HHsearch alignment for GI: 254780334 and conserved domain: COG1124
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].
Probab=97.98 E-value=0.00022 Score=51.49 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH--------------------------------
Q ss_conf 857870899954987518899999999985039819999864630478--------------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI-------------------------------- 133 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi-------------------------------- 133 (479)
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 96489789998489898889999995656-78886289888405766530333045069951872246841019899742
Q ss_pred --------------HHHHHHCCCCCCCHHEE----CCCCHHHH-HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf --------------88875201577510000----34788999-999973169828997216876654204455636799
Q gi|254780334|r 134 --------------RLRAQRLNTINSSVYIA----IETNVEDI-IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 134 --------------~~Ra~Rl~~~~~~i~~~----~e~~l~~i-l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
T Consensus 108 pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA-L~~~PklLIlDEptSaLD~s--------iQa 178 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA-LIPEPKLLILDEPTSALDVS--------VQA 178 (252)
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHH-HCCCCCEEEECCCHHHHCHH--------HHH
T ss_conf 430377537899999999984999899853942128168999999998-63688879953823441588--------999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 179 -~IlnlL~~l~~~~~lt~l~IsH--------dl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 179 -QILNLLLELKKERGLTYLFISH--------DLALVEHMCDRIAVMD 216 (252)
T ss_pred -HHHHHHHHHHHHCCCEEEEEEC--------CHHHHHHHHHHEEEEE
T ss_conf -9999999999861945999967--------2999998853525400