HHsearch alignment for GI: 254780334 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=96.79 E-value=0.006 Score=41.08 Aligned_cols=63 Identities=29% Similarity=0.485 Sum_probs=39.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCE
Q ss_conf 08999549875188999999999850398199998646304788887520157751000034788999999973169828
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDL 170 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~ 170 (479)
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emg---vn~k~tsGp--------------------~leK~gDlaaiLt~-Le--~~DV 106 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELG---VNLKITSGP--------------------ALEKPGDLAAILTN-LE--EGDV 106 (332)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CCEEECCCC--------------------CCCCHHHHHHHHHC-CC--CCCE
T ss_conf 7478647998768889999999856---773763662--------------------01572659999863-98--6776
Q ss_pred EEECHHHHH
Q ss_conf 997216876
Q gi|254780334|r 171 VIIDSIQTL 179 (479)
Q Consensus 171 vVIDSIQtl 179 (479)
T Consensus 107 LFIDEIHrl 115 (332)
T COG2255 107 LFIDEIHRL 115 (332)
T ss_pred EEEEHHHHC
T ss_conf 777255314