HHsearch alignment for GI: 254780334 and conserved domain: COG0378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription].
Probab=96.73 E-value=0.011 Score=39.23 Aligned_cols=87 Identities=26% Similarity=0.365 Sum_probs=49.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CCCC-----CC-CHHEECCCCHHHHHHHHH
Q ss_conf 0899954987518899999999985039819999864630478888752-0157-----75-100003478899999997
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LNTI-----NS-SVYIAIETNVEDIIATLI 163 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~~~-----~~-~i~~~~e~~l~~il~~~i 163 (479)
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~a-i~~l~ 91 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEA-IEELV 91 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH-HHHHH
T ss_conf 899961799867899999999999752-7768996404006559999737798068740387658867889999-99986
Q ss_pred HCCC-CCEEEECHHHHH
Q ss_conf 3169-828997216876
Q gi|254780334|r 164 TNEK-PDLVIIDSIQTL 179 (479)
Q Consensus 164 ~~~~-~~~vVIDSIQtl 179 (479)
T Consensus 92 ~~~~~~Dll~iEs~GNL 108 (202)
T COG0378 92 LDFPDLDLLFIESVGNL 108 (202)
T ss_pred HCCCCCCEEEEECCCCE
T ss_conf 31776778999237643