HHsearch alignment for GI: 254780334 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=96.75 E-value=0.014 Score=38.43 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=53.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC-CCCHHEECCCC------HHHHHHHHHH
Q ss_conf 8999549875188999999999850398199998646304788887520157-75100003478------8999999973
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI-NSSVYIAIETN------VEDIIATLIT 164 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~-~~~i~~~~e~~------l~~il~~~i~ 164 (479)
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~ 99 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAE 99 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 1003799999789999999999658664334552002------2444320256886599773213333006999999998
Q ss_pred -------CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEEEE
Q ss_conf -------16982899721687665420445563679999999999975--307978999863
Q gi|254780334|r 165 -------NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA--KKNGVAMVLVGH 217 (479)
Q Consensus 165 -------~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A--K~~~i~viligh 217 (479)
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 604465667726999732032698--------------888767543324888716999749