HHsearch alignment for GI: 254780334 and conserved domain: COG0470

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=96.75  E-value=0.014  Score=38.43  Aligned_cols=106  Identities=17%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC-CCCHHEECCCC------HHHHHHHHHH
Q ss_conf             8999549875188999999999850398199998646304788887520157-75100003478------8999999973
Q gi|254780334|r   92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI-NSSVYIAIETN------VEDIIATLIT  164 (479)
Q Consensus        92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~-~~~i~~~~e~~------l~~il~~~i~  164 (479)
T Consensus        26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~   99 (325)
T COG0470          26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAE   99 (325)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             1003799999789999999999658664334552002------2444320256886599773213333006999999998


Q ss_pred             -------CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEEEE
Q ss_conf             -------16982899721687665420445563679999999999975--307978999863
Q gi|254780334|r  165 -------NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA--KKNGVAMVLVGH  217 (479)
Q Consensus       165 -------~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A--K~~~i~viligh  217 (479)
T Consensus       100 ~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lEep~~~~~~il~~n  147 (325)
T COG0470         100 FLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEEPPKNTRFILITN  147 (325)
T ss_pred             HCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf             604465667726999732032698--------------888767543324888716999749