HHsearch alignment for GI: 254780334 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=96.98 E-value=0.017 Score=37.68 Aligned_cols=85 Identities=27% Similarity=0.337 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHH----HHHH
Q ss_conf 8708999549875188999999999850398199998646----3047888875201577510000347889----9999
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVE----DIIA 160 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~----~il~ 160 (479)
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G~DpAaVafDAi~ 215 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EGADPAAVAFDAIQ 215 (340)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCC--CCCCCHHHHHHHHH
T ss_conf 8679999934888637179999999997898699982334789999999999999599278259--99980899999999
Q ss_pred HHHHCCCCCEEEECHH
Q ss_conf 9973169828997216
Q gi|254780334|r 161 TLITNEKPDLVIIDSI 176 (479)
Q Consensus 161 ~~i~~~~~~~vVIDSI 176 (479)
T Consensus 216 ~-Akar~~DvvliDTA 230 (340)
T COG0552 216 A-AKARGIDVVLIDTA 230 (340)
T ss_pred H-HHHCCCCEEEEECC
T ss_conf 9-99769999999675