 VPI+GKI MD M D+TD + VGD + +F G +I ++D+A GT NY++ Sbjct: 50 SVPIVGKICMDQCMIDVTDVQGEVNVGDEVVLFGSQNGSEISIEDLASKIGTINYEIACI 109 Query: 361 IGTRYAKFY 369 IG R + Y Sbjct: 110 IGKRIPRVY 118 >gi|50254060|gb|AAT72154.1| alanine racemase [Borrelia hermsii] Length = 326 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 137/341 (40%), Gaps = 25/341 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M ++ + I L L +N S + A +K +AYG G + L GV F Sbjct: 1 MTKHK--EIIITLQNLNHNLTSNKNPYSSRELVATLKSDAYGHGLIQTFKFLKEKGVNYF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCG 119 + +++ +KL+ I + K + N+ P ++ L+ + Sbjct: 59 GLFWIDDALKLKKIDKNVNILLYINTDKNAIKNLVKFNITPFVADSQYLSLIEQECRKQN 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L+VD G NR G+ +++AL+ N K + I +HL ++ + + Q+ Sbjct: 119 KKIKAHLKVDVGMNRYGIKIEDALNLAIQIQNSKSIEFEGICTHLPTTEN--TKITQTQI 176 Query: 180 ERFRTLIS--HYKGIEASLASSSGILLGPNY----HFQLTRPGISLYGGTDKINKSHPM- 232 E+F I+ K I +S NY F + RPG+ LYG N S+ Sbjct: 177 EKFVYFINKLKSKNINPKFIHASNSEHIANYKISEKFNMVRPGLILYGYHPNPNISNNNL 236 Query: 233 --QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 + V+ ++II ++ GE +SY G D I + +GY DG P S Sbjct: 237 QLKPVLNLYSKIIFLKNIKKGEQISYSGLFTAKEDMQIGLIPVGYFDGIPQNTSN----- 291 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331 I+ I GKI M++++ +I L I +G Sbjct: 292 ------NFYCIIRDRKCFIKGKICMNISIIEIPKDLKINIG 326 >gi|253583923|ref|ZP_04861121.1| alanine racemase [Fusobacterium varium ATCC 27725] gi|251834495|gb|EES63058.1| alanine racemase [Fusobacterium varium ATCC 27725] Length = 351 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 75/371 (20%), Positives = 139/371 (37%), Gaps = 24/371 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N +++ I+ L +N + L G VVK NAYG G E I ALY+ G ++ Sbjct: 1 MVINS-IKMIINQKNLLSNIDYLKKLKGK-NILPVVKANAYGHGVELIIKALYDGGQREV 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V E + + + +L G ++I + + + + + + Sbjct: 59 AVARYVEAENILKMNLGSDLKILVFESIGDIELIKNNPNLEIAINDF-NELKDLIKAGIP 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 S+ L++D GF R G+SL E + + L + A + + + Sbjct: 118 SNRMQLKIDLGFGRNGISLSEIPELEKFTNENNLKFKGVFSHLFAVNYEDGLELIDL-FS 176 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 I K L +S+ ++ R G+ YG + ++ V + E Sbjct: 177 DVVNSIGKDKFEMIHLQNSAAVMNYNCDIATHIRVGMLTYGLQEVGYFDPNLKQVFSLEG 236 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSL--IAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++ +R + V+Y + L ++ +A IGY DG+ Sbjct: 237 QVAGVRDIEDHKYVAYELKDDLDIENCKYLAKIKIGYGDGFL------------KRNEKS 284 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 K I I ++TMD T ++ S++ GD + ++ + V +G Y+LL Sbjct: 285 KCIINNKEFKIA-QVTMDNTFIEV--DASVKEGDRVLLYND---ITKVVNFTGMNIYELL 338 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 339 TILSPRIPRVY 349 >gi|313619768|gb|EFR91373.1| alanine racemase [Listeria innocua FSL S4-378] Length = 199 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 24/207 (11%) Query: 173 HVNSVQLERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 QL +F+ ++S + +S+ LL P F R GIS+YG T + Sbjct: 5 SYFEQQLAKFQAILSSLTTRPTFVHTANSAASLLQPQIDFDAIRFGISMYGLTPSTEIKN 64 Query: 231 PMQTVVTA----EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 + + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 65 SLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEKEWVATLPIGYADGLIRHYSGF 124 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 ++G PI+G+I MD T+ + + G + I G D + Sbjct: 125 ------------HVLVEGERAPIIGRICMDQTIIKLPREF--QTGTKVTIIGSDHGNKVT 170 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 DD A GT NY++ + R + Y Sbjct: 171 ADDAAEYLGTINYEVTCLLTERIPRKY 197 >gi|309806961|ref|ZP_07700943.1| alanine racemase [Lactobacillus iners LactinV 03V1-b] gi|308166581|gb|EFO68778.1| alanine racemase [Lactobacillus iners LactinV 03V1-b] Length = 265 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 28/266 (10%) Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF-NKKLGQLSLIISHLACADDPSSHVNS 176 G L +D+G R+G + +A ++ + + + +H + AD Sbjct: 10 SGTKLKIHLAIDSGMGRIGFNEDDAFLKANDYLLSHPEYDVEGMFTHFSTADCHDLEYFD 69 Query: 177 VQLERFRTLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK-------IN 227 Q+++F K +S+ + L R GI++YG I Sbjct: 70 SQVKKFDHFKKMLRIKPKYIHCDNSAASIFNRQVDSDLVRYGIAMYGLNPSSAPHGIEIQ 129 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 +Q + + ++ +++ A V YG K D I +GYADG+ ++ G Sbjct: 130 PKFTLQPALCFVSELVFVKQIHANNAVGYGATFKADTDEWIGTVPVGYADGWQRSMQGF- 188 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKL 343 K + PI+G++ MD M + + + + G +++ D + Sbjct: 189 -----------KVKVGDVYCPIVGRVCMDQFMVLLPEKMPV--GTPVELISADAKAPNNI 235 Query: 344 DDVALASGTTNYDLLVRIGTRYAKFY 369 VA + T +Y++ + R + Y Sbjct: 236 KAVADYANTIHYEIACLLSDRVPREY 261 >gi|283954466|ref|ZP_06371986.1| alanine racemase [Campylobacter jejuni subsp. jejuni 414] gi|283794083|gb|EFC32832.1| alanine racemase [Campylobacter jejuni subsp. jejuni 414] Length = 328 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 141/367 (38%), Gaps = 51/367 (13%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A ++N + GN R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEHNLRYIARKIGNFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ L+ Sbjct: 61 ---------EEEAQEIEEFFENILILSHRPHGNENSKFIYALNDISQIKDYKQGAKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ + VQ E F+ Sbjct: 112 IDTGMHRNGVCTEDLEYAIGLIQSSNL-KLTGMFTHFASADEMNGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ +L G + R G+ +G ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSHNSAALLRGNIPEDEYCRIGLVQFGYG-----DLNLKKVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI- 302 R G+ + YGG T+D +A +GYADG + G K I Sbjct: 225 SQRVLRKGQSIGYGGIFTATKDLEVATYDLGYADGLFR-------------YSGKKELIL 271 Query: 303 -KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 G + +LGK++MD + G+ I +F D A T +Y++LV++ Sbjct: 272 GNGKI--MLGKMSMDSFSCE-------NSGEEICVFND---ADVWADFFHTISYEILVKL 319 Query: 362 GTRYAKF 368 + Sbjct: 320 NPNIQRV 326 >gi|152993699|ref|YP_001359420.1| alanine racemase [Sulfurovum sp. NBC37-1] gi|226711065|sp|A6QC54|ALR_SULNB RecName: Full=Alanine racemase gi|151425560|dbj|BAF73063.1| alanine racemase [Sulfurovum sp. NBC37-1] Length = 336 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 146/369 (39%), Gaps = 45/369 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I+ +N + + +G+ + A V+KDNAYG G + +A G++ V S Sbjct: 1 MATIIINKENFYHNLNQIALKTGSVEKIAIVLKDNAYGHGLQLMASLSAEFGIRHAVVRS 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +EE ++ R ++ G H ++ I L + + + + Sbjct: 61 MEEAKNIKELF---RTVLVLGDHAVKDDICS-----------FALNCLNDIENAELGARV 106 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE---- 180 L+VDTG +R G++ +E K L +L +++H AD+ S + Q + Sbjct: 107 ELKVDTGMHRNGIAPEELERALQMIQKKDL-ELVGVMTHFRSADEMGSELFWQQKQFASV 165 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTA 238 + R + + + +S+ L + L R GI YG + P++ V++ Sbjct: 166 KERVKEAGFMNVRFHSHNSAATLRSKTFDEDLVRVGIGAYGYNELPDVFDDIPLKPVLSL 225 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A+ I R+ GE V YGG + ++ +GY DG+ S Sbjct: 226 SAKKIATRRLKKGERVGYGGDFTAPEEMTVSTYDLGYGDGWCRGDS-------------A 272 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 +I +PILG+++MD + S + + I K A GT +Y++ Sbjct: 273 HPYITAEGLPILGRVSMDFIIL-----ESAKE--ELVIMNDAQKA---ARQFGTISYEMT 322 Query: 359 VRIGTRYAK 367 + + Sbjct: 323 TALSINIER 331 >gi|118496926|ref|YP_897976.1| alanine racemase [Francisella tularensis subsp. novicida U112] gi|194324153|ref|ZP_03057927.1| alanine racemase, C- domain family [Francisella tularensis subsp. novicida FTE] gi|118422832|gb|ABK89222.1| alanine racemase [Francisella novicida U112] gi|194321600|gb|EDX19084.1| alanine racemase, C- domain family [Francisella tularensis subsp. novicida FTE] Length = 351 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 77/363 (21%), Positives = 143/363 (39%), Gaps = 23/363 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+ +K+N + + +++ +VK NAYG+G E I N V + + +EE Sbjct: 7 VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKV-TNNLVDAYGIARIEEY 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 L+ I L GI+ N+IP++ + + Y K S L Sbjct: 66 YVLKSLGCTKDIIFLSGIYAECFDFKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDF 124 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D G R G + + + N ++L + + ++ Sbjct: 125 DCGMGRFGFYKDDFIKHLYKLKNAGFSNITLFSHIPTGYNGFDKSKKYIDKIL---SLAT 181 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 ++ + ++S L ++ + RP ++ G + + ++ + +A II IR Sbjct: 182 QTKLKYTFSNSPVSLFSYDFQQEYIRPCSAILGYDQEPQE---IKFSLALKACIISIRDI 238 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G+ +SY + RD+ +A+ IGYADG + IK P Sbjct: 239 PKGQYISYANEYFCDRDTTVAILNIGYADGL-----------GCKIHKDSYLIIKDTKCP 287 Query: 309 ILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365 IL I MD DI+ +++ D I++FGP+ + L+ A T + L ++ R Sbjct: 288 IL-AINMDYLYIDISAIKHQLKILDMIELFGPNSLSLEQHASMYNITKDEALTKLNALRV 346 Query: 366 AKF 368 K Sbjct: 347 KKI 349 >gi|118474927|ref|YP_892713.1| alanine racemase [Campylobacter fetus subsp. fetus 82-40] gi|118414153|gb|ABK82573.1| alanine racemase [Campylobacter fetus subsp. fetus 82-40] Length = 337 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 137/373 (36%), Gaps = 48/373 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ + TA +N +++ G+ R AV+KD+AYG G +A G++ V S Sbjct: 1 MSKIVLSKTAYIHNLTQISSKIGSKDRIIAVLKDDAYGHGAVLMAGIASGFGIKWACVKS 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 ++E +++ + I ++ + + S L Sbjct: 61 IDEAIEISPFFKNIIILSHIPNGKENDEF------------IYAINDLSGLDVIKSGISV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +DT +R G+ + E N + ++ +H +D+ S VQ F Sbjct: 109 HLAIDTMMHRNGIGIDEIET-AFNIAKNRSIRICGAYTHFRSSDEISGDY-YVQKANFLK 166 Query: 185 ---------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + +S+ I + + R GI +G + + ++S ++ V Sbjct: 167 AKIKLKSLFKKNGVDKPMFHSHNSAAIERTNGFDDEFVRAGIVQFGYS-QFDESLNLKKV 225 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ A I R AG+ V YGG +D IA +GY DG D Sbjct: 226 LSLWADRISKRVLKAGQSVGYGGAFTAKKDINIATYDLGYGDGLLRYNGKGDLH------ 279 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G ILGK++MD + GD I +F A T +Y Sbjct: 280 -----LANGEK--ILGKMSMDSF-------SCADSGDQICVFDD---ARVWAKFFDTISY 322 Query: 356 DLLVRIGTRYAKF 368 D+LV++ ++ + Sbjct: 323 DILVKLSSKIKRV 335 >gi|57504964|ref|ZP_00370916.1| alanine racemase, putative [Campylobacter coli RM2228] gi|305432037|ref|ZP_07401204.1| alanine racemase [Campylobacter coli JV20] gi|57019236|gb|EAL55942.1| alanine racemase, putative [Campylobacter coli RM2228] gi|304445121|gb|EFM37767.1| alanine racemase [Campylobacter coli JV20] Length = 329 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 141/367 (38%), Gaps = 50/367 (13%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KI+ A ++N + G+ +R V KDNAYG G + +AP GV V + +E Sbjct: 4 IKINQKAYESNLKIIAEKIGSFSRLICVFKDNAYGHGAKILAPIASTLGVNFVAVKNEKE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 +L + I + K I+ N I I++ T L+ Sbjct: 64 AYELEDFFDNILILSHHPHGKENSKFIYALNDIDKINAYQNDTRI------------HLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DTG +R G+ +++ + L +L I +H A AD+ + +Q E+F Sbjct: 112 IDTGMHRNGVCVEDLNEALLKIKCSAL-KLEGIFTHFAGADEMDASFF-IQREKFSKAKD 169 Query: 188 HYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 K I S S + +L R G++ +G D+ K V++ A Sbjct: 170 IAKQIYKNLIFHSHNSPALFRAVKIPEDELCRTGLAQFGYGDESLKK-----VLSLYAHR 224 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + R+ G+ V YGG T IA +GYADG G + Sbjct: 225 LSHRELQIGQSVGYGGAFSATEKIKIATYDLGYADGLFR------------YDGKGDLLL 272 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 ILGKI+MD S + G I +F D A T NY++LV++ Sbjct: 273 ANKQ-KILGKISMDSF--------SCQDFGKEICVFDN---ADVWADFFNTINYEILVKL 320 Query: 362 GTRYAKF 368 + Sbjct: 321 HPDIPRV 327 >gi|222824133|ref|YP_002575707.1| alanine racemase [Campylobacter lari RM2100] gi|222539355|gb|ACM64456.1| alanine racemase [Campylobacter lari RM2100] Length = 335 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 129/374 (34%), Gaps = 52/374 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +KID A + N + + +G + V KDNAYG G + +AP GV V + Sbjct: 1 MAYIKIDRLAYEYNLDLIASKAGGYEKVICVFKDNAYGHGAKLLAPIARAKGVNFVAVKN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E +L I + EK + L + + + Sbjct: 61 EVEAKELENIFDNILILSHHPHGNESEKF------------IYALNDKNDIKKLKKNTKI 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L +DT +R G+ L+E + + L ++ H A +D+ + VQ + F+ Sbjct: 109 HLVIDTNMHRNGILLEEIQEVLQGLKSNNLILH-GVMMHFAGSDEVDASYF-VQKQNFQH 166 Query: 185 LISHYKGI-------EASLASSSGILLGPNYHFQ--LTRPGISLYGGTDKINKSHPMQTV 235 + + +S L N R G+ +G S ++ V Sbjct: 167 AKKIIYNLLQKEAKSLVFHSHNSEALFRANTLEDDEYCRVGLVQFGYAYF---SKDLRKV 223 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ A + R G+ V YGG D IA +GYADG D Sbjct: 224 LSLWAEKLSQRVLKKGQSVGYGGMYSAKEDIEIATYDLGYADGLLRYDGKKDFF------ 277 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ-IFGPDIKLDDVALASGTTN 354 G ILGK++MD S E + + + +A T N Sbjct: 278 -----LPNGKK--ILGKMSMDSF--------SCENDSEVICVLND---ANVMASFFNTIN 319 Query: 355 YDLLVRIGTRYAKF 368 Y++LV++ + Sbjct: 320 YEILVKLSPNLKRI 333 >gi|208780376|ref|ZP_03247717.1| alanine racemase, C- domain family [Francisella novicida FTG] gi|208743744|gb|EDZ90047.1| alanine racemase, C- domain family [Francisella novicida FTG] Length = 351 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 142/362 (39%), Gaps = 23/362 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+ +K+N + + +++ +VK NAYG+G E I N V + + +EE Sbjct: 7 VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKV-TNNLVDAYGIARIEEY 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 L+ I L GI+ N+IP++ + + Y K S L Sbjct: 66 YVLKSLGCTKDIIFLSGIYAECFDFKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDF 124 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D G R G + + + N + L + + ++ Sbjct: 125 DCGMGRFGFYKDDFIKHLYKLKNAGFSNIILFSHIPTGYNGFDKSKKYIDKIL---SLAT 181 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 ++ + ++S L ++ + RP ++ G + + ++ + +A II IR Sbjct: 182 QTKLKYTFSNSPVSLFSYDFQQEYIRPCSAILGYDQEPQE---IKFSLALKACIISIRDI 238 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 G+ +SY + RD+ +A+ IGYADG + IK P Sbjct: 239 PKGQYISYANEYFCDRDTTVAILNIGYADGL-----------GCKIHKDSYLIIKDTKCP 287 Query: 309 ILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365 IL I MD DI+ +++ D I++FGP+ + L+ A T + L ++ R Sbjct: 288 IL-AINMDYLYIDISAIKHQLKILDMIELFGPNSLSLEQHASMYNITKDEALTKLNALRV 346 Query: 366 AK 367 K Sbjct: 347 KK 348 >gi|241667310|ref|ZP_04754888.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 351 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 23/363 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+ +K+N + + +++ +VK NAYG+G E I + V + + ++E Sbjct: 7 VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGIGIENIYKVTNDL-VDAYGIARIDEY 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 L+ I L GI+ N+IP++S+V + Y K S L Sbjct: 66 YVLKNLGCTKDIVFLSGIYAECFDFKIPKNVIPILSNVLLIKDYIKYED-DKSKQVMLDF 124 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D G R G + + + L + + L++ Sbjct: 125 DCGMGRFGFYRDDFIKHLDMLKISGFSNIILFSHIPTGYNGYDRSKKYIDKIL---LLAE 181 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 ++ + ++S L ++ + R ++ G + + ++ ++ +A II IR Sbjct: 182 ETKLKYTFSNSPVSLFDTDFLQEYIRSSSAVLGYDQEPKE---IKFSLSLKACIISIRDI 238 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 GE +SYG + +D+ +A+ IGYADG + I P Sbjct: 239 PKGEYISYGNEYFCNKDTTVAILNIGYADGL-----------GCEIHHDSYLLINATKCP 287 Query: 309 ILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365 IL I MD DI+ +++ D I++FGP+ + L+ A T + L ++ R Sbjct: 288 IL-SINMDYLYVDISAIKHQLKMLDMIELFGPNSLSLEQHANMYNITKDEALTKLNALRV 346 Query: 366 AKF 368 K Sbjct: 347 RKI 349 >gi|154267917|gb|ABS72053.1| VanTG-like protein [Ruminococcus gauvreauii] Length = 570 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + +++DL LK+N ++ A+ R AVVK NAYG G + A L GV F Sbjct: 342 RADRAWIEVDLNNLKHNARTLSKAMPPGCRLMAVVKANAYGHGAFETAVCLEQIGVTSFA 401 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V +++EG+ LR + + I +L P + K + LI + P + G Sbjct: 402 VATIDEGIALRRWGIRGDILILGFTDPSRAKELHRYRLIQTLIDAPYAKRLA---RQGYI 458 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD--DPSSHVNSVQL 179 +++DTG +RLG + E + ++ L + A + Q Sbjct: 459 IRSHIKIDTGMHRLGFGVNERSEILRTVRSRNLNVCGIYTHLCAADSLLEDDVKFTRRQT 518 Query: 180 ERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLYG 221 E F L+ K E + SS G+L P R GISLYG Sbjct: 519 EVFFELLEWLKEQEVTIPDIHIQSSYGLLNYPELGCSYVRAGISLYG 565 >gi|241667406|ref|ZP_04754984.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875955|ref|ZP_05248665.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841976|gb|EET20390.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 427 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 70/376 (18%), Positives = 138/376 (36%), Gaps = 45/376 (11%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPA-LYNAGVQDFFVTSVE 66 ++ID++A K+N + ++ G+ + AV+K +AYG G + + A + ++ V + Sbjct: 42 VEIDVSAYKHNLKVVKSIIGDDVKLCAVMKSDAYGHGLDNLIDATVSSSAVDCIAAVDNK 101 Query: 67 E-GV-------------KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR+ + + + I + I S Sbjct: 102 EFAIISPKIQQSGRDITALRIAPVTKSELIQAINNGWDIEEIIGSYEQAKIISDTAQQM- 160 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 S+++ V ++ ++T R+ E + N K+ + + ++ + Sbjct: 161 SEILGKKVIIKVSINIETAMGRMAFRKVEDIKKAMKLPNIKVVGVMTHFAKDYESESVAE 220 Query: 173 HVNSVQLERFRTLISH---YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-----D 224 QL +F ++S +G +A+S P + R G +YG D Sbjct: 221 PATKQQLAKFDEIVSQLDLPEGTIQHVANSGAAAKYPWARRDMVRAGSLIYGEDLDDLQD 280 Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLT--RDSLIAVAAIGYADGYPLT 282 ++ P+ +E I + R ++Y ++ R S A GY G+P Sbjct: 281 PKHELRPVMKSFRSEVAI-IERDIPPHSPINYDAEQYTRSDRKSTTATLRTGYNYGFP-- 337 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS---IEVGDYIQIFGP 339 + + I G P++GK +M+M + DITD ++VGD + G Sbjct: 338 --------QRAYKSKMQVIIDGVKYPVIGKTSMNMLVVDITDEPKDKRVKVGDQALLVGK 389 Query: 340 ----DIKLDDVALASG 351 I A + Sbjct: 390 YGDNYISWQQFAQQNN 405 >gi|283956250|ref|ZP_06373730.1| alanine racemase [Campylobacter jejuni subsp. jejuni 1336] gi|283791970|gb|EFC30759.1| alanine racemase [Campylobacter jejuni subsp. jejuni 1336] Length = 328 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 137/365 (37%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ L+ Sbjct: 61 ---------EEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAINLIRSSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G + ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGES-----NLKRVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG + V GK Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKV--- 276 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 ILGK++MD + G+ I +F D A T NY++LV++ Sbjct: 277 -----ILGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|315636229|ref|ZP_07891483.1| alanine racemase [Arcobacter butzleri JV22] gi|315479590|gb|EFU70269.1| alanine racemase [Arcobacter butzleri JV22] Length = 340 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 140/374 (37%), Gaps = 49/374 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ + L N ++ +G+ AVV KDNAYG G +IA G++ V + Sbjct: 1 MAKILLSKENLFYNLDVISKKAGSKEKVAVVLKDNAYGHGLVEIATLAKEFGIKKAVVRT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +++ +K+ + H N + + Sbjct: 61 IDDALKIEKLFDFILVLAEKSFHTYSHTFHIALNS------------LEDIDKLPNNSNV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VDTG +R G+ ++ ++K +++ + +H AD+ S+ Q E F Sbjct: 109 HIKVDTGMHRNGIYPEDLEK-AFLGLSEKNIKVTGVFTHHRGADELSTDFF-WQKENFSL 166 Query: 185 LISHYKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--Q 233 + K I L +S+ + N+ TR GI+ YG D + + + Sbjct: 167 VKKSVKNICEKLFLPIPLFHSCNSAALFRTENFDEDFTRVGIATYGYLDDSDVFNFPKLK 226 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ A + R G+ V YGG T D L++ +GY DG+ +E Sbjct: 227 PVMSLWASRLSTRILKKGQSVGYGGTFTTTEDMLVSTYDVGYGDGFLR-----LNERKSY 281 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G +LG+++MD + TD + + IF + ++A T Sbjct: 282 TTPKG--------YKVLGRVSMDNLSLN-TDD------EKVCIFDD---VRELAKIHDTI 323 Query: 354 NYDLLVRIGTRYAK 367 Y++ + K Sbjct: 324 TYEITTTLNPNIEK 337 >gi|317133108|ref|YP_004092422.1| alanine racemase [Ethanoligenens harbinense YUAN-3] gi|315471087|gb|ADU27691.1| alanine racemase [Ethanoligenens harbinense YUAN-3] Length = 364 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 76/349 (21%), Positives = 122/349 (34%), Gaps = 23/349 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPAL-YNAGVQDFFVTS 64 L + + N +M + N V+K NAYGLG ++A L A V F V+ Sbjct: 1 MSTLVVQTGHILANLEAMRKHT-NVPVIPVLKGNAYGLGDVEVARLLREKADVHLFAVSR 59 Query: 65 VEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122 +EE +L+ P + + + I L + S + G Sbjct: 60 LEEAKRLKEALPDEEIFLLSPYGTEKEAEEIVRLGLTATVGSYGSAVLLNGLSEKAGTRC 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L+ DTG R G +EA + K +++ SH + + QL+R Sbjct: 120 RVHLKFDTGLGRSGFLPEEAEKAVQAAKYLKNLEIAGCFSHFSNSFGKDEKGVRTQLDRL 179 Query: 183 RTLIS--HYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + ++ G+E + + +L P+ R G +L G NK + V Sbjct: 180 QHCVAALKNAGVEPGMLHIAASNAAILYPSARLDAVRCGSALLGRVGVRNK-LGLHKVGR 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL------------SG 285 E I +R AG V YG + + IA GYADG L G Sbjct: 239 LECPISDVRWLPAGHNVGYGNTYTTKKPARIATIQAGYADGLFLQKMRDAFRTRDILRDG 298 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + I G +LG++ M + D+++ GD Sbjct: 299 WHDFRALFRRPSLHCTINGQPARLLGRVGMCTVVADVSNI-QCGAGDMA 346 >gi|57242224|ref|ZP_00370163.1| alanine racemase, putative [Campylobacter upsaliensis RM3195] gi|57016904|gb|EAL53686.1| alanine racemase, putative [Campylobacter upsaliensis RM3195] Length = 327 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 122/366 (33%), Gaps = 50/366 (13%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + +D A K+N + +G + V KDNAYG G +AP GV V E Sbjct: 4 ITLDSNAYKHNLSYIATRAGGYDKLICVFKDNAYGHGICLLAPVAKACGVNFVAVKDENE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 L Y +L G E + F + L S + L+ Sbjct: 64 AYLLEKYFDNI--LILSHRPTGNENLNF----------IYALNEPSSFAKFKKNTRIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DT +R G+ + L +H AD+ + + Q F+ Sbjct: 112 IDTNMHRNGI---DVNGLEKFLKELCHLNLEGAFTHFMSADELDASYFT-QKYNFQKAKK 167 Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 K + +SS + G ++ R G+ +G ++ V+ A Sbjct: 168 IIKNFTQNTLTFHSFNSSALFRGKMPQDEMCRVGLVQFGYG-----DKGLKKVLRLYAHK 222 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + R G+ V YGG IA +GYADG + Sbjct: 223 LSSRVLEKGQSVGYGGAYVANEPLQIATYDLGYADGLFRYDGKGQLK-----------LA 271 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +LGK++MD + + G+ I + + A T NY++LV++ Sbjct: 272 NGK--EMLGKMSMDSFSCE-------DSGEEICVLDD---ANLWADFFHTINYEILVKLN 319 Query: 363 TRYAKF 368 + Sbjct: 320 ANIKRV 325 >gi|257466861|ref|ZP_05631172.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563] Length = 360 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 66/385 (17%), Positives = 125/385 (32%), Gaps = 50/385 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + F L+++ A+ +N + + V+K NAYG G ++A AGV Sbjct: 1 MVEHSFY-LEVNREAILHNINVLRKW-KRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQV 58 Query: 61 FVTSVEEGVKLRL------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114 V EE K+ + + +L G + D IS Sbjct: 59 AVARYEEAKKILEDSYFQSLSKECSFQILIFESIGDFS-LLDHFPRMDISINSLEELEKA 117 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L +++D F R G+ ++ F + L + +C+ + Sbjct: 118 LEYHISPKKMQVKIDFSFGRNGIQEKDLPFFIKKVKEENLTFKGIFSHLFSCSYEDGLLC 177 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + S++ + + R G+ YG + +Q Sbjct: 178 IKKFSSLVQEMGKERFDRIHLQNSAASYNYDCDIVTDI-RVGMLTYGLQEPGYFHEELQR 236 Query: 235 VVTAEARIILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +I IR + ++Y G++ + A IGYADG+ Sbjct: 237 AFCLKGKIDSIRCLENMKYLAYEGKEDVGMKSAKWAAKIKIGYADGF------------G 284 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----------GPDIK 342 G I+ I ++TMD T ++ ++VGD + +F G +I Sbjct: 285 KENENGSCIIQRKEYRIA-EVTMDNTFLEV--DERVKVGDEVLLFYNPTKTKQETGKEI- 340 Query: 343 LDDVALASGTTNYDLLVRIGTRYAK 367 ++ L + R + Sbjct: 341 ------------HEHLTGLTNRLPR 353 >gi|294853874|ref|ZP_06794546.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] gi|294819529|gb|EFG36529.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] Length = 152 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT 282 + H + V+T AR+I +R G V YGG IA A+GYADG + Sbjct: 3 HENKKPKHSILPVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLFRS 62 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPD 340 LS G F +PI+G+++MD D+T +++G +++ GP Sbjct: 63 LSN-----------KGAAFFGDTRLPIIGRVSMDSITLDVTSLPEGTLKLGSLVELIGPH 111 Query: 341 IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +L+DVA T Y++L +G RYA+ Y Sbjct: 112 QRLEDVARDCDTIPYEILTALGNRYARVY 140 >gi|157737037|ref|YP_001489720.1| alanine racemase [Arcobacter butzleri RM4018] gi|226711026|sp|A8ESX7|ALR_ARCB4 RecName: Full=Alanine racemase gi|157698891|gb|ABV67051.1| alanine racemase [Arcobacter butzleri RM4018] Length = 340 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 74/374 (19%), Positives = 139/374 (37%), Gaps = 49/374 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ + L N ++ +G+ AVV KDNAYG G +IA G++ V + Sbjct: 1 MAKILLSKENLFYNLDVISKKAGSKEKVAVVLKDNAYGHGLVEIATLAKEFGIKKAVVRT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +++ +K+ + H N + + Sbjct: 61 IDDALKIEKLFDFILVLAEKSFHTYSHTFHIALNS------------LEDIDKLPNNSNV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 ++VDTG +R G+ ++ ++ +++ + +H AD+ S+ Q E F Sbjct: 109 HIKVDTGMHRNGIYPEDLEK-AFLGLLERNIKVTGVFTHHRGADELSTDFF-WQKENFSL 166 Query: 185 LISHYKGIEASL---------ASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPM--Q 233 + K I L +S+ + N+ TR GI+ YG D + + + Sbjct: 167 VKKSVKNICEKLFLPIPLFHSCNSAALFRTENFDEDFTRVGIATYGYLDDSDVFNFPKLK 226 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ A + R G+ V YGG T D L++ +GY DG+ +E Sbjct: 227 PVMSLWASRLSTRILKKGQSVGYGGTFTTTEDMLVSTYDVGYGDGFLR-----LNERKSY 281 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 G +LG+++MD + TD + + IF + ++A T Sbjct: 282 TTPKG--------YKVLGRVSMDNLSLN-TDD------EKVCIFDD---VRELAKIHDTI 323 Query: 354 NYDLLVRIGTRYAK 367 Y++ + K Sbjct: 324 TYEITTTLNPNIEK 337 >gi|34557112|ref|NP_906927.1| alanine racemase [Wolinella succinogenes DSM 1740] gi|34482827|emb|CAE09827.1| ALANINE RACEMASE [Wolinella succinogenes] Length = 342 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 51/377 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L+I+ A +N + G+ AVV KDNAYG G ++A AG+ FV + Sbjct: 1 MAELRINSQAFFHNLKLLANHVGSKEKVAVVLKDNAYGHGLLEMALLCKEAGIASAFVKN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E +++ A F G + N+ + S+ Q+ Sbjct: 61 EAEAIRI------APYFESVTALYGDVESKSPANVWVALHSLEQIRRI------PKGRSV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR- 183 L+VDTG NR G+ +E + L ++ + D+ S S Q RF Sbjct: 109 ELKVDTGMNRNGIMEEELFVALEAIRAQGLILCGVMAHN-GYGDELGSEFFSQQR-RFEG 166 Query: 184 -----TLISHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPM 232 + G+ SSSG L N L R GI++YG + + Sbjct: 167 VRARVEEYAREHGLPRPRFHALSSSGALRSRNIQDDLVRFGIAIYGYLCAHPLVVSEIGL 226 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRD-SLIAVAAIGYADGYPLTLSGLDSEHS 291 + V++ AR I + G + YGG+ +L + ++ +GY DG+ +EH Sbjct: 227 RPVLSLWARRITTKSLPKGARIGYGGKSELEEEAKKVSTYDVGYGDGFYR-----LNEHH 281 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 + G+ IL +++MD + + + + ++A Sbjct: 282 KLLTAQGE--------RILPRVSMDCLSV-------VGEREEVCLM---EDASELARLFD 323 Query: 352 TTNYDLLVRIGTRYAKF 368 T Y++L R + Sbjct: 324 TIPYEVLTRFSPFLKRV 340 >gi|317121371|ref|YP_004101374.1| alanine racemase [Thermaerobacter marianensis DSM 12885] gi|315591351|gb|ADU50647.1| alanine racemase [Thermaerobacter marianensis DSM 12885] Length = 514 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 64/364 (17%), Positives = 113/364 (31%), Gaps = 37/364 (10%) Query: 9 LKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +++DL L N ++ R AVVK + YGLG E A L AG ++E Sbjct: 16 IEVDLDVLAANLAAVRRFVRPGTRILAVVKGDGYGLGAEMAARTLVAAGADGLGTDTLEA 75 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV------- 120 ++LR A I V + P L + L ++ Sbjct: 76 ALRLRRAGITAPILVFQPVDPALAHHWVREGLTATVHDETTLRRLAQAAESARAGQAART 135 Query: 121 -----SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 L+VD GF R G + + ++ + +H A P + Sbjct: 136 GSPPGPCAVHLEVDMGFGRGGFHPDRVAAALAEAQSLPGIRVEGLYAHFPTAARPGLALR 195 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINKSHPM 232 + +G+ L + L + + R G LYG + + + Sbjct: 196 LLDRFLRLVQRLEQQGLRPPLVHCAESHLLVLASHAQLDMVRVGNLLYGYAPRAARRAGL 255 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP-----LTLSGL- 286 + + + A L + +AV +G ADG S Sbjct: 256 AVRPPSRLVVRVGAVRRAASLDPGYRGGWARPGAPVAVLPVGLADGLRPVREARFWSDRL 315 Query: 287 --------------DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332 + + G + + G VP+ G+ M+ + D T +E G Sbjct: 316 VILARRLLGALGASRVLGAAGLPPGPRLRVGGREVPLRGEFMMNHCLLDATGL-DLEPGQ 374 Query: 333 YIQI 336 +++ Sbjct: 375 EVEL 378 >gi|86152054|ref|ZP_01070266.1| alanine racemase [Campylobacter jejuni subsp. jejuni 260.94] gi|315124401|ref|YP_004066405.1| alanine racemase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840839|gb|EAQ58089.1| alanine racemase [Campylobacter jejuni subsp. jejuni 260.94] gi|315018123|gb|ADT66216.1| alanine racemase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 328 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 135/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ L+ Sbjct: 61 ---------EEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAIDLIQSSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKKVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG + V GK Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKVM-- 277 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 278 ------LGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|57237734|ref|YP_178982.1| alanine racemase [Campylobacter jejuni RM1221] gi|81819521|sp|Q5HUQ3|ALR_CAMJR RecName: Full=Alanine racemase gi|57166538|gb|AAW35317.1| alanine racemase [Campylobacter jejuni RM1221] gi|315058345|gb|ADT72674.1| Alanine racemase [Campylobacter jejuni subsp. jejuni S3] Length = 328 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 134/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S+ L+ Sbjct: 61 ---------EEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQAKKYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAIDLIQSSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG + V GK Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKVM-- 277 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 278 ------LGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|157415162|ref|YP_001482418.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81116] gi|226711032|sp|A8FLV4|ALR_CAMJ8 RecName: Full=Alanine racemase gi|157386126|gb|ABV52441.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81116] gi|307747805|gb|ADN91075.1| Alanine racemase [Campylobacter jejuni subsp. jejuni M1] gi|315932613|gb|EFV11544.1| alanine racemase [Campylobacter jejuni subsp. jejuni 327] Length = 328 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 135/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ L+ Sbjct: 61 ---------EEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAIDLIRSSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG + V GK Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKVM-- 277 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 278 ------LGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|86153256|ref|ZP_01071460.1| alanine racemase [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613298|ref|YP_001000580.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005511|ref|ZP_02271269.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176] gi|226711034|sp|A1VZN9|ALR_CAMJJ RecName: Full=Alanine racemase gi|85842982|gb|EAQ60193.1| alanine racemase [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249470|gb|EAQ72430.1| alanine racemase [Campylobacter jejuni subsp. jejuni 81-176] Length = 328 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 135/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ L+ Sbjct: 61 ---------EEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAIDLIRSSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKKVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG + V GK Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKVM-- 277 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 278 ------LGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|20137235|sp|Q9F9L1|ALR_PISSA RecName: Full=Alanine racemase gi|10441347|gb|AAG17001.1|AF184152_4 alanine racemase [Piscirickettsia salmonis] Length = 166 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Query: 198 SSSGILLGPNYHFQLTRPGISLYGGTDKINK---SHPMQTVVTAEARIILIRKALAGELV 254 +S+ I + RPGI LYG + +K +Q V+ +R+I +++ GE V Sbjct: 1 NSAAIFNFSYERYDWVRPGIMLYGISPFADKNGVDLELQPVMHVVSRLISVKQLRQGESV 60 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT 314 YG + D + + ++GY DGYP G ++G ++G+++ Sbjct: 61 GYGATWQCPEDMQVGILSLGYGDGYPRLA-----------ASGTPFLVRGQRCALIGRVS 109 Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 MDM D+ VG+ + ++G D+ ++++A GT Y+L+ + R Sbjct: 110 MDMIAIDLRRCPDAGVGEAVTVWGQDLPVEEIARHVGTIAYELVCNMPLRAP 161 >gi|325846728|ref|ZP_08169643.1| putative alanine racemase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481486|gb|EGC84527.1| putative alanine racemase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 177 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 19/179 (10%) Query: 195 SLASSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQTVVTAEARIILIRKALA 250 S++ + N+ L R GI +YG + +A+I I+ Sbjct: 1 MHISNTAASMEYNFKSDLLRLGIGIYGIYPSDYIREISKIKLCQAFEFKAQISFIKDVRK 60 Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310 G +SYG +D +A ++GYADG+ + S G+ + G + ++ Sbjct: 61 GTSISYGRTYIAPKDIKVATVSVGYADGFKRSFSNT-----------GEVLVNGKIAKVV 109 Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 G++ MD M D++ ++GDYI ++ PDI + A T Y+L+ I R + Y Sbjct: 110 GRVCMDQIMVDVSGI-DCKIGDYITLY-PDIYKE--ANKIHTIAYELMTSISNRVPRIY 164 >gi|294853873|ref|ZP_06794545.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] gi|294819528|gb|EFG36528.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] Length = 309 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 103/186 (55%), Gaps = 2/186 (1%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL AL++N+ ++ RTAAVVK +AYGLG ++APA Y AG +DFFV + E Sbjct: 21 LTIDLAALRHNYSAIATRIAPTRTAAVVKADAYGLGASRVAPAFYEAGCRDFFVAHLGEA 80 Query: 69 VKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 V L+ + P A ++VL G+ PG E ++PV++S+ Q+ ++ L G P L Sbjct: 81 VALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAALATRLGKKLPALL 140 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 Q DTG +RLGLS +E N + ISHLA D+P + N+ QL + L+ Sbjct: 141 QFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAANARQLAKMTALL 200 Query: 187 SHYKGI 192 + + Sbjct: 201 ARLPKL 206 >gi|315929851|gb|EFV09014.1| alanine racemase [Campylobacter jejuni subsp. jejuni 305] Length = 328 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 136/365 (37%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ + L+ Sbjct: 61 ---------EEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAINLIQGSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG + V GK Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----YNGKGELVLGNGKVM-- 277 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 278 ------LGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|289422485|ref|ZP_06424328.1| alanine racemase 2 [Peptostreptococcus anaerobius 653-L] gi|289157057|gb|EFD05679.1| alanine racemase 2 [Peptostreptococcus anaerobius 653-L] Length = 372 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 130/347 (37%), Gaps = 26/347 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL IDL AL N + ++G AVVK++AY G E+ Y AGV+ F TS+ Sbjct: 12 PRLTIDLDALHKNARHLIGMTGGG-LIAVVKNDAYHFGLERAVETFYQAGVRFFATTSLR 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 + +++R IF+L + D ++ ++S+ F + Y L Sbjct: 71 DSIRIRDLYDDVDIFMLNPC--RDFDSLRDYSITATLASL---DFLRENKDSMHDISYHL 125 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ----LERF 182 + R G ++ + T + +L I +H + AD+ + + Sbjct: 126 EWAGQMRRSGCRSKKEVLETIRLAKESNIKLDGIWTHFSWADEFDQENSYEKEKSDWLDI 185 Query: 183 RTLISHYKGIEASLASSSGILLGPNY--HFQLTRPGISLYGGTDKINKSH-PMQTVVTAE 239 + A +S L + R GISLYG +T Sbjct: 186 LESAQKIHKFKVVQAQNSASLQRDGLLDNHSHARVGISLYGCPPYKGADLTNNHHALTLS 245 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 II I+ GE + Y K + S + V IGY DG +G Sbjct: 246 GSIISIKDLEIGESIGYCSSFKADKKSRVGVINIGYGDGLLRK-----------RVMGHD 294 Query: 300 GFIKGYMVPILGKITMDMTMFDI-TDSLSIEVGDYIQIFGPDIKLDD 345 I G P++ + M T+ + D S++VGD +G DI + + Sbjct: 295 VLINGRRYPLV-SMMMSHTIVLLNEDDNSVKVGDQAIFYGQDIPVYE 340 >gi|148926587|ref|ZP_01810269.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356390|ref|ZP_03223155.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8421] gi|145845281|gb|EDK22375.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8486] gi|205345775|gb|EDZ32413.1| alanine racemase [Campylobacter jejuni subsp. jejuni CG8421] Length = 328 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 135/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ + L+ Sbjct: 61 ---------EEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAINLIQGSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG G Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----------YNGKGELVLGN 273 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G +LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 274 GKT--MLGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|153951186|ref|YP_001398023.1| alanine racemase [Campylobacter jejuni subsp. doylei 269.97] gi|226711033|sp|A7H3E3|ALR_CAMJD RecName: Full=Alanine racemase gi|152938632|gb|ABS43373.1| alanine racemase [Campylobacter jejuni subsp. doylei 269.97] Length = 328 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 135/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ + L+ Sbjct: 61 ---------EEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----R 183 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F + Sbjct: 112 IDTGMHRNGICVENLEHAIDLIRSSNL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ +++ A + Sbjct: 170 MVKKYFSNLLFHSHNSAALFRGKIPEDEYCRIGLVQFGYGDS-----NLKRILSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG G Sbjct: 225 SQRILQKGQSIGYGGIFTAVKDMEVATYDLGYADGLFR-----------YNGKGELVLGN 273 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G +LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 274 GKA--MLGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|315638691|ref|ZP_07893865.1| alanine racemase [Campylobacter upsaliensis JV21] gi|315481315|gb|EFU71945.1| alanine racemase [Campylobacter upsaliensis JV21] Length = 327 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 121/366 (33%), Gaps = 50/366 (13%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + +D A K+N + +G + V KDNAYG G +AP GV V E Sbjct: 4 ITLDSNAYKHNLSYIATRAGGYDKLICVFKDNAYGHGICLLAPVAKACGVNFVAVKDENE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 L Y +L G E + F + L S + L+ Sbjct: 64 AYLLEKYFDNI--LILSHRPTGNENLNF----------IYALNEPSSFAKFKKNTRIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +DT +R G+ + L +H AD+ + + Q F+ Sbjct: 112 IDTNMHRNGI---DVNGLEKFLKELCHLNLEGAFTHFMSADELDASYFT-QKYNFQKAKK 167 Query: 188 HYKG-----IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 K + +SS + G ++ R G+ +G ++ V+ A Sbjct: 168 IIKNFTQNTLTFHSFNSSALFRGKMPQDEMCRVGLVQFGYG-----DKGLKKVLRLYAHK 222 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 + R G+ V YGG IA +GYADG + Sbjct: 223 LSSRVLEKGQSVGYGGAYVANEPLQIATYDLGYADGLFRYDGKGQLK-----------LA 271 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIG 362 G +LGK++MD + + G I + + A T NY++LV++ Sbjct: 272 NGK--EMLGKMSMDSFSCE-------DSGGEICVLDD---ANLWADFFHTINYEILVKLN 319 Query: 363 TRYAKF 368 + Sbjct: 320 ANIKRV 325 >gi|255322065|ref|ZP_05363213.1| alanine racemase [Campylobacter showae RM3277] gi|255300878|gb|EET80147.1| alanine racemase [Campylobacter showae RM3277] Length = 333 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 74/370 (20%), Positives = 134/370 (36%), Gaps = 44/370 (11%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++ +A +N + A +G R V+KDNAYG G + + G++ V + Sbjct: 1 MSELVLNRSAYIHNLTKICAKAGGKDRVILVLKDNAYGHGAALVGREAASYGIKFCAVKN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E +L + + + + + G+ + + S + Sbjct: 61 EVEAREL-EPFFEHILILSHIPNGGESERFI-----------YSVNDISLIAKFKKGARV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VDT +R G+S+ E S Q+ +H A++ SS VQ F Sbjct: 109 HIAVDTLMHRNGVSVGEV-RAACESALAHGLQICGAFTHFRSAEELSSDYF-VQRRNFAA 166 Query: 185 LIS-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + G+ +S+ + R GI+ YG + + S ++ V + Sbjct: 167 AKAVVREICGDGLVFHSHNSAATERFGELADEYVRVGIAAYG-YAQFDDSLGLKRVASLW 225 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A + R G+ YG + + D IAV +GY DG + + + Sbjct: 226 AHKVSGRVLKKGQCAGYGAKFCASEDMQIAVYDLGYGDGLLRYTGEGELKTA-------- 277 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 G +LGK++MD GD I +F A GT +YD+L Sbjct: 278 ---GGQR--LLGKMSMDSFC-----CEDA--GDRICVFDD---ARVWADFFGTISYDVLT 322 Query: 360 RIGTRYAKFY 369 ++ ++ + Sbjct: 323 KLSPSISRRF 332 >gi|86150261|ref|ZP_01068488.1| alanine racemase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597602|ref|ZP_01100836.1| alanine racemase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562525|ref|YP_002344304.1| alanine racemase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20137244|sp|Q9PP26|ALR_CAMJE RecName: Full=Alanine racemase gi|85839377|gb|EAQ56639.1| alanine racemase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190194|gb|EAQ94169.1| alanine racemase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360231|emb|CAL35026.1| alanine racemase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926139|gb|ADC28491.1| alanine racemase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927545|gb|EFV06878.1| alanine racemase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 328 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 135/365 (36%), Gaps = 47/365 (12%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +KID A + N + G+ R V KDNAYG G + +AP N GV V S Sbjct: 4 IKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS--- 60 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + + + + L S++ + L+ Sbjct: 61 ---------EEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQDIKIHLK 111 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ ++ + L +L+ + +H A AD+ VQ E F+ Sbjct: 112 IDTGMHRNGICVENLEHAINLIQGSDL-KLTGMFTHFASADEMDGSFF-VQKENFQKAKK 169 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + ++ + +S+ + G + R G+ +G D ++ V++ A + Sbjct: 170 IVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDS-----NLKRVLSLYAHRL 224 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G+ + YGG +D +A +GYADG G Sbjct: 225 SQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFR-----------YNGRGELVLGN 273 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G +LGK++MD + G+ I +F D A T NY++LV++ Sbjct: 274 GKA--MLGKMSMDSFSCE-------NSGEEICVFKD---ADIWADFFHTINYEILVKLNP 321 Query: 364 RYAKF 368 + Sbjct: 322 NIQRV 326 >gi|315918009|ref|ZP_07914249.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563] gi|313691884|gb|EFS28719.1| alanine racemase [Fusobacterium gonidiaformans ATCC 25563] Length = 359 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 64/377 (16%), Positives = 122/377 (32%), Gaps = 49/377 (12%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+++ A+ +N + + V+K NAYG G ++A AGV V EE Sbjct: 7 LEVNREAILHNINVLRKW-KRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEA 65 Query: 69 VKLRL------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 K+ + + +L G + D IS L Sbjct: 66 KKILEDSYFQSLSKECSFQILIFESIGDFS-LLDHFPRMDISINSLEELEKALEYHISPK 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D F R G+ ++ F + L + +C+ + Sbjct: 125 KMQVKIDFSFGRNGIQEKDLPFFIKKVKEENLTFKGIFSHLFSCSYEDGLLCIKKFSSLV 184 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + S++ + + R G+ YG + +Q + +I Sbjct: 185 QEMGKERFDRIHLQNSAASYNYDCDIVTDI-RVGMLTYGLQEPGYFHEELQRAFCLKGKI 243 Query: 243 ILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 IR + ++Y G++ + A IGYADG+ G Sbjct: 244 DSIRCLENMKYLAYEGKEDVGMKSAKWAAKIKIGYADGF------------GKENENGSC 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----------GPDIKLDDVALAS 350 I+ I ++TMD T ++ ++VGD + +F G +I Sbjct: 292 IIQRKEYRIA-EVTMDNTFLEV--DERVKVGDEVLLFYNPTKTKQETGKEI--------- 339 Query: 351 GTTNYDLLVRIGTRYAK 367 ++ L + R + Sbjct: 340 ----HEHLTGLTNRLPR 352 >gi|224373382|ref|YP_002607754.1| alanine racemase [Nautilia profundicola AmH] gi|223589034|gb|ACM92770.1| alanine racemase [Nautilia profundicola AmH] Length = 324 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 133/364 (36%), Gaps = 57/364 (15%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 L +N + ++ ++ N AV+KDNAYG G + L G+ V + +E + Sbjct: 7 HKQNLFDNLNKISKINPN--ILAVIKDNAYGHGIISFSKMLKEWGINKVCVKNNDEAEVI 64 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + +E IIF + + K + L++DTG Sbjct: 65 KSLF--------------EEIIIFFPHTGRSAKNFSYCINSLKQLKKNRHPYIHLKIDTG 110 Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT------- 184 +R G+ + E + +K ++ + +H C+D+ ++ + +Q ERF+ Sbjct: 111 MHRNGILMDELEEALKIIKDK-EFEVRGVFTHFCCSDETANDMF-IQYERFKKIKNRVEV 168 Query: 185 -LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + I ++S L F RPGI+LYGG + + V+ A ++ Sbjct: 169 FCKENEIKIPYFHIANSYALDKLPDTFDYVRPGIALYGGIE------GYKPVMELRADVL 222 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 R G Y D + +GY DG P +G + + + Sbjct: 223 SSRILKKGWGCGYNKIYMSDEDIEVTTIDVGYGDGLPYFKNGCKLKDAEA---------- 272 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 LGKI+MD + + +F + + T YD+LV+I Sbjct: 273 ------LGKISMDSMII-----KGCFE-KEVVVFDD---VKEFVKNFDTITYDILVKISP 317 Query: 364 RYAK 367 R + Sbjct: 318 RIKR 321 >gi|257452771|ref|ZP_05618070.1| alanine racemase [Fusobacterium sp. 3_1_5R] Length = 360 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 50/385 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + F L+++ A+ +N + + V+K NAYG G ++A AGV Sbjct: 1 MVEHSFY-LEVNREAILHNINVLRKW-KRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQV 58 Query: 61 FVTSVEEGVKLRL------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK 114 V EE K+ + + +L G ++ D + + + + + Sbjct: 59 AVARYEEAKKILEDSYFQSLSKECSFQILIFESIGDFSLLDDFPRMDISINSLEELEKA- 117 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 L +++D F R G+ ++ F + L + + + + Sbjct: 118 LEYHISPKKMQVKIDFSFGRNGIQEKDLPFFIKKVKEENLTFKGIFSHLFSSSYEDGLLC 177 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + S++ + + R G+ YG + +Q Sbjct: 178 IKKFSSLVQEMGKERFDRIHLQNSAASYNYDCDIVTDI-RVGMLTYGLQEPGYFHEELQR 236 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRD--SLIAVAAIGYADGYPLTLSGLDSEHSP 292 + +I IR + ++Y G++ + A IGYADG+ Sbjct: 237 AFCLKGKIDSIRCVENMKYLAYEGKEDVGMKFAKWAAKIKIGYADGF------------G 284 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----------GPDIK 342 G I+ I ++TMD T ++ ++VGD + +F G +I Sbjct: 285 KENENGSCIIQRKEYRIA-EVTMDNTFLEV--DERVKVGDEVLLFYNPTKTKQETGKEI- 340 Query: 343 LDDVALASGTTNYDLLVRIGTRYAK 367 ++ L + R + Sbjct: 341 ------------HEHLTGLTNRLPR 353 >gi|149194319|ref|ZP_01871416.1| alanine racemase [Caminibacter mediatlanticus TB-2] gi|149135494|gb|EDM23973.1| alanine racemase [Caminibacter mediatlanticus TB-2] Length = 331 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 136/371 (36%), Gaps = 64/371 (17%) Query: 9 LKIDLT--ALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 I L L N +++++ N AV+KDNAYG G I+ L G++ V +++ Sbjct: 2 ATIYLNKTNLFYNLQKISSINPN--IIAVIKDNAYGHGIISISKLLKEYGIKKVCVRNID 59 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E +R I + + I ++ LT L Sbjct: 60 EANLVR--GFFEEILIFNSPT--------NRGAINFSYTINSLTQLK----KNRHPYIHL 105 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 ++DTGF R G+ E + K +L + SH CAD+ +Q ++F Sbjct: 106 KIDTGFRRNGILENELDEALDLIKKK-EFELRGVFSHFCCADEFGCD-TFIQYDKFLKIK 163 Query: 183 ----RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + I ++S L + RPGI++YGG D + V++ Sbjct: 164 EKIVKFCKESKLKIPYFHIANSAALNKLPHTLDYVRPGIAIYGGID------GYKPVMSL 217 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 EA ++ +R E Y I+ +GYADG P +G + + + Sbjct: 218 EADVVSVRVLDEKEGCGYNKTFMSDDKIKISTVDVGYADGIPYFRNGCKLKDTIA----- 272 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKLDDVALASGTTNYD 356 LGKI+MD + G+ + IF + + T YD Sbjct: 273 -----------LGKISMDYMIVK---------GEFKKVIIFDD---VKEFVKNFDTITYD 309 Query: 357 LLVRIGTRYAK 367 +LV++ R + Sbjct: 310 ILVKMSPRIKR 320 >gi|241767429|ref|ZP_04765128.1| alanine racemase [Acidovorax delafieldii 2AN] gi|241361801|gb|EER58070.1| alanine racemase [Acidovorax delafieldii 2AN] Length = 270 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 104/266 (39%), Gaps = 14/266 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I +AL +N + +A+T AVVK NAYG G E++ L F + Sbjct: 11 RPIHATIHASALHHNLERVRQAVPDAKTWAVVKANAYGHGIERVFEGLRA--ADGFALLD 68 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++E ++R + I +L G+ P ++ L + Q+ + + V H Sbjct: 69 LDEAERVRHLGWRGPILLLEGVFEPRDLELCSRLGLWHAVHCDEQIDMLAAHKTQ-VPHR 127 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L++++G NRLG + Q ++H + AD P + Q++ F Sbjct: 128 VFLKLNSGMNRLGFTPQRYRSAWARLNALPQVDEISFMTHFSDADGPRGI--AHQVQTFN 185 Query: 184 TLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINKSHPMQTV----V 236 G E S+ +S+ L R GI LYG + Q + Sbjct: 186 AATQDLPG-ERSICNSAATLRHAGDAQVRGDWVRAGIVLYGSAPDHPEHTAAQWDLQPSM 244 Query: 237 TAEARIILIRKALAGELVSYGGQKKL 262 T RII ++ AG+ V YG + Sbjct: 245 TLATRIIGTQQLQAGDTVGYGSRFTA 270 >gi|254507449|ref|ZP_05119584.1| alanine racemase 1 [Vibrio parahaemolyticus 16] gi|219549705|gb|EED26695.1| alanine racemase 1 [Vibrio parahaemolyticus 16] Length = 113 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 11/123 (8%) Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 AGE V YGG+ RD+ + V AIGY DGYP T G + G V Sbjct: 1 MKAGESVGYGGKWTSERDTKVGVIAIGYGDGYPRTAPN-----------GTPVRVNGREV 49 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 PI G+++MDM D+ + VGD ++G D+ + VA GT Y+L+ ++ +R Sbjct: 50 PIAGRVSMDMLTVDLGPEATDHVGDEAILWGKDLPAEQVAAHIGTIAYELVTKLTSRVEM 109 Query: 368 FYT 370 Y+ Sbjct: 110 EYS 112 >gi|157164787|ref|YP_001466519.1| alanine racemase [Campylobacter concisus 13826] gi|226711030|sp|A7ZCL1|ALR_CAMC1 RecName: Full=Alanine racemase gi|112800684|gb|EAT98028.1| alanine racemase [Campylobacter concisus 13826] Length = 337 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 141/373 (37%), Gaps = 52/373 (13%) Query: 10 KIDLT--ALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +I L A +N + +G V+KDNAYG G IA G+++ V S Sbjct: 3 EIHLNKAAYIHNLTKICDKAGGKENVIVVLKDNAYGHGARLIASEAKKFGIKNCAVKSEC 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++ I +L + G E F + L+ + L Sbjct: 63 EANEI--ADIFENILILSHVPTGDESAKFTY----------AINDIDALLKIKENTKINL 110 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +DTG +R GL + E ++ +L +H +D+ ++ VQ E F Sbjct: 111 AIDTGMHRNGLDISELDY-AFEILARRNLELLGAYTHFRASDELNADYF-VQRENFSAAK 168 Query: 187 SHYKGIE---------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT 237 + + +S+ + ++ R GI+ YG + N S ++ V++ Sbjct: 169 AKILALCDEFGIKKPIFHSHNSAALERASEIKDEMVRVGIAQYG-YAQFNGSLNLKPVLS 227 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A+ + R +G+ V YG + D +A +GY DG LG Sbjct: 228 LWAKRVSRRVLKSGQSVGYGAKFIAKDDINVATYDLGYGDGLLR-----------YNGLG 276 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIFGPDIKLDDVALASGTTNYD 356 G + ILGKI+MD S + G+++ +F + A GT NYD Sbjct: 277 ELRLANGEL--ILGKISMDSF--------SCKDSGEWVCVF---EDANVWAEFFGTINYD 323 Query: 357 LLVRIGTRYAKFY 369 +LV++ + + Sbjct: 324 ILVKLSPNITRKF 336 >gi|213581079|ref|ZP_03362905.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 240 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 11/243 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++V++G NRLG + A + ++SH A AD P +++ Sbjct: 120 IYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHFAQADHPEGIGEAMRRIALA 179 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINK----SHPMQTVVTAE 239 T SL++S+ L P H+ RPGI LYG + ++ V+T Sbjct: 180 TEGLQCA---YSLSNSAATLWHPQAHYDWVRPGIILYGASPSGQWRDIADTGLKPVMTLS 236 Query: 240 ARI 242 + I Sbjct: 237 SEI 239 >gi|256027408|ref|ZP_05441242.1| alanine racemase, biosynthetic [Fusobacterium sp. D11] gi|289765372|ref|ZP_06524750.1| alanine racemase [Fusobacterium sp. D11] gi|289716927|gb|EFD80939.1| alanine racemase [Fusobacterium sp. D11] Length = 226 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++ID LK N + ++ N VVK NAYGLG +I L G+ F V ++ Sbjct: 2 RTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGINFFGVANL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 EE ++L+ + +I +L + + ISS+ Q L++ ++ Sbjct: 62 EEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQ---LQFLVNNKLNPNIH 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP---SSHVNSVQLERF 182 L+ DTG RLG + EA N L L I SHL+ +D + + Q+E+F Sbjct: 119 LKFDTGMTRLGFEVDEAKKIIEFCKNNNL-NLVGIFSHLSDSDGNTVETKNFTLEQIEKF 177 Query: 183 RTLISHYKGIEASLASSS-GILLGPNYHFQLTRPGISLYGGT 223 + +++ +++S+ + L R GI +Y T Sbjct: 178 KKIVNSLNLKYIHISNSAGITNFHNDIVGNLVRMGIGMYSFT 219 >gi|167626729|ref|YP_001677229.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596730|gb|ABZ86728.1| Alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 351 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 74/363 (20%), Positives = 142/363 (39%), Gaps = 23/363 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ++I+ +K+N + + +++ +VK NAYG+G E I N V + + +EE Sbjct: 7 VEINSKLVKSNIEYLRNKNPHSKIMFIVKANAYGVGIENIYKV-TNNLVDAYGIARIEEY 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 L+ I L GI+ N+IP++ + + Y K S L Sbjct: 66 YVLKNLGCTKDIVFLSGIYAECFNFKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDF 124 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D G R G + + + + L + + + ++ Sbjct: 125 DCGMGRFGFYRDDFIKHLDTLKSSGFSNIILFSHIPTGYNGYDK---AKKYINKILSLAE 181 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 ++ + ++S L ++ + R ++ G + + ++ ++ +A II IR Sbjct: 182 ETKLKYTFSNSPVSLFDTDFQQEYIRSSSAILGYDQEPKE---IKFSLSLKACIISIRDI 238 Query: 249 LAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP 308 GE +SYG + +++ +A+ IGYADG + IK P Sbjct: 239 PKGEYISYGNEYFCNKNTTVAILNIGYADGL-----------GCEIHHDSYLLIKATKCP 287 Query: 309 ILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RY 365 IL I MD DI+ +++ D I++F P+ + L+ A T + L ++ R Sbjct: 288 IL-SINMDYLYVDISAIKQQLKMLDMIELFSPNSLSLEQHASMYNITKDEALTKLNALRV 346 Query: 366 AKF 368 K Sbjct: 347 RKI 349 >gi|317059312|ref|ZP_07923797.1| alanine racemase [Fusobacterium sp. 3_1_5R] gi|313684988|gb|EFS21823.1| alanine racemase [Fusobacterium sp. 3_1_5R] Length = 359 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 61/377 (16%), Positives = 125/377 (33%), Gaps = 49/377 (12%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+++ A+ +N + + V+K NAYG G ++A AGV V EE Sbjct: 7 LEVNREAILHNINVLRKW-KRKDIIPVIKANAYGHGMLEMAKTCVQAGVTQVAVARYEEA 65 Query: 69 VKLRL------YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 K+ + + +L G ++ D + + + + + L Sbjct: 66 KKILEDSYFQSLSKECSFQILIFESIGDFSLLDDFPRMDISINSLEELEKA-LEYHISPK 124 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +++D F R G+ ++ F + L + + + + Sbjct: 125 KMQVKIDFSFGRNGIQEKDLPFFIKKVKEENLTFKGIFSHLFSSSYEDGLLCIKKFSSLV 184 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + S++ + + R G+ YG + +Q + +I Sbjct: 185 QEMGKERFDRIHLQNSAASYNYDCDIVTDI-RVGMLTYGLQEPGYFHEELQRAFCLKGKI 243 Query: 243 ILIRKALAGELVSYGGQKKLTRD--SLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 IR + ++Y G++ + A IGYADG+ G Sbjct: 244 DSIRCVENMKYLAYEGKEDVGMKFAKWAAKIKIGYADGF------------GKENENGSC 291 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF----------GPDIKLDDVALAS 350 I+ I ++TMD T ++ ++VGD + +F G +I Sbjct: 292 IIQRKEYRIA-EVTMDNTFLEV--DERVKVGDEVLLFYNPTKTKQETGKEI--------- 339 Query: 351 GTTNYDLLVRIGTRYAK 367 ++ L + R + Sbjct: 340 ----HEHLTGLTNRLPR 352 >gi|307720266|ref|YP_003891406.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294] gi|306978359|gb|ADN08394.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294] Length = 339 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 69/374 (18%), Positives = 135/374 (36%), Gaps = 51/374 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ++ NN + L+ + A V+KDNAYG G +IA G+ V S Sbjct: 1 MAYITLNKNHFFNNLTIIAKLTKAKDKIALVLKDNAYGHGLFEIATLAKEYGITKAVVRS 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EE ++ ++ P + + ++ + Sbjct: 61 NEEAKEIENLF---EYILVLADTPKEASQKIRYT----------INDIRQIQKFAKNTKV 107 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VDTG R G+ + E + + L QL + +H + AD+ + +Q E F+ Sbjct: 108 ELKVDTGMCRNGIMMDELEEAFILCAQQGL-QLEAVFTHHSSADE-DNRYFDLQNENFKR 165 Query: 185 LISH---------YKGIEASLASSSGILLGPNYHFQLTRPGISLYGG--TDKINKSHPMQ 233 + + + +S+ + ++ + R GI+ YG +Q Sbjct: 166 VKQDSQVLAKKYSFIPLRFHSFNSAALFRSNDFDEDMARVGIAAYGCLELPSSLHVKNLQ 225 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 V++ A+ + R+ GE V YG + ++ GY DG+ + S Sbjct: 226 PVLSVYAQRLSSRRLQKGECVGYGAAFETAVTCNVSNYDFGYGDGFLRSCSHHYITPEGI 285 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 I G+I+MD + F +T+ + + D +A + T Sbjct: 286 --------------KIAGRISMDNSSF-LTNKEKLLIFD---------DARVIAKFADTI 321 Query: 354 NYDLLVRIGTRYAK 367 +Y++L + + + Sbjct: 322 SYEILTALKEKIKR 335 >gi|152990104|ref|YP_001355826.1| alanine racemase [Nitratiruptor sp. SB155-2] gi|226711055|sp|A6Q1W0|ALR_NITSB RecName: Full=Alanine racemase gi|151421965|dbj|BAF69469.1| alanine racemase [Nitratiruptor sp. SB155-2] Length = 332 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 148/367 (40%), Gaps = 60/367 (16%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 ALK+N +++ +G + + AAV+KDNAYG G E A + G++ V + EE +K+ Sbjct: 9 KALKHNLETVSKKAGGSDKIAAVLKDNAYGHGIEGFAKKISRLGIKKAVVRTYEEALKIA 68 Query: 73 LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGF 132 + P I H S + L L++DTG Sbjct: 69 DFFPYILILSDTPRHD---------------SFHYAINDLDTLQVLEPGTKVHLKIDTGM 113 Query: 133 NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGI 192 +R G++L+E K L+ + +H AD+ SS + Q E+++T+ H + Sbjct: 114 HRNGIALEEIEK-AFELLQKNRAHLTGVFTHFRSADELSSELF-WQNEQWQTVKQHVIEL 171 Query: 193 --------EASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARI 242 A++S L R GI+LYG T D + + ++ V + A+ Sbjct: 172 IKKYNLQKPLFHAANSAALFRLGCEDDFARIGIALYGYTELDDLYEPPALEPVASLWAQK 231 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I R+ G V YGG + D +I+ GYADG ++ Sbjct: 232 IASRELKKGSRVGYGGVFEAREDMIISTYDAGYADGIFRFQKEIEDG------------- 278 Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKLDDVALASGTTNYDLLVR 360 ILG+++MD + G+ I IF +A GT +Y+LLV+ Sbjct: 279 -----KILGRVSMDSILL---------EGEKKEICIFSD---AKKMARKLGTISYELLVK 321 Query: 361 IGTRYAK 367 + ++ Sbjct: 322 MPAHLSR 328 >gi|218661516|ref|ZP_03517446.1| alanine racemase protein [Rhizobium etli IE4771] Length = 130 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%) Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 M+ VV + ++ R +G + YGG R + +A A GYADG P +L Sbjct: 1 MEPVVRLDVAVVQTRTVPSGAKIGYGGAHVTRRQTRLATIAAGYADGLPRSLGDR----- 55 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALA 349 G + KG +PI+G+++MD T DIT + +G +++ GP+ LDDVA Sbjct: 56 ------GAVYHKGIRLPIVGRVSMDSTTVDITALPEGALSLGSLVEVLGPNQTLDDVAGD 109 Query: 350 SGTTNYDLLVRIGTRYAKFY 369 +GT +Y++L +G RY + Y Sbjct: 110 AGTISYEILTGLGDRYDRQY 129 >gi|223038883|ref|ZP_03609175.1| alanine racemase [Campylobacter rectus RM3267] gi|222879856|gb|EEF14945.1| alanine racemase [Campylobacter rectus RM3267] Length = 334 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 73/370 (19%), Positives = 133/370 (35%), Gaps = 45/370 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L ++ A NN + A +G R V+KDNAYG G + N G++ V + Sbjct: 1 MSELVLNRAAYINNLTKICAKAGGKDRVILVLKDNAYGHGATIVGREAANYGIKFCAVKN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E +L + + + + G+ + + S + Sbjct: 61 ETEAREL-EPFFEHILVLSHIPDGGESERFI-----------YAVNSLSLIAKFKKGARV 108 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VDT +R G+++ EA + Q+ +H A++ SS VQ F T Sbjct: 109 HIAVDTLMHRNGVAVGEA-KAACEAALVHGLQICGAFTHFRSAEELSSDYF-VQRRNFDT 166 Query: 185 ------LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 I + + +S+ + R GI+ YG + ++S ++ V + Sbjct: 167 AKAVVREICGERDLVFHSHNSAATERFGELADECVRVGIAAYG-YAQFDESLELKRVASL 225 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 A + R G+ YG + + D +A+ +GY DG + + + Sbjct: 226 WAHKVSDRVLKKGQCAGYGAKFCASEDMRVAIYDLGYGDGLLRYVGEGELRTAS------ 279 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 G +LGK++MD G+ I +F A GT +YD+L Sbjct: 280 -----GQR--LLGKMSMDSFC-----CEDA--GEKICVFDD---ARVWAKFFGTISYDVL 322 Query: 359 VRIGTRYAKF 368 ++ + Sbjct: 323 TKLSPSINRR 332 >gi|319938192|ref|ZP_08012590.1| alanine racemase [Coprobacillus sp. 29_1] gi|319806713|gb|EFW03362.1| alanine racemase [Coprobacillus sp. 29_1] Length = 260 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 111/240 (46%), Gaps = 3/240 (1%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA-GVQDFFVTSVEEGV 69 I L L++N +++ A++K NAYG G +++A L + + F V +++E + Sbjct: 17 IRLDYLQDNVNTLYQRV-QKPMMAIIKANAYGHGYQEVANVLKDHEHISMFGVATLKEAI 75 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 LR + I VL I + D ++ + S + +L +++D Sbjct: 76 DLRKLGIEQDILVLGAIPLKDLDFVIDYDITLTLFSKEYMEEIVELYHHEKPVKVHIKID 135 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERFRTLISH 188 TG NR+GL + + ++ K + Q+ + +H A ADDP + QL F ++ Sbjct: 136 TGMNRIGLKTKTEFEDVLRNYPKDIFQIDGVFTHFATADDPLQNDAYENQLNMFYDIVGD 195 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 ++ +S+ ++ L R GI++YG +S ++ V++ +R+++I+K Sbjct: 196 HQFRYIHCQNSASMMYHHEEKSNLARIGIAMYGVDPAGEESVHLKQVMSLYSRVVMIKKI 255 >gi|313902556|ref|ZP_07835956.1| alanine racemase [Thermaerobacter subterraneus DSM 13965] gi|313467122|gb|EFR62636.1| alanine racemase [Thermaerobacter subterraneus DSM 13965] Length = 511 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 67/359 (18%), Positives = 117/359 (32%), Gaps = 28/359 (7%) Query: 6 FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+++DL L N ++ L R AVVK + YG+G E A AG + Sbjct: 50 RARIEVDLDVLAANLAAVRRFLRPGTRLLAVVKGDGYGVGAEMAARTFAAAGADALGTAT 109 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC---GVS 121 +E ++LR A I V P L + L S+ G Sbjct: 110 LESALRLRRSGITAPILVFQPPEPPLLDFWLREGLQATVHDAATLHALSQRAVALGVGRP 169 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 L+VD G R GL+ + + + ++ + +HL A P + + Sbjct: 170 LAVHLEVDMGLGRGGLAPGQVAPLVAGAASLPGVRIEGLYTHLPTAARPRLALRLLDRFL 229 Query: 182 FRTLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 +G+ L + L P + R G LYG + + + + Sbjct: 230 RLVRDLEERGLRPPLVHCAESHLLVLAPYAQLDMVRVGNLLYGYAPRAARRAGLAVRPPS 289 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP------------------ 280 + + AG++ + +AV +G ADG Sbjct: 290 RLVVRVWAVHRAGDMTPGYRGGWARPGTPVAVLPVGLADGLRPAREARHWGDRMVILGRR 349 Query: 281 --LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 L + + G + VP+ G+ M+ +FD T + G +++ Sbjct: 350 LLGALGARQVLGASTAPPGPRVRAGHREVPLRGEFMMNHCLFDATGLP-LAPGQEVELL 407 >gi|224438031|ref|ZP_03658970.1| alanine racemase [Helicobacter cinaedi CCUG 18818] gi|313144476|ref|ZP_07806669.1| alanine racemase [Helicobacter cinaedi CCUG 18818] gi|313129507|gb|EFR47124.1| alanine racemase [Helicobacter cinaedi CCUG 18818] Length = 348 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 136/385 (35%), Gaps = 63/385 (16%) Query: 6 FLRLKIDLTALKNNWHSMNAL-----SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + +D A K+N + +++ N AAV+KDNAYG G +++A G++ Sbjct: 1 MAEIILDSKAYKHNLNLIHSHINSHNKSNVEIAAVLKDNAYGHGLKEMATIAAEYGIKSV 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FV + E +++ + PQ F YG+ G + + + Sbjct: 61 FVKNYNEAIQIYKFFPQVTAF--YGMPQGDFAKNIAFVIHDEKH----------ISALPQ 108 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 L+V+ G NR G+ E F KKL +L + SH DD S Q Sbjct: 109 GTKVELKVNVGMNRNGIEPSELESFIQAILQKKL-ELIGVFSHNGYGDDLDSVFFHTQ-S 166 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNY------------HFQLTRPGISLYGGTD---K 225 F L + + + L R GI YG D + Sbjct: 167 NFAKLKQEVLHLSQKYGFAPPRFHSLSTSGAIRVASEGGITDDLVRIGIGAYGYLDVSFE 226 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 S +Q V + A + R GE + Y G L +++ IGY DG+ Sbjct: 227 NPISDKLQKVASLYADRVSTRFLDKGERIGYSGCTTLNSPQVVSTYDIGYGDGFFR---- 282 Query: 286 LDSEHSPSVFLGGKGFI-KGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPDIK 342 V K +I G + IL + +MD D I +F Sbjct: 283 --------VNENHKVYIANG--LQILPRSSMDCFSCFCDEP---------RICVFND--- 320 Query: 343 LDDVALASGTTNYDLLVRIGTRYAK 367 + +A A GT +Y++L + + Sbjct: 321 VTHLAKAFGTISYEILTHLSPSIKR 345 >gi|109290351|gb|ABG29384.1| alanine racemase [Mitsuokella multacida] Length = 150 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 2/129 (1%) Query: 5 EFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +IDL AL++N+ + + G A+ AVVK +AYG G +A AG V Sbjct: 22 RAAWAEIDLRALRHNYEEIKKNIRGGAKLCAVVKADAYGHGALAVARVAVEAGASYLAVA 81 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++ E ++LR I +L + P + + I D ++ V+ +P S+ Sbjct: 82 TLGEAIELREAGFTTPILLLGLVLPDEARDIVDYDVTQVVCELPLAEAISREAVRQHKVA 141 Query: 123 PYALQVDTG 131 L+V+TG Sbjct: 142 KVHLKVETG 150 >gi|58039648|ref|YP_191612.1| alanine racemase, C-terminus [Gluconobacter oxydans 621H] gi|58002062|gb|AAW60956.1| Alanine racemase, C-terminus [Gluconobacter oxydans 621H] Length = 166 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 13/148 (8%) Query: 224 DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + VV +A ++ IR+ L GE V YG + R IA A+GYADG+ Sbjct: 19 PITKSAEEPSPVVRLQAHVLQIREILPGEGVGYGLTYRPERVRRIATVAVGYADGFSRHG 78 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG-DY-IQIFGPDI 341 +G G + + +PILG+++MD + DI+D ++G D + + GP Sbjct: 79 AGQ-----------GCAWFEDIRLPILGRVSMDSLIVDISDVPEGKLGPDMMVDLIGPRR 127 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 +DDVA A+GT Y++L +G R+ + Y Sbjct: 128 SVDDVAEAAGTIGYEVLTSLGHRFHREY 155 >gi|260890257|ref|ZP_05901520.1| alanine racemase [Leptotrichia hofstadii F0254] gi|260859877|gb|EEX74377.1| alanine racemase [Leptotrichia hofstadii F0254] Length = 300 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 124/305 (40%), Gaps = 33/305 (10%) Query: 81 FVLYGIHPGQEKIIFDTNLIPVISSVPQ---LTFYSKLMSCGVSHPYALQVDTGFNRLGL 137 L I P K + + N+ I + Q ++V++G NRLG Sbjct: 1 MALNYIEPKNLKYVIENNVEFTIFNFSQLSDYLKILDKSFENRVLKIHIKVNSGMNRLGF 60 Query: 138 SLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSSHVNSVQLERFRTLIS----HY 189 + E L+ ++ + + ++ +D + Q+E++ ++ + Sbjct: 61 NENEILELIEKIKKHEINSKNNKLEIISIFSHISDAENQIETEKQVEKYENILKIFDKNN 120 Query: 190 KGIEASLASSSGIL--LGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + +S +L G Y++ R G++LYG ++ + V+T +++II IR Sbjct: 121 VKYQYKHLQASPLLFKYGQKYNYDFARVGMALYGMEP-LSYDVGLLDVITVKSQIINIRN 179 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMV 307 + +SYG + + RDS I + +IGYA G+ + + I Sbjct: 180 VKKNDKISYGSKGIVNRDSKIGIVSIGYAHGFQKQIENSEE---------AYVLINEKKA 230 Query: 308 PILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----------IKLDDVALASGTTNYDL 357 I+G+I MDM D+TD ++EV D + I G I L VA +GT D+ Sbjct: 231 KIVGEICMDMIFIDLTDIENVEVNDEVVIIGSQKNVENEITEKITLRQVAKWAGTIQDDV 290 Query: 358 LVRIG 362 L + Sbjct: 291 LTKFS 295 >gi|268679013|ref|YP_003303444.1| alanine racemase [Sulfurospirillum deleyianum DSM 6946] gi|268617044|gb|ACZ11409.1| alanine racemase [Sulfurospirillum deleyianum DSM 6946] Length = 342 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 74/373 (19%), Positives = 135/373 (36%), Gaps = 49/373 (13%) Query: 9 LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + ++ L +N ++ +G R AV+KDNAYG G ++A G++ V +VEE Sbjct: 4 ITLNKANLFHNLALLSTKAGGKERVMAVLKDNAYGHGLREMAQLCCEFGIKKAAVKNVEE 63 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 + + I V +++ + + + L L Sbjct: 64 AGVIADLFEEVLILV--------DQVPLEPLAPNLSFAAHSCEMLEALREGS---SIHLS 112 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT--- 184 +DTG +R G+ E K+L + +H AD+ S+ Q F Sbjct: 113 IDTGMHRNGIKEHEIDRAMALILKKRL-VFKGVFTHFRSADELSTAFF-WQRSLFERAKQ 170 Query: 185 -----LISHYKGIEASLASSSGILLGPNYHFQ--LTRPGISLYGGT--DKINKSHPMQTV 235 +++H+ A + +S LL N R GI++YG K++ ++ V Sbjct: 171 RIKAFVLAHHLPEVAFHSCNSAGLLRTNSLGDDAYARVGIAMYGYNTLHPSFKAYELKPV 230 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + A + R GE V YGG + D LI+ IGY DG+ + Sbjct: 231 LALWAEKLSTRILKRGERVGYGGVYEAPCDELISTYDIGYGDGFFRFDGIASLAMADGRL 290 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G+++MD + D+ + +F + +A T Y Sbjct: 291 SK-------------GRMSMDSFCLE-GDAP------KVCMF-ENATA--LAERFQTICY 327 Query: 356 DLLVRIGTRYAKF 368 ++ ++ + Sbjct: 328 EIPTKLSPSLKRI 340 >gi|257458910|ref|ZP_05624031.1| alanine racemase [Campylobacter gracilis RM3268] gi|257443707|gb|EEV18829.1| alanine racemase [Campylobacter gracilis RM3268] Length = 337 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 72/374 (19%), Positives = 125/374 (33%), Gaps = 48/374 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVT 63 + +D A +N + A G A R V KDN+YG GC G V+ VT Sbjct: 1 MSEIILDRAAYAHNLAQIAAKVGGAERVFLVAKDNSYGHGCRLCCEEAAKLGFVR--AVT 58 Query: 64 SVE-EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 E ++ + VL I G E F + S Sbjct: 59 RSATEAAQIADLFDEI--LVLSHIPGGDEDERFCY----------AVNDLSYFARLKRGL 106 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ---- 178 + DT +R G++ E + A + Q Sbjct: 107 KIYIAADTAMHRNGIAASELDEALRLCKQGGFKLCGFFTHFRASDELSGDFFAQRQNFIE 166 Query: 179 ---LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 L R + + + ++ ++S+ I + + R G++ +G + ++S ++ V Sbjct: 167 FKRLARQKAAAAGFGNLKFHSSNSAAIERSAGFEDEYVRVGMAQFG-YPQFDESLNLRPV 225 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + A +I R GE V YG + + D I +GYADG Sbjct: 226 LKLYADLISSRVLKKGERVGYGAKFEAPHDMRIGTYDLGYADGLFR-----------YDG 274 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNY 355 G G +LGK++MD + G+ + + A GT Y Sbjct: 275 EGELALASGQK--MLGKMSMDSFCAEFG-------GEQVCVLDD---ARAWAKHFGTIEY 322 Query: 356 DLLVRIGTRYAKFY 369 ++LV++ + + + Sbjct: 323 EILVKLNSNIPRRF 336 >gi|213026955|ref|ZP_03341402.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 174 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 13/187 (6%) Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 P +N Q + + SLA+S G+ L P + L RPG++L+G + S Sbjct: 1 PDHALNVYQHTLLQQAKKAFPTSRYSLANSCGMFLHPAWREDLCRPGVALFGVA-QPWFS 59 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 P++ T I+ ++ G + YG TR IA + GYADG P L Sbjct: 60 TPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRNL------ 113 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALA 349 +G +P+LG++ MD M D + + GD ++ G L++VA A Sbjct: 114 -----RPPAGVCWRGVRLPVLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAA 167 Query: 350 SGTTNYD 356 T Y+ Sbjct: 168 CDTIPYE 174 >gi|302543291|ref|ZP_07295633.1| alanine racemase [Streptomyces hygroscopicus ATCC 53653] gi|302460909|gb|EFL24002.1| alanine racemase [Streptomyces himastatinicus ATCC 53653] Length = 252 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 4/191 (2%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + R +DLTAL++N ++ A + A AVVK + YG G A A AG Sbjct: 6 ETPMRARAVVDLTALRDNVRALRAAAPTAELMAVVKSDGYGHGAIPCARAARAAGAGWLG 65 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGV 120 + EE + LR Q R+ G + + ++ S V + +CG Sbjct: 66 TATPEEALALRAAGDQGRLMCWLWTPGGPWRQAIEADIDVSASGVWALREAVAAARACGR 125 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI---ISHLACADDPSSHVNSV 177 + L+ DTG R G + + + + + SH ACAD+P + Sbjct: 126 TARVQLKADTGLGRNGCPPADWPELVAEALAAEAEGTVKVTGLWSHFACADEPGHPSIAA 185 Query: 178 QLERFRTLISH 188 QL FR L+ Sbjct: 186 QLTVFRELLDQ 196 >gi|313683296|ref|YP_004061034.1| alanine racemase [Sulfuricurvum kujiense DSM 16994] gi|313156156|gb|ADR34834.1| alanine racemase [Sulfuricurvum kujiense DSM 16994] Length = 338 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 76/371 (20%), Positives = 128/371 (34%), Gaps = 52/371 (14%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTSVE- 66 +K+ AL +N + G AVV KDNAYG G IA GV+ V +E Sbjct: 4 IKLSRKALIHNLDIIAHQVGGKDKIAVVLKDNAYGHGAVLIAQTASEYGVKQ-AVVRLER 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++ Y I + ++ L Sbjct: 63 EAEEIVRYFDNVLILGQKPTQ-------------VHPHFSYAINSLEEIAQYPSGARVEL 109 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL- 185 ++DTG +R G+ ++ + ++ ++SH AD SS Q + F Sbjct: 110 KIDTGMHRNGVFPEQLEE-AFEKIAQRGLICVGLMSHFRAADTLSSEWF-WQRKIFDATK 167 Query: 186 -------ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVV 236 + + +++S+G + R GI+LYG + + +Q+V+ Sbjct: 168 IRASALAKKYGWSLRFHISNSAGAFRSAECSDDMVRVGIALYGCLEMDKTLEQPELQSVL 227 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + I R AGE V Y G + D +I+ +GYA+G S Sbjct: 228 SLWGDKIATRVLKAGERVGYNGIYEAQSDEVISTYDLGYANGLDRLASNRYVTPEGIELR 287 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G+I+MD F D+ + + D +D A GT Y+ Sbjct: 288 --------------GRISMDSASF-AGDAEQLMIFD---------NANDYARIVGTIGYE 323 Query: 357 LLVRIGTRYAK 367 +L + + Sbjct: 324 ILACLDKDLKR 334 >gi|325526091|gb|EGD03753.1| alanine racemase [Burkholderia sp. TJI49] Length = 117 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 11/105 (10%) Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 R I V A GYADGYP G + G M ++G+++MDM D Sbjct: 2 ADRPMRIGVVACGYADGYPRHA-----------PTGTPIAVDGVMTRVVGRVSMDMLTVD 50 Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 +T + +G ++++G +K+DDVA ASGT Y+L+ + R Sbjct: 51 LTPCPNAGIGSSVELWGDQVKVDDVAEASGTIGYELMCALARRVP 95 >gi|325273197|ref|ZP_08139484.1| alanine racemase [Pseudomonas sp. TJI-51] gi|324101674|gb|EGB99233.1| alanine racemase [Pseudomonas sp. TJI-51] Length = 113 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R IDL AL++N+ L+G A+ AV+K +AYG G + A AL F V Sbjct: 2 RPARALIDLQALRHNYRLARELTG-AKALAVIKADAYGHGAVRCALALEAE-ADGFAVAC 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPG-QEKIIFDTNLIPVISSVPQLTFYS 113 +EE ++LR +A + +L G + +I + +L V+ S+ QL Sbjct: 60 IEEALELRGAGIKAPVLLLEGFFEASELALIAEHDLWCVVHSLWQLEAIE 109 >gi|168210753|ref|ZP_02636378.1| alanine racemase family protein [Clostridium perfringens B str. ATCC 3626] gi|170711187|gb|EDT23369.1| alanine racemase family protein [Clostridium perfringens B str. ATCC 3626] Length = 350 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 120/328 (36%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K +AYGLG ++IA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + L I +L + + NLI + + + Sbjct: 61 NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A D + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERIKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + YK + + + + + G I + ++ Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|18310043|ref|NP_561977.1| alanine racemase [Clostridium perfringens str. 13] gi|18144722|dbj|BAB80767.1| probable alanine racemase [Clostridium perfringens str. 13] Length = 350 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 120/328 (36%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K +AYGLG ++IA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + L I +L + + NLI + + + Sbjct: 61 NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A D + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + YK + + + + + G I + ++ Sbjct: 173 KSTVEKYKDKVRIIHCMASSAVVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|110799046|ref|YP_695763.1| alanine racemase family protein [Clostridium perfringens ATCC 13124] gi|182626219|ref|ZP_02953977.1| alanine racemase family protein [Clostridium perfringens D str. JGS1721] gi|110673693|gb|ABG82680.1| alanine racemase family protein [Clostridium perfringens ATCC 13124] gi|177908483|gb|EDT71016.1| alanine racemase family protein [Clostridium perfringens D str. JGS1721] Length = 350 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K +AYGLG +KIA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + L I +L + + NLI + + + Sbjct: 61 NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A D + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERIKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + YK + + + + + G I + ++ Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|168217469|ref|ZP_02643094.1| alanine racemase family protein [Clostridium perfringens NCTC 8239] gi|182380489|gb|EDT77968.1| alanine racemase family protein [Clostridium perfringens NCTC 8239] Length = 350 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K +AYGLG +KIA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + L I +L + + NLI + + + Sbjct: 61 NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A D + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + YK + + + + + G I + ++ Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLKKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|10802761|gb|AAG23602.1|AF244653_1 alanine racemase [Carboxydothermus hydrogenoformans] Length = 232 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 20/234 (8%) Query: 110 TFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169 + +L + Y L++DTG R+G +E K + + +H A AD+ Sbjct: 11 AYQERLERLKKTLFYHLKIDTGMGRIGFWYEELEK-IEEVLKLKNLEAEGVYTHFARADE 69 Query: 170 PSSHVNSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 + +Q+ERF ++ H K A+S+ I+ P H+ L RPGI LYG Sbjct: 70 QDLSFSKLQIERFNIVLKHLKAKGIEVKYRHAANSAAIMRLPEAHYDLVRPGIMLYGEYP 129 Query: 225 KINKS---HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 + ++ +T +AR+ ++K AG VSYG ++ +LI +GYADGY Sbjct: 130 SRDVPRELAHLKPALTLKARVSQVKKVPAGFTVSYGSTYVTSKATLIVSLPLGYADGYFR 189 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQ 335 LS G I G I G++ MD M ++ + GD Sbjct: 190 RLSNR-----------GVVLINGKRWSITGRVCMDQLMVRWDETERVLPGDEAV 232 >gi|237753177|ref|ZP_04583657.1| alanine racemase [Helicobacter winghamensis ATCC BAA-430] gi|229375444|gb|EEO25535.1| alanine racemase [Helicobacter winghamensis ATCC BAA-430] Length = 360 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 64/386 (16%), Positives = 120/386 (31%), Gaps = 53/386 (13%) Query: 6 FLRLKIDLTALKNNWHSM-NALSGNAR------TAAVVKDNAYGLGCEKIAPALYNAGVQ 58 L+I +N + A++ + A V+KDNAYG G +IA G++ Sbjct: 1 MPYLEISKKNFFHNHQMIAQAITPKEKKGIKGEIAIVLKDNAYGHGIMEIASLAKEVGIK 60 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 FV +++E + ++ + I + + + Sbjct: 61 TAFVKNLQEALSIKTFFDNIAILYPNSLPNKNALESALKIPSISFCTPSLESLQEYPSKT 120 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + VD+G +R G+ + D + L + + D + VQ Sbjct: 121 NIELK----VDSGMHRNGIDKTKLRDAFELITTRNLNLKGVFTHNGYGDD--LNSAFYVQ 174 Query: 179 LERFRTLISHYKGIEASLASSSGILLG-----------------PNYHFQLTRPGISLYG 221 F + + L R GI+ YG Sbjct: 175 DMEFLEIKKEALKLCEHFKIPRPKFHSLSSSGALRASNFNASLPKELQDDLFRIGIAFYG 234 Query: 222 GTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL 281 + ++ + + A I K G + Y G L D +++ IGY DG Sbjct: 235 YNCSSPNTLKLKPIASLFANKISTLKLKKGTSIGYSGVSMLETDGIVSTYDIGYGDGLFR 294 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI 341 G++ + IL + +MD + +D+ S + IF Sbjct: 295 VREGMELYTTEG-------------YRILPRASMDCISIE-SDTSS------VCIFND-- 332 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367 + A + T Y++LV + + Sbjct: 333 -VSAFAKSFNTIPYEILVHLHAYIPR 357 >gi|148557035|ref|YP_001264617.1| alanine racemase domain-containing protein [Sphingomonas wittichii RW1] gi|148502225|gb|ABQ70479.1| alanine racemase domain protein [Sphingomonas wittichii RW1] Length = 384 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 73/350 (20%), Positives = 126/350 (36%), Gaps = 26/350 (7%) Query: 12 DLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 D A N + L + K + YG+G E+I AGV F + + EE ++ Sbjct: 26 DERAFHANVEQVRRLLPPGTKIYQCAKGDGYGVGVERIVCLGVRAGVDGFCLGTPEEALR 85 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 + + + G P + + +I ISSV L+ G + ++D Sbjct: 86 AKCVAAGRPVLLFAGCDPAALGEMVEAGIIVSISSV---EGCEALLRSGATGDVFFKLDC 142 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH-- 188 GF R GL+ + + + SH D +R LI Sbjct: 143 GFRRYGLNEPDLRTVLARVRRQSSVRCIGAYSHFGSRADEIVDGGLPLFDRLTRLIEDAV 202 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKA 248 + IE +ASS+ IL P PG LYG + P Q +V + +L Sbjct: 203 QRPIETMVASSTLILQRPGLGHSAVDPGRLLYGMMAAGPEMPPFQPIVPRISSRLLQVTP 262 Query: 249 LAGE---LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 V Y + + V +G+ DG + G+ I+G Sbjct: 263 FDEARLLTVGYADKTAIPAGGATGVFPLGWIDGLS------------AHRGFGEVLIRGT 310 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASG 351 + ++ + T+ ++ +++ + VGD + + G I L+ +A A G Sbjct: 311 RLSVVAR-TLQHSIVNLSGLSDVRVGDEVVLVGAQGDEQIGLEAMASAQG 359 >gi|319955971|ref|YP_004167234.1| alanine racemase [Nitratifractor salsuginis DSM 16511] gi|319418375|gb|ADV45485.1| alanine racemase [Nitratifractor salsuginis DSM 16511] Length = 335 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 134/371 (36%), Gaps = 47/371 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVV-KDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ID +N + + +G+ AVV KDNAYG G + + G+++ V + Sbjct: 1 MAYILIDRGNFYHNLNQLALKAGSKDRLAVVLKDNAYGHGLRLMGELSRDYGIREAVVVT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 +E ++ + + S + L + + + Sbjct: 61 NDEADQISDLFDHILVLGDSPRPSSRCSYAV--------SEIGLLRWIEPGVLIELKV-- 110 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 DTG +R G+ E L+ K+ +L +I+H AD+ +S Q +RF Sbjct: 111 ----DTGMHRNGIEP-ERLEEALEIIRKRKLRLFGVITHYRSADELTSEYF-WQKKRFDE 164 Query: 185 LISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVT 237 + +S+ +L N+ + R GI++YG K + ++ V++ Sbjct: 165 VKKRVIDAGFSETRFHSHNSAALLRCRNFDEDIARVGIAIYGYNTLPKGFEGVELKPVLS 224 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 AR R+ G + YGG+ R+ ++ +GY DG+P P Sbjct: 225 LWARRASTRRLQEGARIGYGGEFTADREMPVSTYDLGYGDGWPRG-----RASEPYRTAE 279 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 GK ILG+++MD + D I + A GT Y++ Sbjct: 280 GKA--------ILGRVSMDFISVE-------GEADRICVM---EDARRAARHFGTICYEM 321 Query: 358 LVRIGTRYAKF 368 + + Sbjct: 322 TTALMPTIPRR 332 >gi|213582016|ref|ZP_03363842.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 113 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 247 KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 AGE V YGG +T++ I + A GYADGYP G + G Sbjct: 1 TLSAGERVGYGGGYSVTQEQRIGIVAAGYADGYPRHA-----------PTGTPVLVDGIR 49 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y LL + R Sbjct: 50 TRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 109 >gi|168207987|ref|ZP_02633992.1| alanine racemase family protein [Clostridium perfringens E str. JGS1987] gi|170660702|gb|EDT13385.1| alanine racemase family protein [Clostridium perfringens E str. JGS1987] Length = 350 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 120/328 (36%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K +AYGLG ++IA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKEIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + L I +L + + NLI + + + Sbjct: 61 NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A D + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKSNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + Y+ + + + + + G I + ++ Sbjct: 173 KSTVEKYRDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|218677912|ref|ZP_03525809.1| putative alanine racemase [Rhizobium etli CIAT 894] Length = 165 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 110/160 (68%) Query: 168 DDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 D+PS +N QLE FR + + Y+GI++SLA+S+GI LG +YHF LTRPGI+LYGG Sbjct: 1 DEPSHAMNRRQLESFRRVSAAYEGIDSSLAASAGIFLGEDYHFDLTRPGIALYGGEAVCG 60 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 ++PM+ V TA+ARII +R AGE VSYG +L RDS +A+ ++GYADGY + S Sbjct: 61 MANPMRPVATAQARIIQVRNVEAGETVSYGRALQLRRDSRLAIVSVGYADGYMRSQSSGG 120 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327 V GG+GFI G+ VP+ G+ITMD+T+FD+TD Sbjct: 121 VPLRQVVPQGGEGFIAGHKVPVAGRITMDLTIFDVTDLPE 160 >gi|317064205|ref|ZP_07928690.1| alanine racemase [Fusobacterium ulcerans ATCC 49185] gi|313689881|gb|EFS26716.1| alanine racemase [Fusobacterium ulcerans ATCC 49185] Length = 353 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 133/368 (36%), Gaps = 19/368 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N +++ I L N + + V+K NAYG E ++ LY+ G ++F Sbjct: 1 MAVNS-IKMLISEENLIQNIKYLEKKYAK-KILPVLKANAYGHSIEMVSEILYDNGYREF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E K+ +L G+E + + S L + + G+ Sbjct: 59 AVARLNEAEKILQNKKVTDSRILVFESIGREFFDVVKSNNTIEISANTLAELKEFIENGI 118 Query: 121 -SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D GF R G+ ++ + K L + A D + + Sbjct: 119 SPDRIQLKIDFGFGRNGIIQEDIENLKKYIEKKNLSFKGIYSHLYAVEYDEGAELIEKFT 178 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E + L + S +L G RPGI +YG ++ ++ V E Sbjct: 179 ETVKYLGKERFQMIHIQNSVGILLYGNCDMMTHLRPGIYIYGLQEEGFFQEGLKQVFKLE 238 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +I +R + ++Y + L+ + A I G + + Sbjct: 239 GKIAGVRDVSKSKYLAYNLKTTLSENDFNYAAKIKIGYGEGFSKAN----------EKSC 288 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G IL +TMD T ++ SI+ GD++ ++ + V +G ++L Sbjct: 289 CLINGKSYKIL-LVTMDNTFIEV--DESIKEGDHVALYSD---VSKVREDTGLHICEVLP 342 Query: 360 RIGTRYAK 367 I +R + Sbjct: 343 VISSRIVR 350 >gi|257469979|ref|ZP_05634071.1| alanine racemase [Fusobacterium ulcerans ATCC 49185] Length = 357 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 133/368 (36%), Gaps = 19/368 (5%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N +++ I L N + + V+K NAYG E ++ LY+ G ++F Sbjct: 5 MAVNS-IKMLISEENLIQNIKYLEKKYAK-KILPVLKANAYGHSIEMVSEILYDNGYREF 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E K+ +L G+E + + S L + + G+ Sbjct: 63 AVARLNEAEKILQNKKVTDSRILVFESIGREFFDVVKSNNTIEISANTLAELKEFIENGI 122 Query: 121 -SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 L++D GF R G+ ++ + K L + A D + + Sbjct: 123 SPDRIQLKIDFGFGRNGIIQEDIENLKKYIEKKNLSFKGIYSHLYAVEYDEGAELIEKFT 182 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 E + L + S +L G RPGI +YG ++ ++ V E Sbjct: 183 ETVKYLGKERFQMIHIQNSVGILLYGNCDMMTHLRPGIYIYGLQEEGFFQEGLKQVFKLE 242 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 +I +R + ++Y + L+ + A I G + + Sbjct: 243 GKIAGVRDVSKSKYLAYNLKTTLSENDFNYAAKIKIGYGEGFSKAN----------EKSC 292 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 I G IL +TMD T ++ SI+ GD++ ++ + V +G ++L Sbjct: 293 CLINGKSYKIL-LVTMDNTFIEV--DESIKEGDHVALYSD---VSKVREDTGLHICEVLP 346 Query: 360 RIGTRYAK 367 I +R + Sbjct: 347 VISSRIVR 354 >gi|154148940|ref|YP_001406018.1| alanine racemase [Campylobacter hominis ATCC BAA-381] gi|153804949|gb|ABS51956.1| alanine racemase [Campylobacter hominis ATCC BAA-381] Length = 336 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 124/368 (33%), Gaps = 47/368 (12%) Query: 10 KI--DLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +I D +A +N + L G + + KDN+YG G +IA G++ V S Sbjct: 3 EILLDKSAFLSNLTKISQKLGGKEKIMLIAKDNSYGHGSAQIAGIAREFGIKKAVVKSEM 62 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++ + + +L I G EK F + + + Sbjct: 63 EAEQIAEFYDEI--LILSHIPTGCEKPDFSYAINDMSH----------FSKIKNGSKVHI 110 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN--SVQLERFRT 184 VDT +R G+ ++ D L +H +D+ S F+ Sbjct: 111 SVDTLMHRNGILPEQLDDALRLVRENHLNLG-GFYTHFRASDEIGSDFFVQRENWRNFKI 169 Query: 185 LISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + +S+ I + R G++ +G ++ V++ Sbjct: 170 SAQKKCKNLGFNVVFHSCNSAAIERSEEFSDDFARVGMAQFGYFQFSEI-LGLKPVLSLY 228 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 A I R GE V YGG + D LI+ +GY DG D + Sbjct: 229 ADRISSRLLKKGERVGYGGVFEAPCDILISTYDLGYGDGLLRYNGKGDLRLGNNE----- 283 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 ILGK++MD S + G+ + +F A T Y++LV Sbjct: 284 --------KILGKMSMDSFA-------SKDAGERVCVFDD---ARVWARFFNTIEYEILV 325 Query: 360 RIGTRYAK 367 ++ + Sbjct: 326 KLSANIKR 333 >gi|254458882|ref|ZP_05072306.1| alanine racemase [Campylobacterales bacterium GD 1] gi|207084648|gb|EDZ61936.1| alanine racemase [Campylobacterales bacterium GD 1] Length = 333 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 128/346 (36%), Gaps = 51/346 (14%) Query: 31 RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90 + A V+KDNAYG G ++A GV+ V S +E + Sbjct: 27 KIAIVLKDNAYGHGISEMASLAKEYGVKKAVVRSNDEAKSIEE-------------FFEY 73 Query: 91 EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 ++ D P + + L+VDTG +R G+S+ E L Sbjct: 74 ILVLGDIPKEPSSKMRYTINDIKSISKFPKETLVELKVDTGMHRNGISMSE-LHDAFMQI 132 Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH---------YKGIEASLASSSG 201 + L + +H +D+ +S Q + F+ + + + A+S+ Sbjct: 133 KEAGLILEAVFTHHRSSDELTSEWF-WQNDNFKKVKQEAAYLAEEFGFGSLRFHSANSAS 191 Query: 202 ILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK 261 + ++ + R GI+ YG + V++ A I R+ G+ V YGG Sbjct: 192 LFRTDSFDEDMARVGIASYGCLEGYE---GFAPVLSLYADKISSREVKRGQRVGYGGTFV 248 Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 + +++ GY DG+ S G V +G+I+MD + F Sbjct: 249 AKDNCVVSNYDFGYGDGFLRNSSNE------------FVTSNG--VEQVGRISMDNSSF- 293 Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 IT+ ++ IF I A ++GT +Y++L + + Sbjct: 294 ITNEENL------LIFNNAIDA---AKSAGTISYEILTSLKASLKR 330 >gi|307243449|ref|ZP_07525605.1| putative alanine racemase [Peptostreptococcus stomatis DSM 17678] gi|306493173|gb|EFM65170.1| putative alanine racemase [Peptostreptococcus stomatis DSM 17678] Length = 358 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 36/350 (10%) Query: 7 LRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 +L+IDL A+ N + G AVVK+NAY G E+ Y AGV+ F TS+ Sbjct: 4 AKLRIDLGAIYKNATRVLKETDGG--LIAVVKNNAYNFGLERAVETFYKAGVRVFATTSL 61 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +K+R ++ + ++ + I+++ F + + Sbjct: 62 KECIKMRDLYEDIT--IISLNPAKEFDLLRKYRISTAIANL---DFVKNNLEDMKGISWQ 116 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR-- 183 L+ R G +E + + + + +H + AD+ + Sbjct: 117 LEWAGSMRRSGCRSKEEMSEILSLARDNNIDIEGVWTHFSWADEFDQDKTYEREREIWLD 176 Query: 184 --TLISHYKGIEASLASSSGILLGPNYHFQLT--RPGISLYGGTDKINKSHPMQTVVTAE 239 + A +S + R GI LYG + ++ Sbjct: 177 ALAAAKRVHKFKFIHAQNSASFARDGLLEDHSHVRLGIYLYGCLPYRECPKKIDHAISLS 236 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 AR++ I G+ + Y + +AV +GY DG + G Sbjct: 237 ARVLSIIHLDPGQSIGYCSSFVAKEPTDLAVINMGYGDGLLRS-----------RIRGHD 285 Query: 300 GFIKGYMVPILGKIT--MDMTM--FDITDSLSIEVGDYIQIFGPDIKLDD 345 I P+ ++ M ++ D ++ +GD + +G DI + + Sbjct: 286 LEINKRRYPL---VSLMMSHSVAIID----EAVTLGDEVYFYGHDIPVHE 328 >gi|213028189|ref|ZP_03342636.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 185 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 4/187 (2%) Query: 39 NAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98 NAYG G + A L + F V +EE ++LR I +L G + Sbjct: 1 NAYGHGLLETARTLPD--ADAFGVARLEEALRLRAGGITQPILLLEGFFDAADLPTISAQ 58 Query: 99 LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN-SFNKKLGQL 157 + + + + +++DTG +RLG+ +EA F + K + Q Sbjct: 59 CLHTAVHNQEQLAALEAVELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQP 118 Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGI 217 I+SH A AD+P QL+ F G + S+A+S GILL P HF RPGI Sbjct: 119 VNIVSHFARADEPECGATEHQLDIFNAFCQGKPG-QRSIAASGGILLWPQSHFDWARPGI 177 Query: 218 SLYGGTD 224 LYG + Sbjct: 178 ILYGVSP 184 >gi|222151301|ref|YP_002560457.1| alanine racemase 2 [Macrococcus caseolyticus JCSC5402] gi|222120426|dbj|BAH17761.1| alanine racemase 2 [Macrococcus caseolyticus JCSC5402] Length = 360 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 33/350 (9%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +D T N ++ N AVVK+NAY G E A AG+ F T++ Sbjct: 3 ARWTVDRTKFIENV---KSVIDNTPVMAVVKNNAYHYGLEFAIDAFLQAGITTFSTTNLN 59 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E + +R P+A IF++ + D + ++P L FY + S L Sbjct: 60 EAILIRKIAPEATIFLMNPVT-----RFNDLRQYNIQMTLPSLAFYHRYQSELDGISVHL 114 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLERF 182 + + +R G E + + N+ L + +H AD+ ++ E + Sbjct: 115 EYENLLHRSGFKTFEEMKTVIDDNNQLPVHLQMNINGIWTHFGYADEFDVIEYEIEKESW 174 Query: 183 ---RTLISHYKGIEASLASSSGILLGPNYH--FQLTRPGISLYGGTDKINKSHP-MQTVV 236 IS Y E + +S + R GI LYG + + Sbjct: 175 LKGLKWISRYHTFEMIHSQNSASFIRDKIFDEHTHVRIGIILYGSRPYASLDESVTHQSL 234 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T A +I +R GE Y +++ +AV IGY DG T S D Sbjct: 235 TVSANVIQVRNISKGESAGYSFAFTAEKETKLAVVDIGYGDGILRTRSKHD--------- 285 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 IKG PI + M ++ +++ E D + ++ +I++D+ Sbjct: 286 ---CIIKGRRYPIR-ALMMSHMFVEVDNTVEAE--DEVILYSDEIRIDEF 329 >gi|32267015|ref|NP_861047.1| alanine racemase [Helicobacter hepaticus ATCC 51449] gi|32263067|gb|AAP78113.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 344 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 133/380 (35%), Gaps = 57/380 (15%) Query: 6 FLRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + ID + K+N + +++ G + A V+KDNAYG G E+I+ G++ FV + Sbjct: 1 MSEIIIDSQSYKHNLNLISSHIGTSTELAIVLKDNAYGHGLEQISTLAREYGIKSVFVKN 60 Query: 65 VEEGVKLRLYT--PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 E ++++ A + G P + + + Sbjct: 61 YAEAMQIKDDFPCITALYGMPQGTFPPHIAFVINHK--------------EHISILPKGT 106 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLER 181 L+V+ G NR G+ E +F ++ L + + + D D + Sbjct: 107 NVELKVNAGMNRNGIQASEISEFVELILHRGLNLIGVFSHNGYGDDIDEEFERTQERFAL 166 Query: 182 FRTLISH-----YKGIEASLASSSG----ILLGPNYHFQLTRPGISLYGGTD---KINKS 229 + I + + SS + N + L R GI+ YG D + S Sbjct: 167 IKQEIKELAQKYGFPLPRFHSLSSSGAIREAMNNNINDDLVRIGIAAYGYLDVAFENPIS 226 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 ++ V A I R + Y G K+ ++++ IGY DG+ + Sbjct: 227 AKLRKVAALYADRISTRVLPQNARIGYSGCTKMDSKNIVSTYDIGYGDGFFR----VSER 282 Query: 290 HSPSVFLGGKGFIKGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPDIKLDDVA 347 H G IL +++MD M D I +F + +A Sbjct: 283 HKVYTAKG---------YQILPRLSMDCFSCMCD---------ESRICVFDD---ANTIA 321 Query: 348 LASGTTNYDLLVRIGTRYAK 367 A GT Y++L + + Sbjct: 322 QAFGTITYEILTHLSPFIKR 341 >gi|213417243|ref|ZP_03350387.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 108 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 11/117 (9%) Query: 253 LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGK 312 V YGG RD+ + V A+GY DGYP G + G VPI+G+ Sbjct: 1 PVGYGGTWVSERDTRLGVVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGR 49 Query: 313 ITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 + MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ +R A Y Sbjct: 50 VAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERIAEMTKVSAYELITRLTSRVAMKY 106 >gi|309789198|ref|ZP_07683791.1| alanine racemase, catabolic domain protein [Shigella dysenteriae 1617] gi|308922952|gb|EFP68466.1| alanine racemase, catabolic domain protein [Shigella dysenteriae 1617] Length = 165 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 4/154 (2%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL ALK N + + +AR +VVK NAYG G E+I AL G F + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIERIWSAL---GATDGFALL 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ I+D + + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQL 157 L+V++G NRLG L + + Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRASECWRN 153 >gi|291277443|ref|YP_003517215.1| alanine racemase [Helicobacter mustelae 12198] gi|290964637|emb|CBG40491.1| alanine racemase [Helicobacter mustelae 12198] Length = 342 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 132/374 (35%), Gaps = 45/374 (12%) Query: 6 FLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ ID KNN + + L + A V+KDNAYG G E++A +N G++ FV + Sbjct: 1 MAQILIDSQKYKNNLDLITSHLHDKTKLAIVLKDNAYGHGLEEMAHLSHNYGIKSVFVKN 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E K+ IF P NL PVI S L + S + Sbjct: 61 ESEARKIEHLFEHITIFYGIPSSP------LPPNLHPVIHSNQNLDLLASPCSVELKI-- 112 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER--- 181 + G NR G++ +E K LG + + D N Q+ + Sbjct: 113 ----NIGMNRNGIAPRELESMITKILQKDLGLFGVFAHNGYGDDLMEDFQNGQQIFQEIK 168 Query: 182 ----FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD---KINKSHPMQT 234 + + + +SSG L + L R G++ YG + + +Q Sbjct: 169 EQTLYLSQKLGFPRPRFHSLNSSGTLRSREFPDDLVRIGMAAYGYCGANFPLEIADRLQP 228 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + A I G + Y G L DS ++ IGY DG S Sbjct: 229 IASLWADKICTHYLPKGAKIGYSGMSVLQEDSFVSTYDIGYGDGLFRFDGTQPPYFSADG 288 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 FL IL K +MD ++ + I +F +A T Sbjct: 289 FL------------ILPKTSMDCF-------SALSTKERICVFDD---ARTLAQIFHTIP 326 Query: 355 YDLLVRIGTRYAKF 368 Y++LVRI + Sbjct: 327 YEILVRISPFIQRI 340 >gi|110803655|ref|YP_698455.1| alanine racemase [Clostridium perfringens SM101] gi|110684156|gb|ABG87526.1| putative alanine racemase [Clostridium perfringens SM101] Length = 350 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 118/328 (35%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K +AYGLG +KIA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGDAYGLGSKKIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++ E + L I +L + + NLI + + + Sbjct: 61 NIYESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKPNKLDSFIERVKNEFPNLEIDGIYTHLHNA--KYVNYTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + Y+ + + + + + G I + ++ Sbjct: 173 KSTVEKYRDKVRIIHCMASSAIINDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|313619775|gb|EFR91379.1| alanine racemase [Listeria innocua FSL S4-378] Length = 161 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 4/154 (2%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N N L AVVK NAYG G + A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQNKLPDKVALWAVVKANAYGHGIIETAKIAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++E + LR + ++ G ++ + N I S + ++ Sbjct: 66 AILDEALALREAGFRNESILVLGATRKEDANLAAKNNI---SVTVFREDWLDDLTLEAPL 122 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156 L+VD+G RLG+ +E + Sbjct: 123 RIHLKVDSGMGRLGIRSREEAQRIETTIAIDHQM 156 >gi|169342418|ref|ZP_02863482.1| alanine racemase family protein [Clostridium perfringens C str. JGS1495] gi|169299538|gb|EDS81602.1| alanine racemase family protein [Clostridium perfringens C str. JGS1495] Length = 350 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 119/328 (36%), Gaps = 20/328 (6%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + + ++L ++NN + + L N + AV+K AYGLG ++IA + + V V Sbjct: 2 SNYFWCDVNLKNIENNINVIRDLIQNKKLIAVIKGEAYGLGSKEIAEFIEDK-VDIIAVG 60 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +++E + L I +L + + NLI + + + Sbjct: 61 NIDESLCL--DNINKDILILSPLCTKDDFKDERDNLILTLDN----EEILNELDKETKKR 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL-IISHLACADDPSSHVNSVQLERF 182 + VDTG NR+G+ + F N+ I +HL A D + Q+E F Sbjct: 115 VHIYVDTGMNRMGIKSNKLDSFIERVKNEFPNLEIDGIYTHLHNAKDVN--YTLKQIELF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG---TDKINKSHPMQTVVTAE 239 ++ + YK + + + + + G I + ++ Sbjct: 173 KSTVEKYKDKVRIIHCMASSAIVNDQLRKACDFTTGARAGNVLYGYIGFNKGIKKTYEYY 232 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD--GYPLTLSG---LDSEHSPSV 294 A+ + K G+ V YG K +D I + G G + D Sbjct: 233 AKPVNTYKVSKGQTVGYGCLFKADKDMEIGIIECGNVHGLGISREIKNNVFYDIFRMIYR 292 Query: 295 FLGGKGFI--KGYMVPILGKITMDMTMF 320 + I V ILGK+ M++T+ Sbjct: 293 RFKERSVIFNNNVPVKILGKVNMNITII 320 >gi|255024620|ref|ZP_05296606.1| hypothetical protein LmonocyFSL_16286 [Listeria monocytogenes FSL J1-208] Length = 118 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 4 NEFLRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++ID A++ N L N AVVK NAYG G ++A AG + F V Sbjct: 6 HRPTWIEIDRAAIRENIKNEQRKLPENVDLWAVVKANAYGHGIIEVARTAKEAGAKGFCV 65 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI 100 ++E + LR Q ++ G ++ + N I Sbjct: 66 AILDEALALREAGFQDDFILVLGATRKEDANLAAKNHI 103 >gi|323359913|ref|YP_004226309.1| alanine racemase [Microbacterium testaceum StLB037] gi|323276284|dbj|BAJ76429.1| alanine racemase [Microbacterium testaceum StLB037] Length = 347 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 119/369 (32%), Gaps = 39/369 (10%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 ++DL A N H + A VVKD+AY G E + + GV+ F V G Sbjct: 6 RVDLDAFARNLHRVRDAVAPAEPMFVVKDDAYAHGLEVLVRRARSEGVRWFGAFDVVTGA 65 Query: 70 KLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +R P ARIFV +L + L + L + G S L++ Sbjct: 66 AVRAIAGPDARIFVWLIGGADDLAAGIAADLDLGVGDQSLLDDLAALTADG-SARVHLKI 124 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF--RTLI 186 DTG +R G+ ++ + + + S + F Sbjct: 125 DTGLHRNGIRPEDWDAALARTATLVEQGRVRFEGIWSHISEASDADDDDARALFLAARDA 184 Query: 187 SHYKGIEA---SLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + G+E LA+S+ + L R G YG + Sbjct: 185 ARAVGLEPRFSHLAASAAGFARGEFREDLVRVGAFSYGIRPAGGPGEAELGI-------- 236 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 E ++ + DS +G A G P L+G + + Sbjct: 237 --------EPIASLTATVASVDSQGVHVDVGSAHGLPSALAGRFDVATSAGP-------- 280 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDI--KLDDVALASGTTNYDLLVRI 361 V +G T + + EVG+ + IFG D+A T ++ +R+ Sbjct: 281 -RRVEAIG-----FTSLTVAPWETAEVGEPLTIFGRGALCSATDLAELIDTIGEEIALRV 334 Query: 362 GTRYAKFYT 370 + YT Sbjct: 335 SPVLPRVYT 343 >gi|254875861|ref|ZP_05248571.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841882|gb|EET20296.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 321 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 130/339 (38%), Gaps = 23/339 (6%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 +VK NAYG+G E I + V + + ++E L+ I L GI+ Sbjct: 1 MFIVKANAYGIGIENIYKVTNDL-VDAYGIARIDEYYVLKNLGCTKDIVFLSGIYAECFD 59 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 N+IP++S+V + Y K S L D G R G + + Sbjct: 60 FKIPKNVIPILSNVLLIKDYIKYED-DKSKQVMLDFDCGMGRFGFYRDDFIKHLDMLKIS 118 Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212 + L + + L++ ++ + ++S L ++ + Sbjct: 119 GFSNIILFSHIPTGYNGYDRSKKYIDKIL---LLAEETKLKYTFSNSPVSLFDTDFLQEY 175 Query: 213 TRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272 R ++ G + + ++ ++ +A II IR GE +SYG + +D+ +A+ Sbjct: 176 IRSSSAVLGYDQEPKE---IKFSLSLKACIISIRDIPKGEYISYGNEYFCNKDTTVAILN 232 Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVG 331 IGYADG + I PIL I MD DI+ +++ Sbjct: 233 IGYADGL-----------GCEIHHDSYLLINATKCPIL-SINMDYLYVDISAIKHQLKML 280 Query: 332 DYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RYAKF 368 D I++FGP+ + L+ A T + L ++ R K Sbjct: 281 DMIELFGPNSLSLEQHANMYNITKDEALTKLNALRVRKI 319 >gi|322805977|emb|CBZ03544.1| alanine racemase [Clostridium botulinum H04402 065] Length = 121 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 45/119 (37%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 ++ + +++L L N ++ AVVK N YG G IA L G Sbjct: 3 RNHRPVWEEVNLDNLSYNMRNIKKKVNCKEIFAVVKANGYGHGALDIASTLLENGATRLS 62 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V + E +LR I +L P + I D N+ PV+ S SK S Sbjct: 63 VACLSEATELREGGITCPINILGITPPTLFEDIIDYNIEPVVFSYDYANQLSKAASLKK 121 >gi|309806954|ref|ZP_07700936.1| alanine racemase, N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|308166574|gb|EFO68771.1| alanine racemase, N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] Length = 123 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 1 MHS--NEFLRLKIDLTALKNNW-HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S + ++ +DL A+K+N + + L + AVVK N YG G I+ AG Sbjct: 1 MISGIHRPTKILVDLAAIKSNVENEIKNLKSGQKLWAVVKANGYGHGSVVISKTAIAAGA 60 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113 Q V ++E ++LR + I VL P + + ++ + + L + Sbjct: 61 QGLCVAILDEAIELRKAGIKVPILVLGITLPKFASLAAENDISLTVGDLDWLKKLA 116 >gi|309802669|ref|ZP_07696773.1| putative alanine racemase [Bifidobacterium dentium JCVIHMP022] gi|308220733|gb|EFO77041.1| putative alanine racemase [Bifidobacterium dentium JCVIHMP022] Length = 353 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 103/294 (35%), Gaps = 25/294 (8%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGN----ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +DL AL++N + ++ G VVK +AYG G A A G Sbjct: 24 RRRYPAQAIVDLAALRDNMRHLVSVVGGPNSGTAVMGVVKADAYGHGLIPAALAALAGGA 83 Query: 58 QDFFVTSVEEGVKLRLYTP-----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 E + LR +V G ++++ + + V S Sbjct: 84 TWLGTAQSHEALLLRKAGIGLDRCHILTWVYNGTAVPFDELVANDIDVSVGSLGGIDGVA 143 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADD 169 G + ++VD+GF R G + AL + + + SHLA AD Sbjct: 144 EAARRLGKTARVHVKVDSGFGRNGFTPAGFDAALAKLVPLVKEGVLHVVGQWSHLAVADA 203 Query: 170 PSSH----VNSVQLERFRTLISHYKGIE-----ASLASSSGILLGPNYHFQLTRPGISLY 220 P Q+E F+ + LA+++ L P HF+LTRPGI LY Sbjct: 204 PDVPEFVASTDRQIENFKDFTRRMEAAGIAPEIRHLANTAATLSRPEIHFELTRPGIGLY 263 Query: 221 GGTDKINKSHPMQT----VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAV 270 G P +T +A++ ++ AG +SYG Sbjct: 264 GYEADPAMGTPGTYGLKPAMTLQAQLGTVKDVEAGHGISYGRTYLTPDRHFHGN 317 >gi|224419174|ref|ZP_03657180.1| alanine racemase [Helicobacter canadensis MIT 98-5491] gi|253828107|ref|ZP_04870992.1| alanine racemase [Helicobacter canadensis MIT 98-5491] gi|313142680|ref|ZP_07804873.1| alanine racemase [Helicobacter canadensis MIT 98-5491] gi|253511513|gb|EES90172.1| alanine racemase [Helicobacter canadensis MIT 98-5491] gi|313131711|gb|EFR49328.1| alanine racemase [Helicobacter canadensis MIT 98-5491] Length = 358 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 67/386 (17%), Positives = 125/386 (32%), Gaps = 55/386 (14%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA---RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L+I+ +N+H + G + A V+KDNAYG G +++A A + FV Sbjct: 1 MAYLQINSQHFFSNYHQIAQFIGQENIHKIAIVLKDNAYGHGLKEMAQLAKEAKITTCFV 60 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + +E +++ I E + + + L Sbjct: 61 KNTKEALEIAAMFRHITIL----YPQSLEDKEALQQCLKQDNIYFCVASLEALKLYPKQT 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 L++++G NR G+ Q+ + ++L + + + D S Q F Sbjct: 117 KIELEINSGMNRNGIQAQQLQEAFEIINKRELELIGVFSHNGFGDDFGSEFYT--QNNEF 174 Query: 183 RTLISHYKGIEASLASSSGILLGP-----------------NYHFQLTRPGISLYGGTDK 225 + + + L R GI+ YG + Sbjct: 175 LMVKKKVLELCNQYSFKKPRFHFFSSSGALRAVRYNESLPLELQDDLFRIGIAFYGYLCQ 234 Query: 226 INK--SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 + ++ + + AR I G + YGG + D+L++ +GY DG Sbjct: 235 DIRFCGLNVKPIASLWARKISTYFLKKGSRIGYGGVSETKEDTLVSSYDVGYGDGLFRLR 294 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDI 341 G++ + + P + +MD GD + I Sbjct: 295 EGMELKTKEGF----------KIYP---RSSMDCLSI---------QGDREELCII---E 329 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAK 367 + A A GT Y++LV + K Sbjct: 330 DANPWAEAFGTIPYEILVHLQPTIPK 355 >gi|153841826|ref|ZP_01993440.1| alanine racemase 1 [Vibrio parahaemolyticus AQ3810] gi|149745444|gb|EDM56695.1| alanine racemase 1 [Vibrio parahaemolyticus AQ3810] Length = 129 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + + IDL+AL++N + A + ++ AVVK N YG G +A F Sbjct: 1 MSYMKAAKACIDLSALQHNLQRVKAQAPESKVMAVVKANGYGHGLRHVAKHA--NHADAF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFYSK 114 V +EE ++LR I +L G + PG ++ N+ V+ QL + Sbjct: 59 GVARIEEALQLRACGVVKPILLLEGFYSPGDLPVLVTNNIQTVVHCEEQLIALEQ 113 >gi|242309198|ref|ZP_04808353.1| alanine racemase [Helicobacter pullorum MIT 98-5489] gi|239524239|gb|EEQ64105.1| alanine racemase [Helicobacter pullorum MIT 98-5489] Length = 359 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 137/384 (35%), Gaps = 51/384 (13%) Query: 6 FLRLKIDLTALKNNWHSMNALSG---NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L+I+ +N + ++ G + A V+KDNAYG G ++A AG+ FV Sbjct: 1 MPYLQINPHYFIDNLQVIKSIIGEDEGHKIAIVLKDNAYGHGLVELAKISSEAGITSCFV 60 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + +E +++ + I E + I + + L Sbjct: 61 KNTQEAIEVAKWFEHISIL----YPQSLESETLLKSCIQRENIYFCVANIESLDLYPPKS 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL--------ACADDPSSHV 174 L++++G NR G+ + + + S KL + + + A + S+ Sbjct: 117 KIELKINSGMNRNGIQINKLQEALKKSLENKLEIVGVFSHNGFGDNIGSEFYAQNDSNLH 176 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGP-------NYHFQLTRPGISLYG--GTDK 225 ++ +F S K L+SS + L R GI+LYG D Sbjct: 177 IKREVLQFCKANSLKKPRFHFLSSSGALRAAKYNVSLPIELQDDLYRIGIALYGYLCQDS 236 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + ++ + + A+ I + G + YGG K+ D L++ IGY DG G Sbjct: 237 MLYEVQLKPIASLWAKKISTQLLKKGSRIGYGGISKVDEDMLVSTYDIGYGDGLFRVREG 296 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD--YIQIFGPDIKL 343 ++ + I + +MD GD + IF + Sbjct: 297 MELFTKEG-------------LKIFPRASMDCISI---------QGDCEEVCIFDD---V 331 Query: 344 DDVALASGTTNYDLLVRIGTRYAK 367 A A GT Y++L + + K Sbjct: 332 RPWAEAFGTIPYEILSHLHSYIPK 355 >gi|294783099|ref|ZP_06748423.1| alanine racemase [Fusobacterium sp. 1_1_41FAA] gi|294479977|gb|EFG27754.1| alanine racemase [Fusobacterium sp. 1_1_41FAA] Length = 358 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 136/377 (36%), Gaps = 32/377 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ F+ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFFVSL--DKKALYHNIEYLREY-KQKELLPVIKANAYGHDILLIAKALYDYDIKVW 57 Query: 61 FVTSVEEGVKLRLYT----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V E V + Y +++ ++ I ++ + + Sbjct: 58 AVARYSEAVSICEYFKTLSIDDFKILIFESLIDDYSLLEKYPQICP--TLNSIKDLKNAL 115 Query: 117 SCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + +S +L++D GF R G+ +E + + L LS+ + + V Sbjct: 116 ANNISIDRLSLKIDFGFGRNGIKYEEVDELKNLIKYNSLKFLSIFSHLFSASYTDGLEVI 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + L +++GI R G+ YG + M+ V Sbjct: 176 KK-FTDLVNKLGRNNFEMIHLQNAAGIYNYDVDIVTHIRTGMLTYGLQEAGFYDLDMKPV 234 Query: 236 VTAE-ARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 T + +R + V+Y + IA IGY DG+ Sbjct: 235 FTGLIGYVDSVRYVNELDYVAYQELSSIDLGTKKIAKIKIGYGDGFS------------K 282 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 IK ++ ++TMD T ++ D + VGD + ++ + +++ +G + Sbjct: 283 ANNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDEVHLY---HRPNEIKTKTGFS 336 Query: 354 NYDLLVRIGT-RYAKFY 369 +LL+ I R + + Sbjct: 337 MLELLIAISPLRVKRIF 353 >gi|237736823|ref|ZP_04567304.1| LOW QUALITY PROTEIN: alanine racemase [Fusobacterium mortiferum ATCC 9817] gi|229420685|gb|EEO35732.1| LOW QUALITY PROTEIN: alanine racemase [Fusobacterium mortiferum ATCC 9817] Length = 256 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 22/259 (8%) Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHV 174 + +++DTG RLG +E + + I SHL+ AD + Sbjct: 2 NNLKVGIHIKIDTGMGRLGFLPEEGERVVDYCLENGINIM-GIYSHLSDADGFNRESDDY 60 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILL--GPNYHFQLTRPGISLYGGTDKINKSHPM 232 Q+++F+ + ++ +SG +L + R GI +YG + Sbjct: 61 TETQIKKFQIFEKYKDKVKYLHILNSGGILRFNEEISGNIVRAGICMYGMIANYRVED-L 119 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V + +I+ IR +SYG + L + A +GYADG S Sbjct: 120 KRVFCVKTKILSIRTVEDDSFISYGRKYVLHKGETFATIGMGYADGIKKEFSNKS----- 174 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV--GDYIQIFGPDIKLDDVALAS 350 I+G PI+G+I MDM M I +S+ ++ G + + DI ++++ Sbjct: 175 ------YVIIEGEKCPIIGEICMDMCMVKIPESIKDKISLGTEVIVVRDDI-IEEI-NIE 226 Query: 351 GTTNYDLLVRIGTRYAKFY 369 ++D+L IG R + Y Sbjct: 227 HKCSWDILTGIGRRVYRVY 245 >gi|289674440|ref|ZP_06495330.1| alanine racemase [Pseudomonas syringae pv. syringae FF5] Length = 74 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 I G +LG+++MDM D+TD +G ++++G + +VA + T Y++ Sbjct: 1 TPVQIDGQPSRLLGRVSMDMLCVDLTDVPQAGLGSRVELWGKQVLASEVAQRAETIPYEI 60 Query: 358 LVRIGTRYAKFYT 370 + R + Y+ Sbjct: 61 FCNL-RRVPRIYS 72 >gi|254372286|ref|ZP_04987777.1| hypothetical protein FTCG_01352 [Francisella tularensis subsp. novicida GA99-3549] gi|254373765|ref|ZP_04989248.1| hypothetical protein FTDG_01549 [Francisella novicida GA99-3548] gi|151570015|gb|EDN35669.1| hypothetical protein FTCG_01352 [Francisella novicida GA99-3549] gi|151571486|gb|EDN37140.1| hypothetical protein FTDG_01549 [Francisella novicida GA99-3548] Length = 321 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 129/338 (38%), Gaps = 23/338 (6%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 +VK NAYG+G E I + V + + +EE L+ I L GI+ Sbjct: 1 MFIVKANAYGIGIENIYKVTNDL-VDAYGIARIEEYYVLKSLGCTKDIVFLSGIYAECFD 59 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 N+IP++ + + Y K S L D G R G + + + Sbjct: 60 FKIPKNVIPILGNELLIKDYIKYED-DKSKQVMLDFDCGMGRFGFYRDDFIKHLDTIKSS 118 Query: 153 KLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212 + L + + L++ ++ + ++S L ++ + Sbjct: 119 GFSNIILFSHIPTGYNGYDRSKRYIDKIL---LLAEETKLKYTFSNSPVSLFDTDFQQEY 175 Query: 213 TRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAA 272 R ++ G + + ++ ++ +A II IR GE +SYG + +D+ +A+ Sbjct: 176 IRSSSAVLGYDQEPKE---IKFSLSLKACIISIRDIPKGEYISYGNEYFCNKDTTVAILN 232 Query: 273 IGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVG 331 IGYADG + I PIL I MD DI+ +++ Sbjct: 233 IGYADGL-----------GCEIHHDSYLLINATKCPIL-SINMDYLYVDISAIKHQLKML 280 Query: 332 DYIQIFGPD-IKLDDVALASGTTNYDLLVRIGT-RYAK 367 D I++FGP+ + L+ A T + L ++ R K Sbjct: 281 DMIELFGPNSLSLEQHASMYNITKDEALTKLNALRVRK 318 >gi|239637087|ref|ZP_04678081.1| alanine racemase 2 [Staphylococcus warneri L37603] gi|239597437|gb|EEQ79940.1| alanine racemase 2 [Staphylococcus warneri L37603] Length = 358 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 135/349 (38%), Gaps = 37/349 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D A NN + AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VDTEAFYNNAKKVKNQQP---IMAVVKNNAYHYGLEFAVRQFLRAGINTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A +F++ ++ + D ++ + S+ + + + L+ + Sbjct: 64 VRELAPDATVFLMNAVY--DFDTVRDYHIHMTLPSLKYYYEHKEDL---RDIHVHLEFEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G +QE L ++ N K +S + +H AD+ V+ + Sbjct: 119 LLHRSGFKTLEEIQEVLQDHQHNKNPKRMIISGLWTHFGYADEFGVTEYDVERSAWLNVL 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVT 237 TL++ + + +S H R GI+LYG + +Q +T Sbjct: 179 HTLLNEGYQFDYIHSQNSASYYREGQVVLPHHTHARVGIALYGSRPYSGLNESAIQQALT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +A +I IR+ G+ Y + D+ +AV +GY DG Sbjct: 239 VKANVIQIREVQNGDYCGYSWAFETQHDNTKLAVVDVGYGDGILRA------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ + + + D + ++ +++D+ Sbjct: 287 QHEALINGKRYPIR-ALMMSHMFVEVDEHVHAQ--DQVVLYNESMRIDE 332 >gi|330684704|gb|EGG96402.1| putative alanine racemase [Staphylococcus epidermidis VCU121] Length = 358 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 131/349 (37%), Gaps = 37/349 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D A +N + AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VDTEAFYSNAKKVKNQQP---IMAVVKNNAYHYGLEFAVKQFLRAGINTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A +F++ ++ + D ++ + S+ + + L+ + Sbjct: 64 VRELAPDATVFLMNAVY--DFDTVRDYHIHMTLPSLNYYYEHKADL---RDIHVHLEFEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G +Q+ L + N + +S + +H AD+ + + Sbjct: 119 LLHRSGFKTLEEIQQVLQDHQQNKNSERMIISGLWTHFGYADEFGVPEYDEERSAWLNVL 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKSHPMQTV-VT 237 TL++ + + +S H R GI+LYG + +T Sbjct: 179 HTLLNEGYQFDYIHSQNSASYYREGQVVLPHHTHARVGIALYGSRPYSDLDESTIQQALT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +A +I IR+ G+ Y + D+ +AV +GY DG T Sbjct: 239 VKANVIQIREVQNGDYCGYSWAFETQHDNTKLAVVDVGYGDGILRT------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ + + + D + ++ +++D+ Sbjct: 287 QHEALINGKRYPIR-ALMMSHMFVEVDEHVHAQ--DQVVLYNESMRIDE 332 >gi|154497027|ref|ZP_02035723.1| hypothetical protein BACCAP_01320 [Bacteroides capillosus ATCC 29799] gi|150273426|gb|EDN00554.1| hypothetical protein BACCAP_01320 [Bacteroides capillosus ATCC 29799] Length = 355 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 117/338 (34%), Gaps = 15/338 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L I+ A+K N + +G A A + +A G G +A L + G+ F V+ + Sbjct: 4 LIIERQAVKQNIAVVRERAGRAAIYAALTGDAGGAGLVDMARLLRDEGIGRFAVSEAADA 63 Query: 69 VKLRLYTP--QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-HPYA 125 LR + + + + + + D N + I S+ + L + Sbjct: 64 AALRKAGFVDEEILMLRSTADREELEQLVDVNAVCTIGSIDAGLALNGLAESRSTVAEAH 123 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD-DPSSHVNSVQLERFRT 184 +QVDTG G E N +S I + L D +Q + Sbjct: 124 IQVDTGLGFGGFLCTEPEKVLSAYRNLPNVAISGIYTQLHSVKADGKDAAAQIQSFQTLL 183 Query: 185 LISHYKGIEASLASSSGI---LLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 G E ++G L + R G L G + +Q V EA Sbjct: 184 EAIRSAGFETGTVHAAGSFALLHYDDALLDAVRAGSVLLGRCRRTKGD-GLQRVGYGEAS 242 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYP----LTLSGLDSEHSPSVFLG 297 + +R AG V L R + + V +GY +G+ + Sbjct: 243 LEEVRWLPAGHTVGSEQPVTLKRPTRVGVLPVGYQNGFGVARVRDPGFWAAIRRWLRGRR 302 Query: 298 GKGFIKGYMVPILGKI-TMDMTMFDITDSLSIEVGDYI 334 I G V ++G+I M+ T+ D+TD + GD + Sbjct: 303 ISVRIDGQKVKVIGRIGAME-TLLDVTD-MKCSSGDLV 338 >gi|295115115|emb|CBL35962.1| Alanine racemase [butyrate-producing bacterium SM4/1] Length = 155 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 8 RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+IDL +++N+ ++ +++ + VK NAYG G + AL A V +++ Sbjct: 11 WLEIDLDTIRSNFAALRSMAGPGIKIMPAVKANAYGHGIVESCRALEEAEADYLGVGNID 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS---- 121 E + LR Q I + G + + +LIP I SV S+L Sbjct: 71 EAILLREIGIQTPILIFAGNLVEEVADLYIRYSLIPTIFSVKAAQAISRLSKAEHPVFLG 130 Query: 122 HPYALQVDTGFNRLG 136 +T R Sbjct: 131 ICLVYNKNTQNCRGD 145 >gi|262066393|ref|ZP_06026005.1| alanine racemase [Fusobacterium periodonticum ATCC 33693] gi|291379960|gb|EFE87478.1| alanine racemase [Fusobacterium periodonticum ATCC 33693] Length = 358 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 137/377 (36%), Gaps = 32/377 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ F+ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFFVSL--DKKALYHNIEYLREY-KQKELLPVLKANAYGHNILLIAKALYDYDIKVW 57 Query: 61 FVTSVEEGVKLRLYT----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V E V + Y +++ ++ + I ++ + + Sbjct: 58 AVARYSEAVSICEYFKTLSIDDFKILIFESLIDDYSVLEKYSQICP--TLNSIKDLKNAL 115 Query: 117 SCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + VS +L++D GF R G+ +E + + L LS+ + + V Sbjct: 116 ANNVSIDRLSLKIDFGFGRNGIKYEEIDELKNLIKYNSLKFLSIFSHLFSASYTDGLEVI 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTV 235 + L +++GI R G+ YG + ++ V Sbjct: 176 KK-FTDLVNKLGKNNFEMIHLQNAAGIYNYDVEIVTHIRTGMLTYGLQEAGFYDLDLKPV 234 Query: 236 VTAE-ARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 T + +R + V+Y + IA IGY DG+ Sbjct: 235 FTGLIGYVDSVRYVNELDYVAYQELSSIDPGTKKIAKIKIGYGDGFS------------K 282 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 IK ++ ++TMD T ++ D + VGD + ++ + +++ +G + Sbjct: 283 ANNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDEVHLY---HRPNEIKTKTGFS 336 Query: 354 NYDLLVRIGT-RYAKFY 369 +LL+ I R + + Sbjct: 337 MLELLIAISPLRVKRIF 353 >gi|1150619|emb|CAA90279.1| AlaR [Streptococcus pneumoniae] Length = 111 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310 G + YG + + +IA IGYADG+ + + G PI+ Sbjct: 2 GACMGYGATYQADSEQVIATVPIGYADGWTRDMQNFS------------VLVDGQACPIV 49 Query: 311 GKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYA 366 G+++MD + + G + + G +I VA T NY+ + + R Sbjct: 50 GRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTINYEEVCLLSDRIP 107 Query: 367 KFY 369 + Y Sbjct: 108 REY 110 >gi|57866855|ref|YP_188547.1| alanine racemase [Staphylococcus epidermidis RP62A] gi|242242676|ref|ZP_04797121.1| alanine racemase [Staphylococcus epidermidis W23144] gi|57637513|gb|AAW54301.1| alanine racemase family protein [Staphylococcus epidermidis RP62A] gi|242233812|gb|EES36124.1| alanine racemase [Staphylococcus epidermidis W23144] Length = 357 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 36/348 (10%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 D A N + N AVVK+NAY G E A + F TS+ E +++ Sbjct: 8 DTEAFYQNAVKVKN---NEPIMAVVKNNAYHYGLEFAVKTFLKADINTFSTTSLNEAIRV 64 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 R P+A IF++ ++ +D ++ ++P L +Y K L+ + Sbjct: 65 RKIAPEATIFLMNPVYDFDLVKRYDIHM-----TLPSLNYYYKYKQDLKGIHVHLEYENL 119 Query: 132 FNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RT 184 +R G E + H+ N+ +S I +H AD+ ++ + + T Sbjct: 120 LHRSGFRNIEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINT 179 Query: 185 LISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTD-KINKSHPMQTVVTAE 239 L++ + + +S N H R GI+LYG + + +T + Sbjct: 180 LLNENYHFDMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQSLTVK 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +I +R G+ Y ++ D +AV IGY DG + Sbjct: 240 GNVIQVRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKH 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 288 EAIINGKRYPIR-ALMMSHMFIEVDDEVHAQ--DEVILYNKDIRIDEF 332 >gi|224476530|ref|YP_002634136.1| putative alanine racemase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421137|emb|CAL27951.1| putative alanine racemase [Staphylococcus carnosus subsp. carnosus TM300] Length = 358 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 78/351 (22%), Positives = 138/351 (39%), Gaps = 41/351 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D +N + A N AVVK+NAY G E A AG+ F TS++E V+ Sbjct: 7 VDRKKFIDNAKQVKA---NQNLMAVVKNNAYNYGLEFSVKAFQEAGINTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P+A IF++ ++ + + ++ ++P L +Y + L+ + Sbjct: 64 IRKIAPEATIFLMNAVYDFETVRENEIHM-----TLPSLAYYYEHKEDLEGVHVHLEFEN 118 Query: 131 GFNRLG----LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +R G +E L + + K +S I +H AD+ ++ E + ++ Sbjct: 119 LLHRSGLRSLDEFKEVLKDHEQNKSDKKMIISGIWTHFGYADEFDVPEYEIEKEAWLNIV 178 Query: 187 ----SHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVT 237 E A +S N R GI+LYG S +Q +T Sbjct: 179 HSLLEEGYKFELIHAQNSAAFYRENQQLLPEHTHGRVGIALYGSRPYSKLSEKQIQQSLT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I +R GE Y ++ ++ +AV +GY DG T Sbjct: 239 VKGNVIQVRDVQKGEYCGYSFAYEVEQNHTKLAVVDVGYGDGVLRT------------RA 286 Query: 297 GGKGFIKGYMVPI--LGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI L M + DS++ E D + ++ D+++D+ Sbjct: 287 KHEATINGKRYPIKAL---MMSHMFVAVDDSVTAE--DEVILYNEDMRIDE 332 >gi|319401318|gb|EFV89529.1| putative alanine racemase [Staphylococcus epidermidis FRI909] Length = 357 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 36/348 (10%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 D A N + N AVVK+NAY G E A + F TS+ E +++ Sbjct: 8 DTEAFYQNAVKVKN---NEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIQV 64 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 R P+A IF++ ++ +D ++ ++P L +Y K L+ + Sbjct: 65 RKIAPEATIFLMNPVYDFDLVKRYDIHM-----TLPSLNYYYKYKQDLKGIHVHLEYENL 119 Query: 132 FNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RT 184 +R G E + H+ N+ +S I +H AD+ ++ + + T Sbjct: 120 LHRSGFRNIEEIRKVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINT 179 Query: 185 LISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTD-KINKSHPMQTVVTAE 239 L++ + + +S N H R GI+LYG + + +T + Sbjct: 180 LLNENYHFDMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQSLTVK 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +I +R G+ Y ++ D +AV IGY DG + Sbjct: 240 GNVIQVRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKH 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 288 EAIINGKRYPIR-ALMMSHMFIEVDDEVHAQ--DEVILYNKDIRIDEF 332 >gi|251810827|ref|ZP_04825300.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060] gi|282876165|ref|ZP_06285032.1| putative alanine racemase [Staphylococcus epidermidis SK135] gi|251805662|gb|EES58319.1| alanine racemase [Staphylococcus epidermidis BCM-HMP0060] gi|281295190|gb|EFA87717.1| putative alanine racemase [Staphylococcus epidermidis SK135] gi|329732928|gb|EGG69273.1| putative alanine racemase [Staphylococcus epidermidis VCU028] Length = 357 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 36/348 (10%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 D A N + N AVVK+NAY G E A + F TS+ E +++ Sbjct: 8 DTEAFYQNAVKVKN---NEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRV 64 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 R P+A IF++ ++ +D ++ ++P L +Y K L+ + Sbjct: 65 RKIAPEATIFLMNPVYDFDLVKRYDIHM-----TLPSLNYYYKYKQNLKGIHVHLEYENL 119 Query: 132 FNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RT 184 +R G E + H+ N+ +S I +H AD+ ++ + + T Sbjct: 120 LHRSGFRNIEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINT 179 Query: 185 LISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTD-KINKSHPMQTVVTAE 239 L++ + + +S N H R GI+LYG + + +T + Sbjct: 180 LLNENYHFDMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQSLTVK 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +I +R G+ Y ++ D +AV IGY DG + Sbjct: 240 GNVIQVRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKH 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 288 EAIINGKRYPIR-ALMMSHMFIEVDDEVHAQ--DEVILYNKDIRIDEF 332 >gi|27467997|ref|NP_764634.1| putative alanine racemase [Staphylococcus epidermidis ATCC 12228] gi|293366638|ref|ZP_06613315.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)] gi|27315542|gb|AAO04676.1|AE016747_173 putative alanine racemase [Staphylococcus epidermidis ATCC 12228] gi|291319407|gb|EFE59776.1| alanine racemase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736963|gb|EGG73220.1| putative alanine racemase [Staphylococcus epidermidis VCU045] Length = 357 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 36/348 (10%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 D A N + N AVVK+NAY G E A + F TS+ E +++ Sbjct: 8 DTEAFYQNAVKVKN---NEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRV 64 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 R P+A IF++ ++ +D ++ ++P L +Y K L+ + Sbjct: 65 RKIAPEATIFLMNPVYDFDLVKRYDIHM-----TLPSLNYYYKYKQDLKGIHVHLEYENL 119 Query: 132 FNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RT 184 +R G E + H+ N+ +S I +H AD+ ++ + + T Sbjct: 120 LHRSGFRNIEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINT 179 Query: 185 LISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTD-KINKSHPMQTVVTAE 239 L++ + + +S N H R GI+LYG + + +T + Sbjct: 180 LLNENYHFDMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQSLTVK 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +I +R G+ Y ++ D +AV IGY DG + Sbjct: 240 GNVIQVRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKH 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 288 EAIINGKRYPIR-ALMMSHMFIEVDDEVHAQ--DEVILYNKDIRIDEF 332 >gi|213622235|ref|ZP_03375018.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 178 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +DL A+ +N+ ++ A+ AV+K N YGLG E IAPALY A + FFV + EGV Sbjct: 16 VDLAAVVDNYQTLARHVAPAQCGAVLKANGYGLGAEAIAPALYAANCRIFFVAQLSEGVA 75 Query: 71 LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQ-LTFYSKLMSCGVSHPYALQV 128 LR A + +L G+ P + P+++SV Q +T+ + + P +Q+ Sbjct: 76 LRNILSADAMVVLLNGVMPQAMPFCCAQQITPLLNSVDQVMTWLALQEARSQRRPVLIQL 135 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACAD 168 D+G +RLG++ ++ + IISHLA AD Sbjct: 136 DSGMSRLGVTPEQLARLAAIFRQRGWAAPDYIISHLANAD 175 >gi|167463178|ref|ZP_02328267.1| alanine racemase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 81 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +++ L AL N + ++ R AVVK +AYG G IA +G V Sbjct: 6 RPTWVEVSLDALSGNLQAFRQALPDSIRIMAVVKADAYGHGAASIAREAIASGADHLAVA 65 Query: 64 SVEEGVKLRLYTPQAR 79 ++E ++LR A Sbjct: 66 FLDEALQLREAGISAP 81 >gi|329729391|gb|EGG65797.1| putative alanine racemase [Staphylococcus epidermidis VCU144] Length = 357 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 36/348 (10%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 D A N + N AVVK+NAY G E A + F TS+ E +++ Sbjct: 8 DTEAFYQNAVKVKN---NEPIMAVVKNNAYHYGLEFAVKTFLKAEINTFSTTSLNEAIRV 64 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 R P+A IF++ ++ +D ++ ++P L +Y K L+ + Sbjct: 65 RKIAPEATIFLMNPVYDFDLVKRYDIHM-----TLPSLNYYYKYKQDLKGIHVHLEYENL 119 Query: 132 FNRLGLSLQEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----RT 184 +R G E + H+ N+ +S I +H AD+ ++ + + T Sbjct: 120 LHRSGFRNIEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINT 179 Query: 185 LISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTD-KINKSHPMQTVVTAE 239 L++ + + +S N H R GI+LYG + + +T + Sbjct: 180 LLNENYHFDMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQSLTVK 239 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 +I +R G+ Y ++ D +AV IGY DG + Sbjct: 240 GNVIQVRYVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKS------------RAKH 287 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 288 EAIINGKRYPIR-ALMMSHMFIEVDDEVHAQ--DEVILYNKDIRIDEF 332 >gi|46206247|ref|ZP_00210260.1| COG0787: Alanine racemase [Magnetospirillum magnetotacticum MS-1] Length = 281 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 4/145 (2%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +DL A+++N ++ L+ ++ AVVK +AYG G A G Sbjct: 54 PARAVVDLAAVRDNVRALADLAPSSEVMAVVKADAYGHGLVASALGALAGGATWLGTAQP 113 Query: 66 EEGVKLRLY--TPQARIFVLYGIHPGQEKIIF--DTNLIPVISSVPQLTFYSKLMSCGVS 121 E + LR P + + PG + + + + + G + Sbjct: 114 GEALALRAAGVGPDRARVLTWLYPPGAPLRDLVEAHVDVSLAARWAVDEVVAAARAAGRT 173 Query: 122 HPYALQVDTGFNRLGLSLQEALDFT 146 L VDTG R G+ + D Sbjct: 174 ARVHLAVDTGLGRNGIMPADLPDVL 198 >gi|218458070|ref|ZP_03498161.1| alanine racemase protein [Rhizobium etli Kim 5] Length = 73 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTNYDL 357 + KG +PI+G+++MD T DIT + +G +++ GP+ LDDVA +GT +Y++ Sbjct: 1 VYHKGIRLPIVGRVSMDSTTVDITALPEGALSLGSLVEVLGPNQTLDDVAGDAGTISYEI 60 Query: 358 LVRIGTRYAKFY 369 L +G RY + Y Sbjct: 61 LTGLGDRYDRQY 72 >gi|70726513|ref|YP_253427.1| alanine racemase 2 [Staphylococcus haemolyticus JCSC1435] gi|68447237|dbj|BAE04821.1| alanine racemase 2 [Staphylococcus haemolyticus JCSC1435] Length = 358 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 37/349 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D A N ++ +GN+ AVVK+NAY G E + AG+ F TS++E +K Sbjct: 7 VDKEAFLQN--AIKVKNGNS-IMAVVKNNAYHYGLEFAVTSFLKAGINTFSTTSLKEAIK 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ + + ++P L +Y K + L+ + Sbjct: 64 VREIAPDATIFLMNAVYDFE-----KVRHYQIQMTLPSLAYYYKYKNDLSGIKVHLEFEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G ++E L+ H + N+ +S + +H AD+ S++ E + Sbjct: 119 LLHRSGFRTLEEIREVLNDHHINSNEDKMIISGLWTHFGYADEFDVPEYSIEREAWLNIV 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVT 237 TL+ + A +S H R GI+LYG + + ++ +T Sbjct: 179 DTLLDEGYHFDLIHAQNSASYYREGQKLLPHHTHARVGIALYGSRPYSALNEYSIKQSLT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I +R+ AG+ Y + TRD +AV +GY DG + Sbjct: 239 VKGNVIQVREVNAGDNCGYSFAFEATRDHTRLAVVDVGYGDGILKS------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + IKG PI + M ++ + + + D + ++ DI++D+ Sbjct: 287 KHEALIKGKRYPIR-ALMMSHMFVEVDEEVDAQ--DEVILYNNDIRIDE 332 >gi|242373698|ref|ZP_04819272.1| alanine racemase 2 [Staphylococcus epidermidis M23864:W1] gi|242348666|gb|EES40268.1| alanine racemase 2 [Staphylococcus epidermidis M23864:W1] Length = 358 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 134/350 (38%), Gaps = 37/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D A N ++ AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VDTEAFYQNAVNVRNEQP---IMAVVKNNAYHYGLEFAVKQFLKAGINTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ + + + + S+ Y + + L+ + Sbjct: 64 VREIAPHATIFLMNAVY--DFDTVREYQIHMTLPSLVYYYEYKEDL---KGIHVHLEFEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G L E L+ + N + +S + +H AD+ ++ E + Sbjct: 119 LLHRSGFKNLDELHEVLEDHAQNDNSEKMIISGLWTHFGYADEFDVPEYGIEREAWLNVL 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVT 237 TL+ E A +S + R GI+LYG +Q +T Sbjct: 179 NTLLEEGYTFEMIHAQNSASYYREGQQVLPYHTHARVGIALYGSRPYRKLDTSRIQQSLT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I R+ AG+ Y + T+D +AV +GY DG + Sbjct: 239 VKGNVIQTREVNAGDYCGYSFAFEATKDHTRLAVVDVGYGDGILKS------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 287 RHEAMINGKRYPIR-ALMMSHMFVEVDDEVHAQ--DEVVLYNNDIRIDEF 333 >gi|314936455|ref|ZP_07843802.1| alanine racemase family protein [Staphylococcus hominis subsp. hominis C80] gi|313655074|gb|EFS18819.1| alanine racemase family protein [Staphylococcus hominis subsp. hominis C80] Length = 357 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 132/348 (37%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D N + N AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VDSKIFLRNATKVKN---NQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ + + ++P L +Y + S L+ + Sbjct: 64 VRKLAPHATIFLMNAVYDFDTVRNNNIQM-----TLPSLEYYYQYKSELKDINVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKL--GQLSLIISHLACADDPSSHVNSVQLERF----R 183 +R G +L E + H+ N + + +H AD+ ++ E + Sbjct: 119 LLHRSGFKNLDEIKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVN 178 Query: 184 TLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 TL++ E A +S + R GI+LYG H ++ +T Sbjct: 179 TLLNEGYQFELIHAQNSASYYREGQQLLPYHTHARVGIALYGSRPYSKLDEHEIEQALTV 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I +R+ G+ Y + D +AV IGY DG Sbjct: 239 KGNVIQVREVNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGILKK------------RAT 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDDDVHAQ--DEVILYNNDIRIDE 331 >gi|228476139|ref|ZP_04060847.1| alanine racemase 2 [Staphylococcus hominis SK119] gi|228269962|gb|EEK11442.1| alanine racemase 2 [Staphylococcus hominis SK119] Length = 357 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 132/348 (37%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D N + N AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VDSKIFLRNATKVKN---NQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ + + ++P L +Y + S L+ + Sbjct: 64 IRKLAPHATIFLMNAVYDFDTVRNNNIQM-----TLPSLEYYYQYKSELKDINVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKL--GQLSLIISHLACADDPSSHVNSVQLERF----R 183 +R G +L E + H+ N + + +H AD+ ++ E + Sbjct: 119 LLHRSGFKNLDEIKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVN 178 Query: 184 TLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINK-SHPMQTVVTA 238 TL++ E A +S + R GI+LYG H ++ +T Sbjct: 179 TLLNEGYQFELIHAQNSASYYREGQQLLPYHTHARVGIALYGSRPYSKLGEHEIEQALTV 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + +I +R+ G+ Y + D +AV IGY DG Sbjct: 239 KGNVIQVREVNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGILKK------------RAT 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDDDVHAQ--DEVILYNNDIRIDE 331 >gi|218516484|ref|ZP_03513324.1| alanine racemase protein [Rhizobium etli 8C-3] Length = 189 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%) Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLY--GGTDKINKSHPMQTVVTAEARIIL 244 + G S A+S G+ LG YH L RP + G T ++PM+ VV + ++ Sbjct: 5 DEFPGFNISFANSGGVFLGDAYHGVLARPRHTPLYGGRTITPAGTNPMEPVVRLDVAVVQ 64 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 R +G + YGG R++ +A A GYADG P +L + + KG Sbjct: 65 TRTVPSGARIGYGGAHVTRRETRLATIAAGYADGLPRSLGDCSA-----------VYHKG 113 Query: 305 YMVPILGKITMDMTMFDITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN 354 +PI+G+++MD DIT + +G +++ GP+ L+DVA A+GT + Sbjct: 114 IRLPIIGRVSMDSATVDITALPEGALRLGSLVEVLGPNQTLEDVAGAAGTIS 165 >gi|261883963|ref|ZP_06008002.1| alanine racemase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 235 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 100/222 (45%), Gaps = 23/222 (10%) Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G P LQ DTG +RLGLS +E N + ISHLA D+P + VN+ Q Sbjct: 19 GKKLPALLQFDTGMSRLGLSAKEFDRLLENVTLLSRIDIKFAISHLANGDEPGNAVNARQ 78 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS--------- 229 L + L++ + A+LA+S G LG Y+F L RPGI+LYG + Sbjct: 79 LAKMTALLARLPKLPAALANSGGTFLGKTYYFDLARPGIALYGIDPERQHDFSDKVAHEN 138 Query: 230 ----HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 H + V+T AR+I +R G V YGG IA A+GYADG +LS Sbjct: 139 KKPKHSILPVLTLSARVIQVRDVDKGATVGYGGTYVANGPMRIATIAVGYADGLVRSLSN 198 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS 327 + +PI+G++++D D+T Sbjct: 199 KGRRPFSA----------NTRLPIIGRVSIDSITLDVTSLPE 230 >gi|33322502|gb|AAQ06978.1|AF496305_1 alanine racemase [Lactobacillus delbrueckii subsp. lactis] Length = 99 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 N L I+L A+K N L + VVK NAYG G ++AP + AG F V Sbjct: 5 NRPAALHINLAAIKENTRQAKDHLKPGQKLFCVVKANAYGHGASRLAPVMEEAGADGFCV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 ++EG++LR I V Sbjct: 65 AMLDEGLELRRAQIVKPILVXGLQPXEXAA 94 >gi|73662660|ref|YP_301441.1| alanine racemase 2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495175|dbj|BAE18496.1| alanine racemase 2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 357 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 135/345 (39%), Gaps = 28/345 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ K N ++ + + AVVK+NAY G E + G+ F TS++E ++ Sbjct: 7 VNRQLFKENAKNVKQ---DNQIMAVVKNNAYHYGLEFAVEQFLDIGINTFSTTSLKEAIR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ +KI + + + S + L V Y + Sbjct: 64 IRKLAPNATIFLMNAVY-EFDKIRENQIQMTLPSLSFYYENINDLYDIQVHLEYENLLHR 122 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI---- 186 + ++E + + + N+ +S + +H AD+ +++ + ++ Sbjct: 123 SGLKTLDEIKEVIHHHNQNKNEHKMHISGLWTHFGYADEFDVPDYNIERAAWLEIVDTLL 182 Query: 187 SHYKGIEASLASSSGILLGPN---YHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEARI 242 E A +S + R GI+LYG +Q +T + + Sbjct: 183 DEGYEFEMIHAQNSASYYREQGVLPNHTHARIGIALYGSRPYSTINESDIQQSLTVKGNV 242 Query: 243 ILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 I +R+ AGE Y + T+++ +AV +GY DG + Sbjct: 243 IQVREVNAGEFCGYSFAFEATKNNTKLAVVDVGYGDGIL------------KARAQHEAL 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 I PI + M ++ DS++ + D + ++ I++D+ Sbjct: 291 INHKRYPIR-ALMMSHMFVEVDDSVNAQ--DEVILYNNHIRVDEF 332 >gi|289550806|ref|YP_003471710.1| Putative alternative form of diaminopimelate epimerase [Staphylococcus lugdunensis HKU09-01] gi|289180338|gb|ADC87583.1| Putative alternative form of diaminopimelate epimerase [Staphylococcus lugdunensis HKU09-01] Length = 358 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 70/350 (20%), Positives = 132/350 (37%), Gaps = 37/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ NN ++ N AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VNSDIFFNNVVTVKN---NQPIMAVVKNNAYHYGLEYAVNMFLKAGINTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P+A IF++ ++ ++ ++P L +Y S L+ + Sbjct: 64 IRKLAPKATIFLMNAVYDFDIVRHNRIHM-----TLPSLQYYYANKSNLYDINVHLEYEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G L+E L + ++ + +H AD+ + + Sbjct: 119 LLHRSGFKNLSELREVLKDHEQNNQPHKMHITGLWTHFGYADEFDVPEYDTEKRAWLKVL 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKIN-KSHPMQTVVT 237 TL++ + A +S + R GI+LYG + K ++ +T Sbjct: 179 NTLLAEGYTFDMIHAQNSASFYREQHQVLSNHTHARVGIALYGSRPYSSLKPSEIKQALT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +A +I +R+ G+ Y + + +AV IGY DG + Sbjct: 239 VKANVIQVREVNKGDYCGYSFAYECKNHHTRLAVVDIGYGDGILKS------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 I G PI + M ++ + + D + ++ DI++D+ Sbjct: 287 QHDVIINGKRYPIR-ALMMSHMFVEVDELVHAR--DEVVLYNNDIRIDEF 333 >gi|256026743|ref|ZP_05440577.1| alanine racemase [Fusobacterium sp. D11] gi|289764740|ref|ZP_06524118.1| alanine racemase [Fusobacterium sp. D11] gi|289716295|gb|EFD80307.1| alanine racemase [Fusobacterium sp. D11] Length = 359 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 67/378 (17%), Positives = 135/378 (35%), Gaps = 33/378 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKDALYHNIEYLREY-KQKELLPVIKANAYGHNSLLIAKALYDFNLKTW 57 Query: 61 FVTSVEEGVKLRLY-----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + + Y + +++ + I ++ + Sbjct: 58 AVARFSEAISITEYMMNNFSINDFKILVFESLNDDYSFLEKYPQICP--TINSIKDLKNA 115 Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++ + +L++D GF R G+ +E + + L LS+ + + V Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGVKEEEVDELKNLIKFNSLKFLSIFSHLFSASYTDGLEV 175 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + L +++GI R G+ YG + ++ Sbjct: 176 IRK-FTEVVNKLGRNNFQMIHLQNAAGIYNYDVEVVTHIRTGMLTYGLQEAGFYDLDLKP 234 Query: 235 VVTAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V T + +R + V+Y + IA IGY DG+ Sbjct: 235 VFTGLIGYVDSVRYVNELDYVAYEDLSSISPKTKKIAKIKIGYGDGFL------------ 282 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 IK I+ ++TMD T ++ D + VGD + ++ + +++ L +G Sbjct: 283 KANNKTTCLIKKKEY-IISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKLRTGI 336 Query: 353 TNYDLLVRIGT-RYAKFY 369 + + L+ I R + + Sbjct: 337 SMLEFLIAISPLRVKRIF 354 >gi|260494827|ref|ZP_05814957.1| alanine racemase [Fusobacterium sp. 3_1_33] gi|260197989|gb|EEW95506.1| alanine racemase [Fusobacterium sp. 3_1_33] Length = 359 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 67/378 (17%), Positives = 136/378 (35%), Gaps = 33/378 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKDALYHNIEYLREY-KQKELLPVIKANAYGHNSLLIAKALYDFNLKTW 57 Query: 61 FVTSVEEGVKLRLY-----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + + Y + +++ + + I ++ + Sbjct: 58 AVARFSEAISITEYMMNNFSINDFKILVFESLNDDYSFLEKYSQICP--TINSIKDLKNA 115 Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++ + +L++D GF R G+ +E + + L LS+ + + V Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGVKEEEVDELKNLIKFNSLKFLSIFSHLFSASYTDGLEV 175 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + L +++GI R G+ YG + ++ Sbjct: 176 IRK-FTEVVNKLGRNNFQMIHLQNAAGIYNYDVEVVTHIRTGMLTYGLQEAGFYDLDLKP 234 Query: 235 VVTAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V T + +R + V+Y + IA IGY DG+ Sbjct: 235 VFTGLIGYVDSVRYVNELDYVAYEDLSSISPKTKKIAKIKIGYGDGFL------------ 282 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 IK I+ ++TMD T ++ D + VGD + ++ + +++ L +G Sbjct: 283 KANNKTTCLIKKKEY-IISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKLRTGI 336 Query: 353 TNYDLLVRIGT-RYAKFY 369 + + L+ I R + + Sbjct: 337 SMLEFLIAISPLRVKRIF 354 >gi|315658301|ref|ZP_07911173.1| alanine racemase [Staphylococcus lugdunensis M23590] gi|315496630|gb|EFU84953.1| alanine racemase [Staphylococcus lugdunensis M23590] Length = 358 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 70/350 (20%), Positives = 132/350 (37%), Gaps = 37/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ NN ++ N AVVK+NAY G E AG+ F TS++E V+ Sbjct: 7 VNSDIFFNNVVTVKN---NQPIMAVVKNNAYHYGLEYAVNMFLKAGINTFSTTSLKEAVR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P+A IF++ ++ ++ ++P L +Y S L+ + Sbjct: 64 IRKLAPKATIFLMNAVYDFDIVRHNRIHM-----TLPSLQYYYANKSNLYDINVHLEYEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G L+E L + ++ + +H AD+ + + Sbjct: 119 LLHRSGFKNLSELREVLKDHAQNNQPHKMHITGLWTHFGYADEFDVPEYDTEKRAWLKVL 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKIN-KSHPMQTVVT 237 TL++ + A +S + R GI+LYG + K ++ +T Sbjct: 179 NTLLAEGYTFDMIHAQNSASFYREQHQVLSNHTHARVGIALYGSRPYSSLKPSEIKQALT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 +A +I +R+ G+ Y + + +AV IGY DG + Sbjct: 239 VKANVIQVREVNKGDYCGYSFAYECKNHHTRLAVVDIGYGDGILKS------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 I G PI + M ++ + + D + ++ DI++D+ Sbjct: 287 QHDVIINGKRYPIR-ALMMSHMFVEVDELVHAR--DEVVLYNNDIRIDEF 333 >gi|332654849|ref|ZP_08420591.1| putative alanine racemase [Ruminococcaceae bacterium D16] gi|332516192|gb|EGJ45800.1| putative alanine racemase [Ruminococcaceae bacterium D16] Length = 355 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 72/349 (20%), Positives = 128/349 (36%), Gaps = 31/349 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCE--------KIAPALYNAGV 57 RL I+ +A++NN + + A YG+ ++A L +AGV Sbjct: 1 MRRLIIERSAIRNNMAVIKERAQGAAL--------YGVVSGQGGGVGAVRLARLLRDAGV 52 Query: 58 QDFFVTSVEEGVKLRLYTPQARI--FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 F V SVEE LR + + + + + + D +++ +SSV + + Sbjct: 53 TRFGVNSVEEAQLLRESGFETEEILMLRSTVDREELEQLVDLSVVCTVSSVDTGLALNAV 112 Query: 116 MSCGVS-HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + +QVDTG G + E + LS I + L A S Sbjct: 113 AENRSTVAEAHIQVDTGLGFGGFLISEPEKILLAYRSLPNVALSGIYTQL-HAVTGKSQE 171 Query: 175 NSVQLERFRTLISHYKGI-----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 QL++F+ ++ A S ++ + R G ++ G + Sbjct: 172 VDGQLKQFQQVLEAIHQAGFETGTVHAAGSFALMHFDDARLDAVRAGSAILGRCRRTKGD 231 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSG 285 + TV EA I +R G V + + + +AV +GY +G+ P + S Sbjct: 232 -GLTTVGYGEASITEVRWLPKGHTVGADKLITMKKPTRVAVLPVGYQNGFGVERPRSQSL 290 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 L+ + + G V ++G I T+ ++TD GD Sbjct: 291 LELWRAWRRSRNRTVRLNGQRVRVIGSIGASETILNVTDV-KCSAGDVA 338 >gi|78776580|ref|YP_392895.1| alanine racemase [Sulfurimonas denitrificans DSM 1251] gi|78497120|gb|ABB43660.1| Alanine racemase [Sulfurimonas denitrificans DSM 1251] Length = 338 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 65/352 (18%), Positives = 130/352 (36%), Gaps = 58/352 (16%) Query: 31 RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90 + A V+KDNAYG G +++ G++ V R A F Y + G Sbjct: 27 KIALVLKDNAYGHGLVEMSSMAKEYGIKR-AVVRTH-----REAEI-AESFFSYILVLGD 79 Query: 91 EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 + + I+ + + + L++D+G +R G+++ E + Sbjct: 80 IPTMVSKTIRYTINDLESIDKF------PKETRVELKIDSGMHRNGIAIDEIEE-AFIKI 132 Query: 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS---------HYKGIEASLASSSG 201 + L + +H AD+ +S Q + F + + ++S+ Sbjct: 133 KARGLLLEGLFTHHRSADELTSEWF-WQKKNFEDAKRIAKELAIKYGFAPLRFHSSNSAA 191 Query: 202 ILLGPNYHFQLTRPGISLYGGT--DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259 + ++ + R GI+ YG K + V++ A+ + RK + + V YGG Sbjct: 192 LFRNASFDEDMARVGIAAYGCMTLPKPLHVDGFKPVLSLWAKKLSSRKLKSHQRVGYGGD 251 Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVP----ILGKITM 315 ++ D +++ GY +G+ GY P ++G+I+M Sbjct: 252 GEILSDGVVSNYDFGYGEGFLR------------------VCANGYKTPEGIELIGRISM 293 Query: 316 DMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAK 367 D +S + D + IF VA + T +Y++L + + Sbjct: 294 D-------NSSFLSSKDKLLIFD---SALHVATYASTISYEVLTSLKPEIKR 335 >gi|255030944|ref|ZP_05302895.1| hypothetical protein LmonL_20763 [Listeria monocytogenes LO28] Length = 199 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 19/209 (9%) Query: 121 SHPYALQVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL 179 + L+VD+G RLG+ +EA S N QL I +H A AD + QL Sbjct: 3 TLRIHLKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQL 62 Query: 180 ERFRTLISHYKGIEASLA--SSSGILLGPNYHFQLTRPGISLYGGTDKIN----KSHPMQ 233 +F+T+++ K + +S+ LL P F R GIS+YG T ++ Sbjct: 63 AKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFGISMYGLTPSTEIKTSLPFELK 122 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + ++ +++ G+ VSYG T +A IGYADG SG Sbjct: 123 PALALYTEMVHVKELAPGDSVSYGATYTATEREWVATLPIGYADGLIRHYSGF------- 175 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDI 322 + G + PI+G++ MD T+ + Sbjct: 176 -----HVLVGGELAPIIGRVCMDQTIIKL 199 >gi|254304083|ref|ZP_04971441.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324275|gb|EDK89525.1| alanine racemase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 359 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 139/378 (36%), Gaps = 33/378 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKDALYHNIEYLREY-KQKELLPVIKANAYGHNSLLIAKALYDFNIKTW 57 Query: 61 FVTSVEEGVKLRLY-----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + + Y + +++ + I ++ + Sbjct: 58 AVARFSEAITIIEYMMDNFSINDFKILVFESLGDDYSFLEKYPEICP--TINSIKDLKNA 115 Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++ +S +L++D GF R G+ +E + N + I SHL A Sbjct: 116 LANNISIDRLSLKIDFGFGRNGIKAEEVDEL-KNLIKFNSLKFLGIFSHLFSATYTDGLE 174 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + + L +++GI R G+ YG + H ++ Sbjct: 175 VIKKFTEVVSKLGRDNFEMVHLQNAAGIYNYDVDVVTHIRTGMLTYGLQEAGFYDHDLKP 234 Query: 235 VVTAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V T + +R + V+Y + IA IGY DG+P Sbjct: 235 VFTGLIGFVDSVRYVSELDYVAYEDLSSISPKTKKIAKIKIGYGDGFP------------ 282 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 IK ++ ++TMD T ++ D + VGD + ++ + +++ + +G Sbjct: 283 KANNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKMRTGL 336 Query: 353 TNYDLLVRIGT-RYAKFY 369 + + L+ I R + + Sbjct: 337 SMLEALIAISPLRIKRIF 354 >gi|237745050|ref|ZP_04575531.1| alanine racemase [Fusobacterium sp. 7_1] gi|229432279|gb|EEO42491.1| alanine racemase [Fusobacterium sp. 7_1] Length = 359 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 66/378 (17%), Positives = 135/378 (35%), Gaps = 33/378 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKDALYHNIEYLREY-KQKELLPVIKANAYGHNSLLIAKALYDFNLKTW 57 Query: 61 FVTSVEEGVKLRLY-----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 V E + + Y + +++ + I ++ + Sbjct: 58 AVARFSEAISITEYMMNNFSINDFKILVFESLNDDYSFLEKYPQICP--TINSIKDLKNA 115 Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++ + +L++D GF R G+ +E + + L LS+ + + V Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGVKEEEVDELKNLIKFNSLKFLSIFSHLFSASYTDGLEV 175 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + L +++GI R G+ YG + ++ Sbjct: 176 IRK-FTEVVNKLGRNNFQMIHLQNAAGIYNYDVEVVTHVRTGMLTYGLQEAGFYDLDLKP 234 Query: 235 VVTAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V T + +R + V+Y + IA IGY DG+ Sbjct: 235 VFTGLIGYVDSVRYVNELDYVAYEDLSSISPKTKKIAKIKIGYGDGFL------------ 282 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 IK ++ ++TMD T ++ D + VGD + ++ + +++ L +G Sbjct: 283 KANNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKLRTGI 336 Query: 353 TNYDLLVRIGT-RYAKFY 369 + + L+ I R + + Sbjct: 337 SMLEFLIAISPLRVKRIF 354 >gi|297518400|ref|ZP_06936786.1| alanine racemase [Escherichia coli OP50] Length = 72 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLL 358 + G +G ++MDM D+T +G ++++G +IK+DDVA A+GT Y+L+ Sbjct: 1 PVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELM 60 Query: 359 VRIGTRYA 366 + R Sbjct: 61 CALALRVP 68 >gi|314933577|ref|ZP_07840942.1| alanine racemase family protein [Staphylococcus caprae C87] gi|313653727|gb|EFS17484.1| alanine racemase family protein [Staphylococcus caprae C87] Length = 358 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 73/350 (20%), Positives = 138/350 (39%), Gaps = 37/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D N + AVVK+NAY G E AG+Q F TS++E ++ Sbjct: 7 VDTEVFYQNAVKVRN---EQSIMAVVKNNAYHYGLEFSVKEFLKAGIQTFSTTSLKEAIR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++ ++P LT+Y + + L+ + Sbjct: 64 VREIAPHATIFLMNAVYEFDTVREYEIHM-----TLPSLTYYYEHKEDLRNIHVHLEFEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 +R G L E L+ + + +S I +H AD+ ++ + + ++ Sbjct: 119 LLHRSGFKDLEELHEVLEDHAQNKSDNKMIISGIWTHFGYADEFDVPEYDIERQAWLNVL 178 Query: 187 S----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKIN-KSHPMQTVVT 237 + + A +S H R GI+LYG K +Q +T Sbjct: 179 NTLLGEGYSFDMIHAQNSASFYREGQVVLPHHTHARVGIALYGSRPYSKLKESEIQQSLT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I +R+ AG+ Y + T++ +AV IGY DG + Sbjct: 239 VKGNVIQVREVNAGDYCGYSFAYEATKNQTQLAVVDIGYGDGILKS------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 287 QHEAIINGKRYPIR-ALMMSHMFVEVDDEVHAQ--DEVVLYNNDIRIDEF 333 >gi|319892398|ref|YP_004149273.1| Putative diaminopimelate epimerase [Staphylococcus pseudintermedius HKU10-03] gi|317162094|gb|ADV05637.1| Putative diaminopimelate epimerase [Staphylococcus pseudintermedius HKU10-03] Length = 359 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 35/341 (10%) Query: 20 WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79 ++ ++ N AVVK+NAY G + AG+ F TS+ E V++R P+A Sbjct: 13 LQNVKQVTQNQSVMAVVKNNAYNYGLDFAVQMFQQAGIDTFSTTSLVEAVRIRELAPEAT 72 Query: 80 IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL 139 IF+ ++ E N I + ++P LTFY + + L+ + +R G Sbjct: 73 IFL---MNATDEFERLRANDIHM--TLPSLTFYRENKAALAGVKVHLEYENLLHRSGFKT 127 Query: 140 QEALDFTHNSFNKKL---GQLSLIISHLACADDPSSHVNSVQLERFRTLIS------HYK 190 ++ L + +++ + +H AD+ + + E + T++ Y Sbjct: 128 KDELLAVLADHEQNPAPKMEITGLWTHFGYADEFDVDMYEKEREAWLTIVETLVKQRGYH 187 Query: 191 GIEASLASSSGILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTV-VTAEARIILIR 246 +S+ F R GI+LYG + S T +T +A +I +R Sbjct: 188 FDLIHAQNSASYYREGQRVFDHHTHARIGIALYGSRPYASLSPGCITQALTVKANVIQLR 247 Query: 247 KALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 G+ Y + + +AV +GY DG T I G Sbjct: 248 NVQQGDHCGYSFAYTVEQPHTRLAVVDVGYGDGILRT------------RAQHDVSINGK 295 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDD 345 PI + M ++ D++S + D + ++ D+++DD Sbjct: 296 RYPIR-ALMMSHMFVEVDDTVSAK--DSVILYNNSDLRIDD 333 >gi|223043272|ref|ZP_03613319.1| alanine racemase 2 [Staphylococcus capitis SK14] gi|222443483|gb|EEE49581.1| alanine racemase 2 [Staphylococcus capitis SK14] Length = 358 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 138/350 (39%), Gaps = 37/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D N + AVVK+NAY G E AG+Q F TS++E ++ Sbjct: 7 VDTEVFYQNAVKVRN---EQSIMAVVKNNAYHYGLEFSVKEFLKAGIQTFSTTSLKEAIR 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++ ++P LT+Y + + L+ + Sbjct: 64 VREIAPHATIFLMNAVYEFDTVREYEIHM-----TLPSLTYYYEHKEDLRNIHVHLEFEN 118 Query: 131 GFNRLGLS----LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF---- 182 +R G L E L+ + + +S I +H AD+ ++ + + Sbjct: 119 LLHRSGFKDLEELHEVLEDHAQNKSDNKMIISGIWTHFGYADEFDVPEYDIERQAWLNVL 178 Query: 183 RTLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKIN-KSHPMQTVVT 237 TL+ + A +S H R GI+LYG K +Q +T Sbjct: 179 NTLLDEGYSFDLIHAQNSASFYREGQVVLPHHTHARVGIALYGSRPYSKLKESEIQQSLT 238 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + +I +R+ AG+ Y + T++ +AV IGY DG + Sbjct: 239 VKGNVIQVREVNAGDYCGYSFAYEATKNQTQLAVVDIGYGDGILKS------------RA 286 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDV 346 + I G PI + M ++ D + + D + ++ DI++D+ Sbjct: 287 QHEAIINGKRYPIR-ALMMSHMFVEVDDEVHAQ--DEVVLYNNDIRIDEF 333 >gi|19703826|ref|NP_603388.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713976|gb|AAL94687.1| Alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 359 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 64/378 (16%), Positives = 133/378 (35%), Gaps = 33/378 (8%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKNALYHNIEYLREY-KQKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57 Query: 61 FVTSVEEGVKLRLY-----TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 E + + Y + +++ + I ++ + Sbjct: 58 AAARFSEAITITEYMMNNFSINDFKILVFESLDDDYSFLEKYPQICP--TINSIKDLKNA 115 Query: 116 MSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 ++ + +L++D GF R G+ +E + + L L + + V Sbjct: 116 LANNIPIDRLSLKIDFGFGRNGIKTEEVDELKNLIKFNSLKFLGIFSHLFSSTYTDGLEV 175 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + L +++GI R G+ YG + H ++ Sbjct: 176 IRK-FTEVVNKLGKDNFEMVHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHDLKP 234 Query: 235 VVTAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 V T + +R + V+Y + IA IGY DG+P Sbjct: 235 VFTGLIGYVDSVRYVNELDYVAYEDLTSISPKTKKIAKIKIGYGDGFP------------ 282 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 IK ++ ++TMD T ++ D + VGD + ++ + +++ +G Sbjct: 283 KANNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTRTGL 336 Query: 353 TNYDLLVRIGT-RYAKFY 369 + + L+ + R + + Sbjct: 337 SMLEALIALSPLRVKRIF 354 >gi|323464498|gb|ADX76651.1| alanine racemase 2 [Staphylococcus pseudintermedius ED99] Length = 359 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 135/341 (39%), Gaps = 35/341 (10%) Query: 20 WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79 ++ ++ N AVVK+NAY G + AG+ F TS+ E V++R P+A Sbjct: 13 LQNVKQVTQNQSVMAVVKNNAYNYGLDFAVQMFQQAGIDTFSTTSLVEAVRIRELAPEAT 72 Query: 80 IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSL 139 IF+ ++ E N I + ++P LTFY + + L+ + +R G Sbjct: 73 IFL---MNATDEFERLRANDIHM--TLPSLTFYRENKAALAGVKVHLEYENLLHRSGFKT 127 Query: 140 QEALDFT---HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS------HYK 190 ++ L H +++ + +H AD+ ++ + E + T++ Y Sbjct: 128 KDELLAVLADHEQNPAPKMEITGLWTHFGYADEFDVDMHEKEREAWLTIVETLVKQRGYH 187 Query: 191 GIEASLASSSGILLGPNYHFQLT---RPGISLYGGTDKINKSHPMQTV-VTAEARIILIR 246 +S+ F R GI+LYG + S T +T +A +I +R Sbjct: 188 FDLIHAQNSASYYREGQRVFDHHTHARIGIALYGSRPYASLSPGCITQALTVKANVIQVR 247 Query: 247 KALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 G+ Y + + +AV +GY DG T I G Sbjct: 248 NVQQGDHCGYSFAYTVEQPHTRLAVVDVGYGDGILRT------------RAQHDVSINGK 295 Query: 306 MVPILGKITMDMTMFDITDSLSIEVGDYIQIF-GPDIKLDD 345 PI + M ++ D++S + D + ++ D+++DD Sbjct: 296 RYPIR-ALMMSHMFVEVDDTVSAK--DSVILYNNSDLRIDD 333 >gi|239943636|ref|ZP_04695573.1| putative alanine racemase [Streptomyces roseosporus NRRL 15998] Length = 92 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 33/84 (39%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 R +IDL AL+ N + + A+ AVVK + YG G A A AG + Sbjct: 8 RARAEIDLAALRANVRVLRERAAGAQLMAVVKSDGYGHGAVPCARAARAAGATWLGTATP 67 Query: 66 EEGVKLRLYTPQARIFVLYGIHPG 89 E + LR RI G Sbjct: 68 HEALALRAAGLDGRILCWLWTPGG 91 >gi|296328819|ref|ZP_06871332.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154050|gb|EFG94855.1| alanine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 359 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 131/376 (34%), Gaps = 29/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKNALYHNIEYLREY-KQKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57 Query: 61 FVTSVEEGVKLRL---YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 E + + F + + F + ++ + ++ Sbjct: 58 AAARFSEAITITEYMMNNFSINDFKILVFESLDDYYSFLEKYPQICPTINSIKDLKNALA 117 Query: 118 CGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +L++D GF R G+ +E + + L L + + V Sbjct: 118 NNIPIDRLSLKIDFGFGRNGIKAEEVDELKNLIKFNSLKFLGIFSHLFSSTYTDGLEVIR 177 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + L +++GI R G+ YG + H ++ V Sbjct: 178 K-FTEVVNKLGKDNFEMVHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVF 236 Query: 237 TAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 T + +R + V+Y + IA IGY DG+P Sbjct: 237 TGLIGYVDSVRYVNELDYVAYEDLTSISPKTKKIAKIKIGYGDGFP------------KA 284 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 IK ++ ++TMD T ++ D + VGD + ++ + +++ +G + Sbjct: 285 NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTKTGLSM 338 Query: 355 YDLLVRIGT-RYAKFY 369 + L+ + R + + Sbjct: 339 LEALIALSPLRVKRIF 354 >gi|256844858|ref|ZP_05550316.1| alanine racemase [Fusobacterium sp. 3_1_36A2] gi|256718417|gb|EEU31972.1| alanine racemase [Fusobacterium sp. 3_1_36A2] Length = 359 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 63/376 (16%), Positives = 131/376 (34%), Gaps = 29/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKNALYHNIEYLREY-KQKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLY---GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 E + + Y + + F + ++ + ++ Sbjct: 58 ATARFSEAITITEYMINNFSINDFKILVFESLDDDYSFLEKYPQICPTINSIKDLKNALA 117 Query: 118 CGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +L++D GF R G+ +E + + L L + + V Sbjct: 118 NNIPIDRLSLKIDFGFGRNGIKAEEVDELKNLIKFNSLKFLGIFSHLFSATYTDGLEVIR 177 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + L +++GI R G+ YG + H ++ V Sbjct: 178 K-FTEVVNKLGKDNFEMIHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVF 236 Query: 237 TAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 T ++ +R + V+Y + IA IGY DG+ Sbjct: 237 TGLIGYVVSVRYVNELDYVAYEDLSSINPKTKKIAKIKIGYGDGFL------------KA 284 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 IK ++ ++TMD T ++ D + VGD + ++ + +++ +G + Sbjct: 285 NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTRTGLSM 338 Query: 355 YDLLVRIGT-RYAKFY 369 + L+ + R + + Sbjct: 339 LEALIALSPLRVKRIF 354 >gi|237741523|ref|ZP_04572004.1| alanine racemase [Fusobacterium sp. 4_1_13] gi|229429171|gb|EEO39383.1| alanine racemase [Fusobacterium sp. 4_1_13] Length = 359 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 131/376 (34%), Gaps = 29/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKNALYHNIEYLREY-KQKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLY---GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 E + + Y + + F + ++ + ++ Sbjct: 58 ATARFSEAITITEYMINNFSINDFKILVFESLDDDYSFLEKYPQICPTINSIKDLKNALA 117 Query: 118 CGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +L++D GF R G+ +E + + L L + + V Sbjct: 118 NNIPIDRLSLKIDFGFGRNGIKAEEVDELKNLIKFNSLKFLGIFSHLFSATYTDGLEVIR 177 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + L +++GI R G+ YG + H ++ V Sbjct: 178 K-FTEVVNKLGKDNFEMIHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVF 236 Query: 237 TAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 T ++ +R + V+Y + IA IGY DG+ Sbjct: 237 TGLIGYVVSVRYVNELDYVAYEDLSSINPKTKKIAKIKIGYGDGFL------------KA 284 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 IK ++ ++TMD T ++ D + VGD + ++ K +++ +G + Sbjct: 285 NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HKPNEMKTRTGLSM 338 Query: 355 YDLLVRIGT-RYAKFY 369 + L+ + R + + Sbjct: 339 LEALIALSPLRVKRIF 354 >gi|294785861|ref|ZP_06751149.1| alanine racemase [Fusobacterium sp. 3_1_27] gi|294487575|gb|EFG34937.1| alanine racemase [Fusobacterium sp. 3_1_27] Length = 359 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 132/376 (35%), Gaps = 29/376 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M+++ ++ L D AL +N + V+K NAYG IA ALY+ ++ + Sbjct: 1 MNTSFYVSL--DKNALYHNIEYLREY-KQKELLPVIKANAYGHNYLLIAKALYDFNIKTW 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLY---GIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 E + + Y + + F + ++ + ++ Sbjct: 58 ATARFSEAITITEYMINNFSINDFKILVFESLDDDYSFLEKYPQICPTINSIKDLKNALA 117 Query: 118 CGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +L++D GF R G+ +E + + L L + + V Sbjct: 118 NNIPIDRLSLKIDFGFGRNGIKAEEVDELKNLIKFNSLKFLGIFSHLFSATYTDGLEVIR 177 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 L + L +++GI R G+ YG + H ++ V Sbjct: 178 KFTGVVNKLGKDNFEM-IHLQNAAGIYNYNVEVVTHIRTGMLTYGLQEAGFYDHDLKPVF 236 Query: 237 TAE-ARIILIRKALAGELVSYGG-QKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 T ++ +R + V+Y + IA IGY DG+ Sbjct: 237 TGLIGYVVSVRYVNELDYVAYEDLSSINPKTKKIAKIKIGYGDGFL------------KA 284 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTN 354 IK ++ ++TMD T ++ D + VGD + ++ + +++ +G + Sbjct: 285 NNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDKVHLY---HRPNEMKTRTGLSM 338 Query: 355 YDLLVRIGT-RYAKFY 369 + L+ + R + + Sbjct: 339 LEALIALSPLRVKRIF 354 >gi|16417160|gb|AAL18607.1|AF384669_1 alanine racemase [Francisella novicida] Length = 210 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 161 ISHLACADDPSSHVNSVQLERFRTLISHYKG----IEASLASSSGILLGPNYHFQLTRPG 216 SHLACAD+ N Q RF +++ KG I L++S G L + + RPG Sbjct: 16 YSHLACADNRDHPTNIKQKNRFDSIVEFTKGLSQDIICHLSNSYGFLGQKGICYDMVRPG 75 Query: 217 ISLYGGTDKINKSHPMQ---TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAI 273 I YG + ++ + ++++ I GE V Y + +AV I Sbjct: 76 ILSYGFLPEFYVDRVIREIKPIARLLSKVVKIITLQEGEGVGYSLIYRGFEGEQLAVIPI 135 Query: 274 GYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDIT-DSLSIEVGD 332 GY DG+P L G I M P+ G+++MD + + ++V D Sbjct: 136 GYGDGFPRELGDR-----------GFVNINDVMYPMAGRMSMDGLTVSLGINEYDVKVSD 184 Query: 333 YIQIFGPDI----KLDDVALASGTT 353 +++ +A + T Sbjct: 185 TVELISAIPRNRNSAFSIANQTNTI 209 >gi|82750990|ref|YP_416731.1| alanine racemase [Staphylococcus aureus RF122] gi|82656521|emb|CAI80943.1| probable alanine racemase [Staphylococcus aureus RF122] Length = 361 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 138/348 (39%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + + + ++ + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHQNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y ++T+D+ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKDNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|323441183|gb|EGA98890.1| alanine racemase [Staphylococcus aureus O11] Length = 363 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 68/350 (19%), Positives = 134/350 (38%), Gaps = 38/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 I+ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 INKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + + + ++ + +H AD+ +++ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHQNQNAKMIISGLWTHFGYADEFDVSDYNIERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKSHPMQTVV--- 236 + A +S H R GI+LYG + + +V Sbjct: 179 ALLTEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHQHDIVQSL 238 Query: 237 TAEARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 T +A +I +R+ AG+ Y + ++ +AV IGY DG T Sbjct: 239 TVKAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------R 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 AKHEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 333 >gi|50954714|ref|YP_062002.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951196|gb|AAT88897.1| alanine racemase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 236 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 16/148 (10%) Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 ++ HP + + I+ +++ A VSYG + R S + + A+GYADG S Sbjct: 100 LDPRHPSRLALRLVGEIVAVKRVAARRGVSYGYTYRTERPSTLVLVALGYADGLLRVASN 159 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DI 341 G + + G+I MD + DI D+ ++ GD + +FG + Sbjct: 160 R-----------GPVQVGTVRGRVSGRIAMDQFVVDIGDADTL-PGDPVVVFGDPGRGEP 207 Query: 342 KLDDVALASGTTNYDLLVRIGTRYAKFY 369 + D A A G + R+G R + Y Sbjct: 208 TVLDWADALGVAAPVITSRLGRRIERRY 235 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 12/88 (13%) Query: 1 MHSNEFLR--LKIDLTALKNNW----HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN 54 M +R IDL A+ N + + + R +AYG G +A L + Sbjct: 1 MTPAPGVRRHAHIDLDAIVANAISSGRPLTDSTADLRV------DAYGHGLIPVARVLSS 54 Query: 55 AGVQDFFVTSVEEGVKLRLYTPQARIFV 82 AG F V+ VE+ L RI V Sbjct: 55 AGTGGFLVSRVEDAATLADDGVPGRILV 82 >gi|302333011|gb|ADL23204.1| alanine racemase family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 361 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 134/348 (38%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E +K Sbjct: 7 VNKKIFLQNAIAVKN---NQPIMAVVKNNAYHYDLEFAVSQFIHAGIDTFSTTSLREAIK 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 VRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + + + ++ + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHQNQNAKMIISGLWTHFGYADEFDVPDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 TLLFEGYQFDLIHAQNSASFYREGQELLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I + + AG+ Y + ++ +AV IGY DG T Sbjct: 239 KANVIQVHEVQAGDYCGYSFAFEVTKTNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|329733446|gb|EGG69778.1| putative alanine racemase [Staphylococcus aureus subsp. aureus 21193] Length = 361 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 69/348 (19%), Positives = 138/348 (39%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + + + ++ + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHQNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 SLLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y ++T+++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|318081155|ref|ZP_07988487.1| hypothetical protein SSA3_31755 [Streptomyces sp. SA3_actF] Length = 67 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R +IDL AL+ N + + A AVVK +AYG G A A AG V + Sbjct: 8 PRAEIDLAALRANVRLLRERAPGAAFMAVVKADAYGHGALACARAAREAGASWLGVATPA 67 >gi|57651899|ref|YP_186286.1| alanine racemase family protein [Staphylococcus aureus subsp. aureus COL] gi|87161172|ref|YP_493989.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195126|ref|YP_499927.1| alanine racemase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221522|ref|YP_001332344.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509565|ref|YP_001575224.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140626|ref|ZP_03565119.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452194|ref|ZP_05700209.1| alanine racemase 2 [Staphylococcus aureus A5948] gi|262050354|ref|ZP_06023197.1| hypothetical protein SAD30_2197 [Staphylococcus aureus D30] gi|262053091|ref|ZP_06025262.1| hypothetical protein SA930_1088 [Staphylococcus aureus 930918-3] gi|282927786|ref|ZP_06335399.1| alanine racemase [Staphylococcus aureus A9765] gi|284024399|ref|ZP_06378797.1| alanine racemase [Staphylococcus aureus subsp. aureus 132] gi|294850734|ref|ZP_06791453.1| alanine racemase [Staphylococcus aureus A9754] gi|304381024|ref|ZP_07363679.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|20137472|sp|Q9EZ08|ALR2_STAA8 RecName: Full=Alanine racemase 2 gi|81694524|sp|Q5HG21|ALR2_STAAC RecName: Full=Alanine racemase 2 gi|57286085|gb|AAW38179.1| alanine racemase family protein [Staphylococcus aureus subsp. aureus COL] gi|87127146|gb|ABD21660.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202684|gb|ABD30494.1| alanine racemase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374322|dbj|BAF67582.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus str. Newman] gi|160368374|gb|ABX29345.1| alanine racemase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860131|gb|EEV82964.1| alanine racemase 2 [Staphylococcus aureus A5948] gi|259159014|gb|EEW44087.1| hypothetical protein SA930_1088 [Staphylococcus aureus 930918-3] gi|259161553|gb|EEW46152.1| hypothetical protein SAD30_2197 [Staphylococcus aureus D30] gi|269940894|emb|CBI49277.1| putative alanine racemase [Staphylococcus aureus subsp. aureus TW20] gi|282592040|gb|EFB97068.1| alanine racemase [Staphylococcus aureus A9765] gi|294822410|gb|EFG38860.1| alanine racemase [Staphylococcus aureus A9754] gi|302751228|gb|ADL65405.1| alanine racemase family protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340440|gb|EFM06379.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195911|gb|EFU26276.1| alanine racemase [Staphylococcus aureus subsp. aureus CGS01] gi|320140793|gb|EFW32642.1| putative alanine racemase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142185|gb|EFW34003.1| putative alanine racemase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314075|gb|AEB88488.1| Alanine racemase 2 [Staphylococcus aureus subsp. aureus T0131] gi|329725317|gb|EGG61801.1| putative alanine racemase [Staphylococcus aureus subsp. aureus 21189] Length = 361 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 138/348 (39%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + H+ +S + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTL 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y ++T+++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|253732036|ref|ZP_04866201.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724227|gb|EES92956.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 361 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 135/348 (38%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + H+ +S + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y + ++ +AV IGY DG T Sbjct: 239 KAHVIQVREVHAGDYCGYSFAFEVTKNNTKLAVIDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|15924389|ref|NP_371923.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Mu50] gi|15926979|ref|NP_374512.1| hypothetical protein SA1231 [Staphylococcus aureus subsp. aureus N315] gi|148267887|ref|YP_001246830.1| alanine racemase [Staphylococcus aureus subsp. aureus JH9] gi|150393950|ref|YP_001316625.1| alanine racemase [Staphylococcus aureus subsp. aureus JH1] gi|156979718|ref|YP_001441977.1| hypothetical protein SAHV_1387 [Staphylococcus aureus subsp. aureus Mu3] gi|253315276|ref|ZP_04838489.1| hypothetical protein SauraC_03777 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733354|ref|ZP_04867519.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH130] gi|255006188|ref|ZP_05144789.2| hypothetical protein SauraM_06955 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795546|ref|ZP_05644525.1| alanine racemase [Staphylococcus aureus A9781] gi|258413354|ref|ZP_05681630.1| alanine racemase [Staphylococcus aureus A9763] gi|258420539|ref|ZP_05683481.1| alanine racemase [Staphylococcus aureus A9719] gi|258434689|ref|ZP_05688763.1| alanine racemase 2 [Staphylococcus aureus A9299] gi|258444735|ref|ZP_05693064.1| alanine racemase 2 [Staphylococcus aureus A8115] gi|258447430|ref|ZP_05695574.1| alanine racemase [Staphylococcus aureus A6300] gi|258449271|ref|ZP_05697374.1| alanine racemase 2 [Staphylococcus aureus A6224] gi|258454651|ref|ZP_05702615.1| alanine racemase 2 [Staphylococcus aureus A5937] gi|269203021|ref|YP_003282290.1| alanine racemase family protein [Staphylococcus aureus subsp. aureus ED98] gi|282892892|ref|ZP_06301127.1| alanine racemase 2 [Staphylococcus aureus A8117] gi|282929363|ref|ZP_06336928.1| diaminopimelate epimerase [Staphylococcus aureus A10102] gi|295406346|ref|ZP_06816153.1| alanine racemase [Staphylococcus aureus A8819] gi|296275259|ref|ZP_06857766.1| alanine racemase [Staphylococcus aureus subsp. aureus MR1] gi|297244575|ref|ZP_06928458.1| diaminopimelate epimerase alternative form [Staphylococcus aureus A8796] gi|54036716|sp|P63483|ALR2_STAAN RecName: Full=Alanine racemase 2 gi|54040681|sp|P63482|ALR2_STAAM RecName: Full=Alanine racemase 2 gi|13701196|dbj|BAB42491.1| SA1231 [Staphylococcus aureus subsp. aureus N315] gi|14247170|dbj|BAB57561.1| Alanine racemase 2 [Staphylococcus aureus subsp. aureus Mu50] gi|147740956|gb|ABQ49254.1| Alanine racemase [Staphylococcus aureus subsp. aureus JH9] gi|149946402|gb|ABR52338.1| Alanine racemase [Staphylococcus aureus subsp. aureus JH1] gi|156721853|dbj|BAF78270.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253728622|gb|EES97351.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH130] gi|257789518|gb|EEV27858.1| alanine racemase [Staphylococcus aureus A9781] gi|257839918|gb|EEV64386.1| alanine racemase [Staphylococcus aureus A9763] gi|257843487|gb|EEV67894.1| alanine racemase [Staphylococcus aureus A9719] gi|257849050|gb|EEV73032.1| alanine racemase 2 [Staphylococcus aureus A9299] gi|257850228|gb|EEV74181.1| alanine racemase 2 [Staphylococcus aureus A8115] gi|257853621|gb|EEV76580.1| alanine racemase [Staphylococcus aureus A6300] gi|257857259|gb|EEV80157.1| alanine racemase 2 [Staphylococcus aureus A6224] gi|257863034|gb|EEV85798.1| alanine racemase 2 [Staphylococcus aureus A5937] gi|262075311|gb|ACY11284.1| alanine racemase family protein [Staphylococcus aureus subsp. aureus ED98] gi|282589063|gb|EFB94165.1| diaminopimelate epimerase [Staphylococcus aureus A10102] gi|282764889|gb|EFC05014.1| alanine racemase 2 [Staphylococcus aureus A8117] gi|285817077|gb|ADC37564.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981] gi|294968934|gb|EFG44956.1| alanine racemase [Staphylococcus aureus A8819] gi|297178605|gb|EFH37851.1| diaminopimelate epimerase alternative form [Staphylococcus aureus A8796] gi|312829794|emb|CBX34636.1| alanine racemase, C-terminal domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131207|gb|EFT87191.1| hypothetical protein CGSSa03_06679 [Staphylococcus aureus subsp. aureus CGS03] gi|329727451|gb|EGG63907.1| putative alanine racemase [Staphylococcus aureus subsp. aureus 21172] Length = 361 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 135/348 (38%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + H+ +S + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y + ++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|323444052|gb|EGB01663.1| alanine racemase [Staphylococcus aureus O46] Length = 363 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 138/350 (39%), Gaps = 38/350 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ + ++ + + + S+ + ++ L+ + Sbjct: 64 IRQLAPDATIFLMNAVY--EFDLVLEHQIHMTLPSLTYYYNHKNDLA---GIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + + + ++ + +H AD+ +++ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHQNQNAKMIISGLWTHFGYADEFDVSDYNIERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKSHPMQTVV--- 236 + A +S H R GI+LYG + + +V Sbjct: 179 ALLTEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHQHDIVQSL 238 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 T +A +I +R+ AG+ Y ++T+++ +AV IGY DG T Sbjct: 239 TVKAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------R 286 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 AKHEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 333 >gi|49483589|ref|YP_040813.1| alanine racemase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425463|ref|ZP_05601888.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428123|ref|ZP_05604521.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257430754|ref|ZP_05607136.1| alanine racemase [Staphylococcus aureus subsp. aureus 68-397] gi|257433514|ref|ZP_05609872.1| alanine racemase [Staphylococcus aureus subsp. aureus E1410] gi|257436355|ref|ZP_05612402.1| alanine racemase [Staphylococcus aureus subsp. aureus M876] gi|282903979|ref|ZP_06311867.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C160] gi|282905744|ref|ZP_06313599.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282908715|ref|ZP_06316533.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910979|ref|ZP_06318781.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914187|ref|ZP_06321974.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M899] gi|282919109|ref|ZP_06326844.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C427] gi|282924292|ref|ZP_06331966.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C101] gi|283958161|ref|ZP_06375612.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|293501214|ref|ZP_06667065.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 58-424] gi|293510175|ref|ZP_06668883.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M809] gi|293526767|ref|ZP_06671452.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M1015] gi|295427912|ref|ZP_06820544.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591127|ref|ZP_06949765.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8] gi|49241718|emb|CAG40408.1| putative alanine racemase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271920|gb|EEV04058.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274964|gb|EEV06451.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257278882|gb|EEV09501.1| alanine racemase [Staphylococcus aureus subsp. aureus 68-397] gi|257281607|gb|EEV11744.1| alanine racemase [Staphylococcus aureus subsp. aureus E1410] gi|257284637|gb|EEV14757.1| alanine racemase [Staphylococcus aureus subsp. aureus M876] gi|282313679|gb|EFB44072.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C101] gi|282316919|gb|EFB47293.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C427] gi|282322255|gb|EFB52579.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M899] gi|282324674|gb|EFB54984.1| alanine racemase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326979|gb|EFB57274.1| alanine racemase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331036|gb|EFB60550.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282595597|gb|EFC00561.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus C160] gi|283790310|gb|EFC29127.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|290920839|gb|EFD97902.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M1015] gi|291096219|gb|EFE26480.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus 58-424] gi|291467119|gb|EFF09637.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus M809] gi|295128270|gb|EFG57904.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576013|gb|EFH94729.1| alanine racemase [Staphylococcus aureus subsp. aureus MN8] gi|312438201|gb|ADQ77272.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus TCH60] gi|315195291|gb|EFU25678.1| putative alanine racemase [Staphylococcus aureus subsp. aureus CGS00] Length = 361 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 135/348 (38%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + H+ +S + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHEIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y + ++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|21283016|ref|NP_646104.1| hypothetical protein MW1287 [Staphylococcus aureus subsp. aureus MW2] gi|49486240|ref|YP_043461.1| putative alanine racemase [Staphylococcus aureus subsp. aureus MSSA476] gi|297207946|ref|ZP_06924378.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912030|ref|ZP_07129473.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70] gi|21204455|dbj|BAB95152.1| MW1287 [Staphylococcus aureus subsp. aureus MW2] gi|49244683|emb|CAG43116.1| putative alanine racemase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887414|gb|EFH26315.1| alanine racemase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886276|gb|EFK81478.1| alanine racemase [Staphylococcus aureus subsp. aureus TCH70] Length = 361 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 135/348 (38%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLVPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + H+ +S + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y + ++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|283470613|emb|CAQ49824.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus ST398] Length = 361 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 138/348 (39%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLSGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + H+ +S + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 SLLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHAIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y ++T+++ +AV IGY DG T Sbjct: 239 KANVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|258423662|ref|ZP_05686550.1| alanine racemase 2 [Staphylococcus aureus A9635] gi|257846160|gb|EEV70186.1| alanine racemase 2 [Staphylococcus aureus A9635] Length = 361 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 137/348 (39%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAPDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFT--HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF----R 183 +R G L E + H+ +S + +H AD+ +V+ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHHNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMDIVE 178 Query: 184 TLISHYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 L+S + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ AG+ Y + ++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQAGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ D++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDDNVHAQ--DDVILYNNDIRIDE 331 >gi|325846634|ref|ZP_08169549.1| alanine racemase, N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481392|gb|EGC84433.1| alanine racemase, N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 141 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 6/145 (4%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N L +DL + NN + S N++ AV+K + YGLG +IA + + + Sbjct: 1 MQENYLL---VDLDKILNNIKLIKEKSINSKICAVLKADGYGLGALEIAKYINDQ-IDYI 56 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 V +E LR I +L + + K N+ I + ++ ++ Sbjct: 57 AVAQFKEAKYLRDNGIDKPILILGYLPLDKYKECSSLNIDVGIYDLDYARKINESITG-- 114 Query: 121 SHPYALQVDTGFNRLGLSLQEALDF 145 S + +DTG RLG E Sbjct: 115 SINCHILLDTGHTRLGFRDFEIEKI 139 >gi|282916665|ref|ZP_06324423.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus D139] gi|282319152|gb|EFB49504.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus D139] Length = 361 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 136/348 (39%), Gaps = 36/348 (10%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ N ++ N AVVK+NAY E +AG+ F TS+ E ++ Sbjct: 7 VNKKIFLQNAITVKN---NQPLMAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQ 63 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R A IF++ ++ ++ ++P LT+Y + L+ + Sbjct: 64 IRQLAQDATIFLMNAVYEFDLVREHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFEN 118 Query: 131 GFNRLGL-SLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS 187 +R G L E + + + ++ + +H AD+ +V+ ++ ++ Sbjct: 119 LLHRSGFKDLNEIKEVLKDHHQNQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVE 178 Query: 188 ----HYKGIEASLASSSGILLGPN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTA 238 + A +S H R GI+LYG + + H + +T Sbjct: 179 ALLSEGYQFDLIHAQNSASFYREGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTV 238 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 +A +I +R+ G+ Y ++T+++ +AV IGY DG T Sbjct: 239 KAHVIQVREVQVGDYCGYSFAFEVTKNNTKLAVVDIGYGDGILRT------------RAK 286 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + I G PI + M ++ ++ + D + ++ DI++D+ Sbjct: 287 HEALINGKRYPIR-ALMMSHMFVEVDGNVHAQ--DEVILYNNDIRIDE 331 >gi|213859640|ref|ZP_03385344.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 125 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++EE + LR + I +L G Q+ +DT + + Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHSNWQLKALQNARLNAPLD 119 Query: 124 YALQVD 129 ++V+ Sbjct: 120 IYVKVN 125 >gi|1373382|gb|AAB17466.1| alanine racemase [Treponema pallidum] Length = 178 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 7/166 (4%) Query: 30 ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89 AR VK +AYG G +A A + GV F V V+E +LR +A I L Sbjct: 6 ARVCLPVKADAYGHGACDVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILCLSTPTAE 65 Query: 90 QEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145 + + + + VIS + + + G + +++DTG R+G + EA Sbjct: 66 EISSLIEHRVHTVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACAL 125 Query: 146 THNSFNKKLGQLSLIISHLACADDPSSH---VNSVQLERFRTLISH 188 L + +H + AD + +Q F + + Sbjct: 126 VQMVCATPGLHLEGVCTHFSVADSVRAEDLQYTEMQRAHFMHCVQY 171 >gi|28493463|ref|NP_787624.1| alanine racemase [Tropheryma whipplei str. Twist] gi|28572425|ref|NP_789205.1| alanine racemase I [Tropheryma whipplei TW08/27] gi|28410556|emb|CAD66942.1| alanine racemase I [Tropheryma whipplei TW08/27] gi|28476504|gb|AAO44593.1| alanine racemase [Tropheryma whipplei str. Twist] Length = 386 Score = 99.4 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 73/397 (18%), Positives = 133/397 (33%), Gaps = 64/397 (16%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 SN + I L LK N + A+ V+K NA G G ++A +G+++F V Sbjct: 8 SNSHAQAFISLGTLKKNLLWLQNEVAPAKVFMVIKANANGHGTMRVAEVAKMSGIRNFAV 67 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHP--GQEKIIFDTNLIPVISSVPQLTFYSKLMSC-- 118 +E + ++ + I P + + N+ I + QL + + + Sbjct: 68 LLPKEALLIKRALSPGVRVFTWHITPDCEDLPSLIENNIEIGIGAEWQLRYIASCVKKTM 127 Query: 119 -------GVSHPYALQVDTGFNRLGLSLQEALDFTH-------NSFNKKLGQLSLIISHL 164 L++DTG +R G +++ + K G S + + Sbjct: 128 TCEVLSGYKPALIHLKLDTGLSRGGCGVKDWQNLVCLAQDFQEMGLIKITGFWSHLSNTS 187 Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 D S + + + + S +A+S L P R G+S +G + Sbjct: 188 PEEDRRSLKIFTENVTPYLASYSRRARPIMHIAASVAALGLPESRLDYVRLGLSCFGYYE 247 Query: 225 KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLS 284 K V+T A II + A+ A G+ADG L+ Sbjct: 248 KEELK----GVMTLVAPIIKFLP-----------------EQGRAIIACGFADGIS-PLA 285 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD-----ITDSLSIEVGDY------ 333 ++ + G ++ +I D D + +S D Sbjct: 286 VRNNVPLTGRSNRARLIEVGPETSVI-EICQD---IDRRQDNLQNSYDHVPQDPFLNALR 341 Query: 334 -----IQIFG----PDIKLDDVALASGTTNYDLLVRI 361 + +FG ++ A + GTT D+L R+ Sbjct: 342 VSQNHVILFGSGGLSELTARQWAESCGTTIDDVLSRV 378 >gi|329767985|ref|ZP_08259496.1| hypothetical protein HMPREF0428_01193 [Gemella haemolysans M341] gi|328838470|gb|EGF88078.1| hypothetical protein HMPREF0428_01193 [Gemella haemolysans M341] Length = 357 Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 69/358 (19%), Positives = 119/358 (33%), Gaps = 33/358 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++++ ++ N ++ S + AVVK+NAY L + G+ F T Sbjct: 1 MATIELNYNNIRQNAINLKERSQD--IIAVVKNNAYNLNLRECVKLYSEVGINYFATTKE 58 Query: 66 EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EE +R A IF+L + ++ + ++ L + + + Sbjct: 59 EECKVIRETLGEDANIFLLNPTYNFDLVREYNVEI-----NIASLEYLKENLENVRDLTL 113 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ---LER 181 L+ R G E + N + +L SH + AD+ + L+ Sbjct: 114 QLEFAGSMRRAGARNLEEVLEIINFCKENTLKLKGFWSHFSFADEFDGFYEKEKELVLKV 173 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRP-GISLYGGTDKINKSHP-------MQ 233 H+ L +S+ L + + GI LYG K +P ++ Sbjct: 174 LDEAQKHHDFEVIHLQNSASFLRDGVFEKTTHQRLGIILYGAMPYNVKENPVALKDLIIK 233 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T II I GE + Y + V IGY DG Sbjct: 234 NPITVYGEIINIVTLNKGECIGYSNSYIADAKKKVGVVNIGYGDGILR-----------D 282 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G I G I + M + +I + S +GD + I+ +L D G Sbjct: 283 RLKGQTCIINGKERNIYSTM-MSHLVVEIGEEES--IGDRVYIYDDKQQLHDYTKYFG 337 >gi|11991216|gb|AAG42250.1|AF306669_7 alanine racemase [Staphylococcus aureus] Length = 336 Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 129/326 (39%), Gaps = 33/326 (10%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 AVVK+NAY E +AG+ F TS+ E +++R P A IF++ ++ Sbjct: 1 MAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAVYEFDLV 60 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFT--HNS 149 ++ ++P LT+Y + L+ + +R G L E + H+ Sbjct: 61 REHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDHHH 115 Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLG 205 +S + +H AD+ +V+ ++ ++ + A +S Sbjct: 116 NQNAKMIISGLWTHFGYADEFDVSDYNVERSQWMEIVEALLSEGYQFDLIHAQNSASFYR 175 Query: 206 PN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGELVSYGGQK 260 H R GI+LYG + + H + +T +A +I +R+ AG+ Y Sbjct: 176 EGQILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTLKAHVIQVREVQAGDYCGYSFAF 235 Query: 261 K-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 + ++ +AV IGY DG T + I G PI + M Sbjct: 236 EVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYPIR-ALMMSHMF 282 Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDD 345 ++ ++ + D + ++ DI++D+ Sbjct: 283 VEVDGNVHAQ--DEVILYNNDIRIDE 306 >gi|298694693|gb|ADI97915.1| probable alanine racemase [Staphylococcus aureus subsp. aureus ED133] Length = 336 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 129/326 (39%), Gaps = 33/326 (10%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEK 92 AVVK+NAY E +AG+ F TS+ E +++R P A IF++ ++ Sbjct: 1 MAVVKNNAYHYDLEFAVTQFIHAGIDTFSTTSLREAIQIRQLAPNATIFLMNAVYEFDLV 60 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL-SLQEALDFTHNSFN 151 ++ ++P LT+Y + L+ + +R G L E + + Sbjct: 61 REHQIHM-----TLPSLTYYYNHKNDLAGIHVHLEFENLLHRSGFKDLNEIKEVLKDHHQ 115 Query: 152 KKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLG 205 + ++ + +H AD+ +++ ++ ++ + A +S Sbjct: 116 NQNAKMIISGLWTHFGYADEFDVSDYNIERSQWMEIVEALLSEGYQFDLIHAQNSASFYR 175 Query: 206 PN----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGELVSYGGQK 260 H R GI+LYG + + H + +T +A +I +R+ AG+ Y Sbjct: 176 EGQILLPHHTHARVGIALYGSRPYSSLNQHEIVQSLTVKAHVIQVREVQAGDYCGYSFAF 235 Query: 261 K-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 + ++ +AV IGY DG T + I G PI + M Sbjct: 236 EVTKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYPIR-ALMMSHMF 282 Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDD 345 ++ ++ + D + ++ DI++D+ Sbjct: 283 VEVDGNVHAQ--DEVILYNNDIRIDE 306 >gi|241888732|ref|ZP_04776039.1| alanine racemase 2 [Gemella haemolysans ATCC 10379] gi|241864755|gb|EER69130.1| alanine racemase 2 [Gemella haemolysans ATCC 10379] Length = 357 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 64/358 (17%), Positives = 118/358 (32%), Gaps = 33/358 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ++++ ++ N ++ + + AVVK+NAY L + G+ F T Sbjct: 1 MATIELNYNNIRQNAINLKEQAQD--IIAVVKNNAYNLDLRECVKLYSEVGINYFATTKE 58 Query: 66 EEGVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 EE +R +A IF+L + + ++ L + + + Sbjct: 59 EECKVIRETLGKEANIFLLNPTYD-----FALAREYNIEINIASLEYLKENIEKLKDLTL 113 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ---LER 181 L+ R G E + + +L SH + AD+ + L Sbjct: 114 QLEFAGSMRRAGAKNLEEVLEIIAFCKENDLKLKGFWSHFSFADEFDGFYEKEKELVLNV 173 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRP-GISLYGGTDKIN-------KSHPMQ 233 + +Y L +S+ L + + GI LYG ++ ++ Sbjct: 174 LDEALKNYDFEVVHLQNSASFLRDGVFEKTTHQRLGIILYGAMPYDVNVNLVALENLVIK 233 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 +T II I K GE + Y D + + IGY DG Sbjct: 234 NPITVYGEIINIVKLNKGECIGYSNSYIADVDKKVGIVNIGYGDGILR-----------D 282 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASG 351 G I G I + M + +I + ++GD + ++ +L D G Sbjct: 283 RLKGKTCIINGKNRNIYSTM-MSHLVVEIGEEE--QIGDRVYVYDDKQQLHDYTKYFG 337 >gi|325128702|gb|EGC51567.1| alanine racemase, catabolic [Neisseria meningitidis N1568] Length = 89 Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%) Query: 271 AAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEV 330 A GYADGYP + G + ++G+++MDM ++ D+ + Sbjct: 2 IACGYADGYPRRA-----------PSNSPVAVDGKLTRVIGRVSMDMMTIEL-DASQEGL 49 Query: 331 GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G ++++G + ++ VA A+GT Y+L+ I Sbjct: 50 GHEVELWGDTVNINTVAEAAGTIPYELMCNIKR 82 >gi|148999066|ref|ZP_01826497.1| alanine racemase [Streptococcus pneumoniae SP11-BS70] gi|147755105|gb|EDK62161.1| alanine racemase [Streptococcus pneumoniae SP11-BS70] Length = 70 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 303 KGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLL 358 G PI+G+++MD + + G + + G +I VA T NY+++ Sbjct: 1 DGQACPIVGRVSMDQITIRLPKLYPL--GTKVTLIGSNGDKEITATQVATYRVTINYEVV 58 Query: 359 VRIGTRYAKFY 369 + R + Y Sbjct: 59 CLLSDRIPREY 69 >gi|309802733|ref|ZP_07696837.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022] gi|308220797|gb|EFO77105.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022] Length = 105 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Query: 305 YMVPILGKITMDMTMFDIT---DSLSIEVGDYIQIFGP-------DIKLDDVALASGTTN 354 + + G++ MD + D+ D+L I GD +++FGP + DD A+ T + Sbjct: 10 RLYRVSGRVCMDQFILDLHGSADALGIHEGDTVELFGPGRGEDYAEPTADDWGRAADTIS 69 Query: 355 YDLLVRIGTRYAKFY 369 Y++ + R + Y Sbjct: 70 YEIFTCLRNRIPRLY 84 >gi|293395856|ref|ZP_06640138.1| alanine racemase [Serratia odorifera DSM 4582] gi|291421793|gb|EFE95040.1| alanine racemase [Serratia odorifera DSM 4582] Length = 89 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + + L A NN + + A+ +VVK NAYG G +++ +L A F + Sbjct: 3 RPISATLHLAAFDNNLQVIRRFAPTAKIWSVVKANAYGHGIDRVWQSL--ANTDGFALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGI 86 + E V LR Q I +L G Sbjct: 61 LAEAVMLRDAGWQGPILLLEGF 82 >gi|226320650|ref|ZP_03796208.1| alanine racemase [Borrelia burgdorferi 29805] gi|226233866|gb|EEH32589.1| alanine racemase [Borrelia burgdorferi 29805] Length = 287 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 9/216 (4%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 + G A +K +AYG G I L + + F ++++E+ L+ +I + Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLKSKNINYFGLSNIEDAKTLKKIDKNIKILM 86 Query: 83 LYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSHPYALQVDTGFNRLGLSLQE 141 + + K + L+P +S L K L++D G NR G+ + + Sbjct: 87 YIKVDKKEIKNLIKFELVPFVSDFEYLFLIEKECALQKNKIKVHLKIDIGMNRYGIKIDD 146 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASL 196 AL+ N K +L I SHL ++ Q+E+F + + + Sbjct: 147 ALEIATYIQNSKFLELEGICSHLPSIENF--KTTQKQIEQFLFFLETLKQKNIHPKFVHI 204 Query: 197 ASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHP 231 ++S I+ N F + RPG+ LYG + P Sbjct: 205 SNSGHIINYKLNPQFNMVRPGLILYGYCQSLKNKKP 240 >gi|325526100|gb|EGD03760.1| alanine racemase [Burkholderia sp. TJI49] Length = 115 Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + I A+++N + + +R AV+K +AYG G E+I L + Sbjct: 3 RPIVAHIRPDAIRHNLDFIRRTAAQSRVWAVIKADAYGHGIERIYSGLAA--ADGIALLD 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIH-PGQEKIIFDTNLIPVISSVPQLTFY 112 + E V++R + +L GI P +++ L + QL Sbjct: 61 LAEAVRVRELGWDKPVLLLEGIFEPTDVELVERHRLTVSVHCDEQLDML 109 >gi|317471393|ref|ZP_07930747.1| serine/alanine racemase [Anaerostipes sp. 3_2_56FAA] gi|316901144|gb|EFV23104.1| serine/alanine racemase [Anaerostipes sp. 3_2_56FAA] Length = 72 Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%) Query: 28 GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIH 87 + + V+K + YG G +A AL GV F V +EEG+ LR Sbjct: 3 PDTKIMPVIKADGYGHGAVPVAKALNKIGVDGFAVAIIEEGIALRKQGITKTDPNSRIYF 62 >gi|219121969|ref|XP_002181328.1| alanine racemase [Phaeodactylum tricornutum CCAP 1055/1] gi|217407314|gb|EEC47251.1| alanine racemase [Phaeodactylum tricornutum CCAP 1055/1] Length = 710 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 100/302 (33%), Gaps = 63/302 (20%) Query: 118 CGVSHPYALQVDTGFNRLGLSLQ---------------EALDFTHNSFNKKLGQLSLIIS 162 + VD+G RLG + E L ++ + Sbjct: 421 TRKRLRWHALVDSGMGRLGFKTEPVKKEDALAGRRDTVEILQDMLDAEINGNAPIEFYGM 480 Query: 163 HLACADDP-SSHVNSVQLERFRTLISHYKGIEAS------------------LASSSGIL 203 A+ +S Q+ +F L+ + + S IL Sbjct: 481 CTHMAEATATSDFTKSQIAKFINLLKRVRSAGIYIPTVSTDNSAALLTTNLTHFNPSEIL 540 Query: 204 LGPNYHFQ-LTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262 + + R G ++YG ++ +Q V T A + + GE V Y Sbjct: 541 SQKDSDTRGFVRTGGAIYGQRPAFDE---LQAVSTLLASVRHVAILKQGESVGYDRAYIA 597 Query: 263 TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDI 322 + IA IG+ADGYP L GK I+G + P+ G + MDM M ++ Sbjct: 598 PYNVRIATLTIGFADGYPRELGNGV----------GKVQIRGSVFPVAGNVCMDMLMIEL 647 Query: 323 TDSLS------IEVGDYIQIFGPD--------IKLDDVALASGTTNYDLLVRIGT-RYAK 367 + + VGD ++GP ++L D+A TT L + R + Sbjct: 648 GPAEDTDIGSTVAVGDTAVLWGPLDENDDYGMVRLQDLATTLKTTQSALTCGLDKIRVLR 707 Query: 368 FY 369 + Sbjct: 708 QF 709 Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 10 KIDLTALKNNWHSMNALSGNAR--TAAVVKDNAYGLGCEKIAPALYN-AGVQDFFVTSVE 66 +I L+AL++N+ + + + R AVVK + YG G A L + G F V ++E Sbjct: 39 RIRLSALQHNFAFVESTAARQRCSVIAVVKADGYGHGAIATALHLADRCGADAFAVATLE 98 Query: 67 EGVKLRLYT 75 E + LR Sbjct: 99 EAISLRRAF 107 >gi|256027409|ref|ZP_05441243.1| alanine racemase, biosynthetic [Fusobacterium sp. D11] Length = 98 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 23/113 (20%) Query: 262 LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 + DS AV IGYADG LS GG I + I+G I MDMTM Sbjct: 1 MPADSTYAVLPIGYADGLKKYLS-----------KGGYVLINNHRCEIIGNICMDMTMIR 49 Query: 322 ITDSLS--IEVGDYIQIFGPDIKLDDVALASGTTN----YDLLVRIGTRYAKF 368 I + +++GD + + DI LD++ ++ + IG R + Sbjct: 50 IPKEIENSVKIGDEVTVINADI-LDNLN-----IPELCVWEFMTGIGKRVKRI 96 >gi|330813902|ref|YP_004358141.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063] gi|327486997|gb|AEA81402.1| alanine racemase [Candidatus Pelagibacter sp. IMCC9063] Length = 154 Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 3 SNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG-CEKIAPALYNAGVQDFF 61 + ++ I+LT++KNN+ + + +A VK ++YGLG KI +L ++FF Sbjct: 2 KHSSGQVSINLTSIKNNYLFLKRFCKPSVVSATVKASSYGLGEANKIVASLVKLKCKNFF 61 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 V +V+E +K+R IFVL G+ +E + F L PV+++ Q +++ + Sbjct: 62 VANVKEALKIRKKFKSINIFVLNGLGIKEESVFFKNKLTPVLNTYSQFEKWTRYLKKNYQ 121 Query: 122 HPYALQVDTGFNRLGLSL 139 + VDTG NRLG Sbjct: 122 RNIMIHVDTGMNRLGFQE 139 >gi|227432609|ref|ZP_03914587.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351645|gb|EEJ41893.1| alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 226 Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 23/233 (9%) Query: 146 THNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH--YKGIEASLASSSGIL 203 + + +H A AD P+ Q+ ++ L + E A++ Sbjct: 4 IQEVSAQDTLIFQSMWTHFATADTPNVDYVDFQISEWQRLTHDLPVEPNENHFANTGIAT 63 Query: 204 LGPN-YHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQ 259 P + + R GI L+G ++ + ++ +A+++ + G V YG + Sbjct: 64 WYPEKINTDIVRLGIGLFGINGSVPIMSMPFELIPALSLKAKVVNSKPLKKGNAVGYGAE 123 Query: 260 KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTM 319 D + IG++DGYP SG+ + + G + I+G + MD +M Sbjct: 124 YHAPNDGYLITIPIGHSDGYPFNGSGMRALVA-----------DGQIGHIVGGVAMDQSM 172 Query: 320 FDITDSLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +T+ + VG + + G I + D+A + ++ L+ R + Sbjct: 173 IFVTN--PVAVGTTVTLIGRVGDQSITMQDLAEHTQSSIVALMNDFAPRLQRI 223 >gi|323359912|ref|YP_004226308.1| alanine racemase [Microbacterium testaceum StLB037] gi|323276283|dbj|BAJ76428.1| alanine racemase [Microbacterium testaceum StLB037] Length = 211 Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 ++ R + + L GE VSYG + D+ +A+ GYA G +L + Sbjct: 84 LSLRGRALGTKALLRGEGVSYGYTHRAPHDTRVALVTGGYAQGVVRSLGNAVT------- 136 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP----DIKLDDVALASG 351 I G I+G++ MD+ + D+ D+ I G + FG L++ A+G Sbjct: 137 ----VAIDGRRHRIVGRVAMDVCVVDVGDA-DIARGAEVVFFGDPAEGHPSLEEWTDATG 191 Query: 352 TTNYDLLVRIGTRYAKF 368 + +++ +G R + Sbjct: 192 WSAAEIVAAVGVRAERR 208 >gi|260890258|ref|ZP_05901521.1| alanine racemase [Leptotrichia hofstadii F0254] gi|260859878|gb|EEX74378.1| alanine racemase [Leptotrichia hofstadii F0254] Length = 77 Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L+I+ LK N + +++ N V+KDNAYGLG E + P L F V +EE Sbjct: 5 LEINRENLKRNLEKIRSINKN--IVCVIKDNAYGLGIENVFPILLENNCNYFAVAYIEEA 62 Query: 69 VKLRLYTPQ 77 +K+R + Sbjct: 63 IKIRKILKK 71 >gi|330952100|gb|EGH52360.1| alanine racemase [Pseudomonas syringae Cit 7] Length = 58 Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R IDL AL++N+ SG + AVVK +AYG G ++A AL + F V Sbjct: 2 RPARAFIDLQALRHNYQLARENSGG-KALAVVKADAYGHGAVRVAQAL-ESQADGFAVA 58 >gi|289828986|ref|ZP_06546686.1| D-amino acid dehydrogenase-Alanine racemase fusion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 71 Score = 86.3 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVT 63 ++ +DL +K N + + AR +VVK NAYG G E++ AL G F + Sbjct: 3 RPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAML 59 Query: 64 SVEEGVKLRLYT 75 ++EE + LR Sbjct: 60 NLEEAITLRERG 71 >gi|169836938|ref|ZP_02870126.1| alanine racemase [candidate division TM7 single-cell isolate TM7a] Length = 56 Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 319 MFDITDS--LSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M + D + GD ++ FG +I + +VA GT +Y++L I R + Y Sbjct: 1 MILLPDELKDEAKKGDVVEFFGENISVVEVAELCGTISYEILCGISQRVPRIY 53 >gi|213023501|ref|ZP_03337948.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 110 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 15/115 (13%) Query: 214 RPGISLYGGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIA 269 RPGI LYG + Q V++ + +I +R AGE V YGG RD+ + Sbjct: 2 RPGIILYGVSPLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLG 61 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324 V A+GY DGYP G + G VPI+G++ MDM D+ Sbjct: 62 VVAMGYGDGYPRAA-----------PSGTPVLVNGREVPIVGRVAMDMICVDLGP 105 >gi|213416540|ref|ZP_03349684.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 68 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 LG++ MD M D + + GD ++ G L++VA A T Y+++ R+G R+ Sbjct: 2 CRSLGRVCMDSFMVDASAIMPTS-GDVVEFIGVSQTLEEVAAACDTIPYEIMARLGARFR 60 Query: 367 KF 368 + Sbjct: 61 RI 62 >gi|212639867|ref|YP_002316387.1| putative amino acid racemase [Anoxybacillus flavithermus WK1] gi|212561347|gb|ACJ34402.1| Predicted amino acid racemase [Anoxybacillus flavithermus WK1] Length = 366 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 119/347 (34%), Gaps = 40/347 (11%) Query: 7 LRLKIDLTALKNNWHSMNALS--GNARTAAVVKD-NAYGLGCEKIAPALYNAGVQDFFVT 63 R++IDL +++N ++ + AVVK N G +IA L ++GV T Sbjct: 3 PRVEIDLRKIRHNAKTLKKWCEEKGIQMTAVVKGVN----GDVEIARTLVDSGVTSLADT 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 +E KL+ A ++ + + + S + + S +H Sbjct: 59 KIERIAKLKSTHIPATYMLIRTPALSEVSEVVRHVDVSAQSEIDVVRAISAEAVKQNKTH 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + V+ G R G+ ++ F QL+ I ++ AC Q R Sbjct: 119 AIIVMVEMGDLREGVMPEDVPAFIEQVRQLPNIQLAGIGANFACFGGIIPT---EQKMRE 175 Query: 183 RTLISHYKGIEASLA-------SSSGILLGPNY----HFQLTRPGISLYGGTDKINKSHP 231 + ++ + E +L +S+ R G +++ G + I + Sbjct: 176 LSSLAKHIQKEYTLFLPYVSGGNSANYYWLKQTADVGCINHLRLGEAIFLGRETIRGAAI 235 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 A + + + V YG Q +R++ + G+ + Sbjct: 236 PGLYQDAFCLVAEVIEVKTKPSVPYGVQ---SRNAFGEAPTFPERGMMKRAIVGIGRQD- 291 Query: 292 PSVFLGGKGFIKG----YMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + G V I+G + D + D T + I+VGDYI Sbjct: 292 --------VNVNGLTPLAPVDIIGSSS-DHMIIDATRT-DIQVGDYI 328 >gi|320546814|ref|ZP_08041121.1| alanine racemase [Streptococcus equinus ATCC 9812] gi|320448531|gb|EFW89267.1| alanine racemase [Streptococcus equinus ATCC 9812] Length = 192 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 50/229 (21%) Query: 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE--ASLASSSGILLGPN 207 N++ + I +H A AD+ Q F L+ + ++S+ + Sbjct: 5 LNEQGCHVEGIFTHFATADEADLDKFEQQFSFFSELVDNLAYKPDLVHASNSATSIWHSE 64 Query: 208 YHFQLTRPGISLYGGTDK---INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 F R GI +YG + P++ ++ E+ ++ ++K AG + Y + Sbjct: 65 TIFNAVRLGIVIYGLNSSGRELELPFPLKPALSLESSLVHVKKLEAGADIGYRATYTTSG 124 Query: 265 DSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD 324 + I I YADG+ L L + Sbjct: 125 EEYIGTVPIIYADGWTLHLPKKYT------------------------------------ 148 Query: 325 SLSIEVGDYIQIFG----PDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 +G + + G + ++A T NY++L + R + Y Sbjct: 149 -----LGIKVTLIGGSGDNSVSATNLAQYKQTINYEVLCLLSDRIPRIY 192 >gi|315079986|gb|EFT51962.1| hypothetical protein HMPREF9569_02523 [Propionibacterium acnes HL078PA1] Length = 60 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 317 MTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAK 367 M D+ ++ VGD + + G + DD+A GT +Y++ I R + Sbjct: 1 QFMVDLGPDSNVTVGDEVVLIGTQEDETLTADDMAELLGTISYEITCAISKRVDR 55 >gi|50059382|gb|AAT69419.1| alanine racemase [Borrelia turicatae] Length = 95 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N+ + I+L L+ N ++ A +K +AYG G + L G+ F Sbjct: 1 MIKNK--EIIINLKNLEYNLTAIKNHIQKRELVATLKADAYGHGLIQTFKFLKEKGINYF 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96 + ++E +K++ +A + + K + Sbjct: 59 GIFWIDEALKIKKIDKRANVLLYINTDKSAIKNLVK 94 >gi|229542368|ref|ZP_04431428.1| alanine racemase domain protein [Bacillus coagulans 36D1] gi|229326788|gb|EEN92463.1| alanine racemase domain protein [Bacillus coagulans 36D1] Length = 386 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 56/343 (16%), Positives = 103/343 (30%), Gaps = 30/343 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 R++I+L +++N ++ L G VVK + IA AL AG+ Sbjct: 4 LPRVEINLEKIRHNAKTLKQLFGRKGISITGVVKGVTAD------LNIAGALVEAGITSL 57 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 + + K+R +A + +L + + I + + + + S Sbjct: 58 ADSKIANIEKMRKAGIKADLILLRSPGISEVEKTVRYADISMNTELDTIRALSAEAVRQQ 117 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ- 178 +H L V+ G R G+ L++A F +L+ I ++ AC +Q Sbjct: 118 KTHKIILMVEMGDLREGILLKDAPAMIREIFTCPGIELAGIGTNFACFGGVLPTEQKMQT 177 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHF-------QLTRPGISLYGGTDKINKSHP 231 RF + ++ S R G S+ G + Sbjct: 178 FSRFVQAMQELFSLKLPYVSGGNSANYNWAVKTKDAEAVNNVRLGESILLGRETSGGHII 237 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 A + + ++ V YG + G H Sbjct: 238 PSLYQDAFCFVAEVIESKIKPSVPYG----TIGKNAFGEQVTFIDRGNRRRTIISAGRHD 293 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 V I+G + D + D T + GD + Sbjct: 294 VLVSGLTPV----RPFHIIGSSS-DHIILD-TKDAVLVPGDEV 330 >gi|238927301|ref|ZP_04659061.1| possible alanine racemase [Selenomonas flueggei ATCC 43531] gi|238884888|gb|EEQ48526.1| possible alanine racemase [Selenomonas flueggei ATCC 43531] Length = 61 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 4 NEFLRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAG 56 N +IDL AL +N+ + + A+ AVVK +AYG G A + G Sbjct: 3 NRAAWAEIDLGALAHNYREIRSRIQKRAKLCAVVKADAYGHGAIAAARVALDEG 56 >gi|213581123|ref|ZP_03362949.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 53 Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNA 55 + I+ AL++N + L+ ++ AVVK NAYG G + A L +A Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDA 52 >gi|224824431|ref|ZP_03697538.1| alanine racemase domain protein [Lutiella nitroferrum 2002] gi|224602924|gb|EEG09100.1| alanine racemase domain protein [Lutiella nitroferrum 2002] Length = 628 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 59/342 (17%), Positives = 110/342 (32%), Gaps = 26/342 (7%) Query: 7 LRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+ IDL ++ N + + + A V K A G ++A A+ GV + Sbjct: 4 PRIIIDLDRIEENTRVLVEACRTQGIQVAGVTKS-A--CGSPRVARAMVRGGVAQIADSR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 ++ V+LR + ++ P + + + I + S + L S+ GV H Sbjct: 61 LDNIVRLRRDGISVPLMLIRAPAPAEAEQVVRHADISLNSELQTLQALSRAAVQLGVVHD 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERF 182 L +D G R G+ E +D+ +L + ++LAC V N L Sbjct: 121 VVLMIDLGDLREGILPHETMDYVEQILALAGVRLIGVGTNLACVGGIQPTVDNLSNLAYL 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 I IE + S P L G G + ++ Sbjct: 181 ADEIRRRHAIELPIVSGGNTFSLP-----LLEQGQLPAGIN---HLRLGASIMLAESPTP 232 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT--LSGLDSEHSPSVFLGGKG 300 + L + + + + D + G D + G+ Sbjct: 233 PGLYGKLHKDAYTLTADVIEAKTKPSRPYGLSGEDAFGRRPVFDGEDRPARRLILAMGRE 292 Query: 301 FIK-------GYMVPILGKITMDMTMFDITDSLSI-EVGDYI 334 I + +LG + D + D + + + +GD + Sbjct: 293 DIAPEGLRPTDERLQVLGASS-DHLIVDASAAEAAYRLGDSV 333 >gi|54303507|ref|YP_133500.1| amino acid racemase [Photobacterium profundum SS9] gi|46916937|emb|CAG23700.1| hypothetical amino acid racemase [Photobacterium profundum SS9] Length = 361 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 1 MHSNEFLRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M + RL+IDL + +N H++ V+K + LG +IA L +AGV Sbjct: 1 MRTISMPRLEIDLDKIYHNAHTLVDRLACRGISVTGVMKAS---LGSPEIARVLLSAGVN 57 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS- 117 + +E +R A + ++ Q I + + + + ++ S Sbjct: 58 MIGDSRIENIETMRRAGVAAPMILIRSPMLSQVDRIVTHADLSLNTELDVISKLSSAAKA 117 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 G H L V+ G R G+ + D L I ++LAC Sbjct: 118 AGRKHGVVLMVELGDLREGIMPADLEDTVRQVLRLPNIALRGIGANLAC 166 >gi|328676397|gb|AEB27267.1| alanine racemase [Francisella cf. novicida Fx1] Length = 231 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 21/246 (8%) Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L D G R G + + + N ++L + + Sbjct: 1 MLDFDCGMGRFGFYKDDFIKHLYKLKNAGFSNITLFSHIPTGYNGFDKSKKYIDKIL--- 57 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 ++ ++ + ++S L ++ + RP ++ G + + ++ + +A II Sbjct: 58 SLATQTKLKYTFSNSPVSLFSYDFQQEYIRPCSAILGYDQEPQE---IKFSLALKACIIS 114 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 IR G+ +SY + RD+ +A+ IGYADG + IK Sbjct: 115 IRDIPKGQYISYANEYFCDRDTTVAILNIGYADGL-----------GCKIHKDSYLIIKD 163 Query: 305 YMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLVRIG 362 PIL I MD DI+ +++ D I++FGP+ + L+ A T + L ++ Sbjct: 164 TKCPIL-AINMDYLYIDISAIKHQLKILDMIELFGPNSLSLEQHASMYNITKDEALTKLN 222 Query: 363 T-RYAK 367 R K Sbjct: 223 ALRVKK 228 >gi|218673972|ref|ZP_03523641.1| putative alanine racemase [Rhizobium etli GR56] Length = 174 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 75/131 (57%), Positives = 88/131 (67%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 LRL +DLTAL NW M SG AR AAVVK +AYGLG E ALY AG +DFFV +V+ Sbjct: 21 LRLTVDLTALTENWRDMARRSGAARAAAVVKADAYGLGIEDAGEALYLAGARDFFVATVD 80 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 EGV LRLY P ARIFVL GI PG E+ FD +L+PVISS QL F+ +++ +P AL Sbjct: 81 EGVTLRLYAPDARIFVLSGIWPGTERRFFDNDLVPVISSDEQLAFWMAVLADYGDYPCAL 140 Query: 127 QVDTGFNRLGL 137 VDTGF G Sbjct: 141 HVDTGFTGWGC 151 >gi|242241683|ref|ZP_04796128.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] gi|242234865|gb|EES37176.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] Length = 80 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 24 NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQARIFV 82 + +AR +VVK NAYG G E+I A+ G F + ++EE + LR + I + Sbjct: 1 RQAATHARVWSVVKANAYGHGIERIWSAI---GATDGFALLNLEEAITLRERGWKGPILM 57 Query: 83 LYGIHPGQEKIIFDTNLIPVISS 105 L G Q+ I+D + + Sbjct: 58 LEGFFHAQDLEIYDQHRLTTCVH 80 >gi|315079988|gb|EFT51964.1| conserved domain protein [Propionibacterium acnes HL078PA1] Length = 65 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQDFFVT 63 IDL+A+ N + +G+ + VK +AYG G +++ + V Sbjct: 10 AIIDLSAIAANLAVVRKRAGDRKVLFAVKADAYGHGAVEVSRYVEKHRYADWLAVA 65 >gi|282853032|ref|ZP_06262369.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J139] gi|282582485|gb|EFB87865.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J139] gi|314922669|gb|EFS86500.1| alanine racemase protein [Propionibacterium acnes HL001PA1] gi|314965753|gb|EFT09852.1| alanine racemase protein [Propionibacterium acnes HL082PA2] gi|314982895|gb|EFT26987.1| alanine racemase protein [Propionibacterium acnes HL110PA3] gi|315091202|gb|EFT63178.1| alanine racemase protein [Propionibacterium acnes HL110PA4] gi|315094435|gb|EFT66411.1| alanine racemase protein [Propionibacterium acnes HL060PA1] gi|315105155|gb|EFT77131.1| alanine racemase protein [Propionibacterium acnes HL050PA2] gi|327328930|gb|EGE70690.1| putative alanine racemase [Propionibacterium acnes HL103PA1] Length = 342 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTTFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + + S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVATGLLNDPKVITTISRREDVAAVRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKELDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHTDGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|50059385|gb|AAT69421.1| alanine racemase [Borrelia miyamotoi] Length = 72 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M N+ + I+ L++N S+ A +K +AYG G + L G+ F Sbjct: 1 MIKNK--EIIINFKNLEHNVISIKNHVQKRELVATLKADAYGHGLIQTFKFLKKRGINYF 58 Query: 61 FVTSVEEGVKLRL 73 + +++ +KL+ Sbjct: 59 GLFWIDDALKLKK 71 >gi|327334549|gb|EGE76260.1| putative alanine racemase [Propionibacterium acnes HL097PA1] Length = 342 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + + S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAAVRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKELDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|50843786|ref|YP_057013.1| putative alanine racemase [Propionibacterium acnes KPA171202] gi|50841388|gb|AAT84055.1| putative alanine racemase [Propionibacterium acnes KPA171202] Length = 342 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + L S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKELDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|289424666|ref|ZP_06426449.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes SK187] gi|295131874|ref|YP_003582537.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes SK137] gi|289155363|gb|EFD04045.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes SK187] gi|291377092|gb|ADE00947.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes SK137] gi|313765034|gb|EFS36398.1| alanine racemase protein [Propionibacterium acnes HL013PA1] gi|313771074|gb|EFS37040.1| alanine racemase protein [Propionibacterium acnes HL074PA1] gi|313792575|gb|EFS40661.1| alanine racemase protein [Propionibacterium acnes HL110PA1] gi|313803576|gb|EFS44758.1| alanine racemase protein [Propionibacterium acnes HL110PA2] gi|313811761|gb|EFS49475.1| alanine racemase protein [Propionibacterium acnes HL083PA1] gi|313815716|gb|EFS53430.1| alanine racemase protein [Propionibacterium acnes HL059PA1] gi|313829181|gb|EFS66895.1| alanine racemase protein [Propionibacterium acnes HL063PA2] gi|313832295|gb|EFS70009.1| alanine racemase protein [Propionibacterium acnes HL007PA1] gi|313832755|gb|EFS70469.1| alanine racemase protein [Propionibacterium acnes HL056PA1] gi|313839614|gb|EFS77328.1| alanine racemase protein [Propionibacterium acnes HL086PA1] gi|314916206|gb|EFS80037.1| alanine racemase protein [Propionibacterium acnes HL005PA4] gi|314917473|gb|EFS81304.1| alanine racemase protein [Propionibacterium acnes HL050PA1] gi|314921808|gb|EFS85639.1| alanine racemase protein [Propionibacterium acnes HL050PA3] gi|314930926|gb|EFS94757.1| alanine racemase protein [Propionibacterium acnes HL067PA1] gi|314955405|gb|EFS99810.1| alanine racemase protein [Propionibacterium acnes HL027PA1] gi|314959150|gb|EFT03252.1| alanine racemase protein [Propionibacterium acnes HL002PA1] gi|314963881|gb|EFT07981.1| alanine racemase protein [Propionibacterium acnes HL082PA1] gi|314969091|gb|EFT13189.1| alanine racemase protein [Propionibacterium acnes HL037PA1] gi|314975191|gb|EFT19286.1| alanine racemase protein [Propionibacterium acnes HL053PA1] gi|314977603|gb|EFT21698.1| alanine racemase protein [Propionibacterium acnes HL045PA1] gi|314985051|gb|EFT29143.1| alanine racemase protein [Propionibacterium acnes HL005PA1] gi|315078985|gb|EFT50997.1| alanine racemase protein [Propionibacterium acnes HL053PA2] gi|315081505|gb|EFT53481.1| alanine racemase protein [Propionibacterium acnes HL078PA1] gi|315097170|gb|EFT69146.1| alanine racemase protein [Propionibacterium acnes HL038PA1] gi|315099350|gb|EFT71326.1| alanine racemase protein [Propionibacterium acnes HL059PA2] gi|315102309|gb|EFT74285.1| alanine racemase protein [Propionibacterium acnes HL046PA1] gi|315109690|gb|EFT81666.1| alanine racemase protein [Propionibacterium acnes HL030PA2] gi|327332492|gb|EGE74227.1| putative alanine racemase [Propionibacterium acnes HL096PA2] gi|327446730|gb|EGE93384.1| alanine racemase protein [Propionibacterium acnes HL043PA2] gi|327448828|gb|EGE95482.1| alanine racemase protein [Propionibacterium acnes HL043PA1] gi|327454245|gb|EGF00900.1| alanine racemase protein [Propionibacterium acnes HL087PA3] gi|327456305|gb|EGF02960.1| alanine racemase protein [Propionibacterium acnes HL083PA2] gi|327457422|gb|EGF04077.1| alanine racemase protein [Propionibacterium acnes HL092PA1] gi|328756003|gb|EGF69619.1| alanine racemase protein [Propionibacterium acnes HL087PA1] gi|328759890|gb|EGF73480.1| putative alanine racemase [Propionibacterium acnes HL099PA1] Length = 342 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + L S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKKLDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|313814229|gb|EFS51943.1| alanine racemase protein [Propionibacterium acnes HL025PA1] Length = 342 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + L S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKKLDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|291084576|ref|ZP_06539348.2| D-amino acid dehydrogenase-Alanine racemase fusion protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 61 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 20 WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGV-QDFFVTSVEEGVKLRLYTPQA 78 + + AR +VVK NAYG G E++ AL G F + ++EE + LR + Sbjct: 1 MAIVRRAAPEARVWSVVKANAYGHGIERVWSAL---GATDGFAMLNLEEAITLRERGWKG 57 Query: 79 RIFV 82 I + Sbjct: 58 PILM 61 >gi|315107396|gb|EFT79372.1| alanine racemase protein [Propionibacterium acnes HL030PA1] Length = 342 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + L S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDVAALRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKELDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|328758968|gb|EGF72584.1| alanine racemase protein [Propionibacterium acnes HL025PA2] Length = 342 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLTIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + L S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKKLDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSALISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|289427479|ref|ZP_06429192.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J165] gi|289159409|gb|EFD07600.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J165] gi|313806848|gb|EFS45346.1| alanine racemase protein [Propionibacterium acnes HL087PA2] gi|313817636|gb|EFS55350.1| alanine racemase protein [Propionibacterium acnes HL046PA2] gi|313821539|gb|EFS59253.1| alanine racemase protein [Propionibacterium acnes HL036PA1] gi|313824517|gb|EFS62231.1| alanine racemase protein [Propionibacterium acnes HL036PA2] gi|313826862|gb|EFS64576.1| alanine racemase protein [Propionibacterium acnes HL063PA1] gi|314926263|gb|EFS90094.1| alanine racemase protein [Propionibacterium acnes HL036PA3] gi|314961655|gb|EFT05756.1| alanine racemase protein [Propionibacterium acnes HL002PA2] gi|314979928|gb|EFT24022.1| alanine racemase protein [Propionibacterium acnes HL072PA2] gi|314987120|gb|EFT31212.1| alanine racemase protein [Propionibacterium acnes HL005PA2] gi|314990678|gb|EFT34769.1| alanine racemase protein [Propionibacterium acnes HL005PA3] gi|315083072|gb|EFT55048.1| alanine racemase protein [Propionibacterium acnes HL027PA2] gi|315086606|gb|EFT58582.1| alanine racemase protein [Propionibacterium acnes HL002PA3] gi|315088007|gb|EFT59983.1| alanine racemase protein [Propionibacterium acnes HL072PA1] gi|327334117|gb|EGE75832.1| putative alanine racemase [Propionibacterium acnes HL096PA3] gi|327444477|gb|EGE91131.1| alanine racemase protein [Propionibacterium acnes HL013PA2] gi|328757984|gb|EGF71600.1| alanine racemase protein [Propionibacterium acnes HL020PA1] gi|332676740|gb|AEE73556.1| putative alanine racemase [Propionibacterium acnes 266] Length = 342 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 22/308 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L+L ID +N+ + V K N YG G E + G+ V Sbjct: 1 MLKLIIDAQRWRNHLTAFAKSCPG--IVPVTKGNGYGFGHELLVQESQRLGIDILAVGVA 58 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E +R Y + VL PG E N VI+++ + + L S Sbjct: 59 QEVASVRQYGWDKDVIVLNPWRPGDEVAAGLLNDPKVITTISRREDIAALRDLAPSASIL 118 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++V+T +R G+ E + F+ + ++ + A D+ R + Sbjct: 119 VEVETSMHRHGVPADEVAALDLDGFDLRG--WTIHLPSGASLDEG------------REM 164 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 K + L + + L++ ++ + Sbjct: 165 ARIVKQHPLASRGIWFSHLSCDDYIALSKKLDVPVRMRVGTRLWLGDANAYRVTGTVLDV 224 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R V Y + K D I V + G A G L+ + G + + Sbjct: 225 RWLPKRTPVGYH-RVKTHADGYIVVVSGGTAHGVALSAPISARSLRQWLIPGAEALQQ-- 281 Query: 306 MVPILGKI 313 ++G++ Sbjct: 282 ---MVGRV 286 >gi|167949693|ref|ZP_02536767.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 182 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 4/183 (2%) Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 ++LR + VL G+ + + + V Q + L+V Sbjct: 1 MRLRAAGIDKPLLVLEGVFDAEALRAAAAHQVAVTVHQTQQLELLEQTLLAHPIEVWLKV 60 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISH 188 D+G +RLG + + +++HLA ADDP N Q RF I Sbjct: 61 DSGMHRLGFRPEAVAAVAQRLQQTPALGVLHLMTHLANADDPQDPANQDQCVRFDA-IDT 119 Query: 189 YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN---KSHPMQTVVTAEARIILI 245 + S+A+S+G+L P RPGI LYG + + ++ V+ A +I + Sbjct: 120 TPFAQLSIANSAGLLAFPECQRDWVRPGIMLYGVSPFSEGSGEPLGLKPVMRFSAPVIAV 179 Query: 246 RKA 248 + Sbjct: 180 NRY 182 >gi|319785530|ref|YP_004145006.1| alanine racemase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171418|gb|ADV14956.1| alanine racemase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 608 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 109/338 (32%), Gaps = 18/338 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 ++ IDL ++ N ++ + V K G ++A A+ GV + Sbjct: 4 PQVAIDLGRIERNARTIVERCALSGIKVFGVTKGT---CGMPQVARAMLRGGVAGIAESR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHP 123 E +LR A I +L + + + T I + S + + S++ G H Sbjct: 61 FENIRRLRDSGINAPIMLLRSPPMARVEEVVRTVDISLQSELATIREISRIAERMGRVHD 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLERF 182 L +D G R G+ + + K +++ I ++L C + N QL Sbjct: 121 IMLMIDLGDLREGIWPNDLIPTVEQILQFKGVRIAGIGTNLGCFGAIMPTPENLGQLVAH 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 G + S P GI+ + I + A + Sbjct: 181 AYKTERLSGKSLDVISGGASSSLPLLLEGRLPAGINNLRVGEAILQGGVETFRDVPWAEL 240 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 L +++ L I + P+ D + + + Sbjct: 241 EPDACRLTSDIIEVK----LKPSRPIGQSGYDAFGNQPVFPDEGDRLRAIANIGREDVLV 296 Query: 303 KGYMVPIL-G-KI---TMDMTMFDITD-SLSIEVGDYI 334 +G + PI G ++ + D + D+ D VGD + Sbjct: 297 EG-LTPIAKGIRVLGASSDHLLLDVADADPRPSVGDRV 333 >gi|3288711|dbj|BAA31255.1| alanine racemase [Bacillus psychrosaccharolyticus] Length = 119 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 1/113 (0%) Query: 44 GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103 G ++A AG V ++E + LR A I VL P +I ++ + Sbjct: 1 GDVEVAETAIQAGAGYLAVAFLDEALALRKKGITAPILVLGASRPEDAQIAARESITLTV 60 Query: 104 SSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQ 156 L + G L+ D+G R+G+ QE ++ K Sbjct: 61 FQAGWLEAAQSFLE-GTVLTIHLKCDSGMGRIGIRKQEEMNEIERFLQKTKCF 112 >gi|225389192|ref|ZP_03758916.1| hypothetical protein CLOSTASPAR_02938 [Clostridium asparagiforme DSM 15981] gi|225044741|gb|EEG54987.1| hypothetical protein CLOSTASPAR_02938 [Clostridium asparagiforme DSM 15981] Length = 65 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMN-ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 M + ++L A+ +N M L VVK + YG G +A + V+ Sbjct: 1 MRPYNRVYATVNLDAVADNMKEMAGNLPSGTGMIGVVKADGYGHGSVPVA-MAVDPYVRG 59 Query: 60 FFVTSV 65 F V +V Sbjct: 60 FAVATV 65 >gi|261885821|ref|ZP_06009860.1| alanine racemase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 154 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 24/175 (13%) Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253 +S+ I + + R GI +G + + ++S ++ V++ A I R AG+ Sbjct: 2 FHSHNSAAIERTNGFDDEFVRAGIVQFGYS-QFDESLNLKKVLSLWADRISKRVLKAGQS 60 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 V YGG +D IA + Y DG +G H G ILGK+ Sbjct: 61 VCYGGAFTAKKDINIATYDLRYGDGLLR-YNGKGDLH----------LANGEK--ILGKM 107 Query: 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKF 368 +MD + GD I +F A T +YD+LV++ ++ + Sbjct: 108 SMDSF-------SCADSGDQICVFDD---ARVWAKFFDTRSYDILVKLSSKIKRV 152 >gi|242399549|ref|YP_002994974.1| Alanine racemase, N-terminal [Thermococcus sibiricus MM 739] gi|242265943|gb|ACS90625.1| Alanine racemase, N-terminal [Thermococcus sibiricus MM 739] Length = 354 Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 23/341 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 F L+I+L+A+++N + + K A G K+A A+ GVQ + Sbjct: 2 FPALEINLSAIEDNVRRVVEFCTSYGINVVGITKG-A--CGEPKVAKAILRGGVQILGDS 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122 ++ +K++ +A ++ + + + + S + L SK + G H Sbjct: 59 RIQNIIKMKESNVKAEFMLIRSPMISEVESVVKYAEYSLNSELKVLEQLSKASLEYGRRH 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLER 181 + VD G R G+ E + F + K ++ + ++L C + N L++ Sbjct: 119 KAIIMVDVGDRREGIMPNEFVPFLKEAKKLKGVEIVGVGTNLGCFGGVLPTPRNHEMLKK 178 Query: 182 FRTLISHYKGIEASLASSSGILLGP-------NYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + GIE + SS G ++ +Y R G + GTD + Sbjct: 179 LTEKVKYILGIENPIISSGGTVVLNLLEREQSSYGINQLRIGEGILLGTDSTG--NRTIP 236 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + + + S I G + L + Sbjct: 237 WLRQDTFTLKAEIVEVKWKPSLPEGPV--GKDAFGNTPIFEDLGI-RKRAILALGKQDTE 293 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYI 334 G G V +LG + D T+ DIT+S ++VGD + Sbjct: 294 ISGLFPLYSG--VKVLGGSS-DHTIIDITESKVPLDVGDIV 331 >gi|223042373|ref|ZP_03612422.1| alanine racemase, N- domain family [Staphylococcus capitis SK14] gi|222444036|gb|EEE50132.1| alanine racemase, N- domain family [Staphylococcus capitis SK14] Length = 351 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 111/334 (33%), Gaps = 31/334 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+K++L+ ++ N + L + VVK A G E+I + + G+ F + Sbjct: 1 MARIKVNLSKIQYNAKVLQTLLERRQIHFTPVVKCVA---GDERIVSTIKSLGITHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++ +LR + ++ + ++ QL + V H Sbjct: 58 RIDNIERLRDLNITFTLLRPTTEFETMIS-TVKLSIQTELDTIKQLNVIA--KRMNVKHQ 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERF 182 L VD R G+ + LD+ + QL + + C + N + +F Sbjct: 115 IMLMVDWKDGREGVLTYDVLDYIKEIMSMSHIQLVGLAFNFMCFKSKAPEENDVFMINKF 174 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + G + + S + P + G + T A + Sbjct: 175 ISAVEKEIGYKFKIISGGNSSMLPQTMYN--DLGKINELRIGEALFRGIDTTTNEPIASL 232 Query: 243 ILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 L E++ + + L A+ IGY D + + + ++ Sbjct: 233 YQDAIVLEAEIIEIKPRINQVTHQSYLQAIVDIGYLDTFTDGIKPIAND----------- 281 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + ++G + D M D+ + ++GD I Sbjct: 282 ------LKMVGASS-DHLMIDLNNQDHYQIGDRI 308 >gi|320546815|ref|ZP_08041122.1| hypothetical protein HMPREF0819_0528 [Streptococcus equinus ATCC 9812] gi|320448532|gb|EFW89268.1| hypothetical protein HMPREF0819_0528 [Streptococcus equinus ATCC 9812] Length = 80 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 35 VVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKII 94 +VK NAYG G ++A + + V F V++++E ++L+ I +L I P + + Sbjct: 1 MVKANAYGHGAVQVAQHIRSL-VDGFCVSNIDEAIELQESDITEVILILGIIMPEEIVLA 59 Query: 95 FDTNLIPVISSVPQ 108 + + S+ Sbjct: 60 KKYQITVTVDSMEW 73 >gi|307265382|ref|ZP_07546939.1| alanine racemase domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919666|gb|EFN49883.1| alanine racemase domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 373 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 102/342 (29%), Gaps = 38/342 (11%) Query: 11 IDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL L++N M +VK IA N G + F V +++E Sbjct: 14 VDLDKLESNIKEMADTCRKNGKELWPMVKT----HKSTAIAKMQQNYGSKGFLVGTIDEA 69 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHP 123 KL + + + I ++ G+S Sbjct: 70 EKLTENGFKEIMIAYPVASKENIERILTLAQKAHVILSFDGVEAAAKVEETCNRIGLSMD 129 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 Y + +D+G +R G+ ++ L+ + + I +H +E + Sbjct: 130 YLIIIDSGLHRFGVVPEKVLELAEKLKSFTHLKFKGIATHP------GHTYAKRNIEEIK 183 Query: 184 TLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + A+ + + P + + IN P V ++ Sbjct: 184 AVAQEEVEALTTAANILKKEGYSVDIVATGSTPTAAFVVSSKIINILRPGNYVFYDAIQV 243 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 L L ++ + + G GLD + G G + Sbjct: 244 ALGVSPLEKCALTVLATVIAHPKEDLFIIDAGS------KCFGLDKGAHGVSLINGYGIV 297 Query: 303 KGYMVPI-------LGKITMDMTMFDITDSLSIEVGDYIQIF 337 KGY + +GK+ +T I+VGD I+I Sbjct: 298 KGYPELVVESLSEEVGKV-------KVTAPTDIKVGDKIEII 332 >gi|28572426|ref|NP_789206.1| alanine racemase II [Tropheryma whipplei TW08/27] gi|28410557|emb|CAD66943.1| alanine racemase II [Tropheryma whipplei TW08/27] Length = 220 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + + + + E+ ++ +K AG VSY + + +A+ IGYADG P Sbjct: 90 LGDNTECKAALHLESCVVTCKKLPAGAGVSYCHTYRTQSEENVALIGIGYADGLPFQAQ- 148 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339 G IK PI+G+I MD + +T S + G + ++G Sbjct: 149 ------------GSVEIKKRKYPIIGRIAMDYMVAKVTPD-SYKHGTRVTVWGE 189 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 19/40 (47%) Query: 38 DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77 +A+G G KIA LY+ GV+ FV E + L Sbjct: 33 ADAFGHGLVKIAYTLYSTGVRKCFVRKAHEKIFLEEIGFT 72 >gi|28493462|ref|NP_787623.1| alanine racemase-like protein [Tropheryma whipplei str. Twist] gi|28476503|gb|AAO44592.1| alanine racemase-like protein [Tropheryma whipplei str. Twist] Length = 224 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 + + + + E+ ++ +K AG VSY + + +A+ IGYADG P Sbjct: 94 LGDNTECKAALHLESCVVTCKKLPAGAGVSYCHTYRTQSEENVALIGIGYADGLPFQAQ- 152 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGP 339 G IK PI+G+I MD + +T S + G + ++G Sbjct: 153 ------------GSVEIKKRKYPIIGRIAMDYMVAKVTPD-SYKHGTRVTVWGE 193 Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 19/40 (47%) Query: 38 DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77 +A+G G KIA LY+ GV+ FV E + L Sbjct: 37 ADAFGHGLVKIAYTLYSTGVRKCFVRKAHEKIFLEEIGFT 76 >gi|314934244|ref|ZP_07841603.1| putative amino acid racemase [Staphylococcus caprae C87] gi|313652174|gb|EFS15937.1| putative amino acid racemase [Staphylococcus caprae C87] Length = 351 Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 111/334 (33%), Gaps = 31/334 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+K++L+ ++ N + L + VVK A G E+I + + G+ F + Sbjct: 1 MARIKVNLSKIQYNAKVLQTLLERRQIHLTPVVKCVA---GDERIVSTIKSLGITHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++ +LR + ++ + ++ QL + V H Sbjct: 58 RIDNIERLRDLNITFTLLRPTTEFETMIST-VKLSIQTELETIKQLNVIA--KRMNVKHQ 114 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERF 182 L VD R G+ + LD+ + QL + + C + N + +F Sbjct: 115 IMLMVDWKDGREGVLTYDVLDYIKEIMSMSHIQLVGLAFNFMCFKSKAPEENDVFMINKF 174 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 + + G + + S + P + G + T A + Sbjct: 175 ISAVEKEIGYKFKIISGGNSSMLPQTMYN--DLGKINELRIGEALFRGIDTTTNEPIASL 232 Query: 243 ILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 L E++ + + L A+ IGY D + + + ++ Sbjct: 233 YQDAIVLEAEIIEIKPRINQVTHQSYLQAIVDIGYLDTFTDGIKPIAND----------- 281 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + ++G + D M D+ + ++GD I Sbjct: 282 ------LKMIGASS-DHLMIDLNNQDHYQIGDRI 308 >gi|242371844|ref|ZP_04817418.1| amino acid racemase [Staphylococcus epidermidis M23864:W1] gi|242350351|gb|EES41952.1| amino acid racemase [Staphylococcus epidermidis M23864:W1] Length = 353 Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 112/335 (33%), Gaps = 31/335 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+ ++L+ +K N + + + VVK A G E+I + + G+ F + Sbjct: 1 MARINVNLSKIKYNAKVLQTILERKQIHFTPVVKCVA---GDERIVSTIQSLGITHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++ +L+ +L + + + + + + + + + + V H Sbjct: 58 RLDNIERLKDL--DVTFTLLRPTTESEFEAMVSKVKMSIQTELHTIKKLNTIAKKLNVKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLER 181 L +D R G+ + LDF N QL + + C + N + + Sbjct: 116 QIMLMIDWKDGREGVLTYDTLDFIKEIMNLNHIQLVGVAFNFMCFKSAAPEENDVFMINK 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F + + G + + S + P + G + T A Sbjct: 176 FVSAVEKEMGYKFKIISGGNSSMLPQTMYN--DLGKINELRIGEALFRGVDTTTNEPIAS 233 Query: 242 IILIRKALAGELVSYGGQKK--LTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + L E++ + + L A+ IGY D + + + ++ Sbjct: 234 LYQDAIVLEAEIIEIKPRINQLTHQSYLQAIFDIGYLDTFIEGIKPIANDI--------- 284 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 I+G + D M D+ + ++GD I Sbjct: 285 --------KIIGASS-DHLMIDLNNQDHYQIGDRI 310 >gi|213024361|ref|ZP_03338808.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 42 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGC 45 + I+ AL++N + L+ ++ AVVK NAYG G Sbjct: 4 ATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGS 42 >gi|13474743|ref|NP_106312.1| hypothetical protein mlr5700 [Mesorhizobium loti MAFF303099] gi|14025498|dbj|BAB52098.1| mlr5700 [Mesorhizobium loti MAFF303099] Length = 608 Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 62/355 (17%), Positives = 110/355 (30%), Gaps = 52/355 (14%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYG-LGCEKIAPALYNAGVQDFFVT 63 ++ IDL ++ N ++ + V K G G ++A A+ GV + Sbjct: 4 PQVAIDLGRIERNARTIVDRCALSGIKVFGVTK----GMCGMPQVARAMLRGGVAGIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 E +LR A I +L + + + T I + S + + S++ G H Sbjct: 60 RFENIRRLRDSGINAPIMLLRSPPMARIEEVVRTVDISLQSELATIREISRIAERMGRVH 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNSVQLER 181 L +D G R G+ + + K +++ I ++L C + N QL Sbjct: 120 DIMLMIDLGDLREGIWPNDLIPTVEQILQFKGVRIAGIGTNLGCFGAIMPTPENLGQLVA 179 Query: 182 FRTLISHYKG-----------------IEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 G +E L + L + + G+ + Sbjct: 180 HAYKTERLSGKSLDWISGGASSSLTLLLEGRLPAGINNLRVGEA---ILQGGVETFRDVP 236 Query: 225 KINKSHPMQTVVTAEARIILIRKALAGEL----VSYGGQKKLTRDSLIAVAAIGYADGYP 280 + + + L GE D L A+A IG D Sbjct: 237 WAELEPDACRLTSDIIEVKLKPSRPIGESGYDAFGNQPVFPDEGDRLRAIANIGREDVLV 296 Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYI 334 L+ + KG +LG + D + D+ D VGD + Sbjct: 297 EGLTPIA---------------KGIR--VLGASS-DHLLLDVQDADPRPAVGDRV 333 >gi|237739789|ref|ZP_04570270.1| alanine racemase [Fusobacterium sp. 2_1_31] gi|229423397|gb|EEO38444.1| alanine racemase [Fusobacterium sp. 2_1_31] Length = 315 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 117/330 (35%), Gaps = 29/330 (8%) Query: 48 IAPALYNAGVQDFFVTSVEEGVKLRLYT----PQARIFVLYGIHPGQEKIIFDTNLIPVI 103 IA ALY+ V+ + V E V + Y +++ ++ I Sbjct: 2 IAKALYDYDVKVWAVARYSEAVSICEYFKTLSIDDFKILIFESLIDDYSLLEKYPQICP- 60 Query: 104 SSVPQLTFYSKLMSCGVSH-PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162 ++ + ++ +S +L++D GF R G+ +E + + L LS+ Sbjct: 61 -TLNSIKDLKNALANNISIDRLSLKIDFGFGRNGIKAEEVDELKNLIKYNSLKFLSIFSH 119 Query: 163 HLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGG 222 + + V ++ L +++GI R G+ YG Sbjct: 120 LFSASYTDGLEVIKK-FTDLVNMLGRNNFEMVHLQNAAGIYNYDVDIVTHIRTGMLTYGL 178 Query: 223 TDKINKSHPMQTVVTAE-ARIILIRKALAGELVSYGGQKKLT-RDSLIAVAAIGYADGYP 280 + M+ V T + +R + V+Y + IA IGY DG+ Sbjct: 179 QEAGFYDLDMKPVFTGLIGYVDSVRYVNELDYVAYQELSSIDPGTKKIAKIKIGYGDGFS 238 Query: 281 LTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 IK ++ ++TMD T ++ D + VGD + ++ Sbjct: 239 ------------KANNKTTCLIKKKEY-VISQVTMDNTFIEVDD--RVNVGDEVHLY--- 280 Query: 341 IKLDDVALASGTTNYDLLVRIGT-RYAKFY 369 + +++ +G + +LL+ I R + + Sbjct: 281 HRPNEIKTKTGFSMLELLIAISPLRVKRIF 310 >gi|302392467|ref|YP_003828287.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501] gi|302204544|gb|ADL13222.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501] Length = 360 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 108/352 (30%), Gaps = 45/352 (12%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVK---DNAYGLGCEKIAPALYNAGVQD 59 + RL++DL + N + L+ + V K + KIA A+ GV Sbjct: 2 SYPRLEVDLDKVTANAERIVNLADSEDIEIIGVTKSVCAD------IKIAEAMLAGGVDG 55 Query: 60 FFVTSVEEGVKLRLY--TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +P + +L + + + I + S + + ++ Sbjct: 56 LADSRIKNLKYMQENLVSPDIPLMLLRIPMISEVDRVVEYADISLNSELEVIKALDQVAK 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 H L VD G R G+ ++ +D + + +L+ + ++LAC N+ Sbjct: 116 EMNQKHRIILMVDVGDRREGVMPEDVIDIAAEILDLENIELTGLGTNLACFGGVLPSENN 175 Query: 177 VQL---------ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN 227 +QL +F I G +S P+ QL L G Sbjct: 176 MQLLIDLKNEINNKFGVNIQQISGGNSSSLPRLRNKGLPDEITQLRVGETILLGSNVIDR 235 Query: 228 KSHPMQTVVTAEAR---IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL--- 281 P T I + +K + E R G Sbjct: 236 SPFPDTYQETFLLAAEVIEVKKKPVQPEGRRGQNAFGERRKITKTGVRRRAILGIGRQDI 295 Query: 282 TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGD 332 + GL + D + D+TD IEVGD Sbjct: 296 KMKGLTPLAEDIEIEEA---------------SSDHLIIDVTDYEAGIEVGD 332 >gi|222099835|ref|YP_002534403.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359] gi|221572226|gb|ACM23038.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359] Length = 375 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 43/341 (12%), Positives = 100/341 (29%), Gaps = 29/341 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R+ I+L ++ N + ++ V K LG + A AL AG++ + Sbjct: 24 YPRVLINLKEIEENARKVVQMAEKRGIEIVGVTKVT---LGDPRFAEALKRAGIKILGES 80 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122 ++ ++++ + +L + ++S + G + Sbjct: 81 RLKNVLRMKKAGIEGPFMLLRLPMMSELVEDVKHFDYIMVSDPKVARMVEELSKETGRNV 140 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +D G R G+ ++A++ + + + + Sbjct: 141 KIIYMIDVGDLREGVWYEKAVEEISQCNPSSISGIGTNFGCYGGIIPTKEKFEMLLSIKE 200 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS---HPMQTVVTAE 239 + H IE ++ LL G + + + + ++ + Sbjct: 201 KLEKEHGFNIEIVSGGNTPTLLALESGEIPEGVNQLRIGEAIALGRDITNNRVIDWLSQD 260 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD-GYPLTL------SGLDSEHSP 292 I+ E S R + + + D G +DS Sbjct: 261 TFIVEAEVIEVKEKPSIP---VGRRGLDVFGRKVEFVDRGIRRRAICALGEQDIDSRGLI 317 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 V G + + D + D+T+ ++VGD Sbjct: 318 PVDKGVEVLHA----------SSDHIVLDVTEYGDVKVGDV 348 >gi|218515609|ref|ZP_03512449.1| alanine racemase protein [Rhizobium etli 8C-3] Length = 68 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYN 54 L IDL AL N+ + ++ R AVVK +AYGLG E++A LY+ Sbjct: 23 LTIDLAALGRNYLKLASMLAPVRAGAVVKADAYGLGAERVAQTLYD 68 >gi|320096312|ref|ZP_08027876.1| hypothetical protein HMPREF9005_2488 [Actinomyces sp. oral taxon 178 str. F0338] gi|319976762|gb|EFW08536.1| hypothetical protein HMPREF9005_2488 [Actinomyces sp. oral taxon 178 str. F0338] Length = 67 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 323 TDSLSIEVGDYIQIFGP----DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 + + VGD +FG D A A+GT NY+++ R+G + Sbjct: 10 SGAPPARVGDGAVLFGDPATGAPTADQWAAAAGTINYEVVTRLGDHIPRI 59 >gi|302390042|ref|YP_003825863.1| alanine racemase domain protein [Thermosediminibacter oceani DSM 16646] gi|302200670|gb|ADL08240.1| alanine racemase domain protein [Thermosediminibacter oceani DSM 16646] Length = 355 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 108/345 (31%), Gaps = 27/345 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R++I+L+ ++ N + L + + K + + + GV+ + Sbjct: 3 YPRIEINLSLIRENARYIVDLCKRSGIEVMGITKGF---CALLPVVRTMVDGGVKKLGDS 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++ ++ + I+++ P + + + S + S+ G H Sbjct: 60 RIKNIKNMKCSGLEIPIYLIRIPMPSEVEEVVRWADGSFNSEPEVIDLLSEKARALGKIH 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLER 181 L VD G R G+ ++ + + + +++ C N+ L Sbjct: 120 RVILMVDVGDLREGVMPEDVPEVVGRILEMPGVEFEGLGTNVGCYGGVLPSYENTKILVD 179 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLY----GGTDKINKSHPMQTVVT 237 I G+ S PG++ G + ++ T Sbjct: 180 LARDIEKRYGVRVKTISGGNTATLKLVENGRIAPGVNQLRIGEGILLGTDPTNGRNVPGT 239 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 ++A ++L + + K+ I P+ + + Sbjct: 240 SQATMVLKAEIIE---------VKVKPSKPIGEIGRDAFGNIPVFEDRGPMKRAIVALGK 290 Query: 298 GKGFIKG-----YMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336 I+G + ILG + D + D+T + I VG ++ Sbjct: 291 QDCRIEGLIPLDESIEILGASS-DHLLLDVTRAKRDIRVGSVVEF 334 >gi|166362859|ref|YP_001655132.1| putative amino acid racemase [Microcystis aeruginosa NIES-843] gi|166085232|dbj|BAF99939.1| putative amino acid racemase [Microcystis aeruginosa NIES-843] Length = 361 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 98/343 (28%), Gaps = 31/343 (9%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++I L +++N + S V K LG IA A+ GV + Sbjct: 5 LPRIEISLPKIRHNARLLCQFYGSKGLSVMGVSKAI---LGDPSIALAMIQGGVNFIADS 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E +K++ +L E ++ ++ H Sbjct: 62 RIENILKMKQAGIVTTFVLLRTALSQAESVVNIADISLNTELATIQELSYYAQEKQKIHR 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLERF 182 + + G R G+ ++ + F + ++ + +LAC N +L Sbjct: 122 IIIMTELGDLREGVLPKDLVKFIKKTLAFPFIKIIGLGCNLACYGGIKPDSHNMSKLSVL 181 Query: 183 RTLISHYKGIEASLASSSGILLGPNYH-------FQLTRPGISLYGGTDKINKSHPMQTV 235 I I+ + S Y R G S+ G + +N+ Sbjct: 182 TDTIEQEFLIKLPIISGGNSANYQWYQKSSEVGRINNLRLGESILLGCETVNRQVIPGLY 241 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 A I + ++ + G + G Sbjct: 242 TDAFRLIAEVIESKDKPSLPSGEIGR----DAFGNVPSFIDQGIHR--------RVIIAL 289 Query: 296 LGGKGFIKG----YMVPILGKITMDMTMFDITDSLSIEVGDYI 334 I G + ILG + D + D + + ++VG + Sbjct: 290 GRQDILISGLQTSQEIKILGSSS-DHLVLD-SHNKRLKVGSEV 330 >gi|254410610|ref|ZP_05024389.1| Alanine racemase, N-terminal domain family [Microcoleus chthonoplastes PCC 7420] gi|196182816|gb|EDX77801.1| Alanine racemase, N-terminal domain family [Microcoleus chthonoplastes PCC 7420] Length = 373 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 103/336 (30%), Gaps = 17/336 (5%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R++I L+ +++N + L G+ V K LG I A+ GV+ + Sbjct: 5 MPRIEISLSQIRDNARMLCELYGHRGISLMGVSKAV---LGEPSIVEAMIQGGVKFIADS 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E K++ + +L E ++ ++ +H Sbjct: 62 RIENIQKMKNAGISTQFVLLRTPFSQAEAVVTSVDISLNTEIETIKQLSYYAKIHNRNHQ 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLERF 182 + V+ G R G+ + F + ++ I +LAC N +L Sbjct: 122 IIVMVELGDLREGVLPGDLSQFIRKILSLSRIKIVGIGCNLACYGGVKPDKKNMHKLSEL 181 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 I I + S G + +++ + + + + T + Sbjct: 182 VNGIQKEFQINLEIISG-----GNSANYEWYKSAQYIGNINNLRLGESILLGRETVNRKA 236 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 I A +LV+ + K P S+ + Sbjct: 237 IPGLHTEAFKLVAEVIESKTKPSLPFGEICQDAFGNVPSFSDRGISQRVIIALGRQDVLV 296 Query: 303 ----KGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + ILG + D + D + +++VGD + Sbjct: 297 SSLKSKKKLEILGASS-DHIILD-GKNHNLQVGDEV 330 >gi|332798070|ref|YP_004459569.1| alanine racemase domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695805|gb|AEE90262.1| alanine racemase domain protein [Tepidanaerobacter sp. Re1] Length = 371 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 13/156 (8%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M E + +DL L+NN AL + + ++K +I AG Sbjct: 1 MEKKELQTPAILVDLDILENNIKKAQALCDAHDKELWPMIKT----HKSTEIVKMQQEAG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTF 111 F +++E L + ++ P + + + +I + + Sbjct: 57 AAGFLCGTLDECEGLAKAGIKNIMYAYPVASPVNIQRVIELSKKCNFIIRIDNYDGAKML 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTH 147 + GV Y + +D+G +R G+ ++ LDF + Sbjct: 117 NDAAEAAGVKVNYTIIIDSGLHRFGILPEKVLDFAN 152 >gi|330685135|gb|EGG96799.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 359 Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 106/333 (31%), Gaps = 33/333 (9%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +KI+L+ ++ N + + + + + V+K A G +I L G+ F + Sbjct: 1 MANIKINLSKIQYNAKVLQTILDAKHIQFTPVIKSIA---GDLQIVQKLIELGITHFADS 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 +E +L +L Q + I + + + + +++ + H Sbjct: 58 RLENIRQL--TNFDCSFTILRSTQLSQLDNMIKDTQISIQTELNTIIELNRIAQHLNIKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + + + N QL + + C + + + Sbjct: 116 QVILMVDWKDGREGVLTYDVVKYIETILNLSHIQLVGVSFNFMCFKSSSPIEDDVFMINK 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F + I G + S + P + L + G T V + Sbjct: 176 FVSAIEREIGYRMKIVSGGNSSMLPLTMYNDLGKINELRIGETLFRGVDTTTDKPV---S 232 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLI--AVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + L E++ + A+ IGY D +S + ++ Sbjct: 233 HLYQDAIVLEAEILEIKPRMNSHTKQSYLQAIVDIGYIDTDTTHISPIANDIQ------- 285 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331 I+G + D M D+ + ++G Sbjct: 286 ----------IIGASS-DHLMIDLNNQDHYQIG 307 >gi|258646332|ref|ZP_05733801.1| amino acid racemase [Dialister invisus DSM 15470] gi|260403726|gb|EEW97273.1| amino acid racemase [Dialister invisus DSM 15470] Length = 356 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 56/350 (16%), Positives = 100/350 (28%), Gaps = 37/350 (10%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RLKI L ++ N + L R V K G ++A A G+ + Sbjct: 2 YPRLKIYLKRIEENTRVVKQLCAGHGIRVMGVTKA---CCGAPELAEAYLAGGLAMIGDS 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVSH 122 V KL +A +++ + + + + + S + + +K G H Sbjct: 59 RVANLKKL--ENIEAEKWLIRPPMLSEIEDLVCYADVSLQSEMETVRAINKECEKQGKCH 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHN------SFNKKLGQLSLIISHLACADDPSSHVNS 176 L +D G R G +E L + +L AD+ Sbjct: 117 KIILMMDLGDIREGYVDEEELIAAAVETEKLSRVDLYGIGTNLTCFSFIQADEEK----M 172 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 +L R + + G + S G + L G G N + Sbjct: 173 ERLAEMRKKVENAAGHTLEIVSG-----GNSAALDLMMRGGICEGVD---NFRLGESLLF 224 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT--LSGLDSEHSPSV 294 E + + + D Y + + + Sbjct: 225 GKERSRYTFLPGTRNDGFILECEVVEAKVKPSLPWGTAGVDSYGRKPVFTNRGEKRKKVI 284 Query: 295 FLGGKGFIKGYMVP-------ILGKITMDMTMFDITD-SLSIEVGDYIQI 336 G+ ILG + D M D+TD +VGD +++ Sbjct: 285 CAIGRQDFDAETATPVDEGILILGASS-DHLMLDVTDSVKEYKVGDIVEL 333 >gi|288573583|ref|ZP_06391940.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569324|gb|EFC90881.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 353 Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 103/347 (29%), Gaps = 31/347 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + L +D LK N + + AAV K Y G +IA +GV Sbjct: 2 RYPALIVDREKLKENTSKLAKECHDRGIKVAAVSK--VY-CGMPEIASVQAESGVDWIAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + +E K+R +L Q + + + +S V SK Sbjct: 59 SRLENLAKMRD--IDIPKILLRLPMISQARETVELADMSFVSEVDTCRALSKAAVAMKKE 116 Query: 123 PYA-LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLE 180 L VD G R G+ A+D + L I ++L+C S N QL Sbjct: 117 HQVLLMVDVGDLREGVWPDRAVDTAREIASMPGLILKGIGTNLSCYGAVLPSPENLGQLV 176 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 I GI + S + + L GG + + +T Sbjct: 177 SVADSIESECGIHLDIVSGG----------NSSSIRLLLSGGIPERINMLRLGESMTIGK 226 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD----GYPLTLSGLDSEHSPSVFL 296 + ++ IG G+ V + Sbjct: 227 ETADCTVIPGLHSDVFTFAAEVIELKTKPSIPIGKKGLDAFGHEPVFEDRGLRKRAIVAV 286 Query: 297 GGKGFI------KGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336 G + + ILG + D + D+TD +++GD I+ Sbjct: 287 GQQDMRLDAISPRDKKTDILGASS-DHMILDVTDGERDLKIGDVIEF 332 >gi|310657359|ref|YP_003935080.1| alanine racemase domain-containing protein [Clostridium sticklandii DSM 519] gi|308824137|emb|CBH20175.1| Alanine racemase domain protein [Clostridium sticklandii] Length = 364 Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 109/368 (29%), Gaps = 58/368 (15%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVK-DNAYGLGCEKIAPALYNAGV 57 M + + L+IDL + N ++ + + VVK ++ +++A AG Sbjct: 1 MENTAYPNLQIDLKKIYQNAKNLVSFANTNGINITGVVKGSDS----SKEVAKEFIKAGC 56 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + +E+ KL+ + + +L + + + + I + S + L + Sbjct: 57 MGIADSRIEKLAKLKEEGIKEDMMLLRVPMLCEVEQVVRYSEISLNSEIVVLEALNIEAN 116 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALD---FTHNSFNKKLGQLSLIISHLACADDPSSH 173 + H L D G R G +E L + L + + Sbjct: 117 NQNKIHKVILMADLGDLREGYIDEEELIKTALHIETKLDNLHMYGVGTNLGCFGAICPDE 176 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHP 231 N +L + IS G + + S P GI+ G + + Sbjct: 177 SNLGKLVQISEKISALIGRKLEIVSGGATTSLPLLFDSKMPKGINHLRVGEAMLLARDLI 236 Query: 232 MQTVVTAEA---------------------RIILIRKALAGELVSYGGQKKLTRDSL-IA 269 + E I I G Y + R + + Sbjct: 237 DLWGYSMEGYHTDTFVLEAQVIEVKEKPSHPIGRIFVDAFGNTPEYEDKGIRKRALIALG 296 Query: 270 VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSI 328 IG+ D L G+ E S S D + D+TD I Sbjct: 297 KKDIGHHDSLIPKLKGITVEGSSS----------------------DHVILDVTDAVEEI 334 Query: 329 EVGDYIQI 336 VGD I+ Sbjct: 335 HVGDIIEF 342 >gi|289550210|ref|YP_003471114.1| hypothetical protein SLGD_00839 [Staphylococcus lugdunensis HKU09-01] gi|289179742|gb|ADC86987.1| Hypothetical protein SLGD_00839 [Staphylococcus lugdunensis HKU09-01] Length = 362 Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 63/350 (18%), Positives = 110/350 (31%), Gaps = 57/350 (16%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +L I+L +K N + + S + VV A G +I L G+ + + Sbjct: 1 MPKLNINLAKIKYNAQVLQSFLASKDINFTPVVTAIA---GDREILKVLKQVGLTEIADS 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 + R P +L +K I I V + + + +++ G +H Sbjct: 58 RL--ANIQRFGDPDVNFILLKSHAEDCDKEIIQHVKISVQTELTSIYRLNEVAQTLGTTH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSSHVNSVQ 178 L VD R G+ + L + H + K ++ + + A Q Sbjct: 116 QIVLMVDWKDGREGVLTYDVLQYLHEIMSLKHIKVIGLAFNFMSFKSEAPSDDDIFTMNQ 175 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHF------------QLTRPGISLYGGTDKI 226 F + G L S + P + G + G Sbjct: 176 ---FICAVEKELGYRLKLISGGNSSMLPQLMYNDLGKINDLRIGDTLFRGENTTSGQPMP 232 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 N Q +T EA+II I+ + E + L A+ IGY D + + Sbjct: 233 NL---YQHAITLEAQIIEIKPRVNMET---------KQSYLQAIVNIGYIDTVTNNIQPM 280 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 D + I+G + D M D+ + ++GD I Sbjct: 281 D-----------------KELKIIGASS-DYLMIDLNNQDGYQLGDTITF 312 >gi|188585830|ref|YP_001917375.1| alanine racemase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350517|gb|ACB84787.1| alanine racemase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 360 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 51/349 (14%), Positives = 98/349 (28%), Gaps = 34/349 (9%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVK---DNAYGLGCEKIAPALYNAGVQD 59 R++I + N + + N V K + +I A G+ Sbjct: 4 RSPRVEIYADRIAYNVEYLQKQAAKNNISLVGVTKGVLAD---H---QILDAYLKGGLDY 57 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSC 118 ++ ++R Y + +L + + + + + S + L + Sbjct: 58 LGDARIQNLKRVRDYGFSGKTLLLRAPMYSEISQVINFANVSLNSELDTLKLLDEESKKQ 117 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 G +H Y + VD G R G+ ++ F + + + + ++ C + Q Sbjct: 118 GKTHGYIIMVDVGDRREGVLPEDVKSFVKEAIKLENVKFEGLGLNVGCFGGVLPTTENAQ 177 Query: 179 LERFRTLISHYKGIE--------ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 + +GIE + P QL L G Sbjct: 178 ILIDLKSELEQEGIEVPTISGGSTCGLNIMFHNQLPEGINQLRVGEAFLIGNDSVRETPI 237 Query: 231 P--MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P Q II I+ + G G + D Sbjct: 238 PGTYQDTFRLVTEIIEIKDRPSQPEGEIGKDPFGNVPEF---PDRGIRKRAIAAIGKQDV 294 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQI 336 + + I+G + D + DITD + ++GD I Sbjct: 295 AIGSLLPEDEQVTIEGA--------SSDHLILDITDSDHNYKIGDEITF 335 >gi|254976416|ref|ZP_05272888.1| putative amino acid racemase [Clostridium difficile QCD-66c26] gi|255093801|ref|ZP_05323279.1| putative amino acid racemase [Clostridium difficile CIP 107932] gi|255315553|ref|ZP_05357136.1| putative amino acid racemase [Clostridium difficile QCD-76w55] gi|255518216|ref|ZP_05385892.1| putative amino acid racemase [Clostridium difficile QCD-97b34] gi|255651332|ref|ZP_05398234.1| putative amino acid racemase [Clostridium difficile QCD-37x79] gi|260684394|ref|YP_003215679.1| putative amino acid racemase [Clostridium difficile CD196] gi|260688053|ref|YP_003219187.1| putative amino acid racemase [Clostridium difficile R20291] gi|306521163|ref|ZP_07407510.1| putative amino acid racemase [Clostridium difficile QCD-32g58] gi|260210557|emb|CBA65100.1| putative amino acid racemase [Clostridium difficile CD196] gi|260214070|emb|CBE06245.1| putative amino acid racemase [Clostridium difficile R20291] Length = 370 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 48/334 (14%), Positives = 92/334 (27%), Gaps = 24/334 (7%) Query: 12 DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL L+ N + + N + ++K IA NAG F V +++EG Sbjct: 14 DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLVGTLDEGE 69 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LIPVISSVPQLTFYSKLMSCGVSHPY 124 L + + + I + + + + Sbjct: 70 ALIKAGFEDIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECKL 129 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VD G +R G+ ++ ++ + ++ I SH SS Sbjct: 130 LIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPE-----GVPDV 184 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +E + + + + P + + I P V +I L Sbjct: 185 CVQEDSSMEKAYKALTDNGFNIEIVASGSTPTVEAEAASKTITAVRPGNYVYYDAIQIGL 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ S + G G G S G Sbjct: 245 GCATEDMCALTVVCTVISKNSSGYYLIDCGSKCLGLDKGAHGNSSIVGYGRVCGHPELTI 304 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 + +GKI + I++GD I+I Sbjct: 305 DSLSEEVGKI-------KVNGETDIKIGDRIRII 331 >gi|315659158|ref|ZP_07912022.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315495583|gb|EFU83914.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 362 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 63/350 (18%), Positives = 109/350 (31%), Gaps = 57/350 (16%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +L I+L +K N + + S + VV A G +I L G+ + + Sbjct: 1 MPKLNINLAKIKYNAQVLQSFLASKDINFTPVVTAIA---GDREILKVLKQVGLTEIADS 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 + R P +L +K I I V + + + +++ G +H Sbjct: 58 RL--ANIQRFGDPDVNFILLKSHAEDCDKEIIQHVKISVQTELTSIYRLNEVAQTLGTTH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC----ADDPSSHVNSVQ 178 L VD R G+ + L + H + K ++ + + A Q Sbjct: 116 QIVLMVDWKDGREGVLTYDVLQYLHEIMSLKHIKVIGLAFNFMSFKSEAPSDDDIFTMNQ 175 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHF------------QLTRPGISLYGGTDKI 226 F + G L S + P + G + G Sbjct: 176 ---FICAVEKELGYRLKLISGGNSSMLPQLMYNDLGKINDLRIGDTLFRGENTTSGQPMP 232 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 N Q +T EA+II I+ K + L A+ IGY D + + Sbjct: 233 NL---YQHAITLEAQIIEIKP---------RVNMKTKQSYLQAIVNIGYIDTVTNNIQPM 280 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 D + I+G + D M D+ + ++GD I Sbjct: 281 D-----------------KELKIIGASS-DYLMIDLNNQDGYQLGDTITF 312 >gi|255656805|ref|ZP_05402214.1| putative amino acid racemase [Clostridium difficile QCD-23m63] gi|296452364|ref|ZP_06894066.1| serine racemase [Clostridium difficile NAP08] gi|296877713|ref|ZP_06901741.1| serine racemase [Clostridium difficile NAP07] gi|296258793|gb|EFH05686.1| serine racemase [Clostridium difficile NAP08] gi|296431335|gb|EFH17154.1| serine racemase [Clostridium difficile NAP07] Length = 370 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 48/334 (14%), Positives = 92/334 (27%), Gaps = 24/334 (7%) Query: 12 DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL L+ N + + N + ++K IA NAG F V +++EG Sbjct: 14 DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLVGTLDEGE 69 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKLMSCGVSHPY 124 L + + + I + + + + Sbjct: 70 ALIKAGFEDIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKLECKL 129 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VD G +R G+ ++ ++ + ++ I SH SS Sbjct: 130 LIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPE-----GVPDV 184 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +E + + + + P + + I P V +I L Sbjct: 185 CVQEDSSMEKAYKALTDNGFNIEIVASGSTPTVEAEAVSKTITAVRPGNYVYYDAIQIGL 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ S + G G G S G Sbjct: 245 GCATEDMCALTVVCTVISKNSSGYYLIDCGSKCLGLDKGAHGNSSIVGYGRVCGHPELTI 304 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 + +GKI + I++GD I+I Sbjct: 305 DSLSEEVGKI-------KVNGETDIKIGDRIRII 331 >gi|126700435|ref|YP_001089332.1| putative amino acid racemase [Clostridium difficile 630] gi|115251872|emb|CAJ69707.1| putative amino acid racemase [Clostridium difficile] Length = 370 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 48/334 (14%), Positives = 91/334 (27%), Gaps = 24/334 (7%) Query: 12 DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL L+ N + + N + ++K IA NAG F V +++EG Sbjct: 14 DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLVGTLDEGE 69 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTN-----LIPVISSVPQLTFYSKLMSCGVSHPY 124 L + + + I + + + + Sbjct: 70 ALIKAGFEDIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECKL 129 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VD G +R G+ ++ ++ + ++ I SH SS Sbjct: 130 LIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPE-----GVPDV 184 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +E + + + + P + I P V +I L Sbjct: 185 CVQEDSSMEKAYKALTDNGFNIEIVASGSTPTVESEAACKTITAVRPGNYVYYDAIQIGL 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ S + G G G S G Sbjct: 245 GCATEDMCALTVVCTVISKNSSGYYLIDCGSKCLGLDKGAHGNSSIVGYGRVCGHPELTI 304 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 + +GKI + I++GD I+I Sbjct: 305 DSLSEEVGKI-------KVNGETDIKIGDRIRII 331 >gi|159044841|ref|YP_001533635.1| putative amino acid racemase [Dinoroseobacter shibae DFL 12] gi|157912601|gb|ABV94034.1| putative amino acid racemase [Dinoroseobacter shibae DFL 12] Length = 373 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 6/163 (3%) Query: 7 LRLKIDLTALKNNWHSMN-ALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL++DL +++N ++ L+ AV K G IA A+ G Sbjct: 4 PRLEVDLCKIRHNAQTLAGRLTPRGLGITAVTKAV---CGNPAIARAMLEGGAVGLAEAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP- 123 + +LR + ++ + + S + ++ S + Sbjct: 61 LRNVRRLREAGLTCAVTLIRTPMLSEAAEVVRLCETSFNSDLRVISALSAESCPRRAAHG 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 L V+ G R G+ +E L I ++ AC Sbjct: 121 IILMVEMGDLREGILPEELGALALRVRALPGVVLQGIGANFAC 163 >gi|239636176|ref|ZP_04677180.1| alanine racemase domain protein [Staphylococcus warneri L37603] gi|239598192|gb|EEQ80685.1| alanine racemase domain protein [Staphylococcus warneri L37603] Length = 359 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 107/334 (32%), Gaps = 35/334 (10%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+L+ ++ N + + + + + V+K A G ++ L + G+ F + Sbjct: 1 MANININLSKIQYNAKVLQTILDAKHIQFTPVIKSIA---GDRQVVQKLIDLGITHFADS 57 Query: 64 SVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 +E +R T +L Q + I + + + + +++ + Sbjct: 58 RLE---NIRQLTDFDCSFTILRSTQLSQLDNMIKNAQISIQTELNTILELNRIAEQLNLK 114 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLE 180 H L VD R G+ + + + N QL + + C + + Sbjct: 115 HQVILMVDWKDGREGVLTYDVVKYIETILNLSHIQLIGLSFNFMCFKSGTPIEDDVFMIN 174 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHF-QLTRPGISLYGGTDKINKSHPMQTVVTAE 239 +F + I G + S + P + L + G T V Sbjct: 175 KFVSAIEREIGYRMKIVSGGNSSMLPLTMYNDLGKINELRIGETLFRGVDTTTDKPV--- 231 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLI--AVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + L E++ + A+ IGY D D+ H + Sbjct: 232 SHLYQDAIVLEAEILEIKPRMNSHTKQSYLQAIVDIGYID--------TDTTHINPIAND 283 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVG 331 + I+G + D M D+ + ++G Sbjct: 284 IQ---------IIGASS-DHLMIDLNNQDHYQIG 307 >gi|254552528|ref|ZP_05142975.1| alanine racemase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 63 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 320 FDITDSLSIEVGDYIQIFGPDI----KLDDVALASGTTNYDLLVRIGTRYAKFY 369 D +L + GD +FGP I D A GT +Y+++ R + Y Sbjct: 4 VDWARALDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTY 57 >gi|170289049|ref|YP_001739287.1| alanine racemase domain-containing protein [Thermotoga sp. RQ2] gi|170176552|gb|ACB09604.1| alanine racemase domain protein [Thermotoga sp. RQ2] Length = 353 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 95/338 (28%), Gaps = 23/338 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+L ++ N + ++ V K LG + A L AG++ + Sbjct: 2 YPRLLINLKEIEENAKKVVEMASRRGIEIVGVTKVT---LGDPRFAETLRKAGIRILGES 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 ++ ++++ + +L + ++S + Sbjct: 59 RIKNVLRMKKAGIEGPFMLLRLPMMSELVEDVRHFDYIMVSDPDVAKKVDELSREIKRNV 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +D G R G+ ++A++ + + + + Sbjct: 119 KIIYMIDVGDLREGVWFEKAVEEIAQCKGANVVGIGTNFGCYGGIIPTREKFEILLDIKE 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF-----QLTRPGISLYGGTDKINKSHPMQTVVT 237 + ++ IE ++ L R G ++ G D N Sbjct: 179 KLEKNYGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAIVLGRDITNNRVIDWLSQD 238 Query: 238 AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + + V G + R I L +DS V Sbjct: 239 TFLIEAEVIEVKEKQSVPLGKRGLDVFGRKIEFVDRGIRKRAICALGEQDIDSRGLIPVD 298 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 G + + D + D+TD ++VGD Sbjct: 299 KGVEVLHA----------SSDHIVLDVTDFGDVKVGDV 326 >gi|148270325|ref|YP_001244785.1| alanine racemase domain-containing protein [Thermotoga petrophila RKU-1] gi|147735869|gb|ABQ47209.1| alanine racemase domain protein [Thermotoga petrophila RKU-1] Length = 353 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 95/338 (28%), Gaps = 23/338 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+L ++ N + ++ V K LG + A L AG++ + Sbjct: 2 YPRLLINLKEIEENAKKVVEMASRRGIEIVGVTKVT---LGDPRFAETLRKAGIKILGES 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 ++ ++++ + +L + ++S + Sbjct: 59 RIKNVLRMKKAGIEGPFMLLRLPMMSELVEDVRHFDYIMVSDPDVAKKVDELSREIKRNV 118 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +D G R G+ ++A++ + + + + Sbjct: 119 KIIYMIDVGDLREGVWFEKAVEEIAQCKGTNVVGIGANFGCYGGIIPTREKFEILLDIKE 178 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF-----QLTRPGISLYGGTDKINKSHPMQTVVT 237 + +H IE ++ L R G ++ G D N Sbjct: 179 KLEKNHGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAIVLGRDITNNRVIDWLSQD 238 Query: 238 AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + + V G + R I L +DS V Sbjct: 239 TFLIEAEVIEVKEKQSVPLGKKGLDVFGRKIEFVDRGIRKRAICALGEQDIDSRGLIPVD 298 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 G + + D + D+TD ++VGD Sbjct: 299 KGVEVLHA----------SSDHIVLDVTDFGDVKVGDV 326 >gi|254429781|ref|ZP_05043488.1| Alanine racemase, N-terminal domain family [Alcanivorax sp. DG881] gi|196195950|gb|EDX90909.1| Alanine racemase, N-terminal domain family [Alcanivorax sp. DG881] Length = 362 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 6/163 (3%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL I+L + +N + G+ A V K A LG IA A+ AG+ + Sbjct: 4 PRLDINLDKISHNARMLVEDLGDRGIAVTGVTKA-A--LGSLDIAKAMLRAGMSGLGDSR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 +E +R A I ++ Q + + I + + + + SH Sbjct: 61 IENIEAMRQQRISAPIMLIRSPMLSQVERVVRNADISFNTELSVVRRLSAAAEEAERSHG 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 L V+ G R G+ ++ + +L+ I ++LAC Sbjct: 121 IMLMVELGDLREGILPEDLVSAAREVMRLPNLELTGIGTNLAC 163 >gi|291166503|gb|EFE28549.1| amino acid racemase [Filifactor alocis ATCC 35896] Length = 370 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 100/346 (28%), Gaps = 20/346 (5%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKD-NAYGLGCEKIAPALYNAGVQ 58 ++ ++I+L L N ++ VVK ++Y I+ L +AG Sbjct: 3 KKIQYPIMEINLNHLYENAKNIVEQCKKHGISVTGVVKGTDSYEHSYNTISNTLLDAGCT 62 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + + +++R Y + R+ +L + + + SS+ L ++ Sbjct: 63 SIADSRMNTIIQMRNYGFEGRLLLLRVPMISELDDVVHYADCSLQSSLTVLEKTNETASK 122 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDF---THNSFNKKLGQLSLIISHLACADDPSSHV 174 + H L +D G R G + L K L + + Sbjct: 123 HNIIHDVILMMDLGDLREGFFDENELIHVASIVEKKMKHLHLKGIGTNLGCYGSIRPDTS 182 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGP-------NYHFQLTRPGISLYGGTDKIN 227 N +L I + G + + S P R G + D I+ Sbjct: 183 NLGRLVSIAEKIEFHIGRKLEIISGGATSSLPLVLNGSIPKRINHLRVGEGIVLSRDLID 242 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 + + + I E SY G L Sbjct: 243 IWNIDMPFMHKDVYTISAEVIEVREKPSYPIGTIFV--DAFGNKPEYIDKGIRKKA--LL 298 Query: 288 SEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGD 332 + V +K I+G + D + DI D I+ GD Sbjct: 299 AIGKRDVGSVDSLIVKLENAEIIGGSS-DHLILDIEDVKEDIKEGD 343 >gi|228474827|ref|ZP_04059558.1| alanine racemase domain protein [Staphylococcus hominis SK119] gi|228271490|gb|EEK12858.1| alanine racemase domain protein [Staphylococcus hominis SK119] Length = 353 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 129/373 (34%), Gaps = 49/373 (13%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+ I+L+ ++ N H + L S N V+K A G E I L G F + Sbjct: 1 MSRIVINLSKIEYNAHVLKMLFDSKNIAIIPVIKSIA---GDEHIIKRLMKVGFNYFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E + +T + +L Q + + + + + + + + + + + Sbjct: 58 RLENIPQ--QFTKDCQFLLLRSPLKRQYEDLIKESYVSIQTEMVTIRQLNHIATEMSHQH 115 Query: 124 YAL-QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181 + VD R G+ + +++ + +L + + C + +N + ++ + Sbjct: 116 QVILMVDWKDQREGVLPYDIVEYINEIKLMNNIKLLGLAFNFMCFKSKAPTLNDIDEINQ 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F + + G+ + S + P + L G T Sbjct: 176 FVHHVQYETGVSFEVISGGNSSMLPLLKQYDLGCINELRIGETLFRGVDTTTNE---NIP 232 Query: 241 RIILIRKALAGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + L E++ + K L A+ +GY D +V K Sbjct: 233 ELFQNAILLEAEIIEIKPRYTKTKESYLQAIVDVGYID---------------TVIEKIK 277 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLV 359 + + I+G + D M D+ + ++ +VGD +F L+ Y+ L Sbjct: 278 PL--NHRIEIMGASS-DHLMIDLKEEINYKVGD-CILF----SLE----------YEALS 319 Query: 360 RI--GTRYAKFYT 370 ++ R K+Y+ Sbjct: 320 QLMYHQRMEKYYS 332 >gi|220932749|ref|YP_002509657.1| alanine racemase domain protein [Halothermothrix orenii H 168] gi|219994059|gb|ACL70662.1| alanine racemase domain protein [Halothermothrix orenii H 168] Length = 357 Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 57/351 (16%), Positives = 110/351 (31%), Gaps = 32/351 (9%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M + R+ I+L ++ N N VVK A G K+ AG+ Sbjct: 1 MKT---PRVNINLPRIRENASIFNRKCQQQGISLTGVVKVMA---GDLKVIKTFVQAGLT 54 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + + K+R + +L + + + I + S V + S+ Sbjct: 55 SLGDSRLYNLKKIREAGIGVELMLLRLPRLDEVSDVIKYSDISLNSEVTVIEALSREAIK 114 Query: 119 -GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NS 176 SH + VD G R G+ ++ +F + + + +++ C N+ Sbjct: 115 VNRSHDIIVMVDVGDLREGVLPEDISEFFGKIIDLPGINIKGLGTNVGCYGGVLPTYKNT 174 Query: 177 VQLERFRTLISHYKGIEASLASSSG--------ILLGPNYHFQLTRPGISLYGGTDKINK 228 L + + G+ + S P+ L L G N+ Sbjct: 175 NLLIELKEKMEVKYGVHLPVISGGNSATTYLLDRNELPSGVNNLRVGEGILRGVYPTFNE 234 Query: 229 --SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 Q +T A II ++ + ++ RD+ G Sbjct: 235 IIEGVNQNCITLTASIIEVKD------KPSVPRGRIGRDA-FGNKPRFEDRGIRRRAILA 287 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336 + G V ++G + D + DIT++ + VGD ++ Sbjct: 288 VGRQDVKISGLDPVL-DG--VEVIGASS-DHLIVDITEARYDLSVGDELEF 334 >gi|325001373|ref|ZP_08122485.1| alanine racemase [Pseudonocardia sp. P1] Length = 47 Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALY 53 +DL A+++N ++ L+ A T VVK + YG G +A A Sbjct: 2 VDLDAVRHNVAYLSGLAARSGAATMVVVKADGYGHGAAGVARAAL 46 >gi|314922754|gb|EFS86585.1| alanine racemase protein [Propionibacterium acnes HL001PA1] Length = 362 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 113/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + GV Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGV 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVHLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVN 175 G H + VD G R G+ +D ++ + + ++LAC S N Sbjct: 116 RAGTHHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSIEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHF-------------QLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D H +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGHI-----------------VLGASS-DHLIVDMTDSSESVEIGTEVRFW 337 >gi|282852965|ref|ZP_06262302.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J139] gi|282582418|gb|EFB87798.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J139] gi|314983015|gb|EFT27107.1| alanine racemase protein [Propionibacterium acnes HL110PA3] gi|315091522|gb|EFT63498.1| alanine racemase protein [Propionibacterium acnes HL110PA4] Length = 362 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 60/360 (16%), Positives = 112/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + GV Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGV 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVN 175 G H + VD R G+ +D ++ + + ++LAC S N Sbjct: 116 RAGTHHGVIVMVDVSDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSIEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------------FQLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D H +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGHI-----------------VLGASS-DHLIVDMTDSSESVEIGTEVRFW 337 >gi|314965673|gb|EFT09772.1| alanine racemase protein [Propionibacterium acnes HL082PA2] gi|315094623|gb|EFT66599.1| alanine racemase protein [Propionibacterium acnes HL060PA1] gi|315105342|gb|EFT77318.1| alanine racemase protein [Propionibacterium acnes HL050PA2] gi|327328854|gb|EGE70614.1| amino acid racemase [Propionibacterium acnes HL103PA1] Length = 362 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 113/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + GV Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGV 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVN 175 G H + VD G R G+ +D ++ + + ++LAC S N Sbjct: 116 RAGTHHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSIEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------------FQLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D H +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGHI-----------------VLGASS-DHLIVDMTDSSESVEIGTEVRFW 337 >gi|319400063|gb|EFV88301.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis FRI909] Length = 353 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 41/339 (12%), Positives = 101/339 (29%), Gaps = 41/339 (12%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++++L+ +K N + +L V+K A G + I ++ + G+ F + Sbjct: 1 MANVRVNLSKIKYNAKVLQSLLECKQIHFTPVIKCVA---GDKHIVSSIKSLGITHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++ +L+ + + + + + + + + + L + H Sbjct: 58 RLDNIEQLKDLGITFTLL--RPTVEADLEKMISRVEMSIQTELTTIKKLNTLAKSLDIKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + + + QL + + C + + + + + Sbjct: 116 QIMLMVDWKDGREGVLTYDVVRYVQEILKLSHIQLVGLAFNFMCFKSEAPNEKDVRMINK 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F + + + S + P + + R Sbjct: 176 FIHDVESETHFKFRIISGGNSSMLPQTLYNHLD---------------------KINDLR 214 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300 I ++ V + P + + ++ G Sbjct: 215 IGEALLRGIDTTTNHSINSL---YQNAIVLEAEIIEIKPRLYQKNNQSYLQAIVDIGYLD 271 Query: 301 -FIKGYM-----VPILGKITMDMTMFDITDSLSIEVGDY 333 FI+G + ILG + D M D+ + ++GD Sbjct: 272 TFIEGIKPLGDDIRILGASS-DHLMIDLNNQDHYQIGDK 309 >gi|242399214|ref|YP_002994638.1| putative amino acid racemase [Thermococcus sibiricus MM 739] gi|242265607|gb|ACS90289.1| putative amino acid racemase [Thermococcus sibiricus MM 739] Length = 375 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 97/344 (28%), Gaps = 36/344 (10%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + +DL L+ N + + N + +VK +A AG F +++ Sbjct: 12 VVVDLDKLEFNIKEVAKEAKKHNKQLFPMVKT----HKSVYVANLQKKAGAGGFLCGTID 67 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDT------NLIPVISSVPQLTFY-SKLMSCG 119 E L + + Y I + +I I SV F ++L G Sbjct: 68 EAEALAEAGLGETLMLAYPIMDKENFSRVARLIEDGLRVIFRIDSVDAAEFLDAELKKRG 127 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH----VN 175 + + + VDTG R G+ ++ +F + I +H + ++ Sbjct: 128 LRAEFTIIVDTGGVRYGIEPEKVGNFAKRVKEYSNLEFVGITTHPGHVYNATNPKEVKAI 187 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTR--PGISLYGGTDKINKSHPMQ 233 + Q + + GI P + F + G ++ + Sbjct: 188 AEQATKGMKIALRSLRQWNMNPEIVGIGSTPTFRFDIEEEIYTHLFPGNYVYYDRQQALI 247 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 R L + G L S Sbjct: 248 FGSANLERCALTIFVTV-------TSIAERCGKRFGLINAGSLYFDKRGHEILGSFGQAV 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 + K +GKI D+T+ ++VG+ I + Sbjct: 301 EYPRAKLIGLSQE---VGKI-------DVTNEPDVKVGEKINVI 334 >gi|294616334|ref|ZP_06696127.1| alanine racemase [Enterococcus faecium E1636] gi|291590848|gb|EFF22564.1| alanine racemase [Enterococcus faecium E1636] Length = 48 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 17/31 (54%) Query: 33 AAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 AVVK NAYG G +A L GV +F V Sbjct: 1 MAVVKANAYGHGAIPVAKTLQKIGVMNFAVA 31 >gi|314969166|gb|EFT13264.1| alanine racemase protein [Propionibacterium acnes HL037PA1] Length = 362 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + G+ Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGI 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-N 175 G H + VD G R G+ +D ++ + + ++LAC V N Sbjct: 116 RAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSVEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------------FQLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D + +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGNI-----------------VLGASS-DHIIVDMTDSSESVEIGTEVRFW 337 >gi|242244000|ref|ZP_04798443.1| amino acid racemase [Staphylococcus epidermidis W23144] gi|242232633|gb|EES34945.1| amino acid racemase [Staphylococcus epidermidis W23144] Length = 353 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 41/339 (12%), Positives = 101/339 (29%), Gaps = 41/339 (12%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++++L+ +K N + +L V+K A G + I ++ + G+ F + Sbjct: 1 MANVRVNLSKIKYNAKVLQSLLECKQIHFTPVIKCVA---GDKHIVSSIKSLGITHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++ +L+ + + + + + + + + + L + H Sbjct: 58 RLDNIEQLKDLGITFTLL--RPTVKADLEKMISRVEMSIQTELTTIKKLNTLAKSLDIKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + + + QL + + C + + + + + Sbjct: 116 QIMLMVDWKDGREGVLTYDVVRYVQEILKLSHIQLVGLAFNFMCFKSEAPNEKDVRMINK 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F + + + S + P + + R Sbjct: 176 FIHDVESETHFKFRIISGGNSSMLPQTLYNHLD---------------------KINDLR 214 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG- 300 I ++ V + P + + ++ G Sbjct: 215 IGEALLRGIDTTTNHSINSL---YQNAIVLEAEIIEIKPRIYQKNNQSYLQAIVDIGYLD 271 Query: 301 -FIKGYM-----VPILGKITMDMTMFDITDSLSIEVGDY 333 FI+G + ILG + D M D+ + ++GD Sbjct: 272 TFIEGIKPLGDDIRILGASS-DHLMIDLNNQDHYQIGDK 309 >gi|254430666|ref|ZP_05044369.1| amino acid racemase [Cyanobium sp. PCC 7001] gi|197625119|gb|EDY37678.1| amino acid racemase [Cyanobium sp. PCC 7001] Length = 369 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 59/350 (16%), Positives = 105/350 (30%), Gaps = 25/350 (7%) Query: 7 LRLKIDLTALKNNWHSM-NALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL+I+L+ L +N ++ L+ V K LG +I AG+ + Sbjct: 4 PRLEINLSHLHHNARTLVRRLARQGIAVTGVSKAV---LGMPEIVRTWLAAGLGSIGESR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSHP 123 ++ L QA + ++ Q + I + L + G H Sbjct: 61 LDTAEALARGGLQAPLLMIRTPMLSQVARVVAHAAISCNTEPRVLEALAVAARKQGRRHG 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLERF 182 L V+ G R G+ + + QL I S+L C N +L Sbjct: 121 VLLMVELGDLREGILPGDLERIAQLTLALPSLQLVGIGSNLGCQHGVAPDAANMAELSEL 180 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF-------QLTRPGISLYGGTDKINKSHPMQTV 235 + L S P R G +L G + + +S Sbjct: 181 AETLEARLSTRLQLISGGNSANLPWLAQGGAPGRINHLRLGEALLLGREPLGRSAIPGLH 240 Query: 236 VTAEARIILIRKALAGELVSYGGQKKLT--RDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 A + + + +++G + + A D L L + S Sbjct: 241 TNAFRLVGEVIEVKTKPGLAWGSRGLTSFMAPGGPAGLPCHDRDPRQRGLLALGVQDSDP 300 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKL 343 L + I+G + D + + + VG+ + FGP Sbjct: 301 AGLEPPPGVA-----IVGASS-DHLV--LESLHPLTVGEEVG-FGPSYSA 341 >gi|15644345|ref|NP_229397.1| hypothetical protein TM1597 [Thermotoga maritima MSB8] gi|281412630|ref|YP_003346709.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10] gi|4982168|gb|AAD36664.1|AE001804_8 hypothetical protein TM_1597 [Thermotoga maritima MSB8] gi|281373733|gb|ADA67295.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10] Length = 354 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 92/338 (27%), Gaps = 23/338 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + RL I+L ++ N + ++ V K LG + A L AG+ + Sbjct: 3 YPRLLINLKEIEENARKVVEMASRRGIEIVGVTKVT---LGDPRFAETLRKAGIGILGES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-QLTFYSKLMSCGVSH 122 + ++++ + +L + ++S + Sbjct: 60 RIRNVLRMKKAGIEGPFMLLRLPMMSELVEDVKHFDYIMVSDPDVAKKVDELSREMKRNV 119 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 +D G R G+ ++A++ + + + + Sbjct: 120 KIIYMIDVGDLREGVWFEKAVEEIAQCRGANIVGIGTNFGCYGGIIPTREKFEILLDIKE 179 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHF-----QLTRPGISLYGGTDKINKSHPMQTVVT 237 + +H IE ++ L R G ++ G D N Sbjct: 180 KLEKNHGFNIEIVSGGNTPALYALENGEIPEGINQLRIGEAIVLGRDITNNRVIDWLSQN 239 Query: 238 AEARIILIRKALAGELVSYGGQ--KKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + + V G + R I L +DS V Sbjct: 240 TFLIEAEVIEVKEKPSVPLGKRGLDVFGRKVDFVDRGIRKRAICALGEQDIDSRGLIPVD 299 Query: 296 LGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 G + + D + D+TD ++VGD Sbjct: 300 KGVEVLHA----------SSDHIVLDVTDFGDVKVGDV 327 >gi|226320649|ref|ZP_03796207.1| Alanine racemase [Borrelia burgdorferi 29805] gi|226233865|gb|EEH32588.1| Alanine racemase [Borrelia burgdorferi 29805] Length = 57 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 M++T+ +I L ++ G ++I + +D+++ S ++Y+LL IG + Y Sbjct: 1 MNLTIVEIPKDLKVKTGSKVEIVSEKLSIDEMSKFSKRSHYELLCNIGKYEKRKY 55 >gi|50843719|ref|YP_056946.1| amino acid racemase [Propionibacterium acnes KPA171202] gi|289424481|ref|ZP_06426264.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes SK187] gi|289427473|ref|ZP_06429186.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J165] gi|295131808|ref|YP_003582471.1| alanine racemase [Propionibacterium acnes SK137] gi|50841321|gb|AAT83988.1| amino acid racemase [Propionibacterium acnes KPA171202] gi|289155178|gb|EFD03860.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes SK187] gi|289159403|gb|EFD07594.1| alanine racemase, N-terminal domain protein [Propionibacterium acnes J165] gi|291377238|gb|ADE01093.1| alanine racemase [Propionibacterium acnes SK137] gi|313765110|gb|EFS36474.1| alanine racemase protein [Propionibacterium acnes HL013PA1] gi|313771045|gb|EFS37011.1| alanine racemase protein [Propionibacterium acnes HL074PA1] gi|313806767|gb|EFS45265.1| alanine racemase protein [Propionibacterium acnes HL087PA2] gi|313812017|gb|EFS49731.1| alanine racemase protein [Propionibacterium acnes HL083PA1] gi|313815642|gb|EFS53356.1| alanine racemase protein [Propionibacterium acnes HL059PA1] gi|313817559|gb|EFS55273.1| alanine racemase protein [Propionibacterium acnes HL046PA2] gi|313821614|gb|EFS59328.1| alanine racemase protein [Propionibacterium acnes HL036PA1] gi|313824440|gb|EFS62154.1| alanine racemase protein [Propionibacterium acnes HL036PA2] gi|313826787|gb|EFS64501.1| alanine racemase protein [Propionibacterium acnes HL063PA1] gi|313832451|gb|EFS70165.1| alanine racemase protein [Propionibacterium acnes HL007PA1] gi|313833426|gb|EFS71140.1| alanine racemase protein [Propionibacterium acnes HL056PA1] gi|314916131|gb|EFS79962.1| alanine racemase protein [Propionibacterium acnes HL005PA4] gi|314917393|gb|EFS81224.1| alanine racemase protein [Propionibacterium acnes HL050PA1] gi|314921734|gb|EFS85565.1| alanine racemase protein [Propionibacterium acnes HL050PA3] gi|314926090|gb|EFS89921.1| alanine racemase protein [Propionibacterium acnes HL036PA3] gi|314930664|gb|EFS94495.1| alanine racemase protein [Propionibacterium acnes HL067PA1] gi|314955412|gb|EFS99817.1| alanine racemase protein [Propionibacterium acnes HL027PA1] gi|314959411|gb|EFT03513.1| alanine racemase protein [Propionibacterium acnes HL002PA1] gi|314961737|gb|EFT05838.1| alanine racemase protein [Propionibacterium acnes HL002PA2] gi|314975116|gb|EFT19211.1| alanine racemase protein [Propionibacterium acnes HL053PA1] gi|314977526|gb|EFT21621.1| alanine racemase protein [Propionibacterium acnes HL045PA1] gi|314979916|gb|EFT24010.1| alanine racemase protein [Propionibacterium acnes HL072PA2] gi|314985127|gb|EFT29219.1| alanine racemase protein [Propionibacterium acnes HL005PA1] gi|314986878|gb|EFT30970.1| alanine racemase protein [Propionibacterium acnes HL005PA2] gi|314990741|gb|EFT34832.1| alanine racemase protein [Propionibacterium acnes HL005PA3] gi|315082993|gb|EFT54969.1| alanine racemase protein [Propionibacterium acnes HL027PA2] gi|315086526|gb|EFT58502.1| alanine racemase protein [Propionibacterium acnes HL002PA3] gi|315087930|gb|EFT59906.1| alanine racemase protein [Propionibacterium acnes HL072PA1] gi|315096843|gb|EFT68819.1| alanine racemase protein [Propionibacterium acnes HL038PA1] gi|315099426|gb|EFT71402.1| alanine racemase protein [Propionibacterium acnes HL059PA2] gi|315102402|gb|EFT74378.1| alanine racemase protein [Propionibacterium acnes HL046PA1] gi|315109679|gb|EFT81655.1| alanine racemase protein [Propionibacterium acnes HL030PA2] gi|327333045|gb|EGE74777.1| amino acid racemase [Propionibacterium acnes HL096PA2] gi|327334038|gb|EGE75753.1| amino acid racemase [Propionibacterium acnes HL096PA3] gi|327444334|gb|EGE90988.1| alanine racemase protein [Propionibacterium acnes HL013PA2] gi|327446807|gb|EGE93461.1| alanine racemase protein [Propionibacterium acnes HL043PA2] gi|327448753|gb|EGE95407.1| alanine racemase protein [Propionibacterium acnes HL043PA1] gi|327455094|gb|EGF01749.1| alanine racemase protein [Propionibacterium acnes HL087PA3] gi|327456230|gb|EGF02885.1| alanine racemase protein [Propionibacterium acnes HL083PA2] gi|328755929|gb|EGF69545.1| alanine racemase protein [Propionibacterium acnes HL087PA1] gi|328757655|gb|EGF71271.1| alanine racemase protein [Propionibacterium acnes HL020PA1] gi|328759000|gb|EGF72616.1| alanine racemase protein [Propionibacterium acnes HL025PA2] gi|328759900|gb|EGF73489.1| amino acid racemase [Propionibacterium acnes HL099PA1] gi|332676673|gb|AEE73489.1| putative amino acid racemase [Propionibacterium acnes 266] Length = 362 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + G+ Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGI 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-N 175 G H + VD G R G+ +D ++ + + ++LAC V N Sbjct: 116 RAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGGVQPSVEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------------FQLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D + +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGNI-----------------VLGASS-DHLIVDMTDSSESVEIGTEVRFW 337 >gi|313835054|gb|EFS72768.1| alanine racemase protein [Propionibacterium acnes HL037PA2] gi|314929024|gb|EFS92855.1| alanine racemase protein [Propionibacterium acnes HL044PA1] gi|314970966|gb|EFT15064.1| alanine racemase protein [Propionibacterium acnes HL037PA3] gi|328905713|gb|EGG25489.1| amino acid racemase [Propionibacterium sp. P08] Length = 362 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 109/354 (30%), Gaps = 45/354 (12%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIA-PALYNAGVQDFFVT 63 RL+I + +N ++ + AAV K L + AL + G+ + Sbjct: 6 PRLEIFADRIHDNAQTIVNQCAEHGVQVAAVTKV----LHAHPVLLRALDDTGITMLADS 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++ ++ +L I + SS+ +T S G H Sbjct: 62 RLQNLRQIAACGTPLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSDAAVRAGTRH 121 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLER 181 + VD G R G+ +D ++ + + + ++LAC V N +L + Sbjct: 122 GVIVMVDVGDLREGVWPDHLVDVVSSAAALRGIDVKGVGTNLACYGGVQPSVENMTRLVQ 181 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHF-------------QLTRPGISLYGGTDKINK 228 R + G+E L S P + G + + Sbjct: 182 LRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDRSPWPQT 241 Query: 229 SHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADGYPLTLS 284 VV + G R + A+ +G D P L+ Sbjct: 242 RQDAVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDVNPSDLT 301 Query: 285 GLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 +D H +LG + D + D+TDS +E+G ++ + Sbjct: 302 PVDPGHI-----------------VLGASS-DHLIVDVTDSAESVEIGTEVRFW 337 >gi|315107296|gb|EFT79272.1| alanine racemase protein [Propionibacterium acnes HL030PA1] Length = 362 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + G+ Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGI 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-N 175 G H + VD G R G+ +D ++ + + ++LAC V N Sbjct: 116 RAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSAAALPGIDVKGVGTNLACYGRVQPSVEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------------FQLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSEINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D + +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGNI-----------------VLGASS-DHLIVDMTDSSESVEIGTEVRFW 337 >gi|313813900|gb|EFS51614.1| alanine racemase protein [Propionibacterium acnes HL025PA1] Length = 362 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 46/360 (12%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGV 57 M+ + RL+I +++N ++ + AAV K L + AL + G+ Sbjct: 1 MNRST-PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGI 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + ++ ++ +L I + SS+ +T S+ Sbjct: 56 TMLADSRLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAV 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-N 175 G H + VD G R G+ +D ++ + + ++LAC V N Sbjct: 116 RAGTRHGVIVMVDVGDLREGVWPDHLVDVVSSATALPGIDVKGVGTNLACYGGVQPSVEN 175 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYH-------------FQLTRPGISLYGG 222 +L + R + G+E L S P + G + Sbjct: 176 MTRLVQLRDMARAATGLELGLISGGNSANLPLMMSGAMPSKINNLRIGEAIILGRNTLDR 235 Query: 223 TDKINKSHPMQTVVTAEARIILIRKALAGELVS---YGGQKKLTRDSLI-AVAAIGYADG 278 + VV + G R + A+ +G D Sbjct: 236 SPWPQTRQDTVEVVAEIIELERKPSIPLGRTGEDAFGQHVTFTDRGIRLRAICNLGRQDV 295 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQIF 337 P L+ +D + +LG + D + D+TDS +E+G ++ + Sbjct: 296 NPSDLAPVDPGNI-----------------VLGASS-DHLIVDMTDSSESVEIGTEVRFW 337 >gi|320533685|ref|ZP_08034304.1| hypothetical protein HMPREF9057_02194 [Actinomyces sp. oral taxon 171 str. F0337] gi|320134080|gb|EFW26409.1| hypothetical protein HMPREF9057_02194 [Actinomyces sp. oral taxon 171 str. F0337] Length = 61 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 11/49 (22%) Query: 332 DYIQIFGPD-----------IKLDDVALASGTTNYDLLVRIGTRYAKFY 369 D ++G D+ A GT NY+++ R+G R + Y Sbjct: 1 DAAVLWGAPEHGGVSDPEAVPTADEWAQVCGTINYEIVTRLGARVPRCY 49 >gi|255101991|ref|ZP_05330968.1| putative amino acid racemase [Clostridium difficile QCD-63q42] gi|255307859|ref|ZP_05352030.1| putative amino acid racemase [Clostridium difficile ATCC 43255] Length = 370 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 47/334 (14%), Positives = 91/334 (27%), Gaps = 24/334 (7%) Query: 12 DLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL L+ N + + N + ++K IA NAG F +++EG Sbjct: 14 DLDQLEKNIDKIQQICTNNNKQLWPMLKT----HKSTYIARLQKNAGASGFLAGTLDEGE 69 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKLMSCGVSHPY 124 L + + + I + + + + Sbjct: 70 ALIKAGFEDIMLAYPYMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECKL 129 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 + VD G +R G+ ++ ++ + ++ I SH SS Sbjct: 130 LIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPE-----GVPDV 184 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + +E + + + + P + + I P V +I L Sbjct: 185 CVQEDSSMEKAYKALTDNGFNIEIVASGSTPTVESEAASKTITAVRPGNYVYYDAIQIGL 244 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 ++ S + G G G S G Sbjct: 245 GCATEDMCALTVVCTVISKNSSGYYLIDCGSKCLGLDKGAHGNSSIVGYGRVCGHPELTI 304 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 + +GKI + I++GD I+I Sbjct: 305 DSLSEEVGKI-------KVNGETDIKIGDRIRII 331 >gi|168179710|ref|ZP_02614374.1| alanine racemase, N-terminal domain protein [Clostridium botulinum NCTC 2916] gi|182669204|gb|EDT81180.1| alanine racemase, N-terminal domain protein [Clostridium botulinum NCTC 2916] Length = 353 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 68/364 (18%), Positives = 118/364 (32%), Gaps = 48/364 (13%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AV K G KIA A+ V Sbjct: 2 SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q + + I ++S + + S+ Sbjct: 59 SRIENLKKL--VHINLPKMLLRLPMISQVEEVVKYTDISLVSDIITIRELSREAIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + N K +L I ++L+C N QL Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYITVKEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQL 176 Query: 180 ERFRTLISHYKGIEASLA---SSSGILLGPNYHF----QLTRPGISL---YGGTDKINKS 229 + I + I+ + +S I L + R G S+ G D+ + Sbjct: 177 VNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIEP 236 Query: 230 H--PMQTVVTAEARIILIRKALAGE----LVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 +V + G + A+ AIG D P L Sbjct: 237 LLKDAFKLVAEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPDNL 296 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---FGP 339 +D S +LG + D + DIT+ ++GD I+ FG Sbjct: 297 IPIDDNIS-----------------VLGASS-DHLLLDITNCNKDYKIGDKIEFNVTFGG 338 Query: 340 DIKL 343 + + Sbjct: 339 CLSV 342 >gi|329769055|ref|ZP_08260477.1| hypothetical protein HMPREF0433_00241 [Gemella sanguinis M325] gi|328839546|gb|EGF89122.1| hypothetical protein HMPREF0433_00241 [Gemella sanguinis M325] Length = 317 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 97/303 (32%), Gaps = 29/303 (9%) Query: 48 IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP 107 ++ AG+ F T EE +R + + + +++ N+ I+++ Sbjct: 1 MSKFFSEAGINYFATTKEEECKIIRETLGE-EVSIFLLNPTRDFELVRKYNIEVNIANL- 58 Query: 108 QLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA 167 + + + L+ R G + + N + L SH + A Sbjct: 59 --DYLKENIDELRDLTLQLEFAGSMRRAGAKTLDEVLEIINFCKENNLNLKGFWSHFSFA 116 Query: 168 DDPSSHVNSVQ---LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRP-GISLYGGT 223 D+ + L+ + + L +S+ L + + GI LYG Sbjct: 117 DEFDGFYEKEKELVLKVSEEALKIHDFEVVHLQNSASFLRDGAFEKTTHQRLGIILYGAL 176 Query: 224 DKINK-------SHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYA 276 K + ++ +T I+ I GE + Y +D + V IGY Sbjct: 177 PYDVKQYSVALPNLVIKNPITVYGEIVNIVDLKEGECIGYSNAYIAEKDKKVGVVNIGYG 236 Query: 277 DGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 DG G I I + M + +I++ ++GD + + Sbjct: 237 DGILR-----------DRLRGNTCIINNKEKDIYATM-MSHLVVEISEKE--KIGDKVFL 282 Query: 337 FGP 339 + Sbjct: 283 YDD 285 >gi|226307544|ref|YP_002767504.1| hypothetical protein RER_40570 [Rhodococcus erythropolis PR4] gi|226186661|dbj|BAH34765.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 597 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 7/204 (3%) Query: 7 LRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DL ++ N + + + A V K G K+A A+ GV + Sbjct: 4 PTITVDLRRIEQNARVLVEASNAKGIEVAGVSKST---CGSPKVARAMVRGGVAQIADSR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 ++ ++R + ++ + I + S + + ++ GV H Sbjct: 61 LDNLARIRRDGITVPLMLIRAPSLNEIDDTIRYADISLNSELTTIVALGRAALTRGVIHD 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERF 182 L +D G R G+ EALD + +L I ++LAC V N L Sbjct: 121 IVLMIDLGDLREGILPAEALDVVAEILPIEGIRLIGIGANLACVGGIQPTVDNLSNLVYI 180 Query: 183 RTLISHYKGIEASLASSSGILLGP 206 I+ IE + S P Sbjct: 181 ADEITKRFSIELPIVSGGNTFSLP 204 >gi|158320722|ref|YP_001513229.1| alanine racemase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140921|gb|ABW19233.1| alanine racemase domain protein [Alkaliphilus oremlandii OhILAs] Length = 354 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 104/341 (30%), Gaps = 26/341 (7%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+ I L+ LK+N + L AAV K + G +IA A + G + + Sbjct: 3 PRIDIHLSKLKHNTKIITDLCKEKGIEVAAVTKGFS---GISEIAQAYVDGGARYLADSR 59 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 +E KL+ + + + L Q + I + S + + + G H Sbjct: 60 IENLKKLKDISIEKIMLRL--PMTSQVEETVAYADISLNSELETIVALNNAAEKLGKIHK 117 Query: 124 YALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLER 181 + VD G R G + E D + ++ + ++L C N +L Sbjct: 118 IIIMVDLGDLREGFFDEVELEDALLKMKKLQNIKVIGVGTNLTCYGGVIPDETNLGKLVE 177 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLT-------RPGISLYGGTDKINKSHPMQT 234 + I + + S R G +L G + T Sbjct: 178 YGEKIEKVLDTKLEIISGGNSSSFHLLEQDRIPKKINNLRLGETLLLGREAAYGELIENT 237 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 + I + + RD+ + + + + + Sbjct: 238 HHDVFQLVAEIIEIKDK---PSHPIGTIGRDAFWNIPVFEDKGIMKRAILAVGRQDTAGA 294 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYI 334 + + +LG + D + DIT +VGD I Sbjct: 295 SIE-PV---DKNIDVLGASS-DHLIIDITHCDREYKVGDEI 330 >gi|167949694|ref|ZP_02536768.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 62 Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 11/68 (16%) Query: 251 GELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL 310 V YGG + +AV +GY DGYP V G ++G +P++ Sbjct: 1 MTAVGYGGSYRCPEPMPVAVIGVGYGDGYPRH-----------VPGGTPVLLRGRRLPLV 49 Query: 311 GKITMDMT 318 G+++MDM Sbjct: 50 GRVSMDMI 57 >gi|322806269|emb|CBZ03837.1| putative cytoplasmic protein [Clostridium botulinum H04402 065] Length = 353 Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 68/364 (18%), Positives = 118/364 (32%), Gaps = 48/364 (13%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AV K G KIA A+ V Sbjct: 2 SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q + + I ++S + + S+ Sbjct: 59 SRIENLKKL--VHISLPKMLLRLPMISQVEEVVKYTDISLVSDIITIRELSREAIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + N K +L I ++L+C N QL Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYIAVKEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQL 176 Query: 180 ERFRTLISHYKGIEASLA---SSSGILLGPNYHF----QLTRPGISL---YGGTDKINKS 229 + I + I+ + +S I L + R G S+ G D+ + Sbjct: 177 VNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIEP 236 Query: 230 H--PMQTVVTAEARIILIRKALAGE----LVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 +V + G + A+ AIG D P L Sbjct: 237 LLKDAFKLVAEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPDNL 296 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---FGP 339 +D S +LG + D + DIT+ ++GD I+ FG Sbjct: 297 IPIDDNIS-----------------VLGASS-DHLLLDITNCNKDYKIGDKIEFNVTFGG 338 Query: 340 DIKL 343 + + Sbjct: 339 CLSV 342 >gi|213620646|ref|ZP_03373429.1| alanine racemase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 40 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 331 GDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYA 366 G ++++G +IK+DDVA A+GT Y LL + R Sbjct: 1 GTPVELWGKEIKVDDVASAAGTLGYGLLCAVAPRVP 36 >gi|153939293|ref|YP_001391327.1| alanine racemase domain-containing protein [Clostridium botulinum F str. Langeland] gi|170755259|ref|YP_001781566.1| alanine racemase domain-containing protein [Clostridium botulinum B1 str. Okra] gi|152935189|gb|ABS40687.1| alanine racemase, N-terminal domain protein [Clostridium botulinum F str. Langeland] gi|169120471|gb|ACA44307.1| alanine racemase, N-terminal domain protein [Clostridium botulinum B1 str. Okra] gi|295319356|gb|ADF99733.1| alanine racemase, N-terminal domain protein [Clostridium botulinum F str. 230613] Length = 353 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 10/202 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AAV K G KIA A+ V Sbjct: 2 SYPRVEVDTKKIRYNTKILVEECKKRGIKVAAVTKTF---CGNPKIAKAIAEEEVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q + + I ++S + + SK Sbjct: 59 SRIENLKKL--VHINLPKMLLRLPMISQVEEVVKYTDISLVSDIITIRELSKEAIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + N K +L I ++L+C N QL Sbjct: 117 HSVILMIDLGDLREGIFNEEEIYITVEEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQL 176 Query: 180 ERFRTLISHYKGIEASLASSSG 201 + I + I+ + S Sbjct: 177 VNIKKNIENKFNIKIEVISGGN 198 >gi|163740750|ref|ZP_02148143.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis 2.10] gi|161385741|gb|EDQ10117.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis 2.10] Length = 373 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 6/163 (3%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+KIDL +++N + V K G +A A+ + G Sbjct: 4 PRIKIDLHKIRDNTRCLVERLKPLGITVTGVTKGVC-GH--PGVARAMLDGGAIGLADAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123 + ++R I ++ Q I +T + + + G+SH Sbjct: 61 LANVRRMRKAGLTCPILMIRTPMLSQAGQIVETCEASCNTETSVIAKLAAAALRRGISHE 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 L V+ G R G+ ++ + + L I ++ AC Sbjct: 121 IILMVEMGDGREGIMPEDLTNAALHVTRTPGVLLKGIGANFAC 163 >gi|153933907|ref|YP_001384263.1| alanine racemase domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935732|ref|YP_001387802.1| alanine racemase domain-containing protein [Clostridium botulinum A str. Hall] gi|152929951|gb|ABS35451.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931646|gb|ABS37145.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A str. Hall] Length = 353 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 10/202 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + ++++D ++ N + + AV K G KIA A+ V Sbjct: 2 SYPKVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q + + I ++S + + SK Sbjct: 59 SRIENLKKL--AHINLPKMLLRLPMISQVEEVVKYADISLVSDIITIRELSKEAIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + N K +L I ++L+C N QL Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYITVKEILNFKNVKLMGIGTNLSCYGGVIPTYKNLSQL 176 Query: 180 ERFRTLISHYKGIEASLASSSG 201 + I + I+ + S Sbjct: 177 VNIKKNIENKFNIKIEVISGGN 198 >gi|27468687|ref|NP_765324.1| hypothetical protein SE1769 [Staphylococcus epidermidis ATCC 12228] gi|57867700|ref|YP_189342.1| hypothetical protein SERP1778 [Staphylococcus epidermidis RP62A] gi|251812100|ref|ZP_04826573.1| amino acid racemase [Staphylococcus epidermidis BCM-HMP0060] gi|282875395|ref|ZP_06284268.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis SK135] gi|293368486|ref|ZP_06615110.1| amino acid racemase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316235|gb|AAO05410.1|AE016750_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57638358|gb|AAW55146.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|251804434|gb|EES57091.1| amino acid racemase [Staphylococcus epidermidis BCM-HMP0060] gi|281296160|gb|EFA88681.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis SK135] gi|291317444|gb|EFE57866.1| amino acid racemase [Staphylococcus epidermidis M23864:W2(grey)] gi|329731271|gb|EGG67641.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis VCU144] gi|329736454|gb|EGG72722.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis VCU028] gi|329737053|gb|EGG73308.1| alanine racemase, N-terminal domain protein [Staphylococcus epidermidis VCU045] Length = 353 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 104/336 (30%), Gaps = 35/336 (10%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++++L+ +K N + +L + V+K A G ++I ++ + G+ F + Sbjct: 1 MANVRVNLSKIKYNAKVLQSLLERRHIHFTPVIKCVA---GDKRIVSSIKSLGITHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 ++ +L+ + + + + + + + + + L + H Sbjct: 58 RLDNIEQLKDLDITFTLL--RPTVEADLEKMISRVEMSIQTELTTIKKLNTLAKSLDIKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + + + QL + + C + + + + + Sbjct: 116 QIMLMVDWKDGREGVLTYDVVRYVQEVLRLSHIQLVGLAFNFMCFKSEAPNEKDVRMINK 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA- 240 F + + + + S + P + T + Sbjct: 176 FIHNVENETHFKFRIISGGNSSMLPQTLYNHLD----KINDLRIGEALLRGIDTTTNHSI 231 Query: 241 -RIILIRKALAGELVSYGGQKKLTRDSLI--AVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + L E++ + + A+ IGY D + G Sbjct: 232 NSLYQNAIVLEAEIIEIKPRLYQKNNQSYLQAIVDIGYLDTF---------------IEG 276 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 K ILG + D M D+ + ++GD Sbjct: 277 IKPLGNDIR--ILGASS-DHLMIDLNNQDHYQIGDK 309 >gi|219820855|gb|ACL37548.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820859|gb|ACL37550.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820861|gb|ACL37551.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820863|gb|ACL37552.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820867|gb|ACL37554.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820869|gb|ACL37555.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820873|gb|ACL37557.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820883|gb|ACL37562.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820885|gb|ACL37563.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820887|gb|ACL37564.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820889|gb|ACL37565.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820891|gb|ACL37566.1| alanine racemase-like protein [Listeria monocytogenes] Length = 153 Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 6/154 (3%) Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 1 DEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATLRIH 57 Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VD+G RLG+ +EA S N QL I +H A AD + QL +F+T Sbjct: 58 LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 117 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPG 216 +++ K + +S+ LL P F R G Sbjct: 118 ILTSLKNRPTYVHTANSAASLLQPQIGFDAIRFG 151 >gi|170761414|ref|YP_001787394.1| alanine racemase domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169408403|gb|ACA56814.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 353 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 69/364 (18%), Positives = 119/364 (32%), Gaps = 48/364 (13%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AV K G KIA A+ V Sbjct: 2 SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEKVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 + +E KL +L Q + + I ++S + + SK + Sbjct: 59 SRIENLKKL--VHINLPKMLLRLPMISQVEEVVKYADISLVSDIITIRELSKETIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + N K +L I ++L+C N QL Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYITVEEILNFKSVKLMGIGTNLSCYGGVIPTYKNLSQL 176 Query: 180 ERFRTLISHYKGIEASLA---SSSGILLGPNYHF----QLTRPGISL---YGGTDKINKS 229 + I + I+ + +S I L + R G S+ G D+ + Sbjct: 177 VNIKKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIEP 236 Query: 230 H--PMQTVVTAEARIILIRKALAGE----LVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 +V + G + A+ AIG D P L Sbjct: 237 LLKDAFKLVVEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPDNL 296 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---FGP 339 +D S +LG + D + DIT+ ++GD I+ FG Sbjct: 297 IPIDDNIS-----------------VLGASS-DHLLLDITNCNKDYKIGDKIEFNVTFGG 338 Query: 340 DIKL 343 + + Sbjct: 339 CLSV 342 >gi|219820871|gb|ACL37556.1| alanine racemase-like protein [Listeria monocytogenes] Length = 153 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 6/154 (3%) Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR Q ++ G ++ + N I S + + ++ Sbjct: 1 DEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLEDLTLEAPLRIH 57 Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VD+G RLG+ ++EA + QL I +H A AD + QL +F+T Sbjct: 58 LKVDSGMGRLGIRTVEEARQIETTIASDNQLQLEGIYTHFATADQLETSYFEQQLAKFQT 117 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPG 216 +++ K + +S+ LL P F R G Sbjct: 118 ILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFG 151 >gi|229489294|ref|ZP_04383158.1| arginase family protein [Rhodococcus erythropolis SK121] gi|229323787|gb|EEN89544.1| arginase family protein [Rhodococcus erythropolis SK121] Length = 597 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 7/204 (3%) Query: 7 LRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DL ++ N + + + A V K G K+A A+ GV + Sbjct: 4 PTITVDLRRIEQNARVLVEASSAHGISVAGVSKST---CGSPKVARAMVRGGVTQIADSR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSHP 123 ++ ++R + ++ + I + S + + + GV H Sbjct: 61 LDNLARIRRDGITVPLMLIRAPSLNEIDDTIRYADISLNSELTTIAALGRAARTRGVVHD 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQLERF 182 L +D G R G+ EALD + +L I ++LAC V N L Sbjct: 121 IVLMIDLGDLREGILPAEALDVVAEILPIEGIRLIGIGANLACVGGIQPTVDNLSNLVYL 180 Query: 183 RTLISHYKGIEASLASSSGILLGP 206 I+ IE + S P Sbjct: 181 ADEITKRFSIELPIVSGGNTFSLP 204 >gi|219820857|gb|ACL37549.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820865|gb|ACL37553.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820875|gb|ACL37558.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820877|gb|ACL37559.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820879|gb|ACL37560.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820881|gb|ACL37561.1| alanine racemase-like protein [Listeria monocytogenes] gi|219820893|gb|ACL37567.1| alanine racemase-like protein [Listeria monocytogenes] Length = 153 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 6/154 (3%) Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + LR Q ++ G ++ + N I S + + ++ + Sbjct: 1 DEALALREAGFQDDFILVLGATRKEDANLAAKNHI---SLTVFREDWLENLTLEATLRIH 57 Query: 126 LQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+VD+G RLG+ +EA S N QL I +H A AD + QL +F+T Sbjct: 58 LKVDSGMGRLGIRTTEEARRIEATSTNDHQLQLEGIYTHFATADQLETSYFEQQLAKFQT 117 Query: 185 LISHYKGIEASLA--SSSGILLGPNYHFQLTRPG 216 +++ K + +S+ LL P F R G Sbjct: 118 ILTSLKKRPTYVHTANSAASLLQPQIGFDAIRFG 151 >gi|168185009|ref|ZP_02619673.1| alanine racemase, N-terminal domain protein [Clostridium botulinum Bf] gi|237795433|ref|YP_002862985.1| alanine racemase, N-terminal domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182671931|gb|EDT83892.1| alanine racemase, N-terminal domain protein [Clostridium botulinum Bf] gi|229263648|gb|ACQ54681.1| alanine racemase, N-terminal domain protein [Clostridium botulinum Ba4 str. 657] Length = 353 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 68/364 (18%), Positives = 117/364 (32%), Gaps = 48/364 (13%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AV K G KIA A+ V Sbjct: 2 SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEEVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q + + I ++S + + SK Sbjct: 59 SRIENLKKL--VHINLPKMLLRLPMISQVEEVVKYADISLVSDIITIRELSKEAIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + + K +L I ++L+C N QL Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYITVKEILDFKSIKLMGIGTNLSCYGGVIPTYENLSQL 176 Query: 180 ERFRTLISHYKGIEASLA---SSSGILLGPNYHF----QLTRPGISL---YGGTDKINKS 229 I + I+ + +S I L + R G S+ G D+ + Sbjct: 177 VNIEKNIENKFNIKIEVISGGNSGSISLFKDNKMPQEINQLRLGASISLGIGLNDEHIEP 236 Query: 230 H--PMQTVVTAEARIILIRKALAGE----LVSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 +V + G + A+ AIG D P L Sbjct: 237 LLKDAFKLVVEIVEVKNKPSVPIGTIGLDAFGNKPFFEDKGIMKRAICAIGRQDISPDNL 296 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI---FGP 339 +D S +LG + D + DIT+ ++GD I+ FG Sbjct: 297 IPIDDNIS-----------------VLGASS-DHLLLDITNCNKDYKIGDKIEFNVTFGG 338 Query: 340 DIKL 343 + + Sbjct: 339 CLSV 342 >gi|332654124|ref|ZP_08419868.1| amino acid racemase [Ruminococcaceae bacterium D16] gi|332517210|gb|EGJ46815.1| amino acid racemase [Ruminococcaceae bacterium D16] Length = 364 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 6/144 (4%) Query: 3 SNEFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 S ++ ++IDL LK N ++ + + + VVK A GV Sbjct: 5 SYQYPHVEIDLGKLKENLAALQERCQASSIEISGVVKGF---HALPAAAKVYEEVGVSSI 61 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 + +++ L+ + + ++ P + + + + I + S L + G Sbjct: 62 ASSRMDQLRGLKEAGIRTPLMLIRIPMPSEVEDVVTWSDISLNSERSVLRLLDEAARNQG 121 Query: 120 VSHPYALQVDTGFNRLGLSLQEAL 143 +H L VD G R G + L Sbjct: 122 KTHKVILMVDLGDLREGFWDWDEL 145 >gi|226949300|ref|YP_002804391.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A2 str. Kyoto] gi|226842782|gb|ACO85448.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A2 str. Kyoto] Length = 353 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 10/202 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AV K G KIA A+ V Sbjct: 2 SYPRVEVDTKKIRYNTKILVEECKKRGIKVVAVTKTF---CGNPKIAKAIAEEEVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q + + I ++S + + SK Sbjct: 59 SRIENLKKL--VHINLPKMLLRLPMVSQVEEVVKYADISLVSDIITIRELSKEAIKQNKI 116 Query: 122 HPYALQVDTGFNRLGLSLQEALDF-THNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G+ +E + + K +L I ++L+C N QL Sbjct: 117 HSIILMIDLGDLREGIFNEEEIYITVKEILDFKSIKLMGIGTNLSCYGGVIPTYENLSQL 176 Query: 180 ERFRTLISHYKGIEASLASSSG 201 I + I+ + S Sbjct: 177 VNIEKNIENKFNIKIEVISGGN 198 >gi|314935883|ref|ZP_07843235.1| putative amino acid racemase [Staphylococcus hominis subsp. hominis C80] gi|313656448|gb|EFS20188.1| putative amino acid racemase [Staphylococcus hominis subsp. hominis C80] Length = 353 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 115/333 (34%), Gaps = 32/333 (9%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 R+ I+L+ ++ N H + L S N V+K A G E I L G F + Sbjct: 1 MSRIVINLSKIEYNGHVLKMLFDSKNIAIIPVIKSIA---GDEHIIKRLMKVGFNYFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E + +T + +L Q + + + + + + + + + + + + Sbjct: 58 RLENIPQ--QFTKDCQFLLLRSPLKRQYEDLIKESYVSIQTEMVTIRQLNHIATEMSNQH 115 Query: 124 YAL-QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV-QLER 181 + VD R G+ +++ + +L + + C + +N + ++ + Sbjct: 116 QVILMVDWKDQREGVLPYHIVEYINEIKRMNNIKLLGLAFNFMCFKSKAPTLNDIDEINQ 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNY-HFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 F + + G+ + S + P + L G T Sbjct: 176 FVHHVQYETGVSFEVISGGNSSMLPLLKQYDLGCINELRIGETLFRGVDTTTNE---NIP 232 Query: 241 RIILIRKALAGELVSYGGQK-KLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 + L E++ + K L A+ +GY D +V K Sbjct: 233 ELFQNAILLEAEIIEIKPRYTKTKESYLQAIVDVGYID---------------TVIEKIK 277 Query: 300 GFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332 + + I+G + D M D+ + ++ +VGD Sbjct: 278 PL--NHRIEIMGASS-DHLMIDLKEEINYKVGD 307 >gi|187779380|ref|ZP_02995853.1| hypothetical protein CLOSPO_02976 [Clostridium sporogenes ATCC 15579] gi|187773005|gb|EDU36807.1| hypothetical protein CLOSPO_02976 [Clostridium sporogenes ATCC 15579] Length = 353 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 10/202 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + R+++D ++ N + + AV K G KIA + V Sbjct: 2 SYPRVEVDTKKIRYNTKVLVEECKKRGIKVTAVTKTF---CGNPKIAKVIAEEKVDILAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E KL +L Q K + I ++S + + SK Sbjct: 59 SRIENLKKL--THINLPKMLLRLPMISQVKEVIKYADISLVSDIITIRELSKEAIEQNKI 116 Query: 122 HPYALQVDTGFNRLG-LSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV-NSVQL 179 H L +D G R G + +E N K +L I ++L+C N QL Sbjct: 117 HNIILMIDLGDLREGIFNEEEIYTTVEEILNLKGIKLMGIGTNLSCYGGVIPTYENLSQL 176 Query: 180 ERFRTLISHYKGIEASLASSSG 201 + I I+ + S Sbjct: 177 VNIKKNIESKFNIKIEVISGGN 198 >gi|163736631|ref|ZP_02144050.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis BS107] gi|161390501|gb|EDQ14851.1| hypothetical amino acid racemase [Phaeobacter gallaeciensis BS107] Length = 373 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 6/163 (3%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 R+KIDL +++N + V K G +A A+ + G Sbjct: 4 PRIKIDLHKIRDNTRCLVERLKPLGITVTGVTKGVC-GH--PGVARAMLDGGAIGLADAR 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHP 123 + ++R I ++ Q I +T + + + G+SH Sbjct: 61 LANVRRMRKAGLTCPILMIRTPMLSQAGQIVETCEASCNTETSVIAKLAAAALRRGISHE 120 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 L V+ G R G+ ++ + + L I ++ C Sbjct: 121 IILMVEMGDGREGIMPEDLTNAALHVTRTPGVLLKGIGANFGC 163 >gi|312880008|ref|ZP_07739808.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260] gi|310783299|gb|EFQ23697.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260] Length = 354 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 56/363 (15%), Positives = 108/363 (29%), Gaps = 30/363 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGL-GCEKIAPALYNAGVQDFFV 62 L + + +N + G V K GL G ++ G Sbjct: 3 LPELMVHGDRILHNVREVVRRCGAAGVDLWGVTK----GLCGNPQVGRLFLEGGCTALAD 58 Query: 63 TSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 + V LR +A + + E+++ + V S G + Sbjct: 59 SRVRNLRGLREAGIRAPLYLIRIPMEQELEELVEVADGALVSMGETLEALEELCRSRGRT 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLE 180 + VD G R G+ +E + + + ++L C ++ N +L Sbjct: 119 FRAVVMVDVGDLREGVLPEELESLGRRCAALRHVVVEGLGTNLGCFGGILATPENLTELL 178 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 + G+EA L S L L G G + ++ ++ Sbjct: 179 QGAERFREASGLEAPLVSGGATLSLK-----LLEEGTLPRGIN---HLRVGEALLLGTDS 230 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLI---AVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + L E + Q R + P + + Sbjct: 231 TGMRTIPYLNQETMEIRAQVVELRRKPSVPRGTVGVDAFGAVPSFEDRGNRRRAILALGK 290 Query: 298 GKGFIKGYM-----VPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGT 352 ++G V ILG + D + D+ + ++++GD + F P+ +A A T Sbjct: 291 QDVRLEGLTPLESGVEILGGSS-DHLVCDVEEVPALQLGD-VLSFRPNYGA-MLAAA--T 345 Query: 353 TNY 355 + Y Sbjct: 346 SPY 348 >gi|239929460|ref|ZP_04686413.1| alanine racemase [Streptomyces ghanaensis ATCC 14672] Length = 37 Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 340 DIKLDDVALASGTTNYDLLVRIGTRYAKF 368 + +D A A+GT Y+++ RIG R + Sbjct: 3 EPTAEDWAQAAGTIAYEIVTRIGGRVPRV 31 >gi|19703887|ref|NP_603449.1| Serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714049|gb|AAL94748.1| Serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 369 Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 53/364 (14%), Positives = 95/364 (26%), Gaps = 60/364 (16%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M E + +++ ALKNN L ++K +I G Sbjct: 1 MKKKELKTPTILLNIEALKNNIKKYQKLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111 +++E + ++ K I + +I + S + Sbjct: 57 ATGVLCGTLDEVEACCQIGIKKIMYAYPVASEENIKRIIEISKKTEFIIRLDSLEAAIKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHL 164 + V Y + VD+G +R G +E + + S Sbjct: 117 NKMAETENVIINYNIIVDSGLHRFGVSLKNLLTFAEELKKLKYLKLKGISSHPGHVYSST 176 Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLY 220 AD +N + R I +G +S L PG ++ Sbjct: 177 CEADIQQYVLNECETLRKAKEILEKEGYYLEYITSGSTPTFEEAVKDLNINVYHPGNYVF 236 Query: 221 GGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD- 277 + INK+ +T II + G Sbjct: 237 LDSIQLSINKAKIKDCALTVLTTIISH---------PSENLFICDAGAKCLGLDQGAHGN 287 Query: 278 ----GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 GY + + S GK I+G ++++GD Sbjct: 288 NSIVGYGTVIDHPEVIVSSLSEEVGKLKIEGQT--------------------NLKIGDK 327 Query: 334 IQIF 337 I+I Sbjct: 328 IEII 331 >gi|283770470|ref|ZP_06343362.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus H19] gi|283460617|gb|EFC07707.1| alanine racemase 2 [Staphylococcus aureus subsp. aureus H19] Length = 219 Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 80/204 (39%), Gaps = 25/204 (12%) Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS----HYKGIEASLASSSGILLGPN 207 +S + +H AD+ +V+ ++ ++ + A +S Sbjct: 1 MTKMIISGLWTHFGYADEFDVSDYNVERLQWMEIVEALLSEGYQFDLIHAQNSASFYREG 60 Query: 208 ----YHFQLTRPGISLYGGTDKINKS-HPMQTVVTAEARIILIRKALAGELVSYGGQKKL 262 H R GI+LYG + + H + +T +A +I +R+ G+ Y ++ Sbjct: 61 QILLPHHTHARVGIALYGSRPYSSLNQHDIVQSLTVKAHVIQVREVQVGDYCGYSFAFEV 120 Query: 263 TRDS-LIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFD 321 T+++ +AV IGY DG T + I G PI + M + Sbjct: 121 TKNNTKLAVVDIGYGDGILRT------------RAKHEALINGKRYPIR-ALMMSHMFVE 167 Query: 322 ITDSLSIEVGDYIQIFGPDIKLDD 345 + ++ + D + ++ DI++D+ Sbjct: 168 VDGNVHAQ--DEVILYNNDIRIDE 189 >gi|302390371|ref|YP_003826192.1| alanine racemase domain protein [Thermosediminibacter oceani DSM 16646] gi|302200999|gb|ADL08569.1| alanine racemase domain protein [Thermosediminibacter oceani DSM 16646] Length = 372 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 11/149 (7%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL L+ N + R +VK +IA AG + F V ++ E Sbjct: 13 VDLDVLEQNIKETADIVKTYGKRLWPMVKT----HKSTEIAAMQKAAGAEGFLVGTLLEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +L + K + ++ + S L GV Sbjct: 69 ERLVEKGFNDIMLAYPVAGRQNLKRVIRLAQKARIILSIDCVEVAREINSALEENGVELE 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNK 152 Y + +D+G R G+ ++A Sbjct: 129 YLIIIDSGLRRFGVLPEDAAGLARELAAL 157 >gi|255654463|ref|ZP_05399872.1| putative amino acid racemase [Clostridium difficile QCD-23m63] gi|296449186|ref|ZP_06890973.1| amino acid racemase [Clostridium difficile NAP08] gi|296880837|ref|ZP_06904785.1| amino acid racemase [Clostridium difficile NAP07] gi|296262005|gb|EFH08813.1| amino acid racemase [Clostridium difficile NAP08] gi|296428124|gb|EFH14023.1| amino acid racemase [Clostridium difficile NAP07] Length = 354 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 41/347 (11%), Positives = 103/347 (29%), Gaps = 30/347 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62 + RL+ID+ LK+N ++ + N + + V K +++ A+ + G+ Sbjct: 2 YPRLEIDIEKLKHNAKLISQMCHERNIKISFVTKSFC----AQKEVVKAICSEGIDHIAD 57 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 + ++ L+ ++ + + + + I S + + ++ S + Sbjct: 58 SRIQNLKNLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115 Query: 122 HPYALQVDTGFNRLGLSLQEALDF--------THNSFNKKLGQLSLIISHLACADDPSSH 173 H L D G R G +E + + L+ + + ++ Sbjct: 116 HKIVLMFDLGDLREGYFYEEDFFYNVREIIKLKNIKIIGIATNLTCYGAIIPSRENIGRL 175 Query: 174 VNSVQLE--RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 + Q +F + G +S P L L G ++ Sbjct: 176 ASIAQKMEGKFGINLEIVSGGNSSSIHLMTNDNMPEGITNLRIGESILLGRETAYGENIN 235 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + ++ + R+ + + D Sbjct: 236 GTYQDAFKLICQVVECKEKPSVPIGEIGFDAFRNKPVYEDKGILKRAII-AIGKQDINID 294 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITD-SLSIEVGDYIQIF 337 + + ILG + D + D+++ ++GD ++ Sbjct: 295 SLIPIDTDI-------KILGASS-DHMILDVSNTKYDYKLGDSVEFL 333 >gi|256026803|ref|ZP_05440637.1| Serine racemase [Fusobacterium sp. D11] gi|289764799|ref|ZP_06524177.1| serine racemase [Fusobacterium sp. D11] gi|289716354|gb|EFD80366.1| serine racemase [Fusobacterium sp. D11] Length = 369 Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 48/364 (13%), Positives = 98/364 (26%), Gaps = 60/364 (16%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + + +++ ALKNN L ++K +I G Sbjct: 1 MQKKDLKTPTILLNIEALKNNIKKYQNLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111 +++E + ++ K I + +I + S + Sbjct: 57 ATGVLCGTLDEAEACCQKGVKKIMYAYPVASEENIKRIIEMSKKTEFIIRLDSLEAAIKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHL 164 + + Y + VD+G +R G +E + + S Sbjct: 117 NKIAETENIIINYTIIVDSGLHRFGVSLKNLLTFAEELKKLKYLKLRGISSHPGHVYSST 176 Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLY 220 AD ++ + R + +G +S + + + PG ++ Sbjct: 177 CEADIHQYVLDECETLRKAKELLEKEGYYLKYITSGSTPTFEEAVKDSNINVYHPGNYVF 236 Query: 221 GGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD- 277 + INK+ +T A II + G Sbjct: 237 LDSIQLSINKAKIKDCALTVLATIISH---------PSENLFICDAGAKCLGLDQGVHGN 287 Query: 278 ----GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 GY ++ + GK I+G ++++GD Sbjct: 288 SSIIGYGTVINHPEIIVFSLSEEVGKLKIEGQT--------------------NLKIGDK 327 Query: 334 IQIF 337 I+I Sbjct: 328 IEII 331 >gi|237739119|ref|ZP_04569600.1| serine racemase [Fusobacterium sp. 2_1_31] gi|229423719|gb|EEO38766.1| serine racemase [Fusobacterium sp. 2_1_31] Length = 369 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 51/359 (14%), Positives = 96/359 (26%), Gaps = 50/359 (13%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M E + +++ ALKNN + L ++K +I G Sbjct: 1 MKKKELKTPTILLNIEALKNNIKNYQKLCTEYKKELWPMIKT----HKSMEIVGMQIKEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111 +++E Q ++ K I + +I + S + Sbjct: 57 ATGVLCGTLDEAEACCEKGIQKIMYAYPVASEENIKRIIEITKKTDFIIRLDSLEAAIKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHL 164 + V Y + VD+G +R G +E + + S Sbjct: 117 NKIAEAENVIISYTIIVDSGLHRFGLSLKNLLTFAEELKKLKNLKLRGISSHPGHVYSST 176 Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLY 220 AD ++ + + I +G +S L PG ++ Sbjct: 177 CEADIHKYVLDECETLKEAKEILEKEGYYLEYITSGSTPTFTEAVKDLNINVYHPGNYVF 236 Query: 221 GGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 + INK+ +T A II + G Sbjct: 237 LDSIQLSINKAKVKDCALTVLATIISH---------PSENLFICDAGAKCLGLDQGAH-- 285 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 +V + + + +GK + S++VGD I+I Sbjct: 286 -----GNSSIIGYGTVIDHPEVIV-SSLSEEVGK-------LKVEGETSLKVGDKIEII 331 >gi|237741584|ref|ZP_04572065.1| serine racemase [Fusobacterium sp. 4_1_13] gi|229429232|gb|EEO39444.1| serine racemase [Fusobacterium sp. 4_1_13] Length = 369 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 54/364 (14%), Positives = 104/364 (28%), Gaps = 60/364 (16%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + + +++ ALKNN L ++K +I G Sbjct: 1 MQKKDLKTPTILLNIEALKNNIKKYQNLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111 +++E + ++ I + +I + S + Sbjct: 57 ATGVLCGTLDEAEACCQKGVKKIMYAYPVASEENINRIIEMSKKTEFIIRLDSLEAAIKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 + + Y + VD+G +R G+SL+ L F K +L I SH + Sbjct: 117 NKIAETENIIINYTIIVDSGLHRFGVSLKNLLAFAEKLKKLKYLKLRGISSHPGHVYSST 176 Query: 172 SHVNSVQ--------LERFRTLISHYKGIEASLASSSGILLG---PNYHFQLTRPGISLY 220 + Q L + + L+ + S S + + + PG ++ Sbjct: 177 CEADIHQYVLDECETLRKAKELLEKEGYYLKYITSGSTPTFEEAVKDSNINVYHPGNYVF 236 Query: 221 GGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD- 277 + INK+ +T A II + G Sbjct: 237 LDSIQLSINKAKIKDCALTVLATIISH---------PSENLFICDAGAKCLGLDQGAHGN 287 Query: 278 ----GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 GY ++ + GK I+G ++++GD Sbjct: 288 SSIIGYGTVINHPEIIVFSLSEEVGKLKIEGQT--------------------NLKIGDK 327 Query: 334 IQIF 337 I+I Sbjct: 328 IEII 331 >gi|84386391|ref|ZP_00989419.1| Predicted amino acid racemase [Vibrio splendidus 12B01] gi|84378815|gb|EAP95670.1| Predicted amino acid racemase [Vibrio splendidus 12B01] Length = 378 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 6/165 (3%) Query: 5 EFLRLKIDLTALKNNWHS-MNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL ID + +N ++ LS N V K LG IA L +AG Sbjct: 2 NYPRLDIDCGKVHHNAQFLISQLSLKNISVTPVTKAF---LGHPIIAQVLIDAGATMLAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVS 121 + +E K+ ++ Q + + + + S V + S Sbjct: 59 SRIENLQKMTESGIAIPKMLIRTPMLSQVASVIKYSDMSLNSEVEVIQRLSHAAEQQNCC 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 H + V+ G R G+ +DF + + I ++LAC Sbjct: 119 HGIIIMVELGDLREGVMPNRVIDFIREIISLPNITIKGIGTNLAC 163 >gi|119718891|ref|YP_925856.1| alanine racemase domain-containing protein [Nocardioides sp. JS614] gi|119539552|gb|ABL84169.1| alanine racemase domain protein [Nocardioides sp. JS614] Length = 351 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/367 (14%), Positives = 105/367 (28%), Gaps = 56/367 (15%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L L +D + + ++ + V K N YG ++A GV V + + Sbjct: 3 LTLSVDGERWRAHLRTVADATPG--LVPVAKGNGYGFTLGRLARKAQWLGVDVLAVGTYD 60 Query: 67 E--GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 E V R + P E + + +V + L++ Sbjct: 61 ELPEVASRYAGDLLVLTPWRPFGPAVELDAALAARV--VHTVSRPGDLGDLLARQPDARV 118 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 L+ T R G++ +E + ++ + HL A +H++ VQ Sbjct: 119 VLERATSMLRHGMTARELWSTPRILADHPKARVRGVALHLPLA--HGAHLSEVQR----- 171 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP--MQTVVTAEARI 242 L++ E L + L + R + ++ + + A + Sbjct: 172 LMNDVVATELPLDTVWVSHLSAD-DLAALRASYPDFTFRPRVGTDLWLGDRGALRVTATV 230 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----------------------- 279 + + G+ Y + + I V + G A G Sbjct: 231 LDVHPVERGDAFGYRHR-TAPKAGHILVVSGGTAHGIGLEAPTGDAGLRARAATLARGGL 289 Query: 280 --------PLTLSGLDSEHSPSVFLGGKGFI--KGYMVPILGKITMDMTMFDITDSLSIE 329 P ++ G + + G VP +G D D+ + Sbjct: 290 DAAGFVRSPFSIDGKLRLFAEPPHMQASMLFLPHGARVPSVG----DQ--VDVRVRYTAT 343 Query: 330 VGDYIQI 336 D + + Sbjct: 344 AFDRVVV 350 >gi|149923112|ref|ZP_01911527.1| amino acid aldolase or racemase-like protein [Plesiocystis pacifica SIR-1] gi|149816020|gb|EDM75534.1| amino acid aldolase or racemase-like protein [Plesiocystis pacifica SIR-1] Length = 408 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 34/258 (13%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA---------AVVKDNAYGLGCEKIAPALYNAGVQD 59 L IDL A+++N +M +G+ + AVV AL AG++ Sbjct: 33 LVIDLDAVEHNIAAMVQRAGSPQRWRPHLKTTKQAVV------------ISALIRAGLRH 80 Query: 60 FFVTSVEE-GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V +++E + LR + + +P Q + Q+ + + Sbjct: 81 LKVATLDELELVLRTGAAEDVALDVLVAYPLQRAACRGALALAARWPEAQIHVLADSPAH 140 Query: 119 GVSHPYA---------LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169 + L VD G R G + L L H Sbjct: 141 LEALAAWSGSDPLSVLLDVDLGMGRTGSAPDRWRALEATPEGLSLAGLHGYDGHHRWTHR 200 Query: 170 PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 ++H QL + + LL H + + + Sbjct: 201 EAAHAGYGQLCALAQAFLERPALRI---QGAFELLTSGTHSYAHALAYPGFAESKEAPSP 257 Query: 230 HPMQTVVTAEARIILIRK 247 +P V+ + R+ Sbjct: 258 NPWLHRVSPGTIVFNDRR 275 >gi|157363014|ref|YP_001469781.1| ornithine decarboxylase [Thermotoga lettingae TMO] gi|157313618|gb|ABV32717.1| Ornithine decarboxylase [Thermotoga lettingae TMO] Length = 376 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL ++ N+ + A + + +K N+ +I L + G +F V S+ E Sbjct: 19 LIIDLDIIEENYRKLAAAIPDCKIFYAIKANS--H--PRILERLRDLG-SNFDVASIGEI 73 Query: 69 VKLRLYTPQARIFVL 83 KL A + Sbjct: 74 KKLMNLGVTADRMIF 88 >gi|257453160|ref|ZP_05618459.1| Serine racemase [Fusobacterium sp. 3_1_5R] gi|317059695|ref|ZP_07924180.1| serine racemase [Fusobacterium sp. 3_1_5R] gi|313685371|gb|EFS22206.1| serine racemase [Fusobacterium sp. 3_1_5R] Length = 369 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 51/349 (14%), Positives = 98/349 (28%), Gaps = 30/349 (8%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + + +++ LK+N H L ++K + I G Sbjct: 1 MRKEDLKTPTILLNIGVLKDNIHRYQKLCNQYGKELWPMIKT----HKSKGILEIQIEEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTF 111 ++EE + + ++ + + + +I + + Sbjct: 57 ASGALCGTLEEAEMCQKMGVKKIMYAYPVSTKENIQRVIELASKSYFIIRLDNEEGAKKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 + V Y + VD+G +R G+S+ L F + + I + P Sbjct: 117 NEMAIKEDVIINYTIIVDSGLHRFGVSVDNILGFAEKLKQFQNLKFVGI------SSHPG 170 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGP-NYHFQLTRPGISLYGGTDKINKSH 230 +S + + S Y + P +IN H Sbjct: 171 HVYSSTCSKDIEKYVEDECDTLHKAKSILEEAGYSIKYVTTGSTPTFDEAVKHPEINVYH 230 Query: 231 PMQTVV--TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDS 288 P V + + I +K V D I A G G +S Sbjct: 231 PGNYVFLDSIQLSIGKAKKENCALTVYSSIISHPQEDLFICDAGAK-CLGLDQGAHGNNS 289 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 + + + +GKI +T ++VGD I+I Sbjct: 290 IIGYGTIIDHPELVIVSLSEEVGKI-------KVTGQTDLKVGDKIEII 331 >gi|289522792|ref|ZP_06439646.1| amidohydrolase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504628|gb|EFD25792.1| amidohydrolase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 86 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 315 MDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASG 351 MD M DITD + ++GD + G I +++AL Sbjct: 1 MDQFMIDITDINNPKIGDEVVFLGRQGKELIAAEEIALLLN 41 >gi|305666203|ref|YP_003862490.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Maribacter sp. HTCC2170] gi|88708194|gb|EAR00431.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Maribacter sp. HTCC2170] Length = 370 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 23/156 (14%) Query: 1 MHSNEFLRLK-----------IDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKI 48 M + ++ RLK + ++ N M ++G +K +I Sbjct: 1 MQTMDWYRLKDTAEVISPSLMVYPDRIEKNIQLMVKMAGGTEFLRPHIKT----HKMAEI 56 Query: 49 APALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG-------IHPGQEKIIFDTNLIP 101 G++ F ++ E L + + + +K Sbjct: 57 VNMQMQHGIRKFKCATIAEAELLAQCGAEDILLAMQPVGANMTRYFELMDKYSSSDFSTL 116 Query: 102 VISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGL 137 V + F G+ L ++ G +R G+ Sbjct: 117 VDNQKTANEFIEHSKKRGMKTSLWLDINNGMDRTGI 152 >gi|332978060|gb|EGK14798.1| hypothetical protein HMPREF9374_0084 [Desmospora sp. 8437] Length = 391 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 91/275 (33%), Gaps = 15/275 (5%) Query: 16 LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75 ++ M L V+K N YG G E +A A +G ++ V +VEE +L Sbjct: 13 FRH-MEHMEELYPGC--VPVIKGNGYGFGNEVLADAARKSGKREIAVGTVEEARQLEATH 69 Query: 76 PQARIFVLYGIHPG--QEKIIFDTNLIPVISSVPQLTFYSKL--------MSCGVSHPYA 125 ++ VL + + ++ + Q + M Sbjct: 70 RFDQMIVLTPVMSELMEADLVSERVYTVGSRDHLQFLVTAVDGLLSRGTGMEEPFRLKLL 129 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 L+ + R G SL++A + ++ + I L+ + + + Sbjct: 130 LKCQSPMKRYGFSLEDAGLLPEWIQRAETDRVKIEIKGLSIHFPKERTTSQAKEKCIGDW 189 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLT-RPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + K + L + QLT + + + ++ V ++ ++ Sbjct: 190 LETMKRVGLPSGRMYVSHLSSEQYHQLTEKWPEVRFAMRLGTDLWLADKSFVETKSTVLD 249 Query: 245 IRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 ++ GE Y ++ R+ + A G A+G Sbjct: 250 VQPIRRGERFGYKQ-QRACRNGHLVFLAGGTANGV 283 >gi|325526094|gb|EGD03755.1| alanine racemase [Burkholderia sp. TJI49] Length = 133 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +++G NRLG + + ++ H A ADD QL+ F + Sbjct: 4 MNSGMNRLGYRPDAFRAAWERAASAPSIGRITLMMHFANADDGE---VDWQLDTFDAATA 60 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH----PMQTVVTAEARII 243 G E S+++S+ +L P H RPG LYG + H P+ +T ++II Sbjct: 61 GIPG-ERSVSNSAAVLWHPRAHRDWVRPGTILYGASPTGAARHIADTPLMPAMTLTSKII 119 Query: 244 LIRKALAGELVSYG 257 ++ E V YG Sbjct: 120 GVQTLAPEETVGYG 133 >gi|145485664|ref|XP_001428840.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395928|emb|CAK61442.1| unnamed protein product [Paramecium tetraurelia] Length = 138 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L++D +N + +G+ + AV+K +AYG G E + + V+ Sbjct: 13 LEMDSEVYIHNIKELRVSTGDKVKICAVMKADAYGHGIEVMMDTFVKSIVEYI 65 >gi|154248961|ref|YP_001409786.1| alanine racemase domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154152897|gb|ABS60129.1| alanine racemase domain protein [Fervidobacterium nodosum Rt17-B1] Length = 358 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 12/153 (7%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 F R+ I++ ++ N + + S + V K N +IA + GV Sbjct: 5 FPRVVINIDSIAYNTQKIAEICHSNDIELVGVTKLALAN------PEIARVMRKNGVDKL 58 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS-VPQLTFYSKLMSCG 119 + ++ +KL +L + + ++S + Sbjct: 59 GDSRLKNIIKLYENNVPGPYQLLRIPMISELPLAVKYADEILVSMPETAYEIDKIVGELQ 118 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 + +D G R G+ + A+ + + Sbjct: 119 KNVQIIYMIDVGDLREGVWYEHAISEIYEVSKQ 151 >gi|239617968|ref|YP_002941290.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506799|gb|ACR80286.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1] Length = 355 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 6/161 (3%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++I +K N + L V K G EKIA A+ AGV+ + +E Sbjct: 4 VEIYPNRVKMNTSYLRNLCAGYGVEVVGVTKVT---CGDEKIASAIVEAGVKTIGESRIE 60 Query: 67 EGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +++R A +L + D + +IS + L + + + H Sbjct: 61 NIIRIRNSGMDNANFMLLRPPQRSRVSAALDVADVFLISDLDMLGCFMEAPNLRKYHRMI 120 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 +DTG R G+ +EA+ + L+ I ++L C Sbjct: 121 YMIDTGDLREGVWYKEAIPELEEAVKIAGRYLAGIGTNLGC 161 >gi|134097855|ref|YP_001103516.1| Orn/DAP/Arg decarboxylase 2 [Saccharopolyspora erythraea NRRL 2338] gi|291005509|ref|ZP_06563482.1| Orn/DAP/Arg decarboxylase 2 [Saccharopolyspora erythraea NRRL 2338] gi|133910478|emb|CAM00591.1| Orn/DAP/Arg decarboxylase 2 [Saccharopolyspora erythraea NRRL 2338] Length = 402 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL A++ N+ ++ + +AR VK N ++ L G F V S E Sbjct: 40 LVVDLAAVRRNYQALRSALPDARICYAVKANP----APEVVATLAALG-SSFDVASPGE 93 >gi|138895645|ref|YP_001126098.1| hypothetical protein GTNG_2001 [Geobacillus thermodenitrificans NG80-2] gi|196249582|ref|ZP_03148279.1| alanine racemase domain protein [Geobacillus sp. G11MC16] gi|134267158|gb|ABO67353.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210876|gb|EDY05638.1| alanine racemase domain protein [Geobacillus sp. G11MC16] Length = 370 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 26/342 (7%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSG-NARTAAVVK---DNAYGLGCEKIAPALYNAGVQD 59 + + R+ D L +N +NA+ + V K N +I +LY G + Sbjct: 2 DRYPRVTWDEKKLIHNARVLNAICKHHVEWIPVTKSVGAN------IEIVDSLYKQGYRK 55 Query: 60 FFVTSVEEGVKLRLY--TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 F + ++ ++ Y + + + GIH ++ I + + V + +S Sbjct: 56 FADSRLQNLKAIKEYDSSINTCLLRIPGIHEIKDVITWADCSLVSEYKVIEALNQE-ALS 114 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS- 176 G H L ++ G R G+ +E +D + I ++L C + Sbjct: 115 QGKIHHIILMIELGDLREGIMPEELMDIGKHILKFPAIHWLGIGTNLTCFGGVLPTSDKL 174 Query: 177 VQLERFRTLISHYKGIEASLASSS-----GILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 QL + + + G S+ S +L+ ++ + + Sbjct: 175 AQLVQLKESVEKKLGYHLSVISGGNSSSLHLLMSGEMPREINHLRLGESLFFGRETAFSK 234 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + + ++ + SY + + G E Sbjct: 235 QIPGMHHDIFLLEAEVIEIKDKPSYPQGIIVK--NAFGETPHFTDKGIRRRAILALGEQD 292 Query: 292 PSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGD 332 + G I+G + D + D+T+ I+VG Sbjct: 293 VPLSELTPVK-NGI--EIIGGSS-DHAILDVTEHHDQIQVGS 330 >gi|150390137|ref|YP_001320186.1| alanine racemase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949999|gb|ABR48527.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF] Length = 364 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 9/150 (6%) Query: 1 MHSNEF-LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGV 57 M S++ ++ IDL L++N M A V K G +IA A+ + G+ Sbjct: 1 MESDKMNPKVTIDLAKLRHNARVMTEKCNEYGIAIAGVTKVFG---GRPEIAQAMIDGGI 57 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 Q + VE K++ +L + + I + S V + S+ Sbjct: 58 QYLADSRVENLKKMKDL--SLPKILLRLPMISRVDDVVKYCDISLNSEVETIIALSQAAE 115 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 +H L VD G R G+ +AL Sbjct: 116 KQHKTHKIILMVDLGDLREGIFDSQALKLA 145 >gi|311743393|ref|ZP_07717200.1| amino acid racemase [Aeromicrobium marinum DSM 15272] gi|311313461|gb|EFQ83371.1| amino acid racemase [Aeromicrobium marinum DSM 15272] Length = 360 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 119/368 (32%), Gaps = 28/368 (7%) Query: 7 LRLKIDLTALKNNWHSMN-ALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL+IDL +++N ++ L+ V K G + A+ G + + Sbjct: 5 PRLEIDLDDVEHNTRALVGRLAPRGISVQGVTKAV---CGNPSVGAAMMRGGARGLADSR 61 Query: 65 VEEGVKLRLYTPQARI-FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 +E LR P+A V + ++++ + V + H Sbjct: 62 IENLAVLRRGDPRAPRTLVRSPMLSQVDRVVVEAGTSLNTEPVVLAALSASAAGHRDRHA 121 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD---PSSHVNSVQLE 180 L V+ G R G+++ + +D + L + ++LAC ++ + Sbjct: 122 VVLMVELGDLREGVAVGDVVDLARHVGALGGLALVGLGTNLACQSGVVPDQRSMDELSGL 181 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 S + +S L + R G + + + + Sbjct: 182 VDAVERSSSLVLPVVSGGNSANLGWAMTTRSVGRINQLRLGESILLGTDPLRRASIPG-- 239 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 + L L GE++ K A +A + + + Sbjct: 240 -LRLDACVLVGEVIEVK-TKPARAWGATAQSAFERRPRRRGRGTVRQALVAVGRQDTDP- 296 Query: 301 FIKGYMVP----ILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYD 356 G VP ILG ++ D + D+ D + VGD ++ FG D L + T+ Y Sbjct: 297 --DGLTVPDGMTILG-MSSDHLVLDVGDHATA-VGDELR-FGVDYSAL---LRASTSPY- 347 Query: 357 LLVRIGTR 364 + + R Sbjct: 348 -VTTVEHR 354 >gi|326329098|ref|ZP_08195427.1| putative alanine racemase [Nocardioidaceae bacterium Broad-1] gi|325953180|gb|EGD45191.1| putative alanine racemase [Nocardioidaceae bacterium Broad-1] Length = 350 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 25/281 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAP-----ALYNAGVQDF 60 L+L +D + + + + V K N YGL K+A GV Sbjct: 2 PLKLTVDADRWRKHVQTFAEATPG--LVPVAKGNGYGLTLRKLAHQTEWLTSLGTGVDTL 59 Query: 61 FVTSVEEGVKL--RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 V + E ++ R + P I D +I ++ + L+ Sbjct: 60 AVGTYNEVWEVATRFSGSIYVLTPWRPYSPEINPEIAD----RIIHTISRPEDLPLLLER 115 Query: 119 GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 + L++ T R G++ + + + + L D S Q Sbjct: 116 QPNARVILELVTSMRRHGMTPSDLWPTASIAREHARFEGVTMHFGL---DGGSLAEVRAQ 172 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 ++ + + A+ L G ++ + + Sbjct: 173 MDAVVGAEAKTVWVSHLSANELAQLR--------ASYGDIIFRPRVGTALWLGDRGALHV 224 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 A + + G Y G+ R + VA+ G A G Sbjct: 225 TATVEDVHPLERGYSYGYRGR-TAMRAGHLVVASGGTAHGI 264 >gi|170758708|ref|YP_001787366.1| alanine racemase domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169405697|gb|ACA54108.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 355 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 108/341 (31%), Gaps = 19/341 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIRQLIDLCNMKEIKPVIVTKSFC----AEKLVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ + +L + + + + + + S + + SK Sbjct: 60 DARMKNLMKIQDL--KCEKLLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQTVVT 237 + I I+ S+ S G++ G + + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSSLHIIVNDSMPKGVNQLRIGEAAILGRETAYGQKLN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 L GE++ + + ++ A + + Sbjct: 238 NFYE---DSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIK 294 Query: 298 GKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 295 LDGLIPKDNEIEILGASS-DHLLLDLTKCENQYKIGDTVEF 334 >gi|311742136|ref|ZP_07715946.1| alanine racemase domain protein [Aeromicrobium marinum DSM 15272] gi|311314629|gb|EFQ84536.1| alanine racemase domain protein [Aeromicrobium marinum DSM 15272] Length = 342 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 104/351 (29%), Gaps = 55/351 (15%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE- 67 L +D +++ ++ + VVK N YG G +++A G V + E Sbjct: 5 LHVDTVRWRSHLTTLAEATAG--LVPVVKGNGYGFGRDRLAAEASAFGADTIAVGTYAEV 62 Query: 68 --GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 ++ + VL P ++ D ++ + V + + V Sbjct: 63 PGALE----AFDGDVMVLTPWRPFTTDVVLDPRVVHTVGRVADVAALADHPGTRV----V 114 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI----ISHLACADDPSSHVNSVQLER 181 ++ +T +R G E + ++ ++ HL AD ++ +++ +LE Sbjct: 115 VEGETSMSRHGFDRHELAAAVAALGDLQVDGFAVHLPLTGGHLGEADRWAAALDASRLET 174 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 +SH +E + R + + Sbjct: 175 TTFFVSHLTPVELTELRE--------------RRPHLTVRPRIGTSLWLGDLAALEVRGT 220 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY------------PLTLSGLDSE 289 ++ + GE V Y + RD + V A G + G S Sbjct: 221 VLDVHAVARGEQVGYRQ-GAVHRDGHLLVIAGGTSHGVGLEAPKAAAGAVARGKSLARGG 279 Query: 290 HSPSVFLGGKGFIKGYMV-----PILGKITMDMTMFDITDSLSI-EVGDYI 334 + + G P M +M + + VGD + Sbjct: 280 LEAAGRSRSPFTVDGRQRWFVEPPH-----MQASMVFLPAGARVPAVGDTV 325 >gi|168179682|ref|ZP_02614346.1| alanine racemase, N-terminal domain protein [Clostridium botulinum NCTC 2916] gi|182669231|gb|EDT81207.1| alanine racemase, N-terminal domain protein [Clostridium botulinum NCTC 2916] Length = 355 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 109/341 (31%), Gaps = 19/341 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIRQLIDLCNIKEIKPVIVTKSFC----AEKLVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ + +L + + + + I + S + + SK Sbjct: 60 DARMKNLMKIQDL--KCEKLLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALATVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQTVVT 237 + I I+ S+ S GI+ G + + + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRENAYGQKLN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 L GE++ + + ++ A + + Sbjct: 238 ---DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIK 294 Query: 298 GKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 295 LDGLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|309389791|gb|ADO77671.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228] Length = 360 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 6/165 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ++ R+ IDL+ LK+N+ +N + V K A G +KI N+GV+ Sbjct: 2 KYPRIDIDLSKLKSNFTKLNTKCLEKKINLTVVTKGIA---GDQKIIETFINSGVKSIAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + ++ K+R Q I +L + D +++ + +K + Sbjct: 59 SRLDNIKKIRKLNYQGEIILLRIPKKTEINEAVDYIDYSLVTELESCKLLAKAANKKNKK 118 Query: 123 PYAL-QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 + VD G R G+ Q+ DF L I ++L C Sbjct: 119 IGVIVMVDIGDRREGVMPQDLTDFIQKIIKLPGLYLEGIGTNLGC 163 >gi|328883726|emb|CCA56965.1| hypothetical protein SVEN_3679 [Streptomyces venezuelae ATCC 10712] Length = 343 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 74/255 (29%), Gaps = 29/255 (11%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 V K N YG G E++A G V + E K++ + + VL G+E Sbjct: 26 VIPVCKGNGYGFGHERLADEAARFGADMLAVGTTYEAAKIKDW-FSGDLLVLTPFRRGEE 84 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + +I +SSV + V ++ + R G+ +E Sbjct: 85 PVPLPDRVIRSVSSV-------DGVHALVGARVVIECMSSMKRHGVREEELPQL---HSA 134 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-------SGILL 204 + +L HL + + L + + S Sbjct: 135 IEDVRLEGFALHLPLDRPDGTDAVEEVIGWMDRLRAARLPLHTMFVSHLRAEEQARLQQQ 194 Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 P F+ G + ++ + + G+ Y QK + Sbjct: 195 FPQTRFRARIGTRLWLGDHEATE----------YRGAVLDVTRVAKGDRFGYRQQKAAS- 243 Query: 265 DSLIAVAAIGYADGY 279 D + V A G + G Sbjct: 244 DGWLVVVAGGTSHGV 258 >gi|260772717|ref|ZP_05881633.1| predicted amino acid racemase [Vibrio metschnikovii CIP 69.14] gi|260611856|gb|EEX37059.1| predicted amino acid racemase [Vibrio metschnikovii CIP 69.14] Length = 356 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 6/165 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + RL+I+ T + +N + A V K ++ G +A NAG Sbjct: 2 NYPRLEINCTKIIHNTQYLMAELHLKAISVTPVTKASS-GH--PLLAQLFINAGATMLAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVS 121 + VE ++R + ++ Q + I + + + + S Sbjct: 59 SRVENMQRMRCSGISIPLMLIRTPMLSQIAGVISDCSISLNTEIEVIQALSDEAQRTNSD 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 H + V+ G R G+ ++ +DF + I ++LAC Sbjct: 119 HSVIIMVELGDLREGVMAKDLVDFIRRIVLLPNIIIKGIGANLAC 163 >gi|157364143|ref|YP_001470910.1| alanine racemase domain-containing protein [Thermotoga lettingae TMO] gi|157314747|gb|ABV33846.1| alanine racemase domain protein [Thermotoga lettingae TMO] Length = 356 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 104/351 (29%), Gaps = 44/351 (12%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 RL I+L L+ N + +L N V K + LG ++A + NAGV + Sbjct: 1 MPRLYINLRLLEKNTKEVLSLCSKHNVELIGVTKVS---LGDPQVAQCIRNAGVNIIGES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 VE ++ +L Q + I D ++S + + + G S Sbjct: 58 RVENIKRMVKSGINRPFMMLRIPAISQLEEIVDLCDYILVSELKTVEAIEEICKNAGKSV 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL--IISHLACADDPSSHVNSVQLE 180 VD G R G+ ++A + + + + ++ N +L Sbjct: 118 NLIYMVDVGDLREGVWYKQAEEEICKAVKICKTSRIIGVGTNLGCYGGILPTNENMAKLV 177 Query: 181 RFRTLISHYKGIEASLASSSG--------ILLGPNYHFQLTRPGISLYGGTDKINKSHPM 232 R I + S P Q + G N+ Sbjct: 178 YIRDKIEQRTNTHLPIVSGGNTAALRLLEHSDLPEGVNQYRVGEAIMLGTDVTNNRKIDW 237 Query: 233 --QTVVTAEARIILIRK---ALAGEL----VSYGGQKKLTRDSLIAVAAIGYADGYPLTL 283 Q V EA +I ++ G+ A+ A+G D P L Sbjct: 238 LEQKTVVLEAEVIEMKTKPSVPEGQSGLDAFGRQPVFVDKGLRKRAILALGEQDTVPKHL 297 Query: 284 SGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDY 333 + + + D T+ DIT+ I VGD Sbjct: 298 K--------PLDKNAEVIHA----------SSDHTIVDITEVQRQINVGDT 330 >gi|257469535|ref|ZP_05633627.1| Serine racemase [Fusobacterium ulcerans ATCC 49185] gi|317063779|ref|ZP_07928264.1| serine racemase [Fusobacterium ulcerans ATCC 49185] gi|313689455|gb|EFS26290.1| serine racemase [Fusobacterium ulcerans ATCC 49185] Length = 369 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 49/347 (14%), Positives = 107/347 (30%), Gaps = 26/347 (7%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + ++ AL+NN + + ++K ++ AG Sbjct: 1 MKKENLKTPAILLNFDALENNIKTYQKMCDDNGKELWPMIKT----HKSMELLKLQIEAG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFY 112 +++E + ++ + I + + I + ++ Sbjct: 57 ATGALCGTLDEAEACCRIGLKKIMYAYPAASKESIERIIELTKKSDFIVRLDNLEAAKMI 116 Query: 113 SKLMS-CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 + + GV Y + VD+G +R GL + + ++F + K +L + +H Sbjct: 117 NDMAIAAGVVVSYTIIVDSGLHRFGLPVDKIVEFADKLKDMKGLKLRGLSTHPGH---VY 173 Query: 172 SHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 S ++ ++ + +G L Y + P S IN HP Sbjct: 174 SATCENEVPKYIADECQTIAAAKKYMNDAGYEL--EYITSGSTPTFSEAVKDKNINVFHP 231 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEH 290 V ++ + + + ++ + + G G G S Sbjct: 232 GNYVFLDTIQLSIKKAEIKDCALTVYTTIISHPKEDLFICDAGAKCLGLDQGAHGNSSIV 291 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 +G I + +GK I +++VGD I+I Sbjct: 292 GFGTVIGHPEAIVASLSEEVGK-------LHIHGETNLKVGDKIEII 331 >gi|126698022|ref|YP_001086919.1| putative amino acid racemase [Clostridium difficile 630] gi|115249459|emb|CAJ67274.1| ornithine racemase [Clostridium difficile] Length = 354 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 10/140 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62 + RL+ID+ LK+N ++ + N + + V K ++I + + G+ Sbjct: 2 YPRLEIDIEKLKHNVKLISQMCHERNIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 + ++ L+ ++ + + + + I S + + ++ S + Sbjct: 58 SRIQNLKNLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115 Query: 122 HPYALQVDTGFNRLGLSLQE 141 H L D G R G +E Sbjct: 116 HKIVLMFDLGDLREGYFYEE 135 >gi|294630313|ref|ZP_06708873.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833646|gb|EFF91995.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 343 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 57/346 (16%), Positives = 107/346 (30%), Gaps = 46/346 (13%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SS+ + V ++V + Sbjct: 65 IKDW-FGGDLLVLTPYRRGEEPVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G++ QE + +L HL S + L + Sbjct: 117 SMKRHGVTEQELPQL---QSAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G D ++ Sbjct: 174 PLHTMFVSHLKAEELVRLQQQFPQTRFRARIGTRLWLGDHDATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGK 299 + + G+ Y QK + D + V A G + G P L G+ + V G Sbjct: 224 DVTRVAKGDRFGYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMP-RAKGVARAGL 281 Query: 300 GFIKGYMVPIL--GK-------ITMDMTMFDI-TDSLSIEVGDYIQ 335 + + P + GK M +++ + +D+ +VGD + Sbjct: 282 ATVNRNLSPFVWGGKQRWFAEPPHMQVSILFVPSDAPEPKVGDELV 327 >gi|255305459|ref|ZP_05349631.1| putative amino acid racemase [Clostridium difficile ATCC 43255] Length = 354 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62 + RL+ID+ LK+N ++ + N + + V K ++I + + G+ Sbjct: 2 YPRLEIDIEKLKHNAKLISQMCHERNIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 + ++ KL+ ++ + + + + I S + + ++ S + Sbjct: 58 SRIQNLKKLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115 Query: 122 HPYALQVDTGFNRLGLSLQE 141 H L D G R G +E Sbjct: 116 HKIVLMFDLGDLREGYFYEE 135 >gi|322806239|emb|CBZ03807.1| putative cytoplasmic protein [Clostridium botulinum H04402 065] Length = 355 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 106/339 (31%), Gaps = 15/339 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ + +L + + + + I + S + + SK Sbjct: 60 DARMKNLMKIQDL--KCEKLLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I I+ S+ S GI+ + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSNLHMIVNDSIPKGINQLRIGEAVILGTETAYGQKLN 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 L GE++ + + ++ A + + Sbjct: 238 -DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFKDKGIMKRAILALGQQDIKLD 296 Query: 300 GFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 297 GLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|168184952|ref|ZP_02619616.1| alanine racemase, N-terminal domain protein [Clostridium botulinum Bf] gi|237795407|ref|YP_002862959.1| alanine racemase, N-terminal domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182671997|gb|EDT83958.1| alanine racemase, N-terminal domain protein [Clostridium botulinum Bf] gi|229262464|gb|ACQ53497.1| alanine racemase, N-terminal domain protein [Clostridium botulinum Ba4 str. 657] Length = 355 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 108/341 (31%), Gaps = 19/341 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIRQLIDLCNIKEIKPVIVTKSFC----AEKLVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ + +L + + + + I + S + + SK Sbjct: 60 DARMKNLMKIQDL--KCEKLLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALATVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQTVVT 237 + I I+ S+ S GI+ G + + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 L GE++ + + ++ A + + Sbjct: 238 ---DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIK 294 Query: 298 GKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 295 LDGLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|240172617|ref|ZP_04751276.1| putative S-adenosylmethionine decarboxylase [Mycobacterium kansasii ATCC 12478] Length = 647 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L IDL +++N ++ A A VK N G E + L G + F V SV E Sbjct: 7 LTIDLARVRDNLQALRAALPEASIRYAVKANP-G---EPVLRLLAGEGAE-FDVASVGEI 61 Query: 69 VKLRLYTPQARIFVL 83 RL Sbjct: 62 DACRLAGIDGSRLAF 76 >gi|296327458|ref|ZP_06870004.1| serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155284|gb|EFG96055.1| serine racemase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 369 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 95/359 (26%), Gaps = 50/359 (13%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M E + +++ ALKNN L ++K +I G Sbjct: 1 MKKKELKTPTILLNIEALKNNIKKYQKLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111 +++E + ++ K I + +I + S + Sbjct: 57 ATGALCGTLDEVEACCQIGIKKIMYAYPVASEENIKRIIEISKKTEFIIRLDSLEAAIKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHL 164 + + Y + VD+G +R G +E + + S Sbjct: 117 NKMAETENIIINYNIIVDSGLHRFGVSLKNLLTFAEELKKLKYLKLKGISSHPGHVYSST 176 Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL----TRPGISLY 220 AD ++ + R I +G +S L PG ++ Sbjct: 177 CEADIQQYVLDECETLRKAKEILEKEGYYLEYITSGSTPTFEEAVKDLNINVYHPGNYVF 236 Query: 221 GGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 + INK+ +T A II + G Sbjct: 237 LDSIQLSINKAKIKDCALTVLATIISH---------PSENLFICDAGAKCLGLDQGAH-- 285 Query: 279 YPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 +V + + + +GK I ++++GD I+I Sbjct: 286 -----GNNSIVGYGTVIDHPEVIV-SSLSEEVGK-------LKIEGETNLKIGDKIEII 331 >gi|160902435|ref|YP_001568016.1| alanine racemase domain-containing protein [Petrotoga mobilis SJ95] gi|160360079|gb|ABX31693.1| alanine racemase domain protein [Petrotoga mobilis SJ95] Length = 354 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 7/198 (3%) Query: 13 LTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 L ++ N + +L ++ V K G IA AL G+ + ++ K Sbjct: 9 LERIQENAKYLKSLCADSGVEMVGVTKVV---CGEPTIARALKECGINILGDSRIQNIKK 65 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHPYALQVD 129 +R + +L + + + +IS + + S VD Sbjct: 66 MRNSGIKGPFMLLRIPMFSELDDVANYVDYTLISDLEITKKLGTVSSKFNKRSKIIYMVD 125 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLERFRTLISH 188 G R G+ ++A+ + + + ++ I ++L C N +L + + I Sbjct: 126 VGDLREGVWFEKAVSEISKALDIEGIEIVGIGTNLGCFGGVIPDESNMGRLVKIKEEIQR 185 Query: 189 YKGIEASLASSSGILLGP 206 G + S P Sbjct: 186 ETGRTLDIISGGNTAALP 203 >gi|237744998|ref|ZP_04575479.1| serine racemase [Fusobacterium sp. 7_1] gi|260494775|ref|ZP_05814905.1| serine racemase [Fusobacterium sp. 3_1_33] gi|229432227|gb|EEO42439.1| serine racemase [Fusobacterium sp. 7_1] gi|260197937|gb|EEW95454.1| serine racemase [Fusobacterium sp. 3_1_33] Length = 369 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/364 (12%), Positives = 98/364 (26%), Gaps = 60/364 (16%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAG 56 M + + +++ ALKNN L ++K +I G Sbjct: 1 MQKKDLKTPTILLNIEALKNNIKKYQNLCTEYKKELWPMIKT----HKSMEIVEMQIKEG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT-----NLIPVISSVPQLTF 111 +++E + ++ K I + +I + S + Sbjct: 57 ATGVLCGTLDEAEACCQKDVKKIMYAYPVASEENIKRIIEMSKKTEFIIRLDSLEAAIKI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLG-------LSLQEALDFTHNSFNKKLGQLSLIISHL 164 + + Y + +D+G +R G +E + + S Sbjct: 117 NKIAETENIIINYTIIIDSGLHRFGVSLKNLLTFAEELKKLKYLKLRGISSHPGHVYSST 176 Query: 165 ACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLG----PNYHFQLTRPGISLY 220 AD ++ + R + +G +S + + + PG ++ Sbjct: 177 CEADIHQYVLDECETLRKAKELLEKEGYYLKYITSGSTPTFEEAVKDSNINVYHPGNYVF 236 Query: 221 GGTD--KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD- 277 + INK+ +T A II + G Sbjct: 237 LDSIQLSINKAKIKDCALTVLATIISH---------PSENLFICDAGAKCLGLDQGAHGN 287 Query: 278 ----GYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDY 333 GY ++ + GK I+G ++++GD Sbjct: 288 SSIIGYGTVINHPEIIVFSLSEEVGKLKIEGQT--------------------NLKIGDK 327 Query: 334 IQIF 337 I+I Sbjct: 328 IEII 331 >gi|19553808|ref|NP_601810.1| hypothetical protein NCgl2520 [Corynebacterium glutamicum ATCC 13032] gi|62391448|ref|YP_226850.1| hypothetical protein cg2890 [Corynebacterium glutamicum ATCC 13032] gi|41326789|emb|CAF21271.1| PUTATIVE AMINO ACID PROCESSING ENZYME [Corynebacterium glutamicum ATCC 13032] Length = 343 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 33/128 (25%), Gaps = 6/128 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID L N M A +G A VK +IA +AG + ++ E Sbjct: 10 IDRERLTANISRMAAHAGAHEIALRPHVKT----HKIIEIAQMQVDAGARGITCATIGEA 65 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + + V + ++V Sbjct: 66 EIFAGAGFTDIFIAYPLYLTDHAVQRLNAIPGEISIGVDSVEMAQATAGLREDIKALIEV 125 Query: 129 DTGFNRLG 136 D+G R G Sbjct: 126 DSGHRRSG 133 >gi|239980811|ref|ZP_04703335.1| hypothetical protein SalbJ_15302 [Streptomyces albus J1074] gi|291452670|ref|ZP_06592060.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291355619|gb|EFE82521.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 343 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 56/346 (16%), Positives = 109/346 (31%), Gaps = 46/346 (13%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D +++ H + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRDHHHQVREQFPG--IVPVCKGNGYGFGHERLAEEAIRFGSDILAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SSV + V ++V + Sbjct: 65 IKDW-FSGDLLVLTPFRRGEEPVPLPDRVIRSVSSVDGVHGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S ++ + +L HL + + L +H Sbjct: 117 SMKRHGVSEEDLPKL---HAAIEDVRLEGFAIHLPLDRTDGTDAVEEVIAWMDRLRAHRL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKSSELARLQQQFPQTRFRARIGTRLWLGDEEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGK 299 + + G+ Y +K D + V A G + G P L G+ + V G Sbjct: 224 DVTQVSKGDRFGYRQ-QKAAGDGYLVVVAGGTSHGVGLESPKALHGVMP-RAKGVARAGL 281 Query: 300 GFIKGYMVPIL--GK-------ITMDMTMFDIT-DSLSIEVGDYIQ 335 + + P + GK M +++ + D+ + +VGD + Sbjct: 282 ATVNRNLSPFVWAGKQRWFAEPPHMQVSILFVPADAPAPQVGDELV 327 >gi|297544519|ref|YP_003676821.1| alanine racemase domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842294|gb|ADH60810.1| alanine racemase domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 354 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 118/352 (33%), Gaps = 51/352 (14%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L+I+L L+ N ++ L N + V K G +IA A+ GV+ + Sbjct: 2 YPLLRINLRKLRKNTQTIVNLCEKRNIKVVGVTKVF---CGIPEIAQAMVKGGVEILGDS 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-H 122 ++ KL ++ + + + I + S + + S+ H Sbjct: 59 RIKNLKKL--QHIPVFKMLIRIPMISEVEEVIKYADISLNSEIDTIKSLSEEAKKHKKVH 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLER 181 L VD G R G+ ++ + + +L + ++L C + +L Sbjct: 117 EIILMVDLGDLREGMLKEDVIPAVEQIVKLEGIKLRGVGTNLTCYGSVIPTPDILEELVE 176 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEA 240 + I+ + + S G + L + G+ G T +I ++ + Sbjct: 177 IKNSINKKFDLNVDIVSG-----GNSSSLYLVQNGLIPKGITQLRIGEAIVLGRETAFGD 231 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI + + + + S YP + G+++ V++ Sbjct: 232 RIPHTYDDVF--TLETQIIELKEKPS------------YPRGILGVNAFGERPVYVDRGI 277 Query: 301 FIKGYMVPILGK--ITM-----------------DMTMFDITDSL-SIEVGD 332 + + +G+ + M D + ++T+S +VGD Sbjct: 278 MKRAILA--IGRQDVNMGDLIPIDSTIELIGASSDHLIVNVTNSPYPYKVGD 327 >gi|302543988|ref|ZP_07296330.1| alanine racemase domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302461606|gb|EFL24699.1| alanine racemase domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 343 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 83/287 (28%), Gaps = 36/287 (12%) Query: 22 SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81 + G V K N YG G E++A G V + E +++ Y + Sbjct: 19 VIQQFPG---IVPVCKGNGYGFGHERLAEEAARIGADVLAVGTTYEAARMKDY-FSGDLL 74 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141 VL G+E + +I +SSV + V+ ++V + R G++ ++ Sbjct: 75 VLTPFRRGEEPVPLPDRVIRSVSSVDGVYGL-------VNARVVIEVMSSMKRHGVTEED 127 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-- 199 + +L HL + L + + S Sbjct: 128 LPKL---HAAIENVRLEGFAIHLPLDRTDGIDAVEEVIGWMDRLRAARLPLHTMFVSHLK 184 Query: 200 -----SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254 P F+ G + ++ + + GE Sbjct: 185 ADELARLQQQFPQTRFRARIGTRLWLGDHESTE----------YRGAVLDVTRVAKGERF 234 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 Y QK + D + V A G + G P L G+ G Sbjct: 235 GYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|170755191|ref|YP_001781537.1| alanine racemase domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120403|gb|ACA44239.1| alanine racemase, N-terminal domain protein [Clostridium botulinum B1 str. Okra] Length = 355 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 49/341 (14%), Positives = 106/341 (31%), Gaps = 19/341 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K+ +L + + + + + + S + + SK Sbjct: 60 DARMKNLMKI--QGLNCEKLLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTNLTCYGGVLPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQTVVT 237 + I I+ S+ S GI+ G + + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 L GE++ + + ++ A + + Sbjct: 238 ---DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIK 294 Query: 298 GKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 295 LDGLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|21325381|dbj|BAC00003.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 380 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 33/128 (25%), Gaps = 6/128 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID L N M A +G A VK +IA +AG + ++ E Sbjct: 47 IDRERLTANISRMAAHAGAHEIALRPHVKT----HKIIEIAQMQVDAGARGITCATIGEA 102 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + + V + ++V Sbjct: 103 EIFAGAGFTDIFIAYPLYLTDHAVQRLNAIPGEISIGVDSVEMAQATAGLREDIKALIEV 162 Query: 129 DTGFNRLG 136 D+G R G Sbjct: 163 DSGHRRSG 170 >gi|289523186|ref|ZP_06440040.1| amino acid racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503729|gb|EFD24893.1| amino acid racemase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 368 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAA--VVKDNAYGL-GCEKIAPALYNAGV 57 M SN +L+I L +++N + L A V K GL G K+A A+ + G Sbjct: 9 MGSN--PKLRIGLEKIRDNASKVVELCKKTGIRAGGVTK----GLCGNLKVAEAMVDGGC 62 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLM 116 + V+ L+ +L P + + + ++S + Sbjct: 63 SFLADSRVKNIANLKREGMNVPCMLLRLPMPSETDAVVTWADVSLVSMGETILLLDEACK 122 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEAL 143 H + VD G R G+ + Sbjct: 123 IKNKFHEVVVMVDVGDLREGIWPSDVE 149 >gi|297200915|ref|ZP_06918312.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197716413|gb|EDY60447.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 343 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 86/298 (28%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SS+ + V ++V + Sbjct: 65 IKDW-FGGDLLVLTPYRRGEEPVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S QE + +L HL S + L + Sbjct: 117 SMKRHGISEQELPQL---HAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G D ++ Sbjct: 174 PLHTMFVSHLKAEDLARLQQQFPQTRFRARIGTRLWLGDHDSTE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + G+ Y QK + D + V A G + G P L G+ G Sbjct: 224 DVTRVSKGDRFGYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|150389494|ref|YP_001319543.1| alanine racemase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949356|gb|ABR47884.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF] Length = 367 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 11/162 (6%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL L+ N M L+ +VK E I G + + Sbjct: 11 LVVDLDQLEKNIEEMGVLAKDHGVALWPMVKT----HKSEYIVKKQLENGAEGVLAAKLG 66 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-----CGVS 121 E K+ + + I G+ K + + +++++ G+ Sbjct: 67 EAEKMVEAGAKKVMMAYPIIGEGKLKRLVALTEKAEVFCSIDSLEVAEILNEKAITEGIV 126 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163 + +D+G RLG++ E F ++ + ++ + +H Sbjct: 127 FQCIILIDSGLKRLGIAPHEVKKFYNSLARLQGIKIVGVGTH 168 >gi|254974063|ref|ZP_05270535.1| putative amino acid racemase [Clostridium difficile QCD-66c26] gi|255091462|ref|ZP_05320940.1| putative amino acid racemase [Clostridium difficile CIP 107932] gi|255313189|ref|ZP_05354772.1| putative amino acid racemase [Clostridium difficile QCD-76w55] gi|255515880|ref|ZP_05383556.1| putative amino acid racemase [Clostridium difficile QCD-97b34] gi|255648975|ref|ZP_05395877.1| putative amino acid racemase [Clostridium difficile QCD-37x79] gi|260682166|ref|YP_003213451.1| putative amino acid racemase [Clostridium difficile CD196] gi|260685765|ref|YP_003216898.1| putative amino acid racemase [Clostridium difficile R20291] gi|306519091|ref|ZP_07405438.1| putative amino acid racemase [Clostridium difficile QCD-32g58] gi|260208329|emb|CBA60794.1| putative amino acid racemase [Clostridium difficile CD196] gi|260211781|emb|CBE02143.1| putative amino acid racemase [Clostridium difficile R20291] Length = 354 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62 + RL+ID+ LK+N ++ + + + + V K ++I + + G+ Sbjct: 2 YPRLEIDIEKLKHNAKLISQMCHERSIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 + ++ KL+ ++ + + + + I S + + ++ S + Sbjct: 58 SRIQNLKKLQD--INLPKILIRIPMLSELEEVINYCDISFNSELETIKKLNELCESKNII 115 Query: 122 HPYALQVDTGFNRLGLSLQE 141 H L D G R G +E Sbjct: 116 HKIVLMFDLGDLREGYFYEE 135 >gi|255099568|ref|ZP_05328545.1| putative amino acid racemase [Clostridium difficile QCD-63q42] Length = 354 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 10/140 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGC-EKIAPALYNAGVQDFFV 62 + RL+ID+ LK+N ++ + N + + V K ++I + + G+ Sbjct: 2 YPRLEIDIEKLKHNAKLISQMCHERNIKISFVTKSFC----AQKEIVEEICSEGIDHIAD 57 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK-LMSCGVS 121 + ++ L+ ++ + + + + I S + + ++ S + Sbjct: 58 SRIQNLKNLQD--INLPKILIRIPMLSELEEVINYCDISFNSELGTIKKLNELCESKNII 115 Query: 122 HPYALQVDTGFNRLGLSLQE 141 H L D G R G +E Sbjct: 116 HKIVLMFDLGDLREGYFYEE 135 >gi|310815799|ref|YP_003963763.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25] gi|308754534|gb|ADO42463.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25] Length = 374 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 6/132 (4%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ID L+ N M AL+G A +K IA AG EE + Sbjct: 20 IDQPTLQRNIDKMQALAGVAALWPHIKT----HKSPAIAQMQKTAGATGLTAALTEEALA 75 Query: 71 LRLYTPQARIFVLYGIHPGQEKI--IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + I P Q + + +++ Sbjct: 76 MIDAGLGPVTLARPEIDPAQIARLLPHAYAGQLRFTVDHADHIAAIAAQAEGPVDILIKI 135 Query: 129 DTGFNRLGLSLQ 140 D G +R+G+ Sbjct: 136 DVGLHRMGIGPD 147 >gi|255994841|ref|ZP_05427976.1| putative cytoplasmic protein [Eubacterium saphenum ATCC 49989] gi|255993554|gb|EEU03643.1| putative cytoplasmic protein [Eubacterium saphenum ATCC 49989] Length = 359 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 7/141 (4%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFF 61 N + RL I+ A+++N + L + V K + K+ ++ F Sbjct: 2 NRYPRLVINAEAIEHNTRLVQQLCRDNGIMLSVVTKGFS---SMPKLVSSISKIN-PIFS 57 Query: 62 VTSVEEGVKLRLYTPQAR-IFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 + +E ++R + + E +I + N+ + F Sbjct: 58 DSRIETIKQMREAGINGHITLIRSPMMSEAEDVINNCNMSFHVDKAVLKHFDEVAGRLSK 117 Query: 121 SHPYALQVDTGFNRLGLSLQE 141 H L D G R G E Sbjct: 118 KHDVLLMCDVGDLREGPFYDE 138 >gi|289578239|ref|YP_003476866.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9] gi|289527952|gb|ADD02304.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9] Length = 354 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 115/339 (33%), Gaps = 25/339 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + L+I+L L+ N ++ L N + V K G +IA A+ GV+ + Sbjct: 2 YPLLRINLRKLRKNTQTIVNLCEKRNIKVVGVTKVF---CGIPEIAQAMVKGGVEILGDS 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS-H 122 ++ KL ++ + + + I + S + + S+ H Sbjct: 59 RIKNLKKL--QHIPVFKMLIRIPMISEVEEVIKYADISLNSEIDTIKSLSEEAKKHKKVH 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLER 181 L VD G R G+ ++ + + +L + ++L C + +L Sbjct: 117 EIILMVDLGDLREGMLKEDVIPAVEQIVKLEGIKLRGVGTNLTCYGSVIPTPDILEELVE 176 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVTAEA 240 + I+ + + S G + L + G+ G T +I ++ + Sbjct: 177 IKNSINKKFDLNVDIVSG-----GNSSSLYLVQNGLIPKGITQLRIGEAIVLGRETAFGD 231 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RI + + + + S A G + +G + Sbjct: 232 RIPHTYDDVF--TLETQIIELKEKPSYPRGILGVNAFGERPVYVDRGIMKRAILAIGRQD 289 Query: 301 FIKGYMVPI------LGKITMDMTMFDITDSL-SIEVGD 332 G ++PI +G + D + ++T+S +VGD Sbjct: 290 VYMGDLIPIDSTIELIGASS-DHLIVNVTNSPYPYKVGD 327 >gi|268315648|ref|YP_003289367.1| alanine racemase domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333182|gb|ACY46979.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252] Length = 396 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 23/175 (13%) Query: 11 IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ID L N M + +A+T ++A G V Sbjct: 14 IDRQRLLGNLREMQQRATQEGVALRPHAKT----------HKTPELARLQQELGATGITV 63 Query: 63 TSVEEGVKLRLYTPQ----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMS 117 +V+E A V + ++ + + + + S + Sbjct: 64 ATVDEAEAFVAAGLTDVRVAYPTVGIDRYERLLALMAQARISFCLDTPEAIRAASDFFAA 123 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 G L+VDTGF R G+ +A + + +I L A Sbjct: 124 RGRQAEVLLEVDTGFGRTGVRWDDARRLVDCARLIQESPGLRLIGLLTHAGQAYH 178 >gi|302559690|ref|ZP_07312032.1| alanine racemase domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302477308|gb|EFL40401.1| alanine racemase domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 343 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 57/346 (16%), Positives = 106/346 (30%), Gaps = 46/346 (13%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SSV + V ++V + Sbjct: 65 IKDW-FGGDLLVLTPYRRGEEPVPLPDRVIRSVSSVDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+ Q+ + +L HL S + L + Sbjct: 117 SMKRHGIGEQDLAQL---HAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G D ++ Sbjct: 174 PLHTMFVSHLKADELARLQQQFPQTRFRARIGTRLWLGDHDATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGK 299 + + G+ Y QK + D + V A G + G P L G+ + V G Sbjct: 224 DVTRVAKGDRFGYRQQKAAS-DGYLVVVAGGTSHGVGLEAPKALHGVMP-RAKGVARAGL 281 Query: 300 GFIKGYMVPIL--GK-------ITMDMTMFDI-TDSLSIEVGDYIQ 335 + + P + GK M +++ + +D+ +VGD + Sbjct: 282 ATVNRNLSPFVWGGKQRWFAEPPHMQVSILFVPSDAPEPQVGDELV 327 >gi|330895722|gb|EGH28012.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 31 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFYT 370 +VA + T Y++ + R + Y+ Sbjct: 3 ASEVAQRAETIPYEIFCNL-RRVPRIYS 29 >gi|193216675|ref|YP_001999917.1| alanine racemase-like protein [Mycoplasma arthritidis 158L3-1] gi|193001998|gb|ACF07213.1| alanine racemase-like protein [Mycoplasma arthritidis 158L3-1] Length = 352 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 9/202 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + R+ I+ KNN + + N AV K +G ++A Y AG++ F + Sbjct: 2 YPRIVINEAKFKNNIKKAIEICKAKNIEVLAVTKGF---VGQRRMAELYYEAGIRYFGDS 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 ++ ++ P + + + + + + + + + + H Sbjct: 59 RLDN-FEVYKDIPGHKQMLRLPML-EEIPRLVELCDSSLNGDLTIIKAISEYCLKVNKVH 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP-SSHVNSVQLER 181 L +D G R G+ ++ L + L I + C S + Sbjct: 117 DIVLMIDMGDRREGILPEDTLKVVKEILEYRGVNLIGIGCNFGCYGARVPSKETMDKFVS 176 Query: 182 FRTLISHYKGIEASLASSSGIL 203 + I ++ S L Sbjct: 177 LKKAIETTYNLKLKHISGGNSL 198 >gi|295111090|emb|CBL27840.1| Predicted amino acid racemase [Synergistetes bacterium SGP1] Length = 371 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 113/342 (33%), Gaps = 29/342 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQD 59 + ++++DL L N ++ L + + V K E + AL +AG+++ Sbjct: 2 RYPQIRVDLDKLLENARVLSGLLSAHKLKFHYVTKCFCAW------EPMVDALADAGIRN 55 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 F +E L+ + A + + I + + + +V + + ++ G Sbjct: 56 FADARLENIEVLKRWARSAMLLRVPMISEADDVVCLCDVSLNSELAVIEALSDA-ALTLG 114 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQ 178 +H L V+ G R G ++ + + +L+ + + C + + Sbjct: 115 RTHEVILMVELGDLREGALPEDVMPMVEQILTMRGVKLAGLGVNFNCYGGVIPTPAKLKE 174 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 L + G E S P GI+ +I ++ + + Sbjct: 175 LADLAKEAQNRCGYEFEYVSGGNSGSLPLVFDDRIPSGINHL----RIGEAFLLGHETSY 230 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + I + + +KKL + P + + +GG Sbjct: 231 GSSIPGMLHDVFTLRCEV-IEKKLKHSVPSGERGLNAFGEPPAEMEDRGMIQRAIIAVGG 289 Query: 299 KGFI--------KGYMVPILGKITMDMTMFDITDSL-SIEVG 331 + +G LG + D T+FD+T + + VG Sbjct: 290 QDTFPFSLTPRMEGLRY--LGHYSSDHTIFDVTHAKGDVHVG 329 >gi|170692411|ref|ZP_02883574.1| alanine racemase domain protein [Burkholderia graminis C4D1M] gi|170142841|gb|EDT11006.1| alanine racemase domain protein [Burkholderia graminis C4D1M] Length = 380 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 + S E +D+ ++ N +M + + VK C ++A A AG + Sbjct: 3 LDSQETPAAIVDVRKMEKNIAAMQERMNALGVKFRPHVKT----SKCVEVAQAQIAAGAR 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYS 113 V++++E ++ + + +++ I V ++ L Sbjct: 59 GITVSTLKEAESFFAAGIVDILYAVSIVPSKLPRVMALRKRGCDLKIVVDNASAALAIVE 118 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDF 145 + G S ++VDT +R GL +E Sbjct: 119 FCKTAGESLEVWIEVDTDGHRSGLKPEEDALL 150 >gi|312883710|ref|ZP_07743433.1| alanine racemase domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368627|gb|EFP96156.1| alanine racemase domain-containing protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 368 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 6/109 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL + N +M + K IA +AG + V + Sbjct: 11 LLVDLDKMNQNIETMQQRINDLGLMLRPHTKA----HKSPIIAQRQIDAGAKGICVAKLG 66 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 E + + + + + + L Q+ + Sbjct: 67 EAEVMAEGGISDILITTPIAGEKKIQRLINLYLKYPDFRFIQVIDHHDH 115 >gi|73662017|ref|YP_300798.1| amino acid racemase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494532|dbj|BAE17853.1| putative amino acid racemase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 353 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 73/209 (34%), Gaps = 9/209 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++KI+L+ +K N ++++ + R AV+K G +I L G+ F Sbjct: 1 MAQVKINLSKIKYNAQVLSSIFNQNHIRFTAVIKCVG---GDNRIVETLKEIGLTHFADA 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 +E K + ++ + + I + + + + + + G H Sbjct: 58 RIENITKSKNE--DLSFMMIRTPSRSELNDVVQQTDISIQTEITTIRRLNDIAREKGTKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + +D+ + + + + C + + + + Sbjct: 116 KILLMVDWKDGREGILTYDIIDYINEILYMHHVSIVGLAFNFMCFQSVIPTEEDVALINQ 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHF 210 F + ++ S+ S + P + Sbjct: 176 FVDSVERETNMKFSIISGGNSSMIPQMLY 204 >gi|302552670|ref|ZP_07305012.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302470288|gb|EFL33381.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 343 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 86/298 (28%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SS+ + V ++V + Sbjct: 65 IKDW-FGGDLLVLTPYRRGEEPVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMKRHGISEQDLPQL---HAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKAEELVRLQQQFPQTRFRARIGTRLWLGDHEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + GE Y QK + D + V A G + G P L G+ G Sbjct: 224 DVSRVTKGERFGYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|148379935|ref|YP_001254476.1| alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|153933254|ref|YP_001384234.1| alanine racemase domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153937081|ref|YP_001387774.1| alanine racemase domain-containing protein [Clostridium botulinum A str. Hall] gi|148289419|emb|CAL83515.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502] gi|152929298|gb|ABS34798.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A str. ATCC 19397] gi|152932995|gb|ABS38494.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A str. Hall] Length = 355 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 108/341 (31%), Gaps = 19/341 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----SEKSVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ + +L + + + + I + S + + SK Sbjct: 60 DARMKNLMKIQDL--KCEKLLLRIPMKSEVSKVIEYSDISLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQTVVT 237 + I I+ S+ S GI+ G + + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 L GE++ + + ++ A + + Sbjct: 238 ---DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIK 294 Query: 298 GKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 295 LDGLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|187779411|ref|ZP_02995884.1| hypothetical protein CLOSPO_03007 [Clostridium sporogenes ATCC 15579] gi|187773036|gb|EDU36838.1| hypothetical protein CLOSPO_03007 [Clostridium sporogenes ATCC 15579] Length = 355 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 105/345 (30%), Gaps = 29/345 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART-AAVV-------KDNAYGLGCEKIAPALYNAGV 57 + ++I+L + N + L A A+V K + + G+ Sbjct: 5 YPCVEINLKNITYNIGRLIDLCNGAGIELAIVTKSFCAEKA---------VVETIIKEGI 55 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 + ++ +K++ +L + + + I + S + + SK Sbjct: 56 KTIADARMKNLMKIQDL--NCEKLLLRIPMKSEVSKVIEYADISLNSELEIIKELSKEAM 113 Query: 118 C-GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVN 175 H L +D G R G+ ++ L + + ++L C N Sbjct: 114 KVNKIHKIILMIDLGDLREGILPKDVLPTVKEIIKLPNLEFVGVGTNLTCYGGVIPDENN 173 Query: 176 SVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQ 233 +L + I + I+ S+ S GI+ G + + Sbjct: 174 LGKLLEIKNQIENELKIKVSIVSGGNSSSLHMIVNDSIPQGINQLRIGEAAILGRETAFG 233 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 + L GE+V + + ++ A + Sbjct: 234 QKLDNFYE---DCVTLVGEIVELKEKPSMPEGNIGLDAFGNKPSFIDKGIMKRAILALGQ 290 Query: 294 VFLGGKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 + G I K + ILG + D + D+T + ++GD ++ Sbjct: 291 QDIKLDGLIPKNSEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|153938559|ref|YP_001391298.1| alanine racemase domain-containing protein [Clostridium botulinum F str. Langeland] gi|152934455|gb|ABS39953.1| alanine racemase, N-terminal domain protein [Clostridium botulinum F str. Langeland] gi|295319329|gb|ADF99706.1| alanine racemase, N-terminal domain protein [Clostridium botulinum F str. 230613] Length = 355 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 49/341 (14%), Positives = 106/341 (31%), Gaps = 19/341 (5%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIKQLIDLCNMKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ +L + + + + + + S + + SK Sbjct: 60 DARMKNLMKIQDL--NCEKLLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ +AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPNDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISL--YGGTDKINKSHPMQTVVT 237 + I I+AS+ S GI+ G + + + Sbjct: 178 LEIKNQIEKELKIKASIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLN 237 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 L GE++ + + ++ A + + Sbjct: 238 ---DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIK 294 Query: 298 GKGFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 I K + ILG + D + D+T + ++GD ++ Sbjct: 295 LDDLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDTVEF 334 >gi|262381465|ref|ZP_06074603.1| D-threonine aldolase [Bacteroides sp. 2_1_33B] gi|262296642|gb|EEY84572.1| D-threonine aldolase [Bacteroides sp. 2_1_33B] Length = 367 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 23/154 (14%) Query: 10 KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 +ID AL N + G+ R VK N +++ L +AG++ F Sbjct: 12 RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQ---------EKIIFDTNLIPVISSVPQLTFY 112 ++ E L A +L G + V + Sbjct: 68 CATIAEAEML--GHINAPDVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAIS 125 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 + + ++ + ++ G NR G+ + A Sbjct: 126 ALCEAGNITLDVFIDLNVGMNRTGVLPERAEALV 159 >gi|301309990|ref|ZP_07215929.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides sp. 20_3] gi|300831564|gb|EFK62195.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides sp. 20_3] Length = 367 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 23/154 (14%) Query: 10 KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 +ID AL N + G+ R VK N +++ L +AG++ F Sbjct: 12 RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQ---------EKIIFDTNLIPVISSVPQLTFY 112 ++ E L A +L G + V + Sbjct: 68 CATIAEAEML--GHINAPDVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAIS 125 Query: 113 SKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 + + ++ + ++ G NR G+ + A Sbjct: 126 ALCEAGNITLDVFIDLNVGMNRTGVLPERAEALV 159 >gi|226949272|ref|YP_002804363.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A2 str. Kyoto] gi|226843119|gb|ACO85785.1| alanine racemase, N-terminal domain protein [Clostridium botulinum A2 str. Kyoto] Length = 355 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 106/339 (31%), Gaps = 15/339 (4%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVV--KDNAYGLGCEK-IAPALYNAGVQDFF 61 + ++I+L + +N + L V+ K EK + + G++ Sbjct: 4 SYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFC----AEKSVVETIIKEGIKTIA 59 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GV 120 ++ +K++ + +L + + + + I + S + + SK Sbjct: 60 DARMKNLMKIQDL--KCEKLLLRIPMKSEVTKVIEYSDISLNSELEIIKELSKEARKVNK 117 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQL 179 H L VD G R G+ ++AL + + ++L C N +L Sbjct: 118 IHKIILMVDLGDLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKL 177 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE 239 + I I+ S+ S GI+ + + Sbjct: 178 LEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAVILGTETAYGQKLN 237 Query: 240 ARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGK 299 L GE++ + + ++ A + + Sbjct: 238 -DFYEDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIKLD 296 Query: 300 GFI-KGYMVPILGKITMDMTMFDITDSLS-IEVGDYIQI 336 G I K + ILG + D + D+T + ++GD ++ Sbjct: 297 GLIPKDNEIEILGASS-DHLLLDLTKCKNQYKIGDAVEF 334 >gi|239930199|ref|ZP_04687152.1| hypothetical protein SghaA1_18362 [Streptomyces ghanaensis ATCC 14672] gi|291438542|ref|ZP_06577932.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291341437|gb|EFE68393.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 343 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 57/346 (16%), Positives = 107/346 (30%), Gaps = 46/346 (13%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SSV + V ++V + Sbjct: 65 IKDW-FSGDLLVLTPYRRGEEPVPLPDRVIRSVSSVDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMKRHGISEQDLPQL---HAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKADELARLQQQFPQTRFRARIGTRLWLGDHEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGK 299 + + G+ Y QK + D + V A G + G P L G+ + V G Sbjct: 224 DVTRVAKGDRFGYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMP-RAKGVARAGL 281 Query: 300 GFIKGYMVPIL--GK-------ITMDMTMFDI-TDSLSIEVGDYIQ 335 + + P + GK M +++ + TD+ +VG+ + Sbjct: 282 ATVNRNLSPFVWGGKQRWFAEPPHMQVSILFVPTDAPEPKVGEELV 327 >gi|329938663|ref|ZP_08288059.1| hypothetical protein SGM_3551 [Streptomyces griseoaurantiacus M045] gi|329302154|gb|EGG46046.1| hypothetical protein SGM_3551 [Streptomyces griseoaurantiacus M045] Length = 343 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 51/311 (16%), Positives = 92/311 (29%), Gaps = 36/311 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHQKHVQDQFPG--LVPVCKGNGYGFGHERLAEEATRMGSDILAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SS+ + V ++V + Sbjct: 65 IKDW-FGGDLLVLTPFRRGEEPVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMKRHGVSEQDLPQL---HSAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKADELARLQQQFPQTRFRARIGTRLWLGDHEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGK 299 + + GE Y QK T D + V A G + G P L G+ + V G Sbjct: 224 DVTRVAKGERFGYRQQKAAT-DGYLVVVAGGTSHGVGLEAPKALHGVMP-RAKGVARAGL 281 Query: 300 GFIKGYMVPIL 310 + + P + Sbjct: 282 ATVNRNLAPFV 292 >gi|302333818|gb|ADL24011.1| alanine racemase [Staphylococcus aureus subsp. aureus JKD6159] Length = 356 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVQTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|15925168|ref|NP_372702.1| hypothetical protein SAV2178 [Staphylococcus aureus subsp. aureus Mu50] gi|15927758|ref|NP_375291.1| hypothetical protein SA1980 [Staphylococcus aureus subsp. aureus N315] gi|148268623|ref|YP_001247566.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150394688|ref|YP_001317363.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|156980493|ref|YP_001442752.1| hypothetical protein SAHV_2162 [Staphylococcus aureus subsp. aureus Mu3] gi|253734405|ref|ZP_04868570.1| amino acid racemase [Staphylococcus aureus subsp. aureus TCH130] gi|255006961|ref|ZP_05145562.2| hypothetical protein SauraM_10850 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793382|ref|ZP_05642361.1| alanine racemase [Staphylococcus aureus A9781] gi|258406992|ref|ZP_05680144.1| alanine racemase [Staphylococcus aureus A9763] gi|258419926|ref|ZP_05682886.1| alanine racemase domain-containing protein [Staphylococcus aureus A9719] gi|258439259|ref|ZP_05690237.1| alanine racemase domain-containing protein [Staphylococcus aureus A9299] gi|258442161|ref|ZP_05691064.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446720|ref|ZP_05694875.1| alanine racemase domain-containing protein [Staphylococcus aureus A6300] gi|258449221|ref|ZP_05697326.1| alanine racemase domain-containing protein [Staphylococcus aureus A6224] gi|258455466|ref|ZP_05703426.1| alanine racemase domain-containing protein [Staphylococcus aureus A5937] gi|269203811|ref|YP_003283080.1| hypothetical protein SAAV_2239 [Staphylococcus aureus subsp. aureus ED98] gi|282895244|ref|ZP_06303459.1| hypothetical protein SGAG_02579 [Staphylococcus aureus A8117] gi|282929326|ref|ZP_06336895.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295407642|ref|ZP_06817432.1| hypothetical protein SMAG_02813 [Staphylococcus aureus A8819] gi|296275834|ref|ZP_06858341.1| hypothetical protein SauraMR_05782 [Staphylococcus aureus subsp. aureus MR1] gi|297246640|ref|ZP_06930469.1| hypothetical protein SLAG_02704 [Staphylococcus aureus A8796] gi|13701978|dbj|BAB43270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247951|dbj|BAB58340.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147741692|gb|ABQ49990.1| alanine racemase domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149947140|gb|ABR53076.1| alanine racemase domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156722628|dbj|BAF79045.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253727635|gb|EES96364.1| amino acid racemase [Staphylococcus aureus subsp. aureus TCH130] gi|257787354|gb|EEV25694.1| alanine racemase [Staphylococcus aureus A9781] gi|257841402|gb|EEV65844.1| alanine racemase [Staphylococcus aureus A9763] gi|257844078|gb|EEV68467.1| alanine racemase domain-containing protein [Staphylococcus aureus A9719] gi|257847697|gb|EEV71695.1| alanine racemase domain-containing protein [Staphylococcus aureus A9299] gi|257852091|gb|EEV76022.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854788|gb|EEV77736.1| alanine racemase domain-containing protein [Staphylococcus aureus A6300] gi|257857524|gb|EEV80420.1| alanine racemase domain-containing protein [Staphylococcus aureus A6224] gi|257862677|gb|EEV85445.1| alanine racemase domain-containing protein [Staphylococcus aureus A5937] gi|262076101|gb|ACY12074.1| hypothetical protein SAAV_2239 [Staphylococcus aureus subsp. aureus ED98] gi|282589094|gb|EFB94194.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282762395|gb|EFC02540.1| hypothetical protein SGAG_02579 [Staphylococcus aureus A8117] gi|285817840|gb|ADC38327.1| Hypothetical protein SA2981_2116 [Staphylococcus aureus 04-02981] gi|294967501|gb|EFG43540.1| hypothetical protein SMAG_02813 [Staphylococcus aureus A8819] gi|297176500|gb|EFH35767.1| hypothetical protein SLAG_02704 [Staphylococcus aureus A8796] gi|312830526|emb|CBX35368.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129747|gb|EFT85738.1| hypothetical protein CGSSa03_09560 [Staphylococcus aureus subsp. aureus CGS03] gi|329728008|gb|EGG64454.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus subsp. aureus 21172] Length = 356 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|150007967|ref|YP_001302710.1| D-threonine aldolase [Parabacteroides distasonis ATCC 8503] gi|256840860|ref|ZP_05546368.1| D-threonine aldolase [Parabacteroides sp. D13] gi|298376682|ref|ZP_06986637.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides sp. 3_1_19] gi|149936391|gb|ABR43088.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Parabacteroides distasonis ATCC 8503] gi|256738132|gb|EEU51458.1| D-threonine aldolase [Parabacteroides sp. D13] gi|298266560|gb|EFI08218.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides sp. 3_1_19] Length = 367 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 19/152 (12%) Query: 10 KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 +ID AL N + G+ R VK N +++ L +AG++ F Sbjct: 12 RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEK-------IIFDTNLIPVISSVPQLTFYSK 114 ++ E L + + P + V + + Sbjct: 68 CATIAEAEMLGHMNAPDVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAISAL 127 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 + ++ + ++ G NR G+ + A Sbjct: 128 CEAGNITLDVFIDLNVGMNRTGVLPERAEALV 159 >gi|255013342|ref|ZP_05285468.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides sp. 2_1_7] Length = 367 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 19/152 (12%) Query: 10 KIDLTALKN-------NWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 +ID AL N + G+ R VK N +++ L +AG++ F Sbjct: 12 RIDSPALAFYPDRISGNIELAKRIIGDTNRLRPHVKTN----KAAEVSRMLLDAGIRKFK 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEK-------IIFDTNLIPVISSVPQLTFYSK 114 ++ E L + + P + V + + Sbjct: 68 CATIAEAEMLGHMNAPDVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENARAISAL 127 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFT 146 + ++ + ++ G NR G+ + A Sbjct: 128 CEAGNITLDVFIDLNVGMNRTGVLPERAEALV 159 >gi|70725863|ref|YP_252777.1| hypothetical protein SH0862 [Staphylococcus haemolyticus JCSC1435] gi|68446587|dbj|BAE04171.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 355 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 46/335 (13%), Positives = 107/335 (31%), Gaps = 28/335 (8%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ I+L+ ++ N ++ L + + V+K A G +I L +G F + Sbjct: 1 MAQININLSKIEYNADALRTLLENNDIHLTPVIKCIA---GDSRIIETLIQSGFTHFAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 +E + + Q +L + + + + + + + + + + H Sbjct: 58 RLENINE--DFKGQCNYLLLRPTSKNRYTQLIKSVKMSMQTEIESIREINDIAKQLNQKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L +D R G+ + L++ QL I + C + + +++ + Sbjct: 116 QIMLMIDWKDRREGVITYDVLNYIEEIIKMTHIQLIGIAFNFMCFKSSAPTEEDILKINQ 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F I + G + S + P + + Sbjct: 176 FVDAIEYNLGFRLKVVSGGNSSMIPQLMYN-----------------DLGRINELRIGEA 218 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + + + Q +T ++ I +D L + + Sbjct: 219 LFRGIDTTTNQSIPMLFQNAITVEAEILEIKPRLSDNNQCYLQAIVDIGYVDTDVNKIKP 278 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI 336 IK V I+G + D M ++ + +VGD I+ Sbjct: 279 IKND-VSIVGASS-DHLMINLNNQDYYKVGDIIEF 311 >gi|167646643|ref|YP_001684306.1| alanine racemase domain-containing protein [Caulobacter sp. K31] gi|167349073|gb|ABZ71808.1| alanine racemase domain protein [Caulobacter sp. K31] Length = 383 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 6/69 (8%) Query: 9 LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L ID AL+ N M + + K IA AG + Sbjct: 25 LVIDRPALERNIARMARFAADKGVKLRPHAKT----HKSVDIAKLQVAAGAVGLCCAKIG 80 Query: 67 EGVKLRLYT 75 E L Sbjct: 81 EAEALAEGG 89 >gi|331694412|ref|YP_004330651.1| alanine racemase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949101|gb|AEA22798.1| alanine racemase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 374 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 10/142 (7%) Query: 11 IDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL L N + A R VK +IA AG V +V E Sbjct: 31 VDLDVLTRNLDRAAEHARAAGLRLRPHVKT----HKSPEIARRQVEAGAVGLTVATVSEA 86 Query: 69 VKLRLYTPQ----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 A G + + + + V P+ + L G Sbjct: 87 EIFCRAGATDLFVAYPVWAAGPRGARLRALAQRVDLRVGVDSPEAARHLGLALAGTGASV 146 Query: 125 ALQVDTGFNRLGLSLQEALDFT 146 +++D+G R G++ + A + Sbjct: 147 LVEIDSGMRRSGVAPERAPEVA 168 >gi|290959027|ref|YP_003490209.1| hypothetical protein SCAB_46061 [Streptomyces scabiei 87.22] gi|260648553|emb|CBG71664.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 343 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G EK+A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHEKLAEEATRLGSDILAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL +E + +I +SSV + V ++V + Sbjct: 65 IKDW-FSGDLLVLTPYRRAEEPVPLPDRVIRSVSSVDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S QE + +L HL S + L + Sbjct: 117 SMKRHGVSEQELPQL---HAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKSEDLIRLQQQFPQTRFRARIGTRLWLGDHEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + G+ Y QK + D + V A G + G P L G+ G Sbjct: 224 DVTRVAKGDRFGYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|256824351|ref|YP_003148311.1| amino acid aldolase or racemase [Kytococcus sedentarius DSM 20547] gi|256687744|gb|ACV05546.1| predicted amino acid aldolase or racemase [Kytococcus sedentarius DSM 20547] Length = 371 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 77/305 (25%), Gaps = 47/305 (15%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 +D L+ N + L+ +A+T C +IA AG Sbjct: 14 AVVDRDRLQANIDRVARLAADRGQALRPHAKT----------HKCPQIAALQLEAGASGL 63 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-----SSVPQLTFYSKL 115 V ++ E + V SV + + L Sbjct: 64 TVATLGEAEVFADAGCTDLLIAYPVWWDADRAGRVAQLAARVRLAVGVDSVEAVQHLASL 123 Query: 116 MSCGVSHP------------YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISH 163 + P ++VD G +R G + Q+A + Sbjct: 124 LGTAPGRPLAAPISPPTLPELVVEVDCGHHRSGCAPQDAGAVARAGLEAGFVVRGVFAFP 183 Query: 164 LACADDPSSHVNSVQLERFRTLISHYKG----IEASLASSS-GILLGPNYHFQLTRPGIS 218 + Q R + + +E ++ S + F RPG+ Sbjct: 184 GHSYTPTGREEVAEQEARDLAVAADSLRGAGILEPWVSGGSTPTVEHEGDGFDEVRPGVY 243 Query: 219 LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADG 278 + G D + + + AG + K + G+A G Sbjct: 244 VVG--DAQQWELGTCSSADVALTVHATVVSHAGGRLVLDAGSKA-----LGADRAGWATG 296 Query: 279 YPLTL 283 + L Sbjct: 297 FGRLL 301 >gi|21222310|ref|NP_628089.1| hypothetical protein SCO3903 [Streptomyces coelicolor A3(2)] gi|256786589|ref|ZP_05525020.1| hypothetical protein SlivT_19041 [Streptomyces lividans TK24] gi|289770481|ref|ZP_06529859.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|4808399|emb|CAB42731.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|289700680|gb|EFD68109.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 343 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 85/298 (28%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLAEEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + VL G+E + ++ +SS+ + V ++V + Sbjct: 65 IKD-FFGGDLLVLTPYRRGEEPVPLPDRVVRSVSSIDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMKRHGISEQDLPQL---HAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKADELARLQQQFPQTRFRARIGTRLWLGDHEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + GE Y QK + D + V A G + G P L G+ G Sbjct: 224 DVTRVAKGERFGYRQQKAAS-DGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|261884739|ref|ZP_06008778.1| alanine racemase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 96 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ++ + TA +N +++ G+ R +V+KD+AYG G +A +G++ Sbjct: 1 MSKIVLSKTAYIHNLTQISSQIGSKDRIISVLKDDAYGHGTGLMARISSGSGIKW 55 >gi|297193319|ref|ZP_06910717.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718363|gb|EDY62271.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 343 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 80/277 (28%), Gaps = 33/277 (11%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 V K N YG G E+++ G V + E +++ + + VL G+E Sbjct: 26 LVPVCKGNGYGFGHERLSEEASRFGADMLAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + ++ +SSV + V ++ + R G+S Q+ Sbjct: 85 PVPLPDRVVRSVSSV-------DGVHALVGARVVIECMSSMKRHGISEQDLGQL---HAA 134 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-------SGILL 204 + +L HL S + L + + S Sbjct: 135 IEDVRLEGFALHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLRAQEQARLQQQ 194 Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 P F+ G + ++ + + G+ Y QK + Sbjct: 195 FPQTRFRARIGTRLWLGDHESTE----------YRGAVLDVTRVSRGDRFGYRQQKAAS- 243 Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 D + V A G + G P L G+ G Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|284164081|ref|YP_003402360.1| diaminopimelate decarboxylase [Haloterrigena turkmenica DSM 5511] gi|284013736|gb|ADB59687.1| diaminopimelate decarboxylase [Haloterrigena turkmenica DSM 5511] Length = 466 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE---- 67 DL ++ N+ + + +A VK NA +++ L+ G S E Sbjct: 36 DLERVRENYRRLASAFPDAEIMYAVKANA----LDEVLETLHEEGA-GLECASAGEVKRA 90 Query: 68 --GVKL--RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI 103 ++ R A + P ++ Sbjct: 91 LAAIESSDRSDGSGADVHYTAVNPPARDLDWVVDAWEDHP 130 >gi|307329994|ref|ZP_07609146.1| alanine racemase domain protein [Streptomyces violaceusniger Tu 4113] gi|306884370|gb|EFN15404.1| alanine racemase domain protein [Streptomyces violaceusniger Tu 4113] Length = 343 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 82/287 (28%), Gaps = 36/287 (12%) Query: 22 SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81 + G V K N YG G E++A G V + E +++ + Sbjct: 19 VIQQFPG---IVPVCKGNGYGFGHERLAEEAARMGSDVLAVGTTYEAARMKD-FFSGDLL 74 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141 VL G+E + +I +SSV + V+ ++V + R G++ Q+ Sbjct: 75 VLTPFRRGEEPVPLPDRVIRSVSSVDGVYGL-------VNARVVIEVMSSMKRHGITEQD 127 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-- 199 + +L HL + L + + S Sbjct: 128 LPKL---HAAIENVRLEGFAIHLPLDRTDGLDAVEEVIAWMDRLRAARLPLHTMFVSHLK 184 Query: 200 -----SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254 P F+ G D ++ + + G+ Sbjct: 185 AEELARLQQQFPQTRFRARIGTRLWLGDHDSTE----------YRGSVLDVTRVAKGDRF 234 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 Y QK + D + V A G + G P L G+ G Sbjct: 235 GYRQQKSAS-DGHLVVVAGGTSHGVGLEAPKALHGMMPRAKGVARAG 280 >gi|254384799|ref|ZP_05000136.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343681|gb|EDX24647.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 343 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 83/298 (27%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++ G V + E Sbjct: 7 VDTARWRAHQKQIQDQFPG--LIPVCKGNGYGFGHERLCEEATRMGADILAVGTTYEAAS 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SSV + V ++ + Sbjct: 65 IKDW-FGGDLLVLTPFRRGEEPVPLPDRVIRSVSSVDGVRGL-------VGARVVIECMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMRRHGISEQDLGLL---HSAIEDVRLEGFALHLPLDRPDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKAQELTRLQQQFPQTRFRARIGTRLWLGDHEAT----------QYRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + G+ Y QK + D + V A G + G P L G+ G Sbjct: 224 DVTRVSKGDRFGYRQQKAAS-DGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|82751776|ref|YP_417517.1| hypothetical protein SAB2059c [Staphylococcus aureus RF122] gi|82657307|emb|CAI81748.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 356 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKKIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|21283833|ref|NP_646921.1| hypothetical protein MW2104 [Staphylococcus aureus subsp. aureus MW2] gi|49486967|ref|YP_044188.1| hypothetical protein SAS2079 [Staphylococcus aureus subsp. aureus MSSA476] gi|297210001|ref|ZP_06926397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911012|ref|ZP_07128462.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH70] gi|21205275|dbj|BAB95969.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49245410|emb|CAG43887.1| hypothetical protein SAS2079 [Staphylococcus aureus subsp. aureus MSSA476] gi|296885674|gb|EFH24611.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887992|gb|EFK83187.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH70] Length = 356 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|329730285|gb|EGG66675.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 356 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|253729849|ref|ZP_04864014.1| amino acid racemase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726296|gb|EES95025.1| amino acid racemase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 356 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDILDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|282917526|ref|ZP_06325278.1| hypothetical protein SATG_02098 [Staphylococcus aureus subsp. aureus D139] gi|283767276|ref|ZP_06340191.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus H19] gi|282318488|gb|EFB48846.1| hypothetical protein SATG_02098 [Staphylococcus aureus subsp. aureus D139] gi|283461155|gb|EFC08239.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus H19] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|224477166|ref|YP_002634772.1| hypothetical protein Sca_1681 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421773|emb|CAL28587.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 104/361 (28%), Gaps = 40/361 (11%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+IDL ++ N + V+K A G I AL G+ Sbjct: 2 MAYLEIDLAKIQYNTLMLKHKLEQRGLDITPVIKCIA---GDRTIVEALKQLGIHHVGDA 58 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 KL + + + ++ + ++ S H Sbjct: 59 RFSNMDKLDDE-DLSFMMIRTPNRRELKETVLKVSISIQTEIETIRRINEIAASLDKKHK 117 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLERF 182 L VD +R G+ + ++ + + K L+ + + C D + + + + +F Sbjct: 118 ILLMVDWKDSREGILTYDIPEYINEIMHMKYICLAGLAFNFMCFQDIAPTEEDILLINQF 177 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLT------RPGISLYGGTDKINKSHPMQTVV 236 + G + S P + R G SL+ G + +++ P+ + Sbjct: 178 IQSVEKKTGYPLKMISGGNSSALPLLDYCTFGRINDLRIGESLFRGVNTVDQQ-PIHYLF 236 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 + + + + L I D +P Sbjct: 237 QDAITLKAEIIEIKPRIDTVKDASYLQVILDIGQIDTAIKDIFP---------------- 280 Query: 297 GGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQI-FGPDIKLDDVALASGTTNY 355 I+G + D M D+ +S +VGD I G + T + Sbjct: 281 ----MYDNVR--IMGATS-DHLMVDLKNSDFHKVGDMITFKLGYQALAHSM--YQDTIPH 331 Query: 356 D 356 + Sbjct: 332 E 332 >gi|298695444|gb|ADI98666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|57652195|ref|YP_186980.1| hypothetical protein SACOL2168 [Staphylococcus aureus subsp. aureus COL] gi|87161431|ref|YP_494774.1| hypothetical protein SAUSA300_2137 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196087|ref|YP_500902.1| hypothetical protein SAOUHSC_02433 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222291|ref|YP_001333113.1| hypothetical protein NWMN_2079 [Staphylococcus aureus subsp. aureus str. Newman] gi|161510385|ref|YP_001576044.1| hypothetical protein USA300HOU_2170 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142602|ref|ZP_03567095.1| hypothetical protein SauraJ_13337 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450860|ref|ZP_05698917.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262050295|ref|ZP_06023142.1| hypothetical protein SAD30_1178 [Staphylococcus aureus D30] gi|262053059|ref|ZP_06025233.1| hypothetical protein SA930_1982 [Staphylococcus aureus 930918-3] gi|282926948|ref|ZP_06334574.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|284025208|ref|ZP_06379606.1| hypothetical protein Saura13_11502 [Staphylococcus aureus subsp. aureus 132] gi|294850640|ref|ZP_06791364.1| hypothetical protein SKAG_02737 [Staphylococcus aureus A9754] gi|304379362|ref|ZP_07362098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286381|gb|AAW38475.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|87127405|gb|ABD21919.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203645|gb|ABD31455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375091|dbj|BAF68351.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160369194|gb|ABX30165.1| hypothetical protein USA300HOU_2170 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861454|gb|EEV84258.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259159055|gb|EEW44125.1| hypothetical protein SA930_1982 [Staphylococcus aureus 930918-3] gi|259161619|gb|EEW46214.1| hypothetical protein SAD30_1178 [Staphylococcus aureus D30] gi|269941773|emb|CBI50181.1| hypothetical protein SATW20_23130 [Staphylococcus aureus subsp. aureus TW20] gi|282592128|gb|EFB97151.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294822511|gb|EFG38956.1| hypothetical protein SKAG_02737 [Staphylococcus aureus A9754] gi|302752053|gb|ADL66230.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342068|gb|EFM07971.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195970|gb|EFU26332.1| hypothetical protein CGSSa01_06929 [Staphylococcus aureus subsp. aureus CGS01] gi|320139439|gb|EFW31316.1| alanine racemase protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142482|gb|EFW34292.1| alanine racemase protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314861|gb|AEB89274.1| Alanine racemase [Staphylococcus aureus subsp. aureus T0131] gi|329731370|gb|EGG67735.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus subsp. aureus 21189] Length = 356 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|206901254|ref|YP_002251767.1| amino acid racemase [Dictyoglomus thermophilum H-6-12] gi|206740357|gb|ACI19415.1| amino acid racemase [Dictyoglomus thermophilum H-6-12] Length = 362 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 100/353 (28%), Gaps = 41/353 (11%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG----------LGCEKIAP 50 M + L+I+L A+ +N + V K YG LG KIA Sbjct: 1 MDNICSPYLEINLPAIYHNAKII-----------VEKGRDYGILIDGVTKVSLGDPKIAE 49 Query: 51 ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110 L AGV + +E +++ ++ Q + I + S + L Sbjct: 50 VLVEAGVFGISDSRIESIKRMKESNLNTNFTLIRLPCLSQVEEEIKYADISLNSELSTLR 109 Query: 111 FYSK-LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169 ++ H + V+ G R G+ +E L F K + Sbjct: 110 ALNEAGEKLKKKHRVVIMVEMGDIREGIWNREELYFVVREVLKMKNLELFGVGTNFTCFG 169 Query: 170 PSSHVNSVQLERFRT---LISHYKGIEASLASSSGILLGP-------NYHFQLTRPGISL 219 + F + I ++ S P R G + Sbjct: 170 GVIP-TEEKYMDFIEIVDDLKRKFNISFAIVSGGNSSTIPLLFKGKIPLGVNHLRIGEGI 228 Query: 220 YGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 G + + I I + V +G D+ + Sbjct: 229 MLGRETAYRKVIPGARTDTFRFIGEILEVKEKPSVPWGVIG---EDAFGHKPSFKARGVR 285 Query: 280 PLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGD 332 + + + + V +LG + D T+ DI++ ++VGD Sbjct: 286 KRAILNFGRQDIDPEGIKPEIL----GVEVLGATS-DYTVVDISERDDLKVGD 333 >gi|320009727|gb|ADW04577.1| alanine racemase domain protein [Streptomyces flavogriseus ATCC 33331] Length = 343 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 80/277 (28%), Gaps = 33/277 (11%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 V K N YG G E++A G V + E +++ + + VL G+E Sbjct: 26 LVPVCKGNGYGFGHERLADEAIRFGSDILAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + +I +SSV + V ++ + R G+ +E Sbjct: 85 PVPLPDRVIRSVSSV-------DGVHALVGARVVIECMSSMKRHGVKEEELGQL---HAA 134 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-------SGILL 204 + +L HL S + L + + S Sbjct: 135 IEDVRLEGFALHLPLDRTDGSDAVEEVIAWMDRLRAARLPLHTMFVSHLRAEELARLQQQ 194 Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 P F+ G + ++ + + + G+ Y QK + Sbjct: 195 FPQTRFRARIGTRLWLGDHEATE----------YRGAVLDVTRVVKGDRFGYRQQKAAS- 243 Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 D + V A G + G P L G+ G Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|269792447|ref|YP_003317351.1| alanine racemase domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100082|gb|ACZ19069.1| alanine racemase domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 364 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 8/158 (5%) Query: 13 LTALKNNWHSMNALSG--NARTAAVVKDNAYGL-GCEKIAPALYNAGVQDFFVTSVEEGV 69 L ++ N + +L+G V K GL G +A A+ + G + + V Sbjct: 11 LETVRFNASQVASLAGRVGVSIWGVTK----GLCGEPSLARAMVDGGCEAIGDSRVRNLA 66 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-KLMSCGVSHPYALQV 128 ++ A ++++ + + + ++SS+ L + L Sbjct: 67 HMKAAGVDAPMYLIRIPMLSEIPWMLEVADGCLVSSLETLEVIEGHCAAQRRVFQVVLMF 126 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 D G R G Q A D + ++ + ++L C Sbjct: 127 DLGDLREGFMPQMAEDVGRFCSSLSWVRVIGVGTNLGC 164 >gi|194335990|ref|YP_002017784.1| Orn/DAP/Arg decarboxylase 2 [Pelodictyon phaeoclathratiforme BU-1] gi|194308467|gb|ACF43167.1| Orn/DAP/Arg decarboxylase 2 [Pelodictyon phaeoclathratiforme BU-1] Length = 379 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D L+ N+ + VK N+ ++I Y+AG F V S+ E + Sbjct: 20 VDHEVLRANYREFKRHLPRVQAYFAVKANS----AKEIVKTFYDAGAS-FDVASMPEFLA 74 Query: 71 L 71 + Sbjct: 75 V 75 >gi|219853015|ref|YP_002467447.1| Orn/DAP/Arg decarboxylase 2 [Methanosphaerula palustris E1-9c] gi|219547274|gb|ACL17724.1| Orn/DAP/Arg decarboxylase 2 [Methanosphaerula palustris E1-9c] Length = 404 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ID ++ N+ + + VK N+ +I L++ G F V S+ E Sbjct: 46 IDHEKIRQNYREFREHLPDVQVYFAVKANSN----PEIVKTLFDMGCS-FDVASMPE 97 >gi|312144490|ref|YP_003995936.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905141|gb|ADQ15582.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus'] Length = 357 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 61/344 (17%), Positives = 108/344 (31%), Gaps = 23/344 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +F + I L ++ N M A+ N AVVK A G K+ A + Sbjct: 2 DFPVIDIYLNKIEENALQMKAMLNDNNINLTAVVKGFA---GDLKVFNCFQKAAINSIAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV-PQLTFYSKLMSCGVS 121 + ++ K R Q I +L + + +IS + + Sbjct: 59 SRLQNIKKYRAAGYQGEIMMLRIPMCSELEEAVKYIDTTLISEIETARAAAKAAVKLNKE 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLE 180 + VD G R G+ + + +L I ++L C A N+ +L Sbjct: 119 IKVIIMVDLGDRREGVLAENLKELAAEIIKLDGLKLDGIGTNLGCFAGVLPDEKNTKELI 178 Query: 181 RFRTLISHYKGIEAS---LASSSGILLGPN----YHFQLTRPGISLYGGTDKINKSHPMQ 233 +++ + I+ + +++ +L N R G + GTD IN+ Sbjct: 179 KYKKELEKEFSIKINRISAGNTATTILLNNNELSSSINNLRIGEGILLGTDIINERLFNN 238 Query: 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPS 293 I + A G + + G + Sbjct: 239 LNHYNFRLRAEIIELKAKPSNPEGEMAFGGKGRNQILKDQGL-----RQRAIAAVGKQDI 293 Query: 294 VFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336 + G KG +LG + D + D+TD I VGD + Sbjct: 294 DYHGLYPLDKGI--EVLGASS-DHLIMDVTDLKRKIAVGDILTF 334 >gi|163858331|ref|YP_001632629.1| hypothetical protein Bpet4013 [Bordetella petrii DSM 12804] gi|163262059|emb|CAP44361.1| conserved hypothetical protein [Bordetella petrii] Length = 379 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 13/173 (7%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID+ ++ N M VK C +A A AG + V++++ Sbjct: 16 AIIDVARMQANIDRMQQRMNTLGVALRPHVKT----SKCTPVAQAQLAAGARGITVSTLK 71 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL------IPVISSVPQLTFYSKLMSCGV 120 E + A I G+ P + I ++ + G Sbjct: 72 EAEQFFEAGI-ADILYAVGMVPQRLPAALALRRRGCDLKIITDNAAAARAIAAFGREHGE 130 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 +++DT +R G+ EA + + G + A + Sbjct: 131 VFEVWIEIDTDGHRSGIKPGEAALLEVGAALHEGGMTLGGVMTHAGSSYDLDT 183 >gi|217966665|ref|YP_002352171.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724] gi|217335764|gb|ACK41557.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724] Length = 361 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 51/337 (15%), Positives = 99/337 (29%), Gaps = 25/337 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+I+L A+ +N + V K + LG KIA L AGV + +E Sbjct: 8 LEINLPAIYHNAKVIVEKGKEQGILIDGVTKVS---LGDPKIARVLVKAGVFGISDSRIE 64 Query: 67 EGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +++ + E+ I ++ + H Sbjct: 65 SIKRMKEDGLDTQFTLIRLPCLSQVEEEIKYADVSLNSEFITLKALNEAGERLKKKHKVI 124 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + V+ G R G+ +E L F K I + F + Sbjct: 125 IMVEMGDIREGIWNKEELYFVIGEVLKMENLELWGIGTNFTCFGGVIP-TEEKYISFLEI 183 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + +E S ++ G N + + G + + Sbjct: 184 VRD---LEKRFNISFPMVSGGNS----SSISLLFEGKIPSGINHLRIGEGIMLGRETSYR 236 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGY--ADGYP-------LTLSGLDSEHSPSVFL 296 + L ++ ++ G D + + + + Sbjct: 237 KPVLGARTDTFKFVGEILEIKEKPSIPWGIIGEDAFGHKPSFKVRGIRKRALLNFGRQDI 296 Query: 297 GGKGFIKGYM-VPILGKITMDMTMFDITDSLSIEVGD 332 +G I + ILG + D T+ DI+++ S++VGD Sbjct: 297 DPEGLIPETFGIEILGATS-DYTVVDISENDSLKVGD 332 >gi|283471407|emb|CAQ50618.1| alanine racemase, N-domain family [Staphylococcus aureus subsp. aureus ST398] Length = 356 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 72/210 (34%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 ++ + + +L + + + + + + + + +++ G H Sbjct: 58 RLDNIISI--ADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHHINEVAEVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|29830835|ref|NP_825469.1| hypothetical protein SAV_4292 [Streptomyces avermitilis MA-4680] gi|29607948|dbj|BAC72004.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 343 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 86/298 (28%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++A G V + E + Sbjct: 7 VDTARWRAHHKHVQEQFPG--LVPVCKGNGYGFGHERLADEATRLGSDVLAVGTTYEAAR 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G+E + +I +SS+ + V ++V + Sbjct: 65 IKDW-FGGDLLVLTPFRRGEEPVPLPDRVIRSVSSIDGVYGL-------VGARVVIEVMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMKRHGVSEQDLPHL---HSAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G + ++ Sbjct: 174 PLHTMFVSHLKAEELARLQQQFPQTRFRARIGTRLWLGDHEATE----------YRGAVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + G+ Y QK + D + V A G + G P L G+ G Sbjct: 224 DVTRVSKGDRFGYRQQKAAS-DGYLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|49484398|ref|YP_041622.1| hypothetical protein SAR2269 [Staphylococcus aureus subsp. aureus MRSA252] gi|257423669|ref|ZP_05600098.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426346|ref|ZP_05602748.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257428988|ref|ZP_05605375.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257431634|ref|ZP_05607997.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257434593|ref|ZP_05610644.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus M876] gi|282902084|ref|ZP_06309977.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus C160] gi|282906526|ref|ZP_06314374.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909492|ref|ZP_06317305.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282915031|ref|ZP_06322808.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus M899] gi|282920758|ref|ZP_06328476.1| hypothetical protein SASG_00939 [Staphylococcus aureus subsp. aureus C427] gi|282925663|ref|ZP_06333311.1| hypothetical protein SARG_00990 [Staphylococcus aureus subsp. aureus C101] gi|283958956|ref|ZP_06376399.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus A017934/97] gi|293497440|ref|ZP_06665294.1| hypothetical protein SCAG_00013 [Staphylococcus aureus subsp. aureus 58-424] gi|293511011|ref|ZP_06669708.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus M809] gi|293549617|ref|ZP_06672289.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus M1015] gi|295428766|ref|ZP_06821390.1| hypothetical protein SIAG_02004 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589749|ref|ZP_06948390.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|49242527|emb|CAG41247.1| hypothetical protein SAR2269 [Staphylococcus aureus subsp. aureus MRSA252] gi|257272687|gb|EEV04789.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275977|gb|EEV07428.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279469|gb|EEV10056.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282513|gb|EEV12645.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285189|gb|EEV15305.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus M876] gi|282312492|gb|EFB42896.1| hypothetical protein SARG_00990 [Staphylococcus aureus subsp. aureus C101] gi|282315173|gb|EFB45557.1| hypothetical protein SASG_00939 [Staphylococcus aureus subsp. aureus C427] gi|282320752|gb|EFB51086.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus M899] gi|282326602|gb|EFB56902.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329425|gb|EFB58946.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596543|gb|EFC01502.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus C160] gi|283789515|gb|EFC28340.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus A017934/97] gi|290918664|gb|EFD95740.1| putative amino acid racemase [Staphylococcus aureus subsp. aureus M1015] gi|291096371|gb|EFE26629.1| hypothetical protein SCAG_00013 [Staphylococcus aureus subsp. aureus 58-424] gi|291465998|gb|EFF08527.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus M809] gi|295127115|gb|EFG56757.1| hypothetical protein SIAG_02004 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578260|gb|EFH96973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|315193109|gb|EFU23509.1| hypothetical protein CGSSa00_09322 [Staphylococcus aureus subsp. aureus CGS00] Length = 356 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 72/210 (34%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 ++ + + +L + + + + + + + + +++ G H Sbjct: 58 RLDNIISM--ADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHHINEVAEVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|300718462|ref|YP_003743265.1| alanine racemase [Erwinia billingiae Eb661] gi|299064298|emb|CAX61418.1| Alanine racemase [Erwinia billingiae Eb661] Length = 386 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 21/206 (10%) Query: 9 LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++ID L N M + GN R VK IA G V+ Sbjct: 27 IEIDAQRLTRNLQQMQQRAATGNVRLRPHVKT----HKSVAIAQQQIALGAVGITVSKPS 82 Query: 67 EGVKLRLYTPQARIFVLYGIHPG--------QEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 EGV + + + +I + + Sbjct: 83 EGVVFINGGVRDVLLAYPVVQAESVSALFAVAASSGCKLGVIVASQAGVAAIAQAAAAVT 142 Query: 119 GVSHPYALQVDTGFNRLGLSLQ--EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + ++VD G R+G++ + EAL H L ++ A N Sbjct: 143 SLDLSVWIKVDVGLGRVGVNPEGDEALQLAHAVQAAGL----HFAGLVSHAGHAYGAQNP 198 Query: 177 VQLERFRTLISHYK-GIEASLASSSG 201 Q+ + G+ L + Sbjct: 199 QQMAAIVQAEAQCMQGLRQRLHQAGF 224 >gi|118444569|ref|YP_878187.1| amino acid racemase [Clostridium novyi NT] gi|118135025|gb|ABK62069.1| amino acid racemase [Clostridium novyi NT] Length = 368 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 5 EFLRLKIDLTALKNN----WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + RL+I+++ LK+N ++ + V K G + A A+ + G++ Sbjct: 2 SYPRLEINISKLKHNAKVEVETLKKI--GVEVMGVNKVF---NGSVETAKAIVDGGIKVV 56 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG 119 + ++ K++ + +L + + I + S + + SK Sbjct: 57 AESRIDNLKKIQNL--KCEKALLRSPALSEIGDVVKYADISLNSEIEIIRELSKEAVIQN 114 Query: 120 VSHPYALQVDTGFNRLGLSLQ 140 H L +D G R G+ + Sbjct: 115 KIHKVLLMIDFGDIREGIWFE 135 >gi|254513241|ref|ZP_05125306.1| threonine aldolase family protein [Rhodobacteraceae bacterium KLH11] gi|221532245|gb|EEE35241.1| threonine aldolase family protein [Rhodobacteraceae bacterium KLH11] Length = 382 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 40/166 (24%), Gaps = 6/166 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL K N + + +K IA A F V S+ Sbjct: 32 LLVDLPVFKQNIERAAQMVADTGKAFTPHLKA----HKTPDIAEMQCAASAAGFCVASIG 87 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E Y + Q I + +V T + + ++ Sbjct: 88 EAEVFAKYGDTPLTITSATVTGRQMARIAALSKQVSELTVVVDTPPNIRALANLDATVSV 147 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS 172 +D R + E H + + A S Sbjct: 148 LIDIDMGRGRSACTEEAQAVHLAREIMGAPNLNLAGLQCYAGQLSH 193 >gi|227432611|ref|ZP_03914589.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351647|gb|EEJ41895.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 50 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 19/41 (46%) Query: 4 NEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLG 44 + +++ +A+ +N + + AV+K NA+ G Sbjct: 7 HRHAVIELSQSAVVHNLKVIKENTHAKEIMAVLKANAFSHG 47 >gi|326317869|ref|YP_004235541.1| alanine racemase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374705|gb|ADX46974.1| alanine racemase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 377 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 49/179 (27%), Gaps = 29/179 (16%) Query: 11 IDLTALKNNWHSMNA-----------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ID ++ N M + + VV A AG Q Sbjct: 14 IDTQRMERNIRRMQDRMQAMGVRFRPHAKTTKCLPVV-------------QAQIAAGAQG 60 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSK 114 V++++E + Q ++ + + + I S Sbjct: 61 ITVSTLKEAEQFFEAGIQDILYAVGMVPGKLGQALALRQRGCQLKIITDSVAAAREIGRF 120 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + G +++DT +R G+ +E + + G + + A + Sbjct: 121 GAAHGAVFEVWIEIDTDGHRSGIKPEEDALLQVANVLRDAGMVVGGVLAHAGSSYDHDD 179 >gi|311032754|ref|ZP_07710844.1| alanine racemase domain protein [Bacillus sp. m3-13] Length = 390 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 12/143 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +D L N M+ + + +K +IA G Sbjct: 11 PTLILDGQILLKNIRKMSDFAKENKVNLRPHIKT----HKSVEIAKLQLEHGAIGITTAK 66 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD------TNLIPVISSVPQLTFYSKLMSC 118 +EE + + + P + + I I V S L Sbjct: 67 LEEAEVMAASGIKDILVAYPVSSPAKIERIIALLDQEVDLKITVDSLEQVKLLQKALEKT 126 Query: 119 GVSHPYALQVDTGFNRLGLSLQE 141 S ++V++G NR G+ E Sbjct: 127 SHSLEVWIKVNSGLNRCGVEPGE 149 >gi|282911745|ref|ZP_06319541.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282323441|gb|EFB53757.1| alanine racemase domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|312437404|gb|ADQ76475.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH60] Length = 356 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ + + G H Sbjct: 58 RLDNIISMADQYLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHHINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|300814860|ref|ZP_07095094.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511056|gb|EFK38322.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 370 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 7/136 (5%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +L L++N ++ N V+K G +IA Y+ V + +E+ Sbjct: 21 NLNKLRDNLAALTKRCQIYNVSIVGVIKGF---NGIAEIAKV-YDGKVDFIASSRLEQLN 76 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128 ++ Q + + P + + I + S + ++ G+ H L Sbjct: 77 VIKELNLQTPLMCIRISMPSEVDELVRICQISLQSDPSVIKLINEAAKKQGLIHKIVLMA 136 Query: 129 DTGFNRLGLSLQEALD 144 D G R G ++ L Sbjct: 137 DIGDLREGFWNKDHLF 152 >gi|258424783|ref|ZP_05687658.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257845016|gb|EEV69055.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 356 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I ++ G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESIKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|299533035|ref|ZP_07046422.1| alanine racemase-like protein [Comamonas testosteroni S44] gi|298719259|gb|EFI60229.1| alanine racemase-like protein [Comamonas testosteroni S44] Length = 394 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 18/77 (23%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L IDL A+ N M + +A+ IA L +AG Sbjct: 24 LVIDLDAMDRNIERMARFAQQHGVLWRPHAKL----------HKSAHIAHLLEHAGACGH 73 Query: 61 FVTSVEEGVKLRLYTPQ 77 V V E L Sbjct: 74 CVQKVSEAEALAQGGIT 90 >gi|149180769|ref|ZP_01859272.1| Serine racemase [Bacillus sp. SG-1] gi|148851559|gb|EDL65706.1| Serine racemase [Bacillus sp. SG-1] Length = 365 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 12/141 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +D L N + + + + + +K +IA AG + Sbjct: 10 PTLLLDYQKLMKNINEIASFAKEHSLSYRPHIKT----HKSVEIAKLQLQAGAIGITTAT 65 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD------TNLIPVISSVPQLTFYSKLMSC 118 + E + + P + K + I V + V ++L Sbjct: 66 IPEAEAMAAGGINDILIAYPIASPQKIKRLIALLEQDVKLKISVDNPVQLTHLQNELEHT 125 Query: 119 GVSHPYALQVDTGFNRLGLSL 139 + ++V++G NR G+ Sbjct: 126 PFTLEVWIKVNSGLNRCGVEP 146 >gi|262066081|ref|ZP_06025693.1| amino acid racemase [Fusobacterium periodonticum ATCC 33693] gi|291380175|gb|EFE87693.1| amino acid racemase [Fusobacterium periodonticum ATCC 33693] Length = 355 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 56/351 (15%), Positives = 103/351 (29%), Gaps = 38/351 (10%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART-AAVV-K---DNAYGLGCEKIAPALYNAG--VQ 58 + RL+I++ LK N ++ L A+V K N I L V Sbjct: 2 YPRLEININKLKTNLQVISNLLKKNNLSLAMVTKAYCAN------VNIVTELVKDNNLVD 55 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-S 117 + +E K++ +L + + + I S L +++ Sbjct: 56 YLADSRIENLKKMKD--INIPKILLRIPMKSEVEEVVKYADISFNSEYETLEKLNEVAKK 113 Query: 118 CGVSHPYALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVN 175 H + VD G R G ++ + L+ + + + ++L C S N Sbjct: 114 NNKIHKVVIMVDLGDLREGYFVEKDLLENIKKIHDLHNISIIGLATNLTCYGSVLPSEEN 173 Query: 176 SVQLERFRTLISHYKGIEASLASSS--------GILLGPNYHFQLTRPGISLYGGTDKIN 227 +L I I+ + S P+ L L G Sbjct: 174 LSKLVNLAEKIEKNFHIKMQIISGGNSSSLFLLNENRLPSKINNLRVGEAILLGRETAYG 233 Query: 228 KSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYAD-GYPLTLSGL 286 + + ++ E S R + Y D G + + Sbjct: 234 EDIDGTY---NDVFKLVCEVIENKEKPSVPI---GERGLDAFGNQVEYEDKGI---MQRV 284 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQI 336 G F + ++G + D T+ D+T +VGD I+ Sbjct: 285 IIGIGRQDISIGHFFPIDKKIEVVGASS-DHTILDVTHCVKKYQVGDLIEF 334 >gi|264680409|ref|YP_003280319.1| alanine racemase [Comamonas testosteroni CNB-2] gi|262210925|gb|ACY35023.1| alanine racemase-like protein [Comamonas testosteroni CNB-2] Length = 394 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 18/77 (23%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L IDL A+ N M + +A+ IA L +AG Sbjct: 24 LVIDLDAMDRNIERMARFAQQHGVLWRPHAKL----------HKSAHIAHLLEHAGACGH 73 Query: 61 FVTSVEEGVKLRLYTPQ 77 V V E L Sbjct: 74 CVQKVSEAEALAQGGIT 90 >gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117] gi|307746073|emb|CBT77045.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117] Length = 366 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 44/337 (13%), Positives = 99/337 (29%), Gaps = 40/337 (11%) Query: 7 LRLKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 ++ +D+ L+ N + L +A+T ++IA NAG Sbjct: 11 PQILVDVAKLEKNIDRVAHRVASQGLKLRPHAKT----------HKMQEIAERQMNAGAA 60 Query: 59 DFFVTSVEEGVKLRLYT-----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS 113 V +V E + L+ ++V +++ L SV + + Sbjct: 61 GLTVATVGEALSFALHGVAKIFIAYPLWVDQAQATRILELMRRAKLSIGTDSVEAVEQMA 120 Query: 114 KLMSCGV-SHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPS 171 K++ V +++D+G +R G+S Q A++ + + A + Sbjct: 121 KMLGEKVSKVKLIIEIDSGHHRSGVSPQGAVEIAEAARAVGMRVHGVFTFPGHSYAPEGI 180 Query: 172 SHVNSVQLERFRTLI-----SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226 + + + + + S S+ L N RPG+ ++G + Sbjct: 181 DAALNDEHKALAEAACLLRDAGHTIKRISGGSTPTAELSDNAVLTEVRPGVYVFGDAQQF 240 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ +I + + L +A GY Sbjct: 241 ELGRVRWEDISLTVASTVISRHEGDGQIPRRIVLDAGSKVLGGDRPA-WATGYGRIAECP 299 Query: 287 DSEHSPSVFLGGKGFI--------KGYMVPILGK-IT 314 ++ S G + ++ + Sbjct: 300 EARISALSEHHATVLWPEHLPLPAHGQQLQVIPNHVC 336 >gi|221064978|ref|ZP_03541083.1| alanine racemase domain protein [Comamonas testosteroni KF-1] gi|220710001|gb|EED65369.1| alanine racemase domain protein [Comamonas testosteroni KF-1] Length = 394 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 18/77 (23%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L IDL A+ N M + +A+ IA L +AG Sbjct: 24 LVIDLDAMDRNIERMARFAQQHGVLWRPHAKL----------HKSAHIAHLLEHAGACGH 73 Query: 61 FVTSVEEGVKLRLYTPQ 77 V V E L Sbjct: 74 CVQKVSEAEALAQGGIT 90 >gi|282881806|ref|ZP_06290462.1| alanine racemase domain-containing protein [Peptoniphilus lacrimalis 315-B] gi|281298342|gb|EFA90782.1| alanine racemase domain-containing protein [Peptoniphilus lacrimalis 315-B] Length = 370 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 7/136 (5%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +L L++N ++ N V+K G +IA Y+ V + +E+ Sbjct: 21 NLNKLRDNLAALTERCQIYNVSIVGVIKGF---NGIAEIAKV-YDGKVDYIASSRLEQLN 76 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQV 128 ++ Q + + P + + I + S + ++ G+ H L Sbjct: 77 VIKELNLQTPLMCIRISMPSEVDELVRICQISLQSDPSVIKLINEAAKKQGIIHKIILMA 136 Query: 129 DTGFNRLGLSLQEALD 144 D G R G ++ + Sbjct: 137 DIGDLREGFWNKDHIF 152 >gi|284041650|ref|YP_003391990.1| alanine racemase domain protein [Conexibacter woesei DSM 14684] gi|283945871|gb|ADB48615.1| alanine racemase domain protein [Conexibacter woesei DSM 14684] Length = 372 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +D L+ N +M AL+ +A A K ++A +AG V + Sbjct: 11 LVVDRDVLRANVEAMAALARDAGVALRPHAKT----HKLPQVARMQLDAGAAGLTVAKLG 66 Query: 67 EGVKLRLYTPQ 77 E Sbjct: 67 EAEVFADAGVT 77 >gi|170078522|ref|YP_001735160.1| hypothetical protein SYNPCC7002_A1917 [Synechococcus sp. PCC 7002] gi|169886191|gb|ACA99904.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC 7002] Length = 222 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 21/223 (9%) Query: 14 TALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG---- 68 A+ N + + R AV K KI Y AG++DF +E Sbjct: 3 DAIAENIARLREEIPPEVRLIAVSKT----HSAAKI-RLAYAAGIRDFGENRFQEAQQKQ 57 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 +L P R + + + K L + + +P + Sbjct: 58 AELEDL-PDIRWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLENPARCCL 116 Query: 129 DTG----FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS-VQLERFR 183 N+ G + + L + +L +++ L + + Q+ + Sbjct: 117 QIKPLPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLSRTETRTAFKQIFSLK 176 Query: 184 TLISHYKGIEASLASSSGILLGP-----NYHFQLTRPGISLYG 221 ++ + L S + G + R G ++G Sbjct: 177 EQLNQMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFG 219 >gi|326424273|ref|NP_762625.2| putative amino acid racemase [Vibrio vulnificus CMCP6] gi|319999659|gb|AAO07615.2| Predicted amino acid racemase [Vibrio vulnificus CMCP6] Length = 360 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 6/165 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +L +D + +N + N V K G IA L +AG Sbjct: 2 RYPKLDLDCFKIHHNTQYLIERLALKNVSVTPVTKS-CLGH--PIIAQLLIDAGASTLAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVS 121 + +E ++ ++ Q + + I + + + + S++ Sbjct: 59 SRIENIQRMVHSGITVPKMLIRTPMLSQTAKVVEYCDISLNTEIQVIQQLSRVAKQVNSK 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 H + V+ G R G+ + F + + I ++L C Sbjct: 119 HGVIIMVELGDLREGVMPSRLIGFISEIISLPNIIIKGIGANLTC 163 >gi|309779212|ref|ZP_07673975.1| alanine racemase, N- domain protein [Ralstonia sp. 5_7_47FAA] gi|308922016|gb|EFP67650.1| alanine racemase, N- domain protein [Ralstonia sp. 5_7_47FAA] Length = 382 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 11/170 (6%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL +++N M + + VK C + A AG Q V++++E Sbjct: 18 IDLPRMQHNIARMQHRMNALGVKFRPHVKT----TKCLDVVRAQVAAGAQGITVSTLKEA 73 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-----ISSVPQLTFYSKLMSCGVSHP 123 + ++ + + + + ++ + G Sbjct: 74 EAFFAAGIKDILYAVGIVATKLPRAMALRKRGCDLKLVVDNAEAAHAVVDYARAHGERCE 133 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 ++VDT +R G++ ++ K G + A + + Sbjct: 134 VWIEVDTDGHRSGITPEQDALLEVGRILKNGGIDVSGVMTHAGSSYDLND 183 >gi|154249371|ref|YP_001410196.1| Orn/DAP/Arg decarboxylase 2 [Fervidobacterium nodosum Rt17-B1] gi|154153307|gb|ABS60539.1| Orn/DAP/Arg decarboxylase 2 [Fervidobacterium nodosum Rt17-B1] Length = 393 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 87/291 (29%), Gaps = 18/291 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL + NN+ + N + VK N+ +I L + G F V S E Sbjct: 16 LVMDLNVIANNYRQLIENINNCKVYYAVKSNS--H--IEIVKFLKDMG-SHFDVASRGEI 70 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KL + E I F + + +V K+ + +++ Sbjct: 71 EKLLSIGVEPSRMSFGNTIKKIEDIKFAYEVGIRMFAVDAEMEIEKIALVAPNADIYVRI 130 Query: 129 DTG----------FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 T + G S+ A++ + K L + L + +P + +++ Sbjct: 131 STNGMEGDADWPLTRKFGTSVNHAIELVRYAKEKGLNPIGLSFHVGSQNYNPENWRTAIR 190 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + G+E + ++ G + + P I + +T Sbjct: 191 EASIVFEEAKQFGVEMKMINTGGGMP---VRYVRDIPSIKKIAKVINEAVEEYLGNDITV 247 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 AG ++S + D G G T+ + Sbjct: 248 IVEPGRSMVGNAGVMISRVILRSKKGDENWLYLDAGVFHGLTETIQNIRYR 298 >gi|317494188|ref|ZP_07952604.1| alanine racemase domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917961|gb|EFV39304.1| alanine racemase domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 367 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+IDL L N + + AV K GC + A A+ + G+ + Sbjct: 3 MPTLEIDLKKLTENARVEKEMLAAHGIEVMAVNKVFD---GCIETAQAVLDGGINVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + + ++ + + + V Q G H Sbjct: 60 RTYNLKKIRATGCTTCLLRSPCLSEIEDVVRYADISLNSEPVVMQALSDEAQR-QGKIHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L +D G R G+ Sbjct: 119 VLLMIDMGDLREGIWFAHYEQIL 141 >gi|302535596|ref|ZP_07287938.1| conserved hypothetical protein [Streptomyces sp. C] gi|302444491|gb|EFL16307.1| conserved hypothetical protein [Streptomyces sp. C] Length = 343 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 83/298 (27%), Gaps = 35/298 (11%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D + + + V K N YG G E++ G V + E Sbjct: 7 VDTARWRAHQKQITDQFPG--LIPVCKGNGYGFGHERLCEEATRMGADILAVGTTYEAAS 64 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 ++ + + VL G++ + +I ++SV + V ++ + Sbjct: 65 IKDH-FGGDLLVLTPFRRGEDPVPLPDRVIRSVASVDGVRGL-------VGARVVIECMS 116 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK 190 R G+S Q+ + +L HL S + L + Sbjct: 117 SMRRHGISEQDLGLL---QSAIEDVRLEGFALHLPLDRPDGSDAVEEVIGWMDRLRAARL 173 Query: 191 GIEASLASS-------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + S P F+ G D ++ Sbjct: 174 PLHTMFVSHLRAEELARLQQQFPQTRFRARIGTRLWLGDHDAT----------QYRGSVL 223 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 + + G+ Y QK + D + V A G + G P L G+ G Sbjct: 224 DVTRVAKGDRFGYRQQKAAS-DGWLVVVAGGTSHGVGLEAPKALHGMMPRAKGVARAG 280 >gi|255530336|ref|YP_003090708.1| alanine racemase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343320|gb|ACU02646.1| alanine racemase domain protein [Pedobacter heparinus DSM 2366] Length = 375 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%) Query: 9 LKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L + L +K N +++ ++ AR VK ++++ L +AGV F ++ E Sbjct: 24 LVVYLDRVKTNIQHAIDIIADPARLRPHVKT----HKTKEVSRLLMDAGVNKFKCATIAE 79 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-------CGV 120 L + + + P ++I P + + + Sbjct: 80 AEMLGMLAAKDVLLAYQPFGPKLARLISLIRKYPDTRFSCLIDNLETAKNISALASSEQL 139 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 P + ++ G NR G+ Sbjct: 140 ELPVYIDLNVGMNRTGIQPDHCAIQLFEDA 169 >gi|222109718|ref|YP_002551982.1| alanine racemase domain-containing protein [Acidovorax ebreus TPSY] gi|221729162|gb|ACM31982.1| alanine racemase domain protein [Acidovorax ebreus TPSY] Length = 393 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 18/75 (24%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +DL A++ N M + +A+ +IA L AG + Sbjct: 28 LVVDLDAMERNIQRMAEFAHKHQVRWRPHAKM----------HKSAEIALQLEKAGARGH 77 Query: 61 FVTSVEEGVKLRLYT 75 V V E L Sbjct: 78 CVQKVSEAEALAAGG 92 >gi|161502497|ref|YP_001569609.1| hypothetical protein SARI_00541 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863844|gb|ABX20467.1| hypothetical protein SARI_00541 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 367 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 8/144 (5%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIEVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-CGVSH 122 K+R + + + + + I + S L S G +H Sbjct: 60 RTYNLKKIRETGCTTCLLRSPCL--SEIEDVVRYADISLNSEPVVLRALSHEAQRQGKTH 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 118 QVLLMVDMGDLREGIWFSEYQRIL 141 >gi|182437470|ref|YP_001825189.1| hypothetical protein SGR_3677 [Streptomyces griseus subsp. griseus NBRC 13350] gi|239942694|ref|ZP_04694631.1| hypothetical protein SrosN15_17004 [Streptomyces roseosporus NRRL 15998] gi|239989153|ref|ZP_04709817.1| hypothetical protein SrosN1_17757 [Streptomyces roseosporus NRRL 11379] gi|291446158|ref|ZP_06585548.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|326778125|ref|ZP_08237390.1| alanine racemase domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465986|dbj|BAG20506.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|291349105|gb|EFE76009.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|326658458|gb|EGE43304.1| alanine racemase domain protein [Streptomyces cf. griseus XylebKG-1] Length = 343 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 79/277 (28%), Gaps = 33/277 (11%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 V K N YG G E++A G V + E +++ + + VL G+E Sbjct: 26 LVPVCKGNGYGFGHERLADETIRFGSDTLAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + +I +SSV + V ++ + R G+ +E Sbjct: 85 PVPLPDRVIRSVSSV-------DGVHALVGARVVIECMSSMKRHGVKEEELGQL---HAA 134 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-------SGILL 204 + +L HL S + L + + S Sbjct: 135 IEDVRLEGFALHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLRAEELARLQQQ 194 Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 P F+ G + ++ + + G+ Y QK + Sbjct: 195 FPQTRFRARIGTRLWLGDHEATE----------YRGAVLDVTPVVKGDRFGYRQQKAAS- 243 Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 D + V A G + G P L G+ G Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|168704306|ref|ZP_02736583.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Gemmata obscuriglobus UQM 2246] Length = 373 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 16 LKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74 +K N + + ++G AR VK +I L AGV ++ E L Sbjct: 25 IKQNINRVVEMAGGPARLRPHVKT----HKTVEIVKLLLEAGVTKHKCATIAEAEMLAHA 80 Query: 75 T 75 Sbjct: 81 G 81 >gi|239815227|ref|YP_002944137.1| alanine racemase domain protein [Variovorax paradoxus S110] gi|239801804|gb|ACS18871.1| alanine racemase domain protein [Variovorax paradoxus S110] Length = 381 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 6/87 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL AL N M A + VK +IA AG ++ E Sbjct: 29 DLGALTRNIERMAAFAKARGVGLRPHVKT----HKSVEIARRQVAAGAIGVSCVTLGEAE 84 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFD 96 + + + P + + Sbjct: 85 VMVKAGIPDVLITSPAVTPSKIARVVK 111 >gi|323438672|gb|EGA96415.1| hypothetical protein SAO11_2500 [Staphylococcus aureus O11] gi|323441747|gb|EGA99390.1| hypothetical protein SAO46_2302 [Staphylococcus aureus O46] Length = 356 Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 9/210 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 + I+++ +K N + + S N + V+K A G I +L G+ + Sbjct: 1 MAHVNINISKIKYNAKVLQTVFQSKNMQFTPVIKCIA---GDRTIVESLKALGINHVAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 ++ + + D ++ +S++ Q+ + G H Sbjct: 58 RLDNITSIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVA--EVLGKKH 115 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQLER 181 L VD R G+ + LD+ + K + + C D S + + R Sbjct: 116 KILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINR 175 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQ 211 F + + G + S + P + Sbjct: 176 FVSAVEREIGYRLKIISGGNSSMLPQLLYN 205 >gi|297158767|gb|ADI08479.1| hypothetical protein SBI_05359 [Streptomyces bingchenggensis BCW-1] Length = 343 Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 77/265 (29%), Gaps = 32/265 (12%) Query: 22 SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81 + G V K N YG G E++A G V + E +++ Y + Sbjct: 19 VIQQFPG---IVPVCKGNGYGFGHERLAEEASRIGSDILAVGTTYEAARMKDY-FSGDLL 74 Query: 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141 VL G+E + +I +SSV + V+ ++V + R G++ + Sbjct: 75 VLTPFRRGEEPVPLPDRVIRSVSSVDGVYGL-------VNARVVIEVMSSMKRHGIAEAD 127 Query: 142 ALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-- 199 + +L HL + L + + S Sbjct: 128 LPKL---HAAIENVRLEGFAIHLPLDRTDGLDAVEEVIAWMDRLRAARLPLHTMFVSHLK 184 Query: 200 -----SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELV 254 P F+ G D ++ + + G+ Sbjct: 185 SEELARLQQQFPQTRFRARIGTRLWLGDHDST----------QYRGAVLDVTRVAKGDRF 234 Query: 255 SYGGQKKLTRDSLIAVAAIGYADGY 279 Y QK + D + V A G + G Sbjct: 235 GYRQQKTAS-DGYLVVVAGGTSHGV 258 >gi|316934654|ref|YP_004109636.1| alanine racemase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602368|gb|ADU44903.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1] Length = 360 Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 12/171 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L ID+ +++N + AL A A +K +A +AG + + Sbjct: 18 LVIDMDRVEHNIARIQALCDAAGVANRPHIKT----HKSPLLAKMQIDAGARGITCQKLG 73 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEK-----IIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 E + + I + + ++V + G Sbjct: 74 EAEVMADAGIDDILISYNLIGEEKMARLGALHERAAMTVAADNAVVIAGLPAAAARAGRP 133 Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 ++ DTG R G+ + EA+ + + + D P Sbjct: 134 LGVVVECDTGRQRAGVETPAEAVALARMIAASEGLSFKGFMLYPTEDDWPR 184 >gi|299065741|emb|CBJ36917.1| conserved protein of unknown function, Alanine racemase domain protein [Ralstonia solanacearum CMR15] Length = 376 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 13/174 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M + R VK CE + A AG Q V++++E Sbjct: 13 IDVARMTRNIERMQQRLDALGVRFRPHVKT----TKCEPVVRAQLAAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSH 122 + + ++ + G+ P + S + G + Sbjct: 69 EQFFAAGIRDIVYAV-GMAPAKLPQALALRRRGCDLKIVADSVTCAQAIAAFGGEHGEAF 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R G++ + + G + A + ++ Sbjct: 128 DVWIEVDVDGHRSGIAPDDDRLIAVGRVLAEGGMRLGGVLAHAGSSYEYHAHDA 181 >gi|150019968|ref|YP_001305322.1| alanine racemase domain-containing protein [Thermosipho melanesiensis BI429] gi|149792489|gb|ABR29937.1| alanine racemase domain protein [Thermosipho melanesiensis BI429] Length = 353 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 44/155 (28%), Gaps = 10/155 (6%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDFF 61 F +L I+L + N + GN AV K N KIA L G+ Sbjct: 2 NFPKLIINLEHIAKNAEILLKKLGNIELVAVTKLVLGN------PKIAKILKEVGIPKIG 55 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGV 120 + + K+ + +L + +IS Sbjct: 56 ESRLLNIKKMISHNIPGPFQLLRIPMISELNEAVPIVDEILISDEFTALKIDEIAQKYDK 115 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155 + VD G R G+ ++A N K Sbjct: 116 NIELIYMVDVGDLREGVWFEKARKTIENVAKKLKM 150 >gi|254391453|ref|ZP_05006655.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294813716|ref|ZP_06772359.1| Alanine racemase domain protein [Streptomyces clavuligerus ATCC 27064] gi|326442138|ref|ZP_08216872.1| hypothetical protein SclaA2_13789 [Streptomyces clavuligerus ATCC 27064] gi|197705142|gb|EDY50954.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294326315|gb|EFG07958.1| Alanine racemase domain protein [Streptomyces clavuligerus ATCC 27064] Length = 343 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 79/277 (28%), Gaps = 33/277 (11%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 V K N YG G E+++ + G V + E +++ + + VL G+E Sbjct: 26 LVPVCKGNGYGFGHERLSEEVNRFGTDMLAVGTTYEAARIKDW-FGGDLLVLTPFRRGEE 84 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + ++ +SSV + V ++ + R G+ E T Sbjct: 85 PVPLPDRVVRSVSSV-------DGVHALVGARVVIECMSSMKRHGVLEHELPQLT---AA 134 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-------SGILL 204 +L HL S + L + + S Sbjct: 135 IDNVRLEGFALHLPLDRTDGSDAVEEVIAWMDRLRAARLPLHTMFVSHLRADELARLQQQ 194 Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 P F+ G D ++ + + G+ Y QK + Sbjct: 195 FPQTRFRARIGTRLWLGDHDST----------QYRGAVLDVTRVAKGDRFGYRQQKAAS- 243 Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 D + V A G + G P L G+ G Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|239624944|ref|ZP_04667975.1| D-threonine aldolase [Clostridiales bacterium 1_7_47_FAA] gi|239521330|gb|EEQ61196.1| D-threonine aldolase [Clostridiales bacterium 1_7_47FAA] Length = 374 Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 32/302 (10%) Query: 13 LTALKNNWHSMNALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 L +K N L+G VK ++ AG+ F ++ E ++ Sbjct: 22 LDIIKENIKKAVDLAGGPGYLWPHVKT----HKMAQMVRLQMEAGITRFKCATIAEA-EM 76 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSK--------LMSCGVSHP 123 + V Y + + G+ Sbjct: 77 AAGCGAGHVLVAYPLVGPNISRFIQLMQAYPKVCFWTVGDNEDQIRALGQLCSEAGLRAN 136 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + V+ G +R G+ +++ F + + + L C D + + Q ++ Sbjct: 137 VLVDVNLGMDRTGVPVKDTEAFFMDCALMDG----VSMMGLHCYDGHRTEHDFTQRKKEA 192 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + A + + L Y + G S + ++ + Sbjct: 193 DTSA------AQIKTICSHLCEKGYSCKTLVLGGSPSMPCYVDFPRTGYEVYLSPGTYFV 246 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIA-VAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 G + Y +++ V + + L L + S G +G I Sbjct: 247 NDY----GYTMKYPDLVFTPGAAVMTRVISCPLKGHFTLDLG---YKGIASDPEGTRGVI 299 Query: 303 KG 304 G Sbjct: 300 AG 301 >gi|167040121|ref|YP_001663106.1| alanine racemase domain-containing protein [Thermoanaerobacter sp. X514] gi|300914206|ref|ZP_07131522.1| alanine racemase domain protein [Thermoanaerobacter sp. X561] gi|307724559|ref|YP_003904310.1| alanine racemase domain-containing protein [Thermoanaerobacter sp. X513] gi|166854361|gb|ABY92770.1| alanine racemase domain protein [Thermoanaerobacter sp. X514] gi|300889141|gb|EFK84287.1| alanine racemase domain protein [Thermoanaerobacter sp. X561] gi|307581620|gb|ADN55019.1| alanine racemase domain protein [Thermoanaerobacter sp. X513] Length = 354 Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 53/355 (14%), Positives = 115/355 (32%), Gaps = 57/355 (16%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 + L+I+L L+ N ++ L N + V K ++A + GV+ Sbjct: 2 YPLLRINLVKLRENTQTIVNLCEKKNIKVVGVTKVFCA------IPEVAQTMVKGGVEIL 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 + ++ KL +L + + + I + S + + + Sbjct: 56 GDSRIKNLKKL--QHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQR 113 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQ 178 H L VD G R G+ ++ + + +L I ++L C + + Sbjct: 114 KIHEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTCYGSVIPTPDILEE 173 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTD-KINKSHPMQTVVT 237 L + I+ + + S G + L + G+ G T +I ++ + Sbjct: 174 LVEIKNSINKKFNLNLDIVSG-----GNSSSLYLVQNGLIPRGITQLRIGEAIVLGRETA 228 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 RI + + + + S YP + G+D+ V++ Sbjct: 229 FGDRIPHTYDDVF--TLEAQIVELKEKPS------------YPRGILGMDAFGERQVYVD 274 Query: 298 GKGFIKGYMVPILGK--ITM-----------------DMTMFDITDS-LSIEVGD 332 + + +G+ + M D + ++T+S +VGD Sbjct: 275 RGIMKRAILA--IGRQDVNMNDLIPIDSSIELIGSSSDHLIVNVTNSTYPYKVGD 327 >gi|289810431|ref|ZP_06541060.1| hypothetical protein Salmonellaentericaenterica_41087 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 169 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A+ N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVLNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|213618848|ref|ZP_03372674.1| hypothetical protein SentesTyp_21235 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 205 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A+ N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVLNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|16761283|ref|NP_456900.1| hypothetical protein STY2588 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141021|ref|NP_804363.1| hypothetical protein t0506 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161246|ref|ZP_03346956.1| hypothetical protein Salmoneentericaenterica_14910 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417159|ref|ZP_03350303.1| hypothetical protein Salmonentericaenterica_04172 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426986|ref|ZP_03359736.1| hypothetical protein SentesTyphi_16055 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649624|ref|ZP_03379677.1| hypothetical protein SentesTy_21405 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289827478|ref|ZP_06546090.1| hypothetical protein Salmonellentericaenterica_17177 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25380535|pir||AD0801 conserved hypothetical protein STY2588 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503582|emb|CAD07590.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136646|gb|AAO68212.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 367 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A+ N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVLNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|160902007|ref|YP_001567588.1| Orn/DAP/Arg decarboxylase 2 [Petrotoga mobilis SJ95] gi|160359651|gb|ABX31265.1| Orn/DAP/Arg decarboxylase 2 [Petrotoga mobilis SJ95] Length = 390 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 69/309 (22%), Gaps = 28/309 (9%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +D +K N++ + + VK N+ I L + G F V S E Sbjct: 19 LVLDTNYVKENYYKLKNSINDVEIFYAVKANS--H--PSILETLRDLGAS-FDVASRGEI 73 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KL ++ I F + +V K+ ++ Sbjct: 74 EKLMRLGISTDKMSFGNTIKKEKDIKFAWDNGVEYFAVDAEMEVEKIARNAPGAKVYGRL 133 Query: 129 DTGFNRLGLSLQ-----EALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER-- 181 N L + K L + + Sbjct: 134 SMSSNDSDWPLSGKFGTDVDHLIEILKYAKRKGLIPYGVSFHVGSQSYNKYKWKEAILNA 193 Query: 182 ---FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 F L ++ + ++ G + + I + + Sbjct: 194 SEVFEKLHKQKIDLKMLNLGGGIPVKHTKPVPEVEEIGEVI---NESIKEYLGWVDGLRV 250 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + AG + S + G G T+ Sbjct: 251 LSEPGRSMVGNAGIIASRVLLRGRKGTQNWVFLDTGVFHGLMETIENFRY---------- 300 Query: 299 KGFIKGYMV 307 + ++G Sbjct: 301 EVLVEGKEY 309 >gi|209885817|ref|YP_002289674.1| metal-activated pyridoxal enzyme [Oligotropha carboxidovorans OM5] gi|209874013|gb|ACI93809.1| metal-activated pyridoxal enzyme [Oligotropha carboxidovorans OM5] Length = 366 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 12/153 (7%) Query: 9 LKIDLTALKNNWHSMNALS---GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L +DL A++ N ++ + R K C +IA AG +V Sbjct: 21 LIVDLDAMQANIKALATRVSAFPSVRATPHAKA----HKCLEIARLQMAAGASRICCQNV 76 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLI----PVISSVPQLTFYSKLMS-CGV 120 E L + I + + + + + Q+ +K GV Sbjct: 77 AEVETLATGGITNILLSNEIIGADKARRLAEAARTAKVAVCVDHADQVAVLAKAADEAGV 136 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153 + +++D G R G+ E+ K Sbjct: 137 TLDILVEIDVGMGRCGVPSTESAVALAREVAKH 169 >gi|330819823|ref|YP_004348685.1| hypothetical protein bgla_2g07000 [Burkholderia gladioli BSR3] gi|327371818|gb|AEA63173.1| hypothetical protein bgla_2g07000 [Burkholderia gladioli BSR3] Length = 376 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 13/172 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++ N M + R VK CE + A AG + V++++E Sbjct: 13 IDVPRMQRNIERMQQRLDALGVRFRPHVKT----TKCEPVVRAQLAAGARGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSH 122 + ++ + G+ PG+ S V + G+S Sbjct: 69 EQFFAQGIDDIVYAV-GMVPGKLPQALALIRRGCDLKLVADSLVSAKAIAAFGREQGLSF 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 +++D +R GL+ + + G + A + Sbjct: 128 EVWVEIDVDGHRSGLAPADERLIEVGRALVEGGMKLGGVLAHAGSSYDYHRH 179 >gi|302520490|ref|ZP_07272832.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78] gi|318058993|ref|ZP_07977716.1| hypothetical protein SSA3_13681 [Streptomyces sp. SA3_actG] gi|318075519|ref|ZP_07982851.1| hypothetical protein SSA3_02062 [Streptomyces sp. SA3_actF] gi|333025743|ref|ZP_08453807.1| hypothetical protein STTU_3247 [Streptomyces sp. Tu6071] gi|302429385|gb|EFL01201.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78] gi|332745595|gb|EGJ76036.1| hypothetical protein STTU_3247 [Streptomyces sp. Tu6071] Length = 343 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 85/288 (29%), Gaps = 28/288 (9%) Query: 17 KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76 ++ H + G V K N YG G E++A G V + E +++ + Sbjct: 14 AHHKHVLEQFPG---IVPVCKGNGYGFGHERLAEEATRFGSDMLAVGTTYEAARIKDW-F 69 Query: 77 QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY---SKLMSCGVSHPYALQVDTGFN 133 + VL G+E + +I +SSV + ++ S + Sbjct: 70 SGDLLVLTPFRRGEEPVPLPDRVIRSVSSVDGVRALVGARVMIEVMSSMKRHGVTRSDLQ 129 Query: 134 RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIE 193 LG ++ + A + +L +SH K E Sbjct: 130 ALGSAIDDVRLEGFAIHLPLDRTDGTDAVEEVIA--WMDALRGARLPLHTMYVSHVKADE 187 Query: 194 ASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGEL 253 + P F+ + G + I+ + + GE Sbjct: 188 L----ARLSQQFPQTKFRARIGTLLWLGDHEAT----------QYRGTILDVTRVAKGER 233 Query: 254 VSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLG 297 Y +K T D + VAA G + G P L G+ G Sbjct: 234 FGYRQ-QKATSDGWLVVAAGGTSHGVGLEAPKALHGVMPRAKGVARAG 280 >gi|17547428|ref|NP_520830.1| hypothetical protein RSc2709 [Ralstonia solanacearum GMI1000] gi|17429731|emb|CAD16416.1| putative ipr001608 alanine racemase, n-terminal protein [Ralstonia solanacearum GMI1000] Length = 376 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 13/174 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M + R VK CE + A AG Q V++++E Sbjct: 13 IDVARMTRNIERMQQRLDALGVRFRPHVKT----TKCEPVVRAQLAAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSH 122 + I G+ P + S + G + Sbjct: 69 EQFFSAGI-CDIVYAVGMAPARLPQALALRRRGCDLKIVADSVTCAQAIAAFGGEHGEAF 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R G++ + T + G + A + ++ Sbjct: 128 DVWIEVDVDGHRSGIAPDDDRLITVGRVLAEGGMRLGGVLAHAGSSYEYHAHDA 181 >gi|304399031|ref|ZP_07380900.1| alanine racemase domain protein [Pantoea sp. aB] gi|304353491|gb|EFM17869.1| alanine racemase domain protein [Pantoea sp. aB] Length = 380 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 14/142 (9%) Query: 9 LKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++D L+ N M A + +K IA +G Q V+ Sbjct: 22 IEVDAARLECNLQHMQRKARAAGVALRPHIKT----HKSVWIARRQIESGAQGITVSKPS 77 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEK--------IIFDTNLIPVISSVPQLTFYSKLMSC 118 EG+ + + +HP LI + Sbjct: 78 EGISFIQGGIRDLLLAYPVVHPQSVAELLRLAVLHQVRLTLIADSLQGVAAIAEACQHQP 137 Query: 119 GVSHPYALQVDTGFNRLGLSLQ 140 G A++VD G +R+G++ Sbjct: 138 GCELAVAIKVDVGLHRIGVNPD 159 >gi|195953881|ref|YP_002122171.1| Ornithine decarboxylase [Hydrogenobaculum sp. Y04AAS1] gi|195933493|gb|ACG58193.1| Ornithine decarboxylase [Hydrogenobaculum sp. Y04AAS1] Length = 400 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 45/342 (13%), Positives = 95/342 (27%), Gaps = 22/342 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L I+L +K + + A+ VK N ++I L + G + V S Sbjct: 46 PTLVINLDRIKERFIELQEALKEAKIYYAVKAN----DHQEILALLNDLG-SGYEVASSW 100 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E K+ + + I + S+ KL + Sbjct: 101 ELEKVLRLGVDGSRIISSNPVKPLDFIDYAYKSGIKAFSIDSYKEIDKLKKIAPRSRVYI 160 Query: 127 QV--------DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV--NS 176 ++ N+ G+ + ALD + + + + ++ + Sbjct: 161 RLIVPNEGSDWPLTNKFGVDVDTALDILEYAKYQGFVPYGITFHVGSQCNNLRNWFIGIK 220 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 E + I + + + G + K PM+ + Sbjct: 221 KAWELWEKAIYKDIKLTMLNLGGGIPVNYQYESLSIRDIGSYIEALLQKYFLIKPMEVQI 280 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 ++ L ++ + +S G +G L G+ Sbjct: 281 EPGRGLVGDAGVLVSSVIGKTTKYINGEESYWIYLDTGVFNGLAEVLGGISYPMYAEQKG 340 Query: 297 GGKGF-IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 K + I G +MD + + T +++GD + I Sbjct: 341 EIKPYTIAGVSCD-----SMD-IISNFTYLPEVDIGDRVYIM 376 >gi|307297660|ref|ZP_07577466.1| alanine racemase domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916920|gb|EFN47302.1| alanine racemase domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 353 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 113/341 (33%), Gaps = 27/341 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ ++ ++ N + L+ AAV K G IA L N+GV++ + Sbjct: 1 MAKVVVNTVSIGANAKRVRELAEVNGVEIAAVTKVV---CGDPTIASILLNSGVKEIGES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCGVSH 122 +E ++ + +L + + + D +I + L+ G Sbjct: 58 RLENISRITNAGIDSDFLLLRLPERSKFREVLDNVDTVLIGDLDSLSKLYELSSETGQEV 117 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + +DTG R G+ EA +F L I ++L C + ++F Sbjct: 118 NFIYMIDTGDLREGVMYYEAESVLEKAFEIAGENLEGIGTNLGCFGGVIATP-----KKF 172 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 L+S + L +G L + G K + + + Sbjct: 173 EILLS----LGEFLRKKTGYSLRRYSAGNTASLPLLEKGIVPKGINHFRLGESILCGTDV 228 Query: 243 ILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY--ADGYPL--TLSGLDSEHSPSVFLGG 298 R+ ++ ++ + IG D + + LG Sbjct: 229 TNNREVPGTLQDTFTLYGEVIEIAEKPSVPIGEIGRDAFGRIPHFEDKGKRIKAILDLGE 288 Query: 299 K-GFIKGYMVPILG--KI---TMDMTMFDITDSL-SIEVGD 332 + G + P++G ++ + D + D+T+S S VGD Sbjct: 289 QDVLPSG-LTPLVGGCEVLHASSDHLIVDVTESEKSFSVGD 328 >gi|323528944|ref|YP_004231096.1| alanine racemase domain-containing protein [Burkholderia sp. CCGE1001] gi|323385946|gb|ADX58036.1| alanine racemase domain protein [Burkholderia sp. CCGE1001] Length = 376 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 11/173 (6%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++ N M + + VK CE++ A +AG V++++E Sbjct: 13 IDVERMQRNIARMQQRMNALGVKFRPHVKT----TKCEQVVRAQMDAGASGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + + I S + Sbjct: 69 EQFFAGGVRDIVYAVGMAPTKLPQALALRRQGCDLKIVADSVACAEAIVAFGREHDERFE 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++D +R G++ ++ + T G + + A + + Sbjct: 129 VWIEIDVDGHRSGIAPEDDMLLTVGKILSDGGMPAGGVLAHAGSSYDYDTHDE 181 >gi|167037459|ref|YP_001665037.1| alanine racemase domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115873|ref|YP_004186032.1| alanine racemase domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856293|gb|ABY94701.1| alanine racemase domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928964|gb|ADV79649.1| alanine racemase domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 354 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 114/354 (32%), Gaps = 55/354 (15%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 + L+I+L L+ N ++ L N + V K ++A + GV+ Sbjct: 2 YPLLRINLVKLRENTQTIVNLCEKKNIKVVGVTKVFCA------IPEVAQTMVKGGVEIL 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 + ++ KL +L + + + I + S + + + Sbjct: 56 GDSRIKNLKKL--QHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQR 113 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQ 178 H L VD G R G+ ++ + + +L I ++L C + + Sbjct: 114 KIHEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTCYGSVIPTPDILEE 173 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 L + I+ + + + G S + T + Sbjct: 174 LVEIKNSINKKFNL----------------NLDIVSGGNSSSLYLVQNGLIPREITQLRI 217 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 I+L R+ G+ + + T ++ I + YP + G+D+ V++ Sbjct: 218 GEAIVLGRETAFGDRIPHTYDDVFTLEAQIVELKEKPS--YPRGILGMDAFGERQVYVDR 275 Query: 299 KGFIKGYMVPILGK--ITM-----------------DMTMFDITDS-LSIEVGD 332 + + +G+ + M D + ++T+S +VGD Sbjct: 276 GIMKRAILA--IGRQDVNMNDLIPIDSSIELIGSSSDHLIVNVTNSTYPYKVGD 327 >gi|326390148|ref|ZP_08211709.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993796|gb|EGD52227.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 354 Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 15/203 (7%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 + L+I+L L+ N ++ L N + V K ++A + GV+ Sbjct: 2 YPLLRINLEKLRENTQTIVNLCEKRNIKVVGVTKVFCA------IPEVAQTMVKGGVEIL 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 + ++ KL +L + + + I + S + + + Sbjct: 56 GDSRIKNLKKL--QHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQR 113 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQ 178 H L VD G R G+ ++ + + +L I ++L C + + Sbjct: 114 KIHEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTCYGSVIPTPDILEE 173 Query: 179 LERFRTLISHYKGIEASLASSSG 201 L + I+ + + S Sbjct: 174 LVEIKNSINKKFNLNLDIVSGGN 196 >gi|298242855|ref|ZP_06966662.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963] gi|297555909|gb|EFH89773.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963] Length = 370 Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 11/153 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL L+ N + AR +K +IA AG + Sbjct: 16 LLVDLARLEKNIRRYADSAAKARVRLRPHIKT----HKTLEIAKMQLQAGAGGITAAKLG 71 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV-----ISSVPQLTFYSKLMSCGVS 121 E + I P + S G + Sbjct: 72 EAEVFAEAGIEDIFVAYPIIGPEKALRAARLAQHCRLIVGVESEKGVQQLSEAASQIGST 131 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154 +++D+G R G+ + A + Sbjct: 132 LLVRVEIDSGLGRTGVGQEAAGKLCRQVLDAPG 164 >gi|309812008|ref|ZP_07705774.1| alanine racemase, N-terminal domain protein [Dermacoccus sp. Ellin185] gi|308434066|gb|EFP57932.1| alanine racemase, N-terminal domain protein [Dermacoccus sp. Ellin185] Length = 200 Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 6/93 (6%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 RL DL L+ N +M +L +A A VK +IA +A V + Sbjct: 5 PRLVADLDVLERNIDAMASLGRDAGVALRPHVKT----HKMPEIATMQRDAATHGITVAT 60 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT 97 + E + Sbjct: 61 IGEAEVFVDAGFDDVSIAYPLWVDDEAGRRLRA 93 >gi|171317786|ref|ZP_02906967.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5] gi|171097070|gb|EDT41925.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5] Length = 376 Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 11/173 (6%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++NN M A + + VK C+ + A AG Q V++++E Sbjct: 13 IDVDRMRNNIARMQAHLDALGVKFRPHVKT----TKCQHVVDAQIAAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + I + I S + G Sbjct: 69 EQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIIADSLETAHAIAAFGREHGERFD 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R G+ + L G + A + N+ Sbjct: 129 VWIEVDVDGHRSGIRPDDGLLIDVGRALVDGGMALGGVLAHAGSSYEYDTHNA 181 >gi|295837780|ref|ZP_06824713.1| alanine racemase [Streptomyces sp. SPB74] gi|197698937|gb|EDY45870.1| alanine racemase [Streptomyces sp. SPB74] Length = 343 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 17 KNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTP 76 ++ H + G V K N YG G E++A G V + E +++ + Sbjct: 14 AHHKHVLEQFPG---IVPVCKGNGYGFGHERLAEEATRFGSDMLAVGTTYEAARIKDW-F 69 Query: 77 QARIFVLYGIHPGQEKIIFDTNLIPVISSV 106 + VL G+E + +I +SSV Sbjct: 70 SGDLLVLTPFRRGEEPVPLPDRVIRSVSSV 99 >gi|300310473|ref|YP_003774565.1| amino acid aldolase or racemase [Herbaspirillum seropedicae SmR1] gi|300073258|gb|ADJ62657.1| amino acid aldolase or racemase protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 52/181 (28%), Gaps = 13/181 (7%) Query: 1 MHSNEFLR--LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M+ ID+ ++ N M + R VK C ++ A AG Sbjct: 1 MNLASLPTPAALIDVARMQRNITRMQQRMDALGVRFRPHVKT----TKCNEVVQAQLQAG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTF 111 V++++E + ++ + + I S V Sbjct: 57 ASGITVSTLKEAEQFFAAGISDIVYAVGMAPTKLGQALALRRQGCNLKIVADSVVCAEAI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 + + +++D +R G++ ++A + G + A + Sbjct: 117 VAFGQAQEECFDVWIEIDVDGHRSGIAPEDATLLAVGNVLHAGGMRIGGVIAHAGSSYDY 176 Query: 172 S 172 Sbjct: 177 D 177 >gi|282864522|ref|ZP_06273577.1| alanine racemase domain protein [Streptomyces sp. ACTE] gi|282560461|gb|EFB66008.1| alanine racemase domain protein [Streptomyces sp. ACTE] Length = 362 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 96/347 (27%), Gaps = 42/347 (12%) Query: 7 LRLKIDLTALKNNWH-SMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L L ID + + + G V K N YG G ++ G V +V Sbjct: 3 LTLTIDTERWREHHRGVLGQYPG---LVPVCKGNGYGFGHHRLMRETTRLGTGLAAVGTV 59 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA 125 +E + + + P + VL G+ I V+SS + H Sbjct: 60 QEAARAQDFYP-GDLLVLTPYRNGEASPALSDRTIRVVSSPGHCDGLAG-------HRVV 111 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +++ + R G++ + + HL + R L Sbjct: 112 VELRSSMRRHGITEADLPALRPVMS---GWEFEGFSIHLPLNRVGGAGGAEEVASWVRRL 168 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 + S H + PG T +R++ + Sbjct: 169 REERMPLRQVFVSHLSAEEMAGLHAEF--PGTRFRLRTG-TKLWLGAPKATRYTSRVLDV 225 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGF 301 + G + G ++ + + V + G + G P TLSGL V +G Sbjct: 226 TRPERGRGLGAGRRRPASGP-HLVVVSGGVSHGVGLRAPRTLSGLRDRARHLVGIGHACL 284 Query: 302 --------IKGYMVPILG------KITMDMTMFDITDSLSIEVGDYI 334 G + + D +VGD + Sbjct: 285 DHHLSPFVWDGVRCRFAAPPRLQESV----LLVR-GDGPPPKVGDEV 326 >gi|239834636|ref|ZP_04682964.1| Serine racemase [Ochrobactrum intermedium LMG 3301] gi|239822699|gb|EEQ94268.1| Serine racemase [Ochrobactrum intermedium LMG 3301] Length = 418 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 13/142 (9%) Query: 9 LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ++ID L N M + R +K IA G + + Sbjct: 57 VEIDEDRLIRNLKEMQQKADKAGVRLRPHIKT----HKSLMIANRQLQLGAIGVTASKPD 112 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-------SSVPQLTFYSKLMSCG 119 E + + + P + + I + + + Sbjct: 113 EALVFVEGGIPSVTLAYPIVRPDSIGRLIRSAQIRDTELMFIAAHEIGIQAIGAAAEAHD 172 Query: 120 VSHPYALQVDTGFNRLGLSLQE 141 V L+VD G R+G+ Q+ Sbjct: 173 VKLGVFLKVDVGLGRVGVKPQD 194 >gi|291533520|emb|CBL06633.1| Diaminopimelate decarboxylase [Megamonas hypermegale ART12/1] Length = 372 Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%) Query: 1 MHSNEFLR-LK-IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 M + ++ L+ I L ++ N++ + + +K N+ + I L G Sbjct: 13 MLAQKYATPLEVISLEHIEENYNLLCKHIPRLKVFYAIKANS----AKCILEKLIKLG-S 67 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVL 83 +F V S E L + Sbjct: 68 NFDVASAGEIRLLSKMGVSGEKMIY 92 >gi|307727882|ref|YP_003911095.1| alanine racemase domain-containing protein [Burkholderia sp. CCGE1003] gi|307588407|gb|ADN61804.1| alanine racemase domain protein [Burkholderia sp. CCGE1003] Length = 376 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M VK CE++ A AG + V++++E Sbjct: 13 IDVARMNRNIERMQQRMNTLGVSFRPHVKT----TKCEQVVRAQLAAGARGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + + I S + + Sbjct: 69 EQFFAAGIRDIVYAVGMAPTKLPQALALRRQGCDLKIVADSVACAEAIVAFGRRYDEAFE 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++D +R G++ ++ L T + G + A + + Sbjct: 129 VWIEIDVDGHRSGIAPEDDLLITVAATLSNGGMYVGGVLAHAGSSYDYDTHDE 181 >gi|254505511|ref|ZP_05117658.1| Alanine racemase, N-terminal domain family [Vibrio parahaemolyticus 16] gi|219551628|gb|EED28606.1| Alanine racemase, N-terminal domain family [Vibrio parahaemolyticus 16] Length = 354 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 8/206 (3%) Query: 5 EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVK-DNAYGLGCEKIAPALYNAGVQDFF 61 + + I L + +N H++ + + A V K AY ++ A+ G+ Sbjct: 3 HYPCINIHLDTITHNAHNLVSACERFGVKPAGVTKLACAY----PEVGEAILAGGIGILA 58 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 + ++ KLR + + + I +E + + + Q + + Sbjct: 59 DSRIQNLKKLRHLDGETMLLRIPAISQAREVVQYADISLNSELETLQALAIEAVKQHKIH 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLE 180 + +E L + QL + ++LAC S N QL Sbjct: 119 QVIIMHDMGDLREGSFYQEETLQLAREVMKLEGLQLVGLGTNLACYGGVEPSIDNQTQLI 178 Query: 181 RFRTLISHYKGIEASLASSSGILLGP 206 I I S S + P Sbjct: 179 ALAQQIETEHNIRLSYLSGASSAGLP 204 >gi|156740573|ref|YP_001430702.1| alanine racemase domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156231901|gb|ABU56684.1| alanine racemase domain protein [Roseiflexus castenholzii DSM 13941] Length = 349 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 12/151 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 + IDL L+ N A A +K +IA AG + Sbjct: 11 VVIDLDRLEANIARFQAHLDRHGIANRPHIKT----HKIPQIAQMQIAAGAVGITCQKLG 66 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-----SKLMSCGVS 121 E + + + + + +S + + G+ Sbjct: 67 EAEVMADAGITDIFLPYNILGAAKLERLVALARRVQVSVTADSPDVVTGLGAAMSGAGLE 126 Query: 122 HPYALQVDTGFNRLGLS-LQEALDFTHNSFN 151 P ++ DTG R G+ EA + Sbjct: 127 LPVLVECDTGMGRCGVQTPAEAAELAFQIAR 157 >gi|222099782|ref|YP_002534350.1| Ornithine decarboxylase [Thermotoga neapolitana DSM 4359] gi|221572172|gb|ACM22984.1| Ornithine decarboxylase [Thermotoga neapolitana DSM 4359] Length = 386 Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 80/296 (27%), Gaps = 18/296 (6%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL+ ++ + M A A VK N+ +I L G F V S E KL Sbjct: 20 DLSVVEKKFLEMKAALKGADIYYAVKANS--H--PRILSLLAKLGCN-FDVASKGEIEKL 74 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + +E I F + +V K+ +++ T Sbjct: 75 LALGISGKRMSFGNTIKKEEDIAFAYKNGIRLFAVDSEMEIEKVAISAPGSRIFVRIATD 134 Query: 132 FNRLGLS--------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL--ER 181 + ALD + KL + + +P S ++ + + Sbjct: 135 GSDADWPLSRKFGTDPDHALDLLFYAAKMKLIPAGVSFHVGSQNLNPESWRKAISVAGKI 194 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F+ + + + + G + + I+++ + + Sbjct: 195 FKKAMRSGLNLFLLNVGGGFPVQHRKPIPTMEEIGRVI---EEAIDENLWFVHGLKLISE 251 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 AG LV+ K G G T+ + E Sbjct: 252 PGRYMVGEAGWLVTKVLLKSERNGEKWVYLDAGVFHGLAETMQNFEYEVRVLGKEN 307 >gi|168817905|ref|ZP_02829905.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344710|gb|EDZ31474.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086793|emb|CBY96565.1| hypothetical protein SENTW_2484 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 367 Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 96/347 (27%), Gaps = 24/347 (6%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP----SSHVNSVQL 179 L VD G R G+ E + + + N Sbjct: 119 VLLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGTNFNCYGTVLPTVKNGEDF 178 Query: 180 ERFRTLISHYKGIEASLASSSGILL--------GPNYHFQLTRPGISLYG-GTDKINKSH 230 + GI S+ P L G+ +G + + Sbjct: 179 LALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPQGLNHLRIGGLHEFGIEYVDMKYLN 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD--S 288 + L E++ + + L A + + + Sbjct: 239 EFHHSAKPVGKACSDMYILEAEIIELNSKPTVPVGELGVDAFLQSKTFVDRGIRRRALLA 298 Query: 289 EHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLS-IEVGDYI 334 V + ILG+ + D T+ DI D ++VGD + Sbjct: 299 FGRQDVPSDNCVPCDDAIT-ILGQTS-DHTLVDIEDCRQSLKVGDVV 343 >gi|153831634|ref|ZP_01984301.1| metal-activated pyridoxal enzyme [Vibrio harveyi HY01] gi|148872144|gb|EDL70961.1| metal-activated pyridoxal enzyme [Vibrio harveyi HY01] Length = 368 Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 8/81 (9%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAG 56 M N+ L +D+ +K N +M + K IA +AG Sbjct: 1 MDINQLETPSLFVDIDKMKTNIKAMQQRINDLGLTLRPHTKA----HKIPAIAQMQLDAG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQ 77 Q V + E + + Sbjct: 57 AQGICVAKLGEAEVMAQGGIK 77 >gi|160935372|ref|ZP_02082754.1| hypothetical protein CLOBOL_00267 [Clostridium bolteae ATCC BAA-613] gi|158441730|gb|EDP19430.1| hypothetical protein CLOBOL_00267 [Clostridium bolteae ATCC BAA-613] Length = 371 Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 17/187 (9%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 ++ N M +++GNA R VK +K+ G+ F ++ E + Sbjct: 24 DIIEQNIKEMISVAGNANRLWPHVKS----HKMKKLVELQIKMGITRFKCATIAEAQMVA 79 Query: 73 LYTPQARIFVLYGIHPGQEKI------IFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 + + P ++ T + + Q++ + + L Sbjct: 80 ESGASDALVAYPLVGPNIDRFLELVKTYAGTRFWAIGDDLEQVSLLNSAAGSQETIVNFL 139 Query: 127 -QVDTGFNRLGLSLQEALDFTHNSFNKKL-----GQLSLIISHLACADDPSSHVNSVQLE 180 V+ G NR G+S+ DF N + +A D V+ + Sbjct: 140 ADVNMGTNRTGISINTLPDFYRNCCKLPWLSVQGLHCYDGNNGIAEYDAREKAVDKIDRA 199 Query: 181 RFRTLIS 187 F T+ + Sbjct: 200 VFSTVAA 206 >gi|217077735|ref|YP_002335453.1| ornithine decarboxylase [Thermosipho africanus TCF52B] gi|217037590|gb|ACJ76112.1| ornithine decarboxylase [Thermosipho africanus TCF52B] Length = 387 Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 18/287 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + N++ VK N+ +I L + G F V S E Sbjct: 22 LVMDLEVVRDNYKRLVENVKNSKIYYAVKANS--H--IEILKLLRDLG-SYFDVASRPEI 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KL + I F + +V K+ +++ Sbjct: 77 EKLLSIGVEPERMSFGNTIKKSSDIAFAYEKGIKMFAVDSEMEIEKIAKNAPGSDIYVRI 136 Query: 129 DTG----------FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 T + G S+ A+ +++ L + + + +P + +++ Sbjct: 137 STNGMEDDADWPLTKKFGTSVDHAISLVKYAYSLGLNPIGVSFHVGSQNYNPENWRVAIR 196 Query: 179 LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTA 238 + GIE + ++ G + + P + + + VT Sbjct: 197 EVSVVFEEARRMGIEMKMVNTGGGMPVK---YSKNIPTVEEISAVINEAIADYIGEDVTV 253 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 AG +++ + + G G T+ Sbjct: 254 ILEPGRSMVGNAGTMITSVILRSQKGEEKWIYTDAGVFHGLTETIQN 300 >gi|169334999|ref|ZP_02862192.1| hypothetical protein ANASTE_01405 [Anaerofustis stercorihominis DSM 17244] gi|169257737|gb|EDS71703.1| hypothetical protein ANASTE_01405 [Anaerofustis stercorihominis DSM 17244] Length = 354 Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 108/344 (31%), Gaps = 30/344 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 F ++KIDL ++ N + A+ K + E IA L G Sbjct: 2 FPKIKIDLHGIRENTTRVCDKCKSIGIDVTAITKVFLAD------ENIAECLVTGGTTAL 55 Query: 61 FVTSVEEGVKLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-C 118 + +E L+ +++ + + + + + + S + + +K Sbjct: 56 GDSRIE---NLKNLGCFNMEKWLVRIPMESEIEDVIKYSDVSLNSEIKTIRLLNKEAYKQ 112 Query: 119 GVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADD-PSSHVNS 176 +H L D G R G + L K +L I ++L C Sbjct: 113 DTTHKVILMADLGDLREGYFSTDDLLSDVDKVLQMKNIELYGIGTNLTCFGAIIPRPETL 172 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 +L + + I + IE + S G + + L G + G + Sbjct: 173 QKLVKIKERIENDFDIELKVVSG-----GNSSSYTLVDRGEMIDGINSLRLGEVILLGNE 227 Query: 237 TAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFL 296 T+ + L + + K I I P ++ + + Sbjct: 228 TSYGTPVEGLHHDNFILEAQIVELKEKPSVPIGEIGIDAFGNKPEFVNKGTMKRAIIAVG 287 Query: 297 GGKGFIKGYM-----VPILGKITMDMTMFDITDSLSI-EVGDYI 334 I G + ILG + D T+ D+T+ I ++GD + Sbjct: 288 KQDVRIDGMTPVDSDIEILGASS-DHTILDLTNVNKIYKLGDTV 330 >gi|115360046|ref|YP_777184.1| alanine racemase domain-containing protein [Burkholderia ambifaria AMMD] gi|115285334|gb|ABI90850.1| alanine racemase domain protein [Burkholderia ambifaria AMMD] Length = 376 Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 11/170 (6%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++NN M A + + VK C+++ A AG Q V++++E Sbjct: 13 IDVDRMRNNIARMQAHLDALGVKFRPHVKT----TKCQQVVDAQIAAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + I + I S G Sbjct: 69 EQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIVADSLETANAIAEFGREHGERFD 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 ++VD +R G+ +AL G + A + Sbjct: 129 VWIEVDVDGHRSGIRPDDALLIDVGRALVDGGMALGGVLAHAGSSYEYDT 178 >gi|310658592|ref|YP_003936313.1| ornithine racemase [Clostridium sticklandii DSM 519] gi|226885219|emb|CAQ42981.1| ornithine racemase [Clostridium sticklandii DSM 519] gi|308825370|emb|CBH21408.1| ornithine racemase [Clostridium sticklandii] Length = 353 Score = 44.3 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 + ++ ID+ L++N + L G +TA VVK N I L + V F Sbjct: 2 YPKITIDINKLRDNATFIKNLCEKGGCKTALVVKSMCAN---HD---IVKELDSVEVDYF 55 Query: 61 FVTSVE 66 + ++ Sbjct: 56 ADSRIQ 61 >gi|163854345|ref|YP_001628643.1| putative amino acid aldolase or racemase [Bordetella petrii DSM 12804] gi|163258073|emb|CAP40372.1| putative amino acid aldolase or racemase [Bordetella petrii] Length = 379 Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 6/73 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL A ++N M A + K C +IA G + Sbjct: 28 PSLVLDLDAFESNLRQMQAWADRHGVALRPHAKA----HKCPEIARRQLALGARGICCQK 83 Query: 65 VEEGVKLRLYTPQ 77 V E + Sbjct: 84 VSEALPFVAAGID 96 >gi|66045783|ref|YP_235624.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 [Pseudomonas syringae pv. syringae B728a] gi|63256490|gb|AAY37586.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 [Pseudomonas syringae pv. syringae B728a] Length = 397 Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 91/336 (27%), Gaps = 18/336 (5%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +D + N + A+ K N + AL G+ F V S+ E Sbjct: 44 TVDPRWITQNAQQFSGCFPGTVLYAM-KANP----LVHVLEALSQGGINHFDVASLAE-- 96 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 ++ V Y ++P + + L +L P Sbjct: 97 -VQTVHNTLPNAVQYLMNPVKSRHCLHEAYYRHGVRSFVLDSEEELSKLRDVLPERDSTI 155 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERFRTLI 186 + F R S A+ F + ++ +A + D S S Q + Sbjct: 156 SMFVRYAPSESTAVYDLRGKFGASPALATQLVHQVAASTDWSLGLSFHVGSQAIEDGPWL 215 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +A + ++ + + ++ G T + + + L Sbjct: 216 AALDDADAIVRDTAQHVRHLDIGGGFPGNYLNSMGNTPDLVGRVCEHIQTSPTLK-DLNL 274 Query: 247 KALAGELVSYG----GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 AG + YG + L+R G G L Sbjct: 275 ICEAGRGLVYGGMSLFARVLSRREHSVFCGAGIFGGLLSAQQWLQFPARVWRDAAPYAGS 334 Query: 303 KGYMVPILGKIT--MDMTMFDITDSLSIEVGDYIQI 336 I G MD F + + I GD+++ Sbjct: 335 AEATFNIFGPTCDSMDRLAFPYSLASDIREGDWLEF 370 >gi|207721615|ref|YP_002252054.1| alanine racemase [Ralstonia solanacearum MolK2] gi|206586776|emb|CAQ17361.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia solanacearum MolK2] Length = 376 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M + R VK CE + A +AG Q V++++E Sbjct: 13 IDVARMTGNIARMQQRLDALGVRFRPHVKT----TKCEPVVRAQLDAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSH 122 + + ++ + G+ P + S + + G + Sbjct: 69 EQFFAAGIRDIVYAV-GMAPTRLPQALALRRRGCDLKIVADSVACAQAIAAFGSAHGEAF 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R G+ + + + G + A + ++ Sbjct: 128 EVWIEVDVDGHRSGIVPDDDRLISVGRVLAEGGMRLGGVLAHAGSSYEYHAHDA 181 >gi|167549636|ref|ZP_02343395.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325432|gb|EDZ13271.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 367 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|62180930|ref|YP_217347.1| hypothetical protein SC2360 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128563|gb|AAX66266.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715409|gb|EFZ06980.1| Putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 367 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|16765685|ref|NP_461300.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412745|ref|YP_149820.1| hypothetical protein SPA0506 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167993046|ref|ZP_02574141.1| amino acid racemase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229734|ref|ZP_02654792.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168242483|ref|ZP_02667415.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261619|ref|ZP_02683592.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465931|ref|ZP_02699801.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444323|ref|YP_002041622.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448158|ref|YP_002046414.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469314|ref|ZP_03075298.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262878|ref|ZP_03162952.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361679|ref|YP_002141315.1| hypothetical protein SSPA0470 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242172|ref|YP_002216431.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388455|ref|ZP_03215067.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929244|ref|ZP_03220387.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353473|ref|YP_002227274.1| hypothetical protein SG2387 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857776|ref|YP_002244427.1| hypothetical protein SEN2340 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583153|ref|YP_002636951.1| hypothetical protein SPC_1348 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912362|ref|ZP_04656199.1| hypothetical protein SentesTe_14691 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420901|gb|AAL21259.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127002|gb|AAV76508.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194402986|gb|ACF63208.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406462|gb|ACF66681.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455678|gb|EDX44517.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631333|gb|EDX49893.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093155|emb|CAR58599.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241133|gb|EDY23753.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936688|gb|ACH74021.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605553|gb|EDZ04098.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321788|gb|EDZ06987.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273254|emb|CAR38217.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205328822|gb|EDZ15586.1| amino acid racemase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335650|gb|EDZ22414.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338419|gb|EDZ25183.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349583|gb|EDZ36214.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709579|emb|CAR33924.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467680|gb|ACN45510.1| hypothetical protein SPC_1348 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247564|emb|CBG25391.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994459|gb|ACY89344.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158916|emb|CBW18429.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913349|dbj|BAJ37323.1| hypothetical protein STMDT12_C23800 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222940|gb|EFX48011.1| Putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617103|gb|EFY14009.1| hypothetical protein SEEM315_08805 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617591|gb|EFY14490.1| hypothetical protein SEEM971_01889 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624779|gb|EFY21608.1| hypothetical protein SEEM973_01357 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630329|gb|EFY27099.1| hypothetical protein SEEM974_07706 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634509|gb|EFY31242.1| hypothetical protein SEEM201_19711 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639220|gb|EFY35912.1| hypothetical protein SEEM202_08999 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640083|gb|EFY36750.1| hypothetical protein SEEM954_16279 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645697|gb|EFY42221.1| hypothetical protein SEEM054_15998 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652061|gb|EFY48424.1| hypothetical protein SEEM675_01167 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656233|gb|EFY52530.1| hypothetical protein SEEM965_15354 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659385|gb|EFY55632.1| hypothetical protein SEEM19N_01703 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665845|gb|EFY62028.1| hypothetical protein SEEM801_10366 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669916|gb|EFY66057.1| hypothetical protein SEEM507_14210 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673901|gb|EFY69998.1| hypothetical protein SEEM877_08579 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678660|gb|EFY74716.1| hypothetical protein SEEM867_09322 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683545|gb|EFY79559.1| hypothetical protein SEEM180_09966 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687620|gb|EFY83590.1| hypothetical protein SEEM600_13387 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130690|gb|ADX18120.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193545|gb|EFZ78750.1| hypothetical protein SEEM581_00860 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198452|gb|EFZ83554.1| hypothetical protein SEEM501_10272 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204564|gb|EFZ89567.1| hypothetical protein SEEM460_00150 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208498|gb|EFZ93437.1| hypothetical protein SEEM020_08866 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213635|gb|EFZ98424.1| hypothetical protein SEEM6152_06983 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218329|gb|EGA03039.1| hypothetical protein SEEM0077_15566 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222916|gb|EGA07265.1| hypothetical protein SEEM0047_18987 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224509|gb|EGA08791.1| hypothetical protein SEEM0055_20206 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232324|gb|EGA16427.1| hypothetical protein SEEM0052_09396 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235642|gb|EGA19726.1| hypothetical protein SEEM3312_11961 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241198|gb|EGA25234.1| hypothetical protein SEEM5258_16684 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244940|gb|EGA28942.1| hypothetical protein SEEM1156_21517 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250059|gb|EGA33953.1| hypothetical protein SEEM9199_06316 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253843|gb|EGA37668.1| hypothetical protein SEEM8282_06759 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254980|gb|EGA38771.1| hypothetical protein SEEM8283_18395 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259833|gb|EGA43465.1| hypothetical protein SEEM8284_18670 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264146|gb|EGA47653.1| hypothetical protein SEEM8285_16403 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270844|gb|EGA54282.1| hypothetical protein SEEM8287_08645 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624183|gb|EGE30528.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628566|gb|EGE34909.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989291|gb|AEF08274.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 367 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|33599435|ref|NP_886995.1| putative metal-activated pyridoxal enzyme [Bordetella bronchiseptica RB50] gi|33567031|emb|CAE30944.1| putative metal-activated pyridoxal enzyme [Bordetella bronchiseptica RB50] Length = 381 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 11/172 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +D+ +++N M VK C +A A AG + V++++ Sbjct: 17 AIVDVARMQHNIARMQDRMNGLGVSLRPHVKT----SKCTPVALAQLAAGARGVTVSTLK 72 Query: 67 EGVKLRLYTPQARIF---VLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMSCGVS 121 E + ++ + P + I ++ T + Sbjct: 73 EAEQFFAAGIADILYAVGMAEHRLPAALALRRRGCDLKIITDNAESARTIADFGRAHDEV 132 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 +++DT +R G+ +EA + + G + A + Sbjct: 133 FEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDT 184 >gi|119716914|ref|YP_923879.1| alanine racemase domain-containing protein [Nocardioides sp. JS614] gi|119537575|gb|ABL82192.1| alanine racemase domain protein [Nocardioides sp. JS614] Length = 360 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 22/146 (15%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L++D+ L+ N + +A+T IA AG Sbjct: 13 LRVDVARLRANIERTTRWAAAGGVSLRPHAKT----------HKSPDIARLQLAAGAIGL 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++ E + + + + D + + + + + Sbjct: 63 TVATIGEAEVFVEHGAEDVFVAYPLWLTENGARRLRDLADRADLAIGVDSAEGARLAARL 122 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEA 142 G ++VD+G +R G+ ++A Sbjct: 123 LEGSGVVALVEVDSGQHRSGVDAEDA 148 >gi|46117817|ref|XP_384835.1| hypothetical protein FG04659.1 [Gibberella zeae PH-1] Length = 366 Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 44/378 (11%), Positives = 91/378 (24%), Gaps = 64/378 (16%) Query: 7 LRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DL ++ N + L +K IA L AG + V Sbjct: 16 PSMIVDLDVMEANIKKLMDRLLPTGRNIRPHLKT----TKSAIIAKKLVAAGAKGGCVAK 71 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV---- 120 + E + + + P + + + + + + Sbjct: 72 LSEAEAITAAGFTDLLITCEIVGPAKVRRLVELFKKHQDLRIVVDDADAATAINNALANS 131 Query: 121 ----SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 + +D G +R G+ + AL + K +L + + + Sbjct: 132 GSQDPINVLIDLDVGLHRTGVKPEGALPLARHIDTLKQMRLIGVQGY---------EGHL 182 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 L F+ L ++ L F + G D + P T + Sbjct: 183 QHLHDFQDRKEQCLESMRILTETAQEL--KKEGFNIEVVTTGGTGTADFC-ATVPGVTEL 239 Query: 237 TAEARIILIRKALAGELVSYGG------QKKLTRDSLIAVAAIGYAD-----GYPLTLSG 285 + I + Y + G G Sbjct: 240 QPGSFIFMDTDYRNAIGAYYSHSLSFLATVVSKQGERQVTIDTGLKTLTTDSGLSECKDQ 299 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDD 345 + G + +G S++VGD +++ I Sbjct: 300 RYVYNQLGDEHGSLNWEEGT--------------------PSLKVGDRVEMIPSHIDPTV 339 Query: 346 ------VALASGTTNYDL 357 A +GT ++ Sbjct: 340 NLHDYYYAHRNGTIE-EI 356 >gi|83747285|ref|ZP_00944327.1| Alanine racemase [Ralstonia solanacearum UW551] gi|207744276|ref|YP_002260668.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia solanacearum IPO1609] gi|83726109|gb|EAP73245.1| Alanine racemase [Ralstonia solanacearum UW551] gi|206595681|emb|CAQ62608.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia solanacearum IPO1609] Length = 376 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 13/174 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M + R VK CE + A AG Q V++++E Sbjct: 13 IDVARMTGNIARMQQRLDALGVRFRPHVKT----TKCEPVVRAQLAAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSH 122 + + ++ + G+ P + S + + G + Sbjct: 69 EQFFAAGIRDIVYAV-GMAPTRLPQALALRRRGCDLKIVADSVACAQAIAAFGSAHGEAF 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R G+ + + G + A + ++ Sbjct: 128 EVWIEVDVDGHRSGIVPDDDRLIAVGRVLAEGGMRLGGVLAHAGSSYEYHAHDA 181 >gi|256389571|ref|YP_003111135.1| alanine racemase domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256355797|gb|ACU69294.1| alanine racemase domain protein [Catenulispora acidiphila DSM 44928] Length = 352 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 85/279 (30%), Gaps = 24/279 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKD-NAYGLGCEKIAPA---LYNAGVQDFFV 62 L L ID + + + L+ + V K N YG+G + A L AGV+ V Sbjct: 3 LTLHIDAERWRAHQDEV--LARHPDLVPVAKGVNGYGIGIPNLMQAASKLAAAGVEITAV 60 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 + E + + + R+ VL G++ +I ++SV + + Sbjct: 61 GTAAEAEQAKDH-YSGRLLVLTPYLIGEDVRDLPDRVIRTVASVEAVEAL-------LGR 112 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 + + T R GL Q+ + P V L Sbjct: 113 RVVIDLMTSMRRFGLEKQDIPRLHAALES------DQARVEGFSVHMPLDRVAGDYLREV 166 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVTAEA 240 + + + L P+ L + +I + + A Sbjct: 167 SDWVDALVAAGIPVRTLFVSHLSPDEISTLAKR-HQGTTVRPRIGTQLWLGDRKALQARG 225 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGY 279 + ++K G+ Y K D + V + G A G Sbjct: 226 TVHSVQKVSKGDRFGYRQ-HKARGDGHLLVVSGGTAHGV 263 >gi|282863342|ref|ZP_06272401.1| alanine racemase domain protein [Streptomyces sp. ACTE] gi|282561677|gb|EFB67220.1| alanine racemase domain protein [Streptomyces sp. ACTE] Length = 343 Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 100/325 (30%), Gaps = 44/325 (13%) Query: 32 TAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQE 91 V K N YG G E++A G V + E +++ + + VL G+E Sbjct: 26 LVPVCKGNGYGFGHERLADETIRFGSDILAVGTTYEAARIKDW-FSGDLLVLTPFRRGEE 84 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 + ++ +SSV + V ++ + R G+ +E Sbjct: 85 PVPLPDRVVRSVSSV-------DGVHALVGARVVIECMSSMKRHGVKEEELGLL---HAA 134 Query: 152 KKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS-------SGILL 204 + +L HL S + L + + S Sbjct: 135 IEDVRLEGFALHLPLDRTDGSDAVEEVIAWMDRLRAARLPLHTMFVSHLRAEELARLQQQ 194 Query: 205 GPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTR 264 P F+ G + ++ + + G+ Y QK + Sbjct: 195 FPQTRFRARIGTRLWLGDHEATE----------YRGAVLDVTPVVKGDRFGYRQQKAAS- 243 Query: 265 DSLIAVAAIGYADGY----PLTLSGLDSEHSPSVFLGGKGFIKGYMVPIL--GK------ 312 D + V A G + G P L G+ + V G + + P + GK Sbjct: 244 DGWLVVVAGGTSHGVGLEAPKALHGVMP-RAKGVARAGLATVNRNLSPFVWAGKQRWFAE 302 Query: 313 -ITMDMTMFDI-TDSLSIEVGDYIQ 335 M +++ + +D+ +VGD + Sbjct: 303 PPHMQVSILFVPSDAEEPKVGDELV 327 >gi|262201693|ref|YP_003272901.1| alanine racemase domain-containing protein [Gordonia bronchialis DSM 43247] gi|262085040|gb|ACY21008.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247] Length = 360 Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 12/86 (13%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +D L+ N + + +A K C +IA G V +V Sbjct: 10 LVVDDERLEANLARVADRARDAGVLVRPHAKT----HKCVEIARRQIAHGAAGLTVATVG 65 Query: 67 EGV------KLRLYTPQARIFVLYGI 86 E ++R ++V + Sbjct: 66 EAEVFAAVDEVREIFIAYPLWVTPAM 91 >gi|161612907|ref|YP_001586872.1| hypothetical protein SPAB_00613 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362271|gb|ABX66039.1| hypothetical protein SPAB_00613 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 367 Score = 43.9 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPAVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|229002622|ref|ZP_04160659.1| Alanine racemase domain protein [Bacillus mycoides Rock3-17] gi|229008034|ref|ZP_04165588.1| Alanine racemase domain protein [Bacillus mycoides Rock1-4] gi|228753216|gb|EEM02700.1| Alanine racemase domain protein [Bacillus mycoides Rock1-4] gi|228758502|gb|EEM07643.1| Alanine racemase domain protein [Bacillus mycoides Rock3-17] Length = 361 Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 111/343 (32%), Gaps = 31/343 (9%) Query: 11 IDLTALKNNWHSMNALSGNART--AAVVKDNAYGLG---CEKIAPALYNAGVQDFFVTSV 65 I+L+ LK+N + L +A V K G ++ L AG F + + Sbjct: 3 INLSKLKHNAIMIKRLCEHANVSCFPVTK------GVSAATEVIEILKEAGFTKFADSRL 56 Query: 66 EEGVKLRLYTPQARIFVLYGIHP-GQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSHP 123 + K+R + +L + + T I + S + + + + G H Sbjct: 57 QHLHKIRKMMGNSVELLLIRTPALSEVEETVLTADISLNSELCVIEALGRAATKYGKIHR 116 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLERF 182 L +D G R G+ Q+ ++ + + +L I ++ C + + + ++L + Sbjct: 117 VILMIDLGDLREGMLPQQMVEVSQRVVGIQGIELVGIGANFTCFSGVIPTESSLLELTQL 176 Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARI 242 L+ G S+ S P Q G + + Sbjct: 177 TELVEEKIGQPLSIISGGNSSSLP-LILQRKEIGRVNSLRIGEAIFLGKETAYGKNIPFM 235 Query: 243 ILIRKALAGELVSYGGQKKLTR----DSLIAVAAIGYADGYPL----TLSGLDSEHSPSV 294 + E++ + + R + G L + D + S Sbjct: 236 YQDIFLVEAEIIEVKRKPSMPRGVIGKNAFGQVPCFEEKGERLRAIVAIGRQDLDISGLY 295 Query: 295 FLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 L G I G G + D + DITDS + VGD I Sbjct: 296 PLDGHIEILG------G--SSDHLIVDITDSKTYRVGDIITFL 330 >gi|241766468|ref|ZP_04764338.1| alanine racemase domain-containing protein [Acidovorax delafieldii 2AN] gi|241363320|gb|EER58850.1| alanine racemase domain-containing protein [Acidovorax delafieldii 2AN] Length = 85 Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 18/73 (24%) Query: 7 LRLKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 L +DL A++ N M + +A+ +IA L AG Sbjct: 22 PSLVVDLDAMERNIQRMADFARKHRVRWRPHAKM----------HKSAEIALLLQQAGAT 71 Query: 59 DFFVTSVEEGVKL 71 V V E L Sbjct: 72 GACVQKVAEAEAL 84 >gi|317127511|ref|YP_004093793.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472459|gb|ADU29062.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 367 Score = 43.9 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 11/166 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN-ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +D L N M +S + K IA G V + E Sbjct: 12 LILDEKKLNKNIDRMMKVSEHGVTIRPHFKT----HKSVWIAKRQIEKGASGITVATASE 67 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL----IPVISSVPQLTFYSKLMSCGVSHP 123 L + P + K + + I + S Q+ + + P Sbjct: 68 AELLFENGLTDILLAFPLADPVRLKKLLKWSKRARLILTVDSEEQVKIIEAIAKELIVTP 127 Query: 124 Y-ALQVDTGFNRLGLSLQ-EALDFTHNSFNKKLGQLSLIISHLACA 167 ++V++G NR G+ EA + N + L+ + +H + Sbjct: 128 EVWIKVNSGLNRCGVEPGVEAFNLAECINNTETLDLTGMYTHAGHS 173 >gi|90577958|ref|ZP_01233769.1| threonine aldolase, low-specificity [Vibrio angustum S14] gi|90441044|gb|EAS66224.1| threonine aldolase, low-specificity [Vibrio angustum S14] Length = 368 Score = 43.9 bits (102), Expect = 0.042, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 8/119 (6%) Query: 1 MHSNEFLR--LKIDLTALKNNWHSMNALSGNART--AAVVKDNAYGLGCEKIAPALYNAG 56 M+ + L +D +KNN H M + K IA +AG Sbjct: 1 MNIAQLPTPALIVDFDKMKNNIHEMQQRIDALQLNLRPHTKA----HKSPTIAKMQIDAG 56 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 Q + E + + + + + Q+ + + Sbjct: 57 AQGICTAKLGEAEVMAAGGINDILITTPIAGKNKIQRLVKLYQQYPDYRFIQVIDHKQH 115 >gi|154251070|ref|YP_001411894.1| alanine racemase domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155020|gb|ABS62237.1| alanine racemase domain protein [Parvibaculum lavamentivorans DS-1] Length = 381 Score = 43.9 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 18/77 (23%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +DL A + N M +A+T C IA A AG Sbjct: 27 LVLDLDAFERNVARMAEHCKVSNLSIRPHAKT----------HKCVTIAKAQIAAGAVGQ 76 Query: 61 FVTSVEEGVKLRLYTPQ 77 + E + + Sbjct: 77 CCAKLGEAEAMAAGGIE 93 >gi|330971195|gb|EGH71261.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 371 Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 91/336 (27%), Gaps = 18/336 (5%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +D + N + A+ K N + AL G+ F V S+ E Sbjct: 18 TVDPRWITQNAQQFSGGFPGTVLYAM-KANP----LVHVLEALSQGGINHFDVASLAE-- 70 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 ++ V Y ++P + + L +L P Sbjct: 71 -VQTVHNTLPNAVQYLMNPVKSRHCLHEAYYRHGVRSFVLDSEEELSKLRDVLPERDSTI 129 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERFRTLI 186 + F R S A+ F + ++ +A + D S S Q + Sbjct: 130 SMFVRYAPSESTAVYDLRGKFGASPALATQLVHQVAASTDWSLGLSFHVGSQAIEDGPWL 189 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +A + ++ + + ++ G T + + + L Sbjct: 190 AALDDADAIVRDTAQHVRHLDIGGGFPGNYLNSMGNTPDLVGRVCEHIQTSPTLK-DLNL 248 Query: 247 KALAGELVSYG----GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 AG + YG + L+R G G L Sbjct: 249 ICEAGRGLVYGGMSLFARVLSRREHSVFCGAGIFGGLLSAQQWLQFPARVWRDAAPYSGS 308 Query: 303 KGYMVPILGKIT--MDMTMFDITDSLSIEVGDYIQI 336 I G MD F T + I GD+++ Sbjct: 309 AETTFNIFGPTCDSMDRLAFPYTLASDIREGDWLEF 344 >gi|170744100|ref|YP_001772755.1| alanine racemase domain-containing protein [Methylobacterium sp. 4-46] gi|168198374|gb|ACA20321.1| alanine racemase domain protein [Methylobacterium sp. 4-46] Length = 359 Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 12/148 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL ++ N + A A A +K +A AG + ++ E Sbjct: 19 IDLDRVERNIARLQAACDAAGLANRPHIKT----HKSPVLARMQREAGARGLTCQTLGEA 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQE-----KIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + + P + + + + G Sbjct: 75 EVMAEAGLDDILISYNLVGPEKLGRLARLLRRTALTVSADHPAVVAGLGEAAAAAGRPLA 134 Query: 124 YALQVDTGFNRLGL-SLQEALDFTHNSF 150 ++ DTG R G+ +EA+ Sbjct: 135 VMVECDTGRARAGVARPEEAVALARQIA 162 >gi|197251372|ref|YP_002147319.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215075|gb|ACH52472.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 367 Score = 43.9 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N AL S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARMEKALLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|256752935|ref|ZP_05493765.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748180|gb|EEU61254.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 167 Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 14/167 (8%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 + L+I+L L+ N ++ L N + V K ++A + GV+ Sbjct: 2 YPLLRINLVKLRENTQTIVNLCEKKNIKVVGVTKVFCA------IPEVAQTMVKGGVEIL 55 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 + ++ KL +L + + + I + S + + + Sbjct: 56 GDSRIKNLKKL--QHIPVPKMLLRIPMKSEVEEVIKYADISLNSEIDTIKSLSEEAKKQR 113 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 H L VD G R G+ ++ + + +L I ++L C Sbjct: 114 KIHEIILMVDLGDLREGVLKEDVIPIVEQIVKLEGIRLRGIGTNLTC 160 >gi|269140447|ref|YP_003297148.1| hypothetical protein ETAE_3106 [Edwardsiella tarda EIB202] gi|267986108|gb|ACY85937.1| hypothetical protein ETAE_3106 [Edwardsiella tarda EIB202] gi|304560239|gb|ADM42903.1| Putative cytoplasmic protein [Edwardsiella tarda FL6-60] Length = 367 Score = 43.5 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+IDL L++N + L G AV K GC + A A+ G++ + Sbjct: 3 MPTLEIDLRKLRDNARTEVTLLGEQGIEVMAVNKVFD---GCPETARAVVEGGIRVVAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E+++ ++ ++ + H Sbjct: 60 RTYNLKKIRATGCT-TCLLRSPCLSEIEEVVRYADISLNSEPAVLRALSAEALRQDKVHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ + Sbjct: 119 VLLMVDMGDLREGIWFEHYAQIL 141 >gi|317401723|gb|EFV82343.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans C54] Length = 379 Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 6/73 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL A + N +M A + A K C +IA G + Sbjct: 27 PSLVLDLAAFEANLRAMQAWADRHEVALRPHAKA----HKCPEIARRQLALGARGICCQK 82 Query: 65 VEEGVKLRLYTPQ 77 V E V Sbjct: 83 VSEAVPFVAAGIT 95 >gi|85715888|ref|ZP_01046866.1| Orn/DAP/Arg decarboxylase 2 [Nitrobacter sp. Nb-311A] gi|85697295|gb|EAQ35175.1| Orn/DAP/Arg decarboxylase 2 [Nitrobacter sp. Nb-311A] Length = 380 Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N ++ L + G F +V E Sbjct: 23 LVVDLDIVRDNYQTFAKALPDSRVFYAVKANP----APEVLSLLASLG-SCFDTATVAE 76 >gi|217076401|ref|YP_002334117.1| amino acid racemase [Thermosipho africanus TCF52B] gi|217036254|gb|ACJ74776.1| amino acid racemase [Thermosipho africanus TCF52B] Length = 358 Score = 43.5 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 10/156 (6%) Query: 5 EFLRLKIDLTALKNN----WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 +F +L ++L ++ N +++ L N AV K LG IA L +AGV Sbjct: 2 DFPKLFVNLKKIRENAEKLLETLSKL--NIELVAVTKLT---LGDPIIAKTLKDAGVIKL 56 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-SKLMSCG 119 + ++ ++ +L P + + +IS Sbjct: 57 GESRLKNIKRMIENNVPGPFQLLRIPMPSELEDAVLLTDEILISEEKVAYMIDEIAKKYD 116 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLG 155 + +D G R G+ ++A K Sbjct: 117 KNIELIYMIDVGDLREGIWYEKAAYTIEKVAKKLKM 152 >gi|50059365|gb|AAT69406.1| alanine racemase [Borrelia burgdorferi] Length = 61 Score = 43.5 bits (101), Expect = 0.053, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 12/31 (38%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKIAPALY 53 + G A +K +AYG G I L Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINIFKFLK 57 >gi|307686808|ref|ZP_07629254.1| alanine racemase [Clostridium cellulovorans 743B] Length = 94 Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 2/92 (2%) Query: 45 CEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104 IA L N V + E + LR + I ++ I P Q I ++ P++ Sbjct: 1 MIPIANELINYNSDALGVVRLSEALTLRKAGIKIPIMIISPIMPSQTSWIITHDITPMVD 60 Query: 105 SVPQLTFYSKLMSCGVSHP--YALQVDTGFNR 134 + + K + D NR Sbjct: 61 NEEIIKALDKCAAEKNEIVSLKGFPGDIFMNR 92 >gi|154246083|ref|YP_001417041.1| Orn/DAP/Arg decarboxylase 2 [Xanthobacter autotrophicus Py2] gi|154160168|gb|ABS67384.1| Orn/DAP/Arg decarboxylase 2 [Xanthobacter autotrophicus Py2] Length = 376 Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 39/147 (26%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDN----------------------------A 40 + +DL ++ N+ + + R VK N A Sbjct: 19 VVVDLDVVRTNYQAFARALPDTRVYYAVKANPDAAILQALEELGSSFDCASVGEIEMVLA 78 Query: 41 YGLGCEKIA-----------PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89 G G E+I+ + GV+ F V S EE K+ P A++F Sbjct: 79 TGAGAERISFGNTIKKERDIERAFRLGVRLFAVDSYEEAEKIARVAPHAKVFCRILCDGA 138 Query: 90 QEKIIFDTNLIPVISSVPQLTFYSKLM 116 + + ++ + Sbjct: 139 GAEWPLSRKFGCEPEMAADVLEHAHRL 165 >gi|254472752|ref|ZP_05086151.1| alanine racemase domain protein [Pseudovibrio sp. JE062] gi|211958216|gb|EEA93417.1| alanine racemase domain protein [Pseudovibrio sp. JE062] Length = 383 Score = 43.5 bits (101), Expect = 0.057, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 21/97 (21%), Gaps = 19/97 (19%) Query: 9 LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAG-VQD 59 L +DL A +N M + + +IA G Sbjct: 30 LIVDLDAFDHNLFKMRDEIARYGVRHRAHCKM----------HKSAEIAKLQMEQGHACG 79 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96 V E L + P + + Sbjct: 80 VCCQKVSEAEALARAGITDIMVSNEVCDPYKIDRLAQ 116 >gi|158422357|ref|YP_001523649.1| putative amino acid aldolase [Azorhizobium caulinodans ORS 571] gi|158329246|dbj|BAF86731.1| putative amino acid aldolase [Azorhizobium caulinodans ORS 571] Length = 369 Score = 43.5 bits (101), Expect = 0.057, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 6/82 (7%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL A + N +M AL A+ A K IA G V V Sbjct: 21 LILDLDAFEANLDTMAALLKPTGAKLRAHAKT----HKSAVIARLQMQRGAVGQCVQKVG 76 Query: 67 EGVKLRLYTPQARIFVLYGIHP 88 E L + + P Sbjct: 77 EAEALAQAGINDILVSNEVVEP 98 >gi|317050118|ref|YP_004117766.1| alanine racemase domain-containing protein [Pantoea sp. At-9b] gi|316951735|gb|ADU71210.1| alanine racemase domain protein [Pantoea sp. At-9b] Length = 381 Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L+ID L+ N M + A A +K IA G + V+ Sbjct: 23 LEIDAARLQRNLQQMQQKADAAGVALRPHIKT----HKSVWIAQQQRALGARGVTVSKPS 78 Query: 67 EGVK 70 EGV Sbjct: 79 EGVA 82 >gi|92118880|ref|YP_578609.1| ornithine decarboxylase [Nitrobacter hamburgensis X14] gi|91801774|gb|ABE64149.1| ornithine decarboxylase [Nitrobacter hamburgensis X14] Length = 380 Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++R VK N ++ L + G F +V E Sbjct: 23 LVVDLDVVRDNYQTFAKALPDSRVFYAVKANP----APEVLSLLASLG-SCFDTATVAE- 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98 +++ L V +G +E+ I Sbjct: 77 IEMALAAGATPDRVSFGNTIKKERDIARAY 106 >gi|308188666|ref|YP_003932797.1| hypothetical protein Pvag_3206 [Pantoea vagans C9-1] gi|308059176|gb|ADO11348.1| Uncharacterized protein [Pantoea vagans C9-1] Length = 393 Score = 43.1 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 6/82 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +++D L+ N M + A +K IA G Q V+ Sbjct: 35 IEVDAERLEQNLQHMQRKASATGVALRPHIKT----HKSVWIAQRQLEYGAQGVTVSKPS 90 Query: 67 EGVKLRLYTPQARIFVLYGIHP 88 EG+ + + + P Sbjct: 91 EGISFIQGGVRDLLLAYPVVQP 112 >gi|103488650|ref|YP_618211.1| threonine aldolase family protein [Sphingopyxis alaskensis RB2256] gi|98978727|gb|ABF54878.1| threonine aldolase family protein [Sphingopyxis alaskensis RB2256] Length = 381 Score = 43.1 bits (100), Expect = 0.067, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 6/72 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +D AL N M AL+ A A K IA +AG + Sbjct: 26 LILDREALDRNIARMAALTKAAGVALRPHAKT----HKSVDIARRQLDAGAVGVCCAKIG 81 Query: 67 EGVKLRLYTPQA 78 E L Sbjct: 82 EAEILADGGITG 93 >gi|94985418|ref|YP_604782.1| carboxynorspermidine decarboxylase [Deinococcus geothermalis DSM 11300] gi|94555699|gb|ABF45613.1| carboxynorspermidine decarboxylase [Deinococcus geothermalis DSM 11300] Length = 408 Score = 43.1 bits (100), Expect = 0.069, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 6/124 (4%) Query: 12 DLTALKNNWHSMN--ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D + L+ N ++ + A+ K A + P L G+ +S+ E + Sbjct: 30 DESRLRRNLALISAVQRASGAQIIVAFKGFA----MWSVFPLLREYGITGATASSLNEAI 85 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 R I D V +S Q + + + AL V Sbjct: 86 LAREELQGEVHVYAPAYSEEDFPRILDLADHIVFNSFAQWERFRPQVEAARAAGKALHVG 145 Query: 130 TGFN 133 N Sbjct: 146 LRIN 149 >gi|269837824|ref|YP_003320052.1| alanine racemase domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787087|gb|ACZ39230.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM 20745] Length = 370 Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 18/88 (20%) Query: 9 LKIDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L ID A++ N M L +A+T IA AG Sbjct: 21 LVIDADAMERNIARMAAFFAERPAKLRPHAKT----------HKSPIIAHKQLEAGAVGI 70 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHP 88 + E L + + + P Sbjct: 71 TCAKLGEAEALVEGGIKDILIANQIVGP 98 >gi|225012998|ref|ZP_03703415.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A] gi|225002897|gb|EEG40876.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A] Length = 369 Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 12/146 (8%) Query: 16 LKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74 +K N +M +++G R +K ++ + G++ F ++ E L Sbjct: 27 VKKNISAMISIAGGTERLWPHIKT----HKMGEVVKLQMDQGIKRFKCATLGEVELLISC 82 Query: 75 TPQARIFVLYGIHPGQEKI---IFDTNLIPVISSVPQLTFYSKLM----SCGVSHPYALQ 127 + H I + V + Sbjct: 83 NVSHILLAHQPTHEKVMYFLSLQAKNPNIRFSTLVDNYDSLELYSDLATQENQKLSLWID 142 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKK 153 ++ G NR G+ + AL K Sbjct: 143 INNGMNRTGILPELALSLYQRLIKKN 168 >gi|168237383|ref|ZP_02662441.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736497|ref|YP_002115429.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711999|gb|ACF91220.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289614|gb|EDY28977.1| amino acid racemase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 367 Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 6/143 (4%) Query: 6 FLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I+L L+ N + L S AV K GC + A A++N G+ + Sbjct: 3 MPVLEINLRKLEENARTEKTLLASSGIDVMAVNKVFD---GCVETAQAVFNGGITVIAES 59 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 K+R + E ++ ++ V + G +H Sbjct: 60 RTYNLKKIRETGCT-TCLLRSPCLSEIEDVVRYADISLNSEPVVLRALSQEAQRQGKTHQ 118 Query: 124 YALQVDTGFNRLGLSLQEALDFT 146 L VD G R G+ E Sbjct: 119 VLLMVDMGDLREGIWFGEYQRIL 141 >gi|75675117|ref|YP_317538.1| Orn/DAP/Arg decarboxylase 2 [Nitrobacter winogradskyi Nb-255] gi|74419987|gb|ABA04186.1| ornithine decarboxylase [Nitrobacter winogradskyi Nb-255] Length = 380 Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N ++ L + G F +V E Sbjct: 23 LVVDLDIVRDNYQAFAKALPDSRVFYAVKANP----APEVLSLLASLG-SCFDTATVAE 76 >gi|300703088|ref|YP_003744690.1| hypothetical protein RCFBP_10743 [Ralstonia solanacearum CFBP2957] gi|299070751|emb|CBJ42046.1| conserved protein of unknown function, Alanine racemase domain protein [Ralstonia solanacearum CFBP2957] Length = 376 Score = 43.1 bits (100), Expect = 0.075, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 13/185 (7%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 MH ID+ + N M + R VK CE + A +AG Sbjct: 1 MHLPALNTPAALIDVARMTGNIARMQQRLDALGVRFRPHVKT----TKCEPVVRAQLDAG 56 Query: 57 VQDFFVTSVEEGVK-----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111 Q V++++E + LR + + I S Sbjct: 57 AQGITVSTLKEAEQFFAAGLRDIVYAVGMAPTRLPQALALRRRGCDLKIVADSVACAQAI 116 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 + + G + ++VD +R G+ + + G + A + Sbjct: 117 AAFGNTHGEAFEVWIEVDVDGHRSGIVPDDDRLIAVGRVLAEGGMRLGGVLAHAGSSYEY 176 Query: 172 SHVNS 176 ++ Sbjct: 177 HAHDA 181 >gi|319761308|ref|YP_004125245.1| alanine racemase domain protein [Alicycliphilus denitrificans BC] gi|330823182|ref|YP_004386485.1| alanine racemase domain-containing protein [Alicycliphilus denitrificans K601] gi|317115869|gb|ADU98357.1| alanine racemase domain protein [Alicycliphilus denitrificans BC] gi|329308554|gb|AEB82969.1| alanine racemase domain protein [Alicycliphilus denitrificans K601] Length = 387 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 18/89 (20%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 IDL A++ N M A + +A+ IA L AG Sbjct: 22 AVIDLDAMERNIQRMAAFARQNQVRWRPHAKM----------HKSAAIALLLEQAGACGH 71 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPG 89 V E L + I P Sbjct: 72 CVQKTSEAEALAAGGVRDLFISNEVIAPA 100 >gi|148360017|ref|YP_001251224.1| metal-activated pyridoxal enzyme [Legionella pneumophila str. Corby] gi|296108162|ref|YP_003619863.1| metal-activated pyridoxal enzyme [Legionella pneumophila 2300/99 Alcoy] gi|148281790|gb|ABQ55878.1| metal-activated pyridoxal enzyme [Legionella pneumophila str. Corby] gi|295650064|gb|ADG25911.1| metal-activated pyridoxal enzyme [Legionella pneumophila 2300/99 Alcoy] Length = 397 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 54/195 (27%), Gaps = 27/195 (13%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L ID LK+N M + + +T C +IA G Sbjct: 39 LVIDYEKLKHNLEIMQQHGFTWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 88 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSC 118 + E L + + + +F+ V L Sbjct: 89 SAAKLSEAAALVSKRITNVLITSLIVSEAKYSRLFNCLKSAPDLMLVVDDKDNIRMLNKL 148 Query: 119 GVSHPYALQ----VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G S + +D+G R G++ + AL++ H +L I A Sbjct: 149 GKSLNQPVHVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGIQC---YAGHLQHIQ 205 Query: 175 NSVQLERFRTLISHY 189 N + + F + Sbjct: 206 NYEERKAFSLQVMEM 220 >gi|172062516|ref|YP_001810167.1| alanine racemase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171995033|gb|ACB65951.1| alanine racemase domain protein [Burkholderia ambifaria MC40-6] Length = 376 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 11/173 (6%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++NN M A + + VK C+++ A AG Q V++++E Sbjct: 13 IDVDRMRNNIARMQAHLDALGVKFRPHVKT----TKCQQVVDAQIAAGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + I + I S + G Sbjct: 69 EQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIVADSLQTANSIAEFGREHGERFD 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R G+ + L G + A + ++ Sbjct: 129 VWIEVDVDGHRSGIRPDDGLLIDVGRALVDGGMALGGVLAHAGSSYEYDTHDA 181 >gi|319893129|ref|YP_004150004.1| hypothetical protein SPSINT_1840 [Staphylococcus pseudintermedius HKU10-03] gi|317162825|gb|ADV06368.1| Hypothetical protein SPSINT_1840 [Staphylococcus pseudintermedius HKU10-03] Length = 358 Score = 42.7 bits (99), Expect = 0.092, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 7/164 (4%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ I+L+ +K N + + R V K G K+ G + Sbjct: 1 MPQIHINLSKIKYNAMVLQHMLAEQGIRMIPVTKCMG---GDPKVRQQFREMGFNTLAES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 + + P ++ G P + + + I + + + + S GV H Sbjct: 58 RLT-AMMTNEQHPTEHDMMIKGALPNEIHDVVRYSQISIQTELETIRALSDEAVAQGVKH 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 L VD R G E + K L + + C Sbjct: 117 HIYLMVDWKDGREGALTYEVVPLIKEIIRLKGVYLKGLSFNFMC 160 >gi|270159139|ref|ZP_06187795.1| putative metal-activated pyridoxal enzyme [Legionella longbeachae D-4968] gi|289166027|ref|YP_003456165.1| alanine racemase [Legionella longbeachae NSW150] gi|269987478|gb|EEZ93733.1| putative metal-activated pyridoxal enzyme [Legionella longbeachae D-4968] gi|288859200|emb|CBJ13132.1| putative alanine racemase [Legionella longbeachae NSW150] Length = 374 Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 45/178 (25%), Gaps = 26/178 (14%) Query: 1 MHSNEF--LRLKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAP 50 M E L ID LK N M + + +T C K+A Sbjct: 8 MKKTELDTPCLVIDKNILKTNLEKMKKHGIENEINIKPHCKT----------HKCSKLAG 57 Query: 51 ALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDT------NLIPVIS 104 G V + E L + I + + ++ V S Sbjct: 58 LQIEYGAIGVCVAKISEAEVLIKEEIPNILITSPVITKNKISRLIACLEKAPSTMVVVDS 117 Query: 105 SVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162 L L +D G R G+ + AL+F L + Sbjct: 118 KENILALNEAGARHNKRIHVLLDIDPGIGRTGIKPEHALNFARELQRLPWLHLMGVQC 175 >gi|302185892|ref|ZP_07262565.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 [Pseudomonas syringae pv. syringae 642] Length = 371 Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 93/337 (27%), Gaps = 20/337 (5%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +D + N + A+ K N ++ AL G+ F V S+ E Sbjct: 18 TVDTHWITRNAQQFSGCFPGTVLYAM-KANP----LPQVLEALSQGGINHFDVASLAE-- 70 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 ++ V Y ++P + + L +L+ P Sbjct: 71 -VQTVHNTLPNAVQYLMNPVKSRHCLHEAYYRYGVRSFVLDSEEELLKLRDVLPERDSTI 129 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERFRTLI 186 + F R S A+ F + ++ +A + D S S Q + Sbjct: 130 SLFVRYAPSESTAVYDLRGKFGASPALATQLVHQVASSTDWSLGLSFHVGSQAIEEGPWL 189 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +A + ++ + + PG L + + + + + + Sbjct: 190 AALDDADAIVRDTAQHVRHLDIGGGF--PGNYLNSMGNTTDLVGRVCEHIQTSPTLKDLN 247 Query: 247 KALA-GELVSYG----GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 G + YG + L+R G G L Sbjct: 248 LICEAGRGLVYGGMSLFARVLSRREHSVFCGAGIFGGLLSAQQWLQFPARVWRDAAPYTG 307 Query: 302 IKGYMVPILGKIT--MDMTMFDITDSLSIEVGDYIQI 336 I G MD F T + I GD+++ Sbjct: 308 AAENTFNIFGPTCDSMDRLAFPYTLASDIREGDWLEF 344 >gi|121592921|ref|YP_984817.1| alanine racemase domain-containing protein [Acidovorax sp. JS42] gi|120605001|gb|ABM40741.1| alanine racemase domain protein [Acidovorax sp. JS42] Length = 393 Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 18/75 (24%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +DL A++ N M + +A+ +IA L +G + Sbjct: 28 LVVDLDAMERNIQRMAEFAHKHQVRWRPHAKM----------HKSAEIALQLEWSGARGH 77 Query: 61 FVTSVEEGVKLRLYT 75 V V E L Sbjct: 78 CVQKVSEAEALAAGG 92 >gi|312132077|ref|YP_003999417.1| alanine racemase domain protein [Leadbetterella byssophila DSM 17132] gi|311908623|gb|ADQ19064.1| alanine racemase domain protein [Leadbetterella byssophila DSM 17132] Length = 355 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 15/236 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 M + L I ++ N M L G A+ VK + + + + G+Q F Sbjct: 8 MKRFDTPSLLILRDKVEANIDKMIQL-GGAKLMPHVKT----HKMDVVTQLMIDKGIQRF 62 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVP-----QLTFYSKL 115 +++ E + +A +L GQ+ I F + + ++ Sbjct: 63 KASTLAELEMV--ARCRASEVLLAHQIMGQKLIWFQKLKDQYPHTKMCLLVDCMEVAEEI 120 Query: 116 MSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS--HLACADDPSSH 173 + V+ G NR G+ E L K + D + Sbjct: 121 QRELKEVDVYIDVNVGMNRTGIQPGEGLKELIAYVKKCSNMKLKGLHVYDGHITDVGLNE 180 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILL-GPNYHFQLTRPGISLYGGTDKINK 228 + F L + +A S + PG S++ K Sbjct: 181 REQRVADCFEGLQEYMDPHWEMIAGGSPAFSVHRKSPDRTLSPGTSVFWDWGYGEK 236 >gi|217979517|ref|YP_002363664.1| alanine racemase domain protein [Methylocella silvestris BL2] gi|217504893|gb|ACK52302.1| alanine racemase domain protein [Methylocella silvestris BL2] Length = 383 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 11/137 (8%) Query: 7 LRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL N M A+ + K +IA A AG + Sbjct: 29 PSLILDLDVFDANVARMQAICDANGVNLRPHAKS----HKSSRIAQAQREAGAIGVCCAT 84 Query: 65 VEEGVKLRLYT-----PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 + E + + A + I + + + VI + S + Sbjct: 85 INEAEAMAVAGVGGLLITAPLVTDVKISRLCDLCARAPDTMAVIDNADNALALSAAFAGR 144 Query: 120 VSHPYALQVDTGFNRLG 136 + + +D G +R G Sbjct: 145 PALNVLVDLDIGHHRTG 161 >gi|254503042|ref|ZP_05115193.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein [Labrenzia alexandrii DFL-11] gi|222439113|gb|EEE45792.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein [Labrenzia alexandrii DFL-11] Length = 406 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 16 LKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYT 75 L+ + + L AV K N G + L AG F V S E +R + Sbjct: 28 LRADAQNFKKLFPGKTAYAV-KTN----GEPFVLKELAAAGYDCFDVASPAEFAAVREAS 82 Query: 76 PQARIFVLYG 85 P+A + ++ Sbjct: 83 PKAEMLYMHP 92 >gi|33591729|ref|NP_879373.1| putative metal-activated pyridoxal enzyme [Bordetella pertussis Tohama I] gi|33571372|emb|CAE44851.1| putative metal-activated pyridoxal enzyme [Bordetella pertussis Tohama I] gi|332381147|gb|AEE65994.1| putative metal-activated pyridoxal enzyme [Bordetella pertussis CS] Length = 381 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 11/172 (6%) Query: 9 LKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 +D+ +++N M VK C +A A AG V++++ Sbjct: 17 AIVDVARMQHNIARMQDRMNGLGVSLRPHVKT----SKCTPVALAQLAAGAHGVTVSTLK 72 Query: 67 EGVKLRLYTPQARIF---VLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMSCGVS 121 E + ++ + P + I ++ + Sbjct: 73 EAEQFFAAGITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEV 132 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 +++DT +R G+ +EA + + G + A + Sbjct: 133 FEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDT 184 >gi|134100867|ref|YP_001106528.1| ornithine decarboxylase [Saccharopolyspora erythraea NRRL 2338] gi|291003519|ref|ZP_06561492.1| ornithine decarboxylase [Saccharopolyspora erythraea NRRL 2338] gi|133913490|emb|CAM03603.1| ornithine decarboxylase [Saccharopolyspora erythraea NRRL 2338] Length = 407 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H L +DL + + + + L A VK N ++ L G F Sbjct: 29 HRPPTPCLVVDLPTIAHRYRRLRGLFPRAVVHYAVKANP----APEVVSLLAGLGAS-FD 83 Query: 62 VTSVEEG-VKLRL 73 V S E + LR Sbjct: 84 VASPAEAELCLRA 96 >gi|13472621|ref|NP_104188.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099] gi|14023367|dbj|BAB49974.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099] Length = 377 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + +++ VK N +I L G F SV E Sbjct: 20 LVVDLDVVRDNFRAFEKALPDSKIYYAVKANP----APEILRLLAAMG-SSFDTASVAE 73 >gi|326800274|ref|YP_004318093.1| alanine racemase domain protein [Sphingobacterium sp. 21] gi|326551038|gb|ADZ79423.1| alanine racemase domain protein [Sphingobacterium sp. 21] Length = 374 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 20/185 (10%) Query: 16 LKNNWHSMNALSGNA-RTAAVVK----DNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +KNN + ++ + + +K +A L AG+ F ++ E Sbjct: 29 VKNNIQLLMSMVKSVDKLRPHIKTSKSADA--------IQLLQLAGINKFKCATIAEAEL 80 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-------SHP 123 L Q + + P + I P S + + + Sbjct: 81 LGDCGVQDVLLAYQPVGPNINRFIALVKRFPNTSFACLIDQFDIASQLNQVAFAESFNLN 140 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 ++ G NR G+ + + L + + + S Q R+ Sbjct: 141 IYFDINVGMNRTGIKTDKVSALAEQCSSLSNLILLGLHCYDGHIHEASLEARQNQCHRYF 200 Query: 184 TLISH 188 T I Sbjct: 201 TEIEQ 205 >gi|120612870|ref|YP_972548.1| putative threonine aldolase [Acidovorax citrulli AAC00-1] gi|120591334|gb|ABM34774.1| putative threonine aldolase [Acidovorax citrulli AAC00-1] Length = 392 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 18/89 (20%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 +DL A++ N M + +A+ C ++A L AG Sbjct: 27 AVVDLDAMERNIQRMAEFARKHQVRWRPHAKM----------HKCAELALRLQQAGAGGA 76 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPG 89 V V E L I P Sbjct: 77 CVQKVSEAEALAAGGVTDIYISNEVIAPA 105 >gi|319899290|ref|YP_004159385.1| lysine/ornithine decarboxylase [Bartonella clarridgeiae 73] gi|319403256|emb|CBI76815.1| lysine/ornithine decarboxylase [Bartonella clarridgeiae 73] Length = 453 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 42/163 (25%), Gaps = 5/163 (3%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL + N+ + +R +K N +I L + G F Sbjct: 89 HRSEGPCLVVDLDVVHENYLNFKKALPQSRIFYAIKANP----APEILRLLVSLG-SSFD 143 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 S+ E A + I L + +V L K+ Sbjct: 144 AASIAEIEMALKAGATADRISFGNTIKKERDIARAHALGVSLYAVDCLEEVEKVACAAPG 203 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL 164 +V T L + L + Sbjct: 204 ARVFCRVLTDGEGAEWPLSQKFGCVPFMAVDVLRHAHQLGLQA 246 >gi|260576176|ref|ZP_05844169.1| alanine racemase domain protein [Rhodobacter sp. SW2] gi|259021656|gb|EEW24959.1| alanine racemase domain protein [Rhodobacter sp. SW2] Length = 372 Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYG---------LGCEKIAPALYNAGV 57 L +DL AL+ N SM + +A G +IA AG Sbjct: 24 PSLILDLDALEANIASMQSQ-----------ADAAGVRLRVHGKMHKSAEIAQMQIAAGA 72 Query: 58 QDFFVTSVEEGVK-----LRLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF 111 V E LR + + ++ L V Sbjct: 73 CGICCQKVSEAEAFARAGLRDILITNQVRGAVKTDRLARLPLLGARILTCVDDPANVAEL 132 Query: 112 YSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS 171 + G +++D G R G++ +A + + + ++ A + Sbjct: 133 SAAAQRHGTEIEVLVEIDCGAGRCGVAPDQAPGLAQAIVAAPGLRFAGLQAYQGSAQHQA 192 Query: 172 SHVNSV 177 V Sbjct: 193 DPVARR 198 >gi|320329052|gb|EFW85051.1| ornithine decarboxylase, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330885445|gb|EGH19594.1| ornithine decarboxylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 371 Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 97/344 (28%), Gaps = 34/344 (9%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +D + N + A+ K N E++ AL G+ F V S+ E Sbjct: 18 TVDPRWITRNAQQFSGCFPGTVLYAM-KANP----LEQVLEALSQGGINHFDVASLAEVQ 72 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 + P A +++ + + SKL + Sbjct: 73 TVHNTLPTAVQYLMNPVKSRHCLHEAYYRYGVRSFVLDSEEELSKLRDVLPERDSTI--- 129 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERFRTLI 186 + F R S A+ F + ++ +A + D S S Q + Sbjct: 130 SLFVRYAPSESTAVYDLRGKFGASPVLATQLVHQVASSTDWSLGLSFHVGSQAIEDGPWL 189 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +A + ++ + + ++ G T + + + L Sbjct: 190 AALNDADAIVRDTAEHVRHLDIGGGFPGNYLNSMGNTPDLVGRVCDHIQTSPTLK-DLNL 248 Query: 247 KALAGELVSYG----GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 AG + YG + L+R G G LS P + + Sbjct: 249 ICEAGRGLVYGGMSLFARVLSRREQSVFCGAGIFGGL---LSAQQWLQFP-----ARVWR 300 Query: 303 KGYMV--------PILGKIT--MDMTMFDITDSLSIEVGDYIQI 336 G I+G MD F + + I D+++ Sbjct: 301 DGTPYTGAAENTFNIVGPTCDSMDRLAFPYSLASDIRESDWLEF 344 >gi|168186352|ref|ZP_02620987.1| amino acid racemase [Clostridium botulinum C str. Eklund] gi|169295637|gb|EDS77770.1| amino acid racemase [Clostridium botulinum C str. Eklund] Length = 368 Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 105/352 (29%), Gaps = 32/352 (9%) Query: 5 EFLRLKIDLTALKNN----WHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + +L+I+ LK+N ++ + V K G + A A+ + G+ Sbjct: 2 SYPQLQINTKKLKHNAKVEVEALRRI--GVEVMGVNKVF---NGSVETAKAIVDGGMNVV 56 Query: 61 FVTSVEEGVKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SC 118 + ++ L+ + +L + + I + S + + SK Sbjct: 57 AESRID---NLKKIQVVKCEKALLRSPALSEIGDVVKYADISLNSEIEIIKELSKEAIKQ 113 Query: 119 GVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV- 174 H L +D G R G+ +E + ++ + ++ C + Sbjct: 114 NKVHKVLLMIDFGDIREGIWFENKEEIEEALSEIKLLPNIEIYGLGTNFNCYGTALPTIK 173 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILL--------GPNYHFQLTRPGISLYGGTDKI 226 N + + I+ S P L G+ +G Sbjct: 174 NGKMFVELARELENKLNIKFKYLSGGNCTSYHLVDKGIFPEGINHLRIGGLHQFGIEYVE 233 Query: 227 NKSHPMQTVVTAEARIILIR-KALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 K + L GE++ + + L A + + Sbjct: 234 GKYLDEYYHSQMSIDKYVSDLYILKGEIIELNTKPTVPVGELGVDAFLKTKEFEDRGNRR 293 Query: 286 LDSEHSPSVFLGGKGF--IKGYMVPILGKITMDMTMFDITDS-LSIEVGDYI 334 + + + G + ILG+ + D T+ D+ DS ++GD I Sbjct: 294 RALLAFGRQDIPEENIHPVDGNL-KILGQTS-DHTIIDVEDSEYDYKLGDTI 343 >gi|319794305|ref|YP_004155945.1| alanine racemase domain protein [Variovorax paradoxus EPS] gi|315596768|gb|ADU37834.1| alanine racemase domain protein [Variovorax paradoxus EPS] Length = 380 Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 6/90 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A+ N M A + VK +IA AG +V Sbjct: 26 LLIDLPAMTRNIERMAAFAKARGIGLRPHVKT----HKSIEIARRQVAAGAIGVSCVTVG 81 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96 E + ++ + + P + + Sbjct: 82 EAEIMVDGGIRSVLITSPAVTPSKIARLVK 111 >gi|296394573|ref|YP_003659457.1| Orn/DAP/Arg decarboxylase 2 [Segniliparus rotundus DSM 44985] gi|296181720|gb|ADG98626.1| Orn/DAP/Arg decarboxylase 2 [Segniliparus rotundus DSM 44985] Length = 421 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL ++ + + A AR VK N ++ L AG F V SV E Sbjct: 56 LVVDLETVRERYCQLTAALPKARVYYAVKANP----AAEVVRELAAAG-SCFDVASVAEI 110 Query: 69 VKLRLYTPQARIFVL 83 R Sbjct: 111 ELCLAAGANPRDLCY 125 >gi|220926980|ref|YP_002502282.1| alanine racemase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219951587|gb|ACL61979.1| alanine racemase domain protein [Methylobacterium nodulans ORS 2060] Length = 359 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 6/67 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL ++ N + A A A +K +A AG + ++ E Sbjct: 19 IDLDQVERNIARLQAACDAAGLANRPHIKT----HKSPVLARLQQEAGARGLTCQTLGEA 74 Query: 69 VKLRLYT 75 + Sbjct: 75 EVMAEAG 81 >gi|288818467|ref|YP_003432815.1| ornithine decarboxylase [Hydrogenobacter thermophilus TK-6] gi|288787867|dbj|BAI69614.1| ornithine decarboxylase [Hydrogenobacter thermophilus TK-6] gi|308752057|gb|ADO45540.1| Orn/DAP/Arg decarboxylase 2 [Hydrogenobacter thermophilus TK-6] Length = 390 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 99/348 (28%), Gaps = 42/348 (12%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL +K + + N R VK N + AL G F V S+EE K+ Sbjct: 45 DLEGIKRRYKEIELYMPNFRIYYAVKAN----DHTSVIKALSEKG-SGFEVASLEELKKV 99 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + + +E I + ++ +V T K+ +++ Sbjct: 100 LSLKVEPERIISSNPVKSEEFIDYAYSVHVNRFAVDSFTEVEKIAKVAKRARVYVRLVVP 159 Query: 132 FNRLGLS--------LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 + A+D + K L + + ++ + +++ Sbjct: 160 NEGSDWPLSKKFGVDVDTAIDILEYAREKGLVPYGITFHVGSQCNNYRNWFIAIRKSAEL 219 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARII 243 + +G + + G + Y ++ R Y + K P Sbjct: 220 WEKAKRRGFRLQMLNMGGGIPVK-YTYEALRIEDIAYYIKGLLQKFFPNP---------P 269 Query: 244 LIRKALAGELVSYGGQKKLTR--------DSLIAVAAIGYADGYPLTLSGLDSEHSPSVF 295 + G + +TR D G +G L G+ Sbjct: 270 HELQIEPGRGIVGDQGIMITRIIGKAKRNDENWLYVDTGVFNGLAEALGGIRYPFYIDRE 329 Query: 296 LGGKGF-IKGYMVPILGKITMDMT--MFDITDSLSIEVGDYIQIFGPD 340 K + I G +MD+ M + EVGD++ I Sbjct: 330 GELKEWTIGGVSCD-----SMDVIAKMVAL---PEPEVGDHLYILSAG 369 >gi|319792881|ref|YP_004154521.1| alanine racemase domain protein [Variovorax paradoxus EPS] gi|315595344|gb|ADU36410.1| alanine racemase domain protein [Variovorax paradoxus EPS] Length = 379 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 18/179 (10%) Query: 9 LKIDLTA-------LKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 ID A +++N M A + R VK C IA A +AG Q Sbjct: 7 ATIDTPAAIVERPRMQHNIARMQARMNALGVRFRPHVKT----SKCIDIARAQRDAGAQG 62 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSK 114 V++++E + + ++ + + + I Sbjct: 63 ITVSTLKEAEQFFVAGFTDILYAVGMAQHRLPHALELRRRGCALSIITDGVASARAIAEF 122 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + G + ++VDT +R G+ + + G + A + Sbjct: 123 GRANGEAFDVLIEVDTDGHRSGIRPDDDVLLEVAHVLHGGGMHLAGVMTHAGSSYDLDT 181 >gi|209884063|ref|YP_002287920.1| ornithine decarboxylase [Oligotropha carboxidovorans OM5] gi|209872259|gb|ACI92055.1| ornithine decarboxylase [Oligotropha carboxidovorans OM5] Length = 411 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N ++ L + G F +V E Sbjct: 54 LVVDLDVVRDNYQTFAKALPDSRVFYAVKANP----APEVLTLLASLG-SCFDTATVPE 107 >gi|326381918|ref|ZP_08203611.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL B-59395] gi|326199344|gb|EGD56525.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL B-59395] Length = 354 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 18/88 (20%) Query: 11 IDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +D+ L N +M L +A+T C +IA AG V Sbjct: 9 VDVDRLDRNLTAMADWAERHGIRLRPHAKT----------HKCAEIARRQLEAGAVGLSV 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQ 90 ++ E Sbjct: 59 ATIGEAEIFAELGVDDLFIAYPLWLSEN 86 >gi|158421957|ref|YP_001523249.1| ornithine decarboxylase [Azorhizobium caulinodans ORS 571] gi|158328846|dbj|BAF86331.1| ornithine decarboxylase [Azorhizobium caulinodans ORS 571] Length = 376 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + +DL ++ N+ + + R VK N I AL G F SV+E Sbjct: 19 VVVDLDVVRANYTAFARALPDTRVFYAVKANP----DAAILKALAELG-SCFDCASVQE 72 >gi|260460667|ref|ZP_05808918.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium opportunistum WSM2075] gi|259033772|gb|EEW35032.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium opportunistum WSM2075] Length = 377 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N +I L G F SV E Sbjct: 20 LVVDLDVVRDNFRAFEKALPDSRIYYAVKANP----APEILRLLAAMG-SSFDTASVAE 73 >gi|309388498|gb|ADO76378.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228] Length = 356 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 117/347 (33%), Gaps = 29/347 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 + +L I LT ++ N + + AVVK A G +I A A ++ Sbjct: 2 SYPKLDIYLTKIEANAQKLKKELKAKKIKLTAVVKGLA---GDVEIFKAYQKADIKSIAD 58 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS- 121 + ++ +K R Q I +L + + + ++S + SK Sbjct: 59 SRLKNIIKYRKAGYQGEILMLRIPMLSEIEKMIPYVDSVLVSEAKTASLISKFAVKQKKV 118 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC-ADDPSSHVNSVQLE 180 + VD G R G+ + L + L I ++L C A N+ +L Sbjct: 119 IDLIIMVDLGDRREGILAKNLLALAAKIKSLSAVNLKGIGTNLGCFAGIIPDDENTKKLI 178 Query: 181 RFRTLISHYKGIEASLASSSGI-----LLGPNYHFQLT--RPGISLYGGTDKINKSH--- 230 + + + + + S+ + P ++T R G + GTD IN+ Sbjct: 179 ALKKELENSLNFKLDILSAGNTATLKLIKEPELSSEITNLRIGEGILIGTDIINQDLLQD 238 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 +A I+ ++ + D + L Sbjct: 239 YNHYNFRLQAEIVELK--AKPSSPEGEIAFGGQGRGQL------IEDKGLRKRAILAVGK 290 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQI 336 + G KG V +LG + D + DITD+ +EVGD ++ Sbjct: 291 QDIDYQGLYPKQKG--VQVLGASS-DHLITDITDAELELEVGDILEF 334 >gi|282855759|ref|ZP_06265065.1| alanine racemase domain protein [Pyramidobacter piscolens W5455] gi|282586391|gb|EFB91653.1| alanine racemase domain protein [Pyramidobacter piscolens W5455] Length = 369 Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 18/85 (21%) Query: 7 LRLKIDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 L ID +++N M L + +T +A G + Sbjct: 9 PSLLIDREIMRDNMRFMLDYAARHGAKLRPHTKT----------HKMPAVARLQVEMGAR 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVL 83 V V E + Sbjct: 59 GIAVAKVGEAEAMAADGLDDIFIAN 83 >gi|319781640|ref|YP_004141116.1| ornithine decarboxylase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167528|gb|ADV11066.1| Ornithine decarboxylase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 377 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N +I L G F SV E Sbjct: 20 LVVDLDVVRDNFRAFEKALPDSRIYYAVKANP----APEILRLLAAMG-SSFDTASVAE 73 >gi|326318901|ref|YP_004236573.1| alanine racemase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375737|gb|ADX48006.1| alanine racemase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 393 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 18/96 (18%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 +DL A++ N M + +A+ C ++A L AG Sbjct: 27 AVVDLDAMERNIQRMADFARKHQVRWRPHAKM----------HKCAELALRLQQAGAGGA 76 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFD 96 V V E L I P + + + Sbjct: 77 CVQKVSEAEALAAGGVTDIYISNEVIAPAKLQRVAR 112 >gi|116691668|ref|YP_837201.1| alanine racemase domain-containing protein [Burkholderia cenocepacia HI2424] gi|116649668|gb|ABK10308.1| alanine racemase domain protein [Burkholderia cenocepacia HI2424] Length = 375 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 11/147 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 +H+ ID+ ++ N M + R VK C + A AG Q Sbjct: 3 LHTLNTPAALIDIDRMQRNIARMQTHLDALGVRFRPHVKT----TKCRHVVDAQIAAGAQ 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYS 113 V++++E + + + ++ + + + I S + Sbjct: 59 GITVSTLKEAEQFFAHGIRDIVYAVGMVPAKLGQALALRRQGCDLKIVADSLPAAHAIAA 118 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQ 140 G ++VD +R G+ Sbjct: 119 FGREHGERFDVWIEVDVDGHRSGIPPD 145 >gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c [Mycobacterium abscessus ATCC 19977] gi|169240313|emb|CAM61341.1| Conserved hypothetical protein (alanine racemase?) [Mycobacterium abscessus] Length = 360 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 10/138 (7%) Query: 11 IDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL + N + R K C +IA ++G V +V E Sbjct: 20 VDLAVMDRNIERLAGRLRGTGIRLRPHAKS----HKCIEIARRQIDSGAIGLTVATVGEA 75 Query: 69 VKLRLYTPQARIFVLYGIHPGQ----EKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 Q + + + V + Sbjct: 76 EVFAEAGFIDLFIAYPLWVTAQKARRLRQVASRAALRVAVDSAAGAQQLAEHLGDLPITV 135 Query: 125 ALQVDTGFNRLGLSLQEA 142 ++VD+G +R G++ +A Sbjct: 136 VIEVDSGHHRTGVAPDQA 153 >gi|320104390|ref|YP_004179981.1| alanine racemase domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751672|gb|ADV63432.1| alanine racemase domain protein [Isosphaera pallida ATCC 43644] Length = 390 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 16/140 (11%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 AL++N ++ L+G+A R VK + G+ V ++ E + Sbjct: 36 EALESNLATLIRLAGSAARLRPHVKT----HKMPNLVRRCEALGIHRHKVATIAEAEMVA 91 Query: 73 LYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-----------SVPQLTFYSKLMSCGVS 121 + + + P ++++ P + + + T Sbjct: 92 QAGGRDVLIAYPLVGPKLDRLMKLRAAYPETTFRVTLDHLRGLTDLEETVARHGGPHASP 151 Query: 122 HPYALQVDTGFNRLGLSLQE 141 P + ++ G NR G+ + Sbjct: 152 VPVLIDLNVGMNRTGIMPDD 171 >gi|238024453|ref|YP_002908685.1| hypothetical protein bglu_2g10490 [Burkholderia glumae BGR1] gi|237879118|gb|ACR31450.1| Hypothetical protein bglu_2g10490 [Burkholderia glumae BGR1] Length = 376 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 11/173 (6%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M + +K C + A AG + V++++E Sbjct: 13 IDVARMNRNIERMQQRMNALGVNFRPHIKT----SKCAPVVTAQLEAGARGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + + + I S + G S Sbjct: 69 EQFFALGVRDIVYAVGIAPAKLAQALALRRRGCDLKIVADSVACAQAIVAFGRQHGESFE 128 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 ++VD +R GL ++ + G + A + ++ Sbjct: 129 VWIEVDVDGHRSGLDPEDEALLAVAATLVGGGMHLGGVMAHAGSSYEHDTHDA 181 >gi|299132171|ref|ZP_07025366.1| Orn/DAP/Arg decarboxylase 2 [Afipia sp. 1NLS2] gi|298592308|gb|EFI52508.1| Orn/DAP/Arg decarboxylase 2 [Afipia sp. 1NLS2] Length = 380 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N ++ L + G F +V E Sbjct: 23 LVVDLEVVRDNYQTFAKALPDSRVFYAVKANP----APEVLSLLASLG-SCFDTATVAE 76 >gi|86359219|ref|YP_471111.1| ornithine decarboxylase protein [Rhizobium etli CFN 42] gi|86283321|gb|ABC92384.1| probable ornithine decarboxylase protein [Rhizobium etli CFN 42] Length = 506 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL ++ N+H+ ++ VK N ++ L G +F SV E Sbjct: 149 LVVDLDVIRENFHAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 203 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 204 EMALEAGATAARISYGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 261 >gi|302552096|ref|ZP_07304438.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302469714|gb|EFL32807.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 364 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 18/90 (20%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +D L++N M L +A K C +I AG + Sbjct: 14 LVVDPDVLESNIERMAEASRAQGFVLRPHA------KA----HKCAQIGDLQLRAGARGL 63 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQ 90 V ++ E Sbjct: 64 SVATIGEAEAFARVGVDDLFIAYPVWLDAD 93 >gi|154150589|ref|YP_001404207.1| Orn/DAP/Arg decarboxylase 2 [Candidatus Methanoregula boonei 6A8] gi|153999141|gb|ABS55564.1| Orn/DAP/Arg decarboxylase 2 [Methanoregula boonei 6A8] Length = 397 Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 5/57 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ID ++ N+ + VK N+ I L + G F V S+ E Sbjct: 39 IDHAKIRENYREFKKNFPKIQAYFAVKANSN----PGIVKTLMDLGAS-FDVASMPE 90 >gi|227823450|ref|YP_002827423.1| ornithine decarboxylase SpeF [Sinorhizobium fredii NGR234] gi|227342452|gb|ACP26670.1| ornithine decarboxylase SpeF [Sinorhizobium fredii NGR234] Length = 377 Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++ VK N +I L G +F SV E Sbjct: 20 LVVDLDIVRDNFKAFRHALPDSAIYYAVKANP----APEILRLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 + I L + +V K+ Sbjct: 75 EMALEAGATPSRISYGNTIKKERDIARAHALGINLFAVDSHEEVEKVARAAPGARVFC 132 >gi|114705385|ref|ZP_01438293.1| ornithine decarboxylase [Fulvimarina pelagi HTCC2506] gi|114540170|gb|EAU43290.1| ornithine decarboxylase [Fulvimarina pelagi HTCC2506] Length = 377 Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +K N+++ ++ VK N +I L + G +F SV E Sbjct: 20 LVVDLDVVKENFNAFRKALPDSAIFYAVKANP----APEILKLLASLG-SNFDCASVAE 73 >gi|170697287|ref|ZP_02888381.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10] gi|170137907|gb|EDT06141.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10] Length = 376 Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 11/138 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++NN M A + R VK C+ + A G Q V++++E Sbjct: 13 IDVDRMRNNIARMQAHLDALGVRFRPHVKT----TKCQHVVDAQIAGGAQGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + I + I S G Sbjct: 69 EQFFAAGVRDIVYAVGMIPAKLGQALALRRQGCDLKIVADSVETANAIAEFGREHGERFD 128 Query: 124 YALQVDTGFNRLGLSLQE 141 +++D +R G+ + Sbjct: 129 VWIEIDVDGHRSGIPPDD 146 >gi|268590616|ref|ZP_06124837.1| putative amino acid processing protein [Providencia rettgeri DSM 1131] gi|291314008|gb|EFE54461.1| putative amino acid processing protein [Providencia rettgeri DSM 1131] Length = 355 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 11/150 (7%) Query: 12 DLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL L+ N M +K ++A G + +++E Sbjct: 10 DLQQLEKNVRGMTGKLTQQGIEHWPHIKT----HKSVELAKFEIACGAKGITCATLQEAT 65 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-----GVSHPY 124 + + I + + + + ++ ++ +S Sbjct: 66 VMAKGGIDHILLAYPMIGEQKCQQFIELAKKIKLRTIIDSLQGAEQLSAAAKQENQIIEV 125 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKL 154 + VD G +R G+ L + F Sbjct: 126 YIAVDYGAHREGIQLDDLEPFALAIQKLPN 155 >gi|239834177|ref|ZP_04682505.1| alanine racemase domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822240|gb|EEQ93809.1| alanine racemase domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 354 Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 12/149 (8%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ +K N + A + + +K A AG + E Sbjct: 17 IDIDRVKANIARVQAHADAIGVKLRPHIKT----HKLPFFAKMQVEAGAAGITCQKLGEA 72 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS-----SVPQLTFYSKLMSCGVSHP 123 + + + + + +S S ++ Sbjct: 73 EVMADAGLTDIFLPYNILGREKLDRLHALHQRVTLSVTVDNSTSLAGLAARFADEKHPLK 132 Query: 124 YALQVDTGFNRLGLS-LQEALDFTHNSFN 151 ++ DTG R G+ EAL+ Sbjct: 133 VLVECDTGMGRCGVQTPAEALELARIIDQ 161 >gi|84386137|ref|ZP_00989166.1| hypothetical protein V12B01_18126 [Vibrio splendidus 12B01] gi|84378907|gb|EAP95761.1| hypothetical protein V12B01_18126 [Vibrio splendidus 12B01] Length = 424 Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 99/353 (28%), Gaps = 31/353 (8%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPAL----YNAGVQ 58 I +AL NN + M + + + + + G + PA G Sbjct: 46 SLPVAIIKQSALTNNLNWMQSFADHHQVKLSP--------HGKTSMTPAFFRQQLENGAW 97 Query: 59 DFFVTSVEEGVKLRLYT----PQARIFVLYGIHP--GQEKIIFDTNLIPV-ISSVPQLTF 111 V + + + A V Q FD + SSV Sbjct: 98 GITVATPAQAEVAAMAGAKRIIMANQLVGKTNMAIIEQLINEFDVDFYCCVDSSVNMQQL 157 Query: 112 YSKLMSCGVSHPYALQVDTGFNR-LGLSLQEALDFTHNS-----FNKKLGQLSLIISHLA 165 + + ++ R S QE L+ + ++ + H Sbjct: 158 NQYFANTKQTLKVLIEFGVPGGRCGCRSPQEVLELAQTIQDTPALSLAGIEVYEGVIHGD 217 Query: 166 CADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDK 225 A+ + L +L S + + +G L L Sbjct: 218 NAEQDIRTFLNQALTSVESLASDGLIAGQPIITGAGSAWYDVVAECLANLTDYLAIIRPG 277 Query: 226 INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSG 285 H + A+++++ + G GG + + V + + L Sbjct: 278 CYAIHDTGIYLDAQSKVLQRAQVNQGYACELGGDLESALEVWAYVISRPEPTKLVVGLGK 337 Query: 286 LDSEHSPSVFLGGKGFIKGYMVPILGKIT---MDM-TMFDITDSLSIEVGDYI 334 D + + +G+ G + + G + MD T + S IEVGD I Sbjct: 338 RDVAFDAGLPIAERGYRNGEAISVKGLTSTAVMDQHTFVETDGSSEIEVGDMI 390 >gi|260102956|ref|ZP_05753193.1| aspartate alanine antiporter [Lactobacillus helveticus DSM 20075] gi|260083241|gb|EEW67361.1| aspartate alanine antiporter [Lactobacillus helveticus DSM 20075] Length = 377 Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 ITD + VGD++ I GP + + A T Y+ + I Sbjct: 162 ITDYTQLTVGDHVTIIGP---ANYLTNAIKTIGYEKVTGI 198 >gi|294102773|ref|YP_003554631.1| alanine racemase domain protein [Aminobacterium colombiense DSM 12261] gi|293617753|gb|ADE57907.1| alanine racemase domain protein [Aminobacterium colombiense DSM 12261] Length = 377 Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 39/144 (27%), Gaps = 15/144 (10%) Query: 7 LRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL ++ N M + +K IA AG + V Sbjct: 20 PSLLVDLDVMERNISWMQQKAQRAGVNLRPHIKT----HRTPDIAKKQLAAGAKGITVAK 75 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIF-------DTNLIPVISSVPQLTFYSKLMS 117 + EG + G K+ T + V Sbjct: 76 LGEGEVMAAEGIDDIFIAN--ELAGDIKMDRLLALARKTTLAVGVDHPDHVKMLAETFDG 133 Query: 118 CGVSHPYALQVDTGFNRLGLSLQE 141 + VDTG++R G+ +E Sbjct: 134 ESRPMEIMIDVDTGYHRTGVGSKE 157 >gi|182412516|ref|YP_001817582.1| Orn/DAP/Arg decarboxylase 2 [Opitutus terrae PB90-1] gi|177839730|gb|ACB73982.1| Orn/DAP/Arg decarboxylase 2 [Opitutus terrae PB90-1] Length = 379 Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 42/350 (12%), Positives = 92/350 (26%), Gaps = 46/350 (13%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 +D AL+ + + + VK N I L+ G F V S+ E + Sbjct: 21 VDHDALRKAYRTFRKHLPRIQVYYAVKANP----DPAIVRTLFQEGAS-FDVASMPEFMI 75 Query: 71 L-----------RLYTP-QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + R I+ + + + ++ ++ + Sbjct: 76 VHENIKRLPAKERQEWIWDKIIYANPTKPTETLEELNQYKPLVTFDNLEEIQKIKQHAPN 135 Query: 119 -----GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + P + ++ G S EA+D + LG + + + ++ Sbjct: 136 AGLVLRLKVPNTGAMVELSSKFGASPGEAVDLILEADKAGLGVEGISFHVGSQTTNFENY 195 Query: 174 VNSVQL--ERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHP 231 V ++ L F+ L G P + +P + Sbjct: 196 VQALNLSANIFQEARERGYTKMNLLDIGGG---FPAPYDDTVKP-FEMLAKVINTELDRL 251 Query: 232 MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHS 291 + A A++G V+ K + G Y + Sbjct: 252 FPKEIQILAEPGRFLAAVSGTSVAKVIGKAVRDGKTCYYINDGVYHTYSGVIFDHCKYPV 311 Query: 292 PSVFLGGKGFIKGYMVPILG-------KITMDMTMFDITDSLSIEVGDYI 334 + G + G ++M + ++ GD++ Sbjct: 312 KAFKKGPTSL-----CSVFGPTCDALDVVSM------AENLPDLQRGDFV 350 >gi|163797415|ref|ZP_02191367.1| alanine racemase-like protein [alpha proteobacterium BAL199] gi|159177334|gb|EDP61891.1| alanine racemase-like protein [alpha proteobacterium BAL199] Length = 378 Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNA--RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L IDL A + N M + + R K +A A + G V Sbjct: 21 LVIDLDAFERNLDRMAKFAHDTGIRVRPHAKT----HKSPAVARAQMHRGAVGQCCQKVG 76 Query: 67 EGVKLRLYTPQ 77 E L + Sbjct: 77 EAEVLVQAGIE 87 >gi|90418748|ref|ZP_01226659.1| ornithine decarboxylase [Aurantimonas manganoxydans SI85-9A1] gi|90336828|gb|EAS50533.1| ornithine decarboxylase [Aurantimonas manganoxydans SI85-9A1] Length = 377 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+++ ++ VK N ++ L G +F SV E Sbjct: 20 LIVDLDIVEDNFNAFRKALPDSAIFYAVKANP----APEVLKLLAGLG-SNFDCASVAEV 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 R + I L + +V + K+ Sbjct: 75 EMALNAGATPRRISYGNTIKKERDIARAHQLGVALFAVDCVEEVEKVARAAPGARVFC 132 >gi|218246529|ref|YP_002371900.1| alanine racemase domain-containing protein [Cyanothece sp. PCC 8801] gi|218167007|gb|ACK65744.1| alanine racemase domain protein [Cyanothece sp. PCC 8801] Length = 224 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 30/229 (13%) Query: 13 LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTSVEEG 68 L ++ N + R AV K +++ Y AGV+DF + ++E Sbjct: 7 LDQIRQNI------PPHVRLIAVTK---------QVSIDAIKEAYQAGVRDFAESRLQEA 51 Query: 69 V-------KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 + LR + + + + + + +L + S + Sbjct: 52 LPKQAQLQDLRDISWHFIGHLQANKAKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDPN 111 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++ N+ G + E + + ++ +++ L + + Q + Sbjct: 112 ICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQTK 171 Query: 182 FRTLISHYKGI----EASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226 + + E S+ S LL + R G ++G + I Sbjct: 172 VLETQINNQSTLSLNELSMGMSGDYLLAIQAGATMIRLGTIIFGERNSI 220 >gi|222087145|ref|YP_002545680.1| ornithine decarboxylase protein [Agrobacterium radiobacter K84] gi|221724593|gb|ACM27749.1| ornithine decarboxylase protein [Agrobacterium radiobacter K84] Length = 377 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++ VK N ++ L + G +F SV E Sbjct: 20 LVVDLDVVRDNFRAFRHAMPDSAIYYAVKANP----APEVLRLLASLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 75 EMALDAGATAARISFGNTIKKERDVARAHALGISLFAVDSHEEVEKISRAAPGARVFC 132 >gi|332827252|gb|EGK00022.1| hypothetical protein HMPREF9455_03611 [Dysgonomonas gadei ATCC BAA-286] Length = 367 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 65/214 (30%), Gaps = 13/214 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L + ++ N ++ + VK N ++ + +G+ + ++ E Sbjct: 18 LVVYPERIQENIDLAIQIARGTNKLRPHVKTN----KMREVCAIMLKSGITKYKCATIAE 73 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEK-------IIFDTNLIPVISSVPQLTFYSKLMSCGV 120 L L + + P E+ V + + Sbjct: 74 AEMLALVNAPDVLLAYQPVGPKIERLIELIKAYPDTRFSCLVDNEENAKAISDLCRENNI 133 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACA-DDPSSHVNSVQL 179 + + ++ G +R G+ ++A+D + ++ + + D+ + Sbjct: 134 TLNIFIDLNIGMDRTGIKPEKAIDLVQAIIDLPRIHIAGLHGYDGHIHDEDTEIRCKKSD 193 Query: 180 ERFRTLISHYKGIEASLASSSGILLGPNYHFQLT 213 F YK I+ L +++G F + Sbjct: 194 ISFALAEKAYKEIKPLLPHPIALVMGGTPTFPIH 227 >gi|315426064|dbj|BAJ47711.1| alanine racemase domain protein [Candidatus Caldiarchaeum subterraneum] Length = 366 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +D+ LK N M + + VK +IA AG V + Sbjct: 17 LIVDVKVLKRNITEMADFARSLGKKLRPHVKT----HKTPEIAWMQMEAGADGICVQKLG 72 Query: 67 EGVKLRLYTPQ 77 E + Sbjct: 73 EAEVMAEAGLD 83 >gi|315425297|dbj|BAJ46964.1| alanine racemase domain protein [Candidatus Caldiarchaeum subterraneum] Length = 360 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +D+ LK N M + + VK +IA AG V + Sbjct: 11 LIVDVKVLKRNITEMADFARSLGKKLRPHVKT----HKTPEIAWMQMEAGADGICVQKLG 66 Query: 67 EGVKLRLYTPQ 77 E + Sbjct: 67 EAEVMAEAGLD 77 >gi|153011211|ref|YP_001372425.1| alanine racemase domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563099|gb|ABS16596.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188] Length = 354 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 12/149 (8%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ +K N A + + +K A AG + E Sbjct: 17 IDIDRVKANIAKAQAHADAVGVKLRPHIKT----HKLPLFAKMQVEAGATGITCQKLGEA 72 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTF-----YSKLMSCGVSHP 123 + + + + + +S ++ Sbjct: 73 EVMADAGLTNIFLPYNILGQEKLDRLHTLHQRITLSVTVDNRTSLAGLAARFTDEKHPLK 132 Query: 124 YALQVDTGFNRLGLS-LQEALDFTHNSFN 151 ++ DTG R G+ EAL+ Sbjct: 133 VLVECDTGMGRCGVQTPAEALELARIIDQ 161 >gi|299135496|ref|ZP_07028685.1| alanine racemase domain protein [Afipia sp. 1NLS2] gi|298589751|gb|EFI49957.1| alanine racemase domain protein [Afipia sp. 1NLS2] Length = 366 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 7/57 (12%) Query: 9 LKIDLTALKNNWHSMNALS---GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 L +DL A++ N ++ A + R K +IA AG Sbjct: 21 LIVDLDAMEANIKALAARVAAYPSVRVTPHAKA----HKSVEIARRQMAAGAARMCC 73 >gi|296446216|ref|ZP_06888163.1| Orn/DAP/Arg decarboxylase 2 [Methylosinus trichosporium OB3b] gi|296256253|gb|EFH03333.1| Orn/DAP/Arg decarboxylase 2 [Methylosinus trichosporium OB3b] Length = 380 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ S + R VK N ++ L G F SV E Sbjct: 23 LVVDLDIVRDNYQSFARALPDTRVFYAVKANP----APEVLALLARLG-SCFDTASVVE 76 >gi|209519839|ref|ZP_03268623.1| alanine racemase domain protein [Burkholderia sp. H160] gi|209499715|gb|EDZ99786.1| alanine racemase domain protein [Burkholderia sp. H160] Length = 378 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 5/101 (4%) Query: 46 EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLI 100 ++ A AG + V++++E ++ + + + + Sbjct: 46 IEVVRAQIAAGARGITVSTLKEAEAFFAAGIDDILYAVSMVPSKLPRALALRRRGCDLKL 105 Query: 101 PVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQE 141 V + + G + ++VDT +R G+ ++ Sbjct: 106 VVDNPTAAAAIAAFGDQHGETFEVWIEVDTDGHRSGIQPEQ 146 >gi|294508466|ref|YP_003572524.1| Alanine racemase [Salinibacter ruber M8] gi|294344794|emb|CBH25572.1| Alanine racemase [Salinibacter ruber M8] Length = 388 Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 34/138 (24%), Gaps = 11/138 (7%) Query: 9 LKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L I+ L+ N +M A + + VK IA G V +V Sbjct: 11 LLIEQARLQANLAAMQATANANDVTLRPHVKT----HKSVAIAEQQQQRGATGLTVATVH 66 Query: 67 EGVKLRLYTPQARIFVLY--GIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 E G + T V + + Sbjct: 67 EAEAFVAAGFDDVRVAYPVVGRPKHERLRALRAAATLSFTVDTMAGADQASAVHAGADNP 126 Query: 122 HPYALQVDTGFNRLGLSL 139 ++VD G R G+ Sbjct: 127 VEVLMEVDVGHGRCGVHW 144 >gi|319406162|emb|CBI79799.1| lysine/ornithine decarboxylase [Bartonella sp. AR 15-3] Length = 377 Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 41/164 (25%), Gaps = 5/164 (3%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL + N+ + +R +K N +I L + G F Sbjct: 13 HRSEGPCLVVDLDVVHENYLNFEKALPQSRIFYAIKANP----APEILRLLVSLG-SSFD 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 S+ E A + I + +V K+ Sbjct: 68 AASIAEIEMALEAGATADRISFGNTIKKERDIARAYAFGVSLYAVDCFEEVEKVACAAPG 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165 +V T L + + L + Sbjct: 128 ARVFCRVLTDGEGAEWPLSQKFGCVPSMAVDVLRYAHHLGLQAC 171 >gi|118590930|ref|ZP_01548330.1| ornithine decarboxylase [Stappia aggregata IAM 12614] gi|118436452|gb|EAV43093.1| ornithine decarboxylase [Stappia aggregata IAM 12614] Length = 406 Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 14 TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73 LK++ +L AV K N G + AL AG+ F V S E ++ Sbjct: 26 DVLKHDAQQFQSLFPGKTAYAV-KTN----GEPFVLEALAKAGISCFDVASPAEFASVKK 80 Query: 74 YTPQARIFVLYG 85 P+A + ++ Sbjct: 81 AAPKAEMLYMHP 92 >gi|148657962|ref|YP_001278167.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1] gi|148570072|gb|ABQ92217.1| alanine racemase domain protein [Roseiflexus sp. RS-1] Length = 349 Score = 40.4 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 17/75 (22%), Gaps = 6/75 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL L+ N A +K +IA AG + Sbjct: 11 AIIDLDRLERNIARFQTYLSQHGIANRPHIKT----HKIPQIARMQMAAGAVGITCQKLG 66 Query: 67 EGVKLRLYTPQARIF 81 E + Sbjct: 67 EAEVMADAGIDDIFI 81 >gi|148255000|ref|YP_001239585.1| putative amino acid processing enzyme-like protein [Bradyrhizobium sp. BTAi1] gi|146407173|gb|ABQ35679.1| putative amino acid processing enzyme-related protein (aldolase or racemase) [Bradyrhizobium sp. BTAi1] Length = 359 Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID+ ++ N + A A A +K ++A AG Q + Sbjct: 18 AVIDMDRVERNIARIQAQCAAAGVANRPHIKT----HKSPELAKLQIAAGAQGITCQKIG 73 Query: 67 EGVKLRLYTPQ 77 E + Sbjct: 74 EAEIMAEAGID 84 >gi|150397970|ref|YP_001328437.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium medicae WSM419] gi|150029485|gb|ABR61602.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium medicae WSM419] Length = 377 Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++ VK N ++ L + G +F SV E Sbjct: 20 LVVDLDVVRDNFKAFRHALPDSAIYYAVKANP----APEVLRLLASLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 + + L + +V K+ Sbjct: 75 EMALDAGATPNRISYGNTIKKERDVARAHTLGISLFAVDSHEEVEKIARAAPGARVFC 132 >gi|119715651|ref|YP_922616.1| alanine racemase domain-containing protein [Nocardioides sp. JS614] gi|119536312|gb|ABL80929.1| alanine racemase domain protein [Nocardioides sp. JS614] Length = 386 Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 18/73 (24%) Query: 11 IDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 +DL ++ N SM +L+ +A++ IA +AG + Sbjct: 38 VDLDQVERNIASMASLAKRRGMTLRPHAKS----------HKSTFIADLQLDAGATGLCL 87 Query: 63 TSVEEGVKLRLYT 75 + E + + Sbjct: 88 ATAGEAEVMWRHG 100 >gi|163761098|ref|ZP_02168175.1| ornithine decarboxylase [Hoeflea phototrophica DFL-43] gi|162281649|gb|EDQ31943.1| ornithine decarboxylase [Hoeflea phototrophica DFL-43] Length = 417 Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Query: 14 TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73 LK + L AV K N G + L AGV+ F V S E +R Sbjct: 37 DVLKQDARQFMKLFPGETAYAV-KTN----GEPMVLKTLVEAGVKIFDVASPGEFEAVRA 91 Query: 74 YTPQARIFVLYG 85 +P A + ++ Sbjct: 92 ASPDAEMLYMHP 103 >gi|27382870|ref|NP_774399.1| ornithine decarboxylase [Bradyrhizobium japonicum USDA 110] gi|27356043|dbj|BAC53024.1| ornithine decarboxylase [Bradyrhizobium japonicum USDA 110] Length = 380 Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + + ++R VK N ++ L + G F +V E Sbjct: 23 LVVDLEVVRDNYQTFSKALPDSRVFYAVKANP----APEVLALLASMG-SCFDTATVAE 76 >gi|323463814|gb|ADX75967.1| amino acid racemase, putative [Staphylococcus pseudintermedius ED99] Length = 358 Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 7/164 (4%) Query: 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 ++ I+L+ +K N + + R V K G K+ G + Sbjct: 1 MPQIHINLSKIKYNAMVLQHMLAEQGIRMIPVTKCMG---GDPKVRQQFREMGFNTLSES 57 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC-GVSH 122 + + P ++ G P + + + I + + + + S GV H Sbjct: 58 RLT-AMMTNEQHPTEHDMMIKGALPNEIHDVVRYSQISIQTELETIRALSDEAVAQGVKH 116 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLAC 166 L VD R G E + K L + + C Sbjct: 117 HIYLMVDWKDGREGALTYEVVPLIKQIIRLKGVYLKGLSFNFMC 160 >gi|253582195|ref|ZP_04859418.1| serine racemase [Fusobacterium varium ATCC 27725] gi|251835734|gb|EES64272.1| serine racemase [Fusobacterium varium ATCC 27725] Length = 369 Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 39/331 (11%), Positives = 92/331 (27%), Gaps = 34/331 (10%) Query: 20 WHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ 77 + + ++K ++ AG +++E + Sbjct: 22 IKTYQKMCTNNGKELWPMIKT----HKSMELLKMQIEAGATGALCGTLDEAEACCKIGLK 77 Query: 78 ARIFVLYGIHPGQEKIIFDT----NLIPVISSVPQLTFYSKLMSCGVSHP-YALQVDTGF 132 ++ + + + + I I ++ + + + Y + VD+G Sbjct: 78 KIMYAYPVASKESIERVIELTKKSDFIIRIDNLEAAKMINDMAVAADTVVSYTIIVDSGL 137 Query: 133 NRLGLSLQEALDFT-----HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +R GL + + ++F + + A ++ + + T Sbjct: 138 HRFGLPVNKIVEFADKLKTMKGLKLRGISTHPGHVYSATCENEVHKYVIDECKTLDTAKK 197 Query: 188 HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRK 247 + L Y + P S IN HP V ++ + + Sbjct: 198 YMNDAGYEL----------EYITSGSTPTFSEAVKDKNINVLHPGNYVFLDSIQLSIKKA 247 Query: 248 ALAGELVSYGGQKKLTRDSLIAVAAIGY-ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYM 306 + ++ + + G G G +S +G I + Sbjct: 248 EINDCALTVYATIISHPKEDLFICDAGAKCLGLDQGAHGNNSIVGFGTVIGHPEVIVASL 307 Query: 307 VPILGKITMDMTMFDITDSLSIEVGDYIQIF 337 +GK I +++VGD I+I Sbjct: 308 SEEVGK-------LHIHGETNLKVGDKIEII 331 >gi|298293889|ref|YP_003695828.1| Orn/DAP/Arg decarboxylase 2 [Starkeya novella DSM 506] gi|296930400|gb|ADH91209.1| Orn/DAP/Arg decarboxylase 2 [Starkeya novella DSM 506] Length = 376 Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 5/67 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 + +DL +++N+ + + R VK N I AL G F SV E Sbjct: 19 VVVDLDVVRSNYAAFARALPDTRVFYAVKANP----DPAILSALAELG-SCFDCASVNEI 73 Query: 69 VKLRLYT 75 + Sbjct: 74 LMALAAG 80 >gi|229591485|ref|YP_002873604.1| putative metal-activated pyridoxal enzyme [Pseudomonas fluorescens SBW25] gi|229363351|emb|CAY50481.1| putative metal-activated pyridoxal enzyme [Pseudomonas fluorescens SBW25] Length = 378 Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 11/175 (6%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ +++N M R +K C + A AG V++++E Sbjct: 15 IDIPRMQHNIQRMQQRMNTLGVRLRPHIKT----SKCLPVIQAQLAAGASGVTVSTLKEA 70 Query: 69 VKLRLYTPQARIF---VLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSCGVSHP 123 + V G P + + S + Sbjct: 71 QHCFSQGILDVFYAVAVAPGKLPQALALRRQGCNLSLLTDSVAGAQALVAFAQQHDERLD 130 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL+ ++ G + A + ++Q Sbjct: 131 VWIEIDCDGHRSGLAAEDEALLDVARILSDGGMHLRGVMTHAGSSYELDTPEALQ 185 >gi|163851469|ref|YP_001639512.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium extorquens PA1] gi|163663074|gb|ABY30441.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium extorquens PA1] Length = 388 Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL ++ N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRENYTAFARALPDTRVFYAVKANP----AAEVLRLLAEMG-SCFDTASVAE 76 >gi|159901911|gb|ABX10644.1| alanine racemase [uncultured planctomycete 3FN] Length = 363 Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 35/142 (24%), Gaps = 23/142 (16%) Query: 11 IDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 IDL L N +M + + IA AG Sbjct: 17 IDLNQLDANIKTMADFIISRGKQWRPHEKC----------HKTPAIALKQIAAGAIGVTC 66 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL-----IPVISSVPQLTFYSKLMS 117 V E + + + + + + I + Sbjct: 67 AKVSEAEVMAAAGIHDILIANMIVGTPKWERVAALCRTTDVIIACDHFAQVEPLAAICRR 126 Query: 118 CGVSHPYALQVDTGFNRLGLSL 139 GV+ ++VD G NR+G Sbjct: 127 NGVTCRVIVEVDIGLNRVGTRP 148 >gi|242240514|ref|YP_002988695.1| alanine racemase domain protein [Dickeya dadantii Ech703] gi|242132571|gb|ACS86873.1| alanine racemase domain protein [Dickeya dadantii Ech703] Length = 423 Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 14 TALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALY-----NAGVQDFFVTSVE 66 +AL++N + A AA G ++PA+ G + Sbjct: 55 SALEHNLRQLAAFCRENGVLLAA--------HGKTSMSPAILRRAITEGGAWGLSAATPA 106 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105 + LR + + + + P + + Sbjct: 107 QVRALRQFGIRNVLLANELVDPAGIRWVAQYQQQHPEHD 145 >gi|240138634|ref|YP_002963106.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase [Methylobacterium extorquens AM1] gi|240008603|gb|ACS39829.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase [Methylobacterium extorquens AM1] Length = 388 Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL +++N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRDNYTAFARALPDTRVFYAVKANP----AAEVLRLLAEMG-SCFDTASVAE 76 >gi|218530277|ref|YP_002421093.1| ornithine decarboxylase [Methylobacterium chloromethanicum CM4] gi|218522580|gb|ACK83165.1| Ornithine decarboxylase [Methylobacterium chloromethanicum CM4] Length = 388 Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL +++N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRDNYTAFARALPDTRVFYAVKANP----AAEVLRLLAEMG-SCFDTASVAE 76 >gi|254561232|ref|YP_003068327.1| ornithine/diaminopimelate PLP-dependent decarboxylase [Methylobacterium extorquens DM4] gi|254268510|emb|CAX24467.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase [Methylobacterium extorquens DM4] Length = 388 Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL +++N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRDNYTAFARALPDTRVFYAVKANP----AAEVLRLLAEMG-SCFDTASVAE 76 >gi|188581259|ref|YP_001924704.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium populi BJ001] gi|179344757|gb|ACB80169.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium populi BJ001] Length = 388 Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL +++N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRDNYTAFARALPDTRVFYAVKANP----APEVLRLLAEMG-SCFDTASVAE 76 >gi|145296605|ref|YP_001139426.1| hypothetical protein cgR_2513 [Corynebacterium glutamicum R] gi|140846525|dbj|BAF55524.1| hypothetical protein [Corynebacterium glutamicum R] Length = 380 Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 32/134 (23%), Gaps = 18/134 (13%) Query: 11 IDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ID L N M AL + +T +IA +AG + Sbjct: 47 IDRERLTANIFKMAAHAAANGIALRPHVKT----------HKIIEIAQMQVDAGARGITC 96 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 +V E + + V + Sbjct: 97 ATVGEAEIFAGAGFTDIFIAYPLYLTDHAVQRLNAIPGAISIGVDSVEMAQATAGLREDI 156 Query: 123 PYALQVDTGFNRLG 136 ++VD+G R G Sbjct: 157 KALIEVDSGHRRSG 170 >gi|121534334|ref|ZP_01666158.1| Lysine decarboxylase [Thermosinus carboxydivorans Nor1] gi|121307104|gb|EAX48022.1| Lysine decarboxylase [Thermosinus carboxydivorans Nor1] Length = 385 Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 5/75 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L + ++ N++ + +K N +I L G F V S E Sbjct: 24 LVLSRDQIRYNYNFLAEHLPGVHIYYAMKANP----DPRIIDELAGLGA-CFDVASDGEI 78 Query: 69 VKLRLYTPQARIFVL 83 + L V Sbjct: 79 LALAQMGIAPERIVY 93 >gi|121602552|ref|YP_989352.1| pyridoxal-dependent decarboxylase [Bartonella bacilliformis KC583] gi|120614729|gb|ABM45330.1| pyridoxal-dependent decarboxylase [Bartonella bacilliformis KC583] Length = 377 Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 5/137 (3%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL + N+ + +R VK N +I L + G F Sbjct: 13 HRSEGPCLVVDLDIVHENYLNFEKALPQSRIFYAVKANP----APEILRLLVSLG-SSFD 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 SV E + A + I L + +V + K+ Sbjct: 68 AASVAEIKMILESGATAERISFGNTIKKERDIASAHALGVSLYAVDCIEEVEKVARAAPG 127 Query: 122 HPYALQVDTGFNRLGLS 138 +V T Sbjct: 128 ARVFCRVLTNGEGAEWP 144 >gi|220926699|ref|YP_002502001.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium nodulans ORS 2060] gi|219951306|gb|ACL61698.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium nodulans ORS 2060] Length = 403 Score = 39.6 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 12 DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 DL+AL ++ A L VK N ++ AL V F V S E V+ Sbjct: 27 DLSALGEQARALRAPLPPGTDFFYAVKAN----NDPQVLRALAPH-VAGFEVASAGEIVR 81 Query: 71 LRLYTPQARIFVLYGI 86 +R A V+ G Sbjct: 82 VRQAVGSAARIVMGGP 97 >gi|33595153|ref|NP_882796.1| putative metal-activated pyridoxal enzyme [Bordetella parapertussis 12822] gi|33565230|emb|CAE36028.1| putative metal-activated pyridoxal enzyme [Bordetella parapertussis] Length = 361 Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 11/167 (6%) Query: 14 TALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 +++N M VK C +A A AG + V++++E + Sbjct: 2 ARMQHNIARMQDRMNGLGVSLRPHVKT----SKCTPVALAQLAAGARGVTVSTLKEAEQF 57 Query: 72 RLYTPQARIF---VLYGIHPGQEKIIFDTNL--IPVISSVPQLTFYSKLMSCGVSHPYAL 126 ++ + P + I ++ T + + Sbjct: 58 FAAGIADILYAVGMAEHRLPAALALRRRGCDLKIITDNAESARTIADFGRAHDEVFEVWI 117 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 ++DT +R G+ +EA + + G + A + Sbjct: 118 EIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDT 164 >gi|90426308|ref|YP_534678.1| ornithine decarboxylase [Rhodopseudomonas palustris BisB18] gi|90108322|gb|ABD90359.1| ornithine decarboxylase [Rhodopseudomonas palustris BisB18] Length = 380 Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ S ++R VK N ++ L + G F SV+E Sbjct: 23 LVVDLDVVRDNFQSFAKALPDSRVFYAVKANP----APEVLSLLASMG-SCFDCASVQE 76 >gi|152981283|ref|YP_001351715.1| low-specificity D-threonine aldolase [Janthinobacterium sp. Marseille] gi|151281360|gb|ABR89770.1| low-specificity D-threonine aldolase [Janthinobacterium sp. Marseille] Length = 379 Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L +DL A ++N + L + + K IA AG V Sbjct: 29 LLVDLDAFEDNLARVHTRVLQAGLKVRSHGKA----HKSPAIAHRQLAAGATGICCQKVS 84 Query: 67 EGVKLRLYTPQ 77 E Sbjct: 85 EAEIFVEAGIT 95 >gi|52842730|ref|YP_096529.1| metal-activated pyridoxal enzyme [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629841|gb|AAU28582.1| metal-activated pyridoxal enzyme [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 384 Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 54/195 (27%), Gaps = 27/195 (13%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L ID LK N M + + +T C +IA G Sbjct: 26 LVIDYEKLKYNLKVMQQHGFEWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 75 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSC 118 + E L + + + +F+ V L Sbjct: 76 SAAKLSEAEVLVSKQITNVLITSPIVSEAKYSRLFNCLKSAPDLMLVVDGKDNIRMLNEL 135 Query: 119 GVSHPYALQ----VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G S + +D+G R G++ + AL++ H + +L I A Sbjct: 136 GKSLNQPVYVLLDIDSGIGRTGINPEVALEYGHFINSMNWLKLKGIQC---YAGHLQHIQ 192 Query: 175 NSVQLERFRTLISHY 189 N + + F I Sbjct: 193 NYEERKAFSLRIMDM 207 >gi|323467193|gb|ADX70880.1| AAE family aspartate:alanine exchanger [Lactobacillus helveticus H10] Length = 552 Score = 39.6 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 ITD + VGD++ I GP + + A T Y+ + I Sbjct: 337 ITDYTRLTVGDHVTIIGP---ANYLTNAIKTIGYEKVTGI 373 >gi|229494232|ref|ZP_04387995.1| D-amino acid deaminase [Rhodococcus erythropolis SK121] gi|229318594|gb|EEN84452.1| D-amino acid deaminase [Rhodococcus erythropolis SK121] Length = 436 Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 18/104 (17%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + ++ A+ +N M L+ +A+T ++ +AG Sbjct: 58 MTLNRAAIAHNVALMAQFCSDHDVDLAPHAKTTM----------SPELVRRQLDAGAWAM 107 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104 +V + LR + I + P + I D Sbjct: 108 TAATVAQARILREFGVDTIIIASQVLDPAGIRWICDAQATDPDF 151 >gi|206562454|ref|YP_002233217.1| putative alanine racemase [Burkholderia cenocepacia J2315] gi|198038494|emb|CAR54452.1| putative alanine racemase [Burkholderia cenocepacia J2315] Length = 376 Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 11/180 (6%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 +H+ ID+ ++ N M + R VK C + A AG Q Sbjct: 3 LHTLNTPAALIDVGRMQRNIARMQTHLDALGVRFRPHVKT----TKCRHVVDAQIAAGAQ 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYS 113 V++++E + + + ++ + + + I S + Sbjct: 59 GITVSTLKEAEQFFAHGIRDIVYAVGMVPAKLGQALALRRQGCDLKIVADSLPAAQAIAA 118 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 G ++VD +R G+ + L G L + A + Sbjct: 119 FGREHGERFDVWIEVDVDGHRSGIPPEADLLIDVGRALTGGGTLLGGVLAHAGSSYEHDT 178 >gi|20091552|ref|NP_617627.1| ornithine decarboxylase [Methanosarcina acetivorans C2A] gi|19916709|gb|AAM06107.1| ornithine decarboxylase [Methanosarcina acetivorans C2A] Length = 390 Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL ++ ++ + A+ VK N +++ AL + G +F V ++ E Sbjct: 34 LVIDLQKIERSYEELVEHMPFAKIHYAVKANP----MDRVVLALKDKG-SNFDVATIYE 87 >gi|23012520|ref|ZP_00052584.1| COG0019: Diaminopimelate decarboxylase [Magnetospirillum magnetotacticum MS-1] Length = 274 Score = 39.6 bits (91), Expect = 0.84, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL ++ N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRENYTAFARALPDTRVFYAVKANP----AAEVLRLLAEMG-SCFDTASVAE 76 >gi|254249069|ref|ZP_04942389.1| Alanine racemase [Burkholderia cenocepacia PC184] gi|124875570|gb|EAY65560.1| Alanine racemase [Burkholderia cenocepacia PC184] Length = 376 Score = 39.6 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 11/147 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 +H+ ID+ ++ N M + R VK C ++ AG Q Sbjct: 3 LHTLNTPAALIDVARMQRNIARMQTHLDALGVRFRPHVKT----TKCRQVVDVQIAAGAQ 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYS 113 V++++E + + + ++ + + + I S + Sbjct: 59 GITVSTLKEAEQFFAHGIRDIVYAVDMVPAKLGQALALRRQGCDLKIVADSLPAAHAIAA 118 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQ 140 G ++VD +R G+ Sbjct: 119 FGREHGERFDVWIEVDVDGHRSGIPPD 145 >gi|86751645|ref|YP_488141.1| ornithine decarboxylase [Rhodopseudomonas palustris HaA2] gi|86574673|gb|ABD09230.1| ornithine decarboxylase [Rhodopseudomonas palustris HaA2] Length = 380 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ S ++R VK N ++ L + G F SV+E Sbjct: 23 LVVDLDVVRDNFASFAKALPDSRVFYAVKANP----APEVLSLLASLG-SCFDCASVQE 76 >gi|226227945|ref|YP_002762051.1| hypothetical protein GAU_2539 [Gemmatimonas aurantiaca T-27] gi|226091136|dbj|BAH39581.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 397 Score = 39.3 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 6/61 (9%) Query: 11 IDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +DL L +N M A + VK +IA G ++ E Sbjct: 34 VDLDRLAHNLDRMAAYVTLHGLKLRPHVKT----HKSPRIAAEQLRLGAVGLSCATLREA 89 Query: 69 V 69 Sbjct: 90 E 90 >gi|190893472|ref|YP_001980014.1| ornithine decarboxylase [Rhizobium etli CIAT 652] gi|190698751|gb|ACE92836.1| probable ornithine decarboxylase protein [Rhizobium etli CIAT 652] Length = 377 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+H+ ++ VK N ++ L G +F SV E Sbjct: 20 LVVDLDVVRDNFHAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + I L + +V K+ Sbjct: 75 EMALEAGATAARISFGNTIKKERDIARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 132 >gi|226304478|ref|YP_002764436.1| hypothetical protein RER_09890 [Rhodococcus erythropolis PR4] gi|226183593|dbj|BAH31697.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 436 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 18/98 (18%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + +D A+ +N M L+ +A+T ++ +AG Sbjct: 58 MTLDRAAIAHNVDLMAQFCSDHDVDLAPHAKTTM----------SPELVRRQLDAGAWAM 107 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN 98 +V + LR + I + P + I D Sbjct: 108 TAATVAQARILREFGVDTIIIASQVLDPAGIRWICDAQ 145 >gi|91789931|ref|YP_550883.1| putative threonine aldolase [Polaromonas sp. JS666] gi|91699156|gb|ABE45985.1| putative threonine aldolase [Polaromonas sp. JS666] Length = 400 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 25/105 (23%), Gaps = 18/105 (17%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L IDL A+K N M + +A+ +A AG Sbjct: 31 LVIDLDAMKRNLGRMAEFAKKHSIRWRPHAKM----------HKSASLAKLQIKAGAVGV 80 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS 105 V E + I P + + S Sbjct: 81 CVQKTAEAEAMVAGGVYDVYISNEVIAPAKLARVAALTQKVAPHS 125 >gi|85714753|ref|ZP_01045740.1| probable diaminopimelate decarboxylase protein [Nitrobacter sp. Nb-311A] gi|85698638|gb|EAQ36508.1| probable diaminopimelate decarboxylase protein [Nitrobacter sp. Nb-311A] Length = 392 Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 58/230 (25%), Gaps = 32/230 (13%) Query: 12 DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 DL L+ ++ L + +K N+ I AL F V S+ E Sbjct: 23 DLAHLRRRADTLRRCLPAQCKLFYAIKANS----DAPILRALL-HRTDGFEVASLGEIQA 77 Query: 71 LRLYTPQARIFVLYGIH---PGQEKIIFDT-NLIPVISSVPQLTFYSKLMSCGV------ 120 +R + V++G + + D L+ + S QL + Sbjct: 78 VR--GINDAVPVVFGGPGKTDAELEGALDQGVLLIHVESEHQLRRLDWIARRRNQRADIL 135 Query: 121 ------SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 S P + G ++EA L + L H+ + Sbjct: 136 LRVNPASVPQQATLRMGGQATQFGIEEAQIPALIELALGLPGVRLRGLHIHSISNNLDAQ 195 Query: 175 NSVQLERFRTLISHYKGIEASLASSS--------GILLGPNYHFQLTRPG 216 + L ++ L P F Sbjct: 196 THLALLEHYFDLTSTWQRRYQLEFDWLNAGGGIGINYANPQASFDWEGFC 245 >gi|241206375|ref|YP_002977471.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860265|gb|ACS57932.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 377 Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+H+ ++ VK N ++ L G +F SV E Sbjct: 20 LVVDLDVVRDNFHAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 75 EMALEAGATAARISYGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 132 >gi|256823045|ref|YP_003147008.1| bifunctional aspartate kinase/diaminopimelate decarboxylase protein [Kangiella koreensis DSM 16069] gi|256796584|gb|ACV27240.1| aspartate kinase [Kangiella koreensis DSM 16069] Length = 853 Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 66/198 (33%), Gaps = 22/198 (11%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 +L A+ N ++ ++S + VK N ++ Y G+ F S+ E ++ Sbjct: 502 NLAAVAENIKNLQSISAVDQIFFAVKAN--NH--PQVLTTAYEQGI-GFETVSIFEVERI 556 Query: 72 RLYTP----QARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--------- 118 + P F + + D ++ + S L +++K + Sbjct: 557 KELFPAIDTNRIFFTPNFASHNEYQKALDYGVMLSLDSSYPLKYWAKTFANKTIFLRIDP 616 Query: 119 --GVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G H ++ ++ G+ +QE + + L + A + ++ + Sbjct: 617 NVGKGHHENVRTAGATSKFGIPIQELEELLPIIKEHNI--KVLGLHAHAGSGILTNEHWA 674 Query: 177 VQLERFRTLISHYKGIEA 194 ++ + ++ Sbjct: 675 EHARLLASVAKQFPDVKY 692 >gi|325001747|ref|ZP_08122859.1| metal-activated pyridoxal enzyme [Pseudonocardia sp. P1] Length = 336 Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +D +AL+ N M A+ R VK +++ G F +V E Sbjct: 11 LVVDASALEANLADMAAVLPGPRLRPHVKA----HKTTELSRRQLAHGHAGFTCATVRE 65 >gi|257059562|ref|YP_003137450.1| alanine racemase [Cyanothece sp. PCC 8802] gi|256589728|gb|ACV00615.1| alanine racemase domain protein [Cyanothece sp. PCC 8802] Length = 224 Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 57/180 (31%), Gaps = 26/180 (14%) Query: 13 LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIA----PALYNAGVQDFFVTSVEEG 68 L ++ N + R AV K +++ Y AGV+DF + ++E Sbjct: 7 LDQIRQNI------PPHVRLIAVTK---------QVSIDAIKEAYQAGVRDFAESRLQEA 51 Query: 69 V-------KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 + LR + + + + + + +L + S + Sbjct: 52 LPKQAQLQDLRDISWHFIGHLQANKAKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDPN 111 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLER 181 +++ N+ G + E + + ++ +++ L + + Q + Sbjct: 112 ICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQTK 171 >gi|330953813|gb|EGH54073.1| alanine racemase [Pseudomonas syringae Cit 7] Length = 378 Score = 39.3 bits (90), Expect = 0.97, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D++ +++N M R VK C + A AG V++++E Sbjct: 16 DVSRMQHNIQRMQQRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVTVSTLKEAE 71 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYS-----KLMSCGVSHPY 124 + + E+ + +S + + + Sbjct: 72 HCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSLLTDSVAAARAIVVFGQAHDERFDV 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++ +A G + A + ++Q Sbjct: 132 WIEIDCDGHRSGLTVDDASLVEVARTLVDGGMQLRGVMTHAGSSYDLDTPAALQ 185 >gi|295699224|ref|YP_003607117.1| alanine racemase domain protein [Burkholderia sp. CCGE1002] gi|295438437|gb|ADG17606.1| alanine racemase domain protein [Burkholderia sp. CCGE1002] Length = 382 Score = 39.3 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 11/138 (7%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++ N M VK C + A AG + V++++E Sbjct: 13 IDVARMQKNIARMQGRMNELGVAFRPHVKT----TKCIDVVRAQIAAGARGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 ++ + + + + V + + G + Sbjct: 69 EAFFAAGVDDILYAVSMVPSKLPRALALRRQGCDLKLVVDNPTAAAALAAFGDQHGETFE 128 Query: 124 YALQVDTGFNRLGLSLQE 141 ++VDT +R G+ ++ Sbjct: 129 VWIEVDTDGHRSGIQPEQ 146 >gi|50059369|gb|AAT69409.1| alanine racemase [Borrelia burgdorferi N40] Length = 52 Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 11/26 (42%) Query: 23 MNALSGNARTAAVVKDNAYGLGCEKI 48 + G A +K +AYG G I Sbjct: 27 IKNKIGEKEIVATLKGDAYGHGLINI 52 >gi|327189543|gb|EGE56696.1| putative ornithine decarboxylase protein [Rhizobium etli CNPAF512] Length = 377 Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+H+ ++ VK N ++ L G +F SV E Sbjct: 20 LVVDLDVVRDNFHAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 75 EMALEAGATAARISFGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 132 >gi|91976729|ref|YP_569388.1| alanine racemase-like [Rhodopseudomonas palustris BisB5] gi|91683185|gb|ABE39487.1| alanine racemase-like [Rhodopseudomonas palustris BisB5] Length = 360 Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L ID+ ++ N + AL A A +K +A AG + + Sbjct: 18 LVIDMDRVERNIARVQALCDAAGVANRPHIKT----HKSPLLAQMQIAAGARGITCQKIG 73 Query: 67 EGVKLRLYTPQ 77 E + Sbjct: 74 EAEVMADAGID 84 >gi|254467051|ref|ZP_05080462.1| ornithine decarboxylase, putative [Rhodobacterales bacterium Y4I] gi|206687959|gb|EDZ48441.1| ornithine decarboxylase, putative [Rhodobacterales bacterium Y4I] Length = 383 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 11/142 (7%) Query: 36 VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI-HPGQEKII 94 VK N + L AG+ F V S E +R +P A + + + Sbjct: 51 VKANP--H--PAVLSNLVAAGITAFDVASPAEMEAVRAASPDAVMHYNNPMRSEAEIATG 106 Query: 95 FDTNLIPVISSVPQLT------FYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHN 148 + + S ++ + P A ++ G + +EA++ Sbjct: 107 IEHGVASWSVDELSELEKLDAVPRSCEVAVRFALPVAGAAYDFGSKFGAAPEEAVELLKQ 166 Query: 149 SFNKKLGQLSLIISHLACADDP 170 K C D+ Sbjct: 167 VAAKGWTPALCFHPGTQCEDEM 188 >gi|295680721|ref|YP_003609295.1| alanine racemase domain protein [Burkholderia sp. CCGE1002] gi|295440616|gb|ADG19784.1| alanine racemase domain protein [Burkholderia sp. CCGE1002] Length = 376 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 11/138 (7%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ +++N +M A AR VK C+++ A AG V++++E Sbjct: 13 IDVARMRHNIDNMQARLDKLGARFRPHVKT----TKCKQVVDAQVAAGACGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + + + I V S Sbjct: 69 EQFFASGVRDIVYAVGMVPTKLPQALALRQRGCDLKIVVDSLQVARAVADFGREHDERFE 128 Query: 124 YALQVDTGFNRLGLSLQE 141 +++D +R G+ + Sbjct: 129 VWVEIDVDGHRSGIQPDD 146 >gi|16272064|ref|NP_438263.1| hypothetical protein HI0090 [Haemophilus influenzae Rd KW20] gi|260580606|ref|ZP_05848433.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|1723862|sp|P44506|Y090_HAEIN RecName: Full=UPF0001 protein HI_0090 gi|1573041|gb|AAC21768.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092668|gb|EEW76604.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 237 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 33/219 (15%) Query: 15 ALKNNWHSMNALS-----------GNARTAAVVKDNAYGLGCEKIAPAL--YNAGVQDFF 61 +++N + + + AV K + I+ L Y AG F Sbjct: 2 NIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKT-------KPISAILSAYQAGQTAFG 54 Query: 62 VTSVEEGVK----LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 V+EGV+ + + + +++ + ++ Sbjct: 55 ENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQR 114 Query: 118 CGVSHPYALQVDTGF----NRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 P + + ++ G+ +E L + N L +++ A D+ Sbjct: 115 PTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDNI--- 171 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQL 212 + Q FR ++ ++ ++ L + L + Sbjct: 172 --AEQENAFRKMLELFEQLKQVLPNQQIDTLSMGMTDDM 208 >gi|170751044|ref|YP_001757304.1| ornithine decarboxylase [Methylobacterium radiotolerans JCM 2831] gi|170657566|gb|ACB26621.1| Ornithine decarboxylase [Methylobacterium radiotolerans JCM 2831] Length = 388 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL +++N+ + + R VK N ++ L G F SV E Sbjct: 26 DLDVVRDNYTAFARSLPDTRVFYAVKANP----APEVLRLLAEMG-SCFDTASVAE 76 >gi|297622385|ref|YP_003703819.1| diaminopimelate decarboxylase [Truepera radiovictrix DSM 17093] gi|297163565|gb|ADI13276.1| diaminopimelate decarboxylase [Truepera radiovictrix DSM 17093] Length = 385 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 10/108 (9%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF--VTSVEEGV 69 DL A+ + + A A VK N L + V SV E Sbjct: 24 DLDAIGDRVARLRAALPTAELLYAVKAN-------PCGAVLRHLAAAGLGAEVISVGELA 76 Query: 70 KLRLYT-PQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 + R P+ RI + + + Q + + Sbjct: 77 RARRAGFPEGRILLGGPRQDPPLVAAAWGVGWVSLDNPSQWRGWQRFA 124 >gi|289678897|ref|ZP_06499787.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 337 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D++ +++N M R VK C + A AG V++++E Sbjct: 19 DVSRMQHNIQRMQQRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVTVSTLKEAE 74 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + E+ + I S + + Sbjct: 75 HCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVTAARAIVAFGQAHDERFDV 134 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++ + S G + A + ++Q Sbjct: 135 WIEIDCDGHRSGLTVDDPSLVEVASTLVDGGMQLRGVMTHAGSSYDLDTPAALQ 188 >gi|15966628|ref|NP_386981.1| putative ornithine, DAP, or arginine decarboxylase protein [Sinorhizobium meliloti 1021] gi|307300337|ref|ZP_07580117.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti BL225C] gi|307319620|ref|ZP_07599046.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti AK83] gi|15075900|emb|CAC47454.1| Putative ornithine, DAP, or arginine decarboxylase [Sinorhizobium meliloti 1021] gi|306894742|gb|EFN25502.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti AK83] gi|306904503|gb|EFN35087.1| Orn/DAP/Arg decarboxylase 2 [Sinorhizobium meliloti BL225C] Length = 379 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++ VK N +I L G +F SV E Sbjct: 22 LVVDLDVVRDNFKAFRHALPDSAIYYAVKANP----APEILRLLAGLG-SNFDCASVAEI 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 + + L + +V K+ Sbjct: 77 EMALDAGATPNRISYGNTIKKERDVARAHALGISLFAVDSHEEVEKIARAAPGARVFC 134 >gi|257456760|ref|ZP_05621944.1| decarboxylase, pyridoxal-dependent family [Treponema vincentii ATCC 35580] gi|257445766|gb|EEV20825.1| decarboxylase, pyridoxal-dependent family [Treponema vincentii ATCC 35580] Length = 395 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 + I+L +K N+ + A VK N E++ L G Sbjct: 27 VVINLDRIKKNYLELKNFFSTADIYYAVKANP--H--EEVLKLLIELGAN 72 >gi|330891534|gb|EGH24195.1| ornithine decarboxylase [Pseudomonas syringae pv. mori str. 301020] Length = 371 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 96/344 (27%), Gaps = 34/344 (9%) Query: 10 KIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 +D + N + A+ K N E++ AL G+ F V S+ E Sbjct: 18 TVDPRWITRNAQQFSGCFPGTVLYAM-KANP----LEQVLEALSQGGINHFDVASLAEVQ 72 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD 129 + P A +++ + + SKL + Sbjct: 73 TVHNTLPDAVQYLMNPVKSRHCLHEAYYRYGVRSFVLDSEEELSKLRDVLPERDSTI--- 129 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPS---SHVNSVQLERFRTLI 186 + F R S A+ F + ++ +A + D S S Q + Sbjct: 130 SLFVRYAPSESTAVYDLRGKFGASPVLATQLVHQVASSTDWSLGLSFHVGSQALEDGPWL 189 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIR 246 + +A + ++ + + ++ G T + + + L Sbjct: 190 AALNDADAIVRDTAEHVRHLDIGGGFPGNYLNSMGNTPDLVGRVCDHIQTSPTLK-DLNL 248 Query: 247 KALAGELVSYG----GQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFI 302 AG + YG + L+R G G LS P + + Sbjct: 249 ICEAGRGLVYGGMSLFARVLSRREQSVFCGAGIFGGL---LSAQQWLQFP-----ARVWR 300 Query: 303 KGYMV--------PILGKIT--MDMTMFDITDSLSIEVGDYIQI 336 G I G MD F + + I D+++ Sbjct: 301 DGTPYTGAAENTFNIFGPTCDSMDRLAFPYSLASDIRESDWLEF 344 >gi|169608606|ref|XP_001797722.1| hypothetical protein SNOG_07385 [Phaeosphaeria nodorum SN15] gi|160701681|gb|EAT84851.2| hypothetical protein SNOG_07385 [Phaeosphaeria nodorum SN15] Length = 708 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 25/263 (9%) Query: 7 LRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 + +DL ++ N + L +K +A L +AG + V Sbjct: 355 PSMIVDLDLMEANIKKLMERLLPTGVNIRPHLKT----TKSALLAQRLVDAGAKGGCVAK 410 Query: 65 VEEGVKLRLYTPQARIFVLYGIHP------GQEKIIFDTNLIPVISSVPQLTFYSKLMSC 118 + E + + I + + I V S V +L Sbjct: 411 LSEAEVMCAKGFDDLLITCEIIGAPKVKRLAELFKKHKSIRIVVDSEVGARAINDELKKS 470 Query: 119 GVSHPYA--LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 GV A + +D G +R G+ E + + + + Sbjct: 471 GVDGRIAVLIDLDVGLHRTGIQPGEPALKLAACIAQLDHMALIGVQGY--------EGHL 522 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVV 236 + F + L S++ L + + G + S P V Sbjct: 523 QHVHSFEERKAKCLESMQILTSTANALREAGHQIDVVTTGGTGTAEFC---ISVPGVNEV 579 Query: 237 TAEARIILIRKALAGELVSYGGQ 259 + I + A +Y Sbjct: 580 QPGSFIFMDTDYRAAIGTTYSNS 602 >gi|269837390|ref|YP_003319618.1| alanine racemase domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786653|gb|ACZ38796.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM 20745] Length = 366 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 52/184 (28%), Gaps = 19/184 (10%) Query: 9 LKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L + + L+ N M A + +K +I AG F + Sbjct: 12 LVVHESILRRNVEEMAAFAREHGVAMRPHLKT----HKTAEITRMQREAGAIGFTCAKLG 67 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSV------PQLTFYSKLMSCGV 120 E L + + Y I Q+ + + +V + G Sbjct: 68 EAEALADAGVLDDVLLAYQIVGEQKIRRLLALMDRIKVTVAVDGVEGAAALSAACRDAGK 127 Query: 121 SHPYALQVDTGFNRLGLSLQE-------ALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + L+++TG +R G+ E + + ++ AD+ + Sbjct: 128 TLDVRLEINTGLDRAGVLPGEPALALAREVMQMPGLRLAGIMTHEGHVAKATNADELAEI 187 Query: 174 VNSV 177 + Sbjct: 188 ATAA 191 >gi|49475973|ref|YP_034014.1| ornithine decarboxylase [Bartonella henselae str. Houston-1] gi|49238781|emb|CAF28047.1| Ornithine decarboxylase [Bartonella henselae str. Houston-1] Length = 377 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL ++ N+ + +R +K N +I L + G F Sbjct: 13 HRSEGPCLIVDLDIIRENYLNFEKALPQSRIFYAIKANP----APEILNLLASLG-SSFD 67 Query: 62 VTSVEEGVKLRLYT 75 SV E Sbjct: 68 AASVAEIEMALKAG 81 >gi|209550966|ref|YP_002282883.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536722|gb|ACI56657.1| Orn/DAP/Arg decarboxylase 2 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 377 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL + +N+H+ ++ VK N ++ L G +F SV E Sbjct: 20 LVVDLDVISDNFHAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 75 EMALEAGATAARISFGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 132 >gi|330899492|gb|EGH30911.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940623|gb|EGH43657.1| alanine racemase [Pseudomonas syringae pv. pisi str. 1704B] gi|330976056|gb|EGH76122.1| alanine racemase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 378 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D++ +++N M R VK C + A AG V++++E Sbjct: 16 DVSRMQHNIQRMQQRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVTVSTLKEAE 71 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + E+ + I S + + Sbjct: 72 HCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVTAARAIVAFGQAHDERFDV 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++ + S G + A + ++Q Sbjct: 132 WIEIDCDGHRSGLTVDDPSLVEVASTLVDGGMQLRGVMTHAGSSYDLDTPAALQ 185 >gi|218462257|ref|ZP_03502348.1| probable ornithine decarboxylase protein [Rhizobium etli Kim 5] Length = 377 Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++ VK N ++ L G +F SV E Sbjct: 20 LVVDLDVVRDNFQAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 75 EMALDAGATAARISFGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 132 >gi|66046627|ref|YP_236468.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257334|gb|AAY38430.1| Alanine racemase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 378 Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D++ +++N M R VK C + A AG V++++E Sbjct: 16 DVSRMQHNIQRMQQRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVTVSTLKEAE 71 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + E+ + I S + Sbjct: 72 HCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQAHDERFDV 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++++ S G + A + ++Q Sbjct: 132 WIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLDTPAALQ 185 >gi|330972501|gb|EGH72567.1| alanine racemase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 378 Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D++ +++N M R VK C + A AG V++++E Sbjct: 16 DVSRMQHNIQRMQQRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVTVSTLKEAE 71 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + E+ + I S + Sbjct: 72 HCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQAHDERFDV 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++++ S G + A + ++Q Sbjct: 132 WIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLDTPAALQ 185 >gi|240851013|ref|YP_002972413.1| ornithine decarboxylase [Bartonella grahamii as4aup] gi|240268136|gb|ACS51724.1| ornithine decarboxylase [Bartonella grahamii as4aup] Length = 377 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL +++N+ + +R +K N +I L + G F Sbjct: 13 HRSEGPCLIVDLDVVRDNYLNFEKALPQSRIFYAIKANP----APEILRLLASLG-SSFD 67 Query: 62 VTSVEEGVKLRLYT 75 SV E Sbjct: 68 AASVAEIEMALKAG 81 >gi|302188653|ref|ZP_07265326.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae 642] Length = 378 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D++ +++N M R VK C + A AG V++++E Sbjct: 16 DVSRMQHNIQRMQQRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVTVSTLKEAE 71 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + E+ + I S + Sbjct: 72 HCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIVVFGQAHDERFDV 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++ + G + A + ++Q Sbjct: 132 WIEIDCDGHRSGLTVDDPSLIEVARTLVDGGMQLRGVMTHAGSSYDLDTPAALQ 185 >gi|327394996|dbj|BAK12418.1| hypothetical protein PAJ_2338 [Pantoea ananatis AJ13355] Length = 423 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 11/96 (11%) Query: 14 TALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALY-----NAGVQDFFVTSVEEG 68 +AL+NN + A G +APA+ G + + Sbjct: 55 SALENNLRQLAAFCQEKGVMLAA------HGKTSMAPAVLRRAVTQGGAWGISAATPAQV 108 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104 LR + + + PG + I + Sbjct: 109 RALRHFGIRNVFLANECVDPGGIRWIGEWQRRHPDH 144 >gi|146340130|ref|YP_001205178.1| putative amino acid processing-like protein [Bradyrhizobium sp. ORS278] gi|146192936|emb|CAL76943.1| putative amino acid processing enzyme-related protein (aldolase or racemase) [Bradyrhizobium sp. ORS278] Length = 359 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 12/151 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID+ ++ N + A A A +K +A AG Q + Sbjct: 18 AVIDMDKVERNIARIQAQCAAAGVANRPHIKT----HKSPVLAKLQIEAGAQGITCQKIG 73 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-----SKLMSCGVS 121 E + + I + + ++ G + Sbjct: 74 EAEIMADAGINNILISYNLIGEEKMARLAALQAKADMTVAADNATVIAGLPQAAKQSGRT 133 Query: 122 HPYALQVDTGFNRLGL-SLQEALDFTHNSFN 151 ++ DTG R G+ + EA+ Sbjct: 134 LSVVVECDTGRKRAGVETPAEAIQLARQIKA 164 >gi|86750314|ref|YP_486810.1| alanine racemase-like [Rhodopseudomonas palustris HaA2] gi|86573342|gb|ABD07899.1| Alanine racemase-like [Rhodopseudomonas palustris HaA2] Length = 360 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L ID+ ++ N + L A A +K +A AG + + Sbjct: 18 LVIDMDRVERNIARVQGLCDAAGVANRPHIKT----HKSPLLAQMQIKAGARGITCQKLG 73 Query: 67 EGVKLRLYTPQ 77 E + Sbjct: 74 EAEVMAEAGID 84 >gi|83816534|ref|YP_446532.1| metal-activated pyridoxal enzyme [Salinibacter ruber DSM 13855] gi|83757928|gb|ABC46041.1| metal-activated pyridoxal enzyme [Salinibacter ruber DSM 13855] Length = 388 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 11/138 (7%) Query: 9 LKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L I+ + L+ N +M A + + VK IA G + V +V Sbjct: 11 LLIEQSRLQENLAAMQATADANDVTLRPHVKT----HKSVAIAEQQQQRGAEGLTVATVH 66 Query: 67 EGVKLRLYTPQARIFVLY--GIHPGQ---EKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 E G + T V + + Sbjct: 67 EAETFVAAGFDDVRVAYPVVGRPKHERLRALRAAATLSFTVDTMAGADQASAVYAGADNP 126 Query: 122 HPYALQVDTGFNRLGLSL 139 ++VD G R G+ Sbjct: 127 VEVLMEVDVGHGRCGVHW 144 >gi|319643960|ref|ZP_07998535.1| outer membrane protein [Bacteroides sp. 3_1_40A] gi|317384484|gb|EFV65451.1| outer membrane protein [Bacteroides sp. 3_1_40A] Length = 500 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 337 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 379 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 380 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 439 Query: 123 PYAL 126 Sbjct: 440 KPDF 443 >gi|265756011|ref|ZP_06090478.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234089|gb|EEZ19690.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 496 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 333 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 375 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 376 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 435 Query: 123 PYAL 126 Sbjct: 436 KPDF 439 >gi|254882734|ref|ZP_05255444.1| RagB, SusD domain-containing protein [Bacteroides sp. 4_3_47FAA] gi|254835527|gb|EET15836.1| RagB, SusD domain-containing protein [Bacteroides sp. 4_3_47FAA] Length = 269 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 106 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 148 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 149 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 208 Query: 123 PYAL 126 Sbjct: 209 KPDF 212 >gi|237708718|ref|ZP_04539199.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457144|gb|EEO62865.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 485 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 322 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 364 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 365 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 424 Query: 123 PYAL 126 Sbjct: 425 KPDF 428 >gi|237724166|ref|ZP_04554647.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437354|gb|EEO47431.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 496 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 333 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 375 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 376 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 435 Query: 123 PYAL 126 Sbjct: 436 KPDF 439 >gi|212693559|ref|ZP_03301687.1| hypothetical protein BACDOR_03076 [Bacteroides dorei DSM 17855] gi|212663812|gb|EEB24386.1| hypothetical protein BACDOR_03076 [Bacteroides dorei DSM 17855] Length = 500 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 337 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 379 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 380 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 439 Query: 123 PYAL 126 Sbjct: 440 KPDF 443 >gi|150004529|ref|YP_001299273.1| hypothetical protein BVU_1979 [Bacteroides vulgatus ATCC 8482] gi|294778288|ref|ZP_06743714.1| putative lipoprotein [Bacteroides vulgatus PC510] gi|149932953|gb|ABR39651.1| putative outer membrane protein, probably involved in nutrient binding [Bacteroides vulgatus ATCC 8482] gi|294447916|gb|EFG16490.1| putative lipoprotein [Bacteroides vulgatus PC510] Length = 496 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%) Query: 14 TALKNNWHSMNALSGNARTAAV----------VKDNAYGLGCEKIAPALYNAGVQDFFVT 63 +A+ N S+ L +A V +K ALY +G Sbjct: 333 SAVAYNLKSVKKLLNDANDMPVIFSRVSELYLIKA-----------EALYRSG------A 375 Query: 64 SVEEGVK-LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH 122 S+ E +R +A ++ + + + + +S +++ + G + Sbjct: 376 SISEAYAPIRKLRERAGAEIILPANNEELETAIFNEWMLELSFENWHEWFAMIRFAGYTE 435 Query: 123 PYAL 126 Sbjct: 436 KPDF 439 >gi|187920497|ref|YP_001889529.1| alanine racemase domain-containing protein [Burkholderia phytofirmans PsJN] gi|187718935|gb|ACD20158.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN] Length = 355 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 38/131 (29%), Gaps = 5/131 (3%) Query: 48 IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPV 102 + A AG + V++++E ++ + + + + V Sbjct: 24 VVRAQIAAGARGITVSTLKEAEAFFAAGVDDILYAVSMVPSKLPRALALRRQGCNLKLVV 83 Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162 + + G + ++VDT +R G++ ++ G + Sbjct: 84 DNPTAASAIAAFGDQHGETFEVWIEVDTDGHRSGITPEQDTLLEVGRILHDNGVEVGGVM 143 Query: 163 HLACADDPSSH 173 A + Sbjct: 144 THAGSSYELDT 154 >gi|271500712|ref|YP_003333737.1| alanine racemase domain-containing protein [Dickeya dadantii Ech586] gi|270344267|gb|ACZ77032.1| alanine racemase domain protein [Dickeya dadantii Ech586] Length = 423 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 11/96 (11%) Query: 14 TALKNNWHSMNALSGNARTAAVVKDNAYGLG-----CEKIAPALYNAGVQDFFVTSVEEG 68 +AL+NN + A G + A+ G + + Sbjct: 55 SALENNLRQLAAFCRERGVMLAA------HGKTSMSATVLRRAITEGGAWGISAATPAQV 108 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVIS 104 LR + + + P + I Sbjct: 109 RALRHFGIRNVFLANQLVDPAGIRWIAQWQQQHPDH 144 >gi|302528756|ref|ZP_07281098.1| predicted protein [Streptomyces sp. AA4] gi|302437651|gb|EFL09467.1| predicted protein [Streptomyces sp. AA4] Length = 343 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 6/83 (7%) Query: 16 LKNNWHS--MNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRL 73 ++ N + A VK G ++A AG V + E + Sbjct: 12 VERNIERYHARFKCSSVALRAHVK----GHRTVELARFQEAAGASGIAVHTTAEARRYLA 67 Query: 74 YTPQARIFVLYGIHPGQEKIIFD 96 + I P + D Sbjct: 68 SGITDIVLAWPLISPERWSFFAD 90 >gi|332715985|ref|YP_004443451.1| ornithine decarboxylase [Agrobacterium sp. H13-3] gi|325062670|gb|ADY66360.1| ornithine decarboxylase [Agrobacterium sp. H13-3] Length = 377 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+++ N+ VK N +I L + G +F SV E Sbjct: 20 LVVDLDVVRDNFNAFRHSLPNSAIYYAVKANP----APEILKLLASLG-SNFDCASVAE 73 >gi|284046325|ref|YP_003396665.1| alanine racemase domain protein [Conexibacter woesei DSM 14684] gi|283950546|gb|ADB53290.1| alanine racemase domain protein [Conexibacter woesei DSM 14684] Length = 386 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 11/82 (13%) Query: 1 MHSNEFLRLK-----IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALY 53 M L+ +DL AL+ N A + +K +A Sbjct: 1 MIGQPVAELETPAVVVDLGALERNVARAGAYAREHGLALWPHLKT----HKTVAVAERQR 56 Query: 54 NAGVQDFFVTSVEEGVKLRLYT 75 AGV F E + + Sbjct: 57 AAGVAGFTAAKTTEAERFAAHG 78 >gi|159185643|ref|NP_357406.2| ornithine decarboxylase [Agrobacterium tumefaciens str. C58] gi|159140777|gb|AAK90191.2| ornithine decarboxylase [Agrobacterium tumefaciens str. C58] Length = 377 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+++ N+ VK N +I L + G +F SV E Sbjct: 20 LVVDLDVVRDNFNAFRHSLPNSAIYYAVKANP----APEILKLLASLG-SNFDCASVAE 73 >gi|255078594|ref|XP_002502877.1| predicted protein [Micromonas sp. RCC299] gi|226518143|gb|ACO64135.1| predicted protein [Micromonas sp. RCC299] Length = 486 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA-AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L ++ +++N ++ G +K + + L GV++F V + +E Sbjct: 38 LIVNEAHVRHNVKTIIGKCGRPDRWRPHLKT----TKMKWVWRILIEEGVRNFKVATTKE 93 Query: 68 GVKL 71 + Sbjct: 94 AEAM 97 >gi|170694158|ref|ZP_02885313.1| pyridoxal-dependent decarboxylase, exosortase system type 1 associated [Burkholderia graminis C4D1M] gi|170140898|gb|EDT09071.1| pyridoxal-dependent decarboxylase, exosortase system type 1 associated [Burkholderia graminis C4D1M] Length = 402 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 48/356 (13%), Positives = 94/356 (26%), Gaps = 42/356 (11%) Query: 8 RLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 R ID + +L +K N + L A V F V S + Sbjct: 36 RAAIDTR-----IRELRSLLPPGVHLHYSIKANP----MPAVVHYL-AARVDGFDVASAQ 85 Query: 67 E-GVKLRL-YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-----FYSKLMSCG 119 E V L P F G + + + + S QL + + G Sbjct: 86 EMAVALNAGAAPADIGFAGPGKSYDDLRRAISSGVNVHVESETQLRLVTALGWELGVQPG 145 Query: 120 VSHPYALQVDTGFNRLGLSLQ------EALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 V+ + G + + + + + Q++L H+ Sbjct: 146 VAIRINPDFEVGRSGMRMGGGAAPFGVDVDQVPALLRELQARQVALAGFHIFWGSQCLDA 205 Query: 174 VNSVQLERFR----TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKS 229 +Q +R ++ + G P +F P + Sbjct: 206 ATVIQAQRQSADLVARLARGLSEPPRFVNLGGGFGIP--YFPGETPLNVQAVCEAMHDWL 263 Query: 230 HPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSE 289 + V+ I+ + + L GE + + R + G L+ Sbjct: 264 PRLCERVSGMTPILELGRYLVGE-AGIYVCRVIDRKVSRGRTFVITDGGLHHHLA-ASGN 321 Query: 290 HSPSVFLGGKGFIKG-------YMVPILGKIT--MDMTMFDITDSLSIEVGDYIQI 336 + I ++G + +D DI + +GD + + Sbjct: 322 FGQVLRRNFPVVIGNRPDGVPQQRCHVVGCLCTPLDRLADDI-ELPEAHIGDLVVV 376 >gi|54295359|ref|YP_127774.1| hypothetical protein lpl2444 [Legionella pneumophila str. Lens] gi|53755191|emb|CAH16684.1| hypothetical protein lpl2444 [Legionella pneumophila str. Lens] Length = 376 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 54/195 (27%), Gaps = 27/195 (13%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L ID LK N M + + +T C +IA G Sbjct: 18 LVIDYEKLKYNLKMMQQHGFKWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 67 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSC 118 + E L + + + +F++ V L Sbjct: 68 SAAKLSEAEVLVSKQITNVLITSPIVSEAKYSRLFNSLKSAPDLMLVVDGKDNIRMLNEL 127 Query: 119 GVSHPYALQ----VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G S + +D+G R G++ + AL++ H +L I A Sbjct: 128 GKSLNQPVYVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGIQC---YAGHLQHIQ 184 Query: 175 NSVQLERFRTLISHY 189 N + + F I Sbjct: 185 NYEERKAFSLRIMEM 199 >gi|110634377|ref|YP_674585.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium sp. BNC1] gi|110285361|gb|ABG63420.1| Orn/DAP/Arg decarboxylase 2 [Chelativorans sp. BNC1] Length = 406 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 15/66 (22%) Query: 35 VVKDNAYGL---------------GCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQAR 79 V+K +A G G + L AGV F V S E +R P A Sbjct: 27 VLKADARGFMGLFPGKTAYAVKTNGEPLVLKTLAEAGVTAFDVASPAEFAAVRAVAPSAE 86 Query: 80 IFVLYG 85 + ++ Sbjct: 87 MLYMHP 92 >gi|311103295|ref|YP_003976148.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans A8] gi|310757984|gb|ADP13433.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans A8] Length = 379 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%) Query: 12 DLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DLTA + N +M A + A K C +IA G + V E + Sbjct: 32 DLTAFEANLRAMQAWADRHEVALRPHAKA----HKCPQIALRQLALGARGICCQKVSEAL 87 Query: 70 KLRLYTPQ 77 + Sbjct: 88 PFVAAGIR 95 >gi|170736332|ref|YP_001777592.1| alanine racemase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818520|gb|ACA93102.1| alanine racemase domain protein [Burkholderia cenocepacia MC0-3] Length = 376 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 11/147 (7%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 +H+ ID+ ++ N M + R VK C+++ A AG Q Sbjct: 3 LHTLNTPAALIDVAHMQRNIARMQTHLDALGVRFRPHVKT----TKCQQVVDAQIAAGAQ 58 Query: 59 DFFVTSVEEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYS 113 V++++E + + ++ + + + I S + Sbjct: 59 GITVSTLKEAEQFFADGIRDIVYAVGMVPAKLGQALALRRQGCDLKIVADSLPAAHAIAA 118 Query: 114 KLMSCGVSHPYALQVDTGFNRLGLSLQ 140 G ++VD +R G+ Sbjct: 119 FGREHGERFDVWIEVDVDGHRSGIPPD 145 >gi|256379655|ref|YP_003103315.1| Orn/DAP/Arg decarboxylase 2 [Actinosynnema mirum DSM 43827] gi|255923958|gb|ACU39469.1| Orn/DAP/Arg decarboxylase 2 [Actinosynnema mirum DSM 43827] Length = 397 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL + + ++ A VK N ++ L G F V S E Sbjct: 39 LVIDLPTVVERFRALRAALPGVGIFYAVKANP----TREVVEVLAAEGC-CFDVASPNE 92 >gi|319782827|ref|YP_004142303.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168715|gb|ADV12253.1| Orn/DAP/Arg decarboxylase 2 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 406 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 31 RTAAVVKDNAYGLGCEKIA-PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 +TA VK N E+I L AGV+ F V S E +R +P A + ++ Sbjct: 42 KTAYAVKTNG-----EQIVLKTLVEAGVKAFDVASPGEFAAVRAVSPDAEMLYMHP 92 >gi|150021213|ref|YP_001306567.1| Orn/DAP/Arg decarboxylase 2 [Thermosipho melanesiensis BI429] gi|149793734|gb|ABR31182.1| Orn/DAP/Arg decarboxylase 2 [Thermosipho melanesiensis BI429] Length = 386 Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 5/123 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +K N+ + N+R VK N+ +I L + G F V S E Sbjct: 22 LVMDLNIVKANYEKLIDNVRNSRVYYAVKANS--H--IEILKLLRDLG-SYFDVASRPEI 76 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KL + + I F N + +V K+ +++ Sbjct: 77 EKLLSIGVEPERMSFGNTIKKTKDISFAYNNGIRMFAVDSEMEIEKIADNAPGSDIYVRI 136 Query: 129 DTG 131 T Sbjct: 137 STN 139 >gi|163868811|ref|YP_001610035.1| lysine/ornithine decarboxylase [Bartonella tribocorum CIP 105476] gi|161018482|emb|CAK02040.1| lysine/ornithine decarboxylase [Bartonella tribocorum CIP 105476] Length = 377 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDN 39 H +E L +DL +++N+ + +R +K N Sbjct: 13 HRSEGPCLIVDLDVVRDNYLNFKKALPQSRIFYAIKAN 50 >gi|116253893|ref|YP_769731.1| lysine/ornithine decarboxylase [Rhizobium leguminosarum bv. viciae 3841] gi|115258541|emb|CAK09645.1| putative lysine/ornithine decarboxylase [Rhizobium leguminosarum bv. viciae 3841] Length = 377 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 5/118 (4%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ + ++ VK N ++ L G +F SV E Sbjct: 20 LVVDLDVVRDNFDAFRHAMPDSAIYYAVKANP----APEVLKLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 A + + L + +V K+ Sbjct: 75 EMALEAGATAARISYGNTIKKERDVARAHALGVSLFAVDSHEEVEKISRAAPGARVFC 132 >gi|121603426|ref|YP_980755.1| putative threonine aldolase [Polaromonas naphthalenivorans CJ2] gi|120592395|gb|ABM35834.1| putative threonine aldolase [Polaromonas naphthalenivorans CJ2] Length = 396 Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 28/119 (23%), Gaps = 18/119 (15%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALY 53 H + L ID+ ALK N M + +A+ +A Sbjct: 17 HDIDTPALVIDMDALKRNLVRMADFAKKHHVRWRPHAKL----------HKSTVLAKMQI 66 Query: 54 NAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY 112 AG V E + I P + + Q+ Sbjct: 67 KAGAAGVCVQKTAEAEVMVAGGIYNVYISNQVIAPAKLARVAALTQAVASHRGGQIAIA 125 >gi|13471573|ref|NP_103139.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099] gi|14022315|dbj|BAB48925.1| ornithine decarboxylase [Mesorhizobium loti MAFF303099] Length = 406 Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 31 RTAAVVKDNAYGLGCEKIA-PALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 +TA VK N E+I L AGV F V S E +R +P A + ++ Sbjct: 42 KTAYAVKTNG-----EQIVLKTLVEAGVTAFDVASPGEFAAVRAVSPDAEMLYMHP 92 >gi|13124043|sp|O50657|DCLO_SELRU RecName: Full=Lysine/ornithine decarboxylase; Short=LDC gi|2897824|dbj|BAA24923.1| lysine/ornithine decarboxylase [Selenomonas ruminantium] gi|28804806|dbj|BAC57940.1| lysine decarboxylase [Selenomonas ruminantium] Length = 393 Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 38/342 (11%), Positives = 91/342 (26%), Gaps = 42/342 (12%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 L ++ N+ M A +K N +I L G F V S E L Sbjct: 26 SLDKVEENYQFMRRHLPRAGVFYAMKANP----TPEILSLLAGLG-SHFDVASAGEMEIL 80 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + + + + + K+ +++ Sbjct: 81 HELGVDGSQMIYANPVKDARGLKAAADYNVRRFTFDDPSEIDKMAKAVPGADVLVRIAVR 140 Query: 132 FN--------RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 N + G ++EALD + + L + + + + +++ ++ + R Sbjct: 141 NNKALVDLNTKFGAPVEEALDLLKAAQDAGLHAMGICFHVGSQSLSTAAYEEALLVARRL 200 Query: 184 TLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVT-----A 238 + G+ + G P+ + +I++ P V T Sbjct: 201 FDEAEEMGMHLTDLDIGGGFPVPDAKGLNVDLAAMMEAINKQIDRLFPDTAVWTEPGRYM 260 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + + ++ G + + + + D + L + GG Sbjct: 261 CGTAVNLVTSVIGTKTRGEQPWYILDEGIYGCFSGIMYDHWTYPLHCFGKGNKKPSTFGG 320 Query: 299 K------GFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYI 334 + M + +++GD + Sbjct: 321 PSCDGIDVLYRD-------------FM-----APELKIGDKV 344 >gi|293602765|ref|ZP_06685205.1| threonine aldolase [Achromobacter piechaudii ATCC 43553] gi|292818781|gb|EFF77822.1| threonine aldolase [Achromobacter piechaudii ATCC 43553] Length = 379 Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 6/73 (8%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DLT + N +M A + A K C +IA G + Sbjct: 27 PSLVLDLTPFEANLRAMQAWADRHEVALRPHAKA----HKCPEIARRQLALGARGICCQK 82 Query: 65 VEEGVKLRLYTPQ 77 V E + Sbjct: 83 VSEALPFVAAGIH 95 >gi|327539588|gb|EGF26197.1| alanine racemase domain protein [Rhodopirellula baltica WH47] Length = 368 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 15/189 (7%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 ++ N M ++G A + VK I +G+ F ++ E Sbjct: 17 DRVQANLDRMIEMAGGAYKLRPHVKT----HKMPAIVELSIASGITRFKSATIAEAEMTA 72 Query: 73 LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-------SKLMSCGVSHPYA 125 + + + P + + P + + + G+ Sbjct: 73 EAGAVDVLLAVQPVGPNIGRFVKLIQRYPGCAFSCLVDDLSVLASLEAAFELAGLRGSVW 132 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + +D G +R G++ ++ S + ++ + D +S +L R Sbjct: 133 IDIDVGMHRTGIAPNDSATELVRSIQTSDH---VRLAGIHVYDGHLHDTDSEKLRRQFDE 189 Query: 186 ISHYKGIEA 194 I Sbjct: 190 AVKPFWIWF 198 >gi|91778101|ref|YP_553309.1| metal-activated pyridoxal protein [Burkholderia xenovorans LB400] gi|91690761|gb|ABE33959.1| Metal-activated pyridoxal enzyme [Burkholderia xenovorans LB400] Length = 379 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 17/173 (9%) Query: 11 IDLTALKNNWHSMNALSGNARTAAV-----VKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 ID+ ++ N M G+ T V VK C + A AG + V+++ Sbjct: 13 IDIARMQKNIARMQ---GHMNTLGVAFRPHVKT----TKCIDVVRAQIAAGARGITVSTL 65 Query: 66 EEGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 +E + ++ + + + V + + G Sbjct: 66 KEAEAFFAAGVEDILYAVSMAPSKLPRALALRRQGCDLKLVVDNPNAAAAIAAFSDQHGQ 125 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 + ++VDT +R G++ ++ + G + A + Sbjct: 126 TFEVCIEVDTDGHRSGITPEQDTLLEVGRILHENGVKVGGVMTHAGSSYELDT 178 >gi|78063401|ref|YP_373309.1| alanine racemase-like [Burkholderia sp. 383] gi|77971286|gb|ABB12665.1| Alanine racemase-like protein [Burkholderia sp. 383] Length = 359 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 13/165 (7%) Query: 17 KNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74 ++N M A + R VK C ++ A AG Q V++++E + + Sbjct: 2 RHNIGRMQAHLDALGVRFRPHVKT----TKCTQVVDAQLAAGAQGITVSTLKEAEQFFAH 57 Query: 75 TPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSHPYALQV 128 + ++ + G+ P + S + G ++V Sbjct: 58 GIRDIVYAV-GMVPAKLGQALALRRQGCDLKLVADSLPAAHAIAEFGRAHGERFDVWIEV 116 Query: 129 DTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSH 173 D +R G+ L G + + A + Sbjct: 117 DVDGHRSGIPPDADLLIDVGRALFDGGMMLGGVLAHAGSSYEYDT 161 >gi|319404654|emb|CBI78256.1| lysine/ornithine decarboxylase [Bartonella rochalimae ATCC BAA-1498] gi|319404673|emb|CBI78275.1| lysine/ornithine decarboxylase [Bartonella rochalimae ATCC BAA-1498] Length = 377 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 5/164 (3%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL + N+ + +R +K N +I L + G F Sbjct: 13 HRSEGPCLVVDLDVVHENYLNFEKALPQSRIFYAIKANP----APEILRLLVSLG-SFFD 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 SV E A + I L + ++ K+ Sbjct: 68 AASVAEIEMALAAGATANRISFGNTIKKERDIARAHALGISLYAIDCFEEVEKVARAAPG 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165 +V T L + + L + Sbjct: 128 ARVFCRVLTDGEGAEWPLSQKFGCVPSMAVDVLRYAHHLGLQAH 171 >gi|149909881|ref|ZP_01898531.1| metal-activated pyridoxal enzyme [Moritella sp. PE36] gi|149807046|gb|EDM67004.1| metal-activated pyridoxal enzyme [Moritella sp. PE36] Length = 363 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 49/184 (26%), Gaps = 24/184 (13%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L ID L +N +M + +A+T C +I +AG Sbjct: 14 LVIDKRKLMHNIETMQKFAAAKSKHVRPHAKT----------HKCVEICQLQLDAGSIGI 63 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTN------LIPVISSVPQLTFYSK 114 +T E +L + + + + + +I V S Sbjct: 64 SITKPSEAYELAKAHIRHLLITSPIVTKHKLATLAKIIKLAPETMIVVDSETNLTQLNQL 123 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + +D G R G S + A D + L I + + Sbjct: 124 GSELNQRINLVVDIDAGIGRTGASFETAFDLALSVHRNANTTLKGIQCYAGHFQHILDNE 183 Query: 175 NSVQ 178 Q Sbjct: 184 ERKQ 187 >gi|86609204|ref|YP_477966.1| hypothetical protein CYB_1746 [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557746|gb|ABD02703.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 227 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 20 WHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 ++ A + AV K G + I A Y AG++ F + V+E Sbjct: 12 IQAIRAQIPDHVEIMAVSK----GYSADHI-RAAYRAGIRHFGESRVQEAA 57 >gi|296532599|ref|ZP_06895304.1| alanine racemase domain protein [Roseomonas cervicalis ATCC 49957] gi|296267090|gb|EFH13010.1| alanine racemase domain protein [Roseomonas cervicalis ATCC 49957] Length = 352 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 6/73 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL ++ N M A + A +K +A G + + E Sbjct: 13 IDLDVVEANLARMQAYCDSHGIALRPHIKT----HKLPALARRQVELGARGITCQKLGEA 68 Query: 69 VKLRLYTPQARIF 81 + + Sbjct: 69 EVMVEAGIDDILM 81 >gi|86605564|ref|YP_474327.1| hypothetical protein CYA_0860 [Synechococcus sp. JA-3-3Ab] gi|86554106|gb|ABC99064.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. JA-3-3Ab] Length = 224 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%) Query: 20 WHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 ++ A + AV K Y A Y AG++ F + V+E Sbjct: 9 IQAIRAQIPEHVEIMAVSK--GY---SVNHIRAAYRAGIRHFGESRVQEAAA 55 >gi|320535387|ref|ZP_08035501.1| pyridoxal-dependent decarboxylase, pyridoxal binding domain protein [Treponema phagedenis F0421] gi|320147789|gb|EFW39291.1| pyridoxal-dependent decarboxylase, pyridoxal binding domain protein [Treponema phagedenis F0421] Length = 389 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 4/50 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQ 58 + I+L +K N+ + L +A +K N E+I L G Sbjct: 27 VIINLEKIKKNYLELKQLFPDADIYYAMKANP--H--EEILKLLIGLGAN 72 >gi|307297673|ref|ZP_07577479.1| Orn/DAP/Arg decarboxylase 2 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916933|gb|EFN47315.1| Orn/DAP/Arg decarboxylase 2 [Thermotogales bacterium mesG1.Ag.4.2] Length = 387 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +D+ ++NN+ + + N + VK N+ +I L + G +F V S E Sbjct: 19 LIMDMDYVRNNYFDIVSHVRNVQVFYAVKANS--H--PRIIETLRDLG-SNFDVASRGEI 73 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 KL E I + ++ +V K+ + ++ Sbjct: 74 EKLLALGISPERMSFGNTIKKVEDIAYAYSVGIDYYAVDSEMEVEKIAAHAPGSKVYGRI 133 Query: 129 DTGFNRLGLS 138 T Sbjct: 134 ATSGGDCDWP 143 >gi|27379075|ref|NP_770604.1| hypothetical protein bll3964 [Bradyrhizobium japonicum USDA 110] gi|27352225|dbj|BAC49229.1| bll3964 [Bradyrhizobium japonicum USDA 110] Length = 359 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 6/71 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 ID+ ++ N + A A +K IA AG + + Sbjct: 18 AVIDMDKVERNIARIQKACDEAGVANRPHIKT----HKNPTIAKMQIAAGAKGITCQKLG 73 Query: 67 EGVKLRLYTPQ 77 E + Sbjct: 74 EAEIMANAGID 84 >gi|170288742|ref|YP_001738980.1| Orn/DAP/Arg decarboxylase 2 [Thermotoga sp. RQ2] gi|170176245|gb|ACB09297.1| Orn/DAP/Arg decarboxylase 2 [Thermotoga sp. RQ2] Length = 388 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 80/286 (27%), Gaps = 18/286 (6%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL+ ++ + M A A VK N+ +I L G +F V S E KL Sbjct: 21 DLSVVEKKYLEMKAALKKADIYYAVKANS--H--PRIISLLARLG-SNFDVASKGEIEKL 75 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + +E I F + +V K+ ++V+T Sbjct: 76 LALGVDGKRMSFGNTIKREEDIAFAYKNGIRLFAVDSEMEVEKVAINAPGSFVFVRVETD 135 Query: 132 FNRLGL--------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL--ER 181 + + AL + KL L + +P S ++++ Sbjct: 136 GADADWPLSRKFGTNPEHALQLLSYASKMKLIPAGLSFHVGSQNLNPESWKKAIEIAGRV 195 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F+ + + + + G + I+++ + A Sbjct: 196 FKKAMRSGLNLFLLNVGGGFPVQHTKPIPSMEEIGK---AIEEAIDENLWFVHNLRVIAE 252 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 AG LV+ K G G T+ + Sbjct: 253 PGRYMVGEAGWLVTKVLLKSERSGEKWVYIDAGVFHGLAETIQNFE 298 >gi|319407636|emb|CBI81285.1| lysine/ornithine decarboxylase [Bartonella sp. 1-1C] Length = 377 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 42/164 (25%), Gaps = 5/164 (3%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 H +E L +DL + N+ + +R +K N +I L + G F Sbjct: 13 HRSEGPCLVVDLDVVHENYLNFEKALPQSRIFYAIKANP----APEILRLLVSLG-SSFD 67 Query: 62 VTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 SV E A + I L + +V K+ Sbjct: 68 AASVAEIEMALAAGATANRISFGNTIKKERDIARAHALGISLYAVDCFEEVEKVARAAPG 127 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLA 165 +V T L + + L + Sbjct: 128 ARVFCRVLTDGEGAEWPLSQKFGCVPSMAVDVLRYAHHLGLQAH 171 >gi|110635049|ref|YP_675257.1| ornithine decarboxylase [Mesorhizobium sp. BNC1] gi|110286033|gb|ABG64092.1| ornithine decarboxylase [Chelativorans sp. BNC1] Length = 377 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N +I L + G F SV E Sbjct: 20 LVVDLDVVRDNYLAFERALPDSRIYYAVKANP----APQILRLLTSLG-SSFDTASVAE 73 >gi|237748340|ref|ZP_04578820.1| amino acid racemase [Oxalobacter formigenes OXCC13] gi|229379702|gb|EEO29793.1| amino acid racemase [Oxalobacter formigenes OXCC13] Length = 357 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 59/211 (27%), Gaps = 19/211 (9%) Query: 6 FLRLKIDLTALKNNWHSMNALSGN--------ARTAAVVKDNAYGLGCEKIAPALYNAGV 57 + +D LK+N+ +N L ++ G L GV Sbjct: 1 MAYITLDRNKLKHNYDYLNRLFDGNGISWSVVSKLLC-------GH--PLFLEELRKLGV 51 Query: 58 QDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM- 116 + + ++ P + I I + L S Sbjct: 52 TRICDSRMANIKAIKKIAPDIETMCIRPPALRAIPDIVRYADISFNTEYATLEKLSAEAS 111 Query: 117 SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 G H + ++ G R G+ + L + + + ++L+C + Sbjct: 112 RQGKVHQVIIMIELGELREGVLRDDVLPIYEKTLTLPHIDIVGVGTNLSCLSGILPDYDK 171 Query: 177 V-QLERFRTLISHYKGIEASLASSSGILLGP 206 + QL +R L+ G S + P Sbjct: 172 LNQLCLYRDLLHAKFGKAIPYVSGGTSVTIP 202 >gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae] gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae] Length = 215 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 8/199 (4%), Positives = 28/199 (14%), Gaps = 9/199 (4%) Query: 79 RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD----TGFNR 134 + + + H + Sbjct: 3 TCIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIF 62 Query: 135 LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG--- 191 + + + + C + + H+ Sbjct: 63 TCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIF 122 Query: 192 --IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILIRKAL 249 I + + + +G ++ + T + I Sbjct: 123 TCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWC 182 Query: 250 AGELVSYGGQKKLTRDSLI 268 G + Sbjct: 183 WGIFTCVHWCWGIFTCIHW 201 >gi|330960246|gb|EGH60506.1| hypothetical protein PMA4326_16961 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 367 Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D+ ++ N M R VK + A AG V++++E Sbjct: 5 DVPRMQRNIRRMQQRMNELGVRLRPHVKT----SKSLPVIQAQIAAGATGVTVSTLKEAE 60 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIF-----DTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + + ++ I S V + Sbjct: 61 HCFAEGIEDVFYAVAIAPGKLDQAFRLRRNGCRLSILTDSVVAAQAIVAFGQQHDERFEV 120 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL+++++ G + A + ++Q Sbjct: 121 WIEIDCDGHRSGLAVEDSALIDVAKTLVDGGMQLRGVMTHAGSSYDLDTPEALQ 174 >gi|54309885|ref|YP_130905.1| hypothetical protein PBPRA2731 [Photobacterium profundum SS9] gi|46914324|emb|CAG21103.1| hypothetical protein PBPRA2731 [Photobacterium profundum SS9] Length = 355 Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 11/82 (13%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGL-----GCEKIAPALYNAGVQD 59 ++ L I+L ++NN + L N V G+ G E I A+ G+Q Sbjct: 2 QYPSLSINLRIIENNTRELVQLCCNKGIIPV------GITKLVEGSEPIVRAMIFGGIQT 55 Query: 60 FFVTSVEEGVKLRLYTPQARIF 81 T ++ +KL+ + + Sbjct: 56 IGDTQIQNLMKLKDLPIRKMLL 77 >gi|269129052|ref|YP_003302422.1| Orn/DAP/Arg decarboxylase 2 [Thermomonospora curvata DSM 43183] gi|268314010|gb|ACZ00385.1| Orn/DAP/Arg decarboxylase 2 [Thermomonospora curvata DSM 43183] Length = 373 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 77/320 (24%), Gaps = 33/320 (10%) Query: 12 DLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 DL AL+ + ++ L+G K N +I V V S E Sbjct: 19 DLGALREHVAAIRKALTGGPELFYAAKANP----DAEILKT-VAPYVDGIEVASGGELKH 73 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDT 130 +R P+AR + +G ++ + V S+L G L+V+ Sbjct: 74 VRAVLPKAR--LAFGGPGKTDEELALAVREAERVHVESPHELSRLARIGRDVDVLLRVNL 131 Query: 131 GFNR--------LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERF 182 R + + + L H A + Q E Sbjct: 132 AGERKGVALAMSGPFGMDPEAIEACHEILAGAPWVRLRGIHAHLASGLEAEALVRQSEEI 191 Query: 183 RTLISHYKGIEASLASS--------SGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + + P+ F T G + Sbjct: 192 LQWARPWLEKTGCTQNPEFNLGGGMAVDYTDPHRRFDWTTYGRQIAALAQPGEI------ 245 Query: 235 VVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSV 294 AG V+ K AV G + + Sbjct: 246 ---LRIEPGRAVTVYAGWYVTQVLDVKKAHGQWYAVLRGGTHHIRTPVTKNHNQPFTVLP 302 Query: 295 FLGGKGFIKGYMVPILGKIT 314 + G V ++G++ Sbjct: 303 RGEQGPAVNGAEVTLVGQLC 322 >gi|153011560|ref|YP_001372774.1| Orn/DAP/Arg decarboxylase 2 [Ochrobactrum anthropi ATCC 49188] gi|151563448|gb|ABS16945.1| Orn/DAP/Arg decarboxylase 2 [Ochrobactrum anthropi ATCC 49188] Length = 377 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +D +++N+ S +R VK N +I L + G F SV E Sbjct: 20 LVVDTDVVRDNYQSFEKALPYSRIFYAVKANP----APEILRLLASLG-SCFDTASVAEI 74 Query: 69 VKLRLYT 75 Sbjct: 75 EMALEAG 81 >gi|134292751|ref|YP_001116487.1| alanine racemase domain-containing protein [Burkholderia vietnamiensis G4] gi|134135908|gb|ABO57022.1| alanine racemase domain protein [Burkholderia vietnamiensis G4] Length = 376 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 13/174 (7%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N ++A + VK C+++ A AG + V++++E Sbjct: 13 IDVDRMHANIARLHAHLDAFGVAFRPHVKT----TKCQQVVDAQIAAGARGITVSTLKEA 68 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPV------ISSVPQLTFYSKLMSCGVSH 122 + + ++ + G+ P + S + G Sbjct: 69 EQFFASGVRDIVYAV-GMIPARLPQALALRRRGCDLKIVADSLHTAQAIAAFGREHGERF 127 Query: 123 PYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++D +R G+ + L G + A + ++ Sbjct: 128 EVWIEIDVDGHRSGIRPDDDLLIDVGRTLAAGGMTLGGVLAHAGSSYEYDTHDA 181 >gi|15644616|ref|NP_229669.1| ornithine decarboxylase [Thermotoga maritima MSB8] gi|148270058|ref|YP_001244518.1| Orn/DAP/Arg decarboxylase 2 [Thermotoga petrophila RKU-1] gi|281412061|ref|YP_003346140.1| Ornithine decarboxylase [Thermotoga naphthophila RKU-10] gi|4982459|gb|AAD36935.1|AE001824_4 ornithine decarboxylase [Thermotoga maritima MSB8] gi|147735602|gb|ABQ46942.1| ornithine decarboxylase [Thermotoga petrophila RKU-1] gi|281373164|gb|ADA66726.1| Ornithine decarboxylase [Thermotoga naphthophila RKU-10] Length = 388 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 80/286 (27%), Gaps = 18/286 (6%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL+ ++ + M A A VK N+ +I L G +F V S E KL Sbjct: 21 DLSVVEKKYLEMKAALKKADIYYAVKANS--H--PRIISLLARLG-SNFDVASKGEIEKL 75 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + +E I F + +V K+ ++V+T Sbjct: 76 LALGVDGKRMSFGNTIKREEDIAFAYKNGIRLFAVDSEMEVEKVAINAPGSFVFVRVETD 135 Query: 132 FNRLGL--------SLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQL--ER 181 + + AL + KL L + +P S ++++ Sbjct: 136 GADADWPLSRKFGTNPEHALQLLSYASKMKLIPAGLSFHVGSQNLNPESWKKAIEIAGRV 195 Query: 182 FRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 F+ + + + + G + I+++ + A Sbjct: 196 FKKAMRSGLNLFLLNVGGGFPVQHTKPIPSMEEIGK---AIEEAIDENLWFVHNLKVIAE 252 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 AG LV+ K G G T+ + Sbjct: 253 PGRYMVGEAGWLVTKVLLKSERSGEKWVYIDAGVFHGLAETIQNFE 298 >gi|255034819|ref|YP_003085440.1| alanine racemase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947575|gb|ACT92275.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053] Length = 370 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 + +++N SM +L+G+ R VK C + +AG+ F ++ E + Sbjct: 22 SRIESNIRSMVSLAGSKDRLVPHVKT----HKCPDVVAMHLSAGITKFKCATIAEAEMVA 77 Query: 73 LYT 75 Sbjct: 78 TAG 80 >gi|163758927|ref|ZP_02166014.1| putative ornithine, dap, or arginine decarboxylase protein [Hoeflea phototrophica DFL-43] gi|162284217|gb|EDQ34501.1| putative ornithine, dap, or arginine decarboxylase protein [Hoeflea phototrophica DFL-43] Length = 377 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 17/224 (7%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL +++N+ S ++ VK N +I L G +F SV E Sbjct: 20 LVVDLDVVRDNFVSFRKALPDSSIYYAVKANP----APEILRLLAGLG-SNFDCASVAEI 74 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 + + I L + +V K+ +V Sbjct: 75 EMALKAGATSARVSYGNTIKKERDIARAHALGVTLFAVDSHEEVEKIARAAPGARVFCRV 134 Query: 129 DT--------GFNRLGLSLQEALDFTHNSFNKKLGQL---SLIISHLACADDPSSHVNSV 177 T + G Q A+D + L + S + D + ++ Sbjct: 135 LTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGLVSHGVSFHVGSQMTKLDAWDAALSDA 194 Query: 178 QLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG 221 F L ++ G +++G Sbjct: 195 -RRVFDKLAQQGIHLKMVNMGGGFPTRYLKDIPTAQAYGQAIHG 237 >gi|323142966|ref|ZP_08077674.1| hypothetical protein HMPREF9444_00282 [Succinatimonas hippei YIT 12066] gi|322417239|gb|EFY07865.1| hypothetical protein HMPREF9444_00282 [Succinatimonas hippei YIT 12066] Length = 368 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 63/232 (27%), Gaps = 31/232 (13%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 + N + ++ + R VK ++ L G+ F ++ E + Sbjct: 20 DIIDQNINKAVNMAHTSERLWPHVKT----HKIPQMVNNLVKHGITKFKCATIAECEMV- 74 Query: 73 LYTPQARIFVLYGIHPGQEKIIFDTNLIPVI-------SSVPQLTFYSKLMSC-GVSHPY 124 TP I + Y + K ++ Q+ SK C + Sbjct: 75 ANTPATDILLAYPLIGPNIKRYIKLQQTFREKKFYAIGDNLEQIKLLSKEAVCTNEIIHF 134 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSS-----------H 173 + V+ G NR G+ +++ N K + + L C D + Sbjct: 135 FIDVNMGMNRTGVPIEKLNLLADGIKNLKN----IQLCGLHCYDGNHNDKDLIKRRESVD 190 Query: 174 VNSVQLERFRTLISHYKGIEASLASSSGIL--LGPNYHFQLTRPGISLYGGT 223 QL I+ I + + Y PG Sbjct: 191 TTMNQLMPIIEKINKDFNINLIIIAGGSPAFPCYDKYEKVYCSPGTLFVNDY 242 >gi|312961902|ref|ZP_07776399.1| alanine racemase [Pseudomonas fluorescens WH6] gi|311283712|gb|EFQ62296.1| alanine racemase [Pseudomonas fluorescens WH6] Length = 378 Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 11/175 (6%) Query: 11 IDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ ++ N M R +K C + A AG V++++E Sbjct: 15 IDIPRMQRNIQRMQQRLNDLGVRLRPHIKT----SKCLPVIHAQIAAGASGVTVSTLKEA 70 Query: 69 VKLRLYTPQARIF---VLYGIHPGQEKIIFDTNLIP--VISSVPQLTFYSKLMSCGVSHP 123 + + + G P + + S + Sbjct: 71 QHCFAAGIRDVFYAVAIAPGKLPQALALRRQGCNLSLLTDSVAGAEAIVAFAQQQDERFD 130 Query: 124 YALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL+ G + A + + ++Q Sbjct: 131 MWIEIDCDGHRSGLAADAPALLEVAQSLSNGGMHLRGVMTHAGSSYELDNPQALQ 185 >gi|307265218|ref|ZP_07546777.1| alanine racemase domain-containing protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919840|gb|EFN50055.1| alanine racemase domain-containing protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 79 Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVK---DNAYGLGCEKIAPALYNAGVQDF 60 + L+I+L L+ N ++ L N + V K +IA + GV+ Sbjct: 2 YPLLRINLEKLRKNTQTIVNLCEKRNIKVVGVTKVFCA------IPEIAQTMVKGGVEIL 55 Query: 61 FVTSV 65 + + Sbjct: 56 GDSRI 60 >gi|146343068|ref|YP_001208116.1| putative ornithine decarboxylase [Bradyrhizobium sp. ORS278] gi|146195874|emb|CAL79901.1| putative ornithine decarboxylase [Bradyrhizobium sp. ORS278] Length = 380 Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 41/148 (27%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDN----------------------------- 39 L +DL +++N+ + ++R VK N Sbjct: 23 LVVDLDIVRDNYMNFARALPDSRVFYAVKANPAPEVLSLLASLGSSFDTATVAEIEMALA 82 Query: 40 --------AYGLGCEK---IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88 +YG +K IA A Y G++ F V E K+ P A++F Sbjct: 83 AGATPDRISYGNTIKKERDIARA-YALGIRLFAVDCAAEVEKISRAAPGAKVFCRILYDC 141 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSKLM 116 + ++ +K + Sbjct: 142 AGAEWPLSRKFGCDPEMAVEVLDLAKRL 169 >gi|258542635|ref|YP_003188068.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-01] gi|256633713|dbj|BAH99688.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-01] gi|256636772|dbj|BAI02741.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-03] gi|256639825|dbj|BAI05787.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-07] gi|256642881|dbj|BAI08836.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-22] gi|256645936|dbj|BAI11884.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-26] gi|256648989|dbj|BAI14930.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-32] gi|256651976|dbj|BAI17910.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655033|dbj|BAI20960.1| aspartate:alanine antiporter [Acetobacter pasteurianus IFO 3283-12] Length = 563 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 322 ITDSLSIEVGDYIQIFGPDIKLDDVALASGTT 353 +T S+ ++ GD + + G + A GT Sbjct: 348 VTGSMQVKDGDIVTLLGTSADVQRAAAQIGTI 379 >gi|254255433|ref|ZP_04948749.1| hypothetical protein BDAG_04773 [Burkholderia dolosa AUO158] gi|124901170|gb|EAY71920.1| hypothetical protein BDAG_04773 [Burkholderia dolosa AUO158] Length = 398 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 11/137 (8%) Query: 11 IDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 ID+ + N M + R VK C ++ A AG + V++++E Sbjct: 35 IDVARMNRNIERMQQRMNALGVRFRPHVKT----TKCTQVVDAQMKAGARGITVSTLKEA 90 Query: 69 VKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHP 123 + + ++ + + I S + Sbjct: 91 ERFFAGGIRDIVYAVGIAPSKLPQALALRRQGCDLKIVADSVACADAIVAFGREHAERFD 150 Query: 124 YALQVDTGFNRLGLSLQ 140 +++D +R G++ Sbjct: 151 VWIEIDVDGHRSGIAPD 167 >gi|313829074|gb|EFS66788.1| conserved domain protein [Propionibacterium acnes HL063PA2] Length = 136 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 8/134 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKI-APALYNAGVQDFFVT 63 RL+I +++N ++ + AAV K L + AL + G+ + Sbjct: 6 PRLEIFADRIRDNARAIVTQCAKHGVQVAAVTKV----LHAHPVLLQALEDTGITMLADS 61 Query: 64 SVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSH 122 ++ ++ +L I + SS+ +T S+ G H Sbjct: 62 RLQNLRQIAECGTSLPTMLLRAPGRHDIDDTVQLADISLNSSLTTMTALSEAAVRAGTRH 121 Query: 123 PYALQVDTGFNRLG 136 + VD G R G Sbjct: 122 GVIVMVDVGDLREG 135 >gi|90418219|ref|ZP_01226131.1| ornithine decarboxylase [Aurantimonas manganoxydans SI85-9A1] gi|90337891|gb|EAS51542.1| ornithine decarboxylase [Aurantimonas manganoxydans SI85-9A1] Length = 406 Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 21 HSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARI 80 M A G+ A VK N G + L AGV+ F V S E +R P A + Sbjct: 34 RFMAAFPGDTAYA--VKTN----GEPMVLETLSRAGVRIFDVASPGEFEAVRAAQPDAEM 87 Query: 81 FVLYG 85 ++ Sbjct: 88 LYMHP 92 >gi|307946080|ref|ZP_07661415.1| lysine/ornithine decarboxylase [Roseibium sp. TrichSKD4] gi|307769744|gb|EFO28970.1| lysine/ornithine decarboxylase [Roseibium sp. TrichSKD4] Length = 376 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + +DL +++N+H+ + VK N +I L + G F SV E Sbjct: 19 VVVDLDIVRDNYHAFARSLPDTSVYYAVKANP----APEILSLLESLG-SCFDCASVGE 72 >gi|288957461|ref|YP_003447802.1| ornithine decarboxylase [Azospirillum sp. B510] gi|288909769|dbj|BAI71258.1| ornithine decarboxylase [Azospirillum sp. B510] Length = 382 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L IDL ++ N++ ++ +AR VK N +I L G F SV E Sbjct: 19 LVIDLDVVEQNYNDLHDALPDARIFYAVKANP----AAEILGLLARLG-SAFDCASVPE 72 >gi|223936213|ref|ZP_03628126.1| alanine racemase domain protein [bacterium Ellin514] gi|223895075|gb|EEF61523.1| alanine racemase domain protein [bacterium Ellin514] Length = 368 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 6/68 (8%) Query: 12 DLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D AL+ N M A + + K C KI AG + E Sbjct: 25 DADALQANIDRMAAFFVNRPSGLRPHFKS----HKCTKIVRLQMQAGAVGITCAKLGEAE 80 Query: 70 KLRLYTPQ 77 L + Sbjct: 81 VLADAGIR 88 >gi|6174840|dbj|BAA86032.1| low-specificity D-threonine aldolase [Achromobacter xylosoxidans subsp. xylosoxidans] Length = 377 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 32/135 (23%), Gaps = 24/135 (17%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 L +DL A + N +M A + A K C +IA G + Sbjct: 27 PSLVLDLPAFEANLRAMQAWADRHEVALRPHAKA----HKCPEIALRQLALGARGICCQK 82 Query: 65 VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 V E P T S+ P ++ + S Sbjct: 83 VSEA--------------CPSWPPASATSTSATKW----SARPSWRCWANWRAPPRSACA 124 Query: 125 ALQVDTGFNRLGLSL 139 T + Sbjct: 125 WTTPKTWRSVGRHDP 139 >gi|256026446|ref|ZP_05440280.1| putative amino acid racemase [Fusobacterium sp. D11] gi|289764458|ref|ZP_06523836.1| alanine racemase domain-containing protein [Fusobacterium sp. D11] gi|289716013|gb|EFD80025.1| alanine racemase domain-containing protein [Fusobacterium sp. D11] Length = 78 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 6 FLRLKIDLTALKNNWHSMNALSGNART-AAVV-KDNAYGLGCE-KIAPALYNAGVQDFFV 62 + RL+I++ LK N ++ L A+V K L ++ + Sbjct: 2 YPRLEINIEKLKTNLQVISNLLKKNNISLAMVTKAYCANLDIVNELVK--DKNLIDYLAD 59 Query: 63 TSVEEGVKLRLYTPQARIF 81 + +E ++R + Sbjct: 60 SRIENLKEMRHINIPKILL 78 >gi|254496840|ref|ZP_05109691.1| metal-activated pyridoxal enzyme [Legionella drancourtii LLAP12] gi|254353967|gb|EET12651.1| metal-activated pyridoxal enzyme [Legionella drancourtii LLAP12] Length = 375 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 46/338 (13%), Positives = 94/338 (27%), Gaps = 52/338 (15%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +D L++N M + +T C K+A + G Sbjct: 18 LVLDKDILRSNLDVMRQHVITNKINLRPHCKT----------HKCSKLAQLQIDYGAIGV 67 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNL------IPVISSVPQLTFYSK 114 + E L + + + + + V + L Sbjct: 68 CAAKISEAEVLIQNRIPNVLITSPIVTKNKITRLMACIETAPATLVVVDNEENILALNHA 127 Query: 115 LMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKL------GQLSLIISHLACAD 168 SC + VD+G R G+ + AL+F + + H+A + Sbjct: 128 GESCQKMIHVLVDVDSGIGRTGVKPEHALNFAMKISALPWLKLMGIQCYAGNLQHIASFN 187 Query: 169 D-PSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGP----NYHFQLTRPGIS----- 218 + ++++Q+ +G+ + + +G +PG Sbjct: 188 ERRQKSLSTMQMASELVSCFKAQGLNCPILTGTGTGTYDIDIEATGVTEIQPGSYAVMDV 247 Query: 219 ---LYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275 G + + + + +T +I +A E V+ K I Sbjct: 248 EYAAIGAKESMKQFDVFKPAMTLLTTVISTHRA---EHVTVDAGTKAIYVDQTYKPRIIS 304 Query: 276 ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 G G EH + G +P+ G++ Sbjct: 305 HQGLEYDWGGFGDEHGKITA------VAGTKLPLCGEV 336 >gi|149178497|ref|ZP_01857086.1| alanine racemase-like protein [Planctomyces maris DSM 8797] gi|148842710|gb|EDL57084.1| alanine racemase-like protein [Planctomyces maris DSM 8797] Length = 366 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 23/144 (15%) Query: 11 IDLTALKNNWHSM--------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 IDL ++ N M + + IA A AG Sbjct: 20 IDLDIMEANIQKMSDYILSRGKTWRPHEKC----------HKTPAIALAQMGAGAIGVTC 69 Query: 63 TSVEEGVKLRLYTPQARIFVLYGIHPGQEK-----IIFDTNLIPVISSVPQLTFYSKLMS 117 V E + + + + + + +I Sbjct: 70 AKVSEAEVMAAAGVKDILIANMIVGKTKWERVVSLCRHARPIIACDHYAQIEPLAKMCAD 129 Query: 118 CGVSHPYALQVDTGFNRLGLSLQE 141 GV +V+ G NR+G + Sbjct: 130 AGVVCRMMPEVNIGLNRVGSRPGQ 153 >gi|54308463|ref|YP_129483.1| hypothetical protein PBPRA1270 [Photobacterium profundum SS9] gi|46912892|emb|CAG19681.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 424 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 92/354 (25%), Gaps = 36/354 (10%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPAL----YNAGVQ 58 I +AL NN M + + + + G + PA AG Sbjct: 45 SLPAAVIKQSALTNNMEWMQTFANHHQVKLSP--------HGKTTMTPAFFEQQLQAGAW 96 Query: 59 DFFVTS---VEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY--- 112 V + V+ + ++ + + N + V Sbjct: 97 GLTVATAPHVQAAAEAGAENIMMANQLVGKANMEIVAKVIQHNGVNFYCCVDSTDNADQL 156 Query: 113 -SKLMSCGVSHPYALQVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDP 170 GV+ ++ R + +E + H+ N L+ I + Sbjct: 157 NQFFTVIGVNLNVLIEAGVEGGRCGCRTPEEVIALAHHINNLPALNLAGIEVYEGVIHGD 216 Query: 171 SSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSH 230 ++ + Q E + ++ I+ G + + Sbjct: 217 NAEQDIRQFLAQTIQTVELLTKEKLITDTNPIITGAGSA--WYDVVAESFAACQHLTAII 274 Query: 231 PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL--------T 282 V + I + L + + A +A Sbjct: 275 RPGCYVIHDTGIYEDAQNLVMDRAEQNHGYACELGGNLESALEVWAYVLSRPETNKAVVG 334 Query: 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT---MDM-TMFDITDSLSIEVGD 332 L D + + +G+ G + + G + MD T + D + ++VGD Sbjct: 335 LGKRDVAFDAGLPIPERGYRSGEAISVKGLVATAIMDQHTFVTVPDGVDLKVGD 388 >gi|260061620|ref|YP_003194700.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Robiginitalea biformata HTCC2501] gi|88785752|gb|EAR16921.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Robiginitalea biformata HTCC2501] Length = 377 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 12/157 (7%) Query: 16 LKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74 ++ N +M ++G+ R +K +I G+ F ++ E L Sbjct: 34 IRRNIDAMIRIAGSPDRLRPHIKT----HKTAEIIQMQRGRGIDRFKCATIAEAELLGSL 89 Query: 75 TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYA-------LQ 127 + + P QE+++ P + + L + G L Sbjct: 90 GAGDILLAYQPVGPDQERLLRLQAAYPGVRFAALVDHEETLKALGELATSHNAQIRLYLD 149 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL 164 ++TG +R G+ A + + + Sbjct: 150 LNTGMDRTGIVPGAAAAALYRKIAAHPHLEACGLHAY 186 >gi|54298526|ref|YP_124895.1| hypothetical protein lpp2590 [Legionella pneumophila str. Paris] gi|53752311|emb|CAH13743.1| hypothetical protein lpp2590 [Legionella pneumophila str. Paris] Length = 376 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 27/195 (13%) Query: 9 LKIDLTALKNNWHSMNA--------LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L ID LK N M + + +T C +IA G Sbjct: 18 LVIDYEKLKYNLKMMQEHGFKWGIGIRPHCKT----------HKCTQIARLQLEYGAIGI 67 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISS--VPQLTFYSKLMSC 118 + E L + + + +F+ V L Sbjct: 68 SAAKLSEAEVLVSKQIANVLITSPIVSEAKHSRLFNCLKSAPDLMLVVDGKDNIRMLNEL 127 Query: 119 GVSHPYALQ----VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 G S + +D+G R G++ + AL++ H +L I A Sbjct: 128 GKSLNQPVYVLLDIDSGIGRTGINPEAALEYGHFINGMNWLKLKGIQC---YAGHLQHIQ 184 Query: 175 NSVQLERFRTLISHY 189 N + + F I Sbjct: 185 NYEERKAFSLQIMEM 199 >gi|73669670|ref|YP_305685.1| ornithine decarboxylase [Methanosarcina barkeri str. Fusaro] gi|72396832|gb|AAZ71105.1| ornithine decarboxylase [Methanosarcina barkeri str. Fusaro] Length = 390 Score = 37.0 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL ++ ++ + A+ VK N +++ AL + G +F V +V E Sbjct: 34 LTVDLQKIEQSYDELVEHMPFAKIHYAVKANP----MDEVVLALKSKG-SNFDVATVYEL 88 Query: 69 VKLRLYTPQARIF 81 +L + Sbjct: 89 DQLLRLGVEPERI 101 >gi|119963284|ref|YP_946033.1| alanine racemase N-terminal domain-containing protein [Arthrobacter aurescens TC1] gi|119950143|gb|ABM09054.1| putative alanine racemase, N-terminal domain protein [Arthrobacter aurescens TC1] Length = 366 Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 18/84 (21%) Query: 11 IDLTALKNNWHSMN--------ALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFV 62 ID+ L N M L + +T +IA AG V Sbjct: 15 IDVDVLDRNIERMAGNMRGRGLQLRPHVKT----------HKTLEIARKQLAAGALGITV 64 Query: 63 TSVEEGVKLRLYTPQARIFVLYGI 86 ++ E + Sbjct: 65 ATIGEAEVFAADGVKDIFIAFPLW 88 >gi|254705776|ref|ZP_05167604.1| metal-activated pyridoxal protein [Brucella pinnipedialis M163/99/10] gi|261313198|ref|ZP_05952395.1| alanine racemase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261302224|gb|EEY05721.1| alanine racemase domain-containing protein [Brucella pinnipedialis M163/99/10] Length = 355 Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 44/163 (26%), Gaps = 12/163 (7%) Query: 11 IDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 +D+ + N A + + +K A AG + E Sbjct: 18 VDVDRVVANIEKAQAHADAAGVKLRPHIKT----HKLPFFARMQVKAGAVGITCQKLGEA 73 Query: 69 VKLRLYTPQARIFVLYG-IHPGQEKIIFDTNLIPVISSVPQLTFYS----KLMSCGVSHP 123 + +++ I + +V T + M+ Sbjct: 74 EVMADAGLTDIFLPYNILGQEKLDRLHALHRRITISVTVDNKTSLAGLAQHFMNEKRPLK 133 Query: 124 YALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLA 165 ++ DTG R G+ +A + H ++++ A Sbjct: 134 VLVECDTGMGRCGVQTPGQARELAHIIEKSAGLCFVGLMTYPA 176 >gi|115526790|ref|YP_783701.1| ornithine decarboxylase [Rhodopseudomonas palustris BisA53] gi|115520737|gb|ABJ08721.1| ornithine decarboxylase [Rhodopseudomonas palustris BisA53] Length = 380 Score = 37.0 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ + ++R VK N ++ L + G F SV E Sbjct: 23 LVVDLEVVRDNFQTFATALPDSRVFYAVKANP----APEVLTLLASMG-SCFDCASVAE 76 >gi|295695164|ref|YP_003588402.1| alanine racemase domain protein [Bacillus tusciae DSM 2912] gi|295410766|gb|ADG05258.1| alanine racemase domain protein [Bacillus tusciae DSM 2912] Length = 389 Score = 37.0 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 9/130 (6%) Query: 36 VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQ----ARIFVLYGIHPGQE 91 VK +IA AG Q V + E + A + Sbjct: 49 VKA----HKTVEIARRQRMAGTQGITVAKLGEAEVFAEAGFRDITVAYPVISAVKRDRLA 104 Query: 92 KIIFDTNLIPVISSVPQLTFYSKLMSCG-VSHPYALQVDTGFNRLGLSLQEALDFTHNSF 150 + + V + Q+ +++ V+ L+VDTG R G+ E Sbjct: 105 ALAARARVTTVADDLEQVDLLARMAEERAVTVGLWLKVDTGLYRCGIPTAEEDRAAAVVS 164 Query: 151 NKKLGQLSLI 160 L + Sbjct: 165 RILLWEKRWR 174 >gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum] Length = 765 Score = 37.0 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 14/245 (5%), Positives = 46/245 (18%), Gaps = 22/245 (8%) Query: 81 FVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN------- 133 + + + ++ N + + + + +N Sbjct: 358 WYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFN 417 Query: 134 --RLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191 R + + ++ + + N + F + + Y Sbjct: 418 LWRFDFWKRYWFNSWYDWNWYWHWNRFNSGYNWYRINFNFWSFNFRKWYWFYSGYNWYWV 477 Query: 192 IEASLASSSGILLGPNYHFQLT----------RPGISLYGGTDKINKSHPMQTVVTAEAR 241 N + R YG + N + + R Sbjct: 478 NLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFR 537 Query: 242 IILIRKALAGELVSYGGQKKL---TRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + + R + + + S + + Sbjct: 538 KWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYN 597 Query: 299 KGFIK 303 ++ Sbjct: 598 WNWVN 602 >gi|168704641|ref|ZP_02736918.1| alanine racemase domain protein [Gemmata obscuriglobus UQM 2246] Length = 366 Score = 37.0 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 6/80 (7%) Query: 7 LRLKIDLTALKNNWHSM--NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTS 64 +L +DL + N M A R K L C +A + AG F Sbjct: 21 PQLLVDLDVVDGNVRRMFAAARGRGVRVRVHFKS----LKCTGLARHVAAAGPDGFAAAK 76 Query: 65 VEEGVKLRLYTPQARIFVLY 84 + E L + Sbjct: 77 LNEAEALADAGVTDILLANQ 96 >gi|134095890|ref|YP_001100965.1| metal-activated pyridoxal protein [Herminiimonas arsenicoxydans] gi|133739793|emb|CAL62844.1| putative amino acid aldolase/racemase [Herminiimonas arsenicoxydans] Length = 380 Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 73/307 (23%), Gaps = 36/307 (11%) Query: 12 DLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 DL A + N +M AL+ A K I+ A G + E Sbjct: 30 DLDAFEFNLCNMAALAKKNGLALRPHAKA----HKSSTISRAQIALGAVGICCQKLSEAY 85 Query: 70 KLRLYTPQARIFVLYGIHPGQEKIIFD-----TNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + + + I V + GV+ Sbjct: 86 PFVRAGIDNIHISNEFVGADKVAMAVELAGLIQLSICVDHVAQVDAIGKAASAAGVTIIV 145 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRT 184 +VD G R G+ EAL + G + A Q Sbjct: 146 MPEVDVGHGRCGVDSNEALAALIDRIAAYPGLQFGGLQ--AYNGGIQHLATWEQRRLEAA 203 Query: 185 LISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIIL 244 + ++ + L+ GT + + + + T + + I L Sbjct: 204 RSAD---------RTAQYIQFLEARGVLSPVVSGAGTGTVEFDVASGVYTEMQPGSYIFL 254 Query: 245 IRKALAGELVSYGG---------QKKLTRDSLIAVAAIGYAD-----GYPLTLSGLDSEH 290 + E T AV +G G P +G + Sbjct: 255 DGHYGSNEWAGEYMPQHGLFILSTIMSTAKPHKAVCDVGLKGVAVDSGLPRVRAGDYEDK 314 Query: 291 SPSVFLG 297 V Sbjct: 315 LRYVSAN 321 >gi|50059374|gb|AAT69413.1| alanine racemase [Borrelia afzelii ACA-1] gi|50059379|gb|AAT69417.1| alanine racemase [Borrelia garinii] Length = 42 Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 7/22 (31%), Positives = 10/22 (45%) Query: 23 MNALSGNARTAAVVKDNAYGLG 44 + G A +K +AYG G Sbjct: 21 IKNKIGEKEIVATLKGDAYGHG 42 >gi|119494577|ref|ZP_01624710.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106] gi|119452083|gb|EAW33294.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106] Length = 193 Score = 37.0 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 20 WHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK----LRLY 74 + + ++ R AV K + Y AG++DF + E ++ L+ Sbjct: 9 IAEIRSQVPDSVRIVAVTKTV-----SVEAIRIAYAAGIRDFGENRISEAMEKQEQLQDL 63 Query: 75 TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 + + + K + I + S+ +L P Sbjct: 64 SDITWHLIGHIQSNKAIKAVQHFQWIHSVDSLKLAQRLDRLAQESDCQPQVC 115 >gi|170738789|ref|YP_001767444.1| ornithine decarboxylase [Methylobacterium sp. 4-46] gi|168193063|gb|ACA15010.1| Ornithine decarboxylase [Methylobacterium sp. 4-46] Length = 390 Score = 37.0 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 DL +++N+H+ + R VK N ++ L + G F SV E Sbjct: 28 DLDVVRDNYHAFARALPDTRVFYAVKANP----APEVLGLLASLG-SCFDTASVAE 78 >gi|282857080|ref|ZP_06266327.1| metal-activated pyridoxal enzyme [Pyramidobacter piscolens W5455] gi|282585089|gb|EFB90410.1| metal-activated pyridoxal enzyme [Pyramidobacter piscolens W5455] Length = 369 Score = 37.0 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 18/83 (21%) Query: 9 LKIDLTALKNNWHSMNALS--------GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 L +D + +N +M + + +T IA + G + Sbjct: 11 LLVDREIMMDNIRAMQNRANRKGVALRPHTKT----------HKTPAIALIQRDCGCKGI 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVL 83 V + E + Sbjct: 61 AVAKLGEAEVMADAGFDDIFIAN 83 >gi|148252905|ref|YP_001237490.1| ornithine decarboxylase [Bradyrhizobium sp. BTAi1] gi|146405078|gb|ABQ33584.1| ornithine decarboxylase [Bradyrhizobium sp. BTAi1] Length = 380 Score = 37.0 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 41/148 (27%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDN----------------------------- 39 L +DL +++N+ + ++R VK N Sbjct: 23 LVVDLDVVRDNYMNFAKALPDSRVFYAVKANPAPEVLSLLASLGSSFDTATVAEIEMALA 82 Query: 40 --------AYGLGCEK---IAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHP 88 +YG +K IA A Y G++ F V E K+ P A++F Sbjct: 83 AGATPDRISYGNTIKKERDIARA-YALGIRLFAVDCAAEVEKISRAAPGAKVFCRILYDC 141 Query: 89 GQEKIIFDTNLIPVISSVPQLTFYSKLM 116 + ++ +K + Sbjct: 142 AGAEWPLSRKFGCDPEMAVEVLDLAKRL 169 >gi|254420313|ref|ZP_05034037.1| Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein [Brevundimonas sp. BAL3] gi|196186490|gb|EDX81466.1| Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein [Brevundimonas sp. BAL3] Length = 399 Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 29 NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG 85 A VK N + L AGV+ F V S+ E +R + R+ ++ Sbjct: 18 KADVFYAVKANP----SRWVIETLIEAGVRGFDVASIAEIELVRSVSHDVRLAFMHP 70 >gi|91975336|ref|YP_567995.1| ornithine decarboxylase [Rhodopseudomonas palustris BisB5] gi|91681792|gb|ABE38094.1| ornithine decarboxylase [Rhodopseudomonas palustris BisB5] Length = 380 Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL +++N+ S ++R VK N ++ L + G F SV+E Sbjct: 23 LVVDLEVVRDNFTSFARALPDSRVFYAVKANP----APEVLSLLASLG-SCFDCASVQE 76 >gi|323136936|ref|ZP_08072016.1| Orn/DAP/Arg decarboxylase 2 [Methylocystis sp. ATCC 49242] gi|322397697|gb|EFY00219.1| Orn/DAP/Arg decarboxylase 2 [Methylocystis sp. ATCC 49242] Length = 381 Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 L +DL ++ N+ + R VK N ++ L + G F SV E Sbjct: 23 LVVDLDVVRENYLGFAKALPDTRVFYAVKANP----APEVLSLLASLG-SCFDTASVVE 76 >gi|261329626|emb|CBH12608.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 502 Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 9/145 (6%), Positives = 25/145 (17%), Gaps = 9/145 (6%) Query: 74 YTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSH---PYALQVDT 130 P + + + + Sbjct: 79 AAVPQPPMAAVPQPPMAAQFHNHQWQQFHNHQWQRFHNHQWQQFHNLQWQQSHNHQWQQF 138 Query: 131 GFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR--TLISH 188 ++ HN ++ L SH + ++ Q ++F Sbjct: 139 HNHQWQRFHNHQWQRFHNHQWQQFHNLQWQRSH----NHQWQRFHNHQWQQFHNLQWQQF 194 Query: 189 YKGIEASLASSSGILLGPNYHFQLT 213 + + + Q Sbjct: 195 HNHQWQRFHNHQWQRFHNHQWQQFH 219 >gi|183227667|dbj|BAG24498.1| D-threo-3-hydroxyaspartate dehydratase [Delftia sp. HT23] Length = 380 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 44/152 (28%), Gaps = 11/152 (7%) Query: 9 LKIDLTALKNNWHSMNAL--SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 IDL ++ N M + R VK +A A AG V++++ Sbjct: 13 AVIDLDRMQRNIARMQQRMDAQGVRLRPHVKT----SKSVPVAAAQRAAGASGITVSTLK 68 Query: 67 EGVKLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVS 121 E + ++ + Q + + V S + G + Sbjct: 69 EAEQFFAAGTTDILYAVSMAPHRLPQALQLRRRGCDLKLIVDSVAAAQAIAAFGREQGEA 128 Query: 122 HPYALQVDTGFNRLGLSLQEALDFTHNSFNKK 153 +++DT +R G+ + Sbjct: 129 FEVWIEIDTDGHRSGVGADDTPLLLAIGRTLH 160 >gi|296123157|ref|YP_003630935.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776] gi|296015497|gb|ADG68736.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776] Length = 374 Score = 36.6 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 17/74 (22%) Query: 9 LKIDLTALKNNWHSM-------NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 L IDL A++ N M L + +T +++ G++ Sbjct: 20 LIIDLDAVRENLDHMLAVSGGPERLRPHCKT----------HKMLELSKLEVARGIRRHK 69 Query: 62 VTSVEEGVKLRLYT 75 + E L Sbjct: 70 AATFAEAEMLARAG 83 >gi|169842061|ref|ZP_02875166.1| hypothetical protein cdivTM_33162 [candidate division TM7 single-cell isolate TM7a] Length = 37 Score = 36.6 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 6/16 (37%), Positives = 10/16 (62%) Query: 345 DVALASGTTNYDLLVR 360 +VA GT +Y++L Sbjct: 2 EVAELCGTISYEILCG 17 >gi|474034|emb|CAA47165.1| ornithine decarboxylase [Drosophila melanogaster] Length = 394 Score = 36.6 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 53/213 (24%), Gaps = 12/213 (5%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL++++ N L + VK N + L G F S E VKL Sbjct: 37 DLSSVERNVRLWQKLLPRIKPFYAVKCN----DDPMVVRLLAQLGA-GFDCASKNE-VKL 90 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + + +P + + +S+ + Sbjct: 91 -VLGFDVSPERIIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVY-----KLHTHYPNSNL 144 Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191 R +EA + F + + LA + + S + + + Y Sbjct: 145 IVRFKSEAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQAYDR 204 Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 + Y G G D Sbjct: 205 AIKKAKNLFKFGALLGYDMDFLDIGGGFPGSDD 237 >gi|330986553|gb|EGH84656.1| alanine racemase domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 378 Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 11/174 (6%) Query: 12 DLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV 69 D+ ++ N M R VK C + A AG V++++E Sbjct: 16 DVPRMQRNIQRMQHRMNELGVRLRPHVKT----SKCLPVIQAQIAAGASGVAVSTLKEAE 71 Query: 70 KLRLYTPQARIFVLYGIHPG-----QEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPY 124 + + + + I S V + + Sbjct: 72 HCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSILTDSVVAAQAIVAFGQRHDENFDV 131 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +++D +R GL++ + + G + A + ++Q Sbjct: 132 WIEIDCDGHRSGLTVDDPSLVEVARTLIEGGMHLRGVMTHAGSSYDLDTPEALQ 185 >gi|209966274|ref|YP_002299189.1| lysine [Rhodospirillum centenum SW] gi|209959740|gb|ACJ00377.1| lysine [Rhodospirillum centenum SW] Length = 376 Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 5/130 (3%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL + N+ ++ +A+ VK N +I L G F SV E Sbjct: 19 LVVDLDVVARNYDRLSGALPDAKIYYAVKANP----APEILRLLTGLG-SSFDTASVPEI 73 Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQV 128 I L + + K+ + ++ Sbjct: 74 EDCLAAGATPDRISYGNTIKKAADIRRAYELGVRLFAFDSEAELEKIAANAPGSRVFCRI 133 Query: 129 DTGFNRLGLS 138 T Sbjct: 134 LTSGEGADWP 143 >gi|474030|emb|CAA47167.1| ornithine decarboxylase [Drosophila melanogaster] Length = 394 Score = 36.6 bits (83), Expect = 6.8, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 53/213 (24%), Gaps = 12/213 (5%) Query: 12 DLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKL 71 DL++++ N L + VK N + L G F S E VKL Sbjct: 37 DLSSVERNVRLWQKLLPRIKPFYAVKCN----DDPMVVRLLAQLGA-GFDCASKNE-VKL 90 Query: 72 RLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTG 131 + + +P + + +S+ + Sbjct: 91 -VLGFDVSPERIIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVY-----KLHTHYPNSNL 144 Query: 132 FNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKG 191 R +EA + F + + LA + + S + + + Y Sbjct: 145 IVRFKSEAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQAYDR 204 Query: 192 IEASLASSSGILLGPNYHFQLTRPGISLYGGTD 224 + Y G G D Sbjct: 205 AIKKAKNLFKFGALLGYDMDFLDIGGGFPGSDD 237 >gi|90414786|ref|ZP_01222754.1| hypothetical protein P3TCK_17244 [Photobacterium profundum 3TCK] gi|90324091|gb|EAS40676.1| hypothetical protein P3TCK_17244 [Photobacterium profundum 3TCK] Length = 424 Score = 36.6 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 45/360 (12%), Positives = 94/360 (26%), Gaps = 44/360 (12%) Query: 5 EFLRLKIDLTALKNNWHSMNALSGN--ARTAAVVKDNAYGLGCEKIAPAL----YNAGVQ 58 I +AL NN M + + + + G + PA AG Sbjct: 45 SLPAAVIKQSALTNNMEWMQTFANHHQVKLSP--------HGKTTMTPAFFEQQLQAGAW 96 Query: 59 DFFVTS------VEE--GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT 110 V + E + + Q G+ + V S+ Sbjct: 97 GLTVATAPHVQAAAEGGAENIMMAN-QLVGKANMGMVANVIQQNGVNFYCCVDSTDNVDQ 155 Query: 111 FYSKLMSCGVSHPYALQVDTGFNR-LGLSLQEALDFTHNSFNKKLGQLSLIISHLACADD 169 + ++ ++ R + +E + H+ N L ++ + + Sbjct: 156 LNQFFVDVEITLNVLIEAGVEGGRCGCRTPEEVITLAHHINNLPA----LNLAGIEVYEG 211 Query: 170 PSSHVNSVQ-LERFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGTDKI 226 N+ Q + +F IE L + + ++ + + Sbjct: 212 VIHGDNAEQDIRQFLAQTIQTVELLIEEKLITDTNPII-TGAGSAWYDVVAESFAACLHL 270 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPL----- 281 V + I + L + A +A Sbjct: 271 TAIIRPGCYVIHDTGIYEDAQNLVMGRAEQNHGYACELGGNLESALEVWAYVLSRPETNK 330 Query: 282 ---TLSGLDSEHSPSVFLGGKGFIKGYMVPILGKIT---MDM-TMFDITDSLSIEVGDYI 334 L D + + +G+ G + + G + MD + D + ++VGD I Sbjct: 331 AVIGLGKRDVAFDAGLPIPERGYRNGEAISVKGLVATAIMDQHIFVTVPDGVDLKVGDMI 390 >gi|288960554|ref|YP_003450894.1| alanine racemase domain-containing protein [Azospirillum sp. B510] gi|288912862|dbj|BAI74350.1| alanine racemase domain-containing protein [Azospirillum sp. B510] Length = 352 Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 6/75 (8%) Query: 11 IDLTALKNNWHSMNALSGNARTA--AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 IDL +++N M A A +K + A G + E Sbjct: 13 IDLDRVEHNLTKMQAYCDRHGLALRPHIKT----HKLPQFARRQIELGAVGITCQKISEA 68 Query: 69 VKLRLYTPQARIFVL 83 + + + Sbjct: 69 MVMADAGCTDILLTY 83 >gi|242399484|ref|YP_002994909.1| Deblocking aminopeptidase [Thermococcus sibiricus MM 739] gi|242265878|gb|ACS90560.1| Deblocking aminopeptidase [Thermococcus sibiricus MM 739] Length = 348 Score = 36.6 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 45 CEKIAPALYNAGVQDFFVTSVEEGVKLR 72 ++A AL +FV SV+E V LR Sbjct: 187 MIEVARALEEHQADIYFVASVQEEVGLR 214 >gi|212702649|ref|ZP_03310777.1| hypothetical protein DESPIG_00677 [Desulfovibrio piger ATCC 29098] gi|212673921|gb|EEB34404.1| hypothetical protein DESPIG_00677 [Desulfovibrio piger ATCC 29098] Length = 397 Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 6 FLRLKIDLTALKNNWHSMNA--LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVT 63 L+I++ AL +N + + R V+K A I L G + + Sbjct: 1 MPELEINMDALAHNLRLVQRQEQAWGFRFLPVLKMVA-SH--PDIVDFLRTQGYACYGIA 57 Query: 64 SVEE 67 + E Sbjct: 58 DMTE 61 >gi|302524721|ref|ZP_07277063.1| orn/DAP/Arg decarboxylase 2 [Streptomyces sp. AA4] gi|302433616|gb|EFL05432.1| orn/DAP/Arg decarboxylase 2 [Streptomyces sp. AA4] Length = 502 Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%) Query: 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEG 68 L +DL ++ + + A+ AR VK N ++ + AG F V EE Sbjct: 22 LVVDLDVVRGSCARLRAVLPEARMYYAVKANP----APEVVRVVRQAGA-GFDVAGREE- 75 Query: 69 VKLRLY-TPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 ++L L + I F + + KL + + Sbjct: 76 IELCLAQGVRPESLSYGNPVKKARDIEFAHRVGVRRFTFDSREDLEKLAEFAPGATVSCR 135 Query: 128 V 128 + Sbjct: 136 I 136 >gi|330967859|gb|EGH68119.1| hypothetical protein PSYAC_25113 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 359 Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 44/169 (26%), Gaps = 11/169 (6%) Query: 17 KNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLY 74 + N M R VK + A AG V++++E Sbjct: 2 QRNIQRMQQRMNELGVRLRPHVKT----SKSLPVIQAQIAAGASGVAVSTLKEAEHCFAE 57 Query: 75 TPQARIFVLYGIHPGQEKIIFDTNLIPV-----ISSVPQLTFYSKLMSCGVSHPYALQVD 129 + + ++ + S V + +++D Sbjct: 58 GISDVFYAVAIAPGKLDQALTLRRNGCRLSLLTDSVVAAQAIVAFGQQHDEQFEVWIEID 117 Query: 130 TGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQ 178 +R GL++++ + G + A + ++Q Sbjct: 118 CDGHRSGLTVEDNALIEVAKTLVEGGMQLRGVMTHAGSSYDLDSPEALQ 166 >gi|298244439|ref|ZP_06968245.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963] gi|297551920|gb|EFH85785.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963] Length = 370 Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 62/264 (23%), Gaps = 31/264 (11%) Query: 7 LRLKIDLTALKNNWHSMNALSGNART-----AAVVKDNAYGLGCEKIAPALYNAGVQDFF 61 + +DLT ++ N + + VK ++A L AG Sbjct: 16 PSMIVDLTLMEENIDRLMQRFREKKIHVRPHLKTVKS-------PELARRLLAAGAVGGC 68 Query: 62 VTSVEEGVKLRLYTPQ----ARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS 117 V V E + V +I I V+ Sbjct: 69 VAKVSEAEVMAQEGIDDLLITTEIVGKPKLSRLVTLIQHHPRIKVVIDSFIGAQELNTAL 128 Query: 118 CGVSHPYALQVDTGFNRLGLSL---QEALDFTHNSFNKKLGQLSLIISHLACADDPSSHV 174 + +D + + +EAL H L + + Sbjct: 129 HEAQLEIDVLIDLNVGQNRCGVLPGKEALTLAHYCSKLPHLHLVGVQGY---------EG 179 Query: 175 NSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQT 234 + + L ++ L + ++ G + +I + T Sbjct: 180 HLQHIHSPEERTQRCHQAMRLLTETAAQLRFEGFPIEVVTTGGTGTA---EICADYGGIT 236 Query: 235 VVTAEARIILIRKALAGELVSYGG 258 V + I + +Y Sbjct: 237 EVQPGSFIFMDTDYRNALGPTYAN 260 >gi|32474294|ref|NP_867288.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Rhodopirellula baltica SH 1] gi|32444832|emb|CAD74834.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Rhodopirellula baltica SH 1] Length = 391 Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 15/189 (7%) Query: 14 TALKNNWHSMNALSGNA-RTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLR 72 ++ N M ++G A + VK I +G+ F ++ E Sbjct: 40 DRVQANLDRMIEMAGGADKLRPHVKT----HKMPAIVELSVASGITRFKSATIAEAEMTA 95 Query: 73 LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFY-------SKLMSCGVSHPYA 125 + + + P + I P + + G+ Sbjct: 96 AAGAVDVLLAVQPVGPNIGRFIKLIQRYPGCLFSCLVDDLSVLASLEAAFELAGLQGSVW 155 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 + +D G +R G++ ++ S + ++ + D +S +L R Sbjct: 156 IDIDVGMHRTGIAPNDSATELVRSIQTSDH---VRLAGIHVYDGHLHDTDSEKLRRQFDE 212 Query: 186 ISHYKGIEA 194 I Sbjct: 213 AVKPFWIWF 221 >gi|198437630|ref|XP_002124295.1| PREDICTED: similar to Kielin [Ciona intestinalis] Length = 1993 Score = 35.8 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 11/218 (5%), Positives = 33/218 (15%), Gaps = 6/218 (2%) Query: 99 LIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFN---RLGLSLQEALDFTHNSFNKKLG 155 + + + L D + R + Sbjct: 962 CQSCRFNNQLFNNEDEFNDPENTCNTCLCEDGNVHCSSRTCTEVNCQNPTFDKCGCPVCF 1021 Query: 156 QLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRP 215 + + + + +N + A ++ P Sbjct: 1022 NCNYMGVDYTNNERFTDSMNQCNQCVCTLGTVQCIHVPCPPAPCPSPVVAPGECCSKCIE 1081 Query: 216 GISLYGGTDKINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY 275 + G P + + + Sbjct: 1082 TCDVGGAIHDNGAIFPSADDPCSTCSCSFGTVRCLKFGCDRSCTHPRAQSECCPDCSGCL 1141 Query: 276 ADGYPLTLSGLDSEHSPSVF---LGGKGFIKGYMVPIL 310 G + + G + P++ Sbjct: 1142 YQGVLRNEGEFFTPTNQCKQCSCYRGSVLCRDIRCPVV 1179 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.135 0.425 Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,299,384,070 Number of Sequences: 14124377 Number of extensions: 211287133 Number of successful extensions: 498461 Number of sequences better than 10.0: 3512 Number of HSP's better than 10.0 without gapping: 2997 Number of HSP's successfully gapped in prelim test: 515 Number of HSP's that attempted gapping in prelim test: 483373 Number of HSP's gapped (non-prelim): 3734 length of query: 370 length of database: 4,842,793,630 effective HSP length: 140 effective length of query: 230 effective length of database: 2,865,380,850 effective search space: 659037595500 effective search space used: 659037595500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 82 (36.2 bits)