HHsearch alignment for GI: 254780334 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.22 E-value=0.0063 Score=40.91 Aligned_cols=100 Identities=27% Similarity=0.324 Sum_probs=72.5
Q ss_pred CCHHHHHHHCCC-------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCC
Q ss_conf 812488886598-------578708999549875188999999999850398199998646----304788887520157
Q gi|254780334|r 75 HIDELDRVTGGG-------FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTI 143 (479)
Q Consensus 75 Gi~eLDrvLGGG-------l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~ 143 (479)
T Consensus 78 V~eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999998488876650378998589998156797486899999999974994589850567868999999999860985
Q ss_pred CCCHHEECCCCHHHHHHHHH---HCCCCCEEEECHH
Q ss_conf 75100003478899999997---3169828997216
Q gi|254780334|r 144 NSSVYIAIETNVEDIIATLI---TNEKPDLVIIDSI 176 (479)
Q Consensus 144 ~~~i~~~~e~~l~~il~~~i---~~~~~~~vVIDSI 176 (479)
T Consensus 158 ~f~~--~~~~~Pv~Iak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 158 FFGS--GTEKDPVEIAKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred EECC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 3167--788997999999999999749988999688