HHsearch alignment for GI: 254780334 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.22  E-value=0.0063  Score=40.91  Aligned_cols=100  Identities=27%  Similarity=0.324  Sum_probs=72.5

Q ss_pred             CCHHHHHHHCCC-------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCC
Q ss_conf             812488886598-------578708999549875188999999999850398199998646----304788887520157
Q gi|254780334|r   75 HIDELDRVTGGG-------FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTI  143 (479)
Q Consensus        75 Gi~eLDrvLGGG-------l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~  143 (479)
T Consensus        78 V~eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~  157 (451)
T COG0541          78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP  157 (451)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999998488876650378998589998156797486899999999974994589850567868999999999860985


Q ss_pred             CCCHHEECCCCHHHHHHHHH---HCCCCCEEEECHH
Q ss_conf             75100003478899999997---3169828997216
Q gi|254780334|r  144 NSSVYIAIETNVEDIIATLI---TNEKPDLVIIDSI  176 (479)
Q Consensus       144 ~~~i~~~~e~~l~~il~~~i---~~~~~~~vVIDSI  176 (479)
T Consensus       158 ~f~~--~~~~~Pv~Iak~al~~ak~~~~DvvIvDTA  191 (451)
T COG0541         158 FFGS--GTEKDPVEIAKAALEKAKEEGYDVVIVDTA  191 (451)
T ss_pred             EECC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             3167--788997999999999999749988999688